Citrus Sinensis ID: 012124
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| E9L7A5 | 479 | Bifunctional aspartate am | N/A | no | 0.940 | 0.922 | 0.827 | 0.0 | |
| Q9SIE1 | 475 | Bifunctional aspartate am | yes | no | 0.989 | 0.978 | 0.735 | 0.0 | |
| Q5F4K8 | 492 | Aspartate aminotransferas | N/A | no | 0.846 | 0.808 | 0.786 | 0.0 | |
| Q9ZE56 | 399 | Aspartate aminotransferas | yes | no | 0.827 | 0.974 | 0.435 | 4e-89 | |
| Q02635 | 400 | Aspartate aminotransferas | yes | no | 0.829 | 0.975 | 0.436 | 5e-89 | |
| Q68XV9 | 399 | Aspartate aminotransferas | yes | no | 0.840 | 0.989 | 0.428 | 2e-88 | |
| Q1RGV0 | 399 | Aspartate aminotransferas | yes | no | 0.840 | 0.989 | 0.438 | 5e-88 | |
| Q4UND3 | 409 | Aspartate aminotransferas | yes | no | 0.831 | 0.955 | 0.427 | 1e-87 | |
| Q55128 | 389 | Aspartate aminotransferas | N/A | no | 0.819 | 0.989 | 0.421 | 3e-86 | |
| Q92JE7 | 401 | Aspartate aminotransferas | yes | no | 0.834 | 0.977 | 0.424 | 1e-85 |
| >sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Petunia hybrida PE=1 SV=1 | Back alignment and function desciption |
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Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/451 (82%), Positives = 410/451 (90%), Gaps = 9/451 (1%)
Query: 28 PGSVSFPSRYLHNFNLNND--------RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 79
P S+SF S LH F+L + RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 80 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 139
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 140 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 199
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379
+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 380 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCI
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCI 448
Query: 440 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
RISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 449 RISYAASLSTLQAAVERIKKALVTIKPPVPV 479
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Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Can use 2-oxoglutarate, oxaloacetate and prephenate as substrates, but not phenylpyruvate or 4-hydroxyphenylpyruvate. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 7EC: 9 |
| >sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Arabidopsis thaliana GN=PAT PE=1 SV=2 | Back alignment and function description |
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Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/472 (73%), Positives = 391/472 (82%), Gaps = 7/472 (1%)
Query: 6 HSSTSFISNPVNFGHSKIPAQIP-GSVSFPSRYLHNFNL----NNDRRVLRVMACSGVEE 60
SS + IS+ G S ++ P GSV F +F+ N R+ + + E
Sbjct: 4 QSSVAVISSAAARGESFPDSKKPIGSVRFQQPLRLSFSYCKSGNMSSRICAMAKPNDAET 63
Query: 61 VQ--VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGIN 118
+ VD+SLSPRV ++KPSKT+ ITD A L Q+GV VIRLAAGEPDFDTP ++AEAGIN
Sbjct: 64 LSSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVVAEAGIN 123
Query: 119 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 178
AIREGFTRYT NAG ELR AIC KLKEENGLSY PDQILVSNGAKQS+LQAVLAVCSPG
Sbjct: 124 AIREGFTRYTLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPG 183
Query: 179 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 238
DEVIIPAP+WVSY E AR+ADATPV++PT+IS NFLLDPK LESKLTEKSRLLILCSPSN
Sbjct: 184 DEVIIPAPYWVSYTEQARLADATPVVIPTKISNNFLLDPKDLESKLTEKSRLLILCSPSN 243
Query: 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298
PTGSVYPK+LL+EIARI+AKHPRLLVLSDEIYEHIIYAPATHTSFASLP M+ERTLTVNG
Sbjct: 244 PTGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTVNG 303
Query: 299 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358
FSKAFAMTGWRLGY+AGPKH VAAC+K+Q Q +SGASSI+QKAGVAALGLG AGGE V++
Sbjct: 304 FSKAFAMTGWRLGYLAGPKHIVAACSKLQGQVSSGASSIAQKAGVAALGLGKAGGETVAE 363
Query: 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 418
MVKA+RERRDFLVKS G+++GVK+SEPQGAFYLFIDFS YYGSEAEGFG I +S SL Y
Sbjct: 364 MVKAYRERRDFLVKSLGDIKGVKISEPQGAFYLFIDFSAYYGSEAEGFGLINDSSSLALY 423
Query: 419 LLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
LDK QVA+VPGDAFGDD+CIRISYA SL LQAAVE+I+K L LR V V
Sbjct: 424 FLDKFQVAMVPGDAFGDDSCIRISYATSLDVLQAAVEKIRKALEPLRATVSV 475
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Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q5F4K8|PAT_PINPS Aspartate aminotransferase OS=Pinus pinaster GN=AAT PE=1 SV=1 | Back alignment and function description |
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Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/399 (78%), Positives = 354/399 (88%), Gaps = 1/399 (0%)
Query: 62 QVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIR 121
Q+D+SLSPRV A+KPSKT+AITD ATAL QAGV VI LAAGEPDF+TP +AEAGI AI+
Sbjct: 79 QLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFNTPDAVAEAGIKAIQ 138
Query: 122 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA-VLAVCSPGDE 180
+G+TRYTPNAGT+E+R+AICHKLKEENGLSYTPDQILVSNGAKQ I+ A VLAVCSPGDE
Sbjct: 139 DGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCIMAAAVLAVCSPGDE 198
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240
VIIPAPFWVSY EMAR+ADATPVI+PT +S++FLL+P+V SKL E SRLLILCSPSNPT
Sbjct: 199 VIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNENSRLLILCSPSNPT 258
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
GSVYP+ LL+EIA+IVAKHP+LLVLSDEIYEHI+Y PA HTSFASLPGMWERTLTVNGFS
Sbjct: 259 GSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASLPGMWERTLTVNGFS 318
Query: 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
KAFAMTGWRLGY+AGPKHFV AC +IQSQ TSGASSISQKAGVAAL LGYAG E VS MV
Sbjct: 319 KAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAALALGYAGSEAVSTMV 378
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420
KA+RERRDFLV+ +EGVK+ PQGAFYLF DFS+YYG+E E FG I SE+LCR+ L
Sbjct: 379 KAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDFGVINGSEALCRFFL 438
Query: 421 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
+KAQVALVPGDAFG+D CIRISYAASL TL+ A+ I+K
Sbjct: 439 EKAQVALVPGDAFGNDDCIRISYAASLDTLRTAINNIEK 477
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Prokaryotic-type aspartate aminotransferase. Specific for aspartate and no activity with glutamine, asparagine, alanine, histidine, leucine, methionine, lysine, arginine, tryptophan, tyrosine, phenylalanine or kynureine. Pinus pinaster (taxid: 71647) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9ZE56|AAT_RICPR Aspartate aminotransferase OS=Rickettsia prowazekii (strain Madrid E) GN=aatA PE=3 SV=2 | Back alignment and function description |
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Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/393 (43%), Positives = 242/393 (61%), Gaps = 4/393 (1%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S R+N++KPS T+A+ + L +AGV++I L AGEPDFDTP I E I +I++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVNIIALGAGEPDFDTPDNIKEVAITSIKDGFTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G L+ AI +K K EN + Y D+I+VS G KQ I +A GDEVIIP P
Sbjct: 64 YTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSVEALEHSITDKTKWLIINSPSNPTGAGYNC 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L+ IA+ + K+P + ++SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 KELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + F++
Sbjct: 244 TGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQMAAIEALN---GTQDYIKSNALNFQK 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
+RD + E+ + +P+GAFYLF+ +G++ + I NS + YLL++A+V
Sbjct: 301 KRDLALSILEEVTYFECYKPEGAFYLFVKCDKIFGTKTKSGRIIANSNNFSEYLLEEAKV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 458
A+VPG AFG D RISYA S+ L+ A RIK
Sbjct: 361 AVVPGIAFGLDGYFRISYATSMQELEEACIRIK 393
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Rickettsia prowazekii (strain Madrid E) (taxid: 272947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q02635|AATA_RHIME Aspartate aminotransferase A OS=Rhizobium meliloti (strain 1021) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 236/394 (59%), Gaps = 4/394 (1%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
L+ ++ VKPS T+A++ +A L G VI L AGEPDFDTP I +A I+AI G T+
Sbjct: 4 LADALSRVKPSATIAVSQKARELKAKGRDVIGLGAGEPDFDTPDNIKKAAIDAIDRGETK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YTP +G ELR AI K K EN L YT Q +V G KQ + A +A +PGDEV+IPAP
Sbjct: 64 YTPVSGIPELREAIAKKFKRENNLDYTAAQTIVGTGGKQILFNAFMATLNPGDEVVIPAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYPEM + TPV +PTR NF L + L+ +T K++ + SPSNP+G+ Y
Sbjct: 124 YWVSYPEMVALCGGTPVFVPTRQENNFKLKAEDLDRAITPKTKWFVFNSPSNPSGAAYSH 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L + ++ KHP + VL+D++YEH+ Y + + PG++ERTLT+NG SKA+AM
Sbjct: 184 EELKALTDVLMKHPHVWVLTDDMYEHLTYGDFRFATPVEVEPGLYERTLTMNGVSKAYAM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY AGP H + A + IQ Q TSGA+SI+Q A V AL + + + + F+
Sbjct: 244 TGWRIGYAAGPLHLIKAMDMIQGQQTSGAASIAQWAAVEALN---GPQDFIGRNKEIFQG 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD +V + +G+ P+GAFY++ + G A IE E LL+ V
Sbjct: 301 RRDLVVSMLNQAKGISCPTPEGAFYVYPSCAGLIGKTAPSGKVIETDEDFVSELLETEGV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
A+V G AFG RISYA S L+ A RI++
Sbjct: 361 AVVHGSAFGLGPNFRISYATSEALLEEACRRIQR 394
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Required for symbiotic nitrogen fixation. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q68XV9|AAT_RICTY Aspartate aminotransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 171/399 (42%), Positives = 244/399 (61%), Gaps = 4/399 (1%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S R+N++KPS T+A+ + L +AGV++I L AGEPDFDTP I E I +I++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVNIIALGAGEPDFDTPDNIKEVAITSIKDGFTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G L+ AI +K K EN + Y D+I+VS G KQ I +A GDEVIIP P
Sbjct: 64 YTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M ++ TP+ + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPIFVNCGIENNFKLTVEALERSITDKTKWLIINSPSNPTGAGYNC 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L+ IA+ + K+P + ++SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 KELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + F++
Sbjct: 244 TGWRIGYGAGSKALIKAMTVIQSQSTSNPCSISQMAAIEALN---GTQDYIKPNALNFQK 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
+RD + ++ + +P+GAFYLF+ +G++ + I NS YLL++A+V
Sbjct: 301 KRDLALSILEKVIYFECYKPEGAFYLFVKCDKIFGTKTKSGKIIANSNHFSEYLLEEAKV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
A+VPG AFG D RISYA S+ L+ A RIK+ TL
Sbjct: 361 AVVPGVAFGLDGYFRISYATSMQELKEACIRIKQACNTL 399
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Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q1RGV0|AAT_RICBR Aspartate aminotransferase OS=Rickettsia bellii (strain RML369-C) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/399 (43%), Positives = 246/399 (61%), Gaps = 4/399 (1%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S ++NA+KPS T+A+ + L +AG+ +I L AGEPDFDTP I EA I AI++GFT+
Sbjct: 4 ISTQLNAIKPSPTLAVVRKTLELKRAGIDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G L+ AI K K EN + Y ++I+VS G KQ I +A + GDEVIIPAP
Sbjct: 64 YTNVEGIPALKEAIQAKFKRENNIDYDLEEIIVSTGGKQVIYNLFMASLNKGDEVIIPAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M +A+ TPV I NF L + LE +T K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVLLAEGTPVFANCGIESNFKLSGEALEQLITPKTKWLIINSPSNPTGASYSH 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
+ L IA ++ KHP + V+SD+IYEHI + + A + P + +R TVNG SKA++M
Sbjct: 184 SELKNIAEVLRKHPYVNVMSDDIYEHITFDGFKFYTLAEIAPDLKDRIFTVNGVSKAYSM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY AG K + A IQSQ TS SISQ A V AL G G +++ F +
Sbjct: 244 TGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQVAAVEALN-GVQG--YIAQNALNFEK 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
+RD + ++ + +P+GAFYLFI +G++ + I NS YLL++A+V
Sbjct: 301 KRDLALSILQRVKYFECYKPEGAFYLFIKCDKIFGAKTKSGKVINNSNDFGEYLLEEAKV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
A+VPG AFG + RISYA S+ L+ A R+++ +L
Sbjct: 361 AVVPGIAFGLEGYFRISYATSMEELEEACLRMERACGSL 399
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Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q4UND3|AAT_RICFE Aspartate aminotransferase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 169/395 (42%), Positives = 241/395 (61%), Gaps = 4/395 (1%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S R+N++KPS T+A+ + L +AGV +I L AGEPDFDTP I EA I AI++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G L+ AI K K EN + Y D+I+VS G KQ I +A GD+VIIPAP
Sbjct: 64 YTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDKVIIPAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNF 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L+ IA+++ K+P + V+SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 EELENIAKVLRKYPHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY G K + A IQSQ TS SISQ A + +L + + F++
Sbjct: 244 TGWRIGYGVGSKALIKAMTIIQSQSTSNPCSISQMAAIESLN---GPQDYIKPNALNFQK 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
+RD + ++ + +P+GAFYLF+ +G + + I NS YLL++A+V
Sbjct: 301 KRDLALSILKRVKYFECYKPEGAFYLFVKCDKIFGHKTKSGKIIANSNDFAEYLLEEAKV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460
A+VPG AFG + RISYA S+ L+ A RI++
Sbjct: 361 AVVPGIAFGLEGYFRISYATSMEELEEACIRIERA 395
|
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q55128|AAT_SYNY3 Aspartate aminotransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aspC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 243/399 (60%), Gaps = 14/399 (3%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
L+ RV+ V PS T+ IT +A A+ G+ V+ AGEPDF TP I EA A+ EG TR
Sbjct: 3 LTQRVSQVVPSITLEITAKAKAMRTEGIDVLSFTAGEPDFTTPPHIVEAAKLALDEGKTR 62
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y P AG LR AI KL+E+N L Y ILV+NG K S+ +LA+ GDEVIIPAP
Sbjct: 63 YGPAAGEPALRQAIAKKLREKNNLPYEAANILVTNGGKHSLFNLMLAMIEQGDEVIIPAP 122
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+W+SYPEM R+A+ TPVI+ T + ++ + P+ L +T KS+L +L SPSNPTG+VY
Sbjct: 123 YWLSYPEMVRLAEGTPVIVNTTAATDYKITPEQLRQAITSKSKLFVLNSPSNPTGAVYTP 182
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAM 305
+ +A ++ ++ L V+SDEIYE I+Y H S ++ +++RT+ NGF+K+++M
Sbjct: 183 AEIRALAAVILEYEDLYVVSDEIYERILYDGTEHLSIGAVNDEIFQRTIISNGFAKSYSM 242
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY+AG + AC+ IQ TS + +Q +AAL V MVKAF E
Sbjct: 243 TGWRVGYLAGELPLIQACSTIQGHSTSNVCTFAQYGAIAALE---NPQTCVETMVKAFTE 299
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RR +V+ ++ G+ P+GAFY+F+D + G +E S LL+ QV
Sbjct: 300 RRQVIVEGINQIAGLSCPNPKGAFYVFVDIAK------TGLNSLEFSAR----LLESHQV 349
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
A++PG AFG D C+R SYA + T++ + +++ + TL
Sbjct: 350 AVIPGAAFGADDCVRFSYATDMDTIKQGLAELERFVSTL 388
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q92JE7|AAT_RICCN Aspartate aminotransferase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 240/396 (60%), Gaps = 4/396 (1%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S R++++KPS T+A+ + L +AGV +I L AGEPDFDTP I E I AI++GFT+
Sbjct: 4 ISTRLSSIKPSPTLAVVKKTLELKKAGVDIITLGAGEPDFDTPDNIKEGAIKAIKDGFTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G L+ AI K K EN + Y D+I+VS G KQ I +A GDEVIIPAP
Sbjct: 64 YTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDQGDEVIIPAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNF 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L+ IA+++ K+ + V+SD+IYEHI + + A + P + +R TVNG SKA++M
Sbjct: 184 EELENIAKVLRKYSHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKKRIFTVNGVSKAYSM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + ++
Sbjct: 244 TGWRIGYGAGSKTLIKAMTIIQSQSTSNPCSISQMAAIEALN---GPQDYIKPNALNCQK 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
+RD + ++ + +P+GAFYLF+ +G + + I NS YLL++A+V
Sbjct: 301 KRDLALSILKRVKYFECYKPEGAFYLFVKCDKIFGHKTKSGTIIANSNDFAEYLLEEAKV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461
A+VPG AFG + RISYA S+ L+ A RI+K +
Sbjct: 361 AVVPGIAFGLEGYFRISYATSMEELEKACIRIEKTI 396
|
Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 296082448 | 476 | unnamed protein product [Vitis vinifera] | 0.965 | 0.953 | 0.829 | 0.0 | |
| 395406797 | 479 | RecName: Full=Bifunctional aspartate ami | 0.940 | 0.922 | 0.827 | 0.0 | |
| 350540010 | 480 | prephenate aminotransferase [Solanum lyc | 0.940 | 0.920 | 0.824 | 0.0 | |
| 224096225 | 410 | predicted protein [Populus trichocarpa] | 0.872 | 1.0 | 0.897 | 0.0 | |
| 225438653 | 410 | PREDICTED: bifunctional aspartate aminot | 0.848 | 0.973 | 0.909 | 0.0 | |
| 224083747 | 410 | predicted protein [Populus trichocarpa] | 0.872 | 1.0 | 0.890 | 0.0 | |
| 449469136 | 475 | PREDICTED: bifunctional aspartate aminot | 0.940 | 0.930 | 0.831 | 0.0 | |
| 255576156 | 484 | aspartate aminotransferase, putative [Ri | 0.997 | 0.969 | 0.763 | 0.0 | |
| 388500244 | 475 | unknown [Medicago truncatula] | 0.978 | 0.968 | 0.780 | 0.0 | |
| 356525505 | 464 | PREDICTED: bifunctional aspartate aminot | 0.861 | 0.872 | 0.876 | 0.0 |
| >gi|296082448|emb|CBI21453.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/462 (82%), Positives = 415/462 (89%), Gaps = 8/462 (1%)
Query: 7 SSTSFISNPVN--FGHSKIPAQIPGSVSFPSRYLHNFNLNNDRRV----LRVMACSG--V 58
S T+F P F I ++ SVSFPSR+ +L + R+V L V+ +G
Sbjct: 5 SFTTFTPKPTRLCFADQSIGSECFRSVSFPSRFHSLKSLESTRQVQSSRLDVIVRAGGTS 64
Query: 59 EEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGIN 118
E+++VD+SLSPRVN+VKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTP +IAEAGIN
Sbjct: 65 EKMEVDISLSPRVNSVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGIN 124
Query: 119 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 178
AIREG+TRYTPNAGTLE+RSAICHKLKEENGLSYTPD+ILVSNGAKQSILQAVLAVCSPG
Sbjct: 125 AIREGYTRYTPNAGTLEVRSAICHKLKEENGLSYTPDEILVSNGAKQSILQAVLAVCSPG 184
Query: 179 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 238
DEVIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKLTEKSRLLILCSPSN
Sbjct: 185 DEVIIPAPFWVSYPEMARLADATPVILPTLISENFLLDPKFLESKLTEKSRLLILCSPSN 244
Query: 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298
PTGSVY + LL+EIA+IVA+HPRLLVLSDEIYEHIIYAPATHTSFA+LPGMWERTLTVNG
Sbjct: 245 PTGSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHTSFAALPGMWERTLTVNG 304
Query: 299 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358
FSKAFAMTGWRLGY+AGPKHFVAAC KIQSQFTSGASSISQKA VAALG+GYAGGE VS
Sbjct: 305 FSKAFAMTGWRLGYLAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGMGYAGGEAVST 364
Query: 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 418
MVKAFRERRDFLVKSFGELEGVK+SEPQGAFYLF+DFS+YYG+EAEGFG IENSESLCRY
Sbjct: 365 MVKAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYGAEAEGFGIIENSESLCRY 424
Query: 419 LLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460
LLD+AQVALVPGDAFGDD CIRISYAASL+TL AAVERIKK
Sbjct: 425 LLDQAQVALVPGDAFGDDKCIRISYAASLSTLHAAVERIKKA 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395406797|sp|E9L7A5.1|PAT_PETHY RecName: Full=Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; Short=PhPPA-AT; Flags: Precursor gi|305855253|gb|ADM67557.1| prephenate aminotransferase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/451 (82%), Positives = 410/451 (90%), Gaps = 9/451 (1%)
Query: 28 PGSVSFPSRYLHNFNLNND--------RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 79
P S+SF S LH F+L + RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 80 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 139
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 140 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 199
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379
+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 380 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCI
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCI 448
Query: 440 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
RISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 449 RISYAASLSTLQAAVERIKKALVTIKPPVPV 479
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350540010|ref|NP_001234609.1| prephenate aminotransferase [Solanum lycopersicum] gi|311700557|gb|ADQ00383.1| prephenate aminotransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/451 (82%), Positives = 406/451 (90%), Gaps = 9/451 (1%)
Query: 28 PGSVSFPSRYLHNFNLNND--------RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 79
P S+SF S L +L + R V+ ++ V+VD+SLSPRVN+VKPSKT
Sbjct: 31 PTSISFSSN-LQGLSLRSSGAKRQLYSRGTGSVVIAQNMDRVEVDLSLSPRVNSVKPSKT 89
Query: 80 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 139
VAITDQATAL QAGV VIRLAAGEPDFDTP IAEAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 90 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGHTRYTPNAGTMELRSA 149
Query: 140 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 199
ICHKLKEENGLSYTPDQI+VSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 150 ICHKLKEENGLSYTPDQIVVSNGAKQSIVQAVLAVCSPGDEVLIPAPYWVSYPEMARMAD 209
Query: 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
A PVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL+EIA IVA+H
Sbjct: 210 AMPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEEIAEIVARH 269
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 270 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 329
Query: 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379
V+ACNK+QSQFTSGASSISQKA VAALGLGYAGGE V+ MVKAFRERRDFLVKSFGE++G
Sbjct: 330 VSACNKLQSQFTSGASSISQKAAVAALGLGYAGGEAVATMVKAFRERRDFLVKSFGEIDG 389
Query: 380 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDK+QVALVPGDAFGDDTCI
Sbjct: 390 VKISEPRGAFYLFIDLSSYYGVEVDGFGTINNSESLCRYLLDKSQVALVPGDAFGDDTCI 449
Query: 440 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
RISYAASL+TLQAAVERIKK L+TLRP VPV
Sbjct: 450 RISYAASLSTLQAAVERIKKALVTLRPPVPV 480
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096225|ref|XP_002310582.1| predicted protein [Populus trichocarpa] gi|222853485|gb|EEE91032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/410 (89%), Positives = 389/410 (94%)
Query: 61 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 120
+Q+D+SLSPRVNAVKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTPV+IAEAGINAI
Sbjct: 1 MQLDISLSPRVNAVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPVVIAEAGINAI 60
Query: 121 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 180
REGFTRYTPNAGT ELR AICHKLKEENG+SYTPDQILVSNGAKQSI QA+LAVCSPGDE
Sbjct: 61 REGFTRYTPNAGTQELRVAICHKLKEENGISYTPDQILVSNGAKQSIYQAMLAVCSPGDE 120
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK+LESKL+ KSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTSISENFLLDPKLLESKLSAKSRLLILCSPSNPT 180
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
GSVY K LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATH SFASLPGMWERTLTVNGFS
Sbjct: 181 GSVYSKKLLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHISFASLPGMWERTLTVNGFS 240
Query: 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMV 300
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420
KAF ERRDFL++SFGE+EGV+MSEPQGAFYLFID S+YYG+EAEGFGKIE+S+SLCRYLL
Sbjct: 301 KAFMERRDFLIRSFGEMEGVRMSEPQGAFYLFIDTSSYYGTEAEGFGKIEDSDSLCRYLL 360
Query: 421 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
D+AQVALVPG AFGDD+CIRISYAASLTTLQ AV RIKK LL L+ VPV
Sbjct: 361 DQAQVALVPGVAFGDDSCIRISYAASLTTLQEAVGRIKKALLPLKSAVPV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438653|ref|XP_002277000.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/399 (90%), Positives = 385/399 (96%)
Query: 61 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 120
++VD+SLSPRVN+VKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTP +IAEAGINAI
Sbjct: 1 MEVDISLSPRVNSVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGINAI 60
Query: 121 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 180
REG+TRYTPNAGTLE+RSAICHKLKEENGLSYTPD+ILVSNGAKQSILQAVLAVCSPGDE
Sbjct: 61 REGYTRYTPNAGTLEVRSAICHKLKEENGLSYTPDEILVSNGAKQSILQAVLAVCSPGDE 120
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKLTEKSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTLISENFLLDPKFLESKLTEKSRLLILCSPSNPT 180
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
GSVY + LL+EIA+IVA+HPRLLVLSDEIYEHIIYAPATHTSFA+LPGMWERTLTVNGFS
Sbjct: 181 GSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHTSFAALPGMWERTLTVNGFS 240
Query: 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
KAFAMTGWRLGY+AGPKHFVAAC KIQSQFTSGASSISQKA VAALG+GYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYLAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGMGYAGGEAVSTMV 300
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420
KAFRERRDFLVKSFGELEGVK+SEPQGAFYLF+DFS+YYG+EAEGFG IENSESLCRYLL
Sbjct: 301 KAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYGAEAEGFGIIENSESLCRYLL 360
Query: 421 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
D+AQVALVPGDAFGDD CIRISYAASL+TL AAVERIKK
Sbjct: 361 DQAQVALVPGDAFGDDKCIRISYAASLSTLHAAVERIKK 399
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083747|ref|XP_002307109.1| predicted protein [Populus trichocarpa] gi|222856558|gb|EEE94105.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/410 (89%), Positives = 386/410 (94%)
Query: 61 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 120
+QVD+SLSPRV AVKPSKTVAITDQATALAQAGV VIRLAAGEPDFDTP +IAEAGINAI
Sbjct: 1 MQVDISLSPRVTAVKPSKTVAITDQATALAQAGVPVIRLAAGEPDFDTPAVIAEAGINAI 60
Query: 121 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 180
REG TRYTPNAGT ELR AIC KLKEENG+SY PDQILVSNGAKQSI QA+LAVCSPGDE
Sbjct: 61 REGHTRYTPNAGTQELRVAICQKLKEENGISYKPDQILVSNGAKQSIYQAILAVCSPGDE 120
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKL EKSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTSISENFLLDPKQLESKLNEKSRLLILCSPSNPT 180
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
GSVYPK LL+EIA+IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS
Sbjct: 181 GSVYPKKLLEEIAKIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 240
Query: 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
KAFAMTGWRLGY+AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYLAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMV 300
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420
AFRERRDFL+KSFGE+EGV +SEP GAFYLFIDFS+YYG+E EGFGKI++S++LCRYLL
Sbjct: 301 TAFRERRDFLIKSFGEMEGVGLSEPLGAFYLFIDFSSYYGAEVEGFGKIDDSDALCRYLL 360
Query: 421 DKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
D+AQVALVPG AFGDD+CIRISYAASLTTLQAAVERIKK LL L+ VPV
Sbjct: 361 DQAQVALVPGVAFGDDSCIRISYAASLTTLQAAVERIKKALLPLKSAVPV 410
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469136|ref|XP_004152277.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] gi|449484357|ref|XP_004156861.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/444 (83%), Positives = 399/444 (89%), Gaps = 2/444 (0%)
Query: 29 GSVSFPSRYLHNF--NLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQA 86
GS+SFPS+ L ++ ++V VMA + + V VD+SLSPRVN+VKPSKTVAI+DQA
Sbjct: 32 GSLSFPSQRLAPSLKSVQLTKKVKPVMAGNIPDHVSVDISLSPRVNSVKPSKTVAISDQA 91
Query: 87 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146
TAL QAGV VIRLAAGEPDFDTP I EAGINAIR+G+TRYT NAGTLELR AICHKLK+
Sbjct: 92 TALVQAGVPVIRLAAGEPDFDTPAPITEAGINAIRDGYTRYTANAGTLELRQAICHKLKD 151
Query: 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 206
ENGLSYTPDQILVSNGAKQSILQAV+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILP
Sbjct: 152 ENGLSYTPDQILVSNGAKQSILQAVVAVCSPGDEVIIPAPFWVSYPEMARLADATPVILP 211
Query: 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 266
T I NFLLDPK+LESK+TEKSRLLILCSPSNPTGSVYPK LL++IA IVAKHPRLLVLS
Sbjct: 212 THIDNNFLLDPKLLESKITEKSRLLILCSPSNPTGSVYPKELLEKIAEIVAKHPRLLVLS 271
Query: 267 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326
DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV+AC KI
Sbjct: 272 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVSACGKI 331
Query: 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386
QSQ TSGASSISQKA VAALG+GYAGGE V+ MVKAFRERRD+LVKSFGEL GVK+SEPQ
Sbjct: 332 QSQSTSGASSISQKAAVAALGMGYAGGEAVATMVKAFRERRDYLVKSFGELAGVKISEPQ 391
Query: 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAAS 446
GAFYLF+DFS+YYG+E EGFG I NSESLCRYLL+K QVALVPGDAFGDDTCIRISYA S
Sbjct: 392 GAFYLFLDFSSYYGAEVEGFGVINNSESLCRYLLEKGQVALVPGDAFGDDTCIRISYAES 451
Query: 447 LTTLQAAVERIKKGLLTLRPGVPV 470
L+ LQAAVERIKK L RP VPV
Sbjct: 452 LSVLQAAVERIKKALEAARPVVPV 475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576156|ref|XP_002528972.1| aspartate aminotransferase, putative [Ricinus communis] gi|223531562|gb|EEF33391.1| aspartate aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/482 (76%), Positives = 419/482 (86%), Gaps = 13/482 (2%)
Query: 2 ANSLHSSTSFISNPVNFGHSKIP----AQIPGSVSFPSRYLHNF--NLNNDRRV--LRVM 53
A SL + TS IS+ H + +Q S+ FPSR + F L R+V R+
Sbjct: 3 AASLRTLTSSISHLGGSAHQSVALDLGSQPSRSLFFPSRPYNLFLKPLEATRQVGSSRIS 62
Query: 54 ACSGVE-----EVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT 108
A E E+++D+SLSPRVN++KPSKTVAI D AT+L +AG+ VIRLAAGEPDFDT
Sbjct: 63 AVVKPESDSDQEMELDISLSPRVNSLKPSKTVAIMDHATSLLEAGIPVIRLAAGEPDFDT 122
Query: 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168
P IAEAGINAIREG+TRYTPNAGTLE+R+AICHKLKEENGLSY P++ILVSNGAKQSI+
Sbjct: 123 PTPIAEAGINAIREGYTRYTPNAGTLEVRTAICHKLKEENGLSYAPNEILVSNGAKQSIV 182
Query: 169 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS 228
QAVLAVCSPGDEV+IPAPFWVSYPE+AR+ADATPVI+PT ISENFL+DP++LESK++EKS
Sbjct: 183 QAVLAVCSPGDEVLIPAPFWVSYPEIARLADATPVIVPTSISENFLMDPRLLESKISEKS 242
Query: 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288
RLLILCSPSNPTGSVYPK LL+EIARIVAK+PRLLVLSDEIYEHIIYAPATHTSFASLPG
Sbjct: 243 RLLILCSPSNPTGSVYPKELLEEIARIVAKYPRLLVLSDEIYEHIIYAPATHTSFASLPG 302
Query: 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 348
MWERTLTVNGFSKAFAMTGWRLGY+A P+HF+AACNKIQSQFTSGASSI+QKA VAALGL
Sbjct: 303 MWERTLTVNGFSKAFAMTGWRLGYLAAPRHFLAACNKIQSQFTSGASSIAQKAAVAALGL 362
Query: 349 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408
G+AGGE VS MVKAF+ERRDFL+KSFGE+EGV+MSEPQGAFYLFID S+YYG E EGFGK
Sbjct: 363 GFAGGEAVSTMVKAFKERRDFLIKSFGEMEGVRMSEPQGAFYLFIDVSSYYGVEVEGFGK 422
Query: 409 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGV 468
I++S+SLCRYLLD AQVA+VPG AFGDD+CIRISYAASLTTLQAAVERIKK L+ L+P V
Sbjct: 423 IDDSDSLCRYLLDNAQVAVVPGGAFGDDSCIRISYAASLTTLQAAVERIKKALIPLKPAV 482
Query: 469 PV 470
PV
Sbjct: 483 PV 484
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500244|gb|AFK38188.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/473 (78%), Positives = 405/473 (85%), Gaps = 13/473 (2%)
Query: 1 MANS-LHSSTSFISNPVNFGHSKIPA---QIPGSVSFPSRYLHNF-----NLNNDRRVLR 51
MAN+ LH++T+ ++F +PA S+SF S L F + +RR
Sbjct: 1 MANTFLHNNTTCT---ISFPDKSLPAISVSRHRSLSFSSN-LSTFPKMSTAVEQNRRETI 56
Query: 52 VMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL 111
++ E++V +SLSPRVNAVKPS+TVAITDQATAL QAGV VIRLAAGEPDFDTP +
Sbjct: 57 IVKSKSDSELEVGISLSPRVNAVKPSRTVAITDQATALVQAGVPVIRLAAGEPDFDTPAV 116
Query: 112 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171
IAEAG+NAI EG+TRYTPNAGTLE+R AICHKLKEENGL YTPDQI+V+NGAKQSI QAV
Sbjct: 117 IAEAGVNAICEGYTRYTPNAGTLEIRQAICHKLKEENGLDYTPDQIVVTNGAKQSITQAV 176
Query: 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 231
+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILPT IS NFLLDPK+LESK+TEKSRLL
Sbjct: 177 IAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISNNFLLDPKLLESKITEKSRLL 236
Query: 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291
ILCSPSNPTGSVYPK LL+EIA+IVAKHPRLLV+SDEIYEHIIYAP THTSFASLP MW
Sbjct: 237 ILCSPSNPTGSVYPKYLLEEIAKIVAKHPRLLVISDEIYEHIIYAPTTHTSFASLPRMWN 296
Query: 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351
RTLTVNGFSKAFAMTGWRLGYIAGPKHF+AA KIQSQFTSG SSISQKAGVAALGLGYA
Sbjct: 297 RTLTVNGFSKAFAMTGWRLGYIAGPKHFIAAVGKIQSQFTSGPSSISQKAGVAALGLGYA 356
Query: 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411
GGE VS MVKA RERRD+LVKSF E++GVK+SEPQGAFYLFIDFS+YYG EAEGFGKIEN
Sbjct: 357 GGEAVSTMVKALRERRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYGKEAEGFGKIEN 416
Query: 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
SES CRYLLDK QVALVPG AFGDDTCIRISYAASL TLQAAVE IKK L+ L
Sbjct: 417 SESFCRYLLDKGQVALVPGSAFGDDTCIRISYAASLPTLQAAVENIKKALIPL 469
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525505|ref|XP_003531365.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/405 (87%), Positives = 380/405 (93%)
Query: 60 EVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA 119
+ VD+SLSPRVNAVKPSKTVAI+D ATAL QAGV VIRLAAGEPDFDTP IAEAGINA
Sbjct: 54 DFDVDLSLSPRVNAVKPSKTVAISDHATALFQAGVPVIRLAAGEPDFDTPAPIAEAGINA 113
Query: 120 IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD 179
IREG+TRYTPNAGT+ELR AIC KLKEENG+SYTPDQ++VSNGAKQSI QAVLAVCSPGD
Sbjct: 114 IREGYTRYTPNAGTMELRQAICRKLKEENGISYTPDQVVVSNGAKQSIAQAVLAVCSPGD 173
Query: 180 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239
EVIIPAPFWVSYPEMAR+ADATPVILPT IS+NFLLDPK+LESK+TE+SRLLILCSPSNP
Sbjct: 174 EVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNP 233
Query: 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299
TGSVYPK LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGF
Sbjct: 234 TGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGF 293
Query: 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 359
SKAFAMTGWRLGYIAGPKHFVAAC KIQSQFTSGASSI+QKA VAALGLG+AGGE VS M
Sbjct: 294 SKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTM 353
Query: 360 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 419
VKAFRERRDFLVKSF E++GVK+SEPQGAFYLF+DFS YYG EAEGFGKIE+SESLCRYL
Sbjct: 354 VKAFRERRDFLVKSFREIDGVKISEPQGAFYLFLDFSFYYGREAEGFGKIEDSESLCRYL 413
Query: 420 LDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
LD QVALVPG AFGDDTCIRISYA SLTTLQAAVER+K+ L+ L
Sbjct: 414 LDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERVKRALIPL 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| UNIPROTKB|E9L7A5 | 479 | E9L7A5 "Bifunctional aspartate | 0.940 | 0.922 | 0.800 | 4.7e-190 | |
| TAIR|locus:2060435 | 475 | AAT "AT2G22250" [Arabidopsis t | 0.987 | 0.976 | 0.713 | 2.4e-170 | |
| TIGR_CMR|GSU_1242 | 399 | GSU_1242 "aspartate aminotrans | 0.846 | 0.997 | 0.442 | 4.9e-85 | |
| TIGR_CMR|CBU_0517 | 423 | CBU_0517 "aspartate aminotrans | 0.819 | 0.910 | 0.453 | 6.2e-85 | |
| TIGR_CMR|SPO_1264 | 400 | SPO_1264 "aspartate aminotrans | 0.829 | 0.975 | 0.426 | 2e-81 | |
| UNIPROTKB|Q0BXZ8 | 403 | aatA "Aspartate aminotransfera | 0.836 | 0.975 | 0.418 | 5.2e-81 | |
| TIGR_CMR|ECH_0732 | 398 | ECH_0732 "aspartate aminotrans | 0.821 | 0.969 | 0.420 | 1.6e-77 | |
| TIGR_CMR|CHY_1491 | 392 | CHY_1491 "aspartate aminotrans | 0.825 | 0.989 | 0.402 | 1.2e-72 | |
| UNIPROTKB|Q2GK59 | 394 | aspC "Aspartate aminotransfera | 0.814 | 0.972 | 0.407 | 8.6e-72 | |
| TIGR_CMR|APH_0660 | 394 | APH_0660 "aspartate aminotrans | 0.814 | 0.972 | 0.407 | 8.6e-72 |
| UNIPROTKB|E9L7A5 E9L7A5 "Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1842 (653.5 bits), Expect = 4.7e-190, P = 4.7e-190
Identities = 361/451 (80%), Positives = 398/451 (88%)
Query: 28 PGSVSFPSRYLHNFNLNND--------RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 79
P S+SF S LH F+L + RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 80 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 139
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 140 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 199
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 320 VAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEG 379
+AACNKIQSQFTSGASSISQK E+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 380 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQVALVPGDAFGDDTCI
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVALVPGDAFGDDTCI 448
Query: 440 RISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
RISYAASL+TLQAAVERIKK L+T++P VPV
Sbjct: 449 RISYAASLSTLQAAVERIKKALVTIKPPVPV 479
|
|
| TAIR|locus:2060435 AAT "AT2G22250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1656 (588.0 bits), Expect = 2.4e-170, P = 2.4e-170
Identities = 336/471 (71%), Positives = 381/471 (80%)
Query: 7 SSTSFISNPVNFGHSKIPAQIP-GSVSF--PSRYLHNF--NLNNDRRVLRVMACSGVEEV 61
SS + IS+ G S ++ P GSV F P R ++ + N R+ + + E +
Sbjct: 5 SSVAVISSAAARGESFPDSKKPIGSVRFQQPLRLSFSYCKSGNMSSRICAMAKPNDAETL 64
Query: 62 Q--VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA 119
VD+SLSPRV ++KPSKT+ ITD A L Q+GV VIRLAAGEPDFDTP ++AEAGINA
Sbjct: 65 SSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVVAEAGINA 124
Query: 120 IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD 179
IREGFTRYT NAG ELR AIC KLKEENGLSY PDQILVSNGAKQS+LQAVLAVCSPGD
Sbjct: 125 IREGFTRYTLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPGD 184
Query: 180 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239
EVIIPAP+WVSY E AR+ADATPV++PT+IS NFLLDPK LESKLTEKSRLLILCSPSNP
Sbjct: 185 EVIIPAPYWVSYTEQARLADATPVVIPTKISNNFLLDPKDLESKLTEKSRLLILCSPSNP 244
Query: 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299
TGSVYPK+LL+EIARI+AKHPRLLVLSDEIYEHIIYAPATHTSFASLP M+ERTLTVNGF
Sbjct: 245 TGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTVNGF 304
Query: 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKM 359
SKAFAMTGWRLGY+AGPKH VAAC+K+Q Q +SGASSI+QK E V++M
Sbjct: 305 SKAFAMTGWRLGYLAGPKHIVAACSKLQGQVSSGASSIAQKAGVAALGLGKAGGETVAEM 364
Query: 360 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 419
VKA+RERRDFLVKS G+++GVK+SEPQGAFYLFIDFS YYGSEAEGFG I +S SL Y
Sbjct: 365 VKAYRERRDFLVKSLGDIKGVKISEPQGAFYLFIDFSAYYGSEAEGFGLINDSSSLALYF 424
Query: 420 LDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGVPV 470
LDK QVA+VPGDAFGDD+CIRISYA SL LQAAVE+I+K L LR V V
Sbjct: 425 LDKFQVAMVPGDAFGDDSCIRISYATSLDVLQAAVEKIRKALEPLRATVSV 475
|
|
| TIGR_CMR|GSU_1242 GSU_1242 "aspartate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 178/402 (44%), Positives = 248/402 (61%)
Query: 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF 124
+ L+ RVN ++PS T++I +A AL G+ V+ AGEPDFDTP I EAG AI GF
Sbjct: 1 MKLADRVNKIQPSPTLSIDAKAKALKAQGIDVVGFGAGEPDFDTPANIKEAGKKAIDAGF 60
Query: 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 184
T+Y P G +L+ AI K+K ++GL YT D+I V+ GAK ++ A+ GDEVIIP
Sbjct: 61 TKYMPVGGADDLKDAIIAKMKRDHGLEYTRDEISVACGAKHTLYNISQALIQEGDEVIIP 120
Query: 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P+WVSYP+ +A TPV + T S F + + LE +T ++ +IL SP NPTGS Y
Sbjct: 121 GPYWVSYPDQIVLAGGTPVFIMTDESTGFKITAEQLEKAITPRTVYVILNSPCNPTGSTY 180
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAF 303
K+ L +A ++ KHP + V+SD+IYE ++Y + + P + +RT+ VNG SKA+
Sbjct: 181 TKDELKALAAVLLKHPHVYVVSDDIYEKLLYDGLEFCNIPMACPELKDRTIIVNGVSKAY 240
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAF 363
+MTGWR+GY GPK +AA K+QSQ TS A+SI+QK E V++MVK F
Sbjct: 241 SMTGWRIGYACGPKALMAAMTKMQSQSTSNATSIAQKASVEALNGPQ---EPVAEMVKEF 297
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
+RR ++V + GV + GAFY F +FS YG KIENS YLL+ A
Sbjct: 298 EKRRTYIVDRLNAIPGVTCFKSTGAFYAFPNFSGVYGKTTPAGKKIENSSDFAAYLLEDA 357
Query: 424 QVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465
+VALVPG AFGDD R+SYA SL T++ ++RI++ + L+
Sbjct: 358 KVALVPGIAFGDDRYARLSYATSLETIKKGLDRIEEAIGNLK 399
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| TIGR_CMR|CBU_0517 CBU_0517 "aspartate aminotransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 179/395 (45%), Positives = 252/395 (63%)
Query: 64 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
DV LS R ++PS T+A++D A L G VI L+AGEPDFDTP I ++ I AI+EG
Sbjct: 32 DV-LSVRAQQLEPSVTLAVSDLARELLNKGHDVISLSAGEPDFDTPDFIKQSAIKAIQEG 90
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 183
FT+YT GT L++AI HKLK +N L+Y P +ILVS GAKQSI ++ + GDE II
Sbjct: 91 FTKYTNVDGTPALKAAIVHKLKRDNHLNYEPSEILVSGGAKQSIYNVLMGTLNAGDEAII 150
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
PAP+WVSYP M ++A+A P+I+ I +NF L P L +T +SRLLIL SP+NP+G
Sbjct: 151 PAPYWVSYPPMVQLAEAKPIIISATIDQNFKLTPGQLSQAITPQSRLLILNSPNNPSGVA 210
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKA 302
Y ++ L +A ++ +HP++L+LSDEIYE+I++ + ++ P + +RT+ +NG SKA
Sbjct: 211 YTESELKALADVLMEHPQILILSDEIYEYILWGQNRFVNILNVCPELRDRTIIINGASKA 270
Query: 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKA 362
+AMTGWR+GY AGPK + A KIQSQ TS +SI+Q + M +A
Sbjct: 271 YAMTGWRIGYAAGPKSIIQAMKKIQSQSTSSPNSIAQVAATTALGAQRGDF---AYMYEA 327
Query: 363 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422
++ R D ++K+ +++GV GAFYLF D S + + G +E+ L YLLDK
Sbjct: 328 YKTRHDLVLKALNQMKGVHCIPADGAFYLFPDVS----AAIQQLG-LEDDIKLGTYLLDK 382
Query: 423 AQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457
+VA+VPG AFG +R+S A S LQ A+ER+
Sbjct: 383 TKVAVVPGSAFGSPGHVRLSCATSTEKLQEALERL 417
|
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| TIGR_CMR|SPO_1264 SPO_1264 "aspartate aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 168/394 (42%), Positives = 242/394 (61%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
LS ++ VKPS TVA+T +A L G +I L+AGEPDFDTP I +A AI G T+
Sbjct: 4 LSATLSRVKPSPTVAMTAKAAELKAGGRDIIGLSAGEPDFDTPQNIKDAATAAIAAGKTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G +EL+ A+C K++ ++GLSYTP Q+ V +G KQ++ A++A +PGDEVIIPAP
Sbjct: 64 YTAPDGIIELKQAVCAKMQRDHGLSYTPAQVSVGSGGKQTLYNALMATLNPGDEVIIPAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M + TPV++ T + F L P LE+ +T +++ I SPSNPTG+ Y +
Sbjct: 124 YWVSYPDMVLLGGGTPVVVETALESAFKLTPAQLEAAITPRTKWFIFNSPSNPTGAGYSR 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
+ L + ++ +HP + V+SD++YEH+ Y + A + PG++ERTLT NG SKA+AM
Sbjct: 184 DELKGLTDVLMRHPHVWVMSDDMYEHLAYDGFAFCTPAQVEPGLYERTLTCNGTSKAYAM 243
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 365
TGWR+GY AGP +AA KIQSQ TS +ISQ E ++ F+
Sbjct: 244 TGWRIGYAAGPVGLIAAMRKIQSQSTSNPCTISQ---WAAVEALNGTQEFLAPNNALFKR 300
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD ++ +EG+ P+GAFY++ + G +I++ E+ C LL++A V
Sbjct: 301 RRDLVLSMLNAIEGIDCPTPEGAFYVYPSIAGLIGKTTPKGTRIDSDETFCTALLEEADV 360
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
A+V G AFG R+SYAAS L A RI++
Sbjct: 361 AVVFGAAFGLSPNFRVSYAASDAALTEACTRIQR 394
|
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| UNIPROTKB|Q0BXZ8 aatA "Aspartate aminotransferase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 166/397 (41%), Positives = 242/397 (60%)
Query: 64 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
D+ LS + VKPS T+A+T +A + + G+ VI L AGEPDFDTP I EA I A+REG
Sbjct: 4 DIRLSDAIARVKPSATIAVTTKANEMKRQGLDVIGLGAGEPDFDTPENIKEAAIRAMREG 63
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 183
T+YTP+ G EL+ AI K ENGL+Y P Q+ VS G K + A +A + GDEV+I
Sbjct: 64 KTKYTPSDGIPELKEAIVAKFARENGLTYKPSQVNVSPGGKAVLFNAFMATLNAGDEVVI 123
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
PAP+WVSYPEM + ATPV +P + L P+ LE+ +T K++ LIL SPSNPTG+
Sbjct: 124 PAPYWVSYPEMVLLCGATPVAVPCGADTAYKLSPEKLEAAITPKTKWLILNSPSNPTGAA 183
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKA 302
Y L +A ++ +HP++ +L+D++YEH++Y + + A + P +++RTLT+NG SKA
Sbjct: 184 YTGAELKALADVLLRHPQVWILTDDMYEHLVYDGFEYKTIAQVEPALYDRTLTMNGVSKA 243
Query: 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKA 362
+AMTGWR+GY AGP+ + A K+ Q TS SISQ V A
Sbjct: 244 YAMTGWRIGYAAGPEKLIGAMRKVMDQSTSNPCSISQWASVEALNGPQDFLPVFRA---A 300
Query: 363 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422
+ +RR+ +V + G+ +P+GAFY++ + G + G I++ ++ LL++
Sbjct: 301 YAKRRNLMVDGLNQAAGIVCPKPEGAFYVYPSCAGLIGKKTAGGAVIDSDKTFAAELLEQ 360
Query: 423 AQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
+VA+V G+AFG RISYA S L A+ RI++
Sbjct: 361 EKVAIVFGEAFGLPETFRISYATSDAALTEALVRIQR 397
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| TIGR_CMR|ECH_0732 ECH_0732 "aspartate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 165/392 (42%), Positives = 233/392 (59%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
++ R+ +KPS T+ I +QA L +GV VI L+AGEPDFDTP I +A I+AI G T+
Sbjct: 4 IAERMGCIKPSPTLEIANQAQKLKMSGVDVISLSAGEPDFDTPQHIKQAAIDAINSGKTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G +EL+ I + K+++ L Y +QI V NGAKQ I +A + GDEVIIP+P
Sbjct: 64 YTAVNGIIELKKVIIDRFKQDHDLIYNVNQISVGNGAKQCIYNLFMATINSGDEVIIPSP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP++ +I+ PVI+ E F L P +LES +TEK++ LI+ SP+NPTG VY
Sbjct: 124 YWVSYPDVVKISGGNPVIVDC--GETFKLTPDILESVITEKTKWLIMNSPNNPTGLVYTY 181
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L IA ++ K+P + V++D+IY IIY + A + P +++R T+NG SKA+AM
Sbjct: 182 EELKSIAEVLLKYPNIYVMTDDIYSKIIYDDLEFFTIAQVEPRLYDRVFTINGVSKAYAM 241
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 365
TGWR+GYIAG ++A + IQSQ T+ +SI+Q E + + K F
Sbjct: 242 TGWRIGYIAGDSRVISAISVIQSQSTTNPNSIAQ---FASIQALAGDQEFLKERNKIFAA 298
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD +V + + +PQGAFY+FI G I ++ +YLL+ V
Sbjct: 299 RRDMMVDMVNNTSLLSVKKPQGAFYVFISCKKLIGKSTRNGLVINSAMDFTKYLLEDYNV 358
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457
A+VPG+AFG RISYA S L A +RI
Sbjct: 359 AVVPGEAFGAQGFFRISYATSTEHLSKACDRI 390
|
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| TIGR_CMR|CHY_1491 CHY_1491 "aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 160/398 (40%), Positives = 234/398 (58%)
Query: 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY 127
S R + S T+AI +A L + G VI GEPDFDTP I EA INA+R+G T+Y
Sbjct: 3 SERALQIGESPTLAIDKKAKELIKQGKKVINFGVGEPDFDTPEYIKEAAINALRQGKTKY 62
Query: 128 TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187
TP G ELR I L + G++Y +++V+ GAK + + +PGDEVIIP P+
Sbjct: 63 TPVGGIPELRKKIAEYLTQRTGVNYEDQEVVVTCGAKHGLYNIFQVILNPGDEVIIPVPY 122
Query: 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247
WVSY E ++A P+++PT ENF L P L + L +++ +I+ SPSNPTG VY +
Sbjct: 123 WVSYVEQVKLAGGVPILVPT--GENFKLAPDKLINYLNNRTKAIIINSPSNPTGVVYSFD 180
Query: 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307
L + R++ K +L+++DEIYE I ++ + A+ P + E+T VNGFSK+ +MTG
Sbjct: 181 ELKSLGRLL-KDREILIIADEIYERIYFSEKPISFVAANPELKEKTFIVNGFSKSHSMTG 239
Query: 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERR 367
WRLGY+A + + A ++QS TS +S +Q + V KMV+ F++RR
Sbjct: 240 WRLGYVAASRQYAAKLIELQSHQTSNPTSFAQ---WGALAALTIEDDSVEKMVQEFKKRR 296
Query: 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE-SLCRYLLDKAQVA 426
DF+V EL+ +K+ EP GAFY+F +G + G KI N+ +L+ VA
Sbjct: 297 DFVVSRLQELK-LKVIEPAGAFYVFPRIDNCFGKKHSG--KIINTSIDFAEIMLEYYLVA 353
Query: 427 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
+VPG AFGDD +R+SYA SL L+ ++R++ L L
Sbjct: 354 MVPGIAFGDDRFVRLSYALSLADLKEGLKRLETFLKNL 391
|
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| UNIPROTKB|Q2GK59 aspC "Aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 160/393 (40%), Positives = 229/393 (58%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
LS R+N +KPS T+ ++ L G+ +I L AGEPDFDTP + +A I AI G T+
Sbjct: 2 LSERMNCIKPSPTLELSRLTLELRAQGLDIISLGAGEPDFDTPDHVKDAAIAAINAGKTK 61
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YTP G EL+ +I ++ + G+ Y +Q+LV GAKQ I +A + GDEVIIPAP
Sbjct: 62 YTPVEGIPELKDSIIRSVRRDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAP 121
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M +IA PVI+ + L P++L +T K++ LI+ SPSNPTG+VY +
Sbjct: 122 YWVSYPDMVKIAGGAPVIV--NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSR 179
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L IA ++ +H +LV++D+IY ++Y A + P +++R VNG SKA++M
Sbjct: 180 EELAAIAEVLKQHKHVLVITDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSM 238
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 365
TGWR+GYI G + A + IQSQ T+ A+SI+Q + +KAF
Sbjct: 239 TGWRIGYILGNAEAIKAVSTIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFAR 295
Query: 366 RRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
RRD ++ + GV ++ PQGAFY+FI G A G I + + ++LL+ +
Sbjct: 296 RRDRVMDAVLS-SGVLQADVPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLNH-R 353
Query: 425 VALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457
VA+VPG AFG RISYA S L A ERI
Sbjct: 354 VAVVPGVAFGAPNFFRISYALSDDRLSEACERI 386
|
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| TIGR_CMR|APH_0660 APH_0660 "aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 160/393 (40%), Positives = 229/393 (58%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
LS R+N +KPS T+ ++ L G+ +I L AGEPDFDTP + +A I AI G T+
Sbjct: 2 LSERMNCIKPSPTLELSRLTLELRAQGLDIISLGAGEPDFDTPDHVKDAAIAAINAGKTK 61
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YTP G EL+ +I ++ + G+ Y +Q+LV GAKQ I +A + GDEVIIPAP
Sbjct: 62 YTPVEGIPELKDSIIRSVRRDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAP 121
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYP+M +IA PVI+ + L P++L +T K++ LI+ SPSNPTG+VY +
Sbjct: 122 YWVSYPDMVKIAGGAPVIV--NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSR 179
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L IA ++ +H +LV++D+IY ++Y A + P +++R VNG SKA++M
Sbjct: 180 EELAAIAEVLKQHKHVLVITDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSM 238
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 365
TGWR+GYI G + A + IQSQ T+ A+SI+Q + +KAF
Sbjct: 239 TGWRIGYILGNAEAIKAVSTIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFAR 295
Query: 366 RRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
RRD ++ + GV ++ PQGAFY+FI G A G I + + ++LL+ +
Sbjct: 296 RRDRVMDAVLS-SGVLQADVPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLNH-R 353
Query: 425 VALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457
VA+VPG AFG RISYA S L A ERI
Sbjct: 354 VAVVPGVAFGAPNFFRISYALSDDRLSEACERI 386
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q02635 | AATA_RHIME | 2, ., 6, ., 1, ., 1 | 0.4365 | 0.8297 | 0.975 | yes | no |
| Q1RGV0 | AAT_RICBR | 2, ., 6, ., 1, ., 1 | 0.4385 | 0.8404 | 0.9899 | yes | no |
| Q56232 | AAT_THET8 | 2, ., 6, ., 1, ., 1 | 0.4307 | 0.8021 | 0.9792 | yes | no |
| P53001 | AAT1_BACSU | 2, ., 6, ., 1, ., 1 | 0.3879 | 0.8191 | 0.9796 | yes | no |
| Q4UND3 | AAT_RICFE | 2, ., 6, ., 1, ., 1 | 0.4278 | 0.8319 | 0.9559 | yes | no |
| Q5F4K8 | PAT_PINPS | 2, ., 6, ., 1, ., 1 | 0.7869 | 0.8468 | 0.8089 | N/A | no |
| E9L7A5 | PAT_PETHY | 2, ., 6, ., 1, ., 7, 9 | 0.8270 | 0.9404 | 0.9227 | N/A | no |
| O67781 | AAT_AQUAE | 2, ., 6, ., 1, ., 1 | 0.4141 | 0.8212 | 0.9796 | yes | no |
| Q9SIE1 | PAT_ARATH | 2, ., 6, ., 1, ., 7, 9 | 0.7351 | 0.9893 | 0.9789 | yes | no |
| Q68XV9 | AAT_RICTY | 2, ., 6, ., 1, ., 1 | 0.4285 | 0.8404 | 0.9899 | yes | no |
| Q972A2 | AAT_SULTO | 2, ., 6, ., 1, ., 1 | 0.3118 | 0.8063 | 0.9498 | yes | no |
| Q9V0L2 | AAT_PYRAB | 2, ., 6, ., 1, ., 1 | 0.405 | 0.8085 | 0.9768 | yes | no |
| O53870 | DAPC_MYCTU | 2, ., 6, ., 1, ., 1, 7 | 0.3041 | 0.8042 | 0.9521 | yes | no |
| Q9ZE56 | AAT_RICPR | 2, ., 6, ., 1, ., 1 | 0.4351 | 0.8276 | 0.9749 | yes | no |
| Q92JE7 | AAT_RICCN | 2, ., 6, ., 1, ., 1 | 0.4242 | 0.8340 | 0.9775 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.983 |
| 4th Layer | 2.6.1.1 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_VII0526 | hypothetical protein (410 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 0.0 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-147 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 1e-132 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-109 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 1e-107 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 1e-97 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 7e-90 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 5e-88 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 3e-81 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 5e-76 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 2e-75 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-74 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-73 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 6e-72 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 1e-70 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 8e-69 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 2e-65 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 7e-60 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-57 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 8e-56 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 3e-55 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 2e-52 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 2e-50 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 2e-45 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 7e-45 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 5e-44 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 4e-43 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 2e-42 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 3e-42 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 6e-42 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 7e-41 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 1e-40 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 2e-39 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 4e-39 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-38 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 5e-37 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 8e-35 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 3e-34 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 1e-33 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 2e-33 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 2e-32 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 6e-32 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 1e-31 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 2e-31 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 7e-27 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 1e-26 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 5e-26 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 1e-25 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 3e-24 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 8e-24 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 8e-24 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 8e-23 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 1e-22 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 3e-22 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-21 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 9e-21 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 1e-20 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-20 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 5e-20 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 9e-20 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 1e-19 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 3e-19 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 3e-19 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 1e-18 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 2e-18 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 1e-17 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 3e-17 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 3e-16 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 3e-16 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-15 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 1e-14 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 2e-14 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 4e-14 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 1e-13 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 5e-13 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 6e-13 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 1e-12 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 2e-12 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 3e-12 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 6e-12 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 1e-11 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 1e-11 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 6e-11 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 7e-11 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 1e-10 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 2e-09 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-08 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 6e-08 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 1e-07 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 1e-07 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 3e-07 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 9e-07 | |
| PLN02672 | 1082 | PLN02672, PLN02672, methionine S-methyltransferase | 2e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 3e-06 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 4e-06 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 1e-05 | |
| cd00616 | 352 | cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s | 2e-05 | |
| PRK09440 | 416 | PRK09440, avtA, valine--pyruvate transaminase; Pro | 6e-05 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 1e-04 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-04 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 3e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 3e-04 | |
| pfam01041 | 362 | pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS a | 4e-04 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 6e-04 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 6e-04 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 7e-04 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 0.001 | |
| cd00615 | 294 | cd00615, Orn_deC_like, Ornithine decarboxylase fam | 0.001 | |
| COG1982 | 557 | COG1982, LdcC, Arginine/lysine/ornithine decarboxy | 0.002 | |
| PRK11658 | 379 | PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinos | 0.003 | |
| pfam01276 | 417 | pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, ma | 0.004 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 533 bits (1376), Expect = 0.0
Identities = 200/401 (49%), Positives = 263/401 (65%), Gaps = 13/401 (3%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
LS RV+ V PS T+A+T +A L G VI L AGEPDFDTP I EA I A+ +G T+
Sbjct: 4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YTP AG ELR AI KLK +NGL Y P Q++V+ GAKQ++ A +A+ PGDEVIIPAP
Sbjct: 64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYPEM ++A PV +PT F L + LE+ +T K++ LIL SPSNPTG+VY
Sbjct: 124 YWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSP 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
L+ IA + +H + VLSDEIYE ++Y A TS ASL P + +RT+TVNGFSKA+AM
Sbjct: 184 EELEAIADVAVEHD-IWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM 242
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFR 364
TGWRLGY AGPK + A +K+QS TS +SI+Q A VAAL G + V +M +AF
Sbjct: 243 TGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAAL----NGPQDEVEEMRQAFE 298
Query: 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
ERRD +V E+ G++ +P+GAFY+F + S G I +S LL++A
Sbjct: 299 ERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------KSITDSLEFAEALLEEAG 352
Query: 425 VALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465
VA+VPG AFG +R+SYA SL L+ +ERI++ L +L+
Sbjct: 353 VAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESLK 393
|
Length = 393 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 424 bits (1093), Expect = e-147
Identities = 168/406 (41%), Positives = 243/406 (59%), Gaps = 22/406 (5%)
Query: 69 PRVNAVKPSKTVAITDQATALAQAG--VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
R+ V PS T A+ +A A A+ VI L+ GEPDF TP I EA I A+ EG T
Sbjct: 1 SRLLKVLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTH 60
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
YTP+AG ELR AI K K GL P++ I+V+ GAK+++ A LA+ +PGDEV+IP
Sbjct: 61 YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 186 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P + SY ++A PV +P EN F D + LE+ +T K++ +IL SP+NPTG+VY
Sbjct: 121 PGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY 180
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
K L I + +H ++++SDEIYE ++Y A H S L G +RT+T+N FSK +
Sbjct: 181 SKEELKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG 239
Query: 305 MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
MTGWR+G++ GP + +AA K++S TS A + +Q A +AAL G EVV +M + +
Sbjct: 240 MTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN-GPQSDEVVEEMREEY 298
Query: 364 RERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422
RERRD LV++ E+ G+ + P+GAFYLF ++ +SE + LL++
Sbjct: 299 RERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIP-----------ELLDSEEFAKKLLEE 347
Query: 423 AQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465
A VA+VPG FG+ + +R+S A S TL+ A+ R+ + L R
Sbjct: 348 AGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-132
Identities = 174/398 (43%), Positives = 241/398 (60%), Gaps = 6/398 (1%)
Query: 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP 129
RV+ +KPS + A +A L AG S++ L GEPDFDTP I +A + AI G T+YT
Sbjct: 9 RVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTL 68
Query: 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 189
GT LR AI KL+ NGL Y ++I V GAKQ+I A++A GDEVIIPAP+WV
Sbjct: 69 VNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 190 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 249
SYP+M D TPVI+ + F L P+ LE+ +T ++R LIL +PSNPTG+VY + L
Sbjct: 129 SYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAEL 188
Query: 250 DEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTG 307
+A ++ +HP +LVL+D+IY+HI + P H A+ P + +R L NG SK +AMTG
Sbjct: 189 RALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHL-LAAAPELRDRVLVTNGVSKTYAMTG 247
Query: 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367
WR+GY AGP +AA NK+QSQ +S SSISQ A AAL V++ V +++RR
Sbjct: 248 WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALN---GDQSFVTESVAVYKQRR 304
Query: 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427
D+ + + G+ P GAFYL+++ + G +E + + YLLD A VA+
Sbjct: 305 DYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAV 364
Query: 428 VPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465
V G A+G R+S A SL TL+ A RI++ + LR
Sbjct: 365 VQGTAYGLSPYFRLSIATSLETLEEACARIERAVAALR 402
|
Length = 402 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-109
Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 21/367 (5%)
Query: 97 IRLAAGEPDFDTPVLIAEAGI-NAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
I L+ GEPDF P + EA A+R G Y P+ G ELR AI L G+ P+
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
+I+V+NGA++++ + A+ +PGDEV++P P + Y AR+A A V +P FLL
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
D ++LE+ T K++LL L +P+NPTG+V + L+E+A + KH +L++SDE Y ++Y
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH-GILIISDEAYAELVY 179
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGA 334
+L +ER + + FSK F + G R+GY+ P + K+ TSG
Sbjct: 180 DGEPP-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238
Query: 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394
S++SQ A AAL G E + ++ + +R RRD L+++ EL + + +P G F+L++D
Sbjct: 239 STLSQAAAAAALD---DGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLD 295
Query: 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQA 452
+ E LL +A V + PG AFG + +R+S+A L+
Sbjct: 296 LPEG------------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEE 343
Query: 453 AVERIKK 459
A+ER+ +
Sbjct: 344 ALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = e-107
Identities = 168/392 (42%), Positives = 238/392 (60%), Gaps = 23/392 (5%)
Query: 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN 130
V +++PS D A + VI L GEPDF TP + EA I ++ +G+T YT N
Sbjct: 1 VESLQPSGIRKFFDLAANME----GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTAN 56
Query: 131 AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 189
AG LELR I LK+ +SY P+ +I+V+ GA Q++ A+ A+ +PGDEV+I P +V
Sbjct: 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFV 116
Query: 190 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 249
SY + +A PV + T + F + P +E+ +T K++ ++LCSP+NPTG+V K+ L
Sbjct: 117 SYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSEL 176
Query: 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309
+EIA IV KH L+VLSDEIY + Y A +TSFAS+ GM ERT+ ++GFSK FAMTGWR
Sbjct: 177 EEIAVIVEKH-DLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWR 234
Query: 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369
LG+IA P +F A KI A +++Q A + AL AG + V +M ++R+RR+F
Sbjct: 235 LGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEAL---RAGNDDVIRMRDSYRKRRNF 291
Query: 370 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429
V SF E+ G+ P GAFY F S+ G +SE LL + +VA+VP
Sbjct: 292 FVTSFNEI-GLTCHVPGGAFYAFPSISS------TGL----SSEEFAEQLLLEEKVAVVP 340
Query: 430 GDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
G FG+ + IR SYA SL LQ A++R+K+
Sbjct: 341 GSVFGESGEGFIRCSYATSLEQLQEAMKRMKR 372
|
Length = 378 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 1e-97
Identities = 145/402 (36%), Positives = 225/402 (55%), Gaps = 24/402 (5%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
++PRV ++ S ++ + Q ++I L G+PDF TP + EA AI E +T
Sbjct: 5 INPRVKDIQISGIRQFSN----MVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTS 60
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
YT NAG LELR A C+ +K++ L Y+P+ +I+V+ GA ++I A + PG EVI+PA
Sbjct: 61 YTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPA 120
Query: 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245
P + Y + R+ A PV + TR S F L + LE+ +TEK+R ++L PSNPTG
Sbjct: 121 PIYPGYEPIIRLCGAKPVFIDTR-STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLS 179
Query: 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
K L +IA ++ K + VLSDEIY ++Y HTS A P M E+T+ +NG SK+ +M
Sbjct: 180 KEELQDIADVL-KDKNIFVLSDEIYSELVYE-QPHTSIAHFPEMREKTIVINGLSKSHSM 237
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+G++ P + K+ + ASSISQ A + AL G ++ M +++
Sbjct: 238 TGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKM---MRHQYKK 294
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD++ + G+ + +P GAFYLF F +S L+++A +
Sbjct: 295 RRDYVYNRLISM-GLDVEKPTGAFYLFPSIGH--------FT--MSSFDFALDLVEEAGL 343
Query: 426 ALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465
A+VPG AF + + +R+SYA S+ TL+ ++R++ L
Sbjct: 344 AVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKA 385
|
Length = 387 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 7e-90
Identities = 127/369 (34%), Positives = 203/369 (55%), Gaps = 23/369 (6%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP- 154
+++L GEPDF TP + EA AI + YT AG LELR A +KE+ L Y P
Sbjct: 32 ILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPE 91
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
++ILV+ GA +++ ++ A+ PGD+V++PAP + Y + + A V + T +F+
Sbjct: 92 NEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFV 150
Query: 215 LDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271
L P++LE + E K + +IL P+NPTG Y + + +A ++ K+ + V+SDE+Y
Sbjct: 151 LTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYD-IFVISDEVYS 209
Query: 272 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331
+ Y H S A + ++T+ +NG SK+ AMTGWR+G I P F A K
Sbjct: 210 ELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLV 267
Query: 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391
+ A++++Q A V AL G M K + +RRD++++ +L G K+ +P GAFY+
Sbjct: 268 TAATTMAQFAAVEALTNGKDDALP---MKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYI 323
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTT 449
F Y ++S + K VA +PG AFG + +R+SYAAS+ T
Sbjct: 324 FAKIPAGYN---------QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMET 374
Query: 450 LQAAVERIK 458
++ A++R+K
Sbjct: 375 IKEAMKRLK 383
|
Length = 391 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 5e-88
Identities = 149/400 (37%), Positives = 223/400 (55%), Gaps = 26/400 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
++ R+N ++ SK + ++A+ + +VI L GEPDFDTP I EA A+ EG+T
Sbjct: 10 IAGRINLIQRSKIRELFERASKME----NVISLGIGEPDFDTPKNIKEAAKRALDEGWTH 65
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YTPNAG ELR AI K+ G+ D ++V+ GA ++ A ++ GDEVIIP P
Sbjct: 66 YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDP 125
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+V Y E A+IA+A P+ +P R F DP L +T+++R++++ P+NPTG+ K
Sbjct: 126 AFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDK 185
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH---TSFASLPGMWERTLTVNGFSKAF 303
+ IA I A+ + +LSDE YEH +Y A H +A + T+ N FSK F
Sbjct: 186 EVAKAIADI-AEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-----DNTILANSFSKTF 239
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
AMTGWRLG++ P+ + K+ + +S Q AG+ AL + V +M K +
Sbjct: 240 AMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEAL-RSKESWKAVEEMRKEY 298
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
ERR ++K E+ +K+ EP+GAFY+F + +SE +LL+KA
Sbjct: 299 NERRKLVLKRLKEMPHIKVFEPKGAFYVFANID----------ETGMSSEDFAEWLLEKA 348
Query: 424 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461
+V ++PG AFG + IRISYA S L A+ER++K L
Sbjct: 349 RVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKAL 388
|
Length = 391 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 3e-81
Identities = 121/374 (32%), Positives = 197/374 (52%), Gaps = 17/374 (4%)
Query: 88 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147
LA+ +I L+ G+PD T I A ++G TRYT + G +EL I +
Sbjct: 23 TLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKN 82
Query: 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 207
LS+ ++I+ + GA + A+ ++ PGDEVII P++ Y + + P+IL T
Sbjct: 83 YDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILET 142
Query: 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+ F ++ K LE+ +T K++ +IL SP+NPTG+V+ K L+EIA+I ++ L ++SD
Sbjct: 143 YEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISD 201
Query: 268 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327
E+Y+ + A+L GM ERT+T FSK FAMTGWR+GY+ P + + I
Sbjct: 202 EVYDGFSFY-EDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIIN 260
Query: 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387
A +ISQ+A + AL +V + + F++R ++ K + + + P+G
Sbjct: 261 EGICFSAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKG 317
Query: 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA 445
+ Y FI+ G +S C LL +A V ++PG AFG+ + IR++
Sbjct: 318 SIYAFINIK------KTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV 367
Query: 446 SLTTLQAAVERIKK 459
+ L+ A RI+K
Sbjct: 368 GIEVLEEAFNRIEK 381
|
Length = 384 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 5e-76
Identities = 125/399 (31%), Positives = 188/399 (47%), Gaps = 22/399 (5%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
S R ++P +A+ +A L AG VI L GEPDF T I AG A+ G TR
Sbjct: 5 YSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTR 64
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G LR AI + G+ P++ILV+ G ++L A + PG ++ P
Sbjct: 65 YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADP 124
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+ R+ + ++P + L P ++E + ++ SP+NPTG++ +
Sbjct: 125 GYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSR 184
Query: 247 NLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
+ L +++ + A+ L+V DEIY + Y AS+ + + +N FSK F M
Sbjct: 185 DELAALSQALRARGGHLVV--DEIYHGLTYG----VDAASVLEVDDDAFVLNSFSKYFGM 238
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWRLG++ P V K+ AS+ +Q A +A ++ F
Sbjct: 239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP--ETLAILEARRAEFAR 296
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRDFL+ + EL EPQGAFYL+ D S + G ++ + CR+ L+ V
Sbjct: 297 RRDFLLPALRELGFGIAVEPQGAFYLYADISAFGG----------DAFAFCRHFLETEHV 346
Query: 426 ALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGL 461
A PG FG +R +Y SL LQ AVERI +GL
Sbjct: 347 AFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGL 385
|
Length = 387 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 2e-75
Identities = 129/401 (32%), Positives = 196/401 (48%), Gaps = 25/401 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
P A+ S + A A G V+ L GE D TP I +A A+ +G T
Sbjct: 1 ARPAARALPESGIREV-----ANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGET 55
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
YT N G ELR A+ + +G++ P++I V++ Q+++ A A+ PGDEV+
Sbjct: 56 FYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVT 115
Query: 186 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P W + +I A V +P + LD L + +T ++R L + SP+NPTG
Sbjct: 116 PLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTA 175
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAF 303
++ L I +H L +++DE+YE + YAP SF + +R + VN FSK +
Sbjct: 176 SRDDLRAILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW 234
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
AMTGWRLG++ P K+ TS + Q+A VAAL G + V+++V
Sbjct: 235 AMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALD---EGEDFVAELVARL 291
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
R RD LV + L GV++++P GA Y F G +S +L + L+D+A
Sbjct: 292 RRSRDHLVDALRALPGVEVAKPDGAMYAFF--------RIPGV---TDSLALAKRLVDEA 340
Query: 424 QVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLL 462
+ L PG AFG +R +A L AVER+++ L
Sbjct: 341 GLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381
|
Length = 382 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 6e-74
Identities = 106/374 (28%), Positives = 166/374 (44%), Gaps = 31/374 (8%)
Query: 96 VIRLAAGEPDFDTPVLI----AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 151
I L + E D+ L AE A Y P G ELR A+ L L
Sbjct: 3 KINLGSNEYLGDSGTLPAVAKAEKDALAGG-TRNLYGPTDGLPELREALAKFLGRSPVLK 61
Query: 152 YTP-DQILVSNGAKQSILQAV-LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 209
++ +GA +I + L +PGD +++PAP + SY + R+A V P
Sbjct: 62 LDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYS 121
Query: 210 SENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 266
S +F LD LE+ L TE +++++ SP NPTG+V L+++ + +H +L+L
Sbjct: 122 SNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH-NILLLV 180
Query: 267 DEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324
DE Y ++ + +L G L V FSKAF + GWR+GYI G ++
Sbjct: 181 DEAYAGFVFGSLDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVISQLR 238
Query: 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384
K+ F S S+ Q A AAL + +M + +ERRD+L G+ +
Sbjct: 239 KLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSVLP 295
Query: 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444
Q F+L E + +L + LL++ V + PG +FG +RI+ A
Sbjct: 296 SQAGFFLLTGLDP------------EAALALAQVLLEEVGVYVTPGSSFGGPGWLRITVA 343
Query: 445 A-SLTTLQAAVERI 457
+ L+ +E I
Sbjct: 344 GGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 1e-73
Identities = 113/345 (32%), Positives = 186/345 (53%), Gaps = 24/345 (6%)
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIP 184
+Y G L AI KL+++NG+ +Q I+V+ G+ + + A+LA+ PGDE+I+
Sbjct: 60 KYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILN 119
Query: 185 APFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
P++ ++ EMA +A P+++PT +N+ L P+ +E +T K+R ++ SP+NPTG V
Sbjct: 120 TPYYFNH-EMAITMAGCQPILVPT--DDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVV 176
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303
YP+ LL + +I A+H + +SDE YE+ Y H S S+PG T+++ SKA+
Sbjct: 177 YPEALLRAVNQICAEH-GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAY 235
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
WR+GY+ P H + A KIQ +SQ A + AL G + +
Sbjct: 236 GFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGAL---QVGKSYCQQHLPEI 292
Query: 364 RERRDFLVKSFGELEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422
+ R L+KS G+L+ + GAFY F+ +T + F L + L+ +
Sbjct: 293 AQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNT----DLNDF-------ELVKQLIRE 341
Query: 423 AQVALVPGDAFG-DDTC-IRISYAA-SLTTLQAAVERIKKGLLTL 464
+VA++PG FG + C +RI+Y A T + +ER+ +GL T+
Sbjct: 342 YRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI 386
|
Length = 389 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 6e-72
Identities = 124/380 (32%), Positives = 190/380 (50%), Gaps = 22/380 (5%)
Query: 87 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146
+ALA + L G PD D P + EA AI G +Y P G ELR+AI + +
Sbjct: 18 SALA-VRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRR 76
Query: 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 205
GL Y PD ++LV+ GA ++I AVL + PGDEV++ P++ SY + +A A V +
Sbjct: 77 RYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPV 136
Query: 206 PTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264
P F LD L + +T ++R LI+ SP NPTG+V L IA + +H LLV
Sbjct: 137 PLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHD-LLV 195
Query: 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324
++DE+YEH+++ A H A+LPGM ERT+T++ +K F +TGW++G+ GP +AA
Sbjct: 196 ITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVR 255
Query: 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384
+ T + Q A AL A V+ + + + +RD L E G ++ +
Sbjct: 256 AAKQYLTYVGGAPFQPAVAHALDHEDA---WVAALRDSLQAKRDRLAAGLAEA-GFEVHD 311
Query: 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT-----CI 439
G ++L D + F CR L ++ VA +P F D +
Sbjct: 312 SAGTYFLCADPRPLGYDDGTEF---------CRALPERVGVAAIPMSVFYDPADAWNHLV 362
Query: 440 RISYAASLTTLQAAVERIKK 459
R ++ TL A+ R++
Sbjct: 363 RFAFCKRDDTLDEAIRRLRA 382
|
Length = 387 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 1e-70
Identities = 124/412 (30%), Positives = 209/412 (50%), Gaps = 41/412 (9%)
Query: 67 LSPRVNAVKPS---KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
+S RV + S K V D+A + G+ V L G+PD TP + EA I E
Sbjct: 3 ISKRVLNMPASPIRKLVPYADEA---KKRGIKVYHLNIGQPDIKTPEVFFEA-IKNYDEE 58
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 183
Y+ + G ELR A K ++ G+ PD+IL++NG ++IL A++A+C PGDE+++
Sbjct: 59 VLAYSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILV 117
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPK-VLESKLTEKSRLLILCSPSNPTGS 242
P PF+ +Y A A V + T+I E F L K +E +T K++ +++ +P NPTG
Sbjct: 118 PEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGV 177
Query: 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302
VY K L+ +A I KH L ++SDE+Y +Y +TS SL G+ +R + ++ SK
Sbjct: 178 VYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR 236
Query: 303 FAMTGWRLGYIAGP-KHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
++ G R+G + K +AA K+ Q++ + ++ Q A L ++
Sbjct: 237 YSACGARIGCLISKNKELIAAAMKLCQARLS--PPTLEQIGAAALLDT---PESYFDEVR 291
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420
+ +++RRD L + ++ GV +P+GAFY+ ++++E ++LL
Sbjct: 292 EEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLP------------VDDAEDFAKWLL 339
Query: 421 -----DKAQVALVPGDAF------GDDTCIRISYAASLTTLQAAVERIKKGL 461
+ V + P F G + IRI+Y + L+ A+E +K+ L
Sbjct: 340 TDFNYNGETVMVAPASGFYATPGLGKNE-IRIAYVLNEEDLKRAMEILKEAL 390
|
Length = 397 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 8e-69
Identities = 141/408 (34%), Positives = 211/408 (51%), Gaps = 40/408 (9%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
L+ RV+A++P + + +A AL +AG +I + GEPDF P + EA A+R G T+
Sbjct: 3 LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQ 62
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G LR AI GL P++I+V+ GA ++L A LA+ GDEV++P P
Sbjct: 63 YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122
Query: 187 FWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG-S 242
SYP A+ PV++P+ +E F L +E+ E++R ++L SPSNPTG S
Sbjct: 123 ---SYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTS 179
Query: 243 VYPKNLLDEIARIVA--KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
+ P DE+ RIV + + DEIY+ + Y A ++ + + + +T+N FS
Sbjct: 180 IAP----DELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALS----LGDDVITINSFS 231
Query: 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVA-----ALGLGYAGGEV 355
K F MTGWRLG++ P+ V K+ AS+++Q A +A L +
Sbjct: 232 KYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTL-------AI 284
Query: 356 VSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414
+ F+ RRDF+V + L G K+ P GAFY++ D A S +
Sbjct: 285 YERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPAAGD------SAA 337
Query: 415 LCRYLLDKAQVALVPGDAFGDDTC---IRISYAASLTTLQAAVERIKK 459
L + +L A V LVPG FG IR+SYA S++ L+ AV R+ K
Sbjct: 338 LTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGK 385
|
Length = 388 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-65
Identities = 124/403 (30%), Positives = 198/403 (49%), Gaps = 31/403 (7%)
Query: 74 VKPSKTV-----AITD---QATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIRE 122
++ S+ AI D A L + G+ VIRL G+P DF P + EA AI+E
Sbjct: 2 IRASERAMGVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKE 61
Query: 123 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 182
G Y P+ G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE++
Sbjct: 62 GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEIL 121
Query: 183 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242
IP P + Y + + PV T E + D + K+TEK++ + + +P+NPTG+
Sbjct: 122 IPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGA 181
Query: 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302
+Y K L EI I +H L V+SDEIY+ + Y H S SL + +NG SK
Sbjct: 182 LYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYE-GKHVSPGSLTKD-VPVIVMNGLSKV 238
Query: 303 FAMTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
+ TGWRLGYI P+ +A + + + A AA+ + + + +
Sbjct: 239 YFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYM 298
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRY 418
K +ERRD++ K E+ G+ ++PQGAFY+F I+ G ++ +
Sbjct: 299 KKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIE-----------EGPWKDDKEFVLD 347
Query: 419 LLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
+L +A V V G FG+ R+ + + L+ A++R ++
Sbjct: 348 VLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEE 390
|
Length = 398 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 7e-60
Identities = 119/371 (32%), Positives = 199/371 (53%), Gaps = 22/371 (5%)
Query: 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD- 155
I L G P+FD P + EA I AIR+G +Y G EL SAI + K++ GL P+
Sbjct: 57 INLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEK 116
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
++ V++G ++I +L + +PGDEVI+ APF+ SY +A A + R +F +
Sbjct: 117 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR-PPDFAV 175
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
L++ T K+R +++ +P NPTG ++ + L+ IA + ++ +L +DE+Y+ + +
Sbjct: 176 PEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAF 234
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335
H S ASLPGM+ERT+T+N K F++TGW++G+ P H + S T +
Sbjct: 235 E-GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATA 293
Query: 336 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395
+ Q A VAAL A ++ + + ++D LV+ E+ G K+ G +++ +D
Sbjct: 294 TPMQWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDH 349
Query: 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-----TCIRISYAASLTTL 450
+ + GF EN + C YL+++ VA +P F + +R ++ TL
Sbjct: 350 TPF------GF---ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETL 400
Query: 451 QAAVERIKKGL 461
+AAVER+K L
Sbjct: 401 RAAVERMKTKL 411
|
Length = 413 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 2e-57
Identities = 116/398 (29%), Positives = 185/398 (46%), Gaps = 22/398 (5%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
L+ R+ + P I D+ A +A GV VI L G+PD TP I EA A
Sbjct: 2 LADRIENLPPYLFAEI-DKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPEN 60
Query: 126 -RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 183
RY G L R A+ K G+ P+ ++L G+K+ I LA +PGD V++
Sbjct: 61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLV 120
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
P P + Y A P +P + FL D + + +K++L+ + P+NPTG+V
Sbjct: 121 PDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAV 180
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303
P E+ ++ ++V D Y I + SF + G + + + SK +
Sbjct: 181 APLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY 239
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
MTGWR+G G +A K+++ SG Q A +AAL +VV ++ K +
Sbjct: 240 NMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVKEIRKIY 296
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
+ RRD L+++ ++ G+ + +P+ FY+++ EG+ S LL++
Sbjct: 297 QRRRDLLLEALKKI-GIDVEKPKATFYVWV-------PVPEGY----TSAEFAARLLEET 344
Query: 424 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
V + PG FG+ + IRIS L+ AV RIKK
Sbjct: 345 GVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 8e-56
Identities = 111/381 (29%), Positives = 170/381 (44%), Gaps = 57/381 (14%)
Query: 102 GEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158
G P P + EA E G Y PNAG E+R AI L G T D I+
Sbjct: 41 GNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIV 100
Query: 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 218
++ GA ++ A+ A+ +PGDEVI+ AP++V Y V++PT ++ F D
Sbjct: 101 MTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQPDLD 159
Query: 219 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEH 272
LE+ +T K++ +I+ SP+NPTG VY + L +A ++ + P + ++SDE Y
Sbjct: 160 ALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRP-IYLISDEPYRE 218
Query: 273 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA------GPKHFVAACNKI 326
I+Y A + ++ ++ V FSK+ ++ G R+GYIA VAA
Sbjct: 219 IVYDGAE---VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALV-- 273
Query: 327 QSQFTSG------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380
F + A ++ Q+ L V V ++ RD L EL G
Sbjct: 274 ---FANRILGFVNAPALMQRVVAKCL------DATVD--VSIYKRNRDLLYDGLTEL-GF 321
Query: 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTC 438
+ +PQGAFYLF K E+ + C K + LVPG FG
Sbjct: 322 ECVKPQGAFYLFP--------------KSPEEDDVAFCE-KAKKHNLLLVPGSGFGCPGY 366
Query: 439 IRISYAASLTTLQAAVERIKK 459
R+SY T++ ++ +K
Sbjct: 367 FRLSYCVDTETIERSLPAFEK 387
|
Length = 394 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 3e-55
Identities = 122/398 (30%), Positives = 191/398 (47%), Gaps = 22/398 (5%)
Query: 67 LSPRVNAVKPSKTVAITDQATA-LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
L+ R+ + P I D+ A GV VI L G+PD TP I EA A+ +
Sbjct: 4 LADRIKNLPPYLFAEI-DKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPEN 62
Query: 126 -RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 183
+Y G LE R A+ K G+ P+ +++ G+K+ I LA +PGD V++
Sbjct: 63 HQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLV 122
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
P P + Y A P +P + FL D + + +K++L+ + P+NPTG+V
Sbjct: 123 PDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAV 182
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303
+E+ K+ ++V D Y I Y SF +PG + + + SK +
Sbjct: 183 ADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY 241
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
MTGWR+G+ G +A K++S SG Q+AG+AAL EVV ++ K +
Sbjct: 242 NMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIY 298
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
+ERRD LV+ +L G+++ P+ FY++ +G+ S LLDKA
Sbjct: 299 QERRDILVEGLRKL-GLEVEPPKATFYVWAPVP-------KGY----TSAEFATLLLDKA 346
Query: 424 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
V + PG+ FG+ + RI+ ++ AVERIKK
Sbjct: 347 GVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384
|
Length = 385 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 2e-52
Identities = 107/394 (27%), Positives = 187/394 (47%), Gaps = 20/394 (5%)
Query: 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT 128
N V I + + LA+ I L G PD P + A +A+ +G +Y
Sbjct: 2 KMGNPVFADLPTTIFEVMSQLAREH-GAINLGQGFPDDPGPEDVRRAAADALLDGSNQYP 60
Query: 129 PNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187
P G ELR A+ GL P+ +++V++GA +++ A+LA+ PGDEV++ P
Sbjct: 61 PMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPL 120
Query: 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247
+ +Y + R A P ++ ++ L L + + +++ ++L +P NP G V+P+
Sbjct: 121 YDAYLPLIRRAGGVPRLVRLE-PPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPRE 179
Query: 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307
L +A +H + + DE++EH+++ H +LPGM ERT+ + K F++TG
Sbjct: 180 ELALLAEFCQRH-DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238
Query: 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367
W++G++ + K QF + + + +A V A GLG M R
Sbjct: 239 WKVGFVCAAPPLLRVLAKAH-QFLTFTTPPNLQAAV-AYGLGKPDD-YFEGMRADLARSR 295
Query: 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427
D L + G + QG ++L +D + G E+ + CR L+++A VA
Sbjct: 296 DRLAAGLRRI-GFPVLPSQGTYFLTVDLA--------PLGLAEDDVAFCRRLVEEAGVAA 346
Query: 428 VPGDAFGDD----TCIRISYAASLTTLQAAVERI 457
+P AF ++ + +R +A TL AVER+
Sbjct: 347 IPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERL 380
|
Length = 387 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 2e-50
Identities = 112/402 (27%), Positives = 183/402 (45%), Gaps = 47/402 (11%)
Query: 76 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE 135
P+ I +ALA I L+ G PDFD P + EA A+ G +Y P G
Sbjct: 13 PNVGTTIFTVMSALAAE-HGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAA 71
Query: 136 LRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 194
LR AI K G Y D +I V+ GA +++ A+LA+ PGDEVI+ P + SY
Sbjct: 72 LREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPA 131
Query: 195 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254
+A V + + +F +D + + ++ ++RL+IL +P NP+G+V+ + + +
Sbjct: 132 IELAGGRAVRVALQ-PPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQ 190
Query: 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314
++A + VLSDE+YEHI++ A H S P + ER V+ F K + +TGW++GY
Sbjct: 191 LIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCV 249
Query: 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAA---------LGLGYAGGEVVSKMVKAF-R 364
P A K+ Q+ + + + +A L L AF +
Sbjct: 250 APAALSAEFRKVH-QYNTFTVNTPAQLALADYLRAEPEHYLELP------------AFYQ 296
Query: 365 ERRDFLVKSFGELEG--VKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLD 421
+RD + L K+ +G ++ +D+S + E C++L
Sbjct: 297 AKRDRFRAA---LANSRFKLLPCEGTYFQLVDYSAISDLDDVE----------FCQWLTR 343
Query: 422 KAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKK 459
+ VA +P F +R+ +A TL AA ER+ +
Sbjct: 344 EHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385
|
Length = 386 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-45
Identities = 110/371 (29%), Positives = 186/371 (50%), Gaps = 31/371 (8%)
Query: 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD- 155
+ L+ G P+F + E A+R+G +Y P AG LR A+ K + G Y P
Sbjct: 32 LNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPAS 91
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
++ V A + + A+ A+ PGDEVI P + SY + R+ ATPV + E+F +
Sbjct: 92 EVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRV 150
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
+ + + +T ++R++I+ +P NP+ +V+ L +A++ ++ +++LSDE+YEH+++
Sbjct: 151 NWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLT-RNTDIVILSDEVYEHVVF 209
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335
A H S A + ER++ V+ F K++ +TGWR+GY P + K+ A
Sbjct: 210 DGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSAD 269
Query: 336 SISQKAGVAALG--LGYAGGEVVSKMVKAFRER-RDFLVKSFGELEG--VKMSEPQGAFY 390
+ Q A AL Y G + AF +R RD L + EL G ++ +G+F+
Sbjct: 270 TPMQHAFAEALAEPASYLG-------LGAFYQRKRDLLAR---ELAGSRFELLPSEGSFF 319
Query: 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---GDDT-CIRISYAAS 446
+ F F +S+ + R + D A+VA +P AF G DT IR+S++
Sbjct: 320 MLARFR--------HFSDESDSDFVLRLIRD-ARVATIPLSAFYTDGTDTGLIRLSFSKD 370
Query: 447 LTTLQAAVERI 457
TL R+
Sbjct: 371 DATLVEGARRL 381
|
Length = 384 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 7e-45
Identities = 105/376 (27%), Positives = 173/376 (46%), Gaps = 38/376 (10%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
DF TP I EA + G Y G+ EL +AI H K+ + P+ I+ G
Sbjct: 36 DFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVV 93
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-------PVILPTRISENFLLDP 217
I A+ A+ PGD V+I P YP P++ + +D
Sbjct: 94 PGISLAIRALTKPGDGVVIQTP---VYPPFYNAIKLNGRKVIENPLVED---DGRYEIDF 147
Query: 218 KVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 276
LE E+ +L ILC+P NPTG V+ K L +IA + +H + V+SDEI+ ++
Sbjct: 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHADLVLG 206
Query: 277 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 333
H FASL + ++T+ SK F + G + Y I+ + +++ G
Sbjct: 207 GHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHG 266
Query: 334 ASSISQKAGVAALGLGYA-GGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 391
S++ A AA Y G + ++++ ++ RD++ + L GVK++EPQG +
Sbjct: 267 PSALGIIATEAA----YNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLA 322
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTT 449
++D + L +LL++A+VAL PG FG+ +R+++A
Sbjct: 323 WLDCREL----------GLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAI 372
Query: 450 LQAAVERIKKGLLTLR 465
L+ A+ER+K+ L R
Sbjct: 373 LEEALERLKRALKKRR 388
|
Length = 388 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 5e-44
Identities = 117/411 (28%), Positives = 190/411 (46%), Gaps = 55/411 (13%)
Query: 82 ITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIR--EGFTRYTPNAGTLEL 136
+ +A L + G +++L G P F+ P I I + +G Y+ + G
Sbjct: 21 VLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQG---YSDSKGLFSA 77
Query: 137 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---E 193
R AI +++ D I + NG + I+ A+ A+ + GDEV++PAP YP
Sbjct: 78 RKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAP---DYPLWTA 134
Query: 194 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253
++ PV + D + SK+T +++ +++ +P+NPTG+VY K LL+EI
Sbjct: 135 AVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV 194
Query: 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY 312
I +H L++ +DEIY+ I+Y A H S ASL P + +T NG SKA+ + G+R+G+
Sbjct: 195 EIARQH-NLIIFADEIYDKILYDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGW 251
Query: 313 --IAGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA--------GGEVVSK 358
++GPK ++ + + + A+ +Q A ALG GY GG
Sbjct: 252 MVLSGPKKHAKGYIEGLD-MLASMRLCANVPAQHAIQTALG-GYQSINELILPGGR---- 305
Query: 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLC 416
E+RD + + GV +P+GA Y F +D Y I + E
Sbjct: 306 ----LYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY---------PIHDDEQFV 352
Query: 417 RYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465
LL + +V LV G F + RI + L+ A+ RI + L R
Sbjct: 353 LDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR 403
|
Length = 404 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 107/377 (28%), Positives = 175/377 (46%), Gaps = 22/377 (5%)
Query: 88 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 146
G VI L G PD TP I EA A +Y+P G L+ A K
Sbjct: 26 KKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKR 85
Query: 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 205
E G++ P+ ++ + G K +++ + +PGD +++P P + Y +A A +
Sbjct: 86 EYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETM 145
Query: 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265
P NFL D + ++ EK++L+ L P+NPTG+V K +E KH + V+
Sbjct: 146 PLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVV 204
Query: 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325
D Y I + SF PG + + + SK F M GWR+ + G + + A N
Sbjct: 205 HDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINL 264
Query: 326 IQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384
+Q F S +I Q A + AL + V+++V + RR+ + + E+ G ++
Sbjct: 265 LQDHLFVSLFGAI-QDAAIEAL---LSDQSCVAELVARYESRRNAFISACREI-GWEVDA 319
Query: 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 442
P+G+F+ ++ +G+ SE LL+KA VA+ PG+ FG+ + +R+
Sbjct: 320 PKGSFFAWMPV-------PKGY----TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVG 368
Query: 443 YAASLTTLQAAVERIKK 459
L+ AVERI K
Sbjct: 369 LLTDEERLREAVERIGK 385
|
Length = 389 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 100/378 (26%), Positives = 173/378 (45%), Gaps = 29/378 (7%)
Query: 96 VIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 150
VI L+ G+P + T EA +A+R G F Y P+ G L R A+ L +
Sbjct: 33 VIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPG 92
Query: 151 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR---IADATPVILPT 207
T D +++++G Q+I + A+ +PG +++P P + Y A + +LP
Sbjct: 93 KLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLP- 151
Query: 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+++ +D LES EK+ +++ +PSNP GSV+ ++ L +IA + K + +++D
Sbjct: 152 --EKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKL-GIPIIAD 208
Query: 268 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-------GPKHFV 320
EIY H+++ A AS + L++ G SK + + GWRLG+I +
Sbjct: 209 EIYGHMVFGDAPFIPMASFASIVPV-LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVL 267
Query: 321 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380
+ Q G ++I Q A L E + + + + ++ G+
Sbjct: 268 QGLKNL-LQRILGPATIVQGALPDI--LENTPQEFFDGKISVLKSNAELCYEELKDIPGL 324
Query: 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 440
+P+GA YL + E E F +I++ C L + V +PG AFG +R
Sbjct: 325 VCPKPEGAMYLMV------KLELELFPEIKDDVDFCEKLAREESVICLPGSAFGLPNWVR 378
Query: 441 ISYAASLTTLQAAVERIK 458
I+ + L+ A RIK
Sbjct: 379 ITITVPESMLEEACSRIK 396
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 3e-42
Identities = 110/400 (27%), Positives = 171/400 (42%), Gaps = 29/400 (7%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPV----LIAEAGINAIR 121
L+P + A+ P + A +I L+ P + P +AEA A
Sbjct: 1 PLNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPPPPELLRALAEA---AAD 57
Query: 122 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181
Y P G ELR A G + +P+Q+ +++G Q+ A++ + GDEV
Sbjct: 58 PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEV 117
Query: 182 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241
I+P P++ ++ + PV LP L DP E+ +T ++R + L +P+NPTG
Sbjct: 118 ILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTG 177
Query: 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLT-VNGF 299
VYP LL E+ + +H L+L DE Y A H FA P W+ TL + F
Sbjct: 178 VVYPPELLHELYDLARRHGIALIL-DETYRDFDSGGGAPHDLFAD-PD-WDDTLVHLYSF 234
Query: 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 359
SK++A+TG R+G + +A K A I Q A A GL
Sbjct: 235 SKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIA--VAWGLPNLADWRAGNR 292
Query: 360 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 419
+ R RRD F L G ++ GA++ ++ F S + R L
Sbjct: 293 AEIAR-RRDAFRAVFARLPGWEL-LASGAYFAYV---------RHPFPDRP-SREVARRL 340
Query: 420 LDKAQVALVPGDAFGDDT--CIRISYA-ASLTTLQAAVER 456
+A + +PG FG +R+++A A + + VER
Sbjct: 341 AKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVER 380
|
Length = 386 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 6e-42
Identities = 95/354 (26%), Positives = 159/354 (44%), Gaps = 37/354 (10%)
Query: 90 AQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 148
Q G+ +I+L++ E + P + EA A+ + RY P+ ELR+A+
Sbjct: 17 RQYGLPGIIKLSSNENPYGPPPKVIEAIRAALDK-LNRY-PDPDYRELRAALAEYYGVV- 73
Query: 149 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208
P+ +LV NG+ + I V A PGD V+IP P + Y A++A A V +P +
Sbjct: 74 ----DPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK 129
Query: 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268
F LD + + + +K++L+ LC+P+NPTG++ P+ L + + + L+V+ DE
Sbjct: 130 ---EFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEG-GLVVI-DE 184
Query: 269 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328
Y I ++P + P T FSKAF + G R+GY +AA NK++
Sbjct: 185 AY--IEFSPESSLELLKYPPNLIVLRT---FSKAFGLAGLRVGYAIANPELIAALNKVRP 239
Query: 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388
F SS + A +AAL + + + V+ RE R+ L + L G+ P A
Sbjct: 240 PFN--VSSPALAAAIAALRD----ADYLEESVERIREERERLYAALKAL-GLFGVFPSQA 292
Query: 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
++ + + +L LL K + +RI+
Sbjct: 293 NFVLVRVPD------------AEAAALAEALLKKGILVRDCSSVGLLPGYLRIT 334
|
Length = 356 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 7e-41
Identities = 110/398 (27%), Positives = 186/398 (46%), Gaps = 28/398 (7%)
Query: 70 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRY 127
R+ A+ P A D+ A A + G+ +I L G PD P + EA I A+ + Y
Sbjct: 11 RLQAL-PPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGY 69
Query: 128 TPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
P GT R AI G+ PD + L G+K+ + LA +PGD V++P+P
Sbjct: 70 PPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSP 129
Query: 187 FWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
+YP R IA A + + ++L+D + ++ +++++L PSNPT +
Sbjct: 130 ---AYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTAT 186
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303
P+ +EI A+ ++++ D Y + + TS +PG + + + SK +
Sbjct: 187 APREFFEEIVAF-ARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY 245
Query: 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
M GWR+G++ G +H + +++ G S QKA AL L + ++ + +
Sbjct: 246 NMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERY 302
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
R RRDFL++ GEL G + + YL++ G S +L K
Sbjct: 303 RTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCPVGMG-----------STDFALNVLQKT 350
Query: 424 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
V + PG+AFG+ + +RIS A L A++R+K+
Sbjct: 351 GVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQ 388
|
Length = 394 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-40
Identities = 98/372 (26%), Positives = 174/372 (46%), Gaps = 39/372 (10%)
Query: 105 DFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI 157
DF TP A + A+++ G+T L +A+ + L + +G P+ I
Sbjct: 36 DFATP----PAVLEALKQRLEHPVFGYTLPPD-----SLYAAVINWLAQRHGWQIDPEWI 86
Query: 158 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FLLD 216
+ G S+ AV A+ +PG+ VI+ P + + + V+ P ++ + D
Sbjct: 87 VFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAVKSNGRELVLNPLKLDPGRYRFD 146
Query: 217 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 276
+ LE +TEK+RLL+LCSP NP G V+ + L +A + +H ++V+SDEI+ ++Y
Sbjct: 147 LEDLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRH-NVVVVSDEIHADLVYP 205
Query: 277 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 333
P H ASL P + ERT+T+ K F + G + + I P+ A Q
Sbjct: 206 PNKHIPLASLSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQH 265
Query: 334 ASSISQKAGVAALGLGYAGGEVVSKMVKA-FRERRDFLVKSFGE-LEGVKMSEPQGAFYL 391
+ A AA Y GE + A R RD + + + L +++ P+ +
Sbjct: 266 GNLFGYVAFEAA----YREGEPWLDALLAYLRGNRDLVEEFIAKRLPQIRVRPPEATYLA 321
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC--IRISYAASLTT 449
++D +A+ L + +++A + L PG +FGD +R+++ +T
Sbjct: 322 WLDCRALGLDDAD----------LRAFFIEQAGLGLNPGISFGDGGSGFMRLNFGCPRST 371
Query: 450 LQAAVERIKKGL 461
L+ A+ER+++ L
Sbjct: 372 LEQALERLRQAL 383
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 96/403 (23%), Positives = 166/403 (41%), Gaps = 29/403 (7%)
Query: 74 VKPS----KTV----AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-- 123
VKPS TV AI D VI+L+ G+P + + A+++
Sbjct: 3 VKPSDHSNNTVNPIRAIVDNMKVKPNPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKDSLD 62
Query: 124 ---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 180
+ Y P G L R AI +G D +++ +G +I + A+ + G
Sbjct: 63 SGKYNGYAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCIAALANAGQN 121
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240
+++P P + Y +A + +++ +D K LES + EK+ L++ +PSNP
Sbjct: 122 ILVPRPGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPC 181
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
GSV+ + L+EI + + L +++DEIY ++++ AT ASL L+ G +
Sbjct: 182 GSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATFEPVASLSSNVPI-LSCGGLA 239
Query: 301 KAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAALGLGYAGGEV 355
K + + GWRLG+I + SQ G +I Q A + L E
Sbjct: 240 KRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSI--LLRTPQEY 297
Query: 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 415
+ + + G++ P GA Y+ + G E E F + +N
Sbjct: 298 FDGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMV------GIEMEHFPEFKNDVEF 351
Query: 416 CRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 458
L+ + V +PG F R+ + ++ A RI+
Sbjct: 352 TERLIAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQ 394
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 101/404 (25%), Positives = 186/404 (46%), Gaps = 27/404 (6%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE--- 122
+L+ R+ A + S + AG +I L+ G PD + E ++ +
Sbjct: 4 TLATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKES 63
Query: 123 -GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDE 180
G+T +G E A+ + + D ++L+ G++ ++ + +PGD
Sbjct: 64 YGYTL----SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDI 119
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240
+++P P + +Y ++A AT +P + +FL D +++ ++ +K++++IL P NP
Sbjct: 120 ILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPV 179
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300
++ ++ E+ KH ++V+ D Y + SF S+PG E + +N S
Sbjct: 180 PAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLS 238
Query: 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
K++++ G R+GY+ G + V A + +S G QKA AAL G K
Sbjct: 239 KSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAAL---RNGAAFCEKNR 295
Query: 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420
++ERRD LV F G + +P G+ +++ + +G+ S S L+
Sbjct: 296 GIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIP-------KGW----TSLSFAYALM 343
Query: 421 DKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462
D+A V + PG AFG + +RI+ LQ AVE I+ +
Sbjct: 344 DRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRNSGI 387
|
Length = 399 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 2e-38
Identities = 100/390 (25%), Positives = 169/390 (43%), Gaps = 47/390 (12%)
Query: 95 SVIRLAAGEPDFDTPVL--IAEAGINAIR----EGFTRYTPNAGTLELRSAICHKLKEEN 148
SVI A G PD L + A +R +Y P AG ELR AI L
Sbjct: 90 SVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARR 149
Query: 149 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVIL 205
G+S P+QI++++GA+Q++ + + PGD V++ P +YP A + +
Sbjct: 150 GISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDP---TYPGALQALEALGARVIPV 206
Query: 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYP----KNLLDEIARIVAKH 259
P + +DP+ LE L + + +P+ NPTG K LL +A+
Sbjct: 207 PV---DEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLA-----LAEK 258
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
+L++ D+ Y + Y +L R + + FSK A G RLGY+ P
Sbjct: 259 YDVLIIEDDYYGELRYDGPPPPPLKAL-DAPGRVIYLGSFSKTLA-PGLRLGYVVAPPEL 316
Query: 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 377
+ +++ G SS+SQ A A L G+ + ++ + + RRD L+++ E
Sbjct: 317 IEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLP 375
Query: 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437
E + P+G +L+++ EG ++ L L+K V G AF D
Sbjct: 376 ELATWTRPEGGLFLWLEL-------PEGI----DARELLAAALEKGVVVTPLGSAFSADG 424
Query: 438 ----CIRISYA-ASLTTLQAAVERIKKGLL 462
+R+S++ S ++ ++R+ L
Sbjct: 425 DPRNGLRLSFSSPSEEEIEEGIKRLAALLR 454
|
Length = 459 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 5e-37
Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 36/356 (10%)
Query: 87 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146
A G VI+L + E F P EA + A + RY P+ EL+ A+
Sbjct: 12 PARELGGKEVIKLNSNENPFGPPPKAKEA-LRAEADKLHRY-PDPDPAELKQALADYY-- 67
Query: 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 206
P+QIL+ NG+ + I + A PGD V++P P + Y A+I A V +P
Sbjct: 68 ----GVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVP 123
Query: 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 266
E+ LD + + + +K +L+ LCSP+NPTG++ ++ ++ + + LV+
Sbjct: 124 LD--EDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPE--DALVVV 179
Query: 267 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326
DE Y ++ S L + + + SKAF + G R+GY + A NK+
Sbjct: 180 DEAY--GEFSG--EPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKV 235
Query: 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386
++ F S ++Q A +AAL + + K V+ R+ L +L G+++
Sbjct: 236 RAPF--NLSRLAQAAAIAAL----RDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSD 289
Query: 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
F + I F ++++L LL+K + G C+RI+
Sbjct: 290 ANF-VLIRFP-------------RDADALFEALLEKGIIVRDLNSYPGLPNCLRIT 331
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 8e-35
Identities = 113/385 (29%), Positives = 176/385 (45%), Gaps = 31/385 (8%)
Query: 88 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKE 146
A AG +I L G PD TP I + ++ T RY+ + G LR A
Sbjct: 24 AARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYAR 83
Query: 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATP 202
G+ PD Q++ + G+K+ A+ +PGD ++ P P SYP A +A
Sbjct: 84 RFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNP---SYPIHAFGFIMAGGVI 140
Query: 203 VILPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AK 258
+P E F L+ V S K LI+ PSNPT V LD +V AK
Sbjct: 141 RSVPAEPDEEFFPALERAVRHS--IPKPIALIVNYPSNPTAYVAD---LDFYKDVVAFAK 195
Query: 259 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318
+++LSD Y I + S +PG + T+ SK F+M GWR+G+ G +
Sbjct: 196 KHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNER 255
Query: 319 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378
+AA +++S GA + Q A AAL + +++M + +++RRD LV+SFG
Sbjct: 256 LIAALTRVKSYLDYGAFTPIQVAATAALN---GPQDCIAEMRELYKKRRDVLVESFGR-A 311
Query: 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D 436
G + P + + + + G +E S + L++KA VA+ PG FG+ D
Sbjct: 312 GWDIPPPAASMFAWAPIPEAF----RHLGSLEFS----KLLVEKADVAVAPGVGFGEHGD 363
Query: 437 TCIRISYAASLTTLQAAVERIKKGL 461
+RI+ + ++ A IK+ L
Sbjct: 364 GYVRIALVENEQRIRQAARNIKRFL 388
|
Length = 405 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 3e-34
Identities = 109/403 (27%), Positives = 189/403 (46%), Gaps = 59/403 (14%)
Query: 84 DQATALAQAGVSVIRLAAGEP---DFDTP--VL--IAEAGINAIREGFTRYTPNAGTLEL 136
D+A + AG +++L G P F TP V+ +A+ + EG Y+ + G
Sbjct: 136 DEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT--EG---YSDSKGLFSA 190
Query: 137 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 196
R AI + + + D I NG + I ++ A+ GDEV+IP+P + +
Sbjct: 191 RKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVN 250
Query: 197 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256
+A T V + D + SK+T +++ +++ +P+NPTG++YP+ +L +I I
Sbjct: 251 LAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIA 310
Query: 257 AKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--I 313
+H +L++ SDEIY+ ++ HTS ASL P ++ +T +G SK+ + G+R+G+ +
Sbjct: 311 REH-QLIIFSDEIYDRLVMDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMIL 367
Query: 314 AGPKHFVA-------------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360
+G K C+ + +Q SI Q ALG G+ V +V
Sbjct: 368 SGNKRIAKDYIEGLNMLANMRLCSNVPAQ------SIVQ----TALG-GHQ--SVKDYLV 414
Query: 361 KAFR--ERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLC 416
R E+R+ + + + G+ +P+ AFY+F ID + I + E
Sbjct: 415 PGGRVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF---------NIHDDEQFA 465
Query: 417 RYLLDKAQVALVPGDAFGDDTC--IRISYAASLTTLQAAVERI 457
LL +V +V G F D R+ Y L L+ A++R+
Sbjct: 466 LDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMDRL 508
|
Length = 517 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 25/399 (6%)
Query: 69 PRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R 126
R++ + P IT + A+ G +I + G PD TP I E + T
Sbjct: 4 TRIDRL-PPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHG 62
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
Y+ + G LR AI ++ + P+ + +V+ G+K+ + +LA GD V++P
Sbjct: 63 YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPN 122
Query: 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGS 242
P + + A IA A +P +F + LE + E K +++IL PSNPT
Sbjct: 123 PSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE---LERAIRESYPKPKMMILGFPSNPTAQ 179
Query: 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302
+++ + ++ +LV+ D Y I+Y S +PG + + SK+
Sbjct: 180 CVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKS 238
Query: 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362
+ M GWR+G++ G V+A +I+S G + Q A +AAL + V + +
Sbjct: 239 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALE---GDQQCVRDIAEQ 295
Query: 363 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422
++ RRD LVK E G + P+ + Y++ Y + G +E + + LL++
Sbjct: 296 YKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYAA----MGSLEFA----KKLLNE 346
Query: 423 AQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
A+V + PG FGD DT +R + + ++ A+ IK
Sbjct: 347 AKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA 385
|
Length = 395 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-33
Identities = 92/362 (25%), Positives = 169/362 (46%), Gaps = 28/362 (7%)
Query: 101 AGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILV 159
G+P TP I +A I+A+ E ++Y GT LR AI + G+ PD Q+L
Sbjct: 7 TGDPKEPTPPFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP 65
Query: 160 SNGAKQSILQAVLAVCSPGDE---VIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 216
S G+K++I L P ++ VI P + Y A A P + + + FLL
Sbjct: 66 SAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLR 125
Query: 217 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 276
+ +E + E+++++ + P NPTG+ P++ L E + +H +++ SDE Y I +
Sbjct: 126 LEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHG-IILCSDECYTEIYFG 184
Query: 277 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 336
H+ +L E L + SK MTG+R G++AG + ++ K+++ F +
Sbjct: 185 EPPHS---ALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPD 241
Query: 337 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396
Q A AA ++ V + K F+ +RD ++ F + G++ P FYL++
Sbjct: 242 FVQAAAKAA----WSDDNHVLERRKIFKRKRDLFIEFFNK-VGLEYLYPDATFYLWVKVP 296
Query: 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCIRISYAASLTTLQAAV 454
+ +++ LL+ + + PG+ F G++ +R++ +L + A+
Sbjct: 297 SGI-----------DAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVPTLEECEEAL 344
Query: 455 ER 456
Sbjct: 345 RL 346
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 105/353 (29%), Positives = 161/353 (45%), Gaps = 33/353 (9%)
Query: 94 VSVIRLAAGEPDF--DTPV---LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 148
+ +I + GEPD D V L EA R Y N G E + A +++
Sbjct: 44 MELIDMGVGEPDEMADESVVEVLCEEAKKPENRG----YADN-GIQEFKEAAARYMEKVF 98
Query: 149 GL-SYTPD-QILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA---DAT 201
G+ P +++ S G+K ++ A+L C +PGD ++ P YP
Sbjct: 99 GVKDIDPVTEVIHSIGSKPAL--AMLPSCFINPGDVTLMTVP---GYPVTGTHTKYYGGE 153
Query: 202 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261
LP NFL D + + EK++LL L P+NPTG+V K +E+ AK
Sbjct: 154 VYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDF-AKENN 212
Query: 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 321
++V+ D Y + + SF S+PG E + ++ SKA+ MTGWRL ++ G + V
Sbjct: 213 IIVVQDAAYAALTFD-GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVK 271
Query: 322 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381
A ++ SG QKAG+ AL E+ K+ + + R D LVK E+ G K
Sbjct: 272 AFATVKDNNDSGQFIAIQKAGIYAL----DHPEITEKIREKYSRRLDKLVKILNEV-GFK 326
Query: 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 434
P G FYL++ + K EN+E +YL+ + ++ VP D G
Sbjct: 327 AEMPGGTFYLYVKAPK----GTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG 375
|
Length = 410 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 6e-32
Identities = 106/414 (25%), Positives = 187/414 (45%), Gaps = 34/414 (8%)
Query: 64 DVSLSPRV-NAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD----TPVLIAEAGIN 118
DVS+S P +T +TD A + + S+I+L+ G+P D TP + +A +
Sbjct: 5 DVSMSKHAGRVFNPLRT--VTDNAKP-SPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVE 61
Query: 119 AIREG-FTRYTPNAGTLELRSAI--------CHKLKEENGLSYTPDQILVSNGAKQSILQ 169
A+ Y P G+ E R A+ HK ++ + D +++ +G +IL
Sbjct: 62 AVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK--DNVVLCSGVSHAILM 119
Query: 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 229
A+ A+C GD +++PAP + Y + + R +++ D + + ++++
Sbjct: 120 ALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTK 179
Query: 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289
LI+ +PSNP GS + + +++I R + + RL ++SDEIY +++ AT TS A
Sbjct: 180 ALIMTNPSNPCGSNFSRKHVEDIIR-LCEELRLPLISDEIYAGMVFNGATFTSVADFDTT 238
Query: 290 WERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAA----CNKIQSQFTSGASSISQKAGVA 344
R + + G +K + GWRLG+ + H K G S+ Q A
Sbjct: 239 VPR-VILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGE 297
Query: 345 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 404
A L E + ++V E L GE G+ + P+G+ +L
Sbjct: 298 A--LLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK----- 350
Query: 405 GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 458
F I++ LL++ V ++PG+ F R++ + + L+ AVERIK
Sbjct: 351 -FRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIK 403
|
Length = 412 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 106/395 (26%), Positives = 188/395 (47%), Gaps = 30/395 (7%)
Query: 81 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSA 139
+ + A +AG +I + G PD TP I + + ++ T Y+ + G +LR A
Sbjct: 20 EVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLA 79
Query: 140 ICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-- 196
IC+ K + + P+ +++ + G+K+ + V A+ +PGD I+P P +YP ++
Sbjct: 80 ICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDP---AYPIHSQAF 136
Query: 197 -IADATPVILPTRISENFLLDP----KVLESKLTE---KSRLLILCSPSNPTGSVYPKNL 248
+A +P +E+F LD + LE L E K + +++ P NPT + K+
Sbjct: 137 ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSF 196
Query: 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308
+ + + AK R ++SD Y I + S + G + + SK++ M GW
Sbjct: 197 YERLVAL-AKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW 255
Query: 309 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 368
R+G++ G K V A KI+S G + Q A AL V ++ + +R+RRD
Sbjct: 256 RVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALD---GDQSCVEEIRETYRKRRD 312
Query: 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 428
L++SF G ++ +P+ + +++ G +E S + LL +A+VA+
Sbjct: 313 VLIESFAN-AGWELQKPRASMFVWAKIPEPARH----LGSLEFS----KQLLTEAKVAVS 363
Query: 429 PGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461
PG FG+ D +RI+ + ++ A IKK L
Sbjct: 364 PGIGFGEYGDEYVRIALIENENRIRQAARNIKKFL 398
|
Length = 403 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 46/306 (15%)
Query: 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 156
I+L++ E F P+ A I G RY P+ G +ELR+A+ L P+
Sbjct: 25 IKLSSNETPFG-PLPSVRAAIARAAAGVNRY-PDMGAVELRAALAEHL------GVPPEH 76
Query: 157 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADATPVILPTRISENF 213
+ V G+ Q V A PGDEVI W S YP + ++A ATPV +P
Sbjct: 77 VAVGCGSVALCQQLVQATAGPGDEVIFA---WRSFEAYPILVQVAGATPVQVPLTPDHTH 133
Query: 214 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEH 272
LD + + +T+++RL+ +C+P+NPTG+V E+AR + P +LV+ DE Y
Sbjct: 134 DLD--AMAAAITDRTRLIFVCNPNNPTGTVVTP---AELARFLDAVPADVLVVLDEAYVE 188
Query: 273 IIYAPAT---------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 323
+ H + L RT FSKA+ + G R+GY G +AA
Sbjct: 189 YVRDDDVPDGLELVRDHPNVVVL-----RT-----FSKAYGLAGLRVGYAVGHPEVIAAL 238
Query: 324 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383
K+ F +S++Q A +A+L A E++ + V A RD + + G +
Sbjct: 239 RKVAVPF--SVNSLAQAAAIASLA---AEDELLER-VDAVVAERDRVRAALRA-AGWTVP 291
Query: 384 EPQGAF 389
Q F
Sbjct: 292 PSQANF 297
|
Length = 352 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-27
Identities = 79/311 (25%), Positives = 140/311 (45%), Gaps = 33/311 (10%)
Query: 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 154
S+I+L + E EA + RY P ELR A+
Sbjct: 35 SIIKLGSNENPLGPSPKAVEAIEKEL-SKIHRY-PEPDAPELREAL------SKYTGVPV 86
Query: 155 DQILVS-NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 213
+ I+V +G + I + PGDEVIIP P + Y A+ A PV + E+F
Sbjct: 87 ENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYA--KREEDF 144
Query: 214 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273
LD + + +TEK++++ LC+P+NPTG++ P+ ++I +I+ L+ + DE Y +
Sbjct: 145 SLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE---EDIRKILESTDALVFV-DEAY--V 198
Query: 274 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333
+A +T A ++ + FSK F + G R+GY P+ + + ++ F+
Sbjct: 199 EFAEYDYTPLA---LEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPFS-- 253
Query: 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLF 392
+ +SQ A +AAL + E + K ++ + R++L + P A ++
Sbjct: 254 LTRLSQAAAIAAL----SDKEYIEKSIEHGIKSREYL------YNELPFKVYPSEANFVL 303
Query: 393 IDFSTYYGSEA 403
+D + E
Sbjct: 304 VDVTPMTAKEF 314
|
Length = 361 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 99/395 (25%), Positives = 166/395 (42%), Gaps = 44/395 (11%)
Query: 86 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 145
A A I L+ GEP TP + EA + G + Y G ELR AI L+
Sbjct: 20 AGVTPPASKPPIALSIGEPKHPTPAFVLEALRENL-HGLSTYPTTKGLPELRQAIARWLE 78
Query: 146 EENGLSYTPD---QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADA 200
L D +L NG ++++ AV +PG V++P PF+ Y A +A A
Sbjct: 79 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGA 138
Query: 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260
P L FL D + + + +LL +CSP NPTG+V LD + +++
Sbjct: 139 EPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLS---LDTLKKLIELAD 195
Query: 261 R--LLVLSDEIYEHIIY----APATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGY 312
+ ++ SDE Y + + PA A+ G + R L + SK + G R G+
Sbjct: 196 QYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGF 255
Query: 313 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372
+AG + A + ++ +Q A +AA + + V + +RE+ +++
Sbjct: 256 VAGDAEILKAFLRYRTYHGCAMPIPTQLASIAA----WNDEQHVRENRALYREKFAAVLE 311
Query: 373 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432
G++ +++ P FYL+ + G + E+ R L ++ V ++PG
Sbjct: 312 ILGQVLDLEL--PDAGFYLWP--------KVPG-----DDEAFARALYEEENVTVLPGRF 356
Query: 433 FGDDT--------CIRISYAASLTTLQAAVERIKK 459
+ +RI+ A L A ERI+
Sbjct: 357 LAREAEGVNPGEGRVRIALVAPLEECVEAAERIRS 391
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 98/362 (27%), Positives = 159/362 (43%), Gaps = 35/362 (9%)
Query: 112 IAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170
+ EA I I EG + +Y P G ELR I LK+ L D+ L++ GA +S+
Sbjct: 46 VREAMIRCIEEGEYCKYPPPEGFPELRELI---LKD---LGLDDDEALITAGATESLYLV 99
Query: 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSR 229
+ A SPGD + P P ++ A A + +P E N+ L P++++ + E +R
Sbjct: 100 MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTR 159
Query: 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289
L+ L P NP GS Y + + E A I A+ +L D Y +A + P
Sbjct: 160 LIYLIDPLNPLGSSYTEEEIKEFAEI-ARDNDAFLLHDCTYRD--FAREHTLAAEYAP-- 214
Query: 290 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 349
E T+T FSK F M G R+G + + I G + I+Q+A +A L
Sbjct: 215 -EHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGL--- 269
Query: 350 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGK 408
E + ++ + + + + ++ E+EGV + P + ID S G
Sbjct: 270 KVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA------GI-- 321
Query: 409 IENSESLCRYLLDKAQVALVPG----DAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
+ E L YLL++ ++ + G FGD IR+S++ ++ E + TL
Sbjct: 322 --DPEDLVEYLLER-KIFVRQGTYTSKRFGDRY-IRVSFSIPREQVEVFCEEFPDVVETL 377
Query: 465 RP 466
R
Sbjct: 378 RT 379
|
Length = 380 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 22/332 (6%)
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
R P+ G LR+AI + + + ++ ++G+ ++I + A+ PGDEV++
Sbjct: 46 RDGPSLGGEGLRAAIADRWRGGD-----AHVVMTTHGSSEAIYLVLTALLRPGDEVVVVD 100
Query: 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245
P + S +A P F D L + LT ++R +++ P NPTG+
Sbjct: 101 PAYHSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVT 160
Query: 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
LDE+ A+ +L+ D + +++ +++R ++ SKAF +
Sbjct: 161 PRELDELLERAARSGAVLLW-DNAFADLVH---DAPPLPDPSALYDRVISFGTLSKAFGL 216
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
G R+G+ GP +A +++ T S + + +A + + +A + ++ +A
Sbjct: 217 PGLRVGWCVGPADLLAELVRLRDYTTLSLSPLVEL--LAEVAVEHADALIGPRLAEARAN 274
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RR L + + V+ + P+G F F + LCR LL + V
Sbjct: 275 RRRLLDWAAAHPDVVRCTPPEGGVAAFPRFP-----------GHADVTDLCRRLLARHGV 323
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457
LVPG FG +R+ + S L+A + R+
Sbjct: 324 LLVPGSCFGAADRMRLGFGGSSAELRAGLARL 355
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY 191
G+ E + A+ L + + P+ IL +NGA + + A+ PGD VI P +Y
Sbjct: 63 GSPEFKEAVA-SLYQ----NVKPENILQTNGATGANFLVLYALVEPGDHVISVYP---TY 114
Query: 192 PEMARIAD---ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248
++ I + A + +L D L + ++L+ + + +NPTG++ +
Sbjct: 115 QQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAY 174
Query: 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308
L+EI I A+ VLSDE+Y + S S+ ++E+ ++ N SK +++ G
Sbjct: 175 LEEIVEI-ARSVDAYVLSDEVYRPL----DEDGSTPSIADLYEKGISTNSMSKTYSLPGI 229
Query: 309 RLGYIAGPKHFVAACNK 325
R+G+IA + + K
Sbjct: 230 RVGWIAANEEVIDILRK 246
|
Length = 373 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-24
Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 44/352 (12%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSY 152
+I+LA+ E P+ + I AIR RY P+ EL++A+ K G+
Sbjct: 34 IIKLASNE----NPLGPSPKAIEAIRAAADELHRY-PDGSGFELKAALAEKF----GVD- 83
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212
P++I++ NG+ + + A PGDEVI + YP A+ A PV +P +++
Sbjct: 84 -PERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVP---AKD 139
Query: 213 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 270
+ D + + +T ++RL+ + +P+NPTG+ P +E+ R +A P L+VL DE Y
Sbjct: 140 YGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA---EEVERFLAGVPPDVLVVL-DEAY 195
Query: 271 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330
+ L + + FSKA+ + G R+GY P + A N+++ F
Sbjct: 196 AEYVRRKDYEDGLE-LVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPF 254
Query: 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 390
+S++ A VAAL V K E +L + EL G++ G F
Sbjct: 255 N--VNSLALAAAVAAL----DDDAFVEKSRALNAEGMAWLTEFLAEL-GLEYIPSVGNFI 307
Query: 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
L F +++ + LL + V + P +G +RI+
Sbjct: 308 LVD------------FDDGKDAAEAYQALLKRG-VIVRPVAGYGLPNALRIT 346
|
Length = 367 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-24
Identities = 83/379 (21%), Positives = 155/379 (40%), Gaps = 31/379 (8%)
Query: 97 IRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS 151
I G+P F T + +A + A+R F Y P G L R AI L +
Sbjct: 35 ISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ 94
Query: 152 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV------IL 205
+PD + ++ G K + + + P +++P P +P++ A + +L
Sbjct: 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRP---GFPDVETYAIFHHLEIRHFDLL 151
Query: 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265
P + E +D +E+ E + +++ +P NP GSVY L++IA A+ +LV+
Sbjct: 152 PEKGWE---VDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAE-TARKLGILVI 207
Query: 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AGPKHFVAAC 323
+DE+Y HI++ L +T+ SK + + GW LG++ P + C
Sbjct: 208 ADEVYGHIVFGSKPFVPM-GLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQIC 266
Query: 324 ---NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380
+ I+ + L + SK + R F E+ +
Sbjct: 267 EIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI 326
Query: 381 KMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439
+ +GAF+ + + + IE+ C L + + ++PG G +
Sbjct: 327 MCPQKAEGAFFALVKLNLLLLED------IEDDMEFCLKLAKEESLIILPGVTVGLKNWL 380
Query: 440 RISYAASLTTLQAAVERIK 458
RI++A ++L+ + R+K
Sbjct: 381 RITFAVEQSSLEDGLGRLK 399
|
Length = 409 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 8e-23
Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 47/388 (12%)
Query: 96 VIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 150
V+ L G+P F T +A A+R G + Y+ G L R AI L +
Sbjct: 54 VLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPY 113
Query: 151 SYTPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIADAT 201
+ D I ++ G Q+I + +VLA PG +++P P + Y A R D
Sbjct: 114 ELSTDDIYLTAGCAQAIEIIMSVLA--QPGANILLPRPGYPLYEARAVFSGLEVRHFD-- 169
Query: 202 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261
+LP R E +D + +E+ E + +++ +P+NP GSVY L +IA A+
Sbjct: 170 --LLPERGWE---VDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAE-TARKLG 223
Query: 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERT---LTVNGFSKAFAMTGWRLGYIA--GP 316
+LV++DE+Y+H+ + F + G++ LT+ SK + + GWRLG+IA P
Sbjct: 224 ILVIADEVYDHLTFG---SKPFVPM-GVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDP 279
Query: 317 KHFVAACNKIQS-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 371
+ + S ++ ++ Q A + + + E +K + +E D
Sbjct: 280 NGILKETKVVDSIRNYLNISTDPATFVQGA-IPQI-IANTKEEFFTKTLGLLKETADICY 337
Query: 372 KSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430
+ E++ + +P+G+ ++ + I++ C L + V ++PG
Sbjct: 338 EKIKEIKCITCPHKPEGSMFVMVKLDLSC------LSGIKDDMDFCCKLAKEESVVVLPG 391
Query: 431 DAFGDDTCIRISYAASLTTLQAAVERIK 458
A G +RI++A +L+ +ER+K
Sbjct: 392 SALGMKNWLRITFAIDPPSLEDGLERLK 419
|
Length = 430 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 106/402 (26%), Positives = 161/402 (40%), Gaps = 54/402 (13%)
Query: 88 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLELRSAICH 142
+IRL G+ P + EA NA+ E F Y P G LR AI
Sbjct: 27 RKKNPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASPETFRGYGPEQGYPFLREAI-- 84
Query: 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 202
+ + P++I +S+GAK + + + ++ P + V + P + +Y + +A
Sbjct: 85 -AENDYRGRIDPEEIFISDGAKCDVFR-LQSLFGPDNTVAVQDPVYPAYLDSNVMAGRAG 142
Query: 203 VI-----------LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251
V+ LP NF+ P++ E + ++ LCSP+NPTG+V K L E
Sbjct: 143 VLDDDGRYSKITYLPCTAENNFI--PELPEEPHID---IIYLCSPNNPTGTVLTKEQLKE 197
Query: 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311
+ +H L+L D Y I P+ S +PG + FSK TG RLG
Sbjct: 198 LVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVRLG 256
Query: 312 YIAGPK-------HFVAAC-NKIQSQFTSGASSISQKAGVAAL-GLG-YAGGEVVSKMVK 361
+ PK H V + Q +GAS Q+A A G G E +S
Sbjct: 257 WTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAGYAGEGLQPILEAISY--- 313
Query: 362 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 421
+ E L K+ E G K+ + A YL++ + +S +LL
Sbjct: 314 -YMENARILRKAL-EAAGFKVYGGEHAPYLWVKTP-----------EGISSWDFFDFLLY 360
Query: 422 KAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461
+ V PG FG + +R S + A ERIK+ L
Sbjct: 361 EYHVVGTPGSGFGPSGEGFVRFSAFGKRENIIEACERIKEAL 402
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 3e-22
Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 21/252 (8%)
Query: 143 KLKEE--NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 200
KL+EE S P I V NG+ + I +LA + GD VI P P + Y ++IA A
Sbjct: 63 KLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGA 122
Query: 201 TPVILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
+ P ++ E++ D ++ + +L+ LC+P+NPTGSV + ++I +I+ K
Sbjct: 123 VEI--PVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER---EDIIKIIEKS 177
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
++V+ + +E Y + + +E + + SKAF + G R+GY ++
Sbjct: 178 RGIVVVDEAYFE--FYG----NTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENI 231
Query: 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379
+ N ++S + +S+SQ + L G V+ + V R+ L+K ++ G
Sbjct: 232 LKYLNLVKSPYN--INSLSQVIALKVLRTG-----VLKERVNYILNERERLIKELSKIPG 284
Query: 380 VKMSEPQGAFYL 391
+K+ + F L
Sbjct: 285 IKVYPSKTNFIL 296
|
Length = 351 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 93/391 (23%), Positives = 167/391 (42%), Gaps = 41/391 (10%)
Query: 91 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIR----------EGFTR-----YTPNAGTLE 135
Q+ + L GEP PV + ++A G R YT G +
Sbjct: 23 QSAAGLEALLRGEPLPGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDAD 82
Query: 136 LRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 194
+R + +L G D+++++ G + ++ AV A + GD+V I P + + ++
Sbjct: 83 IRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 142
Query: 195 ARIADATPVILPTRI-----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 249
+ ++P ++ + LD LE R+ + +P+NP G VY +
Sbjct: 143 VEFFEG--EMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEI 200
Query: 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309
+IA + ++ V+ D++Y ++Y ++T +LP E +T+ G SK +++G+R
Sbjct: 201 AQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR 259
Query: 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRD 368
LG G + K+Q+ + A+ SQ A L ++ + + + + RD
Sbjct: 260 LGVAFGSPAIIDRMEKLQAIVSLRAAGYSQ----AVLRTWFSEPDGWMKDRIARHQAIRD 315
Query: 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 428
L++ +EGV + PQ YLF S + F KI L +A V +
Sbjct: 316 DLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAVSLHD-FVKI---------LRLQAGVIVT 365
Query: 429 PGDAFGDDT--CIRISYAASLTTLQAAVERI 457
PG F T IR++++ AA ERI
Sbjct: 366 PGTEFSPHTADSIRLNFSQDHAAAVAAAERI 396
|
Length = 405 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 9e-21
Identities = 95/390 (24%), Positives = 172/390 (44%), Gaps = 40/390 (10%)
Query: 84 DQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR-YTPNAGTLELRSAIC 141
D+A A A AG +I L+ G D P EA ++ + T Y GTL+ R A
Sbjct: 19 DRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAA 78
Query: 142 HKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 200
++ GL+ P+ ++L G+++ LAV +PGD ++ P + S+ +A
Sbjct: 79 QWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGG 138
Query: 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260
+P R +FL + +++ ++RL++L P NPT ++ P + E +H
Sbjct: 139 QIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHD 198
Query: 261 RLLV----LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIA 314
+LV D +++ + P+ L E+++++ F SK++ M G+R+G+
Sbjct: 199 LVLVHDFPYVDLVFDGEVEPPSI------LQADPEKSVSIEFFTLSKSYNMGGFRIGFAI 252
Query: 315 GPKHFVAACNKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDF 369
G + A ++++ +Q G +AAL V + V+ FR+RRD
Sbjct: 253 GNAQLIQALRQVKA-----VVDFNQYRGILNGAIAALT---GPQATVQQTVQIFRQRRDA 304
Query: 370 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429
+ + ++ G + P+ Y++ + NS C L+ + VA P
Sbjct: 305 FINALHQI-GWPVPLPEATMYVWAKLPEPWQG---------NSVEFCTQLVAQTGVAASP 354
Query: 430 GDAFGD--DTCIRISYAASLTTLQAAVERI 457
G FG + +R + L+ AVERI
Sbjct: 355 GSGFGKSGEGYVRFALVHDPDILEEAVERI 384
|
Length = 388 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-20
Identities = 106/397 (26%), Positives = 160/397 (40%), Gaps = 62/397 (15%)
Query: 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGL- 150
A + I L+ GEP TP I +A + +G Y AG LR AI L+ GL
Sbjct: 27 ADLPPISLSIGEPKHPTPAFIKDALAANL-DGLASYPTTAGLPALREAIAAWLERRYGLP 85
Query: 151 SYTPD-QILVSNGAKQ---SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 206
+ P Q+L NG+++ + Q V+ PG V+ P PF+ Y A +A A P L
Sbjct: 86 ALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLN 145
Query: 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLV 264
+ NF D + +++ +++LL +CSP NPTG+V P LD+ ++ A R ++
Sbjct: 146 CDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLP---LDDWKKLFALSDRYGFVI 202
Query: 265 LSDEIYEHIIYAPATHTSFASLP-------GMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317
SDE Y I Y L ++R + + SK + G R G
Sbjct: 203 ASDECYSEI-YFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSG------ 255
Query: 318 HFVAACNKIQSQFT-------SGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDF 369
FVA + +F Q A +AA E V + +RE+ D
Sbjct: 256 -FVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWN-----DEAHVRENRALYREKFDA 309
Query: 370 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429
+ + V++ P FYL+ G + E R L V ++P
Sbjct: 310 VTPILAPVLDVQL--PDAGFYLWAKVP---GDDTE----------FARRLYADYNVTVLP 354
Query: 430 G-----DAFGDDTC---IRISYAASLTTLQAAVERIK 458
G +A G + +RI+ A L A ERI
Sbjct: 355 GSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIV 391
|
Length = 396 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 3e-20
Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 50/354 (14%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
+++LA+ E + + EA + E P+ ELR+ + L + +
Sbjct: 31 IVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHLGVD------EE 82
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
Q+L G + I A+ +PG ++ P + Y A I A +P + +
Sbjct: 83 QLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGH 139
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIY-EHI 273
D + + + E+++++ +C+P+NPTG+ V + LL + + +LV+ DE Y E++
Sbjct: 140 DLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV---PSHVLVVLDEAYYEYV 196
Query: 274 IYAPATHT-----SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328
T + +L + RT FSKA+ + R+GY + + N +
Sbjct: 197 TAEDYPDTLPLLEKYENL--IVLRT-----FSKAYGLAALRVGYGIASEELIEKLNIARP 249
Query: 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388
F + + I+Q A +AAL + + V+ E + E G+ Q
Sbjct: 250 PFNT--TRIAQYAAIAALE----DQAFLKECVEKNAEGLEQYYAFCKEY-GLFYYPSQTN 302
Query: 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
F +F+D ++ L LL K + G A G T +RI+
Sbjct: 303 F-IFVDTG-------------RDANELFEALLKKGYIVR-SGAALGFPTGVRIT 341
|
Length = 359 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 5e-20
Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 23/259 (8%)
Query: 115 AGINAIREGFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172
A + AIRE R P A +L +A+ + +P+Q+ ++NG ++
Sbjct: 47 AAVEAIREAAERVHSYPKASHADLTAALADRW------DVSPEQVWLANGGDGALDYLAR 100
Query: 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP-KVLESKLTEKSRLL 231
A+ PGD V++P P + Y AR P +++F VL++ E R++
Sbjct: 101 AMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYDGE--RIV 158
Query: 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291
L SP NPTGS P + ++ +A + LV+ DE Y P S +L +
Sbjct: 159 YLTSPHNPTGSEIPLDEVEALAERTDEET--LVVVDEAYGEFAERP----SAVALVEERD 212
Query: 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351
+ FSKA+ + G RLGY P+ + A ++ + F AS ++ +AG+AAL
Sbjct: 213 DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTPFA--ASELACRAGLAALD---- 266
Query: 352 GGEVVSKMVKAFRERRDFL 370
E V + V+ R R+++
Sbjct: 267 DDEHVERTVETARWAREYI 285
|
Length = 357 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 91.3 bits (226), Expect = 9e-20
Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 23/377 (6%)
Query: 95 SVIRLAAGEPD----FDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENG 149
+++ L G+P F T + +A ++ +R G Y P AG L R A+ + +
Sbjct: 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLP 126
Query: 150 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 209
TP+ I ++ G Q I ++ P +++P P + Y A +
Sbjct: 127 HKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLP 186
Query: 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 269
+ + +D + +E+ E + +++ +P+NP G+VY + L ++A A+ ++V+SDE+
Sbjct: 187 EKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE-TARKLGIMVISDEV 245
Query: 270 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA--GPKHFVAACNKIQ 327
Y+ I+ S + LT+ G SK + + GW++G+IA P+ +Q
Sbjct: 246 YDRTIFGDNPFVSMGKFASIVP-VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQ 304
Query: 328 S-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382
S T ++I Q A A L A +K K + D + ++ V
Sbjct: 305 SIKQNLDVTPDPATIIQAALPAI--LEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVC 362
Query: 383 -SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441
+P+ YL E I++ C L + + +PGDA G +RI
Sbjct: 363 PKKPESCTYLLTKL------ELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRI 416
Query: 442 SYAASLTTLQAAVERIK 458
+ L+ A+ER+K
Sbjct: 417 TIGVEAHMLEDALERLK 433
|
Length = 462 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 102/408 (25%), Positives = 151/408 (37%), Gaps = 78/408 (19%)
Query: 95 SVIRLAAGEPDFDTPVLIAEAGINAI---------REGFTRYTPNAGTLELRSAICHKLK 145
+IRL G D + A I A+ E F Y P G LR I
Sbjct: 35 KIIRLGIG----DVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDY 90
Query: 146 EENGLSYTPDQILVSNGAK------QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 199
+ G + D+I +S+GAK I P + + + P + Y + +A
Sbjct: 91 QARGCDISADEIFISDGAKCDTGNILDIF-------GPDNTIAVTDPVYPVYVDTNVMAG 143
Query: 200 ATP-----------VILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247
T V LP NF+ + P+ EK ++ LC P+NPTG+V K
Sbjct: 144 RTGEANEDGRYSGIVYLPCTAENNFVPELPE-------EKVDIIYLCFPNNPTGTVLTK- 195
Query: 248 LLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
+++ V AK L+L D YE I P+ S + G E + FSK
Sbjct: 196 --EQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253
Query: 306 TGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVAALGLGYAGG 353
TG R Y PK N+ QS +G S I Q+A A G
Sbjct: 254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSP--EGK 311
Query: 354 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413
+ +++ + E + + G ++ A Y+++ S + F K
Sbjct: 312 AQIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGMSSW-DFFDK----- 364
Query: 414 SLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
LL +A V PG FG + R+S S + A+ERIKK
Sbjct: 365 -----LLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERIKK 407
|
Length = 409 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 47/334 (14%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFT 125
+ V + KP + V G I L E FD P + E ++ F
Sbjct: 2 IRELVKSFKPYRVVE-----------GNYRIWLDKNENPFDLPEELKEEIFEELKRVPFN 50
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
RY P+ + LR AI + I V NG+ + I + L G ++I
Sbjct: 51 RY-PHITSDPLREAIA------EFYGLDAENIAVGNGSDELI--SYLVKLFEGKHIVITP 101
Query: 186 PFWVSYPEMARIADATPVI-LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P + Y A++ + PVI +P + E+F +D + + K + + + +CSP+NPTG++
Sbjct: 102 PTFGMYSFYAKL-NGIPVIDVPLK--EDFTIDGERIAEK-AKNASAVFICSPNNPTGNLQ 157
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
P+ +EI +++ V+ DE Y A + S L + + + FSKAF
Sbjct: 158 PE---EEILKVL--ETGKPVVLDEAY-----AEFSGKSLIGLIDEYPNLILLRTFSKAFG 207
Query: 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364
+ G R GY + + A +I+ F+ ++ K + L L + ++ + +
Sbjct: 208 LAGIRAGYAIANEEIIDALYRIKPPFSLN--ILTMK--IVRLALDHYD--LIEERIDYII 261
Query: 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398
+ R+ + + GE + P A +L + Y
Sbjct: 262 KERERVRRELGE-----YAYPSDANFLLLKLDAY 290
|
Length = 337 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 3e-19
Identities = 95/390 (24%), Positives = 165/390 (42%), Gaps = 41/390 (10%)
Query: 91 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLK 145
+ G VI L G+P F T + EA ++A++ F Y P G + R AI L
Sbjct: 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLS 87
Query: 146 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIA 198
+ + D + +++G Q+I A+ + PG +++P P + Y A R
Sbjct: 88 RDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYV 147
Query: 199 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 258
D +LP + E +D +E+ + + L++ +P NP G+VY L +IA A+
Sbjct: 148 D----LLPEKGWE---VDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAE-TAE 199
Query: 259 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA---- 314
++LV++DE+Y H+ + G LT+ SK + + GWRLG+
Sbjct: 200 KLKILVIADEVYGHLAFGSNPFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGWFVTTDP 258
Query: 315 -----GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369
PK V K A+ I +A V + L K + ++ D
Sbjct: 259 SGSFRDPK-IVERIKKYFDILGGPATFI--QAAVPTI-LEQTDESFFKKTINILKQSSDI 314
Query: 370 LVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 428
E+ + +P+G+ + + + I + C L + V ++
Sbjct: 315 CCDRIKEIPCITCPHKPEGSMAVMVKLNLSL------LEDISDDIDFCFKLAREESVIIL 368
Query: 429 PGDAFGDDTCIRISYAASLTTLQAAVERIK 458
PG A G +RI++AA ++L+ A+ RIK
Sbjct: 369 PGTAVGLKNWLRITFAADPSSLEEALGRIK 398
|
Length = 409 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 1e-18
Identities = 79/282 (28%), Positives = 125/282 (44%), Gaps = 23/282 (8%)
Query: 119 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 178
A + TR P+ LRSA L G P+Q+L+ G+ ++I V A+C PG
Sbjct: 47 ADPDASTRRYPDPQPPGLRSA----LAALYGC--APEQLLIGRGSDEAIDLLVRALCVPG 100
Query: 179 -DEVIIPAPFWVSYPEMARIADATPVILP-TRISENFLLD-PKVLESKLTEKSRLLILCS 235
D V++ P + Y AR+ +A V +P ++ F D P ++ + L ++L+ LCS
Sbjct: 101 RDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCS 160
Query: 236 PSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RT 293
PSNP GS LD+I R + A + LV+ DE Y P+ A + RT
Sbjct: 161 PSNPAGSAIA---LDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRT 217
Query: 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 353
L SKA A+ R+G + +A + Q+ + + +A L
Sbjct: 218 L-----SKAHALAAARIGSLIANAELIAVLRRCQAPYPVPTPCAA----LAEQALSAPAL 268
Query: 354 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395
V ++ V R R+ L + +L GV+ P +L + F
Sbjct: 269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRF 310
|
Length = 364 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 64/273 (23%), Positives = 102/273 (37%), Gaps = 34/273 (12%)
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 183
+ RY P+ ELR+A +L NGA Q + + + +PG V++
Sbjct: 41 WARY-PDPEYDELRAAAAAYYG------LPAASVLPVNGA-QEAIYLLPRLLAPGR-VLV 91
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
AP + Y R A V LP D L + L E + LL++C+P+NPTG +
Sbjct: 92 LAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALEE-ADLLVVCNPNNPTGRL 141
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKA 302
P L +A + LV+ DE + T S A + + + +K
Sbjct: 142 IPPETLLALAARLRARGGWLVV-DE-----AFIDFTPDASLAPQAARFPGLVVLRSLTKF 195
Query: 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA-SSISQKAGVAALGLGYAGGEVVSKMVK 361
F + G RLG++ +A ++ + + AG AAL A +
Sbjct: 196 FGLAGLRLGFVVAHPALIAR---LREALGPWTVNGPALAAGRAAL----ADTAWQAATRA 248
Query: 362 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394
R L L G+++ F L
Sbjct: 249 RLAAERARLAALLARLGGLRVVGGTALFLLVRT 281
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 1e-17
Identities = 86/311 (27%), Positives = 140/311 (45%), Gaps = 30/311 (9%)
Query: 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 154
+++L A E + P + EA N F P+ + LR+A+ E++GL
Sbjct: 53 DIVKLDANENPYGPPPEVLEALGNM---KFPYVYPDPESRRLRAALA----EDSGLE--S 103
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
+ ILV GA + I + V PGD++I P + Y A + A + +P + +F
Sbjct: 104 ENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVP--RTPDFS 161
Query: 215 LD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273
LD P+++E+ T K +LL L SP+NP GS+ + L +I + P L+VL DE Y
Sbjct: 162 LDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILEL----PILVVL-DEAYIEF 216
Query: 274 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333
+T S ++ + + FSK + G R+GY A P + + + +
Sbjct: 217 ----STQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYN-- 270
Query: 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 393
S ++ A AAL + + + A E R+ L FG L+ V EP + FI
Sbjct: 271 VSVAAEVAACAALS----NPKYLEDVKNALVEERERL---FGLLKEVPFLEPYPSDANFI 323
Query: 394 DFSTYYGSEAE 404
G +A+
Sbjct: 324 LCRVTSGRDAK 334
|
Length = 380 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-17
Identities = 92/392 (23%), Positives = 152/392 (38%), Gaps = 70/392 (17%)
Query: 117 INAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI---LQAVLA 173
+NAI G YT +AG +R A+ ++ +G+ P I +++GA I LQ ++
Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG 160
Query: 174 VCSPGDEVIIPAPFWVSYP-EMARIA--DATPVILPTRISENFLLDPKVLESKLTE---- 226
P D V+IP P YP A I V + + LD + LE +
Sbjct: 161 --DPSDGVMIPIP---QYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRN 215
Query: 227 --KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSF 283
R L++ +P NPTG V +++++EI + + +++++DE+Y+ IY SF
Sbjct: 216 GITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQENIYDGEKPFISF 274
Query: 284 ----ASLPGMWERTLTVNGF---SKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335
LP + + + F SK G R GY I +
Sbjct: 275 RKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--------ELTNIPPEVR---- 322
Query: 336 SISQKAGVAALGL--GYAGGEVVSKMVK---------------------AFRERRDFLVK 372
Q +A++ L G + M + + R + L
Sbjct: 323 --EQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTD 380
Query: 373 SFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430
++EGV +GA Y F I+ EA+ G C LL+ + +VPG
Sbjct: 381 ELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGL-APDVLYCLELLESTGIVVVPG 439
Query: 431 DAFG--DDTC-IRISYAASLTTLQAAVERIKK 459
FG T RI+ ++ V++IK+
Sbjct: 440 SGFGQKPGTYHFRITILPPEEQIEEMVKKIKE 471
|
Length = 481 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 3e-16
Identities = 102/383 (26%), Positives = 153/383 (39%), Gaps = 51/383 (13%)
Query: 86 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 145
A A + ++ L+ G P P LI A A Y GT ELR AI L+
Sbjct: 14 AKAASHPD-GIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLE 70
Query: 146 EENG-LSYTPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 202
G P +L G K+ + L +L + PGD V+IP + +Y A +A ATP
Sbjct: 71 RRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYPTYEVGALLAGATP 129
Query: 203 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHP 260
V + LDP L+ L SP NPTG V +DE+ IV A+
Sbjct: 130 V----AADDPTELDP--------VGPDLIWLNSPGNPTGRVLS---VDELRAIVAWARER 174
Query: 261 RLLVLSDEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316
+V SDE Y + + G L V+ SK + G+R G++AG
Sbjct: 175 GAVVASDECYLELGWEGRPVSILDPRVCG--GDHTGLLAVHSLSKRSNLAGYRAGFVAGD 232
Query: 317 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376
VA ++ + Q A VAALG V++ + RR L + E
Sbjct: 233 PALVAELLTVRKHAGLMVPAPVQAAMVAALG----DDGHVAEQKARYAARRAQLKPAL-E 287
Query: 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 436
G ++ + YL ++T G E++ L + + + PGD +G
Sbjct: 288 KAGFRIDHSEAGLYL---WAT------RG----EDAWDTVDRLAELG-ILVAPGDFYGPA 333
Query: 437 TC--IRISYAASLTTLQAAVERI 457
+R++ A+ + AAV R+
Sbjct: 334 GSQHVRVALTATDERIAAAVARL 356
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-16
Identities = 84/313 (26%), Positives = 126/313 (40%), Gaps = 47/313 (15%)
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y P G LE R + + G TPD I+ NG +I + + VI P+P
Sbjct: 69 YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI-AKIYGLLRREARVIGPSP 127
Query: 187 FWVSYP-----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCS 235
+Y E A A PV N+ D LE+K+ K LLI +
Sbjct: 128 ---AYSTHSSAEAAH-AGYPPVTYRLDPENNWYPDLDDLENKV--KYNPSIAGILLI--N 179
Query: 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL----PGMWE 291
P NPTG+VYPK +L EI I A+ L ++ DEIY +I+Y + + PG+
Sbjct: 180 PDNPTGAVYPKEILREIVDI-AREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI-- 236
Query: 292 RTLTVNGFSKAFAMTGWRLGYIA---GPK--HFVAACNKIQSQFTSGASSIS--QKAGVA 344
+ G SK G R G+I K F N I + S + Q A
Sbjct: 237 ---ALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPR 293
Query: 345 ALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400
+ Y + + K + +R + + ++ G+K++ GAFY+ + F
Sbjct: 294 IMSHPEYKNY-----LKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVL 348
Query: 401 SEAEGFGKIENSE 413
+ + IEN E
Sbjct: 349 NNKQSL-PIENPE 360
|
Length = 433 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 77/301 (25%), Positives = 121/301 (40%), Gaps = 48/301 (15%)
Query: 109 PVLIAEAGINAIREGF---TRYTPNAGTLELRSAIC--HKLKEENGLSYTPDQILVSNGA 163
P+ + E+ AI E Y P+ LELR I +L EN +++ NGA
Sbjct: 30 PLGVPESLKQAITENLDKLVEY-PDPDYLELRKRIASFEQLDLEN--------VILGNGA 80
Query: 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223
+ I V P +V+I AP + Y + DA NF + VLE +
Sbjct: 81 TELIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANEIVLE-E 137
Query: 224 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 283
+ E+ L+ LC+P+NPTG + K + +I + + ++ DE +F
Sbjct: 138 IKEEIDLVFLCNPNNPTGQLISKEEMKKIL-DKCEKRNIYLIIDE-------------AF 183
Query: 284 ASLPGMWERTLTVN------------GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331
E +N F+K FA+ G RLGY +A K+
Sbjct: 184 MDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA--EKLLQ--M 239
Query: 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391
SI+ A +A L E + K ++ +E +DFL E +G+K+ +P F
Sbjct: 240 REPWSINTFADLAGQTL-LDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIF 298
Query: 392 F 392
F
Sbjct: 299 F 299
|
Length = 354 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 84/311 (27%), Positives = 135/311 (43%), Gaps = 33/311 (10%)
Query: 102 GEPDFDTPVL-------------IAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLK 145
G P D PV + A+ E G RY P+ + LR+ + L
Sbjct: 21 GAPQLDVPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLT 79
Query: 146 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 205
+ G+ T + + +NG+ + + Q + A PG + P + +P +AR V
Sbjct: 80 AQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEG 139
Query: 206 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264
P +F LD + + E + ++ L SP+NPTG+ P LD++ I+ P ++V
Sbjct: 140 PRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALP---LDDVEAILDAAPGIVV 194
Query: 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324
+ DE Y T ++ LP + R + SKAFA G RLGY+A V A
Sbjct: 195 V-DEAY-AEFRRSGTPSALTLLPE-YPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALR 251
Query: 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384
++ + S+++Q A AAL + + V A R RD +V EL G++++
Sbjct: 252 LVRLPYH--LSAVTQAAARAAL----RHADELLASVAALRAERDRVVAWLREL-GLRVAP 304
Query: 385 PQGAFYLFIDF 395
F LF F
Sbjct: 305 SDANFVLFGRF 315
|
Length = 368 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 2e-14
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 17/215 (7%)
Query: 132 GTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 189
G + R AI H + + G +++ P+++++S GA + + + PGD +IP+P++
Sbjct: 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154
Query: 190 SYPEMARIADATPVI-LPTRISENFLLDPKVLE------SKLTEKSRLLILCSPSNPTGS 242
++ R +I +P S+NF L + + +K + LIL +PSNP G+
Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214
Query: 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT------- 295
+ K+ L + R V + LV+ DEIY ++A S A + + +
Sbjct: 215 MLDKDTLTNLVRFVTRKNIHLVV-DEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273
Query: 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330
V SK + G+R+G + V +C + S F
Sbjct: 274 VYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF 308
|
Length = 496 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 4e-14
Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 34/327 (10%)
Query: 152 YTPDQILVSNGAKQS--ILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-ILPT 207
+ PD+I+++ GA + +L +LA PGD +++P P+ YP R + T V I+P
Sbjct: 118 FDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPY---YPGFDRDLRWRTGVKIVPI 172
Query: 208 R--ISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
S NF + P+ LE+ E + R +++ +PSNP G+ +++L++I V +
Sbjct: 173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK 232
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASL------PGMWERTLTVNGFSKAFAMTGWRLGYI 313
LV SDEIY +++ + S A + G+ ER V SK + G+R+G I
Sbjct: 233 NIHLV-SDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTI 291
Query: 314 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373
V + S FT SS +Q + L + + R+R + +V+
Sbjct: 292 YSYNDKVVTTARRMSSFTL-VSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQG 350
Query: 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA- 432
G++ + + +++ S + E +L +L + ++ + PG +
Sbjct: 351 LRR-AGIECLKGNAGLFCWMNLSPLLET-----PTREGELALWDSILREVKLNISPGSSC 404
Query: 433 -FGDDTCIRISYA-ASLTTLQAAVERI 457
+ R+ +A S TL+ A++RI
Sbjct: 405 HCSEPGWFRVCFANMSEDTLEVALKRI 431
|
Length = 447 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 86/329 (26%), Positives = 137/329 (41%), Gaps = 44/329 (13%)
Query: 90 AQAGVSVI-RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 148
A+ GV I +L + E + A I E Y P+ LR AI +
Sbjct: 31 ARYGVPRIAKLGSNENPLGPSPAVRRA-FADIAELLRLY-PDPQGRALREAIAARTGVPA 88
Query: 149 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII--PA-PFWVSYPEM--ARIADATPV 203
D+I++ NG++ I AV PGD V+ P+ P YP M AR + V
Sbjct: 89 ------DRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGAR-VERVTV 141
Query: 204 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRL 262
+ + D L + + R+L+ +PSNP GS D++AR++ A P
Sbjct: 142 ------TPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTA---DQLARVLDATPPET 192
Query: 263 LVLSDEIYEHIIYAPATHTSFA-----SLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGP 316
L++ DE Y ++ LP + RT FSKA+ + G R+GY +
Sbjct: 193 LIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRT-----FSKAYGLAGLRVGYGLVSD 247
Query: 317 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376
V +++++ F + +Q A +AAL + V+ + A RER +K
Sbjct: 248 PELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVA-LALAERER----LKKELA 300
Query: 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405
G +++ P A +LF D + AE
Sbjct: 301 EMGYRIA-PSRANFLFFDARRPASAVAEA 328
|
Length = 371 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 106/393 (26%), Positives = 161/393 (40%), Gaps = 65/393 (16%)
Query: 86 ATALAQA---GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 142
A A A A G+ + L+ G P P +I EA A Y AGT ELR AI
Sbjct: 18 AKATAAAHPDGI--VDLSVGTPVDPVPPVIQEALAAA--ADAPGYPTTAGTPELREAIVG 73
Query: 143 KLKEENGLSY-TPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPAPFWVSYP--EM-ARI 197
L G++ P +L G+K+ + L PGD V+IP ++YP E+ AR+
Sbjct: 74 WLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPE---LAYPTYEVGARL 130
Query: 198 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV- 256
A AT V R L P ++ L+ L SPSNPTG V +D + ++V
Sbjct: 131 AGATVV----RADSLTELGP--------QRPALIWLNSPSNPTGRVLG---VDHLRKVVA 175
Query: 257 -AKHPRLLVLSDEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311
A+ +V SDE Y + + G L V+ SK + G+R G
Sbjct: 176 WARERGAVVASDECYLELGWDAEPVSILDPRVCG--GDHTGLLAVHSLSKQSNLAGYRAG 233
Query: 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 371
++AG VA +++ + Q A VAALG V + + + RR L
Sbjct: 234 FVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALG----DDAHVREQRERYARRRAVLR 289
Query: 372 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-AQVALV-- 428
+ E G ++ + YL + + E C + A+ ++
Sbjct: 290 PAL-EAAGFRVDHSEAGLYL-------WATRGED----------CWDTVAWLAERGILVA 331
Query: 429 PGDAFGDDTC--IRISYAASLTTLQAAVERIKK 459
PGD +G +R++ A+ + AAVER+
Sbjct: 332 PGDFYGPAGAQHVRVALTATDERIAAAVERLAA 364
|
Length = 364 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE 211
P+Q+LVS GA + I + A C PG D ++ P + Y A +PT +
Sbjct: 73 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL--D 130
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLD--EIARIVAKHPRLLVLSDE 268
N+ LD + L + +++ +CSP+NPTG+ + P++L E+ R + +V++DE
Sbjct: 131 NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTR-----GKAIVVADE 184
Query: 269 IYEHIIYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGY 312
Y I + P S A + RTL SKAFA+ G R G+
Sbjct: 185 AY--IEFCP--QASLAGWLAEYPHLVILRTL-----SKAFALAGLRCGF 224
|
Length = 351 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 32/281 (11%)
Query: 113 AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172
AE +N RY P+ L++A+ + G +L+ NG+ + I L
Sbjct: 53 AEVALN-------RY-PDPRAAALKAALRAAMGVPAGAD-----VLLGNGSDELIQLLAL 99
Query: 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLL 231
A PG V+ P P +V Y A++A V +P +F LD P +L + + L+
Sbjct: 100 ACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALV 157
Query: 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291
L P+NPTG+++ ++ RI+ P L+V+ DE Y A S+ +
Sbjct: 158 FLAYPNNPTGNLFDD---ADVERIIEAAPGLVVV-DEAY----QPFAGD-SWLPRLARFP 208
Query: 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351
L + SK + G RLGY+AG ++A +K++ + + ++Q + AL
Sbjct: 209 NLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPYN--VNVLTQATALFAL----E 261
Query: 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392
+V+ R R L + L GV + F L
Sbjct: 262 HVDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILV 302
|
Length = 356 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSY--TPDQILVSNGAKQSILQAVLAVCSPGDEVII 183
RY P+ G L+ AI + E S TP I V NG+ + I ++A C G+ I+
Sbjct: 62 RY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSIL 120
Query: 184 PAPFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTEKS----RLLILCSP 236
A S M I T PV+ R E F +D +S + + R++ + P
Sbjct: 121 VAEPTFS---MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHP 177
Query: 237 SNPTGSVYPKNLL--DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT- 293
++PTG N L E+ + + +LV+ DE Y + + T + + +
Sbjct: 178 NSPTG-----NPLTAAELEWLRSLPEDILVVIDEAY----FEFSQTTL---VGELAQHPN 225
Query: 294 -LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 352
+ + FSKAF + R+GY G +A K++ + S SQ A AL
Sbjct: 226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALE---HR 280
Query: 353 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397
E+++ + + +E RD L ++ EL +++ P A +L++ S
Sbjct: 281 QELLAAIPEILQE-RDRLYQALQELPQLRVW-PSAANFLYLRLSQ 323
|
Length = 374 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 214 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEH 272
L DP + + L L +PSNP L++IA IV + P L++++D++Y
Sbjct: 237 LRDPSI---------KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG- 286
Query: 273 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314
+ + FA LP T+ V FSK F TGWRLG IA
Sbjct: 287 -TFVDDFRSLFAVLP---YNTILVYSFSKYFGATGWRLGVIA 324
|
Length = 527 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 94/374 (25%), Positives = 150/374 (40%), Gaps = 47/374 (12%)
Query: 99 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158
L GEP F+TP I +A N +Y +AG LR A K + ++++
Sbjct: 29 LTIGEPQFETPKFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELKENELI 87
Query: 159 VSNGAKQSIL---QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FL 214
+ G ++ + Q VL + P PF+ Y E A IA V+L EN F
Sbjct: 88 PTFGTREVLFNFPQFVLFD-KQNPTIAYPNPFYQIY-EGAAIASRAKVLLMPLTKENDF- 144
Query: 215 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE----IY 270
P + E +L E L+IL SP+NPTG L E ++ KH +L ++DE IY
Sbjct: 145 -TPSLNEKELQE-VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFIL-INDECYSEIY 201
Query: 271 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330
E+ S ++ L +N SK + G R G+IAG + ++
Sbjct: 202 ENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRTYL 261
Query: 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE--RRDFLVKSFGELEGVKMSEPQGA 388
+ QKA A + E + FR ++ K E+ G+ + P
Sbjct: 262 GCASPLPLQKAAAVA----WLDDE----HAEFFRNIYAKNL--KLAREILGITI--PPAT 309
Query: 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC----IRISYA 444
FY+++ ++N E + L + ++PG G + +RI+
Sbjct: 310 FYVWL--------------PVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV 355
Query: 445 ASLTTLQAAVERIK 458
L+ A+E IK
Sbjct: 356 YDTPKLEKALEIIK 369
|
Length = 374 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 177 PGDEVIIPAPFWVSYPEMARIAD---------ATPVILPTRISENF-------LLDPKVL 220
GD++ + P + Y E+ + A + + + L DP +
Sbjct: 183 KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI- 241
Query: 221 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPAT 279
+ L + +PSNP +++I IVA P L++L+D++Y +
Sbjct: 242 --------KALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG--TFVDDF 291
Query: 280 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314
+ FA LP T+ V FSK F TGWRLG IA
Sbjct: 292 RSLFAELP---YNTIGVYSFSKYFGATGWRLGTIA 323
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 64/279 (22%), Positives = 120/279 (43%), Gaps = 24/279 (8%)
Query: 95 SVIRLAAGEPDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 153
S ++LA+ E F +P ++ E + + P+ G LR I +KL +
Sbjct: 30 SFVKLASNENPFGCSPRVLDELQKSWLDHALY---PDGGATTLRQTIANKLHVKM----- 81
Query: 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 213
+Q+L +G + I AV GD ++ + Y A I + N
Sbjct: 82 -EQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NG 137
Query: 214 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273
+ D + S + ++++ +C+P+NPTG+ L + ++++ L+V+ + YE++
Sbjct: 138 VYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYV 196
Query: 274 IYAPATHTSFASLPGMWER---TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330
T F + E+ L + FSKA+ + +R+GY G + + N ++ F
Sbjct: 197 -----TAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPF 251
Query: 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369
SS++QKA A G E+V + R+ F
Sbjct: 252 N--VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESF 288
|
Length = 366 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 36/252 (14%)
Query: 79 TVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI---------AEAGINAIREGFT---R 126
A A A A + AA P + V + + A +A R
Sbjct: 19 AAAALGLLAAAAAA----AKRAAAPPAAEGAVFLNANECPLGPSPAARDAAARSAALSGR 74
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y +LR+ + GL D ++ G+ + + AVLA SP ++ P
Sbjct: 75 YDLELED-DLRTLFA----AQEGLP--ADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADP 127
Query: 187 FWVSYPEMARIADATPV-ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245
+Y R ADA + + + D K + + + L+ +C+P+NPTG+V P
Sbjct: 128 ---TYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTP 183
Query: 246 KNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
+ +I ++A P ++L DE Y H AP S L + + + FSK +
Sbjct: 184 R---ADIEWLLANKPAGSVLLVDEAYIHFSDAP----SVVDLVAQRKDLIVLRTFSKLYG 236
Query: 305 MTGWRLGYIAGP 316
M G RLG A
Sbjct: 237 MAGMRLGLAAAR 248
|
Length = 370 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISE 211
P+QIL S GA ++I + A C PG + I A F +Y A A+ V + ++
Sbjct: 76 APEQILTSRGADEAIELLIRAFCEPGQDSI--ACFGPTYGMYAISAETFNVGVKALPLTA 133
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271
++ L +E + ++L+ +C+P+NPTG+V + +I +++ P +V+ DE Y
Sbjct: 134 DYQLPLDYIEQ--LDGAKLVFICNPNNPTGTVIDR---ADIEQLIEMTPDAIVVVDEAY- 187
Query: 272 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312
I + P S A L + + + SKAFA+ G R G+
Sbjct: 188 -IEFCPE--YSVADLLASYPNLVVLRTLSKAFALAGARCGF 225
|
Length = 354 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 40/340 (11%)
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPA 185
Y+ + G LR AI ++ +G P+ I +++GA ++ + L + S D ++ P
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223
Query: 186 PFWVSYPEMARIADATPVILPTRISE--NFLLDPKVLESKLTEKS------RLLILCSPS 237
P + Y A IA ++P + E + L+ L+ +L + R L++ +P
Sbjct: 224 PQYPLYS--ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPG 281
Query: 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLP---GMWERT 293
NPTG V + +I K L++L+DE+Y+ +Y P SF + G E+
Sbjct: 282 NPTGQVLAEENQRDIVEF-CKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKD 340
Query: 294 LTVNGF---SKAF-AMTGWRLGYIA----GPK-----HFVAA---CNKIQSQFTSGASSI 337
+++ F SK + G R GY+ + VA+ C+ I Q +
Sbjct: 341 ISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMS 400
Query: 338 SQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--ID 394
K G + A + ++S + + R L + LEGV ++ +GA YLF I
Sbjct: 401 PPKPGDESYESYMAEKDGILSSLAR----RAKTLEDALNSLEGVTCNKAEGAMYLFPRIH 456
Query: 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 434
AE ++ C+ LL+ + +VPG FG
Sbjct: 457 LPQKAIKAAEAAKTAPDA-FYCKRLLNATGIVVVPGSGFG 495
|
Length = 534 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSF 283
E + L+ L +P NP GS +P +I + P LLVL DE Y APA +
Sbjct: 154 ENAPLVYLANPDNPMGSWHPA---ADIVAFIEALPETTLLVL-DEAYCET--APAG--AA 205
Query: 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGV 343
+ + + FSKA+ + G R+GY G + A +K+++ F G + I+Q A +
Sbjct: 206 PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF--GMNRIAQAAAL 263
Query: 344 AALGLGYAGGEVVSKMVKAFRER 366
AAL EVV K + A R+R
Sbjct: 264 AALKDQAYLAEVVGK-IAAARDR 285
|
Length = 369 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 178 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237
+VIIP + Y +AR A + P DP+ LE +L E++ ++ C+P+
Sbjct: 77 DRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLE-ELVERNSVVFFCNPN 127
Query: 238 NPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 296
NP G Y K L + + + L++ DE + I + S G E + +
Sbjct: 128 NPDGKFYNFKELKPLLDAVEDR--NALLILDEAF--IDFVK----KPESPEG--ENIIKL 177
Query: 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 346
F+K++ + G R+GY+ G F A ++ ++ G++ G A L
Sbjct: 178 RTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWSIGST------GYAFL 218
|
Length = 311 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 6e-08
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
+ + V NGA + I +L D + P + Y A+ A + +P
Sbjct: 77 NNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVP------LT 126
Query: 215 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274
D ++ E + E + I +P+NPTG V+ + +EI RI+ K + L + YE
Sbjct: 127 KDLRIPEVNVGEGDVVFI-PNPNNPTGHVFER---EEIERIL-KTGAFVALDEAYYEF-- 179
Query: 275 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334
S+ L +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 180 ----HGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLPFN--V 233
Query: 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF-YLFI 393
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F ++F+
Sbjct: 234 SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFIFM 288
Query: 394 D 394
+
Sbjct: 289 E 289
|
Length = 335 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 26/211 (12%)
Query: 117 INAIREGFT--RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174
I AI+ + R+ P+ ELR A+ + P+ IL NGA + +L
Sbjct: 41 IAAIQSALSALRHYPDPDYRELRLALAQHHQ------LPPEWILPGNGAAE-LLTWAGRE 93
Query: 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS--RLLI 232
+ V + P + Y R AT LP + + L++ + + L+
Sbjct: 94 LAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLL 153
Query: 233 LCSPSNPTGSVYPKN----LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288
L +P NPTG ++ + LL++ A +V + L + + +I A + + L
Sbjct: 154 LNNPHNPTGKLWSREAILPLLEQFALVVVDEAFMDFLPPDAEQSLIPCLAEYPNLIIL-- 211
Query: 289 MWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 318
R+LT K +++ G RLGY IA P
Sbjct: 212 ---RSLT-----KFYSLPGLRLGYAIAHPDR 234
|
Length = 360 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 123 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEV 181
G Y+ + G +R + ++ +G P+ I +++GA + ++Q + AV D V
Sbjct: 99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGV 158
Query: 182 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS------RLLILCS 235
++P P + Y + T V SEN+ LD L + + R +++ +
Sbjct: 159 LVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIIN 218
Query: 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
P NPTG + L EI + RL++L DE+Y+ IY
Sbjct: 219 PGNPTGQCLSEANLREILKF-CYQERLVLLGDEVYQQNIY 257
|
Length = 407 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQI---LVSNGAKQSILQAVLAVCS-----PG 178
Y P G ELR K+ EN S + ++ +V+N L L++ + G
Sbjct: 40 YAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNA-----LTHGLSLVADLFVDQG 93
Query: 179 DEVIIPAPFWVSYPEMARIA-DATPVILPTRISENFLLDPKVLESKLTEKSR----LLIL 233
D V++P W +Y A V P E+ D L+ L ++IL
Sbjct: 94 DTVLLPDHNWGNYKLTFNTRRGAEIVTYPI-FDEDGGFDTDALKEALQAAYNKGKVIVIL 152
Query: 234 CSPSNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIYAPATHTS-FASLPG 288
P+NPTG + I + +++ + D+ Y + Y + S FA+L
Sbjct: 153 NFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALAN 212
Query: 289 MWERTLTV--NGFSKAFAMTGWRLGYI 313
+ L V +G +K + G+R+G+I
Sbjct: 213 LHSNILAVKLDGATKEEFVWGFRVGFI 239
|
Length = 388 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291
I +P+ PTG P L EI RI+A +P +V+ DE Y + + S L +
Sbjct: 149 IFPNPNAPTGIALP---LAEIERILAANPDSVVVIDEAY--VDFGGE---SAIPLIDRYP 200
Query: 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAAL 346
L V FSK+ ++ G R+G+ G + A N++++ F S ++Q +AA+
Sbjct: 201 NLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAI 256
|
Length = 353 |
| >gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 74 VKPSKTVAITDQAT-ALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINA-IREGFTRY 127
+ SK + + A AL +A +SV + D D L + + A I E F R
Sbjct: 668 EESSKFIGFSSSARSALKEAELSV-SGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQ 726
Query: 128 TPNAGTLELRSAICHKLKEENGL--SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
+ + R +I +K G + + + + + VL G + PA
Sbjct: 727 NISESETDPRPSILQFIKSNYGFPTDSC-TEFVYGDTSLALFNKLVLCCVQEGGTLCFPA 785
Query: 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS-PS-NPTGSV 243
+Y A+ A +PT+ S+ F L K L S L + + S P+ NPTG +
Sbjct: 786 GSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLL 845
Query: 244 YPKNLLDEIARIVAK 258
Y + ++EI + AK
Sbjct: 846 YSNSEIEEILSVCAK 860
|
Length = 1082 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENF 213
D+ + + A+LA+ PGDEVI+ A S Y A +A A PV +P +
Sbjct: 18 DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77
Query: 214 LLDPKVLE-SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272
LD +LE K L+++ + G + P L EI +I ++ +L+L D
Sbjct: 78 GLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVD----- 128
Query: 273 IIYAPATHTSFAS----LPGMWERTLTVN-GFSKAFAMTGWRLGYIAG 315
A AS + V K + G G +
Sbjct: 129 -----AASAGGASPAPGVLIPEGGADVVTFSLHK--NLGGEGGGVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 410 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461
SE C LL + V LVPG+ F + +RI Y TL+ ++++ + L
Sbjct: 317 MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFL 368
|
Length = 373 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 157 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 216
IL NG +SI AV++ P +I+ P + Y + R ++ + L
Sbjct: 75 ILAGNGETESIF-AVVSGLKPRRAMIV-TPGFAEYRRALQQVGCEIRRYSLREADGWQLT 132
Query: 217 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 276
+LE+ LT L LC+P+NPTG + + LL IA L+L + + I
Sbjct: 133 DAILEA-LTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE 191
Query: 277 PATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYI 313
A P +W R+LT K +A+ G RLGY+
Sbjct: 192 TGFIPQLADNPHLWVLRSLT-----KFYAIPGLRLGYL 224
|
Length = 356 |
| >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 157 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
+ VS+G + L L PGDEVI+P+ +V+ + ATPV I P +
Sbjct: 37 VAVSSGT--AALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP----D 90
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+ +DP+++E+ +T +++ +I P + G+ +D I I +H L V+ D
Sbjct: 91 TYNIDPELIEAAITPRTKAII---PVHLYGNPAD---MDAIMAIAKRH-GLPVIED 139
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352 |
| >gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 75/398 (18%), Positives = 138/398 (34%), Gaps = 123/398 (30%)
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS---ILQAVLAVCSPGDE-- 180
Y G EL A+ L E G + +P I ++NG+ QS L + A
Sbjct: 69 NYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGS-QSAFFYLFNLFAGRRADGSLK 127
Query: 181 -VIIP-APFWVSYPEMARIADATPVILPTRISENFLLDPKVLES---------------- 222
++ P AP ++ Y ADA L+ + S
Sbjct: 128 KILFPLAPEYIGY------ADAG-------------LEEDLFVSYRPNIELLPEGQFKYH 168
Query: 223 ------KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY----EH 272
+ E + + + P+NPTG+V L+++ + +H + +L D Y
Sbjct: 169 VDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAYGPPFPG 227
Query: 273 IIYAPATHTSFASLPGMW-ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331
II++ AT W + SK + G R G + + + A
Sbjct: 228 IIFSEATPL--------WNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEA--------- 269
Query: 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKA--------------FRERRDFLV----KS 373
+S G+ +L G G + ++M+++ +R++ + +
Sbjct: 270 -----LSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRY 324
Query: 374 FGELEGVKMSEPQGAFYL---FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430
+ + +P+GA +L F D +E L + L + V +VPG
Sbjct: 325 LPDEP-CLIHKPEGAIFLWLWFKDLPI-------------TTEELYQRLKARG-VLVVPG 369
Query: 431 DAF--GDD-------TCIRISYAASLTTLQAAVERIKK 459
F G D CIR++Y ++ + + +
Sbjct: 370 HYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAE 407
|
Length = 416 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-I 204
N +++ P++++++ GA + + + PGD ++P P+ YP R + T V I
Sbjct: 104 GNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPY---YPGFDRDLKWRTGVEI 160
Query: 205 LPT--------RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE-IARI 255
+P +I+E+ L + KL K + +++ +PSNP G+ + L+ + I
Sbjct: 161 VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFI 220
Query: 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----------PGMWERTLTVNGFSKAFA 304
AK+ L+ SDEIY ++ F S+ + R V SK
Sbjct: 221 TAKNIHLI--SDEIYSGTVFD---SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG 275
Query: 305 MTGWRLGYI-AGPKHFVAACNKIQS 328
+ G+R+G I + + V+A K+ S
Sbjct: 276 LPGFRVGAIYSNDEMVVSAATKMSS 300
|
Length = 468 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 177 PGDEVII-PAPF-WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232
PGDE+++ P E+A+ A ++P + ++ LLD LE +T K++L+
Sbjct: 110 PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIP--LDDDGLLDLDALEKLITPKTKLVA 167
Query: 233 LCSPSNPTGSVYPKNLLDEIARIVAKH 259
L SN TG+V P + EIA + +H
Sbjct: 168 LSHVSNVTGTVNP---VKEIAELAHEH 191
|
Length = 405 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 75/368 (20%), Positives = 136/368 (36%), Gaps = 55/368 (14%)
Query: 122 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA--VLA-VCSPG 178
E Y G L A+ L+ E G + T I ++NG++ + + A S G
Sbjct: 65 EALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDG 124
Query: 179 DE--VIIP-APFWVSYPEMARIAD----ATPVI--LPTRISENFLLDPKVLESKLTEKSR 229
E +++P AP ++ Y + D A P I LP + F + E +
Sbjct: 125 TEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLP---AGQFKYHVDFEHLHIGESTG 181
Query: 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY----EHIIYAPATHTSFAS 285
+ + P+NPTG+V L ++ + +H L++ D Y II++ AT
Sbjct: 182 AICVSRPTNPTGNVLTDEELAKLDALARQHGIPLII-DNAYGVPFPGIIFSDAT------ 234
Query: 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 345
P E + SK + G R G I + + A + + +
Sbjct: 235 -PLWNENIILCMSLSKL-GLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEM 292
Query: 346 LGLGYAGGEVVSKMVKAFRERR-----DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400
+ G + ++++ F R L + E + +P+GA +L++ F
Sbjct: 293 IESG-DLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYR-CLIHKPEGAIFLWLWFKDLPI 350
Query: 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDD-------TCIRISYAASLTTLQ 451
+ E + + L V +VPG F G D C+R++Y ++
Sbjct: 351 TTEELYQR-----------LKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIE 399
Query: 452 AAVERIKK 459
V + +
Sbjct: 400 KGVAILAE 407
|
Length = 417 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264
LP + N +P++L + L+ + SP NP G++ ++ L I+ I K LL
Sbjct: 106 LPFNLINN---NPEILNNY---NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLF 159
Query: 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318
+ DE + I + P L + + +K + R+GYIA +
Sbjct: 160 I-DEAF--IDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDY 210
|
Length = 332 |
| >gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 157 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
+ VS+G S L L PGDEVI+PA +V+ ATPV + P +
Sbjct: 43 LAVSSGT--SALHLALRALGIGPGDEVIVPAFTFVATANAVLQLGATPVFVDVDP----D 96
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVL 265
+ +DP +E+ +T +++ ++ P +L +D I I A+H L V+
Sbjct: 97 TYNIDPAAIEAAITPRTKAIM------------PVHLYGQPADMDAIRAIAAEH-GLPVI 143
Query: 266 SD 267
D
Sbjct: 144 ED 145
|
The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 362 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 52/234 (22%)
Query: 90 AQAGVSVIRLAAGEPD--------------FDTPVLIAEAGINA-----IREGFTRYTPN 130
G + LA G PD TP L +A ++ P
Sbjct: 81 GDPGTPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPV 140
Query: 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS 190
A ++L ++GA +I + + A PGD V + P ++S
Sbjct: 141 AFEIDL-----------------------TSGAIDAIERLLCAHLLPGDSVAVEDPCFLS 177
Query: 191 YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYPKNL 248
M R A + + +E + P+ LE L + +R +IL +P NPTG
Sbjct: 178 SINMLRYAGFSASPVSVD-AEG--MQPEKLERALAQGARAVIL-TPRAHNPTGCSLSARR 233
Query: 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302
+ ++A++P++LV+ D+ + + +P +P +R + SKA
Sbjct: 234 AAALRNLLARYPQVLVIIDDHFALLSSSPYHSV----IPQTTQRWALIRSVSKA 283
|
Length = 431 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 28/168 (16%)
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--S 210
TPD++L+ GA + A+LA P ++ F + PE A A PV R+
Sbjct: 74 TPDEVLLLAGAAEGF--ALLARLRPRRAAVVHPSF--TEPEAALRAAGIPV---HRVVLD 126
Query: 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 270
F LDP + + + + L+++ +P+NPT ++P L + R R+LV+ DE +
Sbjct: 127 PPFRLDP----AAVPDDADLVVIGNPTNPTSVLHPAEQLLALRR----PGRILVV-DEAF 177
Query: 271 EHIIYAPATHTSFA--SLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAG 315
+ P S A LPG+ R+LT K +++ G R+GY G
Sbjct: 178 ADAV--PGEPESLAGDDLPGVLVLRSLT-----KTWSLAGLRVGYALG 218
|
Length = 349 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 157 ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
+ VS+G + L L + PGDEVI+P+ +V+ + A PV I P +
Sbjct: 53 VAVSSGT--AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP----D 106
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+DP ++E+ +T +++ +I P + G +D I + +H L V+ D
Sbjct: 107 TLNIDPDLIEAAITPRTKAII---PVHLAGQPCD---MDAIMALAKRH-GLPVIED 155
|
Length = 374 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 18/121 (14%)
Query: 154 PDQILVSNGAKQSI---LQAVLAVCSPGDEVII-----PAPF--WVSYPEMARIADATPV 203
++I+ ++G ++I ++ PGDE+++ A W E+A+ AT
Sbjct: 61 DEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQ---ELAKRTGATVR 117
Query: 204 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263
++P + N LLD LE LT +++L+ + SN TG+V P ++EI ++ ++ L+
Sbjct: 118 VIP--VDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNP---VEEIGKLAHEYGALV 172
Query: 264 V 264
V
Sbjct: 173 V 173
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 158 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL-- 214
+ NG S +LAVC PGD+++I S ++ A PV L P R +
Sbjct: 79 FLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAG 138
Query: 215 -LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268
+ P+ + L E ++ ++ +P G Y L +I A H L VL DE
Sbjct: 139 GIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVE-EAHHRGLPVLVDE 190
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294 |
| >gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 29/152 (19%)
Query: 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI--ADATPVILPTRISENFLL- 215
V NG + + AV +PGD+V++ + A ATPV L + + +
Sbjct: 91 VVNGTSTANKAVINAVLTPGDKVLVDRN--CHKSIHHGLILAGATPVYLEPSRNPLYGII 148
Query: 216 ---DPKVLESKLTEK---SRLLILCSPSNPT--GSVY-PKNLLDEIARIVAK------HP 260
+ + L +L ++ +NPT G Y + +++ + A HP
Sbjct: 149 GGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHP 205
Query: 261 RLLVLSDEIYEH------IIYAPATHTSFASL 286
S + E +TH A+L
Sbjct: 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAAL 237
|
Length = 557 |
| >gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 162 GAKQSILQAVLAVCS---------------PGDEVIIPAPFWVSYPEMARIADATPVILP 206
G + +I AV S PGDEVI P+ WVS M + ATPV++
Sbjct: 47 GNQHAI-----AVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVD 101
Query: 207 TRISENFLLDPKVLESKLTEKSRLLI 232
+ ++ P+ +E+ +T +++ +I
Sbjct: 102 VD-RDTLMVTPEAIEAAITPRTKAII 126
|
Length = 379 |
| >gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL--- 214
V NG + +AVC+PGD V+I S ++ ATPV L PTR + +
Sbjct: 87 VVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSGATPVYLEPTRNAYGIIGGI 146
Query: 215 ----LDPKVLESKLTE--KSRLLILCSPSNPT--GSVYPKNLLDEIARIVAKHPRLLVLS 266
+ ++ L E ++ L +N T G++Y EI H +L
Sbjct: 147 PLHEFQEETIKEALAEVPPAKGPRLAVITNGTYDGTIYN---AKEIVDT-LGHLSDYILF 202
Query: 267 DE---IYEHIIYAPATHT 281
D YE I A +
Sbjct: 203 DSAWVGYEQFIPIYADAS 220
|
Length = 417 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| PLN02721 | 353 | threonine aldolase | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| PLN02483 | 489 | serine palmitoyltransferase | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.98 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.98 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.98 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.98 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.98 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.98 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.97 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.97 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.97 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.97 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.97 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.97 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.97 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.97 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.97 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.96 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.96 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.96 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.96 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.96 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.96 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.96 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.96 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.96 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.96 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.96 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.96 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.96 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.96 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.95 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.95 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.95 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.95 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.95 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.95 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.95 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.95 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.95 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.95 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.94 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.94 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.94 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.94 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.94 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.93 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.93 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.93 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.93 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.93 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.93 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.93 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.93 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.93 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.93 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.92 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.92 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.92 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.92 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.92 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.92 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.92 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.92 | |
| PLN02651 | 364 | cysteine desulfurase | 99.92 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.92 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.92 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.92 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.91 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.91 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.91 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.91 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.91 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.91 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.91 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.91 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.91 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.9 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.9 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.9 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.9 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.9 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.9 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.9 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.9 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.9 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.9 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.9 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.89 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.89 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.88 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.88 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.88 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.88 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.88 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.88 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.88 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.88 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.88 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.87 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.87 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.87 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.86 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.85 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.85 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.85 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.85 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.85 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.84 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.84 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.83 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.83 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.83 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.83 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.83 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.83 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.82 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.82 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.82 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.81 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.81 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.81 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.81 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.81 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.8 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.8 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.8 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.8 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.8 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.8 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.8 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.8 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.8 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.8 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.79 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.79 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.79 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.79 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.79 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.79 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.78 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.78 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.78 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.78 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.78 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.78 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.77 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.77 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.77 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.77 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.77 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.77 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.77 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.77 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.77 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.76 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.76 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.76 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.76 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.76 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.76 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.75 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.75 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.74 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.74 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.74 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.74 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.73 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.73 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.73 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.73 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.72 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.72 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.71 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.7 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.7 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.7 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.69 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.69 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.69 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.69 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.67 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.67 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.66 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.66 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.65 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.64 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.63 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.62 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.62 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.61 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.59 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.59 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.59 | |
| PLN02263 | 470 | serine decarboxylase | 99.59 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.58 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.58 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.57 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.56 | |
| COG1725 | 125 | Predicted transcriptional regulators [Transcriptio | 99.56 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.56 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.55 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.55 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.54 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.54 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.53 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.53 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.52 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.52 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.52 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.51 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.51 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.51 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.5 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.46 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.43 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.41 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.41 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.31 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.31 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.26 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 99.25 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.23 | |
| COG2186 | 241 | FadR Transcriptional regulators [Transcription] | 99.17 | |
| COG2188 | 236 | PhnF Transcriptional regulators [Transcription] | 99.16 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.15 | |
| TIGR02404 | 233 | trehalos_R_Bsub trehalose operon repressor, B. sub | 99.15 | |
| TIGR02325 | 238 | C_P_lyase_phnF phosphonates metabolism transcripti | 99.14 | |
| PRK14999 | 241 | histidine utilization repressor; Provisional | 99.14 | |
| PRK11402 | 241 | DNA-binding transcriptional regulator FrlR; Provis | 99.12 | |
| TIGR02018 | 230 | his_ut_repres histidine utilization repressor, pro | 99.11 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.11 | |
| PRK09764 | 240 | DNA-binding transcriptional repressor MngR; Provis | 99.09 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.09 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.08 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.06 | |
| PRK10079 | 241 | phosphonate metabolism transcriptional regulator P | 99.05 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.02 | |
| PRK04984 | 239 | fatty acid metabolism regulator; Provisional | 99.02 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.98 | |
| TIGR02812 | 235 | fadR_gamma fatty acid metabolism transcriptional r | 98.93 | |
| PRK10225 | 257 | DNA-binding transcriptional repressor UxuR; Provis | 98.91 | |
| PRK09990 | 251 | DNA-binding transcriptional regulator GlcC; Provis | 98.91 | |
| PRK11523 | 253 | DNA-binding transcriptional repressor ExuR; Provis | 98.91 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.91 | |
| PRK09464 | 254 | pdhR transcriptional regulator PdhR; Reviewed | 98.9 | |
| PRK10421 | 253 | DNA-binding transcriptional repressor LldR; Provis | 98.89 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.86 | |
| PRK03837 | 241 | transcriptional regulator NanR; Provisional | 98.84 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.8 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.79 | |
| TIGR03337 | 231 | phnR transcriptional regulator protein. This famil | 98.77 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.7 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.69 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 98.65 | |
| PRK11414 | 221 | colanic acid/biofilm transcriptional regulator; Pr | 98.57 | |
| TIGR03338 | 212 | phnR_burk phosphonate utilization associated trans | 98.57 | |
| PRK11534 | 224 | DNA-binding transcriptional regulator CsiR; Provis | 98.56 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.25 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.25 | |
| COG1802 | 230 | GntR Transcriptional regulators [Transcription] | 98.14 | |
| PF14502 | 48 | HTH_41: Helix-turn-helix domain | 98.14 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.11 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.84 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 97.82 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.7 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.26 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 97.07 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.85 | |
| TIGR02787 | 251 | codY_Gpos GTP-sensing transcriptional pleiotropic | 96.57 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.4 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.36 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 95.81 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 95.46 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 94.77 | |
| PRK12423 | 202 | LexA repressor; Provisional | 94.65 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 93.35 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 92.74 | |
| PF08222 | 61 | HTH_CodY: CodY helix-turn-helix domain; InterPro: | 91.97 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 91.58 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 90.77 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 89.97 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 89.92 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 89.8 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 89.37 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 88.46 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 88.36 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 88.24 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 88.12 | |
| COG1654 | 79 | BirA Biotin operon repressor [Transcription] | 87.64 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 86.94 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 86.65 | |
| PRK11886 | 319 | bifunctional biotin--[acetyl-CoA-carboxylase] synt | 85.55 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 84.89 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 84.78 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 84.4 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 82.95 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 82.89 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 82.25 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 82.12 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 82.06 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 81.5 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 81.41 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 81.26 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 80.38 |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-73 Score=567.62 Aligned_cols=425 Identities=23% Similarity=0.356 Sum_probs=371.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHH
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQ 85 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~ 85 (470)
-..|.+|+|+||+||||+|+||+.|+||++| ||++|+.||||++++| |+.++.....+.... .....
T Consensus 14 ~~~I~~g~l~~g~rLPs~R~la~~l~vs~~Tv~~ay~~L~~~G~i~~~~g-s~~~~~~~~~~~~~~---------~~~~~ 83 (459)
T COG1167 14 REAILSGRLKPGDRLPSIRQLAQDLGVSRSTVSRAYEELEARGYIESRPG-SAPPSGRPVRLELLK---------PSDPE 83 (459)
T ss_pred HHHHHcCCCCCCCcCCcHHHHHHHhCCcHHHHHHHHHHHHhCcceeeccC-CCcccccccccchhh---------hhhcc
Confidence 3579999999999999999999999999999 9999999999999999 754443221110000 00000
Q ss_pred HHHHHhcCCCeEEccCCCCCCCC-h-HHHHHHHHHHHHc---C-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE
Q 012124 86 ATALAQAGVSVIRLAAGEPDFDT-P-VLIAEAGINAIRE---G-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV 159 (470)
Q Consensus 86 ~~~~~~~~~~~i~l~~g~~~~~~-~-~~~~~a~~~~~~~---~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i 159 (470)
.. ......++|+.|.|+... | ..+.+++.+.+.. . ...|+++.|.++||++|++++...+|+.+++++|++
T Consensus 84 ~~---~~~~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~Iii 160 (459)
T COG1167 84 LL---EDDPSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVI 160 (459)
T ss_pred cc---cCCCceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEE
Confidence 00 234578999999987655 4 4566666666643 2 578888899999999999999988999999999999
Q ss_pred ecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEE-cCCC
Q 012124 160 SNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLIL-CSPS 237 (470)
Q Consensus 160 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l-~~p~ 237 (470)
|+|++++++++++.+++|||+|++++|+|++...+++..|+++++||++.++ +|+|.|++.++. ++|++|+ ++.|
T Consensus 161 T~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G---~~~e~le~~~~~~~~k~~y~~P~~q 237 (459)
T COG1167 161 TSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDG---IDPEALEEALAQWKPKAVYVTPTFQ 237 (459)
T ss_pred eCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC---CCHHHHHHHHhhcCCcEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999997443 999999999965 7898876 7779
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||.+||.+++++|+++|++| |++|||||+|++|.|++.+.+++..++. .++|||++||||+++ ||+|+||+++|+
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~-~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~ 314 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKY-DVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPP 314 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHc-CCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCH
Confidence 9999999999999999999999 9999999999999999888888888887 699999999999996 999999999999
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-C-CCeecCCCceEEEeeec
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-E-GVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~g~~~~~~~ 395 (470)
++++.+...+...+.+++.+.|.+++.++.+|.+ ++|++++++.|++|++.+.+.|.+. + ++.+..|.+|||+|+++
T Consensus 315 ~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l 393 (459)
T COG1167 315 ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLEL 393 (459)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEc
Confidence 9999999999999999999999999999998887 9999999999999999999999985 4 57899999999999999
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCCCC----CcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFGDD----TCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~~~----~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
|+.+ +..++.+.++++ ||.+.| |..|... +++||+|+. +++++++++.+|.+++++..
T Consensus 394 ~~~~-----------~~~~l~~~a~~~-gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 394 PEGI-----------DARELLAAALEK-GVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred CCCC-----------CHHHHHHHHHHC-CCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9875 888999888766 888888 8888653 489999999 89999999999999998764
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=535.04 Aligned_cols=409 Identities=18% Similarity=0.202 Sum_probs=349.5
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHH
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITD 84 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~ 84 (470)
..+.|.+|.|+||+||||+|+||++|+|||+| ||++|++||+|++++| +||||...... . ..
T Consensus 14 i~~~i~~g~l~~g~~lps~r~la~~~~vsr~tv~~a~~~L~~~g~i~~~~~-~G~~v~~~~~~--~---~~--------- 78 (431)
T PRK15481 14 IRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGR-NGTVIRGSPSP--V---AL--------- 78 (431)
T ss_pred HHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CceEEccCcch--h---hh---------
Confidence 45689999999999999999999999999999 9999999999999999 99999643210 0 00
Q ss_pred HHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 85 QATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 85 ~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
.....+...++|+.|.|+.++++.+.+++.+... ....|+++.|.++||+++++++.+..+ .+++|++|+|++
T Consensus 79 ---~~~~~~~~~i~L~~g~p~~~~~p~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~ 151 (431)
T PRK15481 79 ---EGGDPGTPLHDLAGGNPDPQRLPDLSRYFARLSR-TPRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAI 151 (431)
T ss_pred ---cccCCcchhhhhhcCCCChhHhHHHHHHHHHhhh-hhhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcH
Confidence 0001223468999999998876777777777554 356799999999999999999875322 356999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEc-CCCCCcccC
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSV 243 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~-~p~nPtG~~ 243 (470)
++|.+++.++++|||.|++++|+|+.+...++..|++++.+|++.+ ++|+|.|++++++++++++++ +||||||.+
T Consensus 152 ~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~ 228 (431)
T PRK15481 152 DAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQGARAVILTPRAHNPTGCS 228 (431)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhcCCCEEEECCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999643 389999999998789998885 999999999
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 323 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l 323 (470)
+|.+++++|+++|+++++++||+||+|.+|.+++. .+.... ..+++|+++||||.|+ ||+|+||+++++++++.+
T Consensus 229 ~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~~--~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~ 303 (431)
T PRK15481 229 LSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIPQ--TTQRWALIRSVSKALG-PDLRLAFVASDSATSARL 303 (431)
T ss_pred CCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCcC--CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHH
Confidence 99999999999999876799999999999876432 222222 2479999999999999 999999999999999999
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcc
Q 012124 324 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 403 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 403 (470)
.........+.+.+.|.++..+|+++.+ .+|++++++.|+++++.+.+.|++. |+.+..|.+|+|+|+++|.
T Consensus 304 ~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~------ 375 (431)
T PRK15481 304 RLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT------ 375 (431)
T ss_pred HHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC------
Confidence 8776666667899999999999998765 7889999999999999999999987 8888789999999999974
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|.+ +||.+.||..|+. .+++||+++. +++++++++++|++++.
T Consensus 376 -------~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 376 -------DSQATALTLAK-SGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred -------CHHHHHHHHHH-CCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 45778888765 5999999999964 3589999998 88999999999999875
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=501.76 Aligned_cols=358 Identities=43% Similarity=0.728 Sum_probs=333.1
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCc-EEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~-i~it~g~~~al~~~~~ 172 (470)
.++|+|+.|+|++++|+.+++++.+++..+...|++..|.++||++|++++.+++|+.+++++ |++|+|++++|..++.
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 479999999999999999999999999875437779999999999999999999998888876 9999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++|||+|++++|.|+.|...+..+|++++.++++.+ ++|.+|++.|++++++++|+|++++||||||.+++++++++
T Consensus 108 a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~ 187 (393)
T COG0436 108 ALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKA 187 (393)
T ss_pred HhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHH
Confidence 99999999999999999999999999999999998655 48999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~ 330 (470)
|+++|++| |++||.||+|.++.|++..+.++..+.+..+++|.+.||||.++|+|||+||++++ +++++.+.+++...
T Consensus 188 i~~~a~~~-~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~ 266 (393)
T COG0436 188 IVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYL 266 (393)
T ss_pred HHHHHHHc-CeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhc
Confidence 99999999 99999999999999998667777777665689999999999999999999999999 88999999999999
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeeccCccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
.+|++.+.|.++.++|+.... ..+++.+++.|++||+.+.+.|.+++|+.+.. |+++||+|++++...
T Consensus 267 ~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~---------- 335 (393)
T COG0436 267 TSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL---------- 335 (393)
T ss_pred ccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCC----------
Confidence 999999999999999997432 46888899999999999999999998899888 889999999998742
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
++.+|+.+|++++||.|.||..|+.+ +++|+|++.+.+++++++++|+++++..
T Consensus 336 -d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 336 -DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred -CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999975 7999999998799999999999998764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=461.94 Aligned_cols=378 Identities=23% Similarity=0.389 Sum_probs=324.9
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
++..++......+..........|+++|+|+.|+|++++++.+.+++.+.+.. ....|+++.|.++||++|++|+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~ 85 (388)
T PRK07366 6 RLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRF 85 (388)
T ss_pred hhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 34444444444555555566667889999999999998899999999988764 35679889999999999999999888
Q ss_pred CCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 149 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 149 g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
|+.++++ +|++|+|+++++.+++.++++|||+|++++|+|+.+...++..|++++.+|++.++++.+|++.+++.+.++
T Consensus 86 g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 165 (388)
T PRK07366 86 GLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQ 165 (388)
T ss_pred CCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhccc
Confidence 9989998 699999999999999999999999999999999999999999999999999987777889999998888778
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC-cccccccCCCCCceEEEeccCcccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++.. .+++.+++...+++|+++||||.+|+|
T Consensus 166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQH-DLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence 99999999999999999999999999999999 9999999999999987643 456666665456799999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+.+.+.....+.+...|.++...+.. .++|+++.++.|+++++.+.+.|+++ |+.+..|.
T Consensus 245 GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~---~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~ 320 (388)
T PRK07366 245 GFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG---PQATVQQTVQIFRQRRDAFINALHQI-GWPVPLPE 320 (388)
T ss_pred chhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 999999999999999999888777766655445555555543 37899999999999999999999988 78877899
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+|+|+|+++|+.+. .++.++++.|++++||.+.||..|+. ++++||+++.+++++++++++|++++
T Consensus 321 ~g~f~~~~~~~~~~---------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 321 ATMYVWAKLPEPWQ---------GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred eeEEEEEECCcccC---------CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 99999999986321 14678888887777999999999974 47999999988999999999998753
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=460.01 Aligned_cols=375 Identities=26% Similarity=0.476 Sum_probs=330.4
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+.+.....++....+.....+....++++|+|+.|.|++.+++.+.+++.+.+.. ....|+ +.|.++||++|++|+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~ 84 (399)
T PRK07681 6 ATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNN 84 (399)
T ss_pred hHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHH
Confidence 3444445555555555555555556778999999999988888999999887754 234453 58999999999999999
Q ss_pred HcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 147 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 147 ~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+|+.+++ ++|++|+|+++++.+++.+++++||.|++++|+|+.+...++..|++++.+|++.+++|.+|++.+++++.
T Consensus 85 ~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 164 (399)
T PRK07681 85 THNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA 164 (399)
T ss_pred HhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 89999998 89999999999999999999999999999999999999999999999999999877778899999999988
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++.++++..+++|+++||||.+|+
T Consensus 165 ~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 243 (399)
T PRK07681 165 DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSL 243 (399)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence 8899999999999999999999999999999999 999999999999998766556666666545789999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
||+|+||+++++++++.+........++++.+.|.++..+|.++ .+++++.++.|+++++.+.+.|++. |+.+..|
T Consensus 244 ~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p 319 (399)
T PRK07681 244 AGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG---AAFCEKNRGIYQERRDTLVDGFRTF-GWNVDKP 319 (399)
T ss_pred ccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCC
Confidence 99999999999999999998887777789999999999999873 5789999999999999999999988 8888788
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
.+|+|+|+++++.+ ++.++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++
T Consensus 320 ~~g~f~~~~l~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 320 AGSMFVWAEIPKGW-----------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred CeeeEEEEECCCCC-----------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999999998653 6788999998867999999999874 479999999888999999999988
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=456.63 Aligned_cols=374 Identities=32% Similarity=0.595 Sum_probs=328.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++.++..+.......+.+.. .+.++|+|+.|.|++++|+.+.+++.+.+.++...|+++.|.++||+++++++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~ 106 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLA-----IKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKK 106 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHh-----hcCCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 34445555555544443332 2347899999999998899999999998877668899999999999999999999
Q ss_pred HcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 147 ~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+|++++++ +|++|+|+++++.+++.++++|||+|++++|+|+.+...++..|++++.++++.++ +.+|++.|++.++
T Consensus 107 ~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~l~~~~~ 185 (413)
T PLN00175 107 DTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPEDELKAAFT 185 (413)
T ss_pred HhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHHHHHHhcC
Confidence 889988987 79999999999999999999999999999999999999999999999999997544 7899999999998
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++ ...++.++++..+++|+++||||.|++
T Consensus 186 ~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~~~~ 263 (413)
T PLN00175 186 SKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKTFSL 263 (413)
T ss_pred cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhhccC
Confidence 8999999999999999999999999999999999 99999999999998865 344666666556899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+........++++.+.|.++..+|+. .+.|+++.++.|+++++.+.+.|++. |+.+..|
T Consensus 264 ~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p 339 (413)
T PLN00175 264 TGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRA---PESYYEELKRDYSAKKDILVEGLKEV-GFKVYPS 339 (413)
T ss_pred cchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC
Confidence 9999999999999999999888777889999999999999986 36789999999999999999999988 8888899
Q ss_pred CceEEEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 386 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-----~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
.+|||+|++++. .. .++.++++.|++++||.+.||..|+. .+++||+++.+++++++++++|++
T Consensus 340 ~g~~f~~~~~~~~~~----------~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~ 409 (413)
T PLN00175 340 SGTYFVMVDHTPFGF----------ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKT 409 (413)
T ss_pred CeeEEEEEeccccCC----------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHH
Confidence 999999999853 11 14678999998778999999998852 369999999999999999999999
Q ss_pred HHH
Q 012124 460 GLL 462 (470)
Q Consensus 460 ~l~ 462 (470)
+++
T Consensus 410 ~~~ 412 (413)
T PLN00175 410 KLK 412 (413)
T ss_pred HHh
Confidence 876
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=452.11 Aligned_cols=382 Identities=26% Similarity=0.451 Sum_probs=328.1
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcC
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENG 149 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g 149 (470)
+.....+....+.....+....+.++++|+.|.|+.++|+.+++++.+.+.. ....|+++.|.++||+++++|+.+.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~ 89 (403)
T PRK08636 10 IKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYN 89 (403)
T ss_pred HHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3344555556666666677777888999999999988777777777776654 468899999999999999999998889
Q ss_pred CCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH----hhhc
Q 012124 150 LSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL----ESKL 224 (470)
Q Consensus 150 ~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l----~~~l 224 (470)
+.++++ +|++|+|+++++.+++.++++|||.|++++|+|+.+...++..|+++++++++.++++++|++.+ ++++
T Consensus 90 ~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 169 (403)
T PRK08636 90 VDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKAL 169 (403)
T ss_pred CCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHH
Confidence 988987 79999999999999999999999999999999999999999999999999986556688998754 5555
Q ss_pred c---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 225 T---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 225 ~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+ .+++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...+++..++...+++|+++||||
T Consensus 170 ~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK 248 (403)
T PRK08636 170 RESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE-RFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSK 248 (403)
T ss_pred hhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccc
Confidence 3 4788899999999999999999999999999999 99999999999998876555677777654468899999999
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
.+|+||+|+||+++|+++++.+.+.......+++.+.|.++..+++. ...|++++++.|+++++.+.+.|++. |+.
T Consensus 249 ~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 324 (403)
T PRK08636 249 SYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG---DQSCVEEIRETYRKRRDVLIESFANA-GWE 324 (403)
T ss_pred ccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 99889999999999999999999887766677888899988877764 36899999999999999999999987 788
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+..|.+|+|+|+++|+.+. ..++.++++.+++++||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 325 ~~~p~~g~~~~~~l~~~~~--------~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~ 396 (403)
T PRK08636 325 LQKPRASMFVWAKIPEPAR--------HLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKK 396 (403)
T ss_pred ccCCCcceEEEEECCCccC--------CCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 8889999999999986420 014678888878777999999999975 479999999888999999999999
Q ss_pred HHHhhC
Q 012124 460 GLLTLR 465 (470)
Q Consensus 460 ~l~~~~ 465 (470)
+++.++
T Consensus 397 ~l~~~~ 402 (403)
T PRK08636 397 FLKELE 402 (403)
T ss_pred HHHhhc
Confidence 998754
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=452.42 Aligned_cols=359 Identities=23% Similarity=0.346 Sum_probs=318.3
Q ss_pred CCCeEEccCCCCCC-CChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHH
Q 012124 93 GVSVIRLAAGEPDF-DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQ 169 (470)
Q Consensus 93 ~~~~i~l~~g~~~~-~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~ 169 (470)
+.+.|+|+.|.|+. .+|+.+.+++.+.+.. ....|++..|.++||++|++++.+.+|+++++ ++|++|+|+++++..
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~ 117 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFL 117 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence 34789999999983 4567888888888765 35679889999999999999999988988888 899999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc---CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCH
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR---ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~---~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~ 246 (470)
++.+++++||+|++++|+|+.+...++..|++++.++++ .++++++|++.|+++++++++++++++||||||.+++.
T Consensus 118 ~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~ 197 (405)
T PRK06207 118 AVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSA 197 (405)
T ss_pred HHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCH
Confidence 999999999999999999999999999999999999986 23467899999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 326 (470)
+++++|+++|++| +++||+||+|.++.|++...+++..++...+++|+++||||.+++||+|+||+++++++++.+...
T Consensus 198 e~l~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~ 276 (405)
T PRK06207 198 EEIAQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKL 276 (405)
T ss_pred HHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHH
Confidence 9999999999999 999999999999998765555555554446899999999999999999999999999999999998
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCC
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 406 (470)
......+.+.+.|.++..+|++ ...++++..+.++++++.+.+.|++++++.+..|.+|+|+|++++...
T Consensus 277 ~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~------- 346 (405)
T PRK06207 277 QAIVSLRAAGYSQAVLRTWFSE---PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLA------- 346 (405)
T ss_pred HhHhccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccC-------
Confidence 8888888899999999999986 246777888888899999999998887888888999999999998520
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+..++++.|++++||.+.||..|+. ++++||+++.+.+++++++++|++++++++
T Consensus 347 ---~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 347 ---VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred ---CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 15788999888777999999999864 579999999988999999999999998765
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=448.64 Aligned_cols=352 Identities=34% Similarity=0.608 Sum_probs=316.6
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+++++|+.|+|++.+++.+.+++.+........|+++.|.++||+++++++.+.+|+.+++++|++|+|+++++.+++.
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 107 (384)
T PRK06348 28 FPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQ 107 (384)
T ss_pred cCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHH
Confidence 35689999999998888888777666665667889999999999999999999888999999999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++++||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++.+++++++|++++||||||.++|.+++++|
T Consensus 108 ~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l 187 (384)
T PRK06348 108 SILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEI 187 (384)
T ss_pred HhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHH
Confidence 99999999999999999999999999999999998666678899999999998899999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|+++ +++||+||+|.++.|++ ...++..++...+++|+++||||.+++||+|+||+++++++++.+........+
T Consensus 188 ~~~a~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~ 265 (384)
T PRK06348 188 AKIAIEY-DLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICF 265 (384)
T ss_pred HHHHHHC-CeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhccC
Confidence 9999999 99999999999998864 344556665445799999999999999999999999999999999988887778
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC-ccCCcccCCCCCCC
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST-YYGSEAEGFGKIEN 411 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~ 411 (470)
+++.+.|.++..++.. .+++++++++.|+++++.+.+.|++++++.+..|++|||+|++++. .+ +
T Consensus 266 ~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~~-----------~ 331 (384)
T PRK06348 266 SAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKTGL-----------S 331 (384)
T ss_pred CCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccCCC-----------C
Confidence 8999999999999975 4788999999999999999999998878888899999999999974 22 6
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
+.++++.|++++||.+.||..|+. ++++|++++.+++++++++++|+++
T Consensus 332 ~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 332 SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 788999888777999999999975 4799999988889999999999764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=456.54 Aligned_cols=379 Identities=22% Similarity=0.361 Sum_probs=314.6
Q ss_pred HHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCc
Q 012124 81 AITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 156 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~ 156 (470)
.+.....+....|+++++++.|+| ++.+|+.+.+++.+.+.. ...+|++..|.++||+++++|+.+.+|+.+++++
T Consensus 19 ~~~~~~~~~~~~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~ 98 (433)
T PRK06855 19 NIVAVAKKLEKLGVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDD 98 (433)
T ss_pred HHHHHHHHHHhccccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhH
Confidence 344445555566788999999999 678899999998887754 4578999999999999999999988899999999
Q ss_pred EEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEE
Q 012124 157 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLIL 233 (470)
Q Consensus 157 i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l 233 (470)
|++|+|++++|.+++. +++|||.|++++|+|+.+... ....|++++.++++++++|.+|++.|+++++ ++++++++
T Consensus 99 I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l 177 (433)
T PRK06855 99 IIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILL 177 (433)
T ss_pred EEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEE
Confidence 9999999999999885 789999999999999998754 3456999999999877788899999999996 46789999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
++||||||.++|.+++++|+++|++| |++||+||+|.++.|++...+++.++.+ ..++|+++||||.+++||+|+||+
T Consensus 178 ~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG~i 255 (433)
T PRK06855 178 INPDNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNIVYNGKKTVPLSEVIG-DVPGIALKGISKELPWPGSRCGWI 255 (433)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCCHHHHcC-cCCeEEEecCccccCCCcceEEEE
Confidence 99999999999999999999999999 9999999999999987655667777654 247899999999998899999999
Q ss_pred EcC-----H---HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 314 AGP-----K---HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 314 ~~~-----~---~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
++| + ++++.+..... ...+++.+.|.++..+++++.+ ++|++++++.|++|++.+.+.|++++|+.+..|
T Consensus 256 i~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p 333 (433)
T PRK06855 256 EVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRT 333 (433)
T ss_pred EEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCC
Confidence 973 2 23333333332 2456889999999999988655 789999999999999999999988878888899
Q ss_pred CceEEEeeeccCccCCcccCC----------------CCCCCHHHHHHHHHHcCCEEEECCCCCCCC-CcEEEEeec-CH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGF----------------GKIENSESLCRYLLDKAQVALVPGDAFGDD-TCIRISYAA-SL 447 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~-~~iRls~~~-~~ 447 (470)
++|||+|+++|+.+.....+. +...++.+++..|+++.||.+.||..|+.. .++||+|+. ++
T Consensus 334 ~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~~ 413 (433)
T PRK06855 334 NGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERDE 413 (433)
T ss_pred CeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCcH
Confidence 999999999986420000000 000135678878888889999999999753 479999997 99
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012124 448 TTLQAAVERIKKGLLTL 464 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~ 464 (470)
++|++++++|+++++++
T Consensus 414 ~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 414 EKFEWIYQTLAEKIEEY 430 (433)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999864
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-57 Score=448.57 Aligned_cols=396 Identities=43% Similarity=0.708 Sum_probs=340.5
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++....+.....+.+..++....++++++|+.|.|++++++.+.+++.+.+.....+|+++.|.++||+++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 85 (402)
T PRK06107 6 PAARVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLER 85 (402)
T ss_pred hhHHhhhcCccHHHHHHHHHHHHHhccCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34445555555555555666666667788999999999998888899999998876677899999999999999999998
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+.+++++|++|+|+++++..++.+++++||+|++++|+|..|...+...|.+++.++++.++++.+|++.+++.+++
T Consensus 86 ~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~ 165 (402)
T PRK06107 86 RNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP 165 (402)
T ss_pred hcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcCc
Confidence 88998899999999999999999999999999999999999999999999999999999987666788999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC-CCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~sK~~~~ 305 (470)
+++++++++||||||.++|.+++++|+++|+++++++||+||+|.++.|.+...+++..+++ ..+++|+++||||.|++
T Consensus 166 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 245 (402)
T PRK06107 166 RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAM 245 (402)
T ss_pred CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcC
Confidence 89999999999999999999999999999999547999999999999887655566666543 34799999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
||+|+||+++++++++.+.........+++.+.|.++..+|.. .+.++++.++.|+++++.+.+.|++++|+.+..|
T Consensus 246 pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p 322 (402)
T PRK06107 246 TGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG---DQSFVTESVAVYKQRRDYALALLNAIPGLSCLVP 322 (402)
T ss_pred cccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC
Confidence 9999999999999999999988877888999999999999975 3678999999999999999999998878888899
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
++|||+|++++..............+..+++++|++++||.+.||..|+.++++|++|+.+++++++++++|++++++++
T Consensus 323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~ 402 (402)
T PRK06107 323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETLEEACARIERAVAALR 402 (402)
T ss_pred CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999985321000000000125678888888888999999999988899999999999999999999999987753
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=448.08 Aligned_cols=376 Identities=28% Similarity=0.466 Sum_probs=327.0
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
+++....+.....+..........++++|+|+.|+|+.++++.+.+++.+.+... ...|++..|.++||+++++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~ 86 (389)
T PRK08068 7 ELLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKRE 86 (389)
T ss_pred hHhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444555555556656565555667789999999999887888899988887653 568988999999999999999988
Q ss_pred cCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 148 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 148 ~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+|++++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+|++.++++.+|++.+++.+++
T Consensus 87 ~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 166 (389)
T PRK08068 87 YGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE 166 (389)
T ss_pred hCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc
Confidence 89888988 89999999999999999999999999999999999999999999999999998666788999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++....+..+++|+++||||.||++
T Consensus 167 ~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~-~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 167 KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA 245 (389)
T ss_pred cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc
Confidence 899999999999999999999999999999999 9999999999998886533344444333356899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+.+.......+.+++.|.++..++.. ...++++.++.|+++++.+.+.|+++ |+.+..|.
T Consensus 246 GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~~~ 321 (389)
T PRK08068 246 GWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLS---DQSCVAELVARYESRRNAFISACREI-GWEVDAPK 321 (389)
T ss_pred cceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 999999999999999999888777777777889998888865 36889999999999999999999988 88888899
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
+|+|+|+++++.. ++.++++.|++++||.+.||..|+. ++++|++++.+++++++++++|+++
T Consensus 322 g~~~~~v~~~~~~-----------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 322 GSFFAWMPVPKGY-----------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred eeEEEEEECCCCC-----------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 9999999998643 6789999988777999999999875 5799999998888999999998763
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-57 Score=446.38 Aligned_cols=371 Identities=30% Similarity=0.527 Sum_probs=327.6
Q ss_pred ccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCC
Q 012124 73 AVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLS 151 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~ 151 (470)
....+....+.+...+....|+++++|+.|+|++.+++.+++++.+.+.. ....|+++.|.++||+++++|+.+.+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~ 87 (383)
T TIGR03540 8 NLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVE 87 (383)
T ss_pred cCChhHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 33344444555556666667889999999999988888999999987764 35789999999999999999999888988
Q ss_pred CCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceE
Q 012124 152 YTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 230 (470)
Q Consensus 152 ~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 230 (470)
++++ +|++|+|+++++..++..++++||+|++++|+|+.+...++..|++++.+|++.++++.+|++.+++.+.+++++
T Consensus 88 ~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~ 167 (383)
T TIGR03540 88 LDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKL 167 (383)
T ss_pred CCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccccceE
Confidence 8876 699999999999999999999999999999999999999999999999999987777888999999999889999
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee
Q 012124 231 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 310 (470)
Q Consensus 231 i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~ 310 (470)
+++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...+++..++...+++|+++||||.+|++|+|+
T Consensus 168 v~i~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi 246 (383)
T TIGR03540 168 MFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRI 246 (383)
T ss_pred EEEeCCCCCcCccCCHHHHHHHHHHHHHc-CEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcccee
Confidence 99999999999999999999999999999 99999999999998876556666666644578899999999999999999
Q ss_pred eEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE
Q 012124 311 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 390 (470)
Q Consensus 311 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~ 390 (470)
||+++++++++.+.........+++.+.|.++..++.+ ..+|++++++.++++++.+.+.|++. |+.+..|.+|+|
T Consensus 247 G~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~ 322 (383)
T TIGR03540 247 GMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFY 322 (383)
T ss_pred eEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCCCcceE
Confidence 99999999999998887766677888999999999986 37899999999999999999999998 898888999999
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+|+++++.+ +..+++++|++++||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 323 ~~~~l~~~~-----------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 323 VWVPVPEGY-----------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred EEEECCCCC-----------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 999998643 6788999887777999999999974 479999999888999999999864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-57 Score=447.15 Aligned_cols=376 Identities=32% Similarity=0.564 Sum_probs=330.4
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++++....++....+.....+....++++++|+.|+|++.+++.+.+++.+.+.. ....|+++.|.++||+++++|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~ 84 (385)
T PRK09276 5 ADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKR 84 (385)
T ss_pred hhHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 3344455555555555556666667888999999999998888999999988764 357898889999999999999998
Q ss_pred HcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 147 ~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+|+.++++ +|++|+|+++++..++..+++|||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++.+.
T Consensus 85 ~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~ 164 (385)
T PRK09276 85 RFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA 164 (385)
T ss_pred HhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 889888887 5999999999999999999999999999999999999999999999999999766678899999999888
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...+++..+++..+++|+++||||.||+
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 243 (385)
T PRK09276 165 KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNM 243 (385)
T ss_pred ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCC
Confidence 8999999999999999999999999999999999 999999999999988765566776666545789999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+.+.+.....+.+.+.|.++..++.+ .+.|++++++.++++++.+.+.|+++ |+.+..|
T Consensus 244 ~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 319 (385)
T PRK09276 244 TGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIYQERRDILVEGLRKL-GLEVEPP 319 (385)
T ss_pred cchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC
Confidence 9999999999999999999887766777888899999999975 37899999999999999999999988 8888888
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
.+|+|+|+++++.. +..+++++|++++||.+.||..|+. ++++||+++.+++++.+++++|++
T Consensus 320 ~~~~~~~v~~~~~~-----------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 320 KATFYVWAPVPKGY-----------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred CcceEEEEECCCCC-----------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 99999999998653 6788999888777999999998875 479999999888999999999864
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-57 Score=447.88 Aligned_cols=372 Identities=25% Similarity=0.412 Sum_probs=321.3
Q ss_pred cccccCCchHHHHHHHHHHH-HhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 70 RVNAVKPSKTVAITDQATAL-AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
++..++.+....+.+.+.+. ...|+++|+|+.|+|++++++.+.+++.+.+. ....|+++.|.++||++|++|+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~ 82 (396)
T PRK09147 4 RLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLERRY 82 (396)
T ss_pred hhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 34455566666666666554 34688999999999999888999999888765 57889999999999999999999888
Q ss_pred CCC-CCCC-cEEEecChHHHHHHHHHHhcCC---CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 149 GLS-YTPD-QILVSNGAKQSILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 149 g~~-~~~~-~i~it~g~~~al~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
|++ ++++ +|++|+|+++++.++++++++| ||.|++++|+|+.+...++..|++++.+|++.+++|++|++.+++.
T Consensus 83 g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~ 162 (396)
T PRK09147 83 GLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAE 162 (396)
T ss_pred CCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHH
Confidence 988 8885 9999999999999999999999 8999999999999999999999999999998777889999999988
Q ss_pred ccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-Cccc-ccc---cC-CCCCceEEEe
Q 012124 224 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTS-FAS---LP-GMWERTLTVN 297 (470)
Q Consensus 224 l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~-~~~---~~-~~~~~~i~i~ 297 (470)
+.++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ...+ +.. +. ...+++|+++
T Consensus 163 ~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 241 (396)
T PRK09147 163 VWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRY-GFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFH 241 (396)
T ss_pred HhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEe
Confidence 877899999999999999999999999999999999 999999999999988653 1112 111 11 1247999999
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
||||.++++|+|+||+++++++++.+.+.......+++.+.|.++.+.+.. ++++++.++.|+++++.+.+.|++.
T Consensus 242 S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~ 317 (396)
T PRK09147 242 SLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAPV 317 (396)
T ss_pred ccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999899999999999999999998877666677899999998888753 6789999999999999999999874
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASLTT 449 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------~~~iRls~~~~~~~ 449 (470)
+.+..|.+|+|+|+++| . +..+++++|++++||.+.||..|+. .+++||+++.++++
T Consensus 318 --~~~~~p~~g~f~~~~~~-~------------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~ 382 (396)
T PRK09147 318 --LDVQLPDAGFYLWAKVP-G------------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAE 382 (396)
T ss_pred --cCCCCCCeeEEEEEECC-C------------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHH
Confidence 56667899999999998 2 5778888888777999999998852 46899999998899
Q ss_pred HHHHHHHHHHHHH
Q 012124 450 LQAAVERIKKGLL 462 (470)
Q Consensus 450 i~~~l~~l~~~l~ 462 (470)
+++++++|+++++
T Consensus 383 l~~~l~rl~~~~~ 395 (396)
T PRK09147 383 CVEAAERIVDFCR 395 (396)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998874
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=445.00 Aligned_cols=375 Identities=27% Similarity=0.505 Sum_probs=325.1
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
++..+.++....+.+.+......|+++++|+.|+|+.++|+.+++++.+.+.. ....|+++.|.++||+++++|+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~ 90 (394)
T PRK05942 11 RLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRY 90 (394)
T ss_pred hhccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34444444444444445555567888999999999987777788877776654 35789999999999999999999888
Q ss_pred CCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 149 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 149 g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
|++++++ +|++|+|+++++..++.++++|||+|++++|+|+.+...+...|++++.++++.+++|.+|++.+++.++++
T Consensus 91 ~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 170 (394)
T PRK05942 91 GVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQ 170 (394)
T ss_pred CCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcccc
Confidence 9888888 589999999999999999999999999999999999999999999999999987777889999999999889
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++++++++||||||.++|.+++++|+++|+++ +++||+||+|.++.|++....++.++++..+++|+++||||.||++|
T Consensus 171 ~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G 249 (394)
T PRK05942 171 AKILYFNYPSNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG 249 (394)
T ss_pred ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChh
Confidence 99999999999999999999999999999999 99999999999998876555666666543467899999999999999
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
+|+||+++++++++.+.........+.+.+.|.++..+|+. .++++++.++.|+++++.+.+.|++. |+.+..|.+
T Consensus 250 lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~ 325 (394)
T PRK05942 250 WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPTKA 325 (394)
T ss_pred hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCe
Confidence 99999999999999999888766778899999999999975 47899999999999999999999887 788888999
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
|+|+|+++|..+ ++.+++.++++++||.+.||..|+. ++++|++++.+.+.+.+++++|.++
T Consensus 326 ~~f~~~~~~~~~-----------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 326 TMYLWVPCPVGM-----------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred eeEEEEECCCCC-----------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 999999998643 6778888777778999999999864 5799999998888999999998764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=443.37 Aligned_cols=377 Identities=32% Similarity=0.552 Sum_probs=332.7
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++.++.+....++.....+....++++++|+.|.|++++|+.+.+++.+.+......|.+..|.++||+++++++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~ 85 (387)
T PRK08960 6 SRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQR 85 (387)
T ss_pred hhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 44556666777777777777666778899999999999888999999999988766678989999999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|+.+++++|++|+|++++|..++.++++|||+|++++|+|+.+...++..|.+++.++++.++++.+|++.+++.++++
T Consensus 86 ~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~ 165 (387)
T PRK08960 86 YGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNAD 165 (387)
T ss_pred hCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCcc
Confidence 89999999999999999999999999999999999999999999999999999999999987777889999999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++++++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++. ..++..+ .+++|+++||||.+|++|
T Consensus 166 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~Y~~~~~~~~-~~~~~~~---~~~vi~~~S~SK~~g~~G 240 (387)
T PRK08960 166 TVGALVASPANPTGTLLSRDELAALSQALRAR-GGHLVVDEIYHGLTYGVD-AASVLEV---DDDAFVLNSFSKYFGMTG 240 (387)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccCCC-CCChhhc---cCCEEEEeecccccCCcc
Confidence 99999999999999999999999999999999 999999999999888642 3344333 468999999999999999
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCC
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~ 386 (470)
+|+||+++++++++.+.+.......+++.+.|.++..++.+. ...++++.++.|+++++.+.+.|+++ |+.+ ..|.
T Consensus 241 lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~ 317 (387)
T PRK08960 241 WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPE--TLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQ 317 (387)
T ss_pred cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCC
Confidence 999999999999999998888778889999999999998752 26889999999999999999999987 6654 4688
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+|+|+|+++++.. .++.+++++|++++||.+.||..|+. ++++|++++.+.+++++++++|.++++
T Consensus 318 g~~f~~~~~~~~~----------~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 318 GAFYLYADISAFG----------GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred eeEEEEEeccccC----------CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9999999998520 16788988888777999999999975 369999999988999999999998775
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=459.22 Aligned_cols=388 Identities=25% Similarity=0.424 Sum_probs=325.7
Q ss_pred CccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHH
Q 012124 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~ 142 (470)
..+.++.++..+....+...+......|+++|+|+.|+| ++++|+.+++++.+++.. ...|++..|.++||++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~~Y~~~~G~~~lReaia~ 196 (517)
T PRK13355 118 KKSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TEGYSDSKGLFSARKAIMQ 196 (517)
T ss_pred ChhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCcChHHHHHHHHH
Confidence 356666677777776677777878888999999999999 566788999999888764 5679999999999999999
Q ss_pred HHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
|+.++.+..+++++|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.++++.+++|.+|++.+++
T Consensus 197 ~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~ 276 (517)
T PRK13355 197 YAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRS 276 (517)
T ss_pred HHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHH
Confidence 99876555689999999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred hccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 223 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 223 ~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++++++++|++++||||||.+++.+++++|+++|++| +++||+||+|.+|.|++....++..+.+ ...+++++||||.
T Consensus 277 ~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~-~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-~~~vi~~~S~SK~ 354 (517)
T PRK13355 277 KITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDRLVMDGLEHTSIASLAP-DLFCVTFSGLSKS 354 (517)
T ss_pred hcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhhcCCCCCcccHHHhCC-CCeEEEEecchhh
Confidence 9998999999999999999999999999999999999 9999999999999998655667766654 3468889999999
Q ss_pred cccccceeeEEEcC--HHH----HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 303 FAMTGWRLGYIAGP--KHF----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 303 ~~~~G~r~G~~~~~--~~~----~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
|+++|+|+||++++ +++ ++.+... .....+.+.+.|.++..+|.......+++.+.++.+ ++++++.+.|++
T Consensus 355 ~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~ 432 (517)
T PRK13355 355 HMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVY-EQRELVYNALNA 432 (517)
T ss_pred ccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 99999999999954 443 4444333 234457889999999999964221256666655554 567999999999
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHH
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAV 454 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l 454 (470)
++|+++..|+++||+|++++... .+..++.+++..++++.||.+.||..|+ .+++|||+++.++++|++++
T Consensus 433 ~~g~~~~~p~g~fy~~~~l~~~~-------~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~ 505 (517)
T PRK13355 433 IPGISAVKPKAAFYIFPKIDVKK-------FNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAM 505 (517)
T ss_pred CCCcccCCCCeeeEEEeecCccc-------CCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHH
Confidence 88999999999999999986420 0011466777777777899999999997 36899999988999999999
Q ss_pred HHHHHHHHhhC
Q 012124 455 ERIKKGLLTLR 465 (470)
Q Consensus 455 ~~l~~~l~~~~ 465 (470)
++|+++++.++
T Consensus 506 ~rl~~~~~~~~ 516 (517)
T PRK13355 506 DRLADFFSYYR 516 (517)
T ss_pred HHHHHHHHHhh
Confidence 99999998654
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=443.55 Aligned_cols=381 Identities=27% Similarity=0.442 Sum_probs=325.3
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcC
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENG 149 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g 149 (470)
+..+..+....+..........|+++|+|+.|+|++.+++.+++++.+.+.. ....|+++.|.++||+++++++.+.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g 86 (405)
T PRK09148 7 IRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFG 86 (405)
T ss_pred hhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3344445555555555556667889999999999988888888888887754 357899999999999999999998889
Q ss_pred CCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 150 LSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 150 ~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
+.++++ +|++|+|++++|.+++..++++||+|++++|+|+.+...++..|++++.++++.++++..+++.+.+...+++
T Consensus 87 ~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~ 166 (405)
T PRK09148 87 VKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKP 166 (405)
T ss_pred CCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhccccc
Confidence 888887 8999999999999999999999999999999999999999999999999999766655445555544445688
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
+++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...+++..++...+++|+++||||.+|+||+
T Consensus 167 ~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl 245 (405)
T PRK09148 167 IALIVNYPSNPTAYVADLDFYKDVVAFAKKH-DIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW 245 (405)
T ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcch
Confidence 9999999999999999999999999999999 999999999999988765455566665445678999999999999999
Q ss_pred eeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce
Q 012124 309 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g 388 (470)
|+||+++++++++.+.+.+.....+++.+.|.++..+|.+ .+.++++.++.|+++++.+.+.|+++ |+.+..|.+|
T Consensus 246 R~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~---~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g 321 (405)
T PRK09148 246 RMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG---PQDCIAEMRELYKKRRDVLVESFGRA-GWDIPPPAAS 321 (405)
T ss_pred heeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCCCee
Confidence 9999999999999999988877778899999999999975 36889999999999999999999987 7877788999
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+|+|+++|.... ..+..++++.|+++.||.+.||..|+. ++++||+++.+.+++.+++++|.+++++.
T Consensus 322 ~f~~~~l~~~~~--------~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~ 391 (405)
T PRK09148 322 MFAWAPIPEAFR--------HLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSSA 391 (405)
T ss_pred EEEEEECCCccC--------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 999999986421 013578888888777999999999975 47999999888899999999999998754
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=457.30 Aligned_cols=396 Identities=22% Similarity=0.364 Sum_probs=322.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHh---------cCCCeEEccCCCCC----------------CCC-------------
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQ---------AGVSVIRLAAGEPD----------------FDT------------- 108 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~l~~g~~~----------------~~~------------- 108 (470)
+++++..++++....+..++.++.+ +|.++|+|+.|+|+ +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~ 89 (481)
T PTZ00377 10 INPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSLF 89 (481)
T ss_pred cCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCccccccC
Confidence 5666777777766666666666655 45799999999996 665
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCeEEEc
Q 012124 109 PVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIP 184 (470)
Q Consensus 109 ~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~ 184 (470)
|..+++++.+.+.. ....|+++.|.++||++|++++.+.+|+++++++|++|+|+++++.+++++++ +|||+|+++
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~ 169 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIP 169 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEEC
Confidence 34777777766654 35679999999999999999999989999999999999999999999999998 799999999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 012124 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 258 (470)
Q Consensus 185 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~ 258 (470)
+|+|+.|...++..|++++.++++.+++|.+|++.|++++++ ++|++++++||||||.++|.+++++|+++|++
T Consensus 170 ~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~ 249 (481)
T PTZ00377 170 IPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYE 249 (481)
T ss_pred CCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998778899999999999864 78999999999999999999999999999999
Q ss_pred CCCEEEEEeccccccccCC-CCcccccc----cCCC---CCceEEEeccCcc-cccccceeeEEEc---CHHHHHHHHHH
Q 012124 259 HPRLLVLSDEIYEHIIYAP-ATHTSFAS----LPGM---WERTLTVNGFSKA-FAMTGWRLGYIAG---PKHFVAACNKI 326 (470)
Q Consensus 259 ~~~~~iI~Dd~~~~~~~~~-~~~~~~~~----~~~~---~~~~i~i~S~sK~-~~~~G~r~G~~~~---~~~~~~~l~~~ 326 (470)
| +++||+||+|.++.|++ ....++.. ++.. ..++|+++||||. +++||+|+||+++ |+++++.+.+.
T Consensus 250 ~-~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~ 328 (481)
T PTZ00377 250 K-GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKL 328 (481)
T ss_pred C-CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHH
Confidence 9 99999999999999853 23344432 3321 1379999999997 5899999999986 99999999887
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCC----hHH---HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc--C
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYAG----GEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS--T 397 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~~----~~~---~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~--~ 397 (470)
.. ...+++.+.|.++..+++..... +.+ ++++++.|+++++.+.+.|++++|+.+..|++|||+|++++ .
T Consensus 329 ~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~ 407 (481)
T PTZ00377 329 AS-INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPE 407 (481)
T ss_pred hh-eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCch
Confidence 75 34578999999999999642110 223 44555568999999999999988999999999999997763 2
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
........ .+..++..++..++++.||.+.||+.|+. ++++|||++.+++++++++++|++++++..
T Consensus 408 ~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~ 477 (481)
T PTZ00377 408 KAIQEAKE-RGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFM 477 (481)
T ss_pred hhHHHHHh-cCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 11000000 00113455667778788999999999974 359999999888899999999999988754
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-56 Score=446.15 Aligned_cols=365 Identities=23% Similarity=0.408 Sum_probs=314.1
Q ss_pred cCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 92 AGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 92 ~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.++++|+|+.|+|+ +.+++.+.+++.+++..+ ...|++..|.++||++|++|+.+.+|..+++++|++|+|++++
T Consensus 64 ~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~a 143 (462)
T PLN02187 64 VNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQG 143 (462)
T ss_pred CCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHH
Confidence 46689999999998 455788999999888754 4679999999999999999999888988999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCH
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~ 246 (470)
|.+++.++++|||+|++++|+|+.|...++..|++++.+++.++++|++|++.|+++++++++++++++||||||.+++.
T Consensus 144 l~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~ 223 (462)
T PLN02187 144 IEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSH 223 (462)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCH
Confidence 99999999999999999999999999999999999999999766789999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC--HH---HHH
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP--KH---FVA 321 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~--~~---~~~ 321 (470)
+++++|+++|++| +++||+||+|.++.|++....++..++. ..++|+++||||.|++||+|+||++++ .. +++
T Consensus 224 e~l~~i~~~a~~~-~i~iI~DE~Y~~l~f~~~~~~s~~~~~~-~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~ 301 (462)
T PLN02187 224 DHLKKVAETARKL-GIMVISDEVYDRTIFGDNPFVSMGKFAS-IVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTK 301 (462)
T ss_pred HHHHHHHHHHHHC-CCEEEEeccccccccCCCCceeHHHhcc-CCcEEEEecchhhcCCccceeEEEEecCchhHHHHHH
Confidence 9999999999999 9999999999999987655556666654 367999999999999999999999984 33 345
Q ss_pred HHHHHhhhccC--CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCc
Q 012124 322 ACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 322 ~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~ 398 (470)
.+...+..... +++.+.|.++.++|+++ .++|+++.++.++++++.+.+.|+++++.. +..|.+|+|+|++++..
T Consensus 302 ~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~--~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~ 379 (462)
T PLN02187 302 VLQSIKQNLDVTPDPATIIQAALPAILEKA--DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELS 379 (462)
T ss_pred HHHHHHHhccccCCCCHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChh
Confidence 66666665544 45899999999999752 268999999999999999999999885544 34688999999987531
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.. .+..++.+++.+++++.||.+.||..|+.+++|||+|+.+++.+++++++|+++++++..
T Consensus 380 ~~------~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~rL~~~l~~~~~ 441 (462)
T PLN02187 380 LM------DNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALERLKGFCTRHAK 441 (462)
T ss_pred hC------CCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 00 001145677777877789999999999888999999999999999999999999987654
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-56 Score=439.06 Aligned_cols=355 Identities=45% Similarity=0.733 Sum_probs=317.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~ 172 (470)
+++|+|+.|+|++.+++.+.+++.+.+......|++..|.++||+++++++.+.+|+.++++ +|++|+|+++++.+++.
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 46899999999988888888888888776667898899999999999999999889888886 89999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
++++|||+|++++|+|+.+...++..|.+++.++++.++++++|++.++++++++++++++++||||||.++|.+++++|
T Consensus 100 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 100 AIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred HhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHH
Confidence 99999999999999999999999999999999998766678899999999998899999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|++| +++||+||+|.++.|++. ..++..+++..+++++++||||.|++||+|+||+++++++++.+.........
T Consensus 180 ~~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~ 257 (378)
T PRK07682 180 AVIVEKH-DLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMM 257 (378)
T ss_pred HHHHHHc-CcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhcc
Confidence 9999999 999999999999998753 33445555445789999999999999999999999999999999887766667
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC-ccCCcccCCCCCCC
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST-YYGSEAEGFGKIEN 411 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~ 411 (470)
+++.+.|.++..+|+++ +.+++++++.|+++++.+.+.|+++ |+.+..|++|||+|+.++. .+ +
T Consensus 258 ~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~~~-----------~ 322 (378)
T PRK07682 258 CAPTMAQFAALEALRAG---NDDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISSTGL-----------S 322 (378)
T ss_pred CCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCCCC-----------C
Confidence 78999999999999873 5678999999999999999999998 8888889999999998853 22 6
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+.++++.|++++||.+.||..|+. ++++||+++.+++++++++++|++++++++
T Consensus 323 ~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~ 378 (378)
T PRK07682 323 SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKRMKRFVENKK 378 (378)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 788998888667999999999975 579999999988999999999999998754
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=441.27 Aligned_cols=363 Identities=23% Similarity=0.429 Sum_probs=315.9
Q ss_pred CCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 93 GVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 93 ~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
++++|+|+.|+|+ +++++.+.+++.+++..+ ...|++..|.++||+++++++.+.+|..+++++|++|+|++++|
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 7799999999986 667889999999988764 45898899999999999999998889889999999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHH
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
.+++..+.+|||+|++++|+|+.|.......|++++.+++.++++|.+|++.++++++++++++++++||||||.+++.+
T Consensus 131 ~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~ 210 (430)
T PLN00145 131 EIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYE 210 (430)
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999987777899999999999998999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc--CHHHHH----
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVA---- 321 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~--~~~~~~---- 321 (470)
++++|+++|+++ |++||+||+|.++.|++....++..++. .+++|+++||||.|++||+|+||+++ |..+++
T Consensus 211 ~l~~i~~~a~~~-~i~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~ 288 (430)
T PLN00145 211 HLAKIAETARKL-GILVIADEVYDHLTFGSKPFVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKV 288 (430)
T ss_pred HHHHHHHHHHHc-CCEEEEeccchhhccCCCCccchhhhcc-cCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHH
Confidence 999999999999 9999999999999987655566666654 57899999999999999999999997 444443
Q ss_pred --HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCCceEEEeeeccCc
Q 012124 322 --ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTY 398 (470)
Q Consensus 322 --~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~ 398 (470)
.+.... ....+++.+.|.++..+|+.+ .+.++++.++.++++++.+.+.|++++|+.+ ..|+++||+|++++..
T Consensus 289 ~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~ 365 (430)
T PLN00145 289 VDSIRNYL-NISTDPATFVQGAIPQIIANT--KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLS 365 (430)
T ss_pred HHHHHHHh-cccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChh
Confidence 333333 234457889999999999853 2688999999999999999999999888875 4799999999998742
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
. ..+..++.+++.+|++++||.+.||..|+.++|+||+|+.+++++++++++|++++.+.+.
T Consensus 366 ~------~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~~~~~~~~ 427 (430)
T PLN00145 366 C------LSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKSFCLRHAK 427 (430)
T ss_pred h------cCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 0 0001156778888888889999999999989999999999889999999999999987764
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-56 Score=441.25 Aligned_cols=366 Identities=22% Similarity=0.389 Sum_probs=311.9
Q ss_pred hcCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 91 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
..++++|+|+.|+|+ +++|+.+.+++.+++... ...|++..|.++||++|++++.+.+|+.+++++|++|+|+++
T Consensus 29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~ 108 (409)
T PLN00143 29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKH 108 (409)
T ss_pred CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHH
Confidence 357799999999998 888999999999988764 567999999999999999999988898899999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++.+++.+++++||.|++++|+|+.+...++..|++++.++++.++++.+|++.|+++++++++++++++||||||.++|
T Consensus 109 al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s 188 (409)
T PLN00143 109 AAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYS 188 (409)
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccC
Confidence 99999999999999999999999999999999999999999876667889999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc--CHHHH---
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFV--- 320 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~--~~~~~--- 320 (470)
.+++++|+++|++| +++||+||+|.++.|++....++..++. .+++|+++||||.|++||+|+||+++ ++.++
T Consensus 189 ~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~ 266 (409)
T PLN00143 189 YEHLNKIAETARKL-GILVIADEVYGHIVFGSKPFVPMGLFAS-IVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQIC 266 (409)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEccccccccCCCCCcchhhhcc-cCcEEEEccchhhcCCCccceEEEEeeCchhhhhhH
Confidence 99999999999999 9999999999999987644445555544 46899999999999999999999998 33343
Q ss_pred ---HHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeecc
Q 012124 321 ---AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFS 396 (470)
Q Consensus 321 ---~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~ 396 (470)
+.+.+.... ...++.+.|.++..+|+++ ...++++.++.++++++.+.+.|.++++.. +..|++|+|+|++++
T Consensus 267 ~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~ 343 (409)
T PLN00143 267 EIADSIKKALNP-APFPPTFIQAAIPEILEKT--TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLN 343 (409)
T ss_pred HHHHHHHHHHhc-cCCCCchHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecc
Confidence 333333332 3345889999999999753 267889999999999999999998875443 346889999999997
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCCC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
.... .+..++.+++.+++++.||.+.||..|+.++++||+++.++++++++++||+++++++.+.
T Consensus 344 ~~~~------~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~~ 408 (409)
T PLN00143 344 LLLL------EDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408 (409)
T ss_pred hhhc------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHhccC
Confidence 4200 0011467787777777799999999998889999999998999999999999999877653
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=436.90 Aligned_cols=355 Identities=40% Similarity=0.659 Sum_probs=320.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++|+|+.|+|++++++.+.+++.+.+......|.+..|.++||+++++++.+.+|..+++++|++|+|+++++.+++.+
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 112 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFES 112 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHH
Confidence 46899999999998888999999998877677898999999999999999998889889999999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
++++||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++.++++++++++++||||||.++|.+++++|+
T Consensus 113 l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~ 192 (391)
T PRK08361 113 LLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIA 192 (391)
T ss_pred hcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 99999999999999999999999999999999998777788999999999998999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++|+++ +++||+||+|.++.|++....++..++ .+++++++||||.+|++|+|+||+++++++++.+.........+
T Consensus 193 ~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~ 269 (391)
T PRK08361 193 DIAEDY-NIYILSDEPYEHFLYEGAKHYPMIKYA--PDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGN 269 (391)
T ss_pred HHHHHc-CeEEEEEcccccceeCCCCCCCHhhcC--CCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccC
Confidence 999999 999999999999988654445555554 36899999999999999999999999999999988877666678
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC-ccCCcccCCCCCCCH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST-YYGSEAEGFGKIENS 412 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 412 (470)
.+.+.|.++..+|.++.. .+++++.++.++++++.+.+.|++++|+.+..|++|+|+|+++++ .+ +.
T Consensus 270 ~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~-----------~~ 337 (391)
T PRK08361 270 VASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGM-----------SS 337 (391)
T ss_pred CChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCC-----------CH
Confidence 899999999999987654 578999999999999999999999888999999999999999974 22 67
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.++++.|++++||.+.||..|+. ++++||+++.+++++++++++|++++++
T Consensus 338 ~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 338 EDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred HHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 88998888777999999999875 4799999999888999999999998875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=438.60 Aligned_cols=365 Identities=24% Similarity=0.425 Sum_probs=317.1
Q ss_pred hcCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 91 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
..|+++|+|+.|+|+ +++|+.+.+++.+++... ...|++..|.++||+++++++.+.+|..+++++|++|+|+++
T Consensus 28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 107 (409)
T PLN02656 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQ 107 (409)
T ss_pred ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHH
Confidence 467899999999998 777899999999988764 578999999999999999999988898899999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++.+++.+++++||+|++++|+|+.+...++..|++++.++++.++++.+|++.++++++++++++++++||||||.++|
T Consensus 108 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s 187 (409)
T PLN02656 108 AIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYS 187 (409)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999989999999999999976667889999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC--------H
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP--------K 317 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~--------~ 317 (470)
.+++++|+++|+++ +++||+||+|.++.|++....++..++. .+++|+++||||.|++||+|+||++++ +
T Consensus 188 ~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~ 265 (409)
T PLN02656 188 YQHLKKIAETAEKL-KILVIADEVYGHLAFGSNPFVPMGVFGS-IVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDP 265 (409)
T ss_pred HHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCcccHHHhcc-cCcEEEEcccchhccCcceeEEEEEEeCcccccccH
Confidence 99999999999999 9999999999999987654455555544 578999999999998999999999984 5
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeecc
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFS 396 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~ 396 (470)
++++.+.+.... ..+++.+.|.++..+|+++ .+.++++.++.++++++.+.+.|++++++. +..|.+|+|+|++++
T Consensus 266 ~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~ 342 (409)
T PLN02656 266 KIVERIKKYFDI-LGGPATFIQAAVPTILEQT--DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLN 342 (409)
T ss_pred HHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecc
Confidence 788888876554 3467899999999999853 267899999999999999999999876554 357899999999986
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
...- ....++.+++..++++.||.+.||+.|+.++++||+++.+++++++++++|++++.+...
T Consensus 343 ~~~~------~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~ 406 (409)
T PLN02656 343 LSLL------EDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSK 406 (409)
T ss_pred hhhc------CCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3200 000135566666666779999999999888999999999999999999999999987654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=434.54 Aligned_cols=380 Identities=35% Similarity=0.584 Sum_probs=325.9
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++..........+.....+....++++++|+.|.|++++++.+.+++.+.+......|++..|.++||+++++|+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~ 83 (388)
T PRK07337 4 AARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARR 83 (388)
T ss_pred hhHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34444445555555555666666677889999999999888888999999888766788988999999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|+.+++++|++|+|+++++.+++.+++++||+|++++|+|+.+...++..|++++.+|++.++++.+|++.+++.++++
T Consensus 84 ~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (388)
T PRK07337 84 FGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGER 163 (388)
T ss_pred hCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCcc
Confidence 89889999999999999999999999999999999999999999999999999999999986667889999999999889
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
+++|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|.+. ..+...+ .+++|+++||||.+|++|
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~-~~~~~~~---~~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 164 TRGVLLASPSNPTGTSIAPDELRRIVEAVRAR-GGFTIVDEIYQGLSYDAA-PVSALSL---GDDVITINSFSKYFNMTG 238 (388)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC-CCEEEEeccccccccCCC-CcChhhc---cCCEEEEEechhhcCCch
Confidence 99999999999999999999999999999999 999999999999887653 2233332 467999999999999999
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCC
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~ 386 (470)
+|+||+++++++++.+.........+.+.+.|.++..++.++. ..+.++.++.|+++++.+.+.|+++ |+.+ ..|.
T Consensus 239 ~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~ 315 (388)
T PRK07337 239 WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYERRRAEFKRRRDFIVPALESL-GFKVPVMPD 315 (388)
T ss_pred hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCC
Confidence 9999999999999999988877777889999999999997543 3456888999999999999999987 6654 4688
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+|+|+|+++++... .+..++.+++++|++++||.+.||..|+. ++++||+++.+++++++++++|.+++
T Consensus 316 ~g~f~~~~~~~~~~------~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 316 GAFYVYADCRGVAH------PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred eeEEEEEecccccC------CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 99999999975200 00116778888888778999999999975 47999999998899999999998865
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=434.13 Aligned_cols=374 Identities=28% Similarity=0.442 Sum_probs=320.1
Q ss_pred hHHHHHHHHHHHHh--cCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCC-CC
Q 012124 78 KTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLS-YT 153 (470)
Q Consensus 78 ~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~-~~ 153 (470)
+...+....+.+.. ++.++|+|+.|+|++.+++.+++++.+.+.. ....|+ ..|.++||+++++|+.+.+|+. ++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~ 104 (410)
T PRK06290 26 KFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDID 104 (410)
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCC
Confidence 33334333344432 4667999999999999988899988887654 345685 5899999999999999888987 88
Q ss_pred CC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEE
Q 012124 154 PD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232 (470)
Q Consensus 154 ~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~ 232 (470)
++ +|++|+|++++|..++.+++++||.|++++|+|+.+...++..|++++.++++.++++.+|++.+++.+.+++++|+
T Consensus 105 ~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~ 184 (410)
T PRK06290 105 PVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLY 184 (410)
T ss_pred CcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEE
Confidence 86 79999999999999999999999999999999999999999999999999998777788999999999988899999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 233 l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+++||||||.++|.+++++|+++|++| +++||+||+|.++.|++ ...++..++...+++|+++||||.+|+||+|+||
T Consensus 185 l~nP~NPTG~v~s~e~l~~l~~la~~~-~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ 262 (410)
T PRK06290 185 LNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAF 262 (410)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhcCCchhheEe
Confidence 999999999999999999999999999 99999999999998865 2345555554457889999999999999999999
Q ss_pred EEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 313 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++++++++.+.........+++.+.|.++..+|++ .+++++.++.|+++++.+.+.|+++ |+.+.+|++|||+|
T Consensus 263 ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~l~ 337 (410)
T PRK06290 263 VVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH----PEITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLY 337 (410)
T ss_pred EEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC----cHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeEEE
Confidence 999999999999888877777888999999999986 4688899999999999999999988 88888899999999
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++|+.... +. +..++.++++.|+++++|.+.||..|+ +++||+++. ++++.++.++.|++.+.++.
T Consensus 338 v~lp~~~~~---~~-~~~~~~~~~~~Ll~~~~v~~~p~~~~~--~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 338 VKAPKGTKS---GI-KFENAEEFSQYLIKEKLISTVPWDDAG--HFLRFSVTFEAKDEEEEDRILEEIKRRLSDVE 407 (410)
T ss_pred EECCCcccc---CC-CCCCHHHHHHHHHHhCCEEEECCcccc--CeEEEEEEcccccccchhHHHHHHHHHHhhcc
Confidence 999864200 00 002578899999998888889988664 799999995 77889999999998887654
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=413.46 Aligned_cols=358 Identities=40% Similarity=0.688 Sum_probs=320.2
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHHHHHhcC
Q 012124 99 LAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 99 l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~~~~l~~ 176 (470)
|+.|.|+.++|+.+.+++.+++.+. .++|++..|.++|+++|++.++..+|....+ ++|+||+|+.++|..++..+++
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~ 115 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN 115 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC
Confidence 9999999999999999999999884 7899999999999999999999988876666 5799999999999999999999
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCc------CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTR------ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~------~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+||+|+|.+|.|..|...++.+|..++.++.. ..++|.+|.+.++.++++++|+|++|+||||||.++|.++++
T Consensus 116 ~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe 195 (420)
T KOG0257|consen 116 PGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELE 195 (420)
T ss_pred CCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHH
Confidence 99999999999999999999999999999998 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++|++| |++||.||+|..+.|++..+..+.+++++++++|.++||||++|+.|||+||+++|+.++..+..+....
T Consensus 196 ~ia~l~~k~-~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~ 274 (420)
T KOG0257|consen 196 RIAELCKKH-GLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNF 274 (420)
T ss_pred HHHHHHHHC-CEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhcc
Confidence 999999999 9999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhcCCC----C-hHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc-CCccc
Q 012124 331 TSGASSISQKAGVAALGLGYA----G-GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAE 404 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~----~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~ 404 (470)
.+.+++..|.|.+.++..+.. . ..+..++.+.|+++|+.|.+.|.++ |+++..|++++|+|++++... .+-.+
T Consensus 275 ~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~ 353 (420)
T KOG0257|consen 275 VFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFE 353 (420)
T ss_pred ccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEeccccccCCcch
Confidence 999999999999988876431 0 1456679999999999999999999 999999999999999998110 00001
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC-------CcEEEEeecCHHHHHHHHHHHH
Q 012124 405 GFGKIENSESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 405 ~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~-------~~iRls~~~~~~~i~~~l~~l~ 458 (470)
......++..++..++++.|+.+.|++.|+.+ +.+|+++..+++.++.++++|+
T Consensus 354 ~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 354 EILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLK 414 (420)
T ss_pred hhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 11111245678899999999999999999965 3677888888899999999988
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=435.67 Aligned_cols=367 Identities=26% Similarity=0.454 Sum_probs=315.3
Q ss_pred ccCCchHHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCC
Q 012124 73 AVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 151 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~ 151 (470)
..+.+....+...+.+.. ..|+++++|+.|+|++.+|+.+.+++.+.+. ....|+++.|.++||+++++|+.+.+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~ 84 (393)
T TIGR03538 6 RLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLP 84 (393)
T ss_pred hCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCc
Confidence 344445555555554443 3678999999999999999999999998775 57889999999999999999999888876
Q ss_pred --CCCC-cEEEecChHHHHHHHHHHhcCCCCe--EEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 152 --YTPD-QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 152 --~~~~-~i~it~g~~~al~~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
++++ +|++|+|+++++.+++.++++|||. |++++|+|+.|...++..|++++.++++.++++.+|++.+++++.+
T Consensus 85 ~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (393)
T TIGR03538 85 TGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR 164 (393)
T ss_pred ccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh
Confidence 6775 8999999999999999999999986 9999999999999999999999999998777788999999998877
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-Ccccc-cc---cC-CCCCceEEEeccC
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSF-AS---LP-GMWERTLTVNGFS 300 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~-~~---~~-~~~~~~i~i~S~s 300 (470)
++|++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ...++ .. .. ...+++|+++|||
T Consensus 165 ~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~S 243 (393)
T TIGR03538 165 RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQY-GFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLS 243 (393)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecch
Confidence 899999999999999999999999999999999 999999999999887642 22222 11 11 1257899999999
Q ss_pred cccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
|.++++|+|+||+++++++++.+.+.......+.+.+.|.++...+.. ++++++.++.|+++++.+.+.|++. +
T Consensus 244 K~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~--~ 317 (393)
T TIGR03538 244 KRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV--L 317 (393)
T ss_pred hhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh--C
Confidence 999899999999999999999998887766677899999998888863 6789999999999999999999875 4
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASLTTLQA 452 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------~~~iRls~~~~~~~i~~ 452 (470)
.+..|.+|+|+|+++| . +..++++.|++++||.+.||..|+. .+++||+++.+++++++
T Consensus 318 ~~~~p~gg~f~~~~~~-~------------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~ 384 (393)
T TIGR03538 318 DLELPDAGFYLWPKVP-G------------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVE 384 (393)
T ss_pred cccCCCeeEEEEEECC-C------------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHH
Confidence 5567899999999998 2 5678998888777999999998852 36899999998899999
Q ss_pred HHHHHHHH
Q 012124 453 AVERIKKG 460 (470)
Q Consensus 453 ~l~~l~~~ 460 (470)
++++|+++
T Consensus 385 ~l~~l~~~ 392 (393)
T TIGR03538 385 AAERIRSF 392 (393)
T ss_pred HHHHHHHh
Confidence 99999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=437.25 Aligned_cols=364 Identities=26% Similarity=0.454 Sum_probs=315.8
Q ss_pred hcCCCeEEccCCCCC----CCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHc------CCCCCCCcEEE
Q 012124 91 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN------GLSYTPDQILV 159 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~------g~~~~~~~i~i 159 (470)
..++++|+|+.|.|+ +.+++.+.+++.+.+.. ....|+++.|.++||++|++|+.+.+ |..+++++|++
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~i 109 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVL 109 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEE
Confidence 367799999999997 45688899999888775 35789889999999999999998754 46688999999
Q ss_pred ecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC
Q 012124 160 SNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239 (470)
Q Consensus 160 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP 239 (470)
|+|+++++.+++.+++++||+|++++|+|+.+...++..|++++.++++.++++++|++.+++++++++++|++++||||
T Consensus 110 t~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NP 189 (412)
T PTZ00433 110 CSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNP 189 (412)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999987667889999999999889999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc--C-
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--P- 316 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~--~- 316 (470)
||.+++.+++++|+++|+++ |++||+||+|.++.|++...+++..++. ..++|+++||||.+|+||+|+||+++ |
T Consensus 190 tG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~ 267 (412)
T PTZ00433 190 CGSNFSRKHVEDIIRLCEEL-RLPLISDEIYAGMVFNGATFTSVADFDT-TVPRVILGGTAKNLVVPGWRLGWLLLVDPH 267 (412)
T ss_pred CCcccCHHHHHHHHHHHHHc-CCeEEEeccccccccCCCCccchhhccC-CCceEEEccchhhcCCCCeeEEEEEEeCCc
Confidence 99999999999999999999 9999999999999887654456666654 34689999999999889999999997 3
Q ss_pred ---HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEee
Q 012124 317 ---KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 393 (470)
Q Consensus 317 ---~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~ 393 (470)
+++++.+.+... ...+++.+.|.++..++.++ .+.|+++.++.++++++.+.+.|++..|+.+..|++|+|+|+
T Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~ 344 (412)
T PTZ00433 268 GNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNT--PQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMS 344 (412)
T ss_pred ccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEE
Confidence 457777766543 33578999999999999763 278999999999999999999999866888888999999999
Q ss_pred eccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 394 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++... ..+..+..++++.|++++||.+.||..|+.++++||+++..++++++++++|++++++.+
T Consensus 345 ~l~~~~------~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 345 RLDLEK------FRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred Eechhh------cCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 987410 000014678999988767999999999988899999999988999999999999998765
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=431.71 Aligned_cols=355 Identities=34% Similarity=0.556 Sum_probs=318.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+++|+|+.|+|++++++.+.+++.+.+.+....|+++.|.++||+++++++.+.+|+.+++++|++|+|+++++..++.
T Consensus 23 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~ 102 (382)
T PRK06108 23 REGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQ 102 (382)
T ss_pred cCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHH
Confidence 34689999999999989999999999887766779999999999999999999888988899999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
.++++||+|++++|+|+.+...++..|++++.+|++.+ ++|.+|++.+++.++++++++++++||||||.++|.+++++
T Consensus 103 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~ 182 (382)
T PRK06108 103 ALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRA 182 (382)
T ss_pred HhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999753 46779999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccC-CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
|+++|+++ +++||+||+|.++.++ +...+++..+....+++++++||||.+|++|+|+||+++++++++.+.......
T Consensus 183 l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~ 261 (382)
T PRK06108 183 ILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYN 261 (382)
T ss_pred HHHHHHHC-CcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhc
Confidence 99999999 9999999999999886 333444455544357899999999999989999999999999999998877666
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
..+++.+.|.++..+|.+ ..+++++++++++++++.+.+.|++++|+.+..|++|+|+|+++++..
T Consensus 262 ~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~----------- 327 (382)
T PRK06108 262 TSCVAQFVQRAAVAALDE---GEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVT----------- 327 (382)
T ss_pred ccCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCC-----------
Confidence 677899999999999986 367889999999999999999999888899888999999999998642
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..+++++|++++||.+.||..|+. ++++|++++.+++++++++++|+++++
T Consensus 328 ~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 328 DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 6778999888778999999998864 579999999999999999999998875
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-55 Score=432.40 Aligned_cols=356 Identities=28% Similarity=0.514 Sum_probs=315.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~ 172 (470)
.+.++|+.|.|+.+.|+.+++++.+.+......|+++.|.++||+++++++.+.+|+.++++ +|++|+|+++++.+++.
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 105 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALL 105 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHH
Confidence 46899999999988788888888888766678899999999999999999998889988998 99999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
.++++||+|++++|+|+.+...++..|++++.++++. +++++|++.+++.++++++++++++||||||.++|.+++++|
T Consensus 106 ~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i 184 (387)
T PRK08912 106 ALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALL 184 (387)
T ss_pred HhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHH
Confidence 9999999999999999999999999999999999864 357799999999998899999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|++| +++||+||+|.++.|++....++..+++..+++|+++||||.+|++|+|+||+++++++++.+........+
T Consensus 185 ~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~ 263 (387)
T PRK08912 185 AEFCQRH-DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTF 263 (387)
T ss_pred HHHHHHC-CeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999988764455665555445789999999999999999999999999999999888776667
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.++..|.++..++.. ..+++++.++.++++++.+.+.|++. |+.+.++.+|||+|+++++.- ...+.
T Consensus 264 ~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~--------~~~~~ 331 (387)
T PRK08912 264 TTPPNLQAAVAYGLGK---PDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLG--------LAEDD 331 (387)
T ss_pred cCChHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccC--------CCCCH
Confidence 7888889999888864 36888999999999999999999988 888888999999999997510 00167
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.++++.|++++||.+.||..|+. .+++||+|+.+++++++++++|++++++
T Consensus 332 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 332 VAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred HHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 88999888777999999999853 4799999999889999999999998763
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=436.46 Aligned_cols=360 Identities=28% Similarity=0.405 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHhc--CCCeEEccCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCcCcHHHHHHHHHHHHHHcCCC
Q 012124 79 TVAITDQATALAQA--GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHKLKEENGLS 151 (470)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~ 151 (470)
..++....++.... ++++++|+.|+|++++++.+.+++.+++.+ ....|+++.|.++||++|++|+.+.+|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 96 (409)
T PRK07590 17 FPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCD 96 (409)
T ss_pred HHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCc
Confidence 33444444444433 567999999999999999999999888765 45689999999999999999998888999
Q ss_pred CCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-----------EEEecCcCCCCCccCHHhH
Q 012124 152 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-----------PVILPTRISENFLLDPKVL 220 (470)
Q Consensus 152 ~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-----------~~~v~~~~~~~~~~d~~~l 220 (470)
+++++|++|+|+++++.+++ .+++|||+|++++|+|+.+...++..|.+ ++.++++.++++.+|++
T Consensus 97 ~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-- 173 (409)
T PRK07590 97 ISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP-- 173 (409)
T ss_pred CChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCc--
Confidence 99999999999999999865 55689999999999999999999999997 89999876666655543
Q ss_pred hhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 221 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 221 ~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
.+++++|++++||||||.++|.+++++|+++|++| +++||+||+|.++.+++...+++..++...+++|+++|||
T Consensus 174 ----~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfS 248 (409)
T PRK07590 174 ----EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN-GSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFS 248 (409)
T ss_pred ----ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc-CeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCc
Confidence 25789999999999999999999999999999999 9999999999999887654456666665446899999999
Q ss_pred cccccccceeeEEEcCHHHHHHH------------HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 368 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l------------~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
|.+|+||+|+||+++|+++++.+ .........+++.+.|.++..++..+ ...|++++++.|+++++
T Consensus 249 K~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~ 326 (409)
T PRK07590 249 KTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE--GKAQIKELIDYYMENAK 326 (409)
T ss_pred cccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence 99999999999999999998732 12122222357899999999988753 25789999999999999
Q ss_pred HHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecC
Q 012124 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAAS 446 (470)
Q Consensus 369 ~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~ 446 (470)
.+.+.|++. |+.+..|.+|+|+|+++++.. ++.++++.|++++||.+.||..|+. .+++||++..+
T Consensus 327 ~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~~-----------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~ 394 (409)
T PRK07590 327 IIREGLESA-GFEVYGGVNAPYIWVKTPDGM-----------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGS 394 (409)
T ss_pred HHHHHHHhc-CCceecCCcceEEEEECCCCC-----------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCC
Confidence 999999988 788888889999999998653 6778888888778999999999875 36999998778
Q ss_pred HHHHHHHHHHHHHH
Q 012124 447 LTTLQAAVERIKKG 460 (470)
Q Consensus 447 ~~~i~~~l~~l~~~ 460 (470)
++++++++++|.++
T Consensus 395 ~~~l~~~l~rl~~~ 408 (409)
T PRK07590 395 RENVLEAMERIKKA 408 (409)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999999875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-55 Score=431.22 Aligned_cols=351 Identities=28% Similarity=0.505 Sum_probs=309.3
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 171 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~~ 171 (470)
..++|+|+.|.|++++++.+.+++.+.+......|+++.|.++||+++++++++.+|+++++ ++|++|+|+++++..++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 28 QHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred hCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 35789999999999888999999988877666889999999999999999999988987765 68999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++++|||+|++++|+|..+...++..|++++.++++. +++.+|++.|++++++++++|++++||||||.++|.+++++
T Consensus 108 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~ 186 (384)
T PRK12414 108 SALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLAR 186 (384)
T ss_pred HHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999864 35779999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.+|+||+|+||+++++++++.+.+......
T Consensus 187 i~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~ 265 (384)
T PRK12414 187 LAQLTRNT-DIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMV 265 (384)
T ss_pred HHHHHHHC-CeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhhee
Confidence 99999999 99999999999999876545556665544578999999999999999999999999999999998887777
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
++++.+.|.++..+|.++ .+..+.++.|+++++.+.+.|++. |+.+.++.+|||+|+++++... .+
T Consensus 266 ~~~s~~~q~a~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~---------~~ 331 (384)
T PRK12414 266 FSADTPMQHAFAEALAEP----ASYLGLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD---------ES 331 (384)
T ss_pred cCCCcHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC---------CC
Confidence 889999999999999863 234467889999999999999988 7888889999999998874210 14
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+.+++..+++++||.+.||..|+. .+++||+++.+++++++++++|.+
T Consensus 332 ~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 332 DSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 567776677777999999998853 468999999999999999999974
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=430.93 Aligned_cols=389 Identities=51% Similarity=0.821 Sum_probs=342.5
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++..+.+.+...+..........+.++++|+.|+|++++++.+.+++.+.+.+....|++..|..+||+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 83 (393)
T PRK05764 4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKR 83 (393)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHH
Confidence 56677777788877777777766677788999999999998889999999998876667799999999999999999998
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|..+++++|++|+|+++++..++.+++++||.|++++|+|..+..+++..|++++.++++.++++.+|++.+++.+++
T Consensus 84 ~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (393)
T PRK05764 84 DNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP 163 (393)
T ss_pred HhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc
Confidence 88887889999999999999999999999999999999999999999999999999999998667788999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc-CCCCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~sK~~~~ 305 (470)
+++++++++|+||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..+ .+..+++++++||||.+++
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 242 (393)
T PRK05764 164 KTKALILNSPSNPTGAVYSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM 242 (393)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccC
Confidence 899999999999999999999999999999999 99999999999998865444455554 2235789999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+.........+++.+.|.++...|+. ..+++++.++.++++++.+.+.|++++|+.+..|
T Consensus 243 ~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 319 (393)
T PRK05764 243 TGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG---PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKP 319 (393)
T ss_pred ccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence 9999999999999999998888777778999999999999973 3688999999999999999999999888988889
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+|+|+|++++..... . ..++.++.+.|++++||.+.||..|+.++++|++++.+++++++++++|.+++++.+
T Consensus 320 ~g~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~~~ 393 (393)
T PRK05764 320 EGAFYVFPNVSKLLGK--S----ITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESLK 393 (393)
T ss_pred CcceEEEEeccccccc--c----cCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhC
Confidence 9999999999764210 0 003578888888778999999999988899999999999999999999999987653
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=431.87 Aligned_cols=374 Identities=23% Similarity=0.393 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCC
Q 012124 79 TVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
+..+..........++++++|+.|+|+ +.+++.+.+++.+.+... ...|++..|..+||+++++++.+ ++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~ 94 (401)
T TIGR01264 16 IRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIE 94 (401)
T ss_pred HHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCC
Confidence 344444555555567789999999995 667888999998887754 46799999999999999999986 466788
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
+++|++|+|+++++.+++.+++++||+|++++|+|+.+...++..|++++.++++.++++++|++.+++.++++++++++
T Consensus 95 ~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~ 174 (401)
T TIGR01264 95 ADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIV 174 (401)
T ss_pred HHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999876667889999999999888999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
++||||||.+++.+++++|+++|+++ +++||+||+|.+|.|++....++..+++ ..++|+++||||.|++||+|+||+
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~i 252 (401)
T TIGR01264 175 NNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATFEPLASLSS-TVPILSCGGLAKRWLVPGWRLGWI 252 (401)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEhhhhhhccCCcccccHHHcCC-CCcEEEEccCcccCCCccceEEEE
Confidence 99999999999999999999999999 9999999999999987655566666654 346999999999999999999999
Q ss_pred EcCH------HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 314 AGPK------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 314 ~~~~------~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
++++ ++++.+..... ...+++.+.|.++..+|.++ .++++++.++.++++++.+.+.|++++|+.+..|.+
T Consensus 253 v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~ 329 (401)
T TIGR01264 253 IIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT--PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSG 329 (401)
T ss_pred EecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCe
Confidence 9874 34444444433 24567899999999999753 268999999999999999999999987888888999
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
|+|+|++++... ..+..++.++++.|++++||.+.||..|+.++++|++++.+++++++++++|+++++++
T Consensus 330 g~f~~~~~~~~~------~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 330 AMYMMVGIEMEH------FPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred eeEEEEEecccc------cCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 999999986310 00001567888888877799999999998889999999998899999999999998753
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=432.30 Aligned_cols=349 Identities=23% Similarity=0.319 Sum_probs=315.3
Q ss_pred hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 91 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
..+.++++|+.|+|++.+|+.+ +++.+++......|++..|.++||++|++++. + +++++|++|+|+++++.++
T Consensus 23 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~--~~~~~vi~t~G~~~al~~~ 96 (373)
T PRK07324 23 IAESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQ---N--VKPENILQTNGATGANFLV 96 (373)
T ss_pred cccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhc---C--CChhhEEEcCChHHHHHHH
Confidence 3567899999999998888888 88888888777899999999999999999974 2 5789999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+.+++++||+|+++.|+|+.+...++..|++++.+|++.++++.+|++.+++.+++++|++++++||||||.++|.++++
T Consensus 97 ~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~ 176 (373)
T PRK07324 97 LYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLE 176 (373)
T ss_pred HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999998777888999999999988999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++|++| |++||+||+|.++.+++. .+++.+. .+++|+++||||.+|++|+|+||+++++++++.+.+.+...
T Consensus 177 ~i~~~a~~~-~~~ii~De~y~~l~~~~~-~~s~~~~---~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~ 251 (373)
T PRK07324 177 EIVEIARSV-DAYVLSDEVYRPLDEDGS-TPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYT 251 (373)
T ss_pred HHHHHHHHC-CCEEEEEccccccccCCC-CCChhhc---cCCEEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcE
Confidence 999999999 999999999999887642 3344333 46889999999999999999999999999999999998877
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
..+++.+.|.++..+|+. .+.++++.++.++++++.+.+.|++.+++.+..|.+|+|+|+.++...
T Consensus 252 ~~~~~~~~q~~a~~~l~~---~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~~----------- 317 (373)
T PRK07324 252 MICAGVFDDMLASLALEH---RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDM----------- 317 (373)
T ss_pred EecCChHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCCC-----------
Confidence 788999999999998875 367899999999999999999998887888889999999898887542
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
++.+++++|++++||.+.||..|+.++++||+++.+++.+++++++|+++++++
T Consensus 318 ~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 318 PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSEFLREF 371 (373)
T ss_pred CHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 678899998877899999999999889999999999999999999999999764
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=429.88 Aligned_cols=352 Identities=30% Similarity=0.509 Sum_probs=315.8
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAV 171 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~ 171 (470)
+.++|+|+.|.|++++++.+.+++.+.+......|++..|.++||+++++++.+.+|..++++ +|++|+|+++++.+++
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~ 108 (386)
T PRK09082 29 EHGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAI 108 (386)
T ss_pred hCCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHH
Confidence 357899999999988888899999988876678899999999999999999998889877775 8999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
..++++||+|++++|+|+.+...++..|++++.++++.+ ++.+|++.+++.++++++++++++||||||.+++.+++++
T Consensus 109 ~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 187 (386)
T PRK09082 109 LALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPP-DFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRA 187 (386)
T ss_pred HHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcc-cccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHH
Confidence 999999999999999999999999999999999999643 5789999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
|+++|++| +++||+||+|.++.|++....++.+++...+++++++||||.+|++|+|+||+++++++++.+.+......
T Consensus 188 i~~~a~~~-~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~ 266 (386)
T PRK09082 188 LWQLIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNT 266 (386)
T ss_pred HHHHHHHC-CEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhc
Confidence 99999999 99999999999999876555666666655689999999999999999999999999999999999887777
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
++++.+.|.++..++.. .+++++++++.|+++++.+.+.|++. |+.+.++.+|+|+|+++|+..+ .+
T Consensus 267 ~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~---------~~ 333 (386)
T PRK09082 267 FTVNTPAQLALADYLRA---EPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQLVDYSAISD---------LD 333 (386)
T ss_pred CCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEEEeccccCC---------CC
Confidence 88999999999999974 37889999999999999999999986 8888889999999999974100 16
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
..++++.|++++||.+.||+.|+. .+++|++++.+++++++++++|++
T Consensus 334 ~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 334 DVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 788999888888999999998853 368999999988999999999975
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-54 Score=425.82 Aligned_cols=355 Identities=32% Similarity=0.584 Sum_probs=314.4
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-CCcEEEecChHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYT-PDQILVSNGAKQSILQA 170 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-~~~i~it~g~~~al~~~ 170 (470)
..+.++|+.|.|++++|+.+.+++.+.+.. ....|.+..|.+++|+++++++.+.+|+.++ +++|++|+|+++++..+
T Consensus 26 ~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~ 105 (389)
T PRK05957 26 NPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA 105 (389)
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence 356899999999988899999999888754 3467999999999999999999988898777 78999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+..++++||+|++++|+|+.+...++..|++++.++.+ +++++|+|.+++++++++++|++++||||||.++|.++++
T Consensus 106 ~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~ 183 (389)
T PRK05957 106 ILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLR 183 (389)
T ss_pred HHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHH
Confidence 99999999999999999999998889999999999985 4567999999999988999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++|+++ |++||+||+|.++.|++....++..+.+..+++|+++||||.+|++|+|+||+++++++++++.......
T Consensus 184 ~i~~~a~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~ 262 (389)
T PRK05957 184 AVNQICAEH-GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTI 262 (389)
T ss_pred HHHHHHHHc-CcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhc
Confidence 999999999 9999999999999887543334444444457999999999999999999999999999999999888777
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-eecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
..+++.+.|.++..+|.+ ...++++.++.++++++.+.+.|++++++ .+.+|.+|+|+|++++...
T Consensus 263 ~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~---------- 329 (389)
T PRK05957 263 LICPPVVSQYAALGALQV---GKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDL---------- 329 (389)
T ss_pred ccCCCcHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCC----------
Confidence 778899999999999986 35678888888999999999999988774 7778899999999997643
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
++.++++.|++++||.+.||..|+. ++++||+++. +++++++++++|.+.++++
T Consensus 330 -~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 330 -NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred -ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 7889999998777999999999875 4699999987 8899999999999998865
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-54 Score=426.73 Aligned_cols=377 Identities=25% Similarity=0.406 Sum_probs=328.1
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++.....+....++.+...+....+++.|+|+.|+|+..+++.+.+++.+.+.. ....|++..|.++||+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 82 (386)
T PRK07550 3 NPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSR 82 (386)
T ss_pred chhhhhcCChHHHHHHHHHHHHhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 3445555666777777777777777889999999999988888899998887754 356798899999999999999999
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|..+++++|++|+|+++++.+++.+++++||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++++++
T Consensus 83 ~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~ 162 (386)
T PRK07550 83 LYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP 162 (386)
T ss_pred HhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc
Confidence 88988899999999999999999999999999999999999999999999999999999998666778899999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++++++++||||||.++|.+++++|+++|+++ +++||+||+|.++.++.....++.......+++++++||||.+|++
T Consensus 163 ~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~-~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 241 (386)
T PRK07550 163 RTRAIALVTPNNPTGVVYPPELLHELYDLARRH-GIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALT 241 (386)
T ss_pred cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCc
Confidence 999999999999999999999999999999999 9999999999998765433333333322246899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+.........+++.+.|.++..++.. .++|+++.++.++++++.+.+.|.+++++.+. +.
T Consensus 242 G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~ 317 (386)
T PRK07550 242 GHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAEIARRRDAFRAVFARLPGWELL-AS 317 (386)
T ss_pred ccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHhCCCceeC-CC
Confidence 999999999999999999888777888999999999999975 37899999999999999999999887666553 67
Q ss_pred ceEEEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 387 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
+|+|+|++++. .. ++.+++++|++++||.+.||..|+. ++++||+++. +++++++++++|+++
T Consensus 318 g~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 318 GAYFAYVRHPFPDR-----------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred ceEEEEecCCCCCC-----------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 89999999975 32 7889999888778999999999964 5699999997 889999999999875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-54 Score=424.93 Aligned_cols=354 Identities=39% Similarity=0.664 Sum_probs=315.1
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~ 170 (470)
..+++++|+.|.|++++++.+.+++.+.+......|++..|.++||+++++++.+.+|+.++++ +|++|+|+++++.++
T Consensus 26 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~ 105 (387)
T PRK07683 26 NYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIA 105 (387)
T ss_pred hcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 3457899999999987788899999999887678898899999999999999998889988998 999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+..++++||+|++++|+|+++...++..|++++.++.+. +++.+|.+.+++.++++++++++++||||||.++|.++++
T Consensus 106 ~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~ 184 (387)
T PRK07683 106 FRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQ 184 (387)
T ss_pred HHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHH
Confidence 999999999999999999999999999999999999874 4677889999999988899999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++|+++ +++||+||+|.++.|++. ..++.++.+..+++|+++||||.+|+||+|+||+++++++++.+.+.....
T Consensus 185 ~l~~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~ 262 (387)
T PRK07683 185 DIADVLKDK-NIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYN 262 (387)
T ss_pred HHHHHHHHc-CeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhc
Confidence 999999999 999999999999988653 345566543457899999999999999999999999999999998876655
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC-ccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST-YYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~ 409 (470)
..+++.+.|.++..+|.++ ..++++.++.++++++.+.+.|++. |+.+..|++|+|+|+.++. ..
T Consensus 263 ~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~---------- 328 (387)
T PRK07683 263 VTCASSISQYAALEALTAG---KDDAKMMRHQYKKRRDYVYNRLISM-GLDVEKPTGAFYLFPSIGHFTM---------- 328 (387)
T ss_pred cCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCeeEEEEEecccCCC----------
Confidence 5677889999999999873 5688899999999999999999887 7888889999999999875 21
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
++.+++..+++++||.+.||..|+. ++++||+++.+++++++++++|.+++++
T Consensus 329 -~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 329 -SSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred -CHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 5677887777778999999999864 4799999999999999999999998864
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=425.33 Aligned_cols=369 Identities=32% Similarity=0.545 Sum_probs=316.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC
Q 012124 79 TVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155 (470)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~ 155 (470)
...+.....+....|.++|+|+.|.| ++.+++.+.+++.+.+......|+++.|.++||+++++|+.+.+|+.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~ 94 (398)
T PRK08363 15 IRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPD 94 (398)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChh
Confidence 34445555555567889999999999 677888999999988876667798899999999999999998889889999
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEe-cCcCCCCCccCHHhHhhhccCCceEEEEc
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFLLDPKVLESKLTEKSRLLILC 234 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v-~~~~~~~~~~d~~~l~~~l~~~~~~i~l~ 234 (470)
+|++|+|+++++.+++.+++++||+|++++|+|+.+...++..|.+++.+ +.+ ++++.+|++.+++.+++++++++++
T Consensus 95 ~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~-~~~~~~d~~~l~~~~~~~~~~v~l~ 173 (398)
T PRK08363 95 DVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIE-EEGWQPDIDDIRKKITEKTKAIAVI 173 (398)
T ss_pred hEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEecccc-ccCCcCCHHHHHhhCCcceEEEEEE
Confidence 99999999999999999999999999999999999999999999999888 443 3567789999999998889999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
+||||||.+++.+++++|+++|+++ +++||+||+|.++.|++. ..++..++. ..++|+++||||.+++||+|+||++
T Consensus 174 ~p~NPtG~~~~~~~~~~l~~~a~~~-~~~li~Deay~~~~~~~~-~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~~~ 250 (398)
T PRK08363 174 NPNNPTGALYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYEGK-HVSPGSLTK-DVPVIVMNGLSKVYFATGWRLGYIY 250 (398)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEhhhhhhhccCCc-ccCHHHcCc-CCcEEEEecchhccCCccceEEEEE
Confidence 9999999999999999999999999 999999999999888653 344555654 4689999999999888999999999
Q ss_pred c--CHHHHHHHHHHhhh---ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceE
Q 012124 315 G--PKHFVAACNKIQSQ---FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 389 (470)
Q Consensus 315 ~--~~~~~~~l~~~~~~---~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~ 389 (470)
+ ++++++.+...... ..++++.+.|.++..+|.. ..+|+++.++.++++++.+.+.|.+++++.+..|.+||
T Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~ 327 (398)
T PRK08363 251 FVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG---PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAF 327 (398)
T ss_pred EeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEE
Confidence 7 77777766544321 2357899999999999975 37899999999999999999999988888888899999
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
|+|++++... ..+..+++..+++++||.+.||..|+. ++++||+++.+++++++++++|++++++
T Consensus 328 ~~~~~l~~~~---------~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 328 YIFPRIEEGP---------WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EEEEEeccCC---------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 9999987520 014567766666777999999999974 4799999988889999999999998875
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=423.19 Aligned_cols=355 Identities=36% Similarity=0.628 Sum_probs=312.4
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~~~ 172 (470)
+++|+|+.|.|++.+++.+.+++.+.+......|.+..|.++||+++++++.+.+|+.+++ ++|++|+|+++++.+++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 109 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLT 109 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 5789999999998888889999998887656679999999999999999999888987775 799999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
+++++||+|++++|+|+++...++..|.+++.++.+. +++.+|++.+++++++ +++++++++||||||.+++.+++
T Consensus 110 ~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~ 188 (391)
T PRK07309 110 AILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQI 188 (391)
T ss_pred HhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHH
Confidence 9999999999999999999999999999999999863 4577999999998853 68999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 329 (470)
++|+++|++| +++||+||+|.++.|++....++..++ .+++|+++||||.+|++|+|+||+++++++++.+......
T Consensus 189 ~~l~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~ 265 (391)
T PRK07309 189 KALADVLKKY-DIFVISDEVYSELTYTGEPHVSIAEYL--PDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQY 265 (391)
T ss_pred HHHHHHHHHc-CcEEEEEccccceeeCCCCCCCHHHhc--cCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhh
Confidence 9999999999 999999999999998655455555554 3789999999999999999999999999999999887665
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
...+++.+.|.++..+|+++ ..+....++.|+++++.+.+.|++. |+.+..|.+|+|+|+++|+...
T Consensus 266 ~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l~~~~~--------- 332 (391)
T PRK07309 266 LVTAATTMAQFAAVEALTNG---KDDALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKIPAGYN--------- 332 (391)
T ss_pred cccCCChHHHHHHHHHHhCC---hhHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEECCCCCC---------
Confidence 56678999999999999874 3345677889999999999999988 7888889999999999886421
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.++.++++++++++||.+.||..|+. +++|||+++.+.+++++++++|++++++.+
T Consensus 333 ~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 333 QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence 14678888877777999999999875 579999999988999999999999998764
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=421.74 Aligned_cols=357 Identities=23% Similarity=0.358 Sum_probs=303.2
Q ss_pred CchHHHHHHHHHHHHhc-CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC
Q 012124 76 PSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 154 (470)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~ 154 (470)
+.....+.+.......+ |.++++|+.|+|++++++.+.+++.+... ....|+++.|.++||+++++++++++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~ 83 (374)
T PRK05839 5 PYPFEKLRELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAH-LLNKYPKSAGEESLREAQRGFFKRRFKIELKE 83 (374)
T ss_pred cchHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCc
Confidence 34455555555556666 77999999999999888888888887653 46789999999999999999999988988999
Q ss_pred CcEEEecChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEE
Q 012124 155 DQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~ 232 (470)
++|++|+|+++++..++..++ ++||.|++++|+|+.|...++..|+++++++++.++++.+|++..+ + +++++++
T Consensus 84 ~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~v~ 160 (374)
T PRK05839 84 NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDLVI 160 (374)
T ss_pred ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccEEE
Confidence 999999999999999888774 5789999999999999999999999999999987777777765443 2 4689999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc-----CCCCCceEEEeccCccccccc
Q 012124 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----PGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 233 l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~-----~~~~~~~i~i~S~sK~~~~~G 307 (470)
+++||||||.++|.+++++|+++|+++ |++||+||+|.++.++. ..+++... ....+++|+++||||.|++||
T Consensus 161 i~nP~NPTG~~~s~~~l~~i~~~~~~~-~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 161 LNSPNNPTGRTLSLEELIEWVKLALKH-DFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHc-CCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 999999999999999999999999999 99999999999986543 23333322 122479999999999999999
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
+|+||+++++++++++.........+.+.+.|.++..++.. +.++++.++.++++++.+.+.| ++. .|.+
T Consensus 239 lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~g 308 (374)
T PRK05839 239 LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL----GIT--IPPA 308 (374)
T ss_pred ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc----CCC--CCCe
Confidence 99999999999999998887766678899999999888864 6788999999999999988876 333 6789
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
|+|+|++++ +..+++++|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 309 g~fi~~~~~--------------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 309 TFYVWLPVD--------------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred eEEEEEeCC--------------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 999999986 4568888888767999999988864 479999998889999999999999875
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=422.60 Aligned_cols=365 Identities=27% Similarity=0.429 Sum_probs=317.2
Q ss_pred HHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEec
Q 012124 84 DQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSN 161 (470)
Q Consensus 84 ~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~ 161 (470)
+......+.++++++|+.|+|+..+|+.+++++.+.+.. ....|+++.|.++||+++++++.+.+|+.++++ +|++|+
T Consensus 19 ~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~ 98 (395)
T PRK08175 19 ELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTI 98 (395)
T ss_pred HHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcc
Confidence 344445556788999999999988888788888777654 457899999999999999999998889988887 899999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCC
Q 012124 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSN 238 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~n 238 (470)
|+++++.+++..+++|||+|++++|+|+.+...++..|++++.++++.+++ +++.++++++ ++++++++++|||
T Consensus 99 G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~~~v~i~~p~N 175 (395)
T PRK08175 99 GSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYPKPKMMILGFPSN 175 (395)
T ss_pred CcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccCCceEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999976543 5788887775 4789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+++.+++++|+++|++| |++||+||+|.++.|++...+++..++...+++|+++||||.+|+||+|+||++++++
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~ 254 (395)
T PRK08175 176 PTAQCVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPE 254 (395)
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHH
Confidence 999999999999999999999 9999999999999887655566666654357889999999999889999999999999
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 319 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
+++.+.+.......+++.+.|.++..++.. .+.|++++++.|+++++.+.+.|+++ |+.+..|.+|+|+|+++++.
T Consensus 255 l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~ 330 (395)
T PRK08175 255 LVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEP 330 (395)
T ss_pred HHHHHHHHHhhcccCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcc
Confidence 999999888777778888899999999975 37889999999999999999999988 78888889999999999864
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+. ..++.+++++|++++||.|.||..|+. ++++||+++.+++.+++++++|++++++.
T Consensus 331 ~~--------~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 331 YA--------AMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred cC--------CCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 20 014678888888778999999998864 46999999888899999999999998754
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=420.89 Aligned_cols=372 Identities=32% Similarity=0.557 Sum_probs=320.7
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCC
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGL 150 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~ 150 (470)
+..++...+.++..... ..++++|+.|.|+.+.|+.+++++.+.+......|+++.|.++||+++++++.+.+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~ 80 (387)
T PRK07777 6 LRPFGTTIFAEMSALAV-----RTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGL 80 (387)
T ss_pred hhhcCccHHHHHHHHHh-----hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 33444444444433332 2368999999999888878888888888766778988999999999999999988898
Q ss_pred CCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhccCCc
Q 012124 151 SYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 151 ~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~ 228 (470)
+++++ +|++|+|+++++.+++.+++++||+|+++.|+|+.+...++..|.+++.++++++ +++.+|++.+++.+++++
T Consensus 81 ~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (387)
T PRK07777 81 EYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRT 160 (387)
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCccc
Confidence 88886 7999999999999999999999999999999999999999999999999999765 367799999999998899
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
++|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++....++..+++..+++|+++||||.||+||+
T Consensus 161 ~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl 239 (387)
T PRK07777 161 RALIVNSPHNPTGTVLTAAELAAIAELAVEH-DLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGW 239 (387)
T ss_pred EEEEEcCCCCCCCccCCHHHHHHHHHHHHhc-CcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCc
Confidence 9999999999999999999999999999999 999999999999988665445555555445789999999999999999
Q ss_pred eeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce
Q 012124 309 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g 388 (470)
|+||+++++++++.+........++.+.+.|.++..++.. .+.|++++++.++++++.+.+.|+++ |+++.+++++
T Consensus 240 RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~ 315 (387)
T PRK07777 240 KIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDH---EDAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGT 315 (387)
T ss_pred eeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcc
Confidence 9999999999999998877766777888899999998876 36889999999999999999999987 8888889999
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-----~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
||+|++++... ..++.+++++|++++||.|.||..|+. ++++||+++.+++++++++++|+++.
T Consensus 316 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 316 YFLCADPRPLG---------YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384 (387)
T ss_pred eEEEecccccC---------CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 99999976310 016789999998777999999998863 35899999999999999999998765
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=417.11 Aligned_cols=342 Identities=26% Similarity=0.486 Sum_probs=305.6
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHHHh
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~~l 174 (470)
+++|+.|+|++++++.+.+++.+... ....|+++.|.++||+++++|+.+.+|++++++ +|++|+|+++++..++.++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~ 80 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH
Confidence 58999999998888899999988764 467899899999999999999998889999998 9999999999999999999
Q ss_pred cCCC---CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 175 CSPG---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 175 ~~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++| |+|++++|+|+.+...++..|++++.++++.++++.+|++.++++++++++++++++||||||.+++.+++++
T Consensus 81 ~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 81 IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHH
Confidence 9887 6999999999999999999999999999976677889999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
|+++|+++ |++||+||+|.++.++. ...++..++ .+++|+++||||.+|++|+|+||+++++++++.+......+.
T Consensus 161 l~~~a~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~--~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~ 236 (350)
T TIGR03537 161 TIAMCREH-GIILCSDECYTEIYFGE-PPHSALEVG--IENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFG 236 (350)
T ss_pred HHHHHHHc-CcEEEEeccccccccCC-CCCchhhcC--cCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhc
Confidence 99999999 99999999999987754 333444443 479999999999998899999999999999999998887777
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
.+.+.+.|.++...+.. +.++++.++.++++++.+.+.|++. |+++..|.+|+|+|+++|+.. +
T Consensus 237 ~~~~~~~q~~~~~~l~~----~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~~~~-----------~ 300 (350)
T TIGR03537 237 VASPDFVQAAAKAAWSD----DNHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVPSGI-----------D 300 (350)
T ss_pred cCCCHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEECCCCC-----------C
Confidence 77888888988888764 6788899999999999999999987 888888999999999998643 6
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+.++++.|+++ ||.+.||..|+. ++++|++++.+++++++++++|++
T Consensus 301 ~~~l~~~L~~~-gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 301 AKDYALRLLEN-GIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHHHC-CEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 78899998765 999999999965 579999998788999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=421.68 Aligned_cols=376 Identities=25% Similarity=0.433 Sum_probs=319.8
Q ss_pred hHHHHHHHHHHHHhcCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCC
Q 012124 78 KTVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
++.++.+.......+|.++++|+.|.|+ +++++.+.+++.+.+... ...|++..|..++|+++++++...+++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 94 (403)
T TIGR01265 15 PIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL 94 (403)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 3445555555555567899999999985 566788999999888654 36798999999999999999998778888
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEE
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~ 232 (470)
++++|++|+|+++++.+++.++.++||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++++++++++++
T Consensus 95 ~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~ 174 (403)
T TIGR01265 95 TADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIV 174 (403)
T ss_pred CHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEE
Confidence 99999999999999999999999999999999999999999999999999999987666788999999999988899999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 233 l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+++||||||.++|.+++++|+++|+++ |++||+||+|.++.|++....++.+++. ..++|+++||||.|++||+|+||
T Consensus 175 i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~ 252 (403)
T TIGR01265 175 VINPSNPCGSVFSRDHLQKIAEVARKL-GIPIIADEIYGHMVFGDAPFIPMASFAS-IVPVLSLGGISKRWVVPGWRLGW 252 (403)
T ss_pred EecCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCCCccchhhhcc-CCcEEEEeecccccCCCcceEEE
Confidence 999999999999999999999999999 9999999999999987655566667765 46799999999999889999999
Q ss_pred EEcC--HH-----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 313 IAGP--KH-----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 313 ~~~~--~~-----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
++++ ++ +++.+..... ...+++.+.|.++..+|.++ .+.++++.++.++++++.+.+.|+.++|+.+..|
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 329 (403)
T TIGR01265 253 IIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENT--PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP 329 (403)
T ss_pred EEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 9984 22 3444444332 24568999999999999753 3689999999999999999999998878888789
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+|+|+|++++...- .+..+..++++.|++++||.+.||..|+.++++|++++.+++++++++++|++++++.
T Consensus 330 ~~g~f~~~~~~~~~~------~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~ 402 (403)
T TIGR01265 330 EGAMYLMVKLELELF------PEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEFCERH 402 (403)
T ss_pred CceeEEEEecccccc------CCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 999999999975310 0011567888888777899999999998889999999998889999999999998653
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-53 Score=420.37 Aligned_cols=379 Identities=31% Similarity=0.539 Sum_probs=322.1
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++.......+..+..........+.++++|+.|.|+.++|+.+.+++.+... ....|++..|.+++|+++++++. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~-~ 81 (397)
T PRK07568 4 SKRVLNMPASPIRKLVPYADEAKKRGIKVYHLNIGQPDIKTPEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYK-K 81 (397)
T ss_pred hhHhhhCCcchHHHHHHHHHHHHhhCCCEEEecCCCCCCCCCHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHH-H
Confidence 334444444455555444443334566799999999998888889888877653 46789999999999999999998 4
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCcc-CHHhHhhhccC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL-DPKVLESKLTE 226 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-d~~~l~~~l~~ 226 (470)
+|+.+++++|++|+|+++++.+++..++++||+|++++|+|+.+...++..|++++.++++.++++.+ +++.+++++++
T Consensus 82 ~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~ 161 (397)
T PRK07568 82 WGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP 161 (397)
T ss_pred hCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc
Confidence 78888999999999999999999999999999999999999999999999999999999875555543 68999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++....++.++++..+++++++||||.++++
T Consensus 162 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~ 240 (397)
T PRK07568 162 KTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSAC 240 (397)
T ss_pred cceEEEEECCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCC
Confidence 999999999999999999999999999999999 9999999999999887655566666655468999999999999989
Q ss_pred cceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 307 GWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 307 G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
|+|+||++++ +++++.+.+.... .++++.+.|.++..+|+. .+.|++++++.|+++++.+.+.|++++++.+..|
T Consensus 241 G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 316 (397)
T PRK07568 241 GARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDT---PESYFDEVREEYKKRRDILYEELNKIPGVVCEKP 316 (397)
T ss_pred CcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 9999999985 6888887665442 467899999999999986 3788999999999999999999998878888889
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVE 455 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~pg~~f~~-----~~~iRls~~~~~~~i~~~l~ 455 (470)
.+|+|+|+++|.. +..++++.|+++ .||.+.||..|+. ++++||+|+.++++++++++
T Consensus 317 ~g~~~~~~~l~~~------------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~ 384 (397)
T PRK07568 317 KGAFYIIAKLPVD------------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAME 384 (397)
T ss_pred CcceEEEEecCCC------------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHH
Confidence 9999999999753 677888888764 5999999998842 36999999988899999999
Q ss_pred HHHHHHHhhC
Q 012124 456 RIKKGLLTLR 465 (470)
Q Consensus 456 ~l~~~l~~~~ 465 (470)
+|+++++++.
T Consensus 385 ~l~~~l~~~~ 394 (397)
T PRK07568 385 ILKEALEKYN 394 (397)
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-54 Score=432.95 Aligned_cols=362 Identities=20% Similarity=0.332 Sum_probs=300.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCcCcHHHHHHHHHHHHHHcCC--CCCCCcEEE
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILV 159 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~l~~~~g~--~~~~~~i~i 159 (470)
.++|+|+.+++.+.. +.+.+.+.+... .....|+++.|.++||++|++|+.+.+|. .+++++|++
T Consensus 38 ~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iii 116 (468)
T PLN02450 38 SGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVL 116 (468)
T ss_pred CeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEE
Confidence 368999999987655 555555544321 12456988899999999999999987774 468999999
Q ss_pred ecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEE
Q 012124 160 SNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLI 232 (470)
Q Consensus 160 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~ 232 (470)
|+|+++++..++.++++|||.|++++|+|+.+...+. ..|+++++++++.++++.+|++.+++++.+ ++++++
T Consensus 117 t~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~ 196 (468)
T PLN02450 117 TAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVL 196 (468)
T ss_pred ccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEE
Confidence 9999999999999999999999999999999988888 589999999997677888999999988753 789999
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC--------CCCCceEEEeccCcccc
Q 012124 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP--------GMWERTLTVNGFSKAFA 304 (470)
Q Consensus 233 l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~--------~~~~~~i~i~S~sK~~~ 304 (470)
+++||||||.++|.+++++|+++|++| +++||+||+|+++.|++....++.... ...+++++++||||.++
T Consensus 197 l~nP~NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~ 275 (468)
T PLN02450 197 ITNPSNPLGTTTTRTELNLLVDFITAK-NIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG 275 (468)
T ss_pred EecCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCC
Confidence 999999999999999999999999999 999999999999888764443433221 12579999999999999
Q ss_pred cccceeeEEEcCHH-HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 305 MTGWRLGYIAGPKH-FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 305 ~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
++|+|+||++++++ +++.+.+... ..+++.+.|.++..+|+++.+...++++.++.|+++++.+.+.|+++ |+.+.
T Consensus 276 l~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~ 352 (468)
T PLN02450 276 LPGFRVGAIYSNDEMVVSAATKMSS--FGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCL 352 (468)
T ss_pred CCCccEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccc
Confidence 99999999999854 5666665532 23478999999999999865523578899999999999999999998 88888
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
.+.+|+|+|++++..... ....+..+++++|++++||.+.||..|+. ++||||+|+. +++++++++++|+++
T Consensus 353 ~~~~g~flwi~l~~~~~~-----~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~ 427 (468)
T PLN02450 353 KSNAGLFCWVDMRHLLKS-----NTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSF 427 (468)
T ss_pred CCCceEEEEEEchHhcCc-----CCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHH
Confidence 899999999999754210 00113456888888878999999999874 5899999997 899999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
+++..
T Consensus 428 l~~~~ 432 (468)
T PLN02450 428 VESDS 432 (468)
T ss_pred HHhcc
Confidence 87544
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=418.79 Aligned_cols=384 Identities=28% Similarity=0.441 Sum_probs=311.2
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++..+.+.....+.+........|+++++|+.|+| ++++++.+.+++.+.+.. ...|+++.|.++||+++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~ 87 (404)
T PRK09265 9 KLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT-AQGYSDSKGLFSARKAIMQYYQQ 87 (404)
T ss_pred HHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHHHhc
Confidence 34455555555666666767677889999999998 455678888888877653 57899999999999999999976
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
..+..+++++|++|+|+++++.+++.+++++||+|++++|+|+.+...++..|++++.++++.++++.+|++.+++++++
T Consensus 88 ~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~ 167 (404)
T PRK09265 88 KGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITP 167 (404)
T ss_pred cCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccc
Confidence 44336889999999999999999999999999999999999999999999999999999887666778999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.|++....++..+++ ..++|+++||||.+++|
T Consensus 168 ~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 168 RTKAIVIINPNNPTGAVYSKELLEEIVEIARQH-NLIIFADEIYDKILYDGAVHISIASLAP-DLLCVTFNGLSKAYRVA 245 (404)
T ss_pred cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhhhccCCCCCcCCHHHcCC-CceEEEEecchhhccCc
Confidence 999999999999999999999999999999999 9999999999999887655566666654 35799999999999889
Q ss_pred cceeeEEEc--CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 307 GWRLGYIAG--PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 307 G~r~G~~~~--~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
|+|+||+++ +.+ +++.+... .....+++.+.|.++..+|.+....+.+++ .++.+.++++.+.+.|++++|+
T Consensus 246 GlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~r~~~~~~L~~~~~~ 323 (404)
T PRK09265 246 GFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELIL-PGGRLYEQRDRAWELLNAIPGV 323 (404)
T ss_pred ccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHH-HHHHHHHHHHHHHHHHhcCCCC
Confidence 999999996 444 33333322 234567889999999999964211012222 2346777899999999888888
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~ 458 (470)
.+..|.+|+|+|++++... ....++.+++..+++++||.+.||..|+. ++++|++++.+++++++++++|+
T Consensus 324 ~~~~p~~g~~l~~~~~~~~-------~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~ 396 (404)
T PRK09265 324 SCVKPKGALYAFPKLDPKV-------YPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIG 396 (404)
T ss_pred cccCCCcceEEEEEecccc-------cCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHH
Confidence 8889999999999997531 00013445455566677999999999963 57999999779999999999999
Q ss_pred HHHHhhC
Q 012124 459 KGLLTLR 465 (470)
Q Consensus 459 ~~l~~~~ 465 (470)
+++++++
T Consensus 397 ~~l~~~~ 403 (404)
T PRK09265 397 RFLSGYR 403 (404)
T ss_pred HHHHHhc
Confidence 9998654
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=429.38 Aligned_cols=366 Identities=20% Similarity=0.314 Sum_probs=299.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
+++|+|+.+.+.++. .+++++.+.+.. ....|+++.|.++||++|++|+.+++|+++++++|++|+|+++++.+
T Consensus 129 p~~i~~~~~~~~fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~ 206 (534)
T PLN02231 129 PSLLDKSETHGLFSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHM 206 (534)
T ss_pred CccCCCCCccccCCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHH
Confidence 467888876666644 555555556653 25679999999999999999999888999999999999999999999
Q ss_pred HHHHhcC-CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCccc
Q 012124 170 AVLAVCS-PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGS 242 (470)
Q Consensus 170 ~~~~l~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~ 242 (470)
++++++. +||.|+++.|+|+.|...++..|+++++++++++++|++|+++|++++++ ++|++++++||||||.
T Consensus 207 ~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~ 286 (534)
T PLN02231 207 MMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQ 286 (534)
T ss_pred HHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCc
Confidence 9999984 89999999999999999999999999999998777899999999998854 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccC-CCCcccccccCC------CCCceEEEeccCccc-ccccceeeEEE
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPG------MWERTLTVNGFSKAF-AMTGWRLGYIA 314 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~-~~~~~~~~~~~~------~~~~~i~i~S~sK~~-~~~G~r~G~~~ 314 (470)
++|.+++++|+++|++| +++||+||+|.++.|+ +....++.+++. ...++|+++||||.+ |++|+|+||++
T Consensus 287 vls~e~l~~Iv~~a~~~-~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~ 365 (534)
T PLN02231 287 VLAEENQRDIVEFCKQE-GLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYME 365 (534)
T ss_pred CCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEE
Confidence 99999999999999999 9999999999999995 334455554421 123699999999976 78999999998
Q ss_pred c---CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcC-----CCChH---HHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 315 G---PKHFVAACNKIQSQFTSGASSISQKAGVAALGLG-----YAGGE---VVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 315 ~---~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-----~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
+ ++++++.+.+... ...+++.+.|.++..+++.. .+ +. +.+++++.|+++++++.+.|++++|+.+.
T Consensus 366 ~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~ 443 (534)
T PLN02231 366 VTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRAKTLEDALNSLEGVTCN 443 (534)
T ss_pred EecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 6 6889999988765 45678889999988888642 22 33 34456889999999999999999899999
Q ss_pred CCCceEEEeeec--cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 384 ~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~ 458 (470)
.|+||||+|+++ |... .......+..++..++.+|+++.||.+.||+.|+. ..+||+++..++++++++++||+
T Consensus 444 ~p~Ggfylw~~l~lp~~~-~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~ 522 (534)
T PLN02231 444 KAEGAMYLFPRIHLPQKA-IKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLT 522 (534)
T ss_pred CCCeeeEEeccccCcHHH-HHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHH
Confidence 999999999554 4210 00000000113445678888888999999999985 23699999889999999999999
Q ss_pred HHHHhhC
Q 012124 459 KGLLTLR 465 (470)
Q Consensus 459 ~~l~~~~ 465 (470)
+++++..
T Consensus 523 ~~~~~~~ 529 (534)
T PLN02231 523 EFHKSFM 529 (534)
T ss_pred HHHHHHH
Confidence 9887653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=426.86 Aligned_cols=363 Identities=21% Similarity=0.365 Sum_probs=298.4
Q ss_pred CeEEccCCCCCC--CC-hHHHHHHHHHHHH--------cCCCCCCCCcCcHHHHHHHHHHHHHHcC--CCCCCCcEEEec
Q 012124 95 SVIRLAAGEPDF--DT-PVLIAEAGINAIR--------EGFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSN 161 (470)
Q Consensus 95 ~~i~l~~g~~~~--~~-~~~~~~a~~~~~~--------~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~it~ 161 (470)
++|+|+.+++.+ +. ++.+++.....+. .....|++..|.++||++|++|+.+.+| +++++++|++|+
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 689999999876 33 4444444333211 1235688899999999999999998888 668999999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCcCCCCCccCHHhHhhhc------cCCceEEEEc
Q 012124 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILC 234 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l------~~~~~~i~l~ 234 (470)
|+++++++++.++++|||.|++++|+|+.+...+. ..|+++++++++.++++++|++.+++++ ..++|+|+++
T Consensus 127 Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~ 206 (496)
T PLN02376 127 GATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILT 206 (496)
T ss_pred chHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEc
Confidence 99999999999999999999999999999998887 5899999999987677889999997653 2478999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-------CCceEEEeccCccccccc
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-------~~~~i~i~S~sK~~~~~G 307 (470)
+||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++.++... .+++++++||||.||+||
T Consensus 207 nP~NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG 285 (496)
T PLN02376 207 NPSNPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG 285 (496)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc
Confidence 9999999999999999999999999 99999999999998877656666555211 146788999999999999
Q ss_pred ceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||++++ +.+.+.+...... ...+.+.|.++..+|.++.+.++++++.++.|+++++.+.+.|++. |+.+..+.
T Consensus 286 lRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~ 362 (496)
T PLN02376 286 FRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSN 362 (496)
T ss_pred ceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 999999985 5555555544432 3478999999999998765435678888999999999999999987 88888899
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~l~~ 463 (470)
+|+|+|+++++.... ....++..++++.|+++.||.+.||..|+. ++||||+|+. +++++++++++|++++.+
T Consensus 363 aG~flwi~l~~~~~~----~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 363 AGLFAWMDLRHLLRD----RNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred ceEEEEEEchhhhcc----CCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999764210 000113467888888888999999999964 5899999997 889999999999999975
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
.+
T Consensus 439 ~~ 440 (496)
T PLN02376 439 NK 440 (496)
T ss_pred hh
Confidence 44
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=417.70 Aligned_cols=364 Identities=21% Similarity=0.372 Sum_probs=304.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCcCcHHHHHHHHHHHHHHcC--CCCCCCcEE
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQIL 158 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~ 158 (470)
+.++|+|+..++.+ ..+.+.+.+.+... .....|.+..|.++||+++|+++.+.+| .++++++|+
T Consensus 46 p~g~i~l~~aeN~l-~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Iv 124 (447)
T PLN02607 46 PSGVIQMGLAENQV-SFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIV 124 (447)
T ss_pred CCceEEEechhhhh-hHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeE
Confidence 34689999998765 34555555555432 1234588889999999999999998877 358999999
Q ss_pred EecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEE
Q 012124 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLL 231 (470)
Q Consensus 159 it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i 231 (470)
+|+|+++++++++.++++|||.|++++|+|+++...+. ..|+++++|+++.+++|.+|++.+++++++ ++|++
T Consensus 125 it~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~l 204 (447)
T PLN02607 125 LTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGV 204 (447)
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEE
Confidence 99999999999999999999999999999999988776 589999999998777788999999998853 78999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC------CCCCceEEEeccCccccc
Q 012124 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 232 ~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~------~~~~~~i~i~S~sK~~~~ 305 (470)
++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++.++. +..+++++++||||.||+
T Consensus 205 ll~nP~NPtG~~~s~e~l~~l~~~~~~~-~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~ 283 (447)
T PLN02607 205 LITNPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGL 283 (447)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCC
Confidence 9999999999999999999999999999 999999999999888765555655431 114789999999999999
Q ss_pred ccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 306 TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 306 ~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
+|+|+||+++ +++++..+...... .++|.+.|.++..+|+++.+.+.++++.+++++++++.+.+.|++. |+.+..
T Consensus 284 ~GlRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~ 360 (447)
T PLN02607 284 PGFRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLK 360 (447)
T ss_pred CcceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccc
Confidence 9999999998 67777777665432 2468889999999999866545788899999999999999999987 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
+.+|+|+|+++++..... ......+++++|++++||.+.||..|+. ++|+|++|+. ++++++++++||.+++
T Consensus 361 ~~ag~fvw~~L~~~~~~~-----~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l 435 (447)
T PLN02607 361 GNAGLFCWMNLSPLLETP-----TREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFM 435 (447)
T ss_pred CCeeEEEEEEchHhhcCC-----CchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 999999999997542100 0113457888888878999999999864 6899999997 8999999999999999
Q ss_pred HhhCC
Q 012124 462 LTLRP 466 (470)
Q Consensus 462 ~~~~~ 466 (470)
++.+.
T Consensus 436 ~~~~~ 440 (447)
T PLN02607 436 DRRKT 440 (447)
T ss_pred HHHHh
Confidence 87764
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=408.93 Aligned_cols=357 Identities=28% Similarity=0.404 Sum_probs=293.2
Q ss_pred HHHHHHHHHHHh--cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-----CCCCCCCcCcHHHHHHHHHHHHHHcCCCC
Q 012124 80 VAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
..+......... .+.++++|+.|+|++++++.+.+++.+.+.+. ...|++..|.++||+++++++.+. + +
T Consensus 17 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~--~ 93 (402)
T TIGR03542 17 SEINRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-R--I 93 (402)
T ss_pred HHHHHHHHHHHhccCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-C--C
Confidence 334444444433 35689999999999988999999998887652 356988999999999999986431 2 7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCC-----------EEEEecCcCCCCCccCHHhHh
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA-----------TPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~~~~~~~~d~~~l~ 221 (470)
++++|++|+|+++++..++ .++.+||+|++++|+|+.+...++..|+ +++.++.+.++++.+|++.
T Consensus 94 ~~d~I~it~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 170 (402)
T TIGR03542 94 DPEEIFISDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-- 170 (402)
T ss_pred CHHHEEECCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCccc--
Confidence 8899999999999999864 5568999999999999999999999999 9999998765565555432
Q ss_pred hhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 222 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 222 ~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
.+++++|++++||||||.++|.+++++|+++|++| +++||+||+|.+|.+++....++..++...+++|+++||||
T Consensus 171 ---~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK 246 (402)
T TIGR03542 171 ---EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSK 246 (402)
T ss_pred ---cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcc
Confidence 14789999999999999999999999999999999 99999999999998765434455566554578999999999
Q ss_pred ccccccceeeEEEcCHHHH--------HHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 302 AFAMTGWRLGYIAGPKHFV--------AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~--------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
.+|+||+|+||++++++++ ..+.........+++.+.|.++..++.++. ..+.++.++.|+++++.+.+.
T Consensus 247 ~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 324 (402)
T TIGR03542 247 TAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEG--LQPILEAISYYMENARILRKA 324 (402)
T ss_pred ccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcc--hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 222222222333578899999989887643 346777888999999999999
Q ss_pred hccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHH
Q 012124 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQ 451 (470)
Q Consensus 374 L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~ 451 (470)
|++. |+++..+.+|+|+|+++|+.+ ++.++++.|++++||.+.||..|+. ++++||+++.++++++
T Consensus 325 L~~~-~~~~~~~~~~~f~~v~l~~~~-----------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~ 392 (402)
T TIGR03542 325 LEAA-GFKVYGGEHAPYLWVKTPEGI-----------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIV 392 (402)
T ss_pred HHhc-CceecCCCceeEEEEECCCCC-----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHH
Confidence 9987 788877889999999998653 6788999988777999999999875 4799999877889999
Q ss_pred HHHHHHHHH
Q 012124 452 AAVERIKKG 460 (470)
Q Consensus 452 ~~l~~l~~~ 460 (470)
+++++|+++
T Consensus 393 ~~l~~l~~~ 401 (402)
T TIGR03542 393 EACERIKEA 401 (402)
T ss_pred HHHHHHHhh
Confidence 999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=371.76 Aligned_cols=360 Identities=24% Similarity=0.430 Sum_probs=323.8
Q ss_pred CCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 94 VSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 94 ~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+++|.++.|+|. +.+.+...+|+.++++.+ .++|+|..|....|+++|+|+.+...-..++++|++|+|.++||+
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 489999999976 445688889999998874 688999999999999999999887777789999999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHH
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
.++.+|.+||..|+++.|+|+-|...+...|+++..+.+-++.+|.+|++.++.+++++|.++++.||+||+|.++|.+.
T Consensus 141 ~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 141 LAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH--------HHH
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------HFV 320 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~--------~~~ 320 (470)
+++|++.|+++ +++||.||+|.++.|++.+..++..+.. --.||.+++.||.|=.||||+||++..+ .++
T Consensus 221 L~kiae~A~kl-gi~vIaDEVY~~~vfg~~pfvpmg~fss-iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~ 298 (447)
T KOG0259|consen 221 LKKIAETAKKL-GIMVIADEVYGHTVFGDKPFVPMGKFSS-IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVV 298 (447)
T ss_pred HHHHHHHHHHh-CCeEEehhhcceeecCCCCccchhhccc-cCceEeecccccccccCCceeeeEEEecccccccchHHH
Confidence 99999999999 9999999999999999999999888876 4678999999999988999999999743 344
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCcc
Q 012124 321 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~ 399 (470)
+.+.+... ...+++++.|.|+-..|..- .+++.......++.+.++.++.|+++|++. ...|++.+|+|+.+.-.
T Consensus 299 q~~~~~~~-~~~~p~TiiQ~AlP~IL~kT--p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s- 374 (447)
T KOG0259|consen 299 QGIKNFLD-IIPGPATIIQGALPDILEKT--PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLS- 374 (447)
T ss_pred HHHHHHHh-ccCCccHhHHHHhHHHHHhC--hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchh-
Confidence 56665544 35578999999999998752 478899999999999999999999999998 67899999999987532
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+....++.+|+++|.++..+.+.||..|+.++|+|++++.+.+.+++++.||+++.++.
T Consensus 375 -----~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~Fc~RH 434 (447)
T KOG0259|consen 375 -----LFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKEFCDRH 434 (447)
T ss_pred -----hhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHHHHHhh
Confidence 122334788999999998899999999999999999999999999999999999998754
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=399.10 Aligned_cols=338 Identities=27% Similarity=0.381 Sum_probs=287.5
Q ss_pred HHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCC-CCCCcEEEecChHH
Q 012124 87 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS-YTPDQILVSNGAKQ 165 (470)
Q Consensus 87 ~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~-~~~~~i~it~g~~~ 165 (470)
......+.++++|+.|+|+.+.++.+.+++.+... ..+|+++.|.++||+++++|+.+.+|++ +++++|++|+|+++
T Consensus 20 ~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~ 97 (364)
T PRK07865 20 ATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAAD--APGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKE 97 (364)
T ss_pred HHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHh--hCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHH
Confidence 33345666899999999987777888888877643 3589889999999999999999988987 89999999999999
Q ss_pred HHHHHHHHh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 166 SILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 166 al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
++..++..+ +++||.|++++|+|+.+...++..|++++.++. ++.++. ++++++++++||||||.++
T Consensus 98 ~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~~---~~~~~v~~~~p~NPtG~~~ 165 (364)
T PRK07865 98 LVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTELGP---QRPALIWLNSPSNPTGRVL 165 (364)
T ss_pred HHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCCc---ccceEEEEcCCCCCCCccC
Confidence 999988888 799999999999999999999999999888752 233332 5789999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc--CCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~--~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
+.+++++|+++|+++ +++||+||+|.++.+++.....+... ....+++|+++||||.++++|+|+||+++++++++.
T Consensus 166 ~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~ 244 (364)
T PRK07865 166 GVDHLRKVVAWARER-GAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAE 244 (364)
T ss_pred CHHHHHHHHHHHHHc-CCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHH
Confidence 999999999999999 99999999999988865321111111 112478999999999998899999999999999999
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCc
Q 012124 323 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 402 (470)
Q Consensus 323 l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 402 (470)
+...+.....+++.+.|.++..+|.+ .+++++.++.|+++++.+.+.|++. |+.+..|++|+|+|++++.
T Consensus 245 ~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~----- 314 (364)
T PRK07865 245 LLEVRKHAGMMVPAPVQAAMVAALGD----DAHVREQRERYARRRAVLRPALEAA-GFRVDHSEAGLYLWATRGE----- 314 (364)
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCccEEEEEeCCC-----
Confidence 99887777778999999999999975 6788899999999999999999987 8888888999999998743
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~ 458 (470)
+..++++.|.+ .||.+.||..|+. ++++||+++.+++++++++++|+
T Consensus 315 --------~~~~~~~~l~~-~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 315 --------DCWDTVAWLAE-RGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred --------CHHHHHHHHHH-CCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 45677777654 5999999998873 57999999988899999999985
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=411.87 Aligned_cols=357 Identities=22% Similarity=0.309 Sum_probs=286.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH-HcCCCC-C--CCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE-ENGLSY-T--PDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~-~~g~~~-~--~~~i~it~g~~~al~~~ 170 (470)
++|+|+.|+|++++|+.+.+.+. .+.. .+|+++.|.++||++|++++.+ ..+... . +++|++|+|+++++..+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~-~~~~--~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~ 177 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVD-GIIG--DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYI 177 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHH-HHhc--CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 56999999999999888888554 4432 3599999999999999995544 333222 2 34999999999999999
Q ss_pred HHH-----hcCCCCeEEEcCCCCCChHHHHHHcC--CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccC
Q 012124 171 VLA-----VCSPGDEVIIPAPFWVSYPEMARIAD--ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243 (470)
Q Consensus 171 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~ 243 (470)
+.+ +++|||+|++++|+|+.|...++..| .++++++.+++++|.+|++.+++++++++|+|++++||||||.+
T Consensus 178 ~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v 257 (527)
T PRK09275 178 FDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVA 257 (527)
T ss_pred HHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCC
Confidence 886 68999999999999999999988775 55666666666789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH--hCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH---
Q 012124 244 YPKNLLDEIARIVA--KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--- 318 (470)
Q Consensus 244 ~s~~~~~~l~~~~~--~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~--- 318 (470)
+|.+++++|+++|+ ++ +++||+||+|.+|.+. ..++.... .+++|+++||||.|+++|||+||++++++
T Consensus 258 ~s~e~l~~I~~ia~~~~~-~l~II~DEvY~~f~~~---~~s~~~~~--~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~ 331 (527)
T PRK09275 258 MSDESLEKIADIVNEKRP-DLMIITDDVYGTFVDD---FRSLFAVL--PYNTILVYSFSKYFGATGWRLGVIALHEDNVF 331 (527)
T ss_pred CCHHHHHHHHHHHHhcCC-CcEEEECCCChhhccc---ccCHHHhC--CCCEEEEeehhhhccCcHhHHhhhhcCchhHH
Confidence 99999999999995 45 8999999999997642 33443332 47999999999999999999999999886
Q ss_pred --HHHHH--------------------------------HHHhhhccCCCChHHHHHH-----HHHHhcCCCChHHHHHH
Q 012124 319 --FVAAC--------------------------------NKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKM 359 (470)
Q Consensus 319 --~~~~l--------------------------------~~~~~~~~~~~~~~~q~a~-----~~~l~~~~~~~~~~~~~ 359 (470)
+++.+ +++....+.|.+.+.|.++ .++++. .+.+.+++
T Consensus 332 ~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~---~~~~~~~~ 408 (527)
T PRK09275 332 DKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE---EDAYKKAM 408 (527)
T ss_pred HHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---chHHHHHH
Confidence 33333 4666667788999999873 344554 36789999
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc----CCccc-CCCCCCCHHHHHHHHHHcCCEEEECCCCCC
Q 012124 360 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY----GSEAE-GFGKIENSESLCRYLLDKAQVALVPGDAFG 434 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~----~~~~~-~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~ 434 (470)
++.|++|++.+.+.|. + ++...+|.++||+|++++... +.... -..+..++.+++.+|++++||.+.||..|+
T Consensus 409 ~~~~~~Rr~~l~~~Lg-~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg 486 (527)
T PRK09275 409 KDIIRRRYKALYEGLG-L-PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFG 486 (527)
T ss_pred HHHHHHHHHHHHHHcC-C-CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhC
Confidence 9999999999999883 2 344457899999999987531 00000 000112578899999999999999999998
Q ss_pred C-CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 435 D-DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 435 ~-~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
. ++++|+|++. +++++.++.+||+++++++.
T Consensus 487 ~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~ 519 (527)
T PRK09275 487 GPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYY 519 (527)
T ss_pred CCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 5 5789999996 88999999999999998764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=395.11 Aligned_cols=348 Identities=26% Similarity=0.355 Sum_probs=295.4
Q ss_pred CchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCC-CCC
Q 012124 76 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS-YTP 154 (470)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~-~~~ 154 (470)
+.+..++.....+....++++++|+.|+|+.++++.+.+++.+... ...|+++.|.++||+++++++.+.+|++ +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~ 80 (357)
T TIGR03539 3 DFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLDP 80 (357)
T ss_pred cchHHHHHHHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHh--hCCCCcccCCHHHHHHHHHHHHHhcCCCCCCc
Confidence 4455666666666677788899999999988778888888877643 4679889999999999999999988987 999
Q ss_pred CcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 155 DQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
++|++|+|+++++..++..+ +++||.|++++|+|+.+...++..|++++.++ +++.+. .+++++|++
T Consensus 81 ~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~~~~~~v~~ 148 (357)
T TIGR03539 81 TAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---PVGPDLIWL 148 (357)
T ss_pred CeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---ccCccEEEE
Confidence 99999999999999998888 79999999999999999999999999988764 223332 247899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc--cCCCCCceEEEeccCcccccccceee
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS--LPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
++||||||.++|.+++++|+++|+++ |++||+||+|.++.|++.....+.. .+...+++|+++||||.++++|+|+|
T Consensus 149 ~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G 227 (357)
T TIGR03539 149 NSPGNPTGRVLSVDELRAIVAWARER-GAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAG 227 (357)
T ss_pred eCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEE
Confidence 99999999999999999999999999 9999999999998886532111111 11224689999999999988999999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEE
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~ 391 (470)
|+++++++++.+.+.+.....+++.+.|.++..+|++ ..++++.++.|+++++.+.+.|++. |+.+..|.+|+|+
T Consensus 228 ~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~~ 302 (357)
T TIGR03539 228 FVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD----DGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYL 302 (357)
T ss_pred EEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEEE
Confidence 9999999999998887777778999999999999974 6778889999999999999999887 7888889999999
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHH
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l 457 (470)
|++++. +..++.+.|. ++||.+.||..|+. ++++||+++.+++++++++++|
T Consensus 303 ~~~~~~-------------~~~~~~~~l~-~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 303 WATRGE-------------DAWDTVDRLA-ELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred EEECCC-------------CHHHHHHHHH-hCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 999863 4667887775 55999999998864 4799999999889999999886
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=395.47 Aligned_cols=346 Identities=30% Similarity=0.491 Sum_probs=298.0
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
..++++|+.|.|++++++.+.+++.+.+... ...|++..|.+++|+++++++.+.++..+++++|++|+|+++++..
T Consensus 32 ~~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~ 111 (394)
T PRK06836 32 ADNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNV 111 (394)
T ss_pred CCCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHH
Confidence 3468999999998888889999998887643 5779899999999999999999888888999999999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHH
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
++..++++||.|++++|+|+.+...++..|++++.++++++ ++++|++.++++++++++++++++||||||.++|.+++
T Consensus 112 ~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~ 190 (394)
T PRK06836 112 ALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETL 190 (394)
T ss_pred HHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHH
Confidence 99999999999999999999999999999999999999754 46799999999998899999999999999999999999
Q ss_pred HHHHHHHHh------CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH-
Q 012124 250 DEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA- 322 (470)
Q Consensus 250 ~~l~~~~~~------~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~- 322 (470)
++|+++|++ | +++||+||+|.++.+++...+++... .+++++++||||.+++||+|+||+++++++.+.
T Consensus 191 ~~l~~la~~~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~---~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~ 266 (394)
T PRK06836 191 KALAALLEEKSKEYGR-PIYLISDEPYREIVYDGAEVPYIFKY---YDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDAD 266 (394)
T ss_pred HHHHHHHHHhhhccCC-CeEEEEeccccccccCCCCCCChHHc---cCcEEEEecchhhccCcceeeEEEecCHHHhhhH
Confidence 999999999 8 99999999999998865433333322 468999999999999999999999999876432
Q ss_pred -----HHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 323 -----CNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 323 -----l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
+....... ..+++.+.|.++..++.++ ..++.|+++++.+.+.|+++ |+.+..|.+|||+|+++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~--------~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~ 337 (394)
T PRK06836 267 DLVAALVFANRILGFVNAPALMQRVVAKCLDAT--------VDVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLFPKSP 337 (394)
T ss_pred HHHHHHHHHhhccccccCCHHHHHHHHHHhCCh--------HHHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEEEeCC
Confidence 11112211 2467888999999988751 12567888999999999888 888888999999999987
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.. +..++++.|. ++||.+.||..|+.++++||+++.+++++++++++|++++++++
T Consensus 338 ~~------------~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 338 EE------------DDVAFCEKAK-KHNLLLVPGSGFGCPGYFRLSYCVDTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred CC------------CHHHHHHHHH-hCCEEEECchhcCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 63 6788887765 55999999999988899999999899999999999999998875
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=405.64 Aligned_cols=328 Identities=23% Similarity=0.348 Sum_probs=276.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCC--------C----------------------CChHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD--------F----------------------DTPVLIAEAG 116 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~--------~----------------------~~~~~~~~a~ 116 (470)
+++++..++.+....+..++.++.+.|.++|+|+.|+|+ + .+++.+.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~ 90 (407)
T PLN02368 11 LNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAK 90 (407)
T ss_pred cCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHH
Confidence 455666667666667777778888889999999999997 3 1455566665
Q ss_pred HHHHH--cCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCeEEEcCCCCCChHH
Q 012124 117 INAIR--EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPE 193 (470)
Q Consensus 117 ~~~~~--~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~ 193 (470)
..... .....|+++.|.++||++|++|+.+++|+.+++++|++|+|+++++..++.+++ +|||+|++++|+|+.|..
T Consensus 91 ~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~ 170 (407)
T PLN02368 91 HYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSA 170 (407)
T ss_pred HHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHH
Confidence 44222 236789999999999999999999888998999999999999999999999987 799999999999999999
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
.++..|++++.++++.+++|++|++.|++.+++ ++|++++++||||||.++|.+++++|+++|++| +++||+|
T Consensus 171 ~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~-~~~II~D 249 (407)
T PLN02368 171 TISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQE-RLVLLGD 249 (407)
T ss_pred HHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEE
Confidence 999999999999998777899999999999864 689999999999999999999999999999999 9999999
Q ss_pred ccccccccCCC-Cccccccc----CC---CCCceEEEeccCccc-ccccceeeEEE---cCHHHHHHHHHHhhhccCCCC
Q 012124 268 EIYEHIIYAPA-THTSFASL----PG---MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGAS 335 (470)
Q Consensus 268 d~~~~~~~~~~-~~~~~~~~----~~---~~~~~i~i~S~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~ 335 (470)
|+|.++.|++. ...++..+ ++ ..+++|+++||||.| +++|+|+||++ +++++++.+.+... ..++++
T Consensus 250 E~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~~ 328 (407)
T PLN02368 250 EVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSPN 328 (407)
T ss_pred ccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCCC
Confidence 99999999764 33444332 11 135899999999998 89999999999 58999999988753 456789
Q ss_pred hHHHHHHHHHHhcCCCC----hHHH---HHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 336 SISQKAGVAALGLGYAG----GEVV---SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 336 ~~~q~a~~~~l~~~~~~----~~~~---~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
.+.|.++.++|+.+..+ +.+. +++++.|++|++++.+.|++++|+.+..|+|+||+|++++
T Consensus 329 ~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 329 VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 99999999999753200 1233 5578999999999999999999999999999999997665
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=407.47 Aligned_cols=362 Identities=16% Similarity=0.178 Sum_probs=286.0
Q ss_pred cccCCchHHHHHHHHHHHHhcCCCeEEccCCC---CCCCCh--HHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHH
Q 012124 72 NAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLK 145 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~---~~~~~~--~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~ 145 (470)
...+++....+....... ..+++|+|+.|. |+..+| +.+.+++.+.+.. ....|++..|.++||+++++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~ 83 (396)
T PRK09257 6 EAAPADPILGLMEAFRAD--PRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLF 83 (396)
T ss_pred CCCCCChHHHHHHHHhhC--CCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhc
Confidence 344454444443333221 124679999996 443444 6788888887654 34579999999999999999998
Q ss_pred HHcCCCCCCCcE--EEecChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 146 EENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 146 ~~~g~~~~~~~i--~it~g~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
+..+..+++++| ++|+|+++++.++++.+ ++|||+|++++|+|+.|..+++..|++++.+|+..++++++|+|.++
T Consensus 84 ~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~ 163 (396)
T PRK09257 84 GADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAML 163 (396)
T ss_pred CCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHH
Confidence 755555688887 99999999999998766 58999999999999999999999999999999843445789999999
Q ss_pred hhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccC-CCCcccccccCCCCCceEEEe
Q 012124 222 SKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVN 297 (470)
Q Consensus 222 ~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~ 297 (470)
+.++ .+++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.++ +....++..+++..+++|+++
T Consensus 164 ~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~ 242 (396)
T PRK09257 164 ADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVAS 242 (396)
T ss_pred HHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEE
Confidence 9875 2345556699999999999999999999999999 9999999999998875 222345555554457899999
Q ss_pred ccCcccccccceeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHH
Q 012124 298 GFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRERR 367 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~~ 367 (470)
||||.++++|+|+||+++ +++ ++..+.........+++.+.|.++..++.++.+ .+++++++++.|++++
T Consensus 243 SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr 322 (396)
T PRK09257 243 SFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMR 322 (396)
T ss_pred EcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988999999973 444 344444444445556789999999999987532 1567889999999999
Q ss_pred HHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012124 368 DFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444 (470)
Q Consensus 368 ~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~ 444 (470)
+.+.+.|+++. ++.+..|++|||+|++++ . +++.+|++++||.+.|. + ||+|+
T Consensus 323 ~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~---------------~-~~~~~l~~~~~V~~~p~------~--ri~~~ 378 (396)
T PRK09257 323 QLLVEALKAKGPSRDFDFIARQRGMFSYSGLT---------------P-EQVDRLREEFGVYAVGS------G--RINVA 378 (396)
T ss_pred HHHHHHHHhcCCCCCcccccccceEEEecCCC---------------H-HHHHHHHHcCCEEEcCC------C--eEEEe
Confidence 99999998862 377888999999999874 2 34566778889999873 2 99998
Q ss_pred c-CHHHHHHHHHHHHHH
Q 012124 445 A-SLTTLQAAVERIKKG 460 (470)
Q Consensus 445 ~-~~~~i~~~l~~l~~~ 460 (470)
. ++++|++++++|+++
T Consensus 379 ~~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 379 GLNESNIDYVAEAIAAV 395 (396)
T ss_pred eCCHHHHHHHHHHHHhh
Confidence 6 999999999999875
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=407.86 Aligned_cols=364 Identities=17% Similarity=0.162 Sum_probs=285.3
Q ss_pred ccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-CCCChHHHHHHHHHHH----H-cCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 73 AVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAI----R-EGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~----~-~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
..+..++..+.+.+.+ ..++++++|+.|.| +..++....+++.+++ . ....+|+++.|.++||+++++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 87 (404)
T PTZ00376 10 LGPPDPILGLAAAFKA--DPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFG 87 (404)
T ss_pred cCCCChHHHHHHHHhh--cCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcC
Confidence 3344444444443321 22457899999996 4555443344444443 2 2357899999999999999999976
Q ss_pred HcCCCCCCCcEE--EecChHHHHHHHHH---HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 147 ENGLSYTPDQIL--VSNGAKQSILQAVL---AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 147 ~~g~~~~~~~i~--it~g~~~al~~~~~---~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
..+..+++++|+ .|.|+++++.+++. ++++|||+|++++|+|+.|...++..|++++.+|+..++++++|++.++
T Consensus 88 ~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~ 167 (404)
T PTZ00376 88 EASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGML 167 (404)
T ss_pred CCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHH
Confidence 555667889998 59999999988875 5689999999999999999999999999999999965556889999999
Q ss_pred hhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceEEE
Q 012124 222 SKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTV 296 (470)
Q Consensus 222 ~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i~i 296 (470)
+.++ ++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++. ...++..+....+++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i 246 (404)
T PTZ00376 168 EDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRK-NLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVA 246 (404)
T ss_pred HHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 9884 3456677799999999999999999999999999 999999999999988541 223444444334689999
Q ss_pred eccCcccccccceeeEE---EcCHHHHHHH----HHHhhhccCCCChHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTGWRLGYI---AGPKHFVAAC----NKIQSQFTSGASSISQKAGVAALGLGYAGG---EVVSKMVKAFRER 366 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~---~~~~~~~~~l----~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~---~~~~~~~~~~~~~ 366 (470)
+||||.++++|+|+||+ ++++++++.+ .+.......+++.+.|.++..+|+++.+.+ +++++.++.|+++
T Consensus 247 ~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 326 (404)
T PTZ00376 247 QSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNM 326 (404)
T ss_pred EeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 5788765544 333333344568899999999998743212 3466778899999
Q ss_pred HHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012124 367 RDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 443 (470)
Q Consensus 367 ~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~ 443 (470)
++.+.+.|+++. ++.+..|.+|||+|++++ .+++++|++++||.+.||. |+++
T Consensus 327 r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~----------------~~~~~~L~~~~~v~v~p~~--------Ris~ 382 (404)
T PTZ00376 327 RQLLYDELKALGSPGDWEHIINQIGMFSFTGLT----------------KEQVERLIEKYHIYLLDNG--------RISV 382 (404)
T ss_pred HHHHHHHHHhcCCCCcccccccCceEEEecCCC----------------HHHHHHHHHhCCEeecCCC--------eEEE
Confidence 999999998862 355667899999999863 3678889988899999971 9999
Q ss_pred ec-CHHHHHHHHHHHHHHHHh
Q 012124 444 AA-SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 444 ~~-~~~~i~~~l~~l~~~l~~ 463 (470)
+. +.+++++++++|++++..
T Consensus 383 ~~~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 383 AGLTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred eccCHHhHHHHHHHHHHHHhc
Confidence 84 899999999999998753
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=368.40 Aligned_cols=355 Identities=29% Similarity=0.495 Sum_probs=322.7
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.+++.|+..+.|+..|+.+++++++.+.++.++|+ .+..++.+++++|.+++++..+.++.|++++|...++..+++.
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~ 102 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRA 102 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHH
Confidence 57899999999999999999999999999999994 6778899999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
|.+|||.|++..|.|+++.+.....|.+++..|+. .++.|.+|++.||+++.+ +++++++||||||||.+++.+++++
T Consensus 103 ~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~ 182 (388)
T COG1168 103 LTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK 182 (388)
T ss_pred hCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence 99999999999999999999999999999999998 456788899999999965 5799999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCHH-HHH-HHHHHhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVA-ACNKIQS 328 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~-~l~~~~~ 328 (470)
|.++|.+| |+.||.||.|+++.+.++.+.++.++.+. .+++|.+.|.||+|+++|+.+++++.+.+ +.. .++++..
T Consensus 183 i~elc~kh-~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~ 261 (388)
T COG1168 183 IAELCLRH-GVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR 261 (388)
T ss_pred HHHHHHHc-CCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence 99999999 99999999999999999888888777542 48899999999999999999999887654 433 3455566
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 407 (470)
....++|.++..|..++.+. ++.|++++.+.++.+++++.+.|++ +|++++..|++.+.+|+++....
T Consensus 262 ~~~~~~n~lg~~A~~aAY~~---G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~-------- 330 (388)
T COG1168 262 NGLHGPSALGIIATEAAYNQ---GEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELG-------- 330 (388)
T ss_pred hcCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccC--------
Confidence 67778999999999999998 4899999999999999999999988 79999999999999999997652
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~~--~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
.++.++.+.|+++.+|.+.+|..||.. +++|++++.+.+.++++++||+..++..
T Consensus 331 --l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 331 --LDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILEEALERLKRALKKR 387 (388)
T ss_pred --CChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence 256789999999999999999999964 6999999999999999999999988754
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=400.63 Aligned_cols=352 Identities=18% Similarity=0.315 Sum_probs=285.7
Q ss_pred CCeEEccCCCCCCCC-h-HHHHHHHHHHHHcC-----CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDT-P-VLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~-~-~~~~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+++|+|+.|.|+..+ + +.+.+++.+.+... ...|+++.|.++||++|++|+.+.+|+.+++++|++|+|++++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 567999999998544 3 45667777766532 3579999999999999999999889999999999999999999
Q ss_pred HHHHHHHhcC-----CCCeEEE-cCCCCCChHHHHHHcCC----EEEEecCcCCC-CCccCHHhHhhhccCCceEEEEcC
Q 012124 167 ILQAVLAVCS-----PGDEVII-PAPFWVSYPEMARIADA----TPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCS 235 (470)
Q Consensus 167 l~~~~~~l~~-----~gd~Vlv-~~p~y~~~~~~~~~~g~----~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~i~l~~ 235 (470)
+.+++.++++ +||.|++ ++|+|+.|...+...|. .+..++++.++ ++++|++.|+ +.++++++++++
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~ 187 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSR 187 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEec
Confidence 9999999985 6899999 79999999886654332 12223332221 4679999997 456789999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC-CCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
||||||.++|.+++++|+++|+++ +++||+||+|.++... ....... ...+++|+++||||. ++||+|+||++
T Consensus 188 P~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~----~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i 261 (416)
T PRK09440 188 PTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAYGPPFPG----IIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVI 261 (416)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHc-CCcEEEeCCccccCCC----cchhhcCccccCCeEEEeccccc-CCCcceEEEEe
Confidence 999999999999999999999999 9999999999863211 1111111 114789999999996 78999999999
Q ss_pred cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH-HHHHHHHHHHHHHHHhcc-CC--CCeecCCCceEE
Q 012124 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFY 390 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~~ 390 (470)
+++++++.+.........+++.+.|.++..+++++.+ .++..+ +++.|+++++.+.+.|.+ ++ ++.+..|++|+|
T Consensus 262 ~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~f 340 (416)
T PRK09440 262 ADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIF 340 (416)
T ss_pred CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceE
Confidence 9999999999888877788999999999999998765 566555 688899999999998876 33 356678899999
Q ss_pred EeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 391 LFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 391 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---------~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
+|++++. .+ ++.++++.|. ++||.+.||..|+. .+++||+++.+++++++++++|+++
T Consensus 341 iw~~~~~~~~-----------~~~~~~~~l~-~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~ 408 (416)
T PRK09440 341 LWLWFKDLPI-----------TTEELYQRLK-ARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEE 408 (416)
T ss_pred EEEECCCCCC-----------CHHHHHHHHH-HCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHH
Confidence 9999986 22 6678888765 56999999998853 2589999988889999999999999
Q ss_pred HHhhCC
Q 012124 461 LLTLRP 466 (470)
Q Consensus 461 l~~~~~ 466 (470)
+++..+
T Consensus 409 ~~~~~~ 414 (416)
T PRK09440 409 VEKAYA 414 (416)
T ss_pred HHHHhh
Confidence 987654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=393.55 Aligned_cols=336 Identities=24% Similarity=0.366 Sum_probs=283.1
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCcCcHHHHHHHHHHHHHHc--CCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEEN--GLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~--g~~~~~~~i~it~g~~~al~~~ 170 (470)
.+++|+.|+|++++|+.+.+++.+++... ...| +..|.++||++|++|+.+.+ |+.+++++|++|+|+++++..+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~ 107 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL 107 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence 47999999999999999999999987764 3578 55799999999999998766 5778999999999999999988
Q ss_pred HHHhcCCCC-eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCCCcccCCC
Q 012124 171 VLAVCSPGD-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 171 ~~~l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPtG~~~s 245 (470)
+.+++.+|| .|++++|+|+.|...++..|++++.++++. +++++|++.|+++++ +++++|++++||||||.++|
T Consensus 108 ~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s 186 (374)
T PRK02610 108 LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLT 186 (374)
T ss_pred HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC
Confidence 888888886 899999999999999999999999999863 457899999999886 48999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~ 325 (470)
.+++++|+++| + +++||+||+|.+|.+. ..+..+.. .+++|+++||||.+|+||+|+||+++++++++.+.+
T Consensus 187 ~~~l~~l~~~~--~-~~~iI~De~Y~~~~~~----~~~~~~~~-~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~ 258 (374)
T PRK02610 187 AAELEWLRSLP--E-DILVVIDEAYFEFSQT----TLVGELAQ-HPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEK 258 (374)
T ss_pred HHHHHHHHhcc--C-CcEEEEeccccccCcc----chHHHHhc-CCCEEEEEecchhccCcccceeeeecCHHHHHHHHH
Confidence 99999999876 5 8999999999997542 12223333 467899999999999999999999999999999988
Q ss_pred HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
.+. .++.+.+.|.++..++.+ .+.+.+.+++.+++ ++.+.+.|++++++.+. |.+|+|+|+++|...
T Consensus 259 ~~~--~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~~~------ 325 (374)
T PRK02610 259 VRL--PYNLPSFSQLAAQLALEH---RQELLAAIPEILQE-RDRLYQALQELPQLRVW-PSAANFLYLRLSQDA------ 325 (374)
T ss_pred hcC--CCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEeC-CCcceEEEEeCCCCC------
Confidence 763 355789999999999875 36677777766665 67788899888787754 788999999998643
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++++.|.+ +||.+.++ ++++||+++.+ +++++++++|+++++++.
T Consensus 326 -----~~~~~~~~l~~-~gi~v~~~-----~~~lRls~~~~-~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 326 -----ALAALHQALKA-QGTLVRHT-----GGGLRITIGTP-EENQRTLERLQAALTQLE 373 (374)
T ss_pred -----CHHHHHHHHHH-CCEEEEeC-----CCeEEEeCCCH-HHHHHHHHHHHHHHhhcC
Confidence 67888888754 59999864 46899999864 568999999999988764
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=395.27 Aligned_cols=358 Identities=22% Similarity=0.321 Sum_probs=280.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHH-HHHHHHcCCC-CCCC--cEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC-HKLKEENGLS-YTPD--QILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia-~~l~~~~g~~-~~~~--~i~it~g~~~al~~~ 170 (470)
++|+|+.|+|++++++.+ .++.+.+.. . +|+++.|..+++++++ +|+.+.++.. ..++ +|++|+|+++++..+
T Consensus 95 ~~i~l~~g~p~~~~~~~~-~~~~~~~~~-~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFL-YEMCDGIIG-D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred HHHhhcCCCCCCCCCHHH-HHHHHHhhc-C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 469999999999865444 555555432 2 5877888888888887 5666655433 3334 899999999999998
Q ss_pred HHH-----hcCCCCeEEEcCCCCCChHHHHHHc--CCEEEEecCcCCCC-----CccCHHhHhhhccCCceEEEEcCCCC
Q 012124 171 VLA-----VCSPGDEVIIPAPFWVSYPEMARIA--DATPVILPTRISEN-----FLLDPKVLESKLTEKSRLLILCSPSN 238 (470)
Q Consensus 171 ~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~--g~~~~~v~~~~~~~-----~~~d~~~l~~~l~~~~~~i~l~~p~n 238 (470)
+.+ +++|||+|++++|+|+.|...++.. |++++.++.+.+++ |.+|++.+++++++++|+|++++|||
T Consensus 172 ~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~N 251 (521)
T TIGR03801 172 FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSN 251 (521)
T ss_pred HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCC
Confidence 887 6899999999999999999987775 78888888765433 88999999999888999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhC-CCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 239 PTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~-~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|||.++|.+++++|+++|++| ++++||+||+|.+|.+. ..++.... .+++|+++||||.||++|||+||+++++
T Consensus 252 PTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~--~~~vI~v~SfSK~fg~~G~RlG~i~~~~ 326 (521)
T TIGR03801 252 PPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAEL--PYNTIGVYSFSKYFGATGWRLGTIALHK 326 (521)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhC--CCCEEEEEcchhhccCchhhhhhhhcCc
Confidence 999999999999999999874 38999999999997752 33444443 3689999999999999999999999986
Q ss_pred H-----HHH--------HH------------------------HHHhhhccCCCChHHHH-----HHHHHHhcCCCChHH
Q 012124 318 H-----FVA--------AC------------------------NKIQSQFTSGASSISQK-----AGVAALGLGYAGGEV 355 (470)
Q Consensus 318 ~-----~~~--------~l------------------------~~~~~~~~~~~~~~~q~-----a~~~~l~~~~~~~~~ 355 (470)
+ ++. .+ +++....+.+.+.+.|. ++.++++. .+.+
T Consensus 327 ~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~---~~~y 403 (521)
T TIGR03801 327 DNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK---ENAY 403 (521)
T ss_pred hHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc---chhH
Confidence 4 221 11 34455556677888776 34455554 3678
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC----CcccC-CCCCCCHHHHHHHHHHcCCEEEECC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG----SEAEG-FGKIENSESLCRYLLDKAQVALVPG 430 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~----~~~~~-~~~~~~~~~l~~~L~~~~gI~v~pg 430 (470)
.+++++.+++|++.+.+.| .+ .+...++.++||+|+++++... ..... ..+..++.+++.+|++++||.+.||
T Consensus 404 ~~~~~~~~~~R~~~l~~~L-g~-~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG 481 (521)
T TIGR03801 404 KAETKDICRRREKLLFRGL-GL-PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPG 481 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc-CC-CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCc
Confidence 9999999999999999998 22 2334568999999999975310 00000 0001156889999999999999999
Q ss_pred CCCCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 431 DAFGD-DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 431 ~~f~~-~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
..|+. ++++|+|++. ++++++++.++|+++++++.
T Consensus 482 ~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~ 518 (521)
T TIGR03801 482 GGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYY 518 (521)
T ss_pred hhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99986 4689999996 89999999999999998764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=386.85 Aligned_cols=335 Identities=24% Similarity=0.377 Sum_probs=283.7
Q ss_pred HHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 86 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 86 ~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+......+.++++|+.|++++.+|+.+.+++.+.+. ....|+ ..|.++||++|++++ + +++++|++|+|+++
T Consensus 22 ~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~-~~~~~~lr~~ia~~~----~--~~~~~I~it~G~~~ 93 (357)
T PRK14809 22 ARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAE-RVHSYP-KASHADLTAALADRW----D--VSPEQVWLANGGDG 93 (357)
T ss_pred HHHhCCCccceeEecCCCCCCCCCHHHHHHHHHHHh-hhhcCC-CCCHHHHHHHHHHHh----C--CCcceEEECCCHHH
Confidence 344433556899999999999998888899888765 367784 578999999999987 3 68899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++.++++++++|||.|++++|+|+.+...++..|++++.++++.++++.++++.+++.. +++++|++++||||||.++|
T Consensus 94 al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s 172 (357)
T PRK14809 94 ALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIP 172 (357)
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCC
Confidence 99999999999999999999999999888899999999999976667888888887765 36899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~ 325 (470)
.+++++|+++|+ + +++||+||+|.++.+.+. .+..+. ..+++++++||||.+|+||+|+||+++++++++.+.+
T Consensus 173 ~~~~~~l~~~~~-~-~~~iI~De~y~~~~~~~~---~~~~~~-~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~ 246 (357)
T PRK14809 173 LDEVEALAERTD-E-ETLVVVDEAYGEFAERPS---AVALVE-ERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYAR 246 (357)
T ss_pred HHHHHHHHHhCc-c-CcEEEEechhhhccCCch---hHHHHh-hCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHH
Confidence 999999999986 4 678999999999876431 122222 2579999999999999999999999999999999887
Q ss_pred HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
... .++.+.+.|.++..+|.+ ++++++.++.++++++.+.+.|... + .+.+|+|+|++++
T Consensus 247 ~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-~----~~~~g~f~~~~~~--------- 306 (357)
T PRK14809 247 VNT--PFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAP-T----WESAGNFVLAEVG--------- 306 (357)
T ss_pred hCC--CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCc-c----CCCCCCEEEEECC---------
Confidence 653 456889999999999874 7889999999999999999998653 2 2567888999885
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|. ++||.+.||..|+.+++|||+++. .+++++++++|+++++
T Consensus 307 -----~~~~~~~~l~-~~gv~v~~g~~f~~~~~iRls~~~-~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 307 -----DASAVAEAAQ-ERGVIVRDCTSFGLPECIRITCGT-REETERAVEVLNEVLA 356 (357)
T ss_pred -----CHHHHHHHHH-HCCEEEEECccCCCCCeEEEecCC-HHHHHHHHHHHHHHhc
Confidence 4668888765 559999999999888999999874 6899999999998875
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=415.96 Aligned_cols=362 Identities=19% Similarity=0.249 Sum_probs=296.1
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~ 170 (470)
+++++|+|+.|+|++++|+.+++++.+.+.... + ..|.+++|++|++++.+.+|++.++ ++|++|+|+++++..+
T Consensus 695 ~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~--~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~ll 770 (1082)
T PLN02672 695 QESSLIHMDVDESFLPVPSAVKASIFESFVRQN--I--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKL 770 (1082)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcC--C--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHH
Confidence 467899999999999999999999998875432 2 3467889999999999999998765 5899999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCC-CCcccCCCHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPS-NPTGSVYPKNL 248 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~-nPtG~~~s~~~ 248 (470)
+.++++|||.|++++|+|+.|...++..|++++.+|++.+++|.+|++.|++++++ +.+.|++++|+ ||||.++|.++
T Consensus 771 l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~ee 850 (1082)
T PLN02672 771 VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSE 850 (1082)
T ss_pred HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHH
Confidence 99999999999999999999999999999999999998777899999999999966 45688999996 99999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCc--cccc----ccCCC--CCceEEEeccCcccccccceeeEEEcCH-HH
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFA----SLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPK-HF 319 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~--~~~~----~~~~~--~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~ 319 (470)
+++|+++|++| |++||+||+|+++.|++... .++. .++.. ..++|+++||||.++++|+|+||+++++ ++
T Consensus 851 Le~Llela~k~-di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eL 929 (1082)
T PLN02672 851 IEEILSVCAKY-GARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVL 929 (1082)
T ss_pred HHHHHHHHHHc-CCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHH
Confidence 99999999999 99999999999998875421 1111 12211 2479999999999999999999999865 48
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeee
Q 012124 320 VAACNKIQSQFTSGASSISQKAGVAALG-----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394 (470)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~q~a~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~ 394 (470)
++.+.+...... +..+.|.++..++. .+.+ .+++++.++.++++++++.+.|++. |+.+..|++|||+|++
T Consensus 930 i~~l~~~~~~s~--~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~ 1005 (1082)
T PLN02672 930 IDAFHSAPGLSR--PHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAK 1005 (1082)
T ss_pred HHHHHHhhhhcC--CCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEE
Confidence 888887643322 33445555554442 2222 4678888899999999999999988 8999999999999998
Q ss_pred ccCccCCc--ccCC----CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 395 FSTYYGSE--AEGF----GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 395 ~~~~~~~~--~~~~----~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
++...+.. .... +...++.++++.|++++||.+.||..|+.++++||+++.+++++++++++|+++.+
T Consensus 1006 l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1006 PSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred ccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 75321100 0000 00126788999999888999999998888899999999988999999999998764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=397.19 Aligned_cols=346 Identities=32% Similarity=0.541 Sum_probs=302.1
Q ss_pred CeEEccCCCCCCC----ChHHHHHHHHH--HHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFD----TPVLIAEAGIN--AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~----~~~~~~~a~~~--~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al 167 (470)
++|+|+.|+++.. +++++.+++.+ ........|+++.|.++||+++++++.+..|++++++ +|++++|+++++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5799999999877 45666666655 3334688999999999999999999998889999999 999999999999
Q ss_pred HHHHHHh-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCc
Q 012124 168 LQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT 240 (470)
Q Consensus 168 ~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPt 240 (470)
..++..+ .++||+|++++|+|+.+...++..|++++.++++.++++.+|++.|++.+++ +++++++++|||||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999999 8899999999999999999999999999999988778889999999999976 67899999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc-ccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
|.++|.+++++|+++|++| +++||+||+|.++.++.....+ ...++. ..++|+++||||.+|++|+|+||+++++++
T Consensus 162 G~~~~~~~l~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~ 239 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREY-NIIIIVDEAYSDLIFGDPDFGPIRSLLDE-DDNVIVVGSLSKSFGLPGLRVGYIVAPPEL 239 (363)
T ss_dssp TBB--HHHHHHHHHHHHHT-TSEEEEEETTTTGBSSSSHTHHHHGHHTT-TSTEEEEEESTTTTTSGGGTEEEEEEEHHH
T ss_pred ccccccccccchhhhhccc-ccceeeeeceeccccCCCccCcccccccc-cccceeeeeccccccccccccccccchhhh
Confidence 9999999999999999999 9999999999999887543323 333443 456999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc
Q 012124 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~ 399 (470)
++.++.....+.. +.+.|.++..++.+.....++++++++.++++++++.+.|++. |+.+..+.+|+|+|+.++..
T Consensus 240 ~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~- 315 (363)
T PF00155_consen 240 IERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPEAGFFLWVRLDPN- 315 (363)
T ss_dssp HHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEEEEESHH-
T ss_pred hhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEEEEcccc-
Confidence 9999988876654 8888998888888632112389999999999999999999988 99999888999999998753
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-cCHHHHHHHHHHH
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERI 457 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-~~~~~i~~~l~~l 457 (470)
++.+++++|+++.||.+.||..|+.++++|++++ .+++++++++++|
T Consensus 316 -----------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 316 -----------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp -----------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 5789999999887999999999999999999994 4999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=382.06 Aligned_cols=332 Identities=21% Similarity=0.380 Sum_probs=281.0
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++++|+.|.|+..+|+.+++++.+.+. ....|+ ..+.++||+++++|+ + +++++|++|+|+++++..++.+
T Consensus 19 ~~~~~l~~~~~~~~~p~~~~~a~~~~~~-~~~~Y~-~~~~~~lr~~ia~~~----~--~~~~~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 19 NMILDFSANINPLGVPESLKQAITENLD-KLVEYP-DPDYLELRKRIASFE----Q--LDLENVILGNGATELIFNIVKV 90 (354)
T ss_pred cceEEecCCCCCCCCCHHHHHHHHHHHH-hhhcCC-CccHHHHHHHHHHHh----C--CChhhEEECCCHHHHHHHHHHH
Confidence 3579999999888889999999998775 367784 557899999999997 3 6889999999999999999988
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+ .+ +.|++++|+|+.+...++..|++++.++++.++++.+| +.+.+.+.++++++++++||||||.+++.+++++|+
T Consensus 91 ~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~ 167 (354)
T PRK06358 91 T-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKIL 167 (354)
T ss_pred h-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHH
Confidence 6 44 68999999999999999999999999999877778899 666666666899999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhccC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTS 332 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~ 332 (470)
++|+++ +++||+||+|.+|.+++...+.+..++. .+++|+++||||.+|+||+|+||++++ +.+++.+.+... .+
T Consensus 168 ~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~--~~ 243 (354)
T PRK06358 168 DKCEKR-NIYLIIDEAFMDFLEENETISMINYLEN-FKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMRE--PW 243 (354)
T ss_pred HHHHhc-CCEEEEeCcccccCCCccchhHHHhccC-CCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--CC
Confidence 999999 9999999999999887543333334443 589999999999999999999999985 678888887764 45
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++..++++ ..++++.++.++++++.+.+.|++++|+.+..|.++ |+|++++ +.
T Consensus 244 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~--------------~~ 304 (354)
T PRK06358 244 SINTFADLAGQTLLDD----KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLE--------------KP 304 (354)
T ss_pred cchHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcC--------------ch
Confidence 6899999999999974 678899999999999999999998888888877665 6899987 34
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
.++++.|+++ ||.+.||..|+. ++++||+++.+ ++.+++++.|++++
T Consensus 305 ~~~~~~l~~~-gI~v~~~~~f~~~~~~~iRls~~~~-~~~~~l~~~l~~~~ 353 (354)
T PRK06358 305 IDLRKELLKK-GILIRSCSNYRGLDENYYRVAVKSR-EDNKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHHHC-CeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 6888888765 999999999953 47899998864 46677777777654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=386.96 Aligned_cols=334 Identities=21% Similarity=0.339 Sum_probs=283.7
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.++++|+|+.|+|++++|+.+++++.+.+.. ...| |..|.++||++|++++ | +++++|++|+|+++++.+++
T Consensus 27 ~~~~~i~l~~nen~~~~~~~v~~a~~~~~~~-~~~Y-p~~g~~~Lr~aia~~~----~--~~~~~I~vt~Gs~e~i~~~~ 98 (366)
T PRK01533 27 GDHSFVKLASNENPFGCSPRVLDELQKSWLD-HALY-PDGGATTLRQTIANKL----H--VKMEQVLCGSGLDEVIQIIS 98 (366)
T ss_pred CCCceEEeCCCCCCCCCCHHHHHHHHHHHHh-cCcC-CCCCHHHHHHHHHHHh----C--CCcceEEECCCHHHHHHHHH
Confidence 3457899999999999999999999887654 3456 7789999999999997 3 68899999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++++||+|++++|+|+.|...++..|++++.++++ ++++|++.|+++++++++++++++||||||.+++.+++++
T Consensus 99 ~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 99 RAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred HHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999985 2359999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
|+++|+++ ++ +|+||+|.+|.+.+.....+..++. .+++|+++||||.||++|+|+||+++++++++.+.+... .
T Consensus 176 l~~~~~~~-~~-~iiDe~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~--~ 250 (366)
T PRK01533 176 FIEGISEN-TL-IVIDEAYYEYVTAKDFPETLPLLEK-HKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL--P 250 (366)
T ss_pred HHHhCCCC-CE-EEEEccHHHhhccccCcchhHHhcc-CCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC--C
Confidence 99999887 65 5669999988765322222222332 579999999999999999999999999999999988763 4
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
++.+.+.|.++.++|++ .++.++.++.++++++.+.+.++.+ |+.+.++. |.|+|++++ +
T Consensus 251 ~~~~~~~q~aa~~~l~~----~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~~~-~nf~~~~~~--------------~ 310 (366)
T PRK01533 251 FNVSSLAQKAATIAFGD----DEFIEEIVRVNTEGLRQYESFCKEN-EIPFYQSQ-TNFIFLPVE--------------N 310 (366)
T ss_pred CCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCccCCCc-CcEEEEeCC--------------C
Confidence 67999999999999975 6788888888889999998888877 78887775 456999886 4
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCCCC
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRPGV 468 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~~~ 468 (470)
..++.+.|++ +||.|++ | ++++||+++.. ++++.+++.|+++++..++..
T Consensus 311 ~~~~~~~l~~-~GI~Vr~---~--~~~iRis~~~~-~~~~~l~~al~~~~~~~~~~~ 360 (366)
T PRK01533 311 GGEIYEACAH-AGFIIRP---F--PNGVRITVGTR-EQNEGVISVLQQHFENKKRKS 360 (366)
T ss_pred HHHHHHHHHH-CCcEEcc---C--CCceEEeCCCH-HHHHHHHHHHHHHHHhccccc
Confidence 5678888875 5999997 4 58899998854 678899999999888776643
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=389.96 Aligned_cols=363 Identities=17% Similarity=0.184 Sum_probs=273.1
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCC-CCCCChH----HHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGE-PDFDTPV----LIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~-~~~~~~~----~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l 144 (470)
....+...+..+.+.... ..+...++|+.|. |+...++ .+.++....+..+ ..+|+++.|.++||+++++|+
T Consensus 27 ~~~~~~~~i~~~~~~~~~--~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~ 104 (423)
T PLN02397 27 VEPAPPDPILGVTEAFLA--DPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLA 104 (423)
T ss_pred CCcCCCChHHHHHHHHhh--CCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHH
Confidence 334444444444433322 1344678999986 6655444 3444443333333 457999999999999999999
Q ss_pred HHHcCCCCCCCcE-----EEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHh
Q 012124 145 KEENGLSYTPDQI-----LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 219 (470)
Q Consensus 145 ~~~~g~~~~~~~i-----~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 219 (470)
.+..+...++++| ++++|+.+ +...+..++.|||+|++++|+|+.|...++..|++++.+|+..++++++|++.
T Consensus 105 ~~~~~~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~ 183 (423)
T PLN02397 105 YGADSPAIKENRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDG 183 (423)
T ss_pred cCCCCchhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHH
Confidence 6543333333343 33444443 33344445579999999999999999999999999999998544457899998
Q ss_pred Hhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceE
Q 012124 220 LESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTL 294 (470)
Q Consensus 220 l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i 294 (470)
+++.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.+|.|++. ...++..+....+++|
T Consensus 184 l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI 262 (423)
T PLN02397 184 LLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEIL 262 (423)
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEE
Confidence 887774 4677888899999999999999999999999999 999999999999998641 2334444433346799
Q ss_pred EEeccCcccccccceeeEEE--c-CHHHHH----HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHH---HHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWRLGYIA--G-PKHFVA----ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKAFR 364 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~--~-~~~~~~----~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~---~~~~~~~~~ 364 (470)
+++||||+++++|+|+||++ + ++++++ .+.+.......+++.+.|.++..+|+++.+.+.+ ++++++.|+
T Consensus 263 ~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 342 (423)
T PLN02397 263 VAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRII 342 (423)
T ss_pred EEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 4 666544 3444444455678889999999999864221233 788899999
Q ss_pred HHHHHHHHHhccCCC----CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012124 365 ERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 440 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iR 440 (470)
++++.+.+.|+++ | +.+..|++|||+|++++ .+++++|++++||.+.++ + |
T Consensus 343 ~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~----------------~~~~~~Ll~~~~V~v~~~------~--R 397 (423)
T PLN02397 343 SMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLN----------------KEQVDRMTKEYHIYMTRD------G--R 397 (423)
T ss_pred HHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCC----------------HHHHHHHHHhCCEEECCC------C--e
Confidence 9999999999987 5 77778999999999873 248889999999999743 2 9
Q ss_pred EEeec-CHHHHHHHHHHHHHHHH
Q 012124 441 ISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 441 ls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
++++. +.+++++++++|+++++
T Consensus 398 i~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 398 ISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred EEEeeCCHHHHHHHHHHHHHHHh
Confidence 99985 99999999999999985
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=381.00 Aligned_cols=330 Identities=23% Similarity=0.336 Sum_probs=283.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++++|+.|+|++.+++.+.+++.+.+.. ..|.+..|.++||+++++++ + +++++|++|+|+++++..++++
T Consensus 29 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~~p~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 29 EKIVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHL----G--VDEEQLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHHh----C--CCHHHEEECCCHHHHHHHHHHH
Confidence 36799999999988888899999887754 34557789999999999997 3 5789999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
++++||.|++++|+|+.+...+...|++++.+|++ ++++|++.+++.++++++++++++||||||.+++.+++.+++
T Consensus 101 ~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~ 177 (359)
T PRK03158 101 LLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFL 177 (359)
T ss_pred HhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999986 345899999999988999999999999999999999999998
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
+.|+ + +++||+||+|.++.+++.....+..++. .+++|+++||||.+|++|+|+||+++++++++.+...... ++
T Consensus 178 ~~~~-~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~--~~ 252 (359)
T PRK03158 178 ESVP-S-HVLVVLDEAYYEYVTAEDYPDTLPLLEK-YENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP--FN 252 (359)
T ss_pred HhCC-C-CcEEEEECchHhhcCCcccccHHHHHHh-cCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC--CC
Confidence 8874 7 8999999999998876432233233333 5789999999999999999999999999999999877653 56
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
++.+.|.++..+|++ .+++++.++.++++++.+.+.|.+. |+.+.+ .+|+|+|++++. +..
T Consensus 253 ~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~-~~g~~i~~~~~~-------------~~~ 313 (359)
T PRK03158 253 TTRIAQYAAIAALED----QAFLKECVEKNAEGLEQYYAFCKEY-GLFYYP-SQTNFIFVDTGR-------------DAN 313 (359)
T ss_pred CCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeeCC-CcCcEEEEECCC-------------CHH
Confidence 899999999999975 6788888888999999999999888 777764 457789998852 577
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
++++.|+++ ||.+.||..|+.++++||+++ +.+++++++++|+++
T Consensus 314 ~~~~~l~~~-gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 314 ELFEALLKK-GYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHHHHC-CeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 899988764 999999999987899999998 566788888888765
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=380.26 Aligned_cols=349 Identities=19% Similarity=0.250 Sum_probs=274.1
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHH----cCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC---CCcEEEecChHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIR----EGFTRYTPNAGTLELRSAICHKLKEENGLSYT---PDQILVSNGAKQSILQ 169 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~---~~~i~it~g~~~al~~ 169 (470)
++.+.|.-.-+..+.+.+++.+.+. ...++|++++|.++||+++++++.+..+. .. .++|++|+|+++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~-~~~~~~~~I~it~G~~~al~~ 84 (388)
T PRK08637 6 YNATIGMATEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPS-LSGKKMSLPIVTNALTHGLSL 84 (388)
T ss_pred eecceeeEecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCcc-ccccccceeeEccchHHHHHH
Confidence 5555554322222233334433333 34688999999999999999999875432 33 2689999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCCCcccCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPtG~~~ 244 (470)
++.++++|||.|++++|+|+.|...+. ..|++++.+|+..+ ++++|++.+++.++ +..+++++++||||||.++
T Consensus 85 ~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~ 163 (388)
T PRK08637 85 VADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTP 163 (388)
T ss_pred HHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC
Confidence 999999999999999999999998765 68999999998422 34589999998876 3445566799999999999
Q ss_pred CHHHHHHHHHHHHh-----CCCEEEEEeccccccccCCCCcccc-cccCCCCCce--EEEeccCcccccccceeeEEEcC
Q 012124 245 PKNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSF-ASLPGMWERT--LTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 245 s~~~~~~l~~~~~~-----~~~~~iI~Dd~~~~~~~~~~~~~~~-~~~~~~~~~~--i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
|.+++++|+++|++ | +++||+||+|.++.|++...+++ ..+.+..+++ ++++||||.+++||+|+||++++
T Consensus 164 s~~~~~~l~~~~~~~~~~~~-~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 164 TEKEATAIVEAIKELADAGT-KVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred CHHHHHHHHHHHHHHHhcCC-cEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 99999999998875 8 99999999999999876544443 2333334575 45679999998999999999854
Q ss_pred ------HHHHHHHHHHh----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCCeec
Q 012124 317 ------KHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMS 383 (470)
Q Consensus 317 ------~~~~~~l~~~~----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~ 383 (470)
+++++.+.+.. .....++|.+.|.++..+|.++.+ ..++++.+..++++++.+.+.|++. +++.+.
T Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~ 321 (388)
T PRK08637 243 TKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAY 321 (388)
T ss_pred cccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Confidence 67777775421 223347899999999999987654 6677888888999999999988764 257888
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
+|.+|||+|+++++. ++.+++++|++++||.+.+. .++++||+++. +++++++++++|+++++
T Consensus 322 ~~~~g~~~~~~l~~~------------~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 322 PFNSGYFMCLKLKGV------------DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELFDSIYKAIK 385 (388)
T ss_pred cccceEEEEecCChH------------HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHHHHHHHHHH
Confidence 899999999999743 67889998877779988752 35789999998 89999999999999998
Q ss_pred hhC
Q 012124 463 TLR 465 (470)
Q Consensus 463 ~~~ 465 (470)
+++
T Consensus 386 ~~~ 388 (388)
T PRK08637 386 DLR 388 (388)
T ss_pred hcC
Confidence 654
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=375.13 Aligned_cols=328 Identities=20% Similarity=0.299 Sum_probs=269.4
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++|+|+.|.+++.+|+.+++++.+.+.. ...|+++ +..+||++|++++ + +++++|++|+|++++|.+++++
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~-~~~Y~~~-~~~~Lr~aia~~~----~--v~~~~I~it~G~~~~i~~~~~~ 93 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSALSA-LRHYPDP-DYRELRLALAQHH----Q--LPPEWILPGNGAAELLTWAGRE 93 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHHHH-hhcCCCc-CHHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHHH
Confidence 36799999999999999999998887764 6779654 5689999999998 3 6889999999999999999988
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCC---ccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF---LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+. +||.|++++|+|+.+...++..|++++.++++.++++ ..+++.+++.. ++++++++++||||||.+++. +
T Consensus 94 l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~---~ 168 (360)
T PRK07392 94 LA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSR---E 168 (360)
T ss_pred hC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCH---H
Confidence 65 7899999999999999999999999999999766554 34667776553 467889999999999999995 4
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|.++++++ ++ +|+||+|.+|.+++. ..++.......+++|+++||||.||++|+|+||+++++++++.+.+...
T Consensus 169 ~l~~l~~~~-~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~-- 243 (360)
T PRK07392 169 AILPLLEQF-AL-VVVDEAFMDFLPPDA-EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD-- 243 (360)
T ss_pred HHHHHHHHC-CE-EEEECchhhhccCcc-ccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC--
Confidence 566667788 86 555999999987653 2333222223578999999999999999999999999999998876553
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++.+.|.++..+|++ ..+.+..++.++++++.+.+.|++++|+.+. +.+++|+|++++.
T Consensus 244 ~~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~------------- 305 (360)
T PRK07392 244 PWPVNGLAAAAAIAALAD----RDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG------------- 305 (360)
T ss_pred CCCCCHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC-------------
Confidence 456899999999999985 5677777888999999999999988888775 4778899998863
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecC--HHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAAS--LTTLQAAVERI 457 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~--~~~i~~~l~~l 457 (470)
++.++++++++++||.+.||..|+. ++++||+++.. .+++.++++++
T Consensus 306 ~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~ 356 (360)
T PRK07392 306 SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI 356 (360)
T ss_pred CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 5678888877777999999999964 47999999983 35666666654
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=370.59 Aligned_cols=365 Identities=26% Similarity=0.406 Sum_probs=302.0
Q ss_pred cCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCC
Q 012124 74 VKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
+++.....+........ ++.++|+|+.|.+.+++++.+.+++.+.+... ...|+++.|.++||+++++++ | +
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l----~--~ 81 (380)
T PRK06225 9 VPPSGFKTSNEFFDYVF-KDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL----G--L 81 (380)
T ss_pred cCcchhhhHHHHHHHHh-hcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc----C--C
Confidence 34443334433333332 34579999999999988999999999998753 567988899999999999986 4 5
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCCCccCHHhHhhhccCCceEE
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTEKSRLL 231 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~i 231 (470)
++++|++|+|+++++..++.+++.+||+|++++|+|..+...++..|++++.++++. ++++.+|++.+++.++++++++
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v 161 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLI 161 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCceEE
Confidence 778999999999999999999999999999999999999999999999999999853 3467899999999998899999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceee
Q 012124 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 232 ~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
++++|+||||.++|.+++++|+++|+++ |++||+||+|.+|..+. .+...++ .++++++.||||.+|++|+|+|
T Consensus 162 ~l~~p~NptG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~---~~~~~~~--~~~~i~~~s~SK~~g~~G~RiG 235 (380)
T PRK06225 162 YLIDPLNPLGSSYTEEEIKEFAEIARDN-DAFLLHDCTYRDFAREH---TLAAEYA--PEHTVTSYSFSKIFGMAGLRIG 235 (380)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHC-CcEEEEehhHHHHhccC---CchhhcC--CCCEEEEeechhhcCCccceeE
Confidence 9999999999999999999999999999 99999999998865432 2222333 3789999999999998999999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCCceEE
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFY 390 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~ 390 (470)
|+++++++++.+..... ...+.+.+.|.++...+.. ...+.+++++.++++++.+.+.|++++|+.+ ..|.+|+|
T Consensus 236 ~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 311 (380)
T PRK06225 236 AVVATPDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV---KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNM 311 (380)
T ss_pred EEecCHHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeE
Confidence 99999999998877643 4567889999999888875 3677888888899999999999988767543 24556777
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+|++++... .+..++++.|.+ +||.+.||..|+. ++++|++++.+++++++++++|+++++++++
T Consensus 312 ~~~~~~~~~----------~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 312 MVIDISEAG----------IDPEDLVEYLLE-RKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred EEEEccccc----------CCHHHHHHHHHH-CCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence 899986420 167889988875 5999999976643 4699999999999999999999999998774
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=375.63 Aligned_cols=333 Identities=23% Similarity=0.319 Sum_probs=276.6
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.+.++|+|+.|.|++.+++.+.+++.+... ....|++..|. +||+++++++ | +++++|++|+|+++++..++
T Consensus 34 ~~~~~i~l~~~~~~~~~~~~~~~al~~~~~-~~~~Y~~~~g~-~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~ 105 (371)
T PRK05166 34 GVPRIAKLGSNENPLGPSPAVRRAFADIAE-LLRLYPDPQGR-ALREAIAART----G--VPADRIILGNGSEDLIAVIC 105 (371)
T ss_pred CCcceEEcCCCCCCCCCCHHHHHHHHHHHH-HhhcCCCCcHH-HHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 345789999999988888889998887543 36789888884 9999999986 3 47889999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
.+++++||.|++++|+|+.+...++..|++++.++++. ++++|++.+++.++++++++++++||||||.++|.+++++
T Consensus 106 ~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 183 (371)
T PRK05166 106 RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLAR 183 (371)
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999864 3569999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccc-cCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~ 329 (470)
|+++|+ + +++||+||+|.++.+++. .+++.. +....+++|+++||||.||++|+|+||+++ ++++++.+.+.+.
T Consensus 184 l~~~~~-~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~- 259 (371)
T PRK05166 184 VLDATP-P-ETLIVVDEAYAEYAAGDD-YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT- 259 (371)
T ss_pred HHHhCC-C-CcEEEEECcHHHhcCCcC-cccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc-
Confidence 999986 4 688999999999886432 233322 333246899999999999999999999775 7888888877654
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
.++++.+.|.++..++.+ .+++++.++.++++++.+.+.|++. |+.+. |.+|+|+|++++.
T Consensus 260 -~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~------------ 320 (371)
T PRK05166 260 -PFNVNGAAQAAALAALDD----EEHLAKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDARR------------ 320 (371)
T ss_pred -CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCC------------
Confidence 356899999888888874 6789999999999999999999988 77764 5667889998753
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
++.++++.|+++ ||.+.||..++.++++||+++.. ++.+.+++.|+.+
T Consensus 321 -~~~~l~~~l~~~-gi~v~p~~~~~~~~~iRi~~~~~-~~~~~l~~~l~~i 368 (371)
T PRK05166 321 -PASAVAEALLRQ-GVIVKPWKQPGFETFIRVSIGSP-EENDHFVAALDKV 368 (371)
T ss_pred -CHHHHHHHHHHC-CeEEecCCCCCCCCeEEEEcCCH-HHHHHHHHHHHHH
Confidence 567899988865 99999998777789999999972 3344444444433
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=370.51 Aligned_cols=334 Identities=19% Similarity=0.265 Sum_probs=275.7
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
++.++++|+.|+|++++|+.+.+++.+.+.. ...|+ ..+..+||++|++++ + +++++|++|+|+++++..++
T Consensus 18 ~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~~~y~-~~~~~~lr~~ia~~~----~--~~~~~i~it~Ga~~~l~~~~ 89 (356)
T PRK08056 18 SPDQLLDFSANINPLGMPVSLKRAIIDNLDC-AERYP-DVEYRHLHQALARHH----Q--VPASWILAGNGETESIFAVV 89 (356)
T ss_pred ChhhEEEeccccCCCCCCHHHHHHHHHHHHh-cccCc-CccHHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHH
Confidence 4567899999999999999999999887754 45684 457899999999996 3 57899999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
.++ .+|+ +++.+|+|..+...++..|++++.+|++.++++.+| +.+++.+.++++++++++||||||.+++.+++++
T Consensus 90 ~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~ 166 (356)
T PRK08056 90 SGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQA 166 (356)
T ss_pred HHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHH
Confidence 886 6776 677899999999999999999999999766677677 4455666788999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~ 330 (470)
|+++|+++ +++||+||+|.++.+++....+. +.. .+++++++||||.+|++|+|+||++++ +++++.+.+...
T Consensus 167 i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~--~~~-~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~-- 240 (356)
T PRK08056 167 IAERCKSL-NIALILDEAFIDFIPDETGFIPQ--LAD-NPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQM-- 240 (356)
T ss_pred HHHHHHhc-CCEEEEecchhccCCcchHHHHH--hcc-CCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCC--
Confidence 99999999 99999999999987754322222 222 468999999999999999999999984 678787776543
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++.+.|.++..+++. ..+.+++++.++++++.+.+.|++++++.+.++ +++|+|++++.
T Consensus 241 ~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~------------- 302 (356)
T PRK08056 241 PWSINAFAALAGEVILQD----RAYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCER------------- 302 (356)
T ss_pred CCchhHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCC-------------
Confidence 456788899988888864 678888999999999999999998888877655 57889999874
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|++ +||.+.+|..|.. ++++||+++. .++.+.+++.|+++++
T Consensus 303 ~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 303 PDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIRS-AAENERLLAALRNVLT 354 (356)
T ss_pred ChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEcC-HHHHHHHHHHHHHHHc
Confidence 45678888876 5999999998843 4699999985 4566677777766643
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=372.75 Aligned_cols=334 Identities=26% Similarity=0.378 Sum_probs=280.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
..++|+.|+|++++|+.+++++.+.+.. ....| +..|.++||++|++|+.+.+|+++++++|++|+|+++++.+++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~ 105 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLL 105 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHH
Confidence 3599999999999999999999988753 35678 5578999999999999998898899999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+++++|||.|++++|+|+.+...++..|.+++.++.+ +++++|++.++++++ ++++++++++||||||.+++.++++
T Consensus 106 ~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~ 183 (368)
T PRK03317 106 QAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVE 183 (368)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999988864 457799999999986 4789999999999999999988777
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++| +++||+||+|.+|.+.+. .+...+.+..+++|+++||||.+|++|+|+||+++++++++.+.....
T Consensus 184 ~l~~~~----~~~lI~DE~y~~~~~~~~--~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~-- 255 (368)
T PRK03317 184 AILDAA----PGIVVVDEAYAEFRRSGT--PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL-- 255 (368)
T ss_pred HHHHHC----CceEEEeCCchhhcccCC--cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC--
Confidence 777655 589999999999876542 232233222468999999999999899999999999999999887653
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++.+++.|.++.++|+. .+...+.++.++++++.+.+.|++. |+.+..+.++|++|.+++
T Consensus 256 ~~~~s~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-------------- 316 (368)
T PRK03317 256 PYHLSAVTQAAARAALRH----ADELLASVAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA-------------- 316 (368)
T ss_pred CCCCCHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC--------------
Confidence 457899999999999975 3334455567888999999999887 888888899998886653
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+..++.+.|+++ ||.+.+. +.++++|++++ +.++++.+++.|+++++.
T Consensus 317 ~~~~~~~~l~~~-Gv~v~~~---~~~~~iRi~~~-~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 317 DRHAVWQGLLDR-GVLIRDV---GIPGWLRVTIG-TPEENDAFLAALAEVLAT 364 (368)
T ss_pred CHHHHHHHHHHC-CEEEEeC---CCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 567788887754 9999874 44689999998 456789999999888754
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=370.83 Aligned_cols=328 Identities=24% Similarity=0.301 Sum_probs=272.1
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.+.++|+|+.|++++++|+.+.+++.+.. ....| +..+..+||++|++++. +++++|++|+|+++++..++
T Consensus 50 ~~~~~i~l~~n~~p~~~~~~v~~a~~~~~--~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~~t~Ga~~~i~~~~ 120 (380)
T PLN03026 50 KPEDIVKLDANENPYGPPPEVLEALGNMK--FPYVY-PDPESRRLRAALAEDSG------LESENILVGCGADELIDLLM 120 (380)
T ss_pred CccceEEccCCCCCCCCCHHHHHHHHhhH--hhccC-CCCCHHHHHHHHHHHhC------cChhhEEEcCCHHHHHHHHH
Confidence 35688999999999988888888876531 23457 45678999999999973 57899999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
.+++++||+|++++|+|+.|...++..|++++.++.+ +++.+|++.+++++ ++++++|++++||||||.+++.++++
T Consensus 121 ~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~ 198 (380)
T PLN03026 121 RCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLL 198 (380)
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999985 35679999999998 67899999999999999999988887
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++ .++||+||+|.+|.+.+. ....+. ..+++|+++||||.||++|+|+||+++++++++.+.+.+..
T Consensus 199 ~l~~~-----~~~vi~DeaY~~~~~~~~---~~~~~~-~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~- 268 (380)
T PLN03026 199 KILEL-----PILVVLDEAYIEFSTQES---RMKWVK-KYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP- 268 (380)
T ss_pred HHHhc-----CCEEEEECcchhhcCCcc---hHHHHH-hCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCC-
Confidence 77753 379999999999876431 112222 25899999999999999999999999999999999887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
++.+.+.|.++.++|++ .+++++.++.++++++.+.+.|++++++.+ .|.+++|+|+++++..
T Consensus 269 -~~~~~~~q~aa~~aL~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~----------- 331 (380)
T PLN03026 269 -YNVSVAAEVAACAALSN----PKYLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGR----------- 331 (380)
T ss_pred -CCCCHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCC-----------
Confidence 45889999999999975 678899999999999999999998854555 5677888999987532
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+..++++.|++ +||.+.++..++.++++||+++. .++++.+++.|++
T Consensus 332 ~~~~~~~~l~~-~gI~v~~~~~~~~~~~lRis~~~-~~~~~~l~~al~~ 378 (380)
T PLN03026 332 DAKKLKEDLAK-MGVMVRHYNSKELKGYIRVSVGK-PEHTDALMEALKQ 378 (380)
T ss_pred CHHHHHHHHHH-CCeEEEECCCCCCCCEEEEecCC-HHHHHHHHHHHHH
Confidence 67889988885 59999998776667899999995 3455555555543
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=367.80 Aligned_cols=328 Identities=21% Similarity=0.333 Sum_probs=274.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++|+|+.|+|++++++.+.+++.+.+......|+ +.|..+||++|++++. +++++|++|+|++++|.+++++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~aia~~~~------~~~~~I~it~G~~~al~~~~~~ 96 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQAIAAYYG------LDPEQVFVGNGSDEVLAHAFLA 96 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHH
Confidence 46799999999998888999999988776667885 4577999999999973 6889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+++|||+|++++|+|+.+...++..|++++.++++ +++.+|++.+++ .++++++++||||||.++|.+++++|+
T Consensus 97 l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~ 170 (353)
T PRK05387 97 FFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERIL 170 (353)
T ss_pred hcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999985 346799999874 457889999999999999999999998
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc-cC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-TS 332 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-~~ 332 (470)
+++ + +++||+||+|.++ .+....++. . ..+++++++||||.+|++|+|+||+++++++++.+....... .+
T Consensus 171 ~~~--~-~~~livDe~y~~~--~~~~~~~~~--~-~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~ 242 (353)
T PRK05387 171 AAN--P-DSVVVIDEAYVDF--GGESAIPLI--D-RYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSY 242 (353)
T ss_pred HhC--C-CcEEEEeCccccc--CCcchHHHH--h-hCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCC
Confidence 864 4 7999999999875 332222222 2 247899999999999999999999999999999998876543 45
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++..++.+ .++.++.++.++++++.+.+.|+++ |+.+. |.+++|+|++++.. ++
T Consensus 243 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~ 304 (353)
T PRK05387 243 PLDRLAQAGAIAAIED----EAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSH------------DA 304 (353)
T ss_pred CcCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC------------CH
Confidence 6889999999999874 5678888999999999999999988 78765 55677899998753 67
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.++++.|.++ ||.+.+......++++|++++ +++++++++++|++++.
T Consensus 305 ~~~~~~l~~~-gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 305 AELAAKLRER-GIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 8899988655 999975332233579999998 56889999999998765
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=367.03 Aligned_cols=337 Identities=23% Similarity=0.301 Sum_probs=282.9
Q ss_pred cCCC-eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 92 AGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~-~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.|.+ .++|+.|+|++++|+.+.+++.+... ....|+++ +..+||++|++++ + +++++|++|+|+++++..+
T Consensus 29 ~g~~~~~~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~-~~~~Lr~~ia~~~----~--~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 29 RGRPFRARIGANESGFGPSPSVIAAMREAAA-EIWKYGDP-ENHDLRHALAAHH----G--VAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred cCCcceeEecCCCCCCCCCHHHHHHHHHHHH-HhhcCCCC-ccHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHH
Confidence 4554 46999999999999999999888764 34678655 5899999999997 3 5889999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
+.++++|||.|++++|+|+.+...++..|++++.+|++.+ .+|++.+++.+ +++++++++++||||||.++|.+++
T Consensus 101 ~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l 177 (369)
T PRK08153 101 VRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADI 177 (369)
T ss_pred HHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999998543 37999998776 4688999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 329 (470)
++|+++|+ + +++||+||+|.++.+++. ..+ +....+++|+++||||.+|+||+|+||+++++++++.+.+....
T Consensus 178 ~~l~~~~~-~-~~~lI~DE~y~~~~~~~~-~~~---~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~ 251 (369)
T PRK08153 178 VAFIEALP-E-TTLLVLDEAYCETAPAGA-APP---IDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH 251 (369)
T ss_pred HHHHHhCC-C-CcEEEEeCchhhhcCccc-chh---hhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcC
Confidence 99999886 6 789999999999877542 222 22224689999999999999999999999999999999887654
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
++.+.+.|.++..+|++ .+++++.++.++++++.+.+.|++. |+.+. |.+++|+|++++...
T Consensus 252 --~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~---------- 313 (369)
T PRK08153 252 --FGMNRIAQAAALAALKD----QAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDG---------- 313 (369)
T ss_pred --CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCc----------
Confidence 56899999999999974 6788899999999999999999877 77654 677888999885310
Q ss_pred CCHHHHHHHHHHcCCEEEE-CCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 410 ENSESLCRYLLDKAQVALV-PGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~-pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
....++.++|.++ ||.+. |+.. ..++++|++++ ++++++.+++.|+++++.+++
T Consensus 314 ~~a~~l~~~l~~~-Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 314 AFARAVLDGLIAR-DIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred ccHHHHHHHHHHC-CeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhhc
Confidence 1567888888765 99995 6643 23579999999 678999999999999887664
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=366.94 Aligned_cols=336 Identities=25% Similarity=0.409 Sum_probs=286.7
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.+.++++|+.|.+++.+++.+.+++.+.+.. ...|++.. ..+||+++++++ | +++++|++|+|+++++..++
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~~~-~~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~ 101 (367)
T PRK02731 30 GIADIIKLASNENPLGPSPKAIEAIRAAADE-LHRYPDGS-GFELKAALAEKF----G--VDPERIILGNGSDEILELLA 101 (367)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHh-hcCCCCCc-HHHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 5668899999998888888899999888754 67786544 479999999987 3 57789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
.+++++||+|++++|+|..+...++..|++++.++. +++++|++.+++.+++++++|++++||||||.+++.+++++
T Consensus 102 ~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 178 (367)
T PRK02731 102 RAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVER 178 (367)
T ss_pred HHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHH
Confidence 999999999999999999998888999999999997 34669999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
+++.|+ + +++||+||+|.++.+++....++..++ ..+++++++||||.+|++|+|+||+++++++++.+.+....
T Consensus 179 l~~~~~-~-~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~-- 253 (367)
T PRK02731 179 FLAGVP-P-DVLVVLDEAYAEYVRRKDYEDGLELVA-KFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQP-- 253 (367)
T ss_pred HHHhCC-C-CcEEEEECcHHHhccCcCcccHHHHHh-hcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCC--
Confidence 999875 7 899999999999887553333332232 25789999999999998999999999999999998876653
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
++.+.+.|.++..+|++ ..++++.++.++++++.+.+.|++. |+.+. +.+|+|+|++++... +
T Consensus 254 ~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~-----------~ 316 (367)
T PRK02731 254 FNVNSLALAAAVAALDD----DAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGK-----------D 316 (367)
T ss_pred CCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCC-----------C
Confidence 45688999999999974 6788999999999999999999988 78776 455788999996542 7
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+.++++.|.++ ||.+.|+..|+.++++|++++ +.++++.+++.|+++++
T Consensus 317 ~~~~~~~L~~~-gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 317 AAEAYQALLKR-GVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKEFLA 365 (367)
T ss_pred HHHHHHHHHHC-CEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHHHh
Confidence 78899988765 999999998876789999998 56788999999988765
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=361.48 Aligned_cols=325 Identities=20% Similarity=0.271 Sum_probs=273.0
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++++|+.|+|++++|+.+.+++.+.+.. ...|+++ +..+||++|++++ | +++++|++|+|+++++.+++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~~-~~~~Lr~aia~~~----~--v~~e~I~it~Gs~~ai~~~~~~ 114 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAAL-SGRYDLE-LEDDLRTLFAAQE----G--LPADHVMAYAGSSEPLNYAVLA 114 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCc-hHHHHHHHHHHHh----C--cChhhEEEcCChHHHHHHHHHH
Confidence 35799999999999999999999887753 3568544 5899999999875 4 5889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
++++||+|++++|+|+.+...++..|++++.++.+. ++.+|++.+++. .++++++++++||||||.++|.+++++++
T Consensus 115 l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~ 191 (370)
T PRK09105 115 FTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLL 191 (370)
T ss_pred HcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 999999999999999999999999999999999864 466899999887 45789999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
+.+ ++ +++||+||+|.+|... ++..++....+++++++||||.+|++|+|+||+++++++++.+... ....
T Consensus 192 ~~~-~~-~~~lIvDEaY~~f~~~----~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~---~~~~ 262 (370)
T PRK09105 192 ANK-PA-GSVLLVDEAYIHFSDA----PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF---GHNP 262 (370)
T ss_pred HhC-CC-CcEEEEECchHHhccC----cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc---CCCC
Confidence 975 56 8999999999875421 2333443335789999999999999999999999999999988776 2344
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
.+.+.|.++..+|.+ .+|+++.++.++++++.+.+.|+++ |+.+.++.++|| |++++. +..
T Consensus 263 ~~~~~~~aa~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~-~~~~~~-------------~~~ 323 (370)
T PRK09105 263 LPVPAAAAGLASLRD----PKLVPQRRAENAAVREDTIAWLKKK-GYKCTPSQANCF-MVDVKR-------------PAK 323 (370)
T ss_pred cCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCCcEE-EEeCCC-------------CHH
Confidence 788889999988875 6789999999999999999999987 888888888876 567752 678
Q ss_pred HHHHHHHHcCCEEEECCCCCC-CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f~-~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
++++.|+++ ||.+ |..|. .++++|++++. +++++.+++.|++++
T Consensus 324 ~l~~~L~~~-gI~v--~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 324 AVADAMAKQ-GVFI--GRSWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHC-CcEE--ecCCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence 899999876 9988 33453 36899999995 566788887777665
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=359.40 Aligned_cols=327 Identities=22% Similarity=0.374 Sum_probs=272.5
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
+.++++|+.|+|++++|+.+++++.+.+.. ....|++ .|..+||+++++++. .. ..++|++|+|+++++.+++
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~----~~-~~~~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG----VP-AGADVLLGNGSDELIQLLA 98 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC----cC-CCCcEEEcCCHHHHHHHHH
Confidence 347899999999999999999999998864 4577855 688999999999973 32 2358999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
.+++++||+|++++|+|+.+...++..|++++.+++++ ++.+|++.+++++. .+++++++++||||||.++|.++++
T Consensus 99 ~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~ 176 (356)
T PRK04870 99 LACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVE 176 (356)
T ss_pred HHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999863 46799999999985 5899999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++| + .++|+||+|.+|.+.. ..+ .+.. .+++++++|||| ++++|+|+||+++++++++.+...+.
T Consensus 177 ~i~~~~--~--~~ii~De~y~~~~~~~-~~~---~~~~-~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~-- 244 (356)
T PRK04870 177 RIIEAA--P--GLVVVDEAYQPFAGDS-WLP---RLAR-FPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRP-- 244 (356)
T ss_pred HHHHHC--C--CEEEEECCchhhcCcc-hHH---HHhh-CCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccC--
Confidence 999988 4 4788899999875431 111 1222 468999999999 78899999999999999999887663
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++.+.+.|.++..++++ .+++++.++.++++++.+.+.|++++|+.+. +.+|+|+|++++
T Consensus 245 ~~~~~~~~q~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-------------- 305 (356)
T PRK04870 245 PYNVNVLTQATALFALEH----VDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP-------------- 305 (356)
T ss_pred CCcCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------
Confidence 345888999998888874 4568888899999999999999988888765 556778999886
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
+..++.+.|. ++||.|.||..|+. ++++|++++. .++++.+++.|+++
T Consensus 306 ~~~~~~~~l~-~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~al~~~ 355 (356)
T PRK04870 306 DAAAVFDGLK-TRGVLVKNLSGMHPLLANCLRVTVGT-PEENAQFLAALKAA 355 (356)
T ss_pred CHHHHHHHHH-HCCEEEEECCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHHh
Confidence 3456777665 55999999998853 5799999995 56677777777654
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=341.70 Aligned_cols=332 Identities=23% Similarity=0.288 Sum_probs=275.6
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHcC-CCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEE
Q 012124 124 FTRYTPNAGTLELRSAICHKLKEENG-LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 202 (470)
Q Consensus 124 ~~~y~~~~g~~~lr~~ia~~l~~~~g-~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 202 (470)
.++|++..|.++|+..|.++....+. ....+-+|++|+|.+++++.+++.++++||.|+++.++|++.....+..|+++
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ 172 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKI 172 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceE
Confidence 47899999999999999997652232 23344599999999999999999999999999999999999999999999999
Q ss_pred EEecCcCCCCCccCHHhHhhhccC---------CceEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc
Q 012124 203 VILPTRISENFLLDPKVLESKLTE---------KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272 (470)
Q Consensus 203 ~~v~~~~~~~~~~d~~~l~~~l~~---------~~~~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~ 272 (470)
++|+++.++ +++|.|++.+.. ++++++ |++.|||||.+++.+++++|.++|++| |++||+||.|..
T Consensus 173 ipv~md~~G---i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy-DfLIVeDdpYy~ 248 (472)
T KOG0634|consen 173 IPVKMDQDG---IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY-DFLIVEDDPYYF 248 (472)
T ss_pred EeccccCCC---CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc-CEEEEecCccce
Confidence 999996544 999999998842 356665 477799999999999999999999999 999999999999
Q ss_pred cccCCC--------C-----------cccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 273 IIYAPA--------T-----------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 273 ~~~~~~--------~-----------~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
+.|+.. + .+++.+++- .+|||.+.||||.++ ||+|+||+.+++.+++++.......+.+
T Consensus 249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDt-dGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~ 326 (472)
T KOG0634|consen 249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDT-DGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSG 326 (472)
T ss_pred eeccccCCCccccCccccHHHHHHhhcCCcccccc-cccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcceeecC
Confidence 888621 1 133444554 699999999999998 9999999999999999998888888888
Q ss_pred CChHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHhcc-CCC--CeecCCCceEEEeeeccCccCCcccCCCC
Q 012124 334 ASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGE-LEG--VKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~-~~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (470)
++.+.|.++.+.|+.+.. ..+|+.+++..|..|++.+..+|.+ +|+ +++.+|.+|||+|+++|..- ......
T Consensus 327 pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~---~~~~~~ 403 (472)
T KOG0634|consen 327 PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYIN---FDTKKS 403 (472)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccc---cccccc
Confidence 999999999999886421 1388999999999999999999988 564 57889999999999998210 000000
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCCC------C-cEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 409 IENSESLCRYLLDKAQVALVPGDAFGDD------T-CIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 409 ~~~~~~l~~~L~~~~gI~v~pg~~f~~~------~-~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
....+++...++.+.||.+.+|..|... . ++|++++. +.++++++++||..++++.
T Consensus 404 i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 404 INQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred hHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 1125566666667779999999999632 2 89999998 8899999999999999875
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=353.03 Aligned_cols=324 Identities=23% Similarity=0.393 Sum_probs=264.1
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
..++|+.|+|++++|+.+++++.+.+.. ....|++ .+..+||+++++++ + +++++|++|+|+++++..++.+
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~----~--~~~~~i~it~G~~~~l~~~~~~ 95 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYC----S--VVPTNIFVGNGSDEIIHLIMLA 95 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHh----C--CCcccEEEecCHHHHHHHHHHH
Confidence 4589999999999999999999887764 4567854 45789999999996 3 5789999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
++++||+|++++|+|+.+...++..|++++.++++. ++.+|++.+++++++ +++++++++||||||.+++.++++++
T Consensus 96 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l 173 (351)
T PRK14807 96 FINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKE--DYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKI 173 (351)
T ss_pred hcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999863 466999999999965 89999999999999999996666555
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+ +++ +.++|+||+|.++ ++ ....++ ++ ..+++|+++||||.+|+||+|+||+++++++++.+...+.. +
T Consensus 174 ~---~~~-~~~~ivDe~y~~~-~~-~~~~~~--~~-~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~--~ 242 (351)
T PRK14807 174 I---EKS-RGIVVVDEAYFEF-YG-NTIVDV--IN-EFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP--Y 242 (351)
T ss_pred H---HhC-CCEEEEeCcchhh-cc-cchHHH--hh-hCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC--C
Confidence 5 466 6778899999886 32 222222 22 24789999999999999999999999999999999876653 4
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++..++++ .++++..+.++++++.+.+.|++++|+.+.+ .+|+|+|++++ +.
T Consensus 243 ~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~~-~~~~~~~i~~~--------------~~ 302 (351)
T PRK14807 243 NINSLSQVIALKVLRT-----GVLKERVNYILNERERLIKELSKIPGIKVYP-SKTNFILVKFK--------------DA 302 (351)
T ss_pred CcCHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhCCCcEECc-CCccEEEEEcC--------------CH
Confidence 5789999999999974 3556666778888999999998888888754 55778999986 45
Q ss_pred HHHHHHHHHcCCEEEECCCC-CCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDA-FGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~-f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.++++.|+++ ||.+.++.. ++.++++||+++.. ++.+.+++.|+++
T Consensus 303 ~~~~~~l~~~-gV~v~~~~~~~~~~~~iRis~~~~-~~~~~l~~~l~~~ 349 (351)
T PRK14807 303 DYVYQGLLER-GILVRDFSKVEGLEGALRITVSSC-EANDYLINGLKEL 349 (351)
T ss_pred HHHHHHHHHC-CEEEEECCCCCCCCCeEEEEcCCH-HHHHHHHHHHHHh
Confidence 6788877765 999988653 34568999999863 4556666666554
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=351.75 Aligned_cols=324 Identities=18% Similarity=0.300 Sum_probs=264.9
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
+++++||+.|.+++.+|+.+++++.+.+.. ...|+++.|..+||+++++++ | +++++|++|+|+++++.++++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~~----~--~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGD-LAAYPSTEDERRARAAVAARH----G--RTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhH-hhcCCCccchHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHh
Confidence 457899999999999999999999988764 567988889999999999996 3 578999999999999998888
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++| .++++.|+|..+...++..|++++.++++.+ +.+|++.+ +++++++++++||||||.++|.+ +|
T Consensus 94 --l~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~--~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~---~l 161 (349)
T PRK07908 94 --LRPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDPP--FRLDPAAV----PDDADLVVIGNPTNPTSVLHPAE---QL 161 (349)
T ss_pred --cCCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCcc--cCcChhHh----ccCCCEEEEcCCCCCCCCCcCHH---HH
Confidence 4675 5677899999999999999999999999643 67888865 34788999999999999999966 45
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
.++|+ + +.++|+||+|.++.++ ...++...+ .+++++++||||.++++|+|+||+++++++++.+...... +
T Consensus 162 ~~l~~-~-~~~iIvDe~y~~~~~~--~~~~l~~~~--~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~--~ 233 (349)
T PRK07908 162 LALRR-P-GRILVVDEAFADAVPG--EPESLAGDD--LPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAH--W 233 (349)
T ss_pred HHHHh-c-CCEEEEECcchhhccC--Ccccccccc--CCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCC--C
Confidence 56665 4 5678889999987543 234554433 4689999999999999999999999999999998876554 4
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
..+.+.|.++..++... ..++++++++.++++++.+.+.|+++ |+++..|.+|+|+|++++ +.
T Consensus 234 ~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~--------------~~ 296 (349)
T PRK07908 234 PVGTLQLEAIAACCAPR--AVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP--------------DA 296 (349)
T ss_pred CccHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC--------------cH
Confidence 46777787777777632 25788999999999999999999988 888888889999999987 34
Q ss_pred HHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.++.+.| +++||.+.||..|+. +++|||+++ ++++++++++.|++++.
T Consensus 297 ~~~~~~l-~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 297 ELLRKRL-RERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALAEILK 346 (349)
T ss_pred HHHHHHH-HhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHHHHHh
Confidence 5666655 456999999998853 689999997 44577777777776653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=352.89 Aligned_cols=313 Identities=18% Similarity=0.282 Sum_probs=251.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+|+|+.|++++... .....| |..-..+||+++++++. +++++|++|+|++++|.+++. +
T Consensus 17 ~~i~l~~Nenp~~~~------------~~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~it~Gs~~~l~~~~~-~ 76 (332)
T PRK06425 17 RIIDFSANINDFMDI------------GDISIY-PEISYTDIEDQIKIYTQ------GLKIKVLIGPGLTHFIYRLLS-Y 76 (332)
T ss_pred CEEEeccccCCCcCh------------hhcccC-cCcCHHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHH-H
Confidence 579999999877421 124568 55568999999999974 478999999999999999987 4
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
+++|+ |++++|+|+.|...++..|++++.+|++. +++|.+.+++ .+++++++++||||||.++|.+++++|++
T Consensus 77 ~~~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~ 149 (332)
T PRK06425 77 INVGN-IIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISE 149 (332)
T ss_pred hCCCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHH
Confidence 67875 66669999999999999999999999864 3367666653 37899999999999999999999999999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 334 (470)
+|+++ +++||+||+|.+|.+++ .++...+....+++|+++||||.+|+||+|+||+++++++++.+.+....+. .
T Consensus 150 ~a~~~-~~~iI~DE~Y~~~~~~~--~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~~--~ 224 (332)
T PRK06425 150 ICRKK-GALLFIDEAFIDFVPNR--AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPWS--V 224 (332)
T ss_pred HHHHc-CCEEEEecchhcccccc--chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCCc--c
Confidence 99999 99999999999988753 2234444333579999999999999999999999999999999887554332 3
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+.+. ..++..+.. +.++++.++.|+++++.+.+.|+++ |+.+..+.+|+|+|+++| ++.+
T Consensus 225 ~~~~----~~~l~~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--------------~~~~ 284 (332)
T PRK06425 225 CDPA----IDFIRSIDL-DYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--------------DAHD 284 (332)
T ss_pred CHHH----HHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--------------CHHH
Confidence 3333 333433332 6678889999999999999999988 787765556778999886 4678
Q ss_pred HHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 415 LCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+++.|+++ ||.+.||..|+. ++++||+++.. ++++.+++.|++++
T Consensus 285 ~~~~l~~~-gi~v~~~~~f~~~~~~~iRis~~~~-~~~~~l~~al~~~~ 331 (332)
T PRK06425 285 FYSYLLKN-GILVRLLDDYECLGEQYIRIAIRRR-SFNIKLVNALRNFL 331 (332)
T ss_pred HHHHHHHC-CeEEEECCCCCCCCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 88888865 999999999853 47999999964 57788888887765
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=345.38 Aligned_cols=330 Identities=28% Similarity=0.427 Sum_probs=283.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++++|+.|++++++|+.+.+++.+.+. ....| |.....+|++++++++. . .++++|++++|+++.|.++++++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~~~rY-Pd~~~~~l~~a~a~~~~----~-~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD-KLNRY-PDPDYRELRAALAEYYG----V-VDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH-hhccC-CCCcHHHHHHHHHHHhC----C-CCcceEEEcCChHHHHHHHHHHh
Confidence 479999999999999999999988876 47789 55588999999999974 2 57899999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
+.|||.|++..|+|..|...++..|++++.++..+ |.+|+|.+.+++.+++++|++||||||||..++.++++++++
T Consensus 96 ~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 96 VEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred hcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999863 779999999999889999999999999999999999999999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 334 (470)
.+.+ +.+||+||+|.+|.- .+...+....+++++++||||.||++|+|+||+++++++++.+.+.+..++ .
T Consensus 173 ~~~~--~~~vVvDEAY~eF~~-----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~--v 243 (356)
T COG0079 173 ALPE--GGLVVIDEAYIEFSP-----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN--V 243 (356)
T ss_pred hCCC--CcEEEEeCchhhcCC-----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCC--C
Confidence 8875 478888999999653 222222223678999999999999999999999999999999999987665 8
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
|.+++.++.+++++ .+++++.++...+.|+++.+.|++++ +. +.++. +.|+++++++. ...
T Consensus 244 ~~~a~~aa~aal~~----~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~-aNFvlv~~~~~------------~~~ 305 (356)
T COG0079 244 SSPALAAAIAALRD----ADYLEESVERIREERERLYAALKALG-LFGVFPSQ-ANFVLVRVPDA------------EAA 305 (356)
T ss_pred CHHHHHHHHHHccc----HHHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCC-CcEEEEECCCc------------cHH
Confidence 99999999999986 68999999999999999999999984 55 55444 66689898752 345
Q ss_pred HHHHHHHHcCCEEEECCCC-CCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 414 SLCRYLLDKAQVALVPGDA-FGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~-f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.+.+.|+++ ||.++.... ...++++|++++..++. +.+++.|+++++.
T Consensus 306 ~l~~~L~~~-giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~ 354 (356)
T COG0079 306 ALAEALLKK-GILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG 354 (356)
T ss_pred HHHHHHHHC-CEEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence 788888776 999999765 23467999999976554 8889988888754
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=353.14 Aligned_cols=324 Identities=24% Similarity=0.380 Sum_probs=260.7
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
.++++.+++.+.+++.. ......|+++ +..+||++|++++ | +++++|++|+|++++|.+++.+++
T Consensus 33 ~~~~~~ne~~~~~~~~~--------~~~~~~Y~~~-~~~~lr~~ia~~~----~--~~~~~I~~t~G~~~~l~~~~~~~~ 97 (364)
T PRK04781 33 DVWLNANESAWANPADP--------DASTRRYPDP-QPPGLRSALAALY----G--CAPEQLLIGRGSDEAIDLLVRALC 97 (364)
T ss_pred CEEeeCCCCCCCCChhh--------cchhccCCCC-CHHHHHHHHHHHh----C--cChHHEEEeCCHHHHHHHHHHHhc
Confidence 47888888877765421 1125668554 5799999999997 3 578999999999999999999999
Q ss_pred CCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 176 SPG-DEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 176 ~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
.+| |.|++++|+|..+...++..|++++.+|++. ++++.+|++.+++.+ +++++++++++||||||.+++.++++++
T Consensus 98 ~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l 177 (364)
T PRK04781 98 VPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERA 177 (364)
T ss_pred CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHH
Confidence 999 8999999999999888899999999999853 346678999886554 6789999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|+ + +++||+||+|.+|.+.. +...+....+++|+++||||.||+||+|+||+++++++++.+.+.+.. +
T Consensus 178 ~~~~~-~-~~~iI~Deay~~f~~~~----~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~--~ 249 (364)
T PRK04781 178 LQALQ-G-KALVVVDEAYGEFSDVP----SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAP--Y 249 (364)
T ss_pred HHhCC-C-CcEEEEeCcchhhcCCc----chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCC--C
Confidence 99985 5 78999999999987532 122222235789999999999999999999999999999999987754 4
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++..+|.++. ..+..+..+.++++++.+.+.|++++|+....|.+|+|+|++++ +.
T Consensus 250 ~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--------------~~ 313 (364)
T PRK04781 250 PVPTPCAALAEQALSAPA--LAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--------------DA 313 (364)
T ss_pred CCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------CH
Confidence 578999999999998753 24455555678999999999999887775445777899999986 45
Q ss_pred HHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~-~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.++.+.|.+ +||.|.||..|. .++++||+++. .++.+..++.|+++
T Consensus 314 ~~~~~~l~~-~gI~v~~~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~ 360 (364)
T PRK04781 314 EAAFQALLA-AGVVVRDQRAAPRLSDALRITLGT-PEQNDRVLAALQRT 360 (364)
T ss_pred HHHHHHHHH-CCeEEeeCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHHH
Confidence 677777764 599999998763 46799999996 34556666666543
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=349.45 Aligned_cols=326 Identities=26% Similarity=0.444 Sum_probs=276.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++|+|+.|++++.+|+.+.+++.++.. ....|+++.+ +++|+++++++. +++++|++|+|+++++..++.+
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~~~G~~~~l~~~~~~ 90 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEAD-KLHRYPDPDP-AELKQALADYYG------VDPEQILLGNGSDEIIELLIRA 90 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHH-HhhcCCCCCH-HHHHHHHHHHhC------cChHHEEEcCCHHHHHHHHHHH
Confidence 4689999999999999999999998864 3567866665 899999999974 5778999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
++++||+|++++|+|+.+...++..|++++.++++.+ +.+|++.+++.+++++++|++++|+||||.+++.+++++++
T Consensus 91 l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~ 168 (346)
T TIGR01141 91 FLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVL 168 (346)
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999999999999999988889999999999998643 55899999999888999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
+.|+ + ++++|+||+|.++.+.+. ..+.. .. .+++++++||||.+|++|+|+||+++++++++.+...... ++
T Consensus 169 ~~~~-~-~~~ii~D~~y~~~~~~~~-~~~~~--~~-~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~ 240 (346)
T TIGR01141 169 ERTP-E-DALVVVDEAYGEFSGEPS-TLPLL--AE-YPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP--FN 240 (346)
T ss_pred HhCC-C-CcEEEEECchhhhcCCcc-HHHHH--hh-CCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC--CC
Confidence 9987 7 899999999998664321 11111 11 3578999999999988999999999999999988876543 45
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
.+.+.|.++..+++. ..+.++.++.++++++.+.+.|++++|+++. +.+|+|+|++++. ++.
T Consensus 241 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-------------~~~ 302 (346)
T TIGR01141 241 LSRLAQAAAIAALRD----DDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-------------DAD 302 (346)
T ss_pred CCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-------------CHH
Confidence 789999999998875 4478889999999999999999988888865 4567889999873 467
Q ss_pred HHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~~~~~i~~~l~~l 457 (470)
++++.|.++ ||.+.||..|+. ++++|+|++ ++++++++++.|
T Consensus 303 ~~~~~L~~~-gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l 345 (346)
T TIGR01141 303 ALFEALLEK-GIIVRDLNSYPGLPNCLRITVG-TREENDRFLAAL 345 (346)
T ss_pred HHHHHHHHC-CeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence 888888765 999999998843 789999988 677888888765
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=352.02 Aligned_cols=320 Identities=23% Similarity=0.371 Sum_probs=262.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
..++|+.|++++++++.+. ......| |.....+|++++++++ | +++++|++|+|+++++.++++++
T Consensus 29 ~~~~l~~Nenp~~~~~~~~-------~~~~~~Y-p~~~~~~l~~~~a~~~----g--~~~~~I~~~~Gs~e~i~~~~~~~ 94 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLT-------QQTLNRY-PECQPKAVIENYAAYA----G--VKPEQVLVSRGADEGIELLIRAF 94 (351)
T ss_pred CceEecCCCCCCCCChhhc-------ccccccC-CCCChHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHHHHHh
Confidence 3599999999988876431 1235668 4445578888888875 4 58899999999999999999999
Q ss_pred cCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 ~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+++| |.|++++|+|+.|...++..|++++.+|++. ++.+|++.+++++ +++++|++++||||||..++.+++++|+
T Consensus 95 ~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~ 171 (351)
T PRK01688 95 CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLL 171 (351)
T ss_pred cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9997 9999999999999999999999999999863 4779999999988 5899999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
+.|++ +.+||+||+|.+|... .++..+....+++|+++||||.||++|+|+||+++++++++.+.+.... ++
T Consensus 172 ~~~~~--~~~vivDEay~~f~~~----~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~--~~ 243 (351)
T PRK01688 172 ELTRG--KAIVVADEAYIEFCPQ----ASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAP--YP 243 (351)
T ss_pred HhCCC--CcEEEEECchhhcCCC----CChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCC--CC
Confidence 99875 4689999999997532 1222332235799999999999999999999999999999999887654 45
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
.+.+.|.++.++|.+. ..+++++.++.++++++++.+.|++++++....|.+++|+|++++ +..
T Consensus 244 v~~~~~~~a~~~L~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--------------~~~ 307 (351)
T PRK01688 244 LSTPVADIAAQALSPQ--GIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT--------------ASS 307 (351)
T ss_pred CCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------CHH
Confidence 7788888888888752 146788888889999999999999887775445667778999885 467
Q ss_pred HHHHHHHHcCCEEEECCCCC-CCCCcEEEEeecCHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f-~~~~~iRls~~~~~~~i~~~l~~l 457 (470)
++.+.|+++ ||.++++..| +.++++|++++ +.++++.+++.|
T Consensus 308 ~l~~~L~~~-gi~vr~~~~~~~~~~~iRis~~-~~~e~~~l~~al 350 (351)
T PRK01688 308 AVFKSLWDQ-GIILRDQNKQPGLSNCLRITIG-TREECQRVIDAL 350 (351)
T ss_pred HHHHHHHHC-CeEEEECCCcCCCCCeEEEeCC-CHHHHHHHHHhh
Confidence 888888765 9999987654 56789999999 457788877765
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=327.93 Aligned_cols=333 Identities=23% Similarity=0.378 Sum_probs=288.6
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHcCC--CCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCC
Q 012124 124 FTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADA 200 (470)
Q Consensus 124 ~~~y~~~~g~~~lr~~ia~~l~~~~g~--~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~ 200 (470)
...|.+..|.+++|+++|+++.+.+|- ..+|+++++++|++.+.+.+...|.+|||..+|+.|.|+++..-++ ..|+
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgv 193 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 193 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCc
Confidence 355888899999999999999987764 5789999999999999999999999999999999999999976555 4799
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~ 274 (470)
++++|.....++|.++++.||+++++ ++|.++++||+||.|.+++++++..++++|.++ ++.+|+||+|+.-+
T Consensus 194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k-niHvI~DEIya~sV 272 (471)
T KOG0256|consen 194 EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK-NIHVISDEIYAGSV 272 (471)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc-ceEEEeehhhcccc
Confidence 99999999999999999999998843 788999999999999999999999999999999 99999999999999
Q ss_pred cCCCCcccccccCC----CCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcC
Q 012124 275 YAPATHTSFASLPG----MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 349 (470)
Q Consensus 275 ~~~~~~~~~~~~~~----~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~ 349 (470)
|+.....++.++.. ..+++-++.|+||-+|+||+|+|.++. ++++..+..++..... .|+..|+.++.+|.+.
T Consensus 273 F~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~--vSs~tQ~~la~LLSD~ 350 (471)
T KOG0256|consen 273 FDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGL--VSSQTQYLLASLLSDE 350 (471)
T ss_pred cCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccC--CcHHHHHHHHHHhchH
Confidence 98876666655421 358999999999999999999999996 5667777777765443 7899999999999985
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 350 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
.+.+.++++..++++.+..++.+.|+++ |+.+....+|+|+|+++.+.... .+.+...+++++++.+.++.+.|
T Consensus 351 ~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~lL~s-----~tfe~El~Lw~~i~~~vklnlSp 424 (471)
T KOG0256|consen 351 EFTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKLLTS-----LTFEGELELWERILDNVKLNLSP 424 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEEhHHhcCc-----CChHHHHHHHHHHHHhhccccCC
Confidence 5556778999999999999999999999 99999999999999999765321 11224567889999888999999
Q ss_pred CCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 430 GDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 430 g~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
|+.|.+ +||+|++|+. .++.++-+++||+.++....
T Consensus 425 G~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 425 GSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred CCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence 999864 7999999999 66777779999999987544
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=348.14 Aligned_cols=328 Identities=25% Similarity=0.423 Sum_probs=270.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++|+|+.|.|++.+++.+.+++.+.+. ....| +..|..++|+++++++. +++++|++|+|+++++..++..+
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~~~G~~~~l~~~~~~~ 94 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAA-GVNRY-PDMGAVELRAALAEHLG------VPPEHVAVGCGSVALCQQLVQAT 94 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHH-hcCcC-CCCcHHHHHHHHHHHhC------cCHHHEEECCCHHHHHHHHHHHh
Confidence 469999999999888899999988775 35668 56899999999999973 57889999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
++|||+|+++.|+|..+...++..|++++.++++++ +++|++.+++.++++++++++++||||||.++|.+++.++++
T Consensus 95 ~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~ 172 (352)
T PRK03321 95 AGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLD 172 (352)
T ss_pred cCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence 999999999999999988889999999999998643 458999999999889999999999999999999888888888
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 334 (470)
.+ ++ +++||+||+|.++.+++....++..++. .+++++++||||.||+||+|+||+++++++++.+.+.. ..++.
T Consensus 173 ~~-~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~ 247 (352)
T PRK03321 173 AV-PA-DVLVVLDEAYVEYVRDDDVPDGLELVRD-HPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA--VPFSV 247 (352)
T ss_pred hC-CC-CeEEEEechHHHhccCcCCCcHHHHHhh-CCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--CCCCC
Confidence 65 47 8999999999999886543333333443 57899999999999999999999999999999998764 45678
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+.+.|.++..+|.. .+.+.+.+++ +.++++.+.+.|++. |+.+.+ .+|+|+|++++. +..+
T Consensus 248 s~~~q~~a~~~l~~---~~~~~~~~~~-~~~~r~~~~~~L~~~-~~~~~~-~~g~~i~i~l~~-------------~~~~ 308 (352)
T PRK03321 248 NSLAQAAAIASLAA---EDELLERVDA-VVAERDRVRAALRAA-GWTVPP-SQANFVWLPLGE-------------RTAD 308 (352)
T ss_pred CHHHHHHHHHHhcC---HHHHHHHHHH-HHHHHHHHHHHHHHC-CCccCC-CCCCEEEEeCCC-------------CHHH
Confidence 99999998888874 2455554444 445667788999887 776544 467889999853 5678
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 415 LCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+++.|.+ +||.+.+ |+ ++++||+++ +.++++.++++|++++.
T Consensus 309 ~~~~l~~-~gI~v~~---~~-~~~iRi~~~-~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 309 FAAAAAE-AGVVVRP---FA-GEGVRVTIG-APEENDAFLRAARAWRA 350 (352)
T ss_pred HHHHHHH-CCEEEEc---cC-CCcEEEeeC-CHHHHHHHHHHHHHHhc
Confidence 8888754 5999987 43 457999986 55678888888887654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=342.33 Aligned_cols=316 Identities=22% Similarity=0.343 Sum_probs=254.2
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.++++|+|+.|+|++++|+.+++++.+.+..+. ..| ++.|.++||+++++|+++. + +++++|++|+|++++|.++
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y-~~~~~~~Lr~aia~~~~~~-~--~~~~~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIY-YDSPDEELIEKILSYLDTD-F--LSKNNVSVGNGADEIIYVM 92 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcC-CCCChHHHHHHHHHHhCCC-C--CCcceEEEcCCHHHHHHHH
Confidence 345789999999999999999999988775443 447 4458999999999999753 3 6889999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+.++ |.|++++|+|+.|...++..|++++.+|++.+ +.++.+. + .+++++++++||||||.++|.++++
T Consensus 93 ~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~ 161 (335)
T PRK14808 93 MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIE 161 (335)
T ss_pred HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHH
Confidence 9887 68999999999999999999999999998643 3343322 2 2568899999999999999988888
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+ ++ +++||+||+|.+|. +....++ +. ..+++|+++||||.++++|+|+||+++++++++.+.+.+.
T Consensus 162 ~l~----~~-~~~ii~DE~Y~~f~--~~~~~~~--~~-~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~-- 229 (335)
T PRK14808 162 RIL----KT-GAFVALDEAYYEFH--GESYVDL--LK-KYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRL-- 229 (335)
T ss_pred HHH----hc-CCEEEEECchhhhc--CCchHHH--HH-hCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcC--
Confidence 776 47 89999999999964 2211121 12 2468999999999999999999999999999999987663
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++.+.+.|.++..++++ .++..+.++.++++++.+.+.|+++ |+.+.+++++ |+|++++..
T Consensus 230 ~~~~~~~~q~a~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~l~~~------------ 291 (335)
T PRK14808 230 PFNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFIFMEKE------------ 291 (335)
T ss_pred CCCCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCe-EEEEeCCCc------------
Confidence 356789999999888874 4566777778888899999999988 7888777555 579998753
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+..++.+.|.++ ||.|.. | .+++|++++.. ++.+.+++.|++
T Consensus 292 ~~~~~~~~l~~~-Gi~V~~---~--~~~~Risi~~~-~~~~~~~~~l~~ 333 (335)
T PRK14808 292 EKERLLEHLRAK-NIAVRS---F--REGVRITIGKR-EENDMILKELEV 333 (335)
T ss_pred cHHHHHHHHHHC-CeEEEE---C--CCCeEEecCCH-HHHHHHHHHHHh
Confidence 567788877654 999985 3 47899998864 567777777654
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=346.64 Aligned_cols=327 Identities=28% Similarity=0.447 Sum_probs=270.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~ 170 (470)
.++++|+|+.|++++.+++.+.+++.+.+.. ...|+++. ..+||+++++++ | +++++|++ |+|+++++..+
T Consensus 32 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~-~~~lr~~ia~~~----~--~~~~~i~~~~~Ga~~~i~~~ 103 (361)
T PRK00950 32 DPESIIKLGSNENPLGPSPKAVEAIEKELSK-IHRYPEPD-APELREALSKYT----G--VPVENIIVGGDGMDEVIDTL 103 (361)
T ss_pred CccceEEccCCCCCCCCCHHHHHHHHHHHHh-hcCCCCCC-HHHHHHHHHHHh----C--CCHHHEEEeCCCHHHHHHHH
Confidence 4457899999999988888888888877654 56685544 489999999987 3 57889999 79999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
++.++++||.|++++|+|+.+...++..|++++.++.+ +++.+|++.+++.++++++++++++||||||.+++.++
T Consensus 104 ~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~-- 179 (361)
T PRK00950 104 MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEED-- 179 (361)
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHH--
Confidence 99999999999999999999998999999999999854 45679999999999888999999999999999999665
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+.++|+++ +++||+||+|.++. +....+ +....+++++++||||.+|++|+|+||+++++++++.+.+....+
T Consensus 180 -l~~l~~~~-~~~li~De~y~~~~--~~~~~~---~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~ 252 (361)
T PRK00950 180 -IRKILEST-DALVFVDEAYVEFA--EYDYTP---LALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPF 252 (361)
T ss_pred -HHHHHHHC-CcEEEEECchhhhC--ccchHH---HHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCCC
Confidence 45556688 99999999999865 221222 222247899999999999999999999999999999888776543
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
+.+.+.|.++..++.+ .+++++.++.++++++.+.+.|+ +.+. +.+++|+|++++..
T Consensus 253 --~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~l~----~~~~-~~~~~~i~~~~~~~------------ 309 (361)
T PRK00950 253 --SLTRLSQAAAIAALSD----KEYIEKSIEHGIKSREYLYNELP----FKVY-PSEANFVLVDVTPM------------ 309 (361)
T ss_pred --CCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHhhcC----eeEC-CCcceEEEEECCCC------------
Confidence 4778899999988874 67788888999999999888875 4443 56678899998532
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|.++ ||.+.||..|+. ++++|++++ +.++++++++.|+++++
T Consensus 310 ~~~~~~~~l~~~-gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 310 TAKEFCEELLKR-GVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEILKEIVE 361 (361)
T ss_pred CHHHHHHHHHHC-CEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHHHHHhC
Confidence 788999998765 999999988853 469999998 55689999999988753
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=345.76 Aligned_cols=320 Identities=22% Similarity=0.353 Sum_probs=259.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.+.++|+.|++++++++.+ .. .....|++ .+..+||+++++++ | +++++|++|+|++++|.+++++
T Consensus 31 ~~~~~l~~ne~~~~~~~~~------~~-~~~~~Yp~-~~~~~Lr~aia~~~----~--~~~~~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 31 RGDIWINANESPFNNEYKL------DL-ARLNRYPE-CQPPELINAYSAYA----G--VAPEQILTSRGADEAIELLIRA 96 (354)
T ss_pred CCcEEeeCCCCCCCCChhh------hh-HHhccCCC-CCHHHHHHHHHHHh----C--cCHHHEEEeCCHHHHHHHHHHH
Confidence 3569999999998887543 11 13567854 46899999999986 4 6889999999999999999999
Q ss_pred hcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 VCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
++++| |+|++++|+|+.|...++..|++++.+|++. ++.+|++.+++ + +++++|++++||||||.+++.+++++|
T Consensus 97 ~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l 172 (354)
T PRK04635 97 FCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQL 172 (354)
T ss_pred hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHH
Confidence 99999 9999999999999999999999999999863 46689998874 4 589999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|+ +++||+||+|.+|... .++.++....+++++++||||.+|++|+|+||+++++++++.+..... .+
T Consensus 173 ~~~~~---~~~vivDeay~~~~~~----~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~--~~ 243 (354)
T PRK04635 173 IEMTP---DAIVVVDEAYIEFCPE----YSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIA--PY 243 (354)
T ss_pred HHhCC---CcEEEEeCchHhhccC----cchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcC--CC
Confidence 88764 5899999999987532 122233223578999999999999999999999999999998876544 35
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++.++|.+. ..+++++.++.++++++.+.+.|++++++.+.++. |.|+|++++ +.
T Consensus 244 ~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-g~f~~~~~~--------------~~ 306 (354)
T PRK04635 244 PVPLPVSEIATQALSEA--GLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN-GNYVLAKFD--------------DV 306 (354)
T ss_pred CCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC-CcEEEEECC--------------CH
Confidence 57888898888888753 23567778888999999999999998668877665 567898886 35
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
.++.+.|. ++||.+.++..++.++++|+|++ +.++++.+++.|++
T Consensus 307 ~~~~~~l~-~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~ 351 (354)
T PRK04635 307 DAVFKALW-DAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHH-HCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHH
Confidence 57777665 55999987655555789999987 56788888888764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=337.87 Aligned_cols=305 Identities=17% Similarity=0.203 Sum_probs=243.7
Q ss_pred CeEEccCCCCCCCCh-HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTP-VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~-~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++|+|+.|.++++++ +.+.+ ..+ ..|+. +..+||++|++++ .+++|++|+|++++|.+++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~~----~~yp~--~~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~~~~-- 81 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DAW----ARLPE--TDDGLEAAARAYY--------GAPQLLPVAGSQAAIQALP-- 81 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HHH----HhCCC--ChHHHHHHHHHHh--------CCCCEEECcCHHHHHHHHH--
Confidence 469999997665543 33222 222 23743 3489999999996 2479999999999999875
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
++.+||+|++++|+|+.+...++..|++++.+|++ .+++.++ +++++++++||||||.++|.+++++|+
T Consensus 82 ~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~ 150 (330)
T PRK05664 82 RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWH 150 (330)
T ss_pred HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHH
Confidence 35799999999999999999999999999999863 2344443 678889999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++|+++ +++||+||+|.++. ..+++..++. .+++|+++||||.+|+||+|+||+++++++++.+.+.... ++
T Consensus 151 ~~~~~~-~~~iI~DE~y~~~~----~~~s~~~~~~-~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~--~~ 222 (330)
T PRK05664 151 ARLAAR-GGWLVVDEAFMDNT----PQHSLAACAH-RPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGP--WT 222 (330)
T ss_pred HHHHhc-CCEEEEECCcccCC----Cccccccccc-CCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCC--CC
Confidence 999999 99999999998753 1245556654 5789999999999999999999999999999999887553 35
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce--EEEeeeccCccCCcccCCCCCCC
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA--FYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
.+.+.|.++..+|++ ..+.++.++.++++++.+.+.|+++ |+. +.+| +|+|++++ +
T Consensus 223 ~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~~~~~f~~~~~~--------------~ 280 (330)
T PRK05664 223 VSGPTRWLAQAALAD----TPWQRRQRERLLAASQRLAALLRRH-GLT---PAGGCALFQWVRTE--------------D 280 (330)
T ss_pred CCHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHC-CCc---ccCCcceEEEEecC--------------C
Confidence 788999999999985 4567788999999999999999987 654 3344 77888764 5
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
..++.+.|.++ ||.|.+ |+.++++||+++.+.++++++++.|+++.++
T Consensus 281 ~~~~~~~l~~~-gi~v~~---f~~~~~iRis~~~~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 281 AAALHEFLARR-GILTRL---FEQPASLRFGLPADEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHC-CeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 67888877654 999974 5567899999997666777777777666543
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=338.35 Aligned_cols=312 Identities=18% Similarity=0.195 Sum_probs=251.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++++|+.|++++++|+..... .. ...|++ .. .+||+++++++ |+. ++++|++|+|++++|.++.. +
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~----~~~Yp~-~~-~~L~~~ia~~~----~~~-~~~~I~i~~Gs~e~i~~l~~-~ 90 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DA----WRRLPE-DD-DGLAACAARYY----GAP-DAAHVLPVAGSQAAIRALPA-L 90 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HH----HHhCCC-ch-HHHHHHHHHHh----CCC-CcccEEECcCHHHHHHHHHH-h
Confidence 469999999887765221111 11 234844 34 89999999986 542 46899999999999997755 5
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
+++|| |++++|+|+.|...++..|++++.++.+. +.+. +.++++++++||||||.++|.+++++|++
T Consensus 91 ~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~~----~~~~~v~l~nPnNPTG~~~s~~~l~~l~~ 157 (339)
T PRK06959 91 LPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTLP----AALTHLIVVNPNNPTAERLPAARLLRWHA 157 (339)
T ss_pred cCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhcc----ccCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 67887 88999999999999999999999988642 2222 24578999999999999999999999999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 334 (470)
.|+++ +.+||+||+|.++.+. +++..+.. .+++|+++||||.||++|+|+||+++++++++.+.+.... ++.
T Consensus 158 ~~~~~-~~~vI~DEay~~~~~~----~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~--~~v 229 (339)
T PRK06959 158 QLAAR-GGTLIVDEAFADTLPA----ASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGA--WTV 229 (339)
T ss_pred HHHHc-CCEEEEECCCccCCCc----ccchhccC-CCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCC--CCC
Confidence 99998 8999999999997542 34444433 4779999999999999999999999999999999988754 447
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+.+.|.++.++|++ .++.++.++.++++++.+.+.|+++ |+.+. .+++|+|++++ +..+
T Consensus 230 s~~~q~a~~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--------------~~~~ 288 (339)
T PRK06959 230 SGPARHAVRAAFAD----AAWQAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP--------------RAAA 288 (339)
T ss_pred cHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC--------------CHHH
Confidence 88999999999985 6778889999999999999999988 77664 35788999875 4567
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 415 LCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.+.|.++ ||.|.. |+..+++||+++.+.++++.+++.|+++++.+..
T Consensus 289 l~~~l~~~-GI~vr~---~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 289 LHAALARR-GIWTRY---FAPPPSVRFGLPADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred HHHHHHhC-CeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence 88888766 999974 4556799999977777888888888888776543
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=334.39 Aligned_cols=317 Identities=21% Similarity=0.356 Sum_probs=252.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+.|+|+.|.+++++|+.+.+++.+++.. ....| +..|.++||+++++++. +++++|++|+|+++++..++.
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVK 90 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHH
Confidence 36799999999988888999999888754 46778 56799999999999973 688999999999999998887
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
.+ +||+|++++|+|+.+...++..|++++.++++. ++++|++.+++.+ ++++++++++||||||.+++.+++.++
T Consensus 91 ~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~i 165 (337)
T PRK03967 91 LF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILKV 165 (337)
T ss_pred Hh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 76 799999999999999888999999999999863 4679999998865 578889999999999999996665554
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+ ++ +++||+||+|.+|.. ....++ .. ..+++|+++||||.||+||+|+||+++++++++.+.+.... +
T Consensus 166 ---~-~~-~~~ii~De~y~~~~~--~~~~~~--~~-~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~--~ 233 (337)
T PRK03967 166 ---L-ET-GKPVVLDEAYAEFSG--KSLIGL--ID-EYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPP--F 233 (337)
T ss_pred ---H-hc-CCEEEEECchhhhcc--cchHHH--Hh-hCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCC--C
Confidence 4 47 899999999998752 111221 12 24689999999999999999999999999999999887654 4
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++..+|++ .++..+.++.+.++++.+.+.|.+. ..|.+++|+|++++
T Consensus 234 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~---------------- 288 (337)
T PRK03967 234 SLNILTMKIVRLALDH----YDLIEERIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD---------------- 288 (337)
T ss_pred CCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH----------------
Confidence 6789999999999975 4455555566667778888888764 23678899998752
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+.+.|+++ ||.+.++.. ..++++||+++. .++.+++++.|+++.+.+
T Consensus 289 --~~~~l~~~-gi~v~~~~~-~~~~~~Ri~~~~-~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 289 --AYDYLLEN-GIVVRKLSG-RLEGHIRVTVGK-REENDEFIKALKEIKEGY 335 (337)
T ss_pred --HHHHHHHC-CEEEEeCCC-CCCCeEEEecCC-HHHHHHHHHHHHHHHHhc
Confidence 45666655 999988653 346799999986 344556666666665544
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=335.16 Aligned_cols=319 Identities=22% Similarity=0.329 Sum_probs=259.8
Q ss_pred HHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 86 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 86 ~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
.++...++++.++|+.|.|+..+| ..+. .......|+++.+ ++||+++++++ | +++++|++|+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~G~~~ 75 (330)
T TIGR01140 9 AARYGIPPEDWLDFSTGINPLGPP--VPPI----PASAWARYPDPEY-DELRAAAAAYY----G--LPAASVLPVNGAQE 75 (330)
T ss_pred HHHcCCChhheeEccccCCCCCCC--hhhc----chHHHhhCCCccH-HHHHHHHHHHh----C--CChhhEEECCCHHH
Confidence 344444556789999999887765 1111 1123567866665 99999999986 3 46899999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++..+... +.+| .|++++|+|..+...++..|.+++.++ |++.+++.+ ++++++++++||||||.+++
T Consensus 76 ~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~ 143 (330)
T TIGR01140 76 AIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAAL-EELDVLVLCNPNNPTGRLIP 143 (330)
T ss_pred HHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhc-ccCCEEEEeCCCCCCCCCCC
Confidence 99997666 5678 699999999999999999999998887 778888888 46788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~ 325 (470)
.+++++|+++|+++ |++||+||+|.++.+. .++..+....+++|+++||||.+|++|+|+||+++++++++.+..
T Consensus 144 ~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~----~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~ 218 (330)
T TIGR01140 144 PETLLALAARLRAR-GGWLVVDEAFIDFTPD----ASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLRE 218 (330)
T ss_pred HHHHHHHHHHhHhc-CCEEEEECcccccCCc----cchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHHHHh
Confidence 99999999999999 9999999999987653 133333222578999999999999999999999999999999887
Q ss_pred HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
... .++.+.++|.++..++++ ..+.++.++.++.+++.+.+.|++++.+.+. +.+|+|+|++++
T Consensus 219 ~~~--~~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~--------- 282 (330)
T TIGR01140 219 ALG--PWTVNGPARAAGRAALAD----TAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP--------- 282 (330)
T ss_pred cCC--CCCchHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC---------
Confidence 664 345788999999999985 5677888999999999999999998556664 457899999876
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHH
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l 457 (470)
+..+++++|+++ ||.+.||..|. ..+++|++++...++ +.++.+|
T Consensus 283 -----~~~~l~~~l~~~-gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 283 -----DAAALHEALARR-GILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred -----CHHHHHHHHHHC-CEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 456888988875 99999999995 347999999985544 6666654
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=326.16 Aligned_cols=298 Identities=21% Similarity=0.336 Sum_probs=232.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++|+|+.|.++++ |+.+.+++.+++.. ...|+. ...||+++++++ | ++|++|+|+++++.+++..+
T Consensus 9 ~~i~l~~~~np~~-p~~~~~a~~~~~~~-~~~yp~---~~~l~~~ia~~~----~-----~~I~vt~G~~~al~~~~~~~ 74 (311)
T PRK08354 9 GLIDFSASVNPYP-PEWLDEMFERAKEI-SGRYTY---YEWLEEEFSKLF----G-----EPIVITAGITEALYLIGILA 74 (311)
T ss_pred ceeEecCCCCCCC-CHHHHHHHHHHHHH-hhcCCC---hHHHHHHHHHHH----C-----CCEEECCCHHHHHHHHHHhh
Confidence 5799999987765 57888888877553 456743 467999999885 2 48999999999999887544
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
.+||+|++++|+|+.+...++..|++++.++ +|++.+++.++ +++++++++||||||.+++.+++++|++
T Consensus 75 -~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~ 144 (311)
T PRK08354 75 -LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLD 144 (311)
T ss_pred -CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHH
Confidence 5999999999999999999999999997654 58889988876 5678899999999999999999999999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 334 (470)
+|+++ |++||+||+|.+|.+++. . .. .+++|+++||||.|++||+|+||+++ +.+.+.+....+ ..
T Consensus 145 ~a~~~-~~~li~De~y~~f~~~~~---~---~~--~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~~--~~ 210 (311)
T PRK08354 145 AVEDR-NALLILDEAFIDFVKKPE---S---PE--GENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPW--SI 210 (311)
T ss_pred Hhhhc-CcEEEEeCcchhcccccc---c---cC--CCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCCc--cC
Confidence 99999 999999999999887642 1 11 57899999999999999999999998 556666655433 35
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+.+.|.++..+++. ..+++++.++.++++++.+.+.+. .++.++|++ ++++ +..+
T Consensus 211 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~~~-~~~~--------------~~~~ 265 (311)
T PRK08354 211 GSTGYAFLEFLIED---DFEHLRKTMPLIWREKERFEKALY-------VKSDANFFI-KDVG--------------DAEK 265 (311)
T ss_pred CHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCcEEE-EECC--------------CHHH
Confidence 56667777777663 135566666666666666555441 246677755 5653 4677
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeecC--HHHHHHHHHH
Q 012124 415 LCRYLLDKAQVALVPGDAFGDDTCIRISYAAS--LTTLQAAVER 456 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~--~~~i~~~l~~ 456 (470)
+++.|.++ ||.+.||..|+.++++||+++.. .+.+.++++.
T Consensus 266 ~~~~l~~~-gv~v~~g~~f~~~~~iRi~~~~~~~~~~l~~al~~ 308 (311)
T PRK08354 266 FVEFLKRN-GILVRDCTSFGLPGYIRFSVRDREENEKLIRALRE 308 (311)
T ss_pred HHHHHHHC-CeEEEecccCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 88887654 99999999998789999999973 2444444443
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=302.67 Aligned_cols=345 Identities=37% Similarity=0.640 Sum_probs=286.7
Q ss_pred EEccCCCCCCCChHHHHHHHHH-HHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 97 IRLAAGEPDFDTPVLIAEAGIN-AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~-~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
++|+.|.+++.+++.+.....+ ........|.+..|..++++.+++++...++....++++++++|+++++..++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 80 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL 80 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC
Confidence 4789999988887776666654 222345778899999999999999999888876778899999999999999999999
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 176 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
++||+|++++|+|+++...++..|.+++.++.+.++....+.+.++....++++++++++++||||..+|.+++++|+++
T Consensus 81 ~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~ 160 (350)
T cd00609 81 NPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAEL 160 (350)
T ss_pred CCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999765543322366777777889999998899999999999999999999
Q ss_pred HHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HHHHHHHHHhhhccCCC
Q 012124 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGA 334 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~~~~~ 334 (470)
|+++ |+++|+|++|+.+.+.+.....+.... ..+.+++++|++|.++.+|.|+||+++++ ++.+.+.........++
T Consensus 161 ~~~~-~~~~ivD~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T cd00609 161 AKKH-GILIISDEAYAELVYDGEPPPALALLD-AYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238 (350)
T ss_pred HHhC-CeEEEEecchhhceeCCcccccccCcC-ccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCC
Confidence 9999 999999999998777544322122222 25678999999999988999999999999 89999988877767789
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+...|.++..+++.. .++.+++++.++++++.+.+.|++.+...+..+.+|+++|+.++.. ...+
T Consensus 239 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~ 303 (350)
T cd00609 239 STLSQAAAAAALDDG---EEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG------------DDEE 303 (350)
T ss_pred ChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC------------ChHH
Confidence 999999999999862 3788889999999999999999987444435677899999998753 2444
Q ss_pred HHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHH
Q 012124 415 LCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~ 458 (470)
.+.++++++||.+.++..|. .+.++|++++...++++.++++|+
T Consensus 304 ~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 304 FLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred HHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 55556667799999988876 678999999988889999998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=313.37 Aligned_cols=368 Identities=16% Similarity=0.195 Sum_probs=285.1
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC--CCCChH---HHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DFDTPV---LIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~--~~~~~~---~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l 144 (470)
+++.+++.......++...+.+.|.++|+|+.|+| |+.+|. .+.+++.+++..+...|++..|.++||+++++++
T Consensus 12 r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~ 91 (460)
T PRK13238 12 RIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIF 91 (460)
T ss_pred eeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHh
Confidence 35566777777788888888899999999999999 677755 6888888888877889999999999999999997
Q ss_pred HHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC------CCCc--cC
Q 012124 145 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS------ENFL--LD 216 (470)
Q Consensus 145 ~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~------~~~~--~d 216 (470)
. .+++++|+|+++++.+++.++++||| |++++|.|..+...++..|++++.++++.. ++|. +|
T Consensus 92 ~--------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id 162 (460)
T PRK13238 92 G--------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFD 162 (460)
T ss_pred C--------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCcC
Confidence 3 35799999999999999999999999 999999999999999999999999998642 3444 99
Q ss_pred HHhHhhhccC----CceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEecccc--ccccCC-----CCccccc
Q 012124 217 PKVLESKLTE----KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYE--HIIYAP-----ATHTSFA 284 (470)
Q Consensus 217 ~~~l~~~l~~----~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~--~~~~~~-----~~~~~~~ 284 (470)
++.|++.+++ ++++|++++|+|||| .++|.+++++|.++|++| |++||+|+++. ...|.. ....++.
T Consensus 163 ~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~-gi~li~Daa~~~e~a~f~~~~e~g~~~~si~ 241 (460)
T PRK13238 163 LEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY-GIPVVIDAARFAENAYFIKQREPGYKDKSIK 241 (460)
T ss_pred HHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECcchhhhhhhhhhccccccCCCHH
Confidence 9999999973 799999999999998 999999999999999999 99999999663 233321 1122222
Q ss_pred ccCCCCCceEEEeccCccccccccee------eEEEcC-HHHHHHHHHHh----hhccCCC-ChHHHHHHHHHHhcCCCC
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL------GYIAGP-KHFVAACNKIQ----SQFTSGA-SSISQKAGVAALGLGYAG 352 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~------G~~~~~-~~~~~~l~~~~----~~~~~~~-~~~~q~a~~~~l~~~~~~ 352 (470)
.+ ++.++|++|.+.++|+|+ ||++++ +++++.++... ...+++. +...|.|++..|.....
T Consensus 242 ~i------~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~- 314 (460)
T PRK13238 242 EI------AREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD- 314 (460)
T ss_pred HH------hhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhC-
Confidence 21 233466666666666665 366666 57888887663 2324444 44457887777754221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 353 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
++++..+ .+++++|.+.|.+. |+.+..|.+|+|+++++.+.... ..+ ....+.+++.+|+++.||.+.|+..
T Consensus 315 ~~~~~~~----~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~-~~~--~~~~~~~~a~~L~~e~GV~~~~~~~ 386 (460)
T PRK13238 315 EDYLAYR----IGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPH-IPA--EQFPAQALACELYLEAGIRGVEIGS 386 (460)
T ss_pred hHHHHHH----HHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCC-CCC--CCCchHHHHHHHHHHcCeeeecccc
Confidence 3344443 33578999999887 99999999999999998643100 000 0013578999999999999999988
Q ss_pred CCC-------------CCcEEEEeec---CHHHHHHHHHHHHHHHH
Q 012124 433 FGD-------------DTCIRISYAA---SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 433 f~~-------------~~~iRls~~~---~~~~i~~~l~~l~~~l~ 462 (470)
|.. ...+||++.. +.+.++.+.++|+++.+
T Consensus 387 f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 387 LLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred eecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 752 2579999998 99999999999998764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=271.11 Aligned_cols=349 Identities=19% Similarity=0.325 Sum_probs=276.5
Q ss_pred CeEEccCCCCCCCC--hHHHHHHHHHHHHcC-----CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDT--PVLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~--~~~~~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.|.|+.|+|..-+ .+.+.+...+.+..+ ..+|..++|...|.++++..+++++|+..+++||.+|+|+|.++
T Consensus 31 g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~f 110 (417)
T COG3977 31 GAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAF 110 (417)
T ss_pred CceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchH
Confidence 47999999998655 344555666655543 57899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC---CC--CeEEEc-CCCCCChHHHHHHcCCEEE---EecCcCCCC--CccCHHhHhhhccCCceEEEEcCC
Q 012124 168 LQAVLAVCS---PG--DEVIIP-APFWVSYPEMARIADATPV---ILPTRISEN--FLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 168 ~~~~~~l~~---~g--d~Vlv~-~p~y~~~~~~~~~~g~~~~---~v~~~~~~~--~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+.++..|.. .| ..|+++ .|.|.+|-++--.-.+-+. .+...+.+. +.+|+++|. +.+.+.+|+++-|
T Consensus 111 FYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~ic~SRP 188 (417)
T COG3977 111 FYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGAICVSRP 188 (417)
T ss_pred HHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHHHcc--cccccceEEecCC
Confidence 999988853 34 345554 8999988754221111110 111222333 345666664 3578899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc--cccc-CCCCCceEEEeccCcccccccceeeEE
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--FASL-PGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~--~~~~-~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
.||||.+++.+++.+|.++|++| |+.+|+|.+|+. +.+. +.+. .-..+++|.+.|+||. |+||.|+|.+
T Consensus 189 tNPTGNVlTdeE~~kldalA~~~-giPliIDnAYg~------PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG~R~GIi 260 (417)
T COG3977 189 TNPTGNVLTDEELAKLDALARQH-GIPLIIDNAYGV------PFPGIIFSDATPLWNENIILCMSLSKL-GLPGSRCGII 260 (417)
T ss_pred CCCCCCcccHHHHHHHHHHhhhc-CCcEEEecccCC------CCCceecccccccCCCCEEEEeehhhc-CCCCcceeEE
Confidence 99999999999999999999999 999999999974 1111 1111 1125899999999996 7999999999
Q ss_pred EcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCC--CeecCCCceEE
Q 012124 314 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEG--VKMSEPQGAFY 390 (470)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g--~~~~~~~~g~~ 390 (470)
++.++++..+.......+..+..+++++++.+++.|.+..-.-+-++..|+++.+...+.|++ +|. +.++.|++.+|
T Consensus 261 Iane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIF 340 (417)
T COG3977 261 IANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIF 340 (417)
T ss_pred EccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCccee
Confidence 999999999999998889999999999999999998763333345678899999998888877 443 66789999999
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---------~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+|+.+.+.. .+..++.++|.++ ||.+.||..|.. ..++|+++..++++|++++++|++.+
T Consensus 341 lWLWf~dLP----------Itt~~LYq~LKa~-Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~v 409 (417)
T COG3977 341 LWLWFKDLP----------ITTEELYQRLKAR-GVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEV 409 (417)
T ss_pred ehhhhccCC----------CCHHHHHHHHHhC-eEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHH
Confidence 998876642 2789999998766 999999999864 24899999999999999999999988
Q ss_pred Hhh
Q 012124 462 LTL 464 (470)
Q Consensus 462 ~~~ 464 (470)
+++
T Consensus 410 e~~ 412 (417)
T COG3977 410 ERA 412 (417)
T ss_pred HHH
Confidence 765
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=267.18 Aligned_cols=348 Identities=23% Similarity=0.369 Sum_probs=277.9
Q ss_pred hHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCeEEEc
Q 012124 109 PVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIP 184 (470)
Q Consensus 109 ~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~ 184 (470)
|.++++...+.+.. ....|+.++|.+-+|+.+|+|+.++-|++++|++|++|+|++.++..++..++ .+.|.|+++
T Consensus 88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliP 167 (475)
T KOG0258|consen 88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIP 167 (475)
T ss_pred CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEee
Confidence 55566666666654 46789999999999999999999999999999999999999999999999875 567999999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012124 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 185 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
-|.||-|...+..+|+..+++-++++.+|.+|.++|++.+++ +++++++.||.||||+++|.+.+++|+.+|.++
T Consensus 168 iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~ 247 (475)
T KOG0258|consen 168 IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE 247 (475)
T ss_pred cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999988853 788999999999999999999999999999999
Q ss_pred CCEEEEEeccccccccCCC-Ccccccc----cCCC---CCceEEEeccCccc-ccccceeeEEE---cCHHHHHHHHHHh
Q 012124 260 PRLLVLSDEIYEHIIYAPA-THTSFAS----LPGM---WERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQ 327 (470)
Q Consensus 260 ~~~~iI~Dd~~~~~~~~~~-~~~~~~~----~~~~---~~~~i~i~S~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~ 327 (470)
+++++.||+|.+-.|... ...++.. +.+. .-..+.++|.||.+ +=.|.|-||+- .+++..+.+.+..
T Consensus 248 -~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~ 326 (475)
T KOG0258|consen 248 -GLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLA 326 (475)
T ss_pred -CeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHH
Confidence 999999999999888753 3334332 2211 22356788889998 55889999965 4667777776665
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec--cCc
Q 012124 328 SQFTSGASSISQKAGVAALGLGYAG-------GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF--STY 398 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~--~~~ 398 (470)
. ...|++..+|.......+-..-+ ....+.+.+.++.|...+.+.++.++|+.+.+++|.||+|.++ |..
T Consensus 327 s-i~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~k 405 (475)
T KOG0258|consen 327 S-IKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPK 405 (475)
T ss_pred h-hhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHH
Confidence 4 35577888888777666532211 2224567778899999999999999999999999999998654 432
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC-C--cEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-T--CIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~-~--~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
..+++...+...+...+.+|++..||++.||+.||.. | |+|.++-... + +.+++++++-.
T Consensus 406 -aie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~ 468 (475)
T KOG0258|consen 406 -AIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHA 468 (475)
T ss_pred -HHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHH
Confidence 1233333444567778899999999999999999964 3 7998887644 3 66666665543
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=286.93 Aligned_cols=335 Identities=19% Similarity=0.169 Sum_probs=252.5
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~y~---~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+++|+|+.|+ |++++++.+.+++.+.+......|. ...|..++++++++++.+.+|. +++|++|+| ++++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~ 115 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDAN 115 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHH
Confidence 678899999998 7888889999999998865333332 3478999999999999988884 378888888 6788
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG 241 (470)
..++.++++|||+|++++|+|+++...++..|++++.++. .|++.+++.+++ ++++|++.+.+||||
T Consensus 116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 116 GGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred HHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 8889999999999999999999999999999999888764 478888887753 566677666789999
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC--cccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~--~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
...+ +++|.++|++| +++||+||+|+...+.... ......+. .+.+++++||||.++ |+|+||+++++++
T Consensus 189 ~~~~---~~~l~~la~~~-~~~li~De~~~~g~~~~~~~~~~~~~~~~--~~~~i~~~S~sK~~~--g~r~G~v~~~~~~ 260 (397)
T PRK06939 189 DIAP---LPEICDLADKY-DALVMVDDSHAVGFVGENGRGTVEHFGVM--DRVDIITGTLGKALG--GASGGYTAGRKEV 260 (397)
T ss_pred CcCC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCCHHHHcCCC--CCCcEEEEECHHHhC--ccCceEEEeCHHH
Confidence 8666 89999999999 9999999999642222111 11222222 245799999999994 4599999999999
Q ss_pred HHHHHHHhhhcc--CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 320 VAACNKIQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
++.+........ ...++..+.++.++++. .....++++.++++++++.+.|+++ |+++..+.++++ ++.++.
T Consensus 261 ~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~-~~~~~~ 334 (397)
T PRK06939 261 IDWLRQRSRPYLFSNSLAPAIVAASIKVLEL----LEESDELRDRLWENARYFREGMTAA-GFTLGPGEHPII-PVMLGD 334 (397)
T ss_pred HHHHHHhCccccccCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEE-EEEECC
Confidence 998876543222 22234445555555543 1123567888999999999999887 676666666664 334543
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.. +..++++.|+++ ||.+.++. |.. .+++|++++. ++++|++++++|+++++++
T Consensus 335 ~~-----------~~~~~~~~L~~~-gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 335 AK-----------LAQEFADRLLEE-GVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred HH-----------HHHHHHHHHHHC-CceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 21 567899998877 99998644 421 3589999864 8999999999999998765
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=279.84 Aligned_cols=333 Identities=18% Similarity=0.192 Sum_probs=249.6
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcCCCCCCCCc---Cc----HHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFTRYTPNA---GT----LELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~y~~~~---g~----~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+++|+|+.|++ ++++++.+++++.+++.+...+|+++. |. .+|++++++++. .+++++++|+
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii~~~~ 107 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTILYASC 107 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEEECch
Confidence 5678999999994 888889999999999876434676666 76 677778887763 2578888999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 237 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~ 237 (470)
++++..++.+++++||.|++++|.|+++...++..+.+.+.++ . +|++.+++.+++ ++++|++.+++
T Consensus 108 ~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~----~---~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 180 (393)
T TIGR01822 108 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA----N---NDMADLEAQLKEARAAGARHRLIATDGVF 180 (393)
T ss_pred HHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC----C---CCHHHHHHHHHhhhhcCCCceEEEEeCCc
Confidence 9999999999999999999999999999998888888776554 1 689999988864 67788888889
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc-CCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
||||.+.+ +++|+++|++| |++||+||+|+...++... ...... +-..+.+++++||||.+ +|+|+||++++
T Consensus 181 ~~tG~~~~---l~~i~~la~~~-~~~li~De~~~~g~~~~~~-~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~~~ 253 (393)
T TIGR01822 181 SMDGVIAP---LDEICDLADKY-DALVMVDECHATGFLGPTG-RGSHELCGVMGRVDIITGTLGKAL--GGASGGFTTAR 253 (393)
T ss_pred cCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccCcCCCC-CchHHhcCCCCCCeEEEEEChHHh--hCCCcEEEEeC
Confidence 99999988 88999999999 9999999999643332211 111111 11124679999999987 46899999999
Q ss_pred HHHHHHHHHHhhhccC--CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeee
Q 012124 317 KHFVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394 (470)
Q Consensus 317 ~~~~~~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~ 394 (470)
+++++.+........+ +.++..+.++.++++. .+..++++++++++++++.+.|++. |+.+..+.+.+ +.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~i~ 327 (393)
T TIGR01822 254 KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEM----LEASNELRDRLWANTRYFRERMEAA-GFDIKPADHPI-IPVM 327 (393)
T ss_pred HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEE
Confidence 9999988764332222 2344445555666653 2234667888999999999999876 77765544444 4445
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--C--CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--D--DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~--~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++.. +..++++.|+++ ||.+. +..|. . ..++|++++. ++++|++++++|++++++++
T Consensus 328 ~~~~~-----------~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~ 391 (393)
T TIGR01822 328 LYDAV-----------LAQRFARRLLEE-GIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELG 391 (393)
T ss_pred eCCHH-----------HHHHHHHHHHHC-CeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 54321 567888888876 89887 54443 1 2469988876 89999999999999887653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=269.99 Aligned_cols=308 Identities=20% Similarity=0.240 Sum_probs=237.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEc
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 184 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~ 184 (470)
.+..++.++++..+++.. |+ |..++.+.+.+.+.+.+|. +++++++++|+.+++..++.++++|||.|+++
T Consensus 31 gl~~~~~~~~~~~~~~~~----~~---g~~~~~~~Le~~lA~~~g~--~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~ 101 (346)
T TIGR03576 31 GLAGGFKIDEEDLELLET----YV---GPAIFEEKVQELGREHLGG--PEEKILVFNRTSSAILATILALEPPGRKVVHY 101 (346)
T ss_pred cCCCChhHHHHHHHHHHH----hc---CCHHHHHHHHHHHHHHcCC--CcceEEEECCHHHHHHHHHHHhCCCCCEEEEC
Confidence 344578888888887765 32 5567777777777777774 67899999999999999999999999999974
Q ss_pred ---CCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 ---APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ---~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
.|+|+.+...++..|++++.+ .+++.++. .+++++|++ +++||+|.+++.+++++|+++|+++ |
T Consensus 102 ~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~-~ 168 (346)
T TIGR03576 102 LPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSK-E 168 (346)
T ss_pred CCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCceEEEE-ECCCCCCcccCHHHHHHHHHHHHHc-C
Confidence 579999999999999986432 14555433 245777777 4579999999999999999999999 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHH
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKA 341 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a 341 (470)
++||+||+|+.+..+.....+...+ +..++++|||| +++|+|+||+++++++++.+.+....+.++.+++.|.+
T Consensus 169 ~~livDEAy~~~~~~~~~~~~~~~~----~~divv~s~SK--alaG~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~a 242 (346)
T TIGR03576 169 AIVLVDDASGARVRRLYGQPPALDL----GADLVVTSTDK--LMDGPRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAA 242 (346)
T ss_pred CEEEEECCccccccccCCCCCHHHc----CCcEEEeccch--hccccceEEEEeCHHHHHHHHHhhcCcccCccHHHHHH
Confidence 9999999999865331111222222 22377889999 46899999999999999999998888777788999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHH
Q 012124 342 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 421 (470)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 421 (470)
+.++|+. .. .+.+++.++++++++.+.+++ +.+.++.++ |+|++++.. ++.+++..+++
T Consensus 243 a~~aL~~---~~--~~~~~~~l~~r~~~~~~~l~~---~~~~~~~~~-f~~~~~~~~------------~~~~~~~~ll~ 301 (346)
T TIGR03576 243 VVRALEE---FE--LSRIRDAFKRKEEVYLRLFDK---LNVERTPTG-FVIKGVEEE------------KLIEIGLDLLR 301 (346)
T ss_pred HHHHHhh---cc--HHHHHHHHHHHHHHHHHHHHh---CCCCcCCCe-EEEEeCCCC------------CHHHHHHHHHH
Confidence 9999974 12 356678889999988888874 344444555 699998642 45567777888
Q ss_pred cCCEEEECCCCCC-CCCcEEEEeecCHH---HHHHHHHHHHHHH
Q 012124 422 KAQVALVPGDAFG-DDTCIRISYAASLT---TLQAAVERIKKGL 461 (470)
Q Consensus 422 ~~gI~v~pg~~f~-~~~~iRls~~~~~~---~i~~~l~~l~~~l 461 (470)
++||.+.||..|. .++|+|++++.+++ +++.+++.|++-+
T Consensus 302 ~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 302 NYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred hCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 8899999998884 47899999998665 6888888887643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=276.28 Aligned_cols=331 Identities=15% Similarity=0.156 Sum_probs=243.8
Q ss_pred hcCCCeEEccCCCC-CCCChHHHHHHHHHHHHcCCC---CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 91 QAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFT---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 91 ~~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.+|+++|||+.|+| +++.++.+.+++.+++..... .|....|..++++.+.+.+.+.++ .+++|++++|+++.
T Consensus 13 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~G~~~~ 89 (360)
T TIGR00858 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG---TEAALLFSSGYLAN 89 (360)
T ss_pred ECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCCEEEECchHHHH
Confidence 36778999999975 344578899999998865222 222234444444444444444344 35688888886655
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCccc
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGS 242 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPtG~ 242 (470)
+ .++..++++||+|++++|+|+.+...++..|++++.++. +|++.+++.+++ +++++++++++||||.
T Consensus 90 ~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~ 161 (360)
T TIGR00858 90 V-GVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDGVFSMDGD 161 (360)
T ss_pred H-HHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeCCccCCCC
Confidence 5 567788899999999999999999999999999988763 588999888854 4677888889999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc--ccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~--~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
..+ +++|.++|+++ +++||+||+|..+.++.... .....+.+ .+++|+++||||.++++| ||++++++++
T Consensus 162 ~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~g---G~~~~~~~~~ 233 (360)
T TIGR00858 162 IAP---LPQLVALAERY-GAWLMVDDAHGTGVLGEDGRGTLEHFGLKP-EPVDIQVGTLSKALGSYG---AYVAGSQALI 233 (360)
T ss_pred CcC---HHHHHHHHHHc-CcEEEEECcccccCcCCCCCchHHhcCCCc-cCCcEEEEechhhhhccC---cEEEcCHHHH
Confidence 888 88899999999 99999999998766543211 22222333 478999999999998656 9999999999
Q ss_pred HHHHHHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 321 AACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 321 ~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
+.+......+ ..+.++..+.++.++++. ....++++++++++++.+.+.|+++ ++.+.++ .+.++|+.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~-~~~~~~~~~~~~ 307 (360)
T TIGR00858 234 DYLINRARTLIFSTALPPAVAAAALAALEL----IQEEPWRREKLLALIARLRAGLEAL-GFTLMPS-CTPIVPVIIGDN 307 (360)
T ss_pred HHHHHhCccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHHc-CCccCCC-CCCEEEEEeCCH
Confidence 8886544332 223455555566666753 2234567889999999999999987 6766544 456688888653
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHH
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
. +..+++++|.++ ||.+.++..++. .+++|++++. +++++++++++|+
T Consensus 308 ~-----------~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 308 A-----------SALALAEELQQQ-GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred H-----------HHHHHHHHHHHC-CeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 1 567888888765 999998766542 3589999996 8999999998763
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=274.97 Aligned_cols=337 Identities=20% Similarity=0.216 Sum_probs=254.6
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|++++||+.|+ +++.+++.+.+++.+++.+. ...|....|..++++.+++++.+.+|. ++.|++++|+ +++
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~~~i~~~sG~-~a~ 106 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---EAALVFQSGF-NTN 106 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---CcEEEECcHH-HHH
Confidence 567889999987 68878899999999988642 345777889999999999999988773 4578888885 556
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCcccC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 243 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPtG~~ 243 (470)
..++.+++++||.|++++|+|+.+...+...|.+++.++ .+|++.+++.+++ ++++|++++++||||..
T Consensus 107 ~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~ 179 (385)
T TIGR01825 107 QGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDV 179 (385)
T ss_pred HHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCc
Confidence 678888899999999999999999888888888887664 2688888877643 67788888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 323 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l 323 (470)
.+ +++|.++|++| |+++|+||+|+.+.++.........++-..+.+++++||||.++++| ||+++++++++.+
T Consensus 180 ~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~~~~~ 252 (385)
T TIGR01825 180 AP---LPEIVELAERY-GAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKELIEYL 252 (385)
T ss_pred cC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHHHHHH
Confidence 98 78899999999 99999999998766542211111111112478899999999998665 9999999999988
Q ss_pred HHHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCC
Q 012124 324 NKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 401 (470)
Q Consensus 324 ~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~ 401 (470)
......+ ....+++.+.++.++++.. .+. .+..++++++++++.+.|+++ |+++..+.+.+ +++.++...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~~-- 324 (385)
T TIGR01825 253 KNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKL-GYDTGGSETPI-TPVVIGDEK-- 324 (385)
T ss_pred HHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEECCHH--
Confidence 7654322 2234667777777777641 111 245666778889999999887 88877666665 444444221
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++++.|+++ ||.+. +..|.. .+++|++++. +++++++++++|+++++++.
T Consensus 325 ---------~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~~ 383 (385)
T TIGR01825 325 ---------AAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKELG 383 (385)
T ss_pred ---------HHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 456788988887 99885 444432 2589998763 99999999999999987643
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=280.86 Aligned_cols=351 Identities=20% Similarity=0.259 Sum_probs=262.1
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcCC-------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|++++||++++ +++..++.+++++.+++.+.. ..|++..+..+|+++|++++. .++.|++++|.
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~ 179 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGL 179 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHH
Confidence 567899999886 577779999999999998722 235666678889999998874 45789999888
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCc-eEEEEcCCCCCc
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKS-RLLILCSPSNPT 240 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~-~~i~l~~p~nPt 240 (470)
+ ++..++.+++++||.|+++...|..+...+...|.+++.++.++.+++..+++.+++.. ++++ ++|++..++|+|
T Consensus 180 ~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~ 258 (481)
T PLN02822 180 S-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNS 258 (481)
T ss_pred H-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCC
Confidence 8 56888999999999999988877777778888999999998753332223333333222 1234 677888889999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc--cccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT--SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~--~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|.+.+ +++|.++|++| |+++|.||+|+...++..+.. ....+.. .+..|+++||||.+|++| ||++++++
T Consensus 259 G~i~~---L~~i~~l~~k~-~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~-~~~dii~~s~sKalg~~G---G~i~g~~~ 330 (481)
T PLN02822 259 GQIAP---LDEIVRLKEKY-RFRVLLDESNSFGVLGKSGRGLSEHFGVPI-EKIDIITAAMGHALATEG---GFCTGSAR 330 (481)
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCChHHHcCCCC-CCCeEEEecchhhhhhCC---eEEEcCHH
Confidence 99999 88999999999 999999999997767532221 1112221 256799999999999888 99999999
Q ss_pred HHHHHHHHhhhccCCC--ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 319 FVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
+++.+........++. ++..|.++.++|+. .+. ..++++.++++++++.+.|++.+|+.+..+.+++++++.++
T Consensus 331 ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~---l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~ 406 (481)
T PLN02822 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV---LED-NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLE 406 (481)
T ss_pred HHHHHHhcCCceeeccccCHHHHHHHHHHHHH---HHh-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeC
Confidence 9998876555555554 47778888888864 122 25788899999999999999877888877778888999886
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC--CCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD--AFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~--~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..+. .. +......+++++|++++||.+.|+. .|+. +.++|++++. ++++|++++++|+++++++.
T Consensus 407 ~~~~~-~~--~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 407 KSTGS-AK--EDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred CCccc-cc--chHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 42100 00 0000136788999866799999863 3432 3579998774 99999999999999988754
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=274.33 Aligned_cols=352 Identities=18% Similarity=0.173 Sum_probs=265.4
Q ss_pred HHHHHhcCCCeEEccCCCC--CCCCh---HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEe
Q 012124 86 ATALAQAGVSVIRLAAGEP--DFDTP---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS 160 (470)
Q Consensus 86 ~~~~~~~~~~~i~l~~g~~--~~~~~---~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it 160 (470)
.+.+.+.|.+++.|..+++ |+.++ .++.++..+++..+...|++..|.++|++++++++. .+++++|
T Consensus 3 ~~~l~~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g--------~~~vv~t 74 (431)
T cd00617 3 ERALKEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFG--------FKHIIPT 74 (431)
T ss_pred HHHHHHcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHC--------CCeEEEc
Confidence 4566778999999999999 77665 477777777777777789999999999999999973 2589999
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCC--------CccCHHhHhhhccCC----c
Q 012124 161 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTEK----S 228 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~--------~~~d~~~l~~~l~~~----~ 228 (470)
+|+++|+.+++.++++|||+| +++|.|..+...+...|++++.++++++.+ +.+|++.|+++++++ +
T Consensus 75 ~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~ 153 (431)
T cd00617 75 HQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENI 153 (431)
T ss_pred CCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCc
Confidence 999999999999999999988 689999999999999999999999975432 349999999999765 7
Q ss_pred eEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc--ccc-----CCCCcccccccCCCCCceEEEeccC
Q 012124 229 RLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--IIY-----APATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 229 ~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--~~~-----~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
++|++++|+||+ |.++|.+++++|.++|++| |++||+|++... ..| ++....++. +.++.+.|++
T Consensus 154 ~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~-gi~li~DaAr~~~na~~i~~r~~g~~~~si~------ei~~e~~s~s 226 (431)
T cd00617 154 PYIVLTITNNTAGGQPVSMANLREVRELAHKY-GIPVVLDAARFAENAYFIKEREEGYRDKSIA------EIAREMFSYA 226 (431)
T ss_pred cEEEEECCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhHhhhhhhhcccccccCCCHH------HHHHHhhccC
Confidence 889999999998 9999999999999999999 999999999432 112 122222222 2345578888
Q ss_pred cccccccce------eeEEEcCH-HHHHHHHHHh----hhccCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012124 301 KAFAMTGWR------LGYIAGPK-HFVAACNKIQ----SQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 368 (470)
Q Consensus 301 K~~~~~G~r------~G~~~~~~-~~~~~l~~~~----~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
|.+.+.|+| .||+++++ +++++++... ....++ .+.....+++..|.... + .+.+.++++ +++
T Consensus 227 d~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~--~--~~~l~~~~~-~r~ 301 (431)
T cd00617 227 DGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV--E--EDYLRHRVE-QVR 301 (431)
T ss_pred CEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc--c--HHHHHHHHH-HHH
Confidence 888888887 56999986 5888876432 111112 23333333333565421 1 233444444 558
Q ss_pred HHHHHhccCCCCeecCCCceEEEeeeccCccCC-cccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCC-C-----------
Q 012124 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLDKAQVALVP-GDAF-G----------- 434 (470)
Q Consensus 369 ~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f-~----------- 434 (470)
++.+.|.+. |+.+..|.+|+++|++.+..... .... .++.+++.+|+++.||.+.- |... +
T Consensus 302 ~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~----~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~ 376 (431)
T cd00617 302 YLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQ----FPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYP 376 (431)
T ss_pred HHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCccc----CcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCC
Confidence 899999988 99999999999999998753110 0001 15889998999999998654 4321 1
Q ss_pred CCCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012124 435 DDTCIRISYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 435 ~~~~iRls~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
....+||++.. +.+.++...+.|..++++
T Consensus 377 ~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 377 ELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred ccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 12579999986 889999999999888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=265.49 Aligned_cols=332 Identities=19% Similarity=0.193 Sum_probs=243.2
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+++|||+.|++ ++.+++.+++++.+++... ...|....|..++++.+++.+.+.+| .++.|++++| ++++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~g-~~~~ 112 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG---AERALLFSSG-YAAN 112 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcH-HHHH
Confidence 5778999999974 4556788999999988652 22233344666677777777766666 2455555554 5566
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~ 244 (470)
..++..++++||.|++++|+|+.+...++..|++++.++. .|++.+++.+++ +++++++.+++||||...
T Consensus 113 ~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~ 185 (385)
T PRK05958 113 LAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVFSMDGDLA 185 (385)
T ss_pred HHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecccCCCCcC
Confidence 6677888999999999999999999999999999988875 378889888864 245555667899999988
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
+ +++|+++|++| |++||+||+|+.+.++.. .......++. .+++|++.||||.++++| ||+++++++++.
T Consensus 186 ~---l~~i~~ia~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~~~G---g~~~~~~~~~~~ 257 (385)
T PRK05958 186 P---LAELVALARRH-GAWLLVDEAHGTGVLGPQGRGLAAEAGLAG-EPDVILVGTLGKALGSSG---AAVLGSETLIDY 257 (385)
T ss_pred C---HHHHHHHHHHh-CCEEEEECcccccccCCCCCchHHhhCCCC-CCceEEEEechhhcccCC---cEEEcCHHHHHH
Confidence 8 88999999999 999999999987655421 1122122332 467899999999998666 999999998888
Q ss_pred HHHHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+....... ..+.+++.+.++.++++.. ... .++.+.+.++++.+.+.|+++ |+++..+.+++ +|+.+++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~~~~~~~~- 330 (385)
T PRK05958 258 LINRARPFIFTTALPPAQAAAARAALRIL---RRE-PERRERLAALIARLRAGLRAL-GFQLMDSQSAI-QPLIVGDNE- 330 (385)
T ss_pred HHHhCccceecCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCHH-
Confidence 76543222 2335555555566666641 111 567788899999999999887 67776666554 677776431
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~---~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++++.|.++ ||.+.++..+. .++++|++++. +++++++++++|+++
T Consensus 331 ----------~~~~~~~~l~~~-gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 331 ----------RALALAAALQEQ-GFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred ----------HHHHHHHHHHHC-CceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 567899988765 99999865443 23689999984 899999999999875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=267.96 Aligned_cols=338 Identities=17% Similarity=0.191 Sum_probs=247.0
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||..|.+. +.. ++.+.+++.+++..... ....+..++++.+++++.+..| .+++++|+|+++++.
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~gg~eA~~ 110 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIH--TSNLYYIEPQEELAEKLVELSG----MDKVFFCNSGAEANE 110 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhhcC----CCEEEECCCcHHHHH
Confidence 57788999998654 334 58899999998865321 1222346899999999987644 379999999999999
Q ss_pred HHHHHhcCCC-------CeEEEcCCCCCChHHHHHHcCCEE-E---EecCcCCCCC----ccCHHhHhhhccCCceEEEE
Q 012124 169 QAVLAVCSPG-------DEVIIPAPFWVSYPEMARIADATP-V---ILPTRISENF----LLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 169 ~~~~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~g~~~-~---~v~~~~~~~~----~~d~~~l~~~l~~~~~~i~l 233 (470)
.+++.+...+ ++|++.+++|+++.......+... . ..++. .++ ..|++.+++++++++++|++
T Consensus 111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~~~~~vii 188 (396)
T PRK02627 111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITDKTAAVML 188 (396)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCCCeEEEEE
Confidence 9999765433 679999999998876554443322 1 11211 111 12899999999888999999
Q ss_pred cCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 234 CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 234 ~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
..++||+| .+++.+.+++|.++|++| +++||+||+|.+|.+.+.. .++....- ... +.||||.++ +|+|+||
T Consensus 189 ~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DE~~~g~g~~g~~-~~~~~~~~-~pd---i~t~sK~~~-~G~rig~ 261 (396)
T PRK02627 189 EPIQGEGGVNPADKEYLQALRELCDEN-GILLILDEVQTGMGRTGKL-FAYQHYGI-EPD---IMTLAKGLG-GGVPIGA 261 (396)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhcCCCccCce-eeehhcCC-CCC---EEEEcchhh-CCcccEE
Confidence 88899999 689999999999999999 9999999999987655421 12111111 112 457999998 9999999
Q ss_pred EEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 313 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++++++++.+.......+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.+.+++.+... +..|+++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~ 339 (396)
T PRK02627 262 VLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKYPGIKEV-RGLGLMIG 339 (396)
T ss_pred EEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCeeee-ccCcEEEE
Confidence 999999998887655556778999999999999875332 3445555555555555555554444333322 23577789
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
++++. +..+++++|+++ ||.+.|+. .+++|++++ .+++++++++++|+++++++
T Consensus 340 i~~~~-------------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 340 IELDR-------------PAAEIVKKALEK-GLLINVTG----DNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred EEecC-------------cHHHHHHHHHHC-CeEEeecC----CCEEEEECCcccCHHHHHHHHHHHHHHHHhh
Confidence 98842 677899988877 99999864 368999875 49999999999999998764
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=248.38 Aligned_cols=359 Identities=17% Similarity=0.198 Sum_probs=272.4
Q ss_pred ccccCCchHHHHHHHHHHHHhcCC-CeEEccCCCCC---CCC--hHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGV-SVIRLAAGEPD---FDT--PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~g~~~---~~~--~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~ 143 (470)
+...++.++..+.+.. .++++ +.|||+.|.-- -.+ -+.+.++-+..+.+ ....|.|..|.+++++++++.
T Consensus 5 i~~~p~DpIlgL~e~f---~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~l 81 (396)
T COG1448 5 IEAAPADPILGLKEAF---KADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKL 81 (396)
T ss_pred cccCCCCchhHHHHHH---hcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHH
Confidence 3444555555554443 33333 67999999621 112 35555555555544 357899999999999999999
Q ss_pred HHHHcCCC---CCCCcE--EEecChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccC
Q 012124 144 LKEENGLS---YTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 216 (470)
Q Consensus 144 l~~~~g~~---~~~~~i--~it~g~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 216 (470)
+ +|.+ +..++| +-|.|++.||.+....+. .|..+|++++|+|+++..+++..|.++..+|.....+..+|
T Consensus 82 l---FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~d 158 (396)
T COG1448 82 L---FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLD 158 (396)
T ss_pred h---cCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecccccccccc
Confidence 8 6744 344444 568899999998887763 46678999999999999999999999999999877777799
Q ss_pred HHhHhhhccC--CceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCCCc
Q 012124 217 PKVLESKLTE--KSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWER 292 (470)
Q Consensus 217 ~~~l~~~l~~--~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~~~ 292 (470)
++.+...++. ...+|++ ...|||||..++.++|++|+++.++. +.+.+.|-+|.+|.-+-. +...+..+......
T Consensus 159 f~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~ 237 (396)
T COG1448 159 FDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQGFADGLEEDAYALRLFAEVGPE 237 (396)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhhhccchHHHHHHHHHHHHhCCc
Confidence 9999888854 3334444 55699999999999999999999999 999999999999654321 22233333332344
Q ss_pred eEEEeccCcccccccceeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHH---HHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKA 362 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~---~~~~~~~ 362 (470)
+++..||||+||+.|-|+|.+.. +.+ +...+....+...++||..+...++..|++.++...| +..++.+
T Consensus 238 ~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~R 317 (396)
T COG1448 238 LLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQR 317 (396)
T ss_pred EEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998653 333 4445566666677789999999999999876543344 6788999
Q ss_pred HHHHHHHHHHHhccC-C--CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012124 363 FRERRDFLVKSFGEL-E--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~-~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~i 439 (470)
+.+.|+.|.+.|++. + .+.+...+.|||.+..+ + .+-+.+|.+++||++....
T Consensus 318 i~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl---------------s-~~QV~rLree~~IY~v~sG-------- 373 (396)
T COG1448 318 ILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL---------------S-PEQVDRLREEFGIYLVASG-------- 373 (396)
T ss_pred HHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC---------------C-HHHHHHHHHhccEEEecCC--------
Confidence 999999999999883 2 37888889999887644 3 3445678999999988754
Q ss_pred EEEeec-CHHHHHHHHHHHHHH
Q 012124 440 RISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 440 Rls~~~-~~~~i~~~l~~l~~~ 460 (470)
|+|++. ++..++...+.|.++
T Consensus 374 Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 374 RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred eeeeccCChhhHHHHHHHHHhh
Confidence 999999 999999998888765
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=261.12 Aligned_cols=333 Identities=20% Similarity=0.200 Sum_probs=243.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC--CCCCCCC-------cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~--~~~y~~~-------~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+.+.|..+.-. ++|+.+.+++.+.+... ...++.. ....++|+.+++++ |.. ++++|++|+|+++
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL----NAP-DAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCChHH
Confidence 45777776655 35778888888877532 1122221 12345777777775 431 4689999999999
Q ss_pred HHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 166 SILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 166 al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
++++++.++ +++||+|++++|+|++ +...++..|++++.++++.+ +.+|++.++++++++++++++++++
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t~lv~i~~~~ 167 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGAD--LLPDIRQLPELLTPRTRILALGQMS 167 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCC--CCcCHHHHHHHhccCceEEEEECcc
Confidence 999999987 4799999999999976 34556789999999998643 4589999999999899999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||..++ +++|+++|+++ |+++|+|++|+...+ ...+.. .+..+++.|++|.+|.+| +||+++++
T Consensus 168 n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 233 (398)
T TIGR03392 168 NVTGGCPD---LARAITLAHQY-GAVVVVDGAQGVVHG----PPDVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKT 233 (398)
T ss_pred ccccccCC---HHHHHHHHHHc-CCEEEEEhhhhcCCC----CCChhh----cCCCEEEEecccccCCCc--eEEEEEcH
Confidence 99999999 77899999999 999999999975322 122222 234578888999888555 89999999
Q ss_pred HHHHHHHHHh---------------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 318 HFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 318 ~~~~~l~~~~---------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++++.+.... +.....++.....++.++++.- .+...+++.++.++.++++.+.|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l--~~~g~~~i~~~~~~l~~~l~~~l~~ 311 (398)
T TIGR03392 234 ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWL--TDIDIAAAEAWSVSLADLAEERLAQ 311 (398)
T ss_pred HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 8887663211 1111234444555555555421 0222456677778888999999988
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------CCCcEEEEeec--C
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------DDTCIRISYAA--S 446 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------~~~~iRls~~~--~ 446 (470)
++|+.+..+..+..+++.+++. +..++.+.|.+ +||.+.+|..+. .++++|+|++. +
T Consensus 312 l~g~~~~~~~~~~i~~~~~~~~------------~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t 378 (398)
T TIGR03392 312 LPGFRSFRCPGSSLLAFDFAGV------------HHSDLAALLAE-SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNT 378 (398)
T ss_pred CCCeEEeCCCCCcEEEEEeCCc------------CHHHHHHHHHh-CCEEEecCccchHHHHHHhCCCCEEEEEeeccCC
Confidence 8888776544445566677643 56788888765 599999987552 35799999986 8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012124 447 LTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~ 464 (470)
++|++.+++.|+++++.+
T Consensus 379 ~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 379 QQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=262.44 Aligned_cols=333 Identities=19% Similarity=0.212 Sum_probs=244.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCC--C-------CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT--P-------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~--~-------~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+.+.|..+.-. +.|+.+.+++.+.+.+...... . .....++|+.+++++ |.. ++++|++|+|+++
T Consensus 19 ~~~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----NAP-DAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCccc-CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CCC-CCCEEEEECCHHH
Confidence 35777776655 3577888888888764221110 0 111345666666664 532 6789999999999
Q ss_pred HHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 166 SILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 166 al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
++.+++.++ +++||+|++.+|.|++ +...++..|++++.++.+. ++.+|++.+++.++++++++++++++
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~i~~~~ 170 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRTRILALGQMS 170 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCcEEEEEeCCc
Confidence 999999997 4799999999999976 3455678899999999863 45689999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||..++ +++|+++|+++ |+++|+|++|+...+ ...+.. .+..+++.|++|.+|.+| +||+++++
T Consensus 171 n~tG~~~~---~~~i~~l~~~~-g~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 236 (401)
T PRK10874 171 NVTGGCPD---LARAITLAHQA-GMVVMVDGAQGAVHF----PADVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKS 236 (401)
T ss_pred ccccCcCC---HHHHHHHHHHc-CCEEEEECCcccccc----cCCchh----cCCCEEEEecccccCCCc--cEEEEEch
Confidence 99999999 78899999999 999999999964222 122222 235588899999888556 69999999
Q ss_pred HHHHHHHHHh---------------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 318 HFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 318 ~~~~~l~~~~---------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++++.+.... .....+++...+.++.++++.- .+....++.++.++.++++.+.|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l--~~~g~~~~~~~~~~l~~~l~~~l~~ 314 (401)
T PRK10874 237 ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWL--ADIDINQAESWSRSLATLAEDALAK 314 (401)
T ss_pred HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 8887654221 1112234555666666666531 0222445677777888999999998
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------CCCcEEEEeec--C
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------DDTCIRISYAA--S 446 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------~~~~iRls~~~--~ 446 (470)
++|+.+..+..+.++++.+++. +..++.+.|.+ +||.+.+|..+. ..+++|+|++. +
T Consensus 315 ~~g~~~~~~~~~~i~~~~~~~~------------~~~~~~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt 381 (401)
T PRK10874 315 LPGFRSFRCQDSSLLAFDFAGV------------HHSDLVTLLAE-YGIALRAGQHCAQPLLAALGVTGTLRASFAPYNT 381 (401)
T ss_pred CCCEEEeCCCCCcEEEEEECCc------------CHHHHHHHHHH-CCcEEeccccchHHHHHHhCCCCEEEEEecccCC
Confidence 8898776544444566677643 56788877755 599999988653 35899999997 8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012124 447 LTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~ 464 (470)
++|++.+++.|+++++.+
T Consensus 382 ~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 382 QSDVDALVNAVDRALELL 399 (401)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=258.29 Aligned_cols=328 Identities=19% Similarity=0.290 Sum_probs=230.1
Q ss_pred eEEccCCCCCCCChHHHHHHHHHH-HHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINA-IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~-~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
+++|+.|.|+. +++.+.+++.+. .......| .....+|++++++++.. +.+++++++++++..++.++
T Consensus 7 ~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 7 VVDLRSDTVTK-PTDAMRAAMANAEVDDDVLGY--DPTALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhcccccC-CCHHHHHHHHhccCCCcccCC--CHHHHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHH
Confidence 47899999986 667788887764 22223334 33378999999999742 23455555555566777777
Q ss_pred cC-CCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-------CCceEEEEcC-CCCCccc
Q 012124 175 CS-PGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLT-------EKSRLLILCS-PSNPTGS 242 (470)
Q Consensus 175 ~~-~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-------~~~~~i~l~~-p~nPtG~ 242 (470)
++ +||+|++++|+|..... .+...|++++.+|.++ ++.+|+|.+++.++ +++++|++++ ++||||.
T Consensus 76 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~ 153 (353)
T PLN02721 76 CDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGR 153 (353)
T ss_pred ccCCCCeEEEcCccceehhcccchhhhcCceeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCc
Confidence 77 99999999999875554 5678899999998753 34589999999997 5889999866 5789999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE-EEcCHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVA 321 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~-~~~~~~~~~ 321 (470)
++|.+++++|+++|+++ |++||+|++|........ ..+...+.. +...++.||||.++. ++|| +++++++++
T Consensus 154 ~~~~~~l~~l~~l~~~~-g~~livD~a~~~~~~~~~-~~~~~~~~~--~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 226 (353)
T PLN02721 154 CLSVEYTDKVGELAKRH-GLKLHIDGARIFNASVAL-GVPVHRLVK--AADSVSVCLSKGLGA---PVGSVIVGSKSFIR 226 (353)
T ss_pred cccHHHHHHHHHHHHHc-CCEEEEEchhhhcchhhh-CCCHHHHhh--hCCEEEEecccccCC---ceeeEEecCHHHHH
Confidence 99999999999999999 999999999853211100 111111111 222445679999862 3565 678999999
Q ss_pred HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee--cCCCceEEEeeeccCcc
Q 012124 322 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 322 ~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~ 399 (470)
.+...+.....+.+...+.++..... .+++.+++++. .++++.+.+.|++++++.+ ..+.++ ++|++++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~ 300 (353)
T PLN02721 227 KAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLEDD-HKKAKLLAEGLNQIKGLRVNVAAVETN-IVYFDITDGS 300 (353)
T ss_pred hHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHhCCCcEEecCCccce-EEEEEccCCc
Confidence 88777665444444444333332222 13445544444 5567889999988877744 444444 5899987520
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
..+..+++++|.+ +||.+.|+. .+++|++++. +++++++++++|++++..
T Consensus 301 ---------~~~~~~~~~~L~~-~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 301 ---------RITAEKLCKSLEE-HGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ---------cccHHHHHHHHHh-CCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 0157789998874 599999974 4689999973 899999999999988753
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=257.98 Aligned_cols=318 Identities=18% Similarity=0.234 Sum_probs=230.0
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
+|||+++..+. +++.+++++.+... ....|++..+..+|+++|++++ |+ +.+++++|+++++.+.+.+++
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~~-~~~~Y~~~~~~~~L~~~la~~~----g~----~~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAPV-GDDVYGDDPTVNALQDYAAELS----GK----EAALFLPTGTQANLVALLSHC 70 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhccC-CCcccCCCHHHHHHHHHHHHHh----CC----CeEEEeCchHHHHHHHHHHhc
Confidence 47899999887 78889999877543 4567878889999999999985 32 345678888888888888889
Q ss_pred CCCCeEEEcCCCCCC-hHHH-HHHcC-CEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCH
Q 012124 176 SPGDEVIIPAPFWVS-YPEM-ARIAD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~-~~~~-~~~~g-~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~ 246 (470)
.+||+|+++.|+|.. +... ....| ++++.++.+ .++.+|++.|++++++ ++++|++++|+ ||.+++.
T Consensus 71 ~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~ 146 (333)
T PRK10534 71 ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPR 146 (333)
T ss_pred CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCH
Confidence 999999998888753 3211 23333 677888775 3567999999999865 58899998765 5999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceee-EEEcCHHHHHHHHH
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNK 325 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~~~~~l~~ 325 (470)
+++++|+++|+++ +++||+||+|........ ......+....+.+ +.||||.++++ +| |+++++++++.+.+
T Consensus 147 ~~l~~i~~~~~~~-~~~lvvDEA~~~~~~~~~-~~~~~~~~~~~~~~--~~s~SK~~~~~---~G~~~~~~~~~i~~~~~ 219 (333)
T PRK10534 147 EYLKQAWEFTRER-NLALHVDGARIFNAVVAY-GCELKEITQYCDSF--TICLSKGLGTP---VGSLLVGNRDYIKRARR 219 (333)
T ss_pred HHHHHHHHHHHHc-CCeEEeeHHHHHHHHHHc-CCCHHHHHhcCCEE--EEEeEcCCCCc---ccceEEcCHHHHHHHHH
Confidence 9999999999999 999999999863211000 11122222111323 34899998753 68 68899999999988
Q ss_pred HhhhccCCC--ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcc
Q 012124 326 IQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 403 (470)
Q Consensus 326 ~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 403 (470)
++..+..+. +.+.|.++...|++ ..+.+.+ ..+.++++.+.|+++ |+.+.+| .++|+|++++..
T Consensus 220 ~~~~~~~~~~~~~~~~a~~~~~l~~------~~~~~~~-~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~~~~~~----- 285 (333)
T PRK10534 220 WRKMTGGGMRQAGILAAAGLYALKH------NVARLQE-DHDNAAWLAEQLREA-GADVMRQ-DTNMLFVRVGEE----- 285 (333)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHh------hHHHHHH-HHHHHHHHHHHHHhC-CCccCCC-CceEEEEECCch-----
Confidence 776554332 33556666665542 1222333 344678899999988 8888776 477799998742
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.+ .||.+.||. ++|++.+ .+.+++++++++|++++.
T Consensus 286 -------~~~~~~~~l~~-~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 286 -------QAAALGEYMRE-RNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred -------hHHHHHHHHHH-cCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 45677766654 599999873 5788776 389999999999998764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=263.92 Aligned_cols=333 Identities=18% Similarity=0.177 Sum_probs=236.8
Q ss_pred CCCeEEccCCC-CCCC-----ChHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 93 GVSVIRLAAGE-PDFD-----TPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~-----~~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+++.++|++.+ ..+. +++.+.+++.+.-.. ....|+...+..+|++.+|++++ .++.|++++|.
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G~ 171 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMGY 171 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCHH
Confidence 45778888876 3333 234555555554221 12347778888999999999974 35678887776
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-------CC-----ceEE
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-------EK-----SRLL 231 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-------~~-----~~~i 231 (470)
...+ .++.+++++||.|++++|+|+++...++..|++++.++.+ |++.+++.++ ++ .+++
T Consensus 172 ~an~-~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~l 243 (489)
T PLN02483 172 ATNS-TIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKII 243 (489)
T ss_pred HHHH-HHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEE
Confidence 5544 6778889999999999999999999999999999999863 4455544432 22 2556
Q ss_pred EEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC--CCcccccccCCCCCceEEEeccCcccccccc
Q 012124 232 ILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 232 ~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
+++.+ .|++|...+ +++|+++|++| +++||+||+|+...++. ........++. .+++|+++||||++|++|
T Consensus 244 ivve~v~s~~G~~~~---l~~I~~la~~~-~~~livDEa~s~g~~G~~G~g~~~~~~v~~-~~~dI~~~SfSKs~g~~G- 317 (489)
T PLN02483 244 VIVEGIYSMEGELCK---LPEIVAVCKKY-KAYVYLDEAHSIGAVGKTGRGVCELLGVDP-ADVDIMMGTFTKSFGSCG- 317 (489)
T ss_pred EEECCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECcCccCccCCCCCchHHhcCCCc-ccCcEEEEecchhcccCc-
Confidence 55554 689999988 88999999999 99999999998543322 12223333333 467899999999998776
Q ss_pred eeeEEEcCHHHHHHHHHHhhhc--c-CCCChHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 309 RLGYIAGPKHFVAACNKIQSQF--T-SGASSISQKAGVAALG---LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~~~~~--~-~~~~~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
||+++++++++.+....... . ..++...|. +.+.|+ ... ..++..+.++.++++++++.+.|+++ |+.+
T Consensus 318 --G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~-~~aaL~~l~~~~-g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v 392 (489)
T PLN02483 318 --GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQ-VISAIKVILGED-GTNRGAQKLAQIRENSNFFRSELQKM-GFEV 392 (489)
T ss_pred --eEEEcCHHHHHHHHHhCccccccCCcCHHHHHH-HHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 99999999999988764322 2 223334443 444442 111 12345566788999999999999998 8877
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-C---CCcEEEEeec--CHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-D---DTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-~---~~~iRls~~~--~~~~i~~~l~~ 456 (470)
..+.++..+|+.+.... +..++++.|+++ ||.+.| ..|. . .+++|++++. ++++|++++++
T Consensus 393 ~~~~~sp~~~l~l~~~~-----------~~~~~~~~Ll~~-GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~ 459 (489)
T PLN02483 393 LGDNDSPVMPIMLYNPA-----------KIPAFSRECLKQ-NVAVVV-VGFPATPLLLARARICISASHSREDLIKALEV 459 (489)
T ss_pred cCCCCCCEEEEEECCHH-----------HHHHHHHHHHHC-CcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 66666666666654321 456788888876 999997 4442 2 3689999885 99999999999
Q ss_pred HHHHHHhh
Q 012124 457 IKKGLLTL 464 (470)
Q Consensus 457 l~~~l~~~ 464 (470)
|+++++.+
T Consensus 460 L~~~~~~~ 467 (489)
T PLN02483 460 ISEVGDLV 467 (489)
T ss_pred HHHHHHHh
Confidence 99998764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=257.42 Aligned_cols=332 Identities=17% Similarity=0.179 Sum_probs=237.3
Q ss_pred CCCeEEccCCC-CCCCChHHHHHHHHHHHHcCC-------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|++.++|++++ .++.+++.+++++.+++.... ..|+......+|++.+++++ | .++.|++++|+
T Consensus 45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g---~~~~i~~~sG~- 116 (410)
T PRK13392 45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----G---KESALLFTSGY- 116 (410)
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----C---CCCEEEECcHH-
Confidence 45678888775 566678999999999886522 12322223456777777765 4 24677777775
Q ss_pred HHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc----cCCceEEEEcCCCC
Q 012124 165 QSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL----TEKSRLLILCSPSN 238 (470)
Q Consensus 165 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l----~~~~~~i~l~~p~n 238 (470)
+++..++..+. .+||.|+++...|..+...++..|+++..++. + |.+.+++.+ .+++++|++++|+|
T Consensus 117 ~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~~~~~t~~v~i~~~~n 189 (410)
T PRK13392 117 VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH---N----DLADLEEQLASVDPDRPKLIAFESVYS 189 (410)
T ss_pred HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC---C----CHHHHHHHHHhccCCCCEEEEEeCCCC
Confidence 56666666664 48998888877787777788889998877653 2 344444433 35789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc-eEEEeccCcccccccceeeEEEcCH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|||.+++ +++|.++|+++ ++++|+||+|....++... ..+....+..++ .++++||||.+|++| ||+++++
T Consensus 190 ~tG~~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~g-~g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~ 261 (410)
T PRK13392 190 MDGDIAP---IEAICDLADRY-NALTYVDEVHAVGLYGARG-GGIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASA 261 (410)
T ss_pred CCccccc---HHHHHHHHHHc-CCEEEEECCccccCcCCCC-CchhhhccCCCCCcEEEEEChHhhhccc---chhhcCH
Confidence 9999999 88889999999 9999999999954443221 112121111123 388999999999888 9999999
Q ss_pred HHHHHHHHHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec
Q 012124 318 HFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 318 ~~~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~ 395 (470)
++++.+.+....+ +.+.+++.+.++.++|+. .+.....++.++++++++.+.|+++ |+++.++.++++ .+.+
T Consensus 262 ~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-~i~~ 335 (410)
T PRK13392 262 DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH----LKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSPSHIV-PVMV 335 (410)
T ss_pred HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEE-EEEe
Confidence 9999888766432 444566778888888875 2223455677889999999999887 888776777764 3334
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+... +..+++++|++++||.+.++..... ..++|++++. ++++++.+++.|+++++++
T Consensus 336 ~~~~-----------~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 336 GDPT-----------LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCHH-----------HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 3210 3567888887666999998654332 3689999974 9999999999999998764
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-30 Score=254.25 Aligned_cols=337 Identities=15% Similarity=0.190 Sum_probs=240.1
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+.+|.. .+.. ++.+.+++.+++.+... .+. ....+....+++.+.+.. ..+++++++|+++|+.
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~ 102 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH-VSN-LYRIPEQERLAERLVENS----FADKVFFTNSGAEAVE 102 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCc-ccc-ccCChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHH
Confidence 5677899988742 2333 78999999999875221 111 122345556666665432 2469999999999999
Q ss_pred HHHHHh----cCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCc-C-CCCCc----cCHHhHhhhccCCceEEEEc
Q 012124 169 QAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADATPVILPTR-I-SENFL----LDPKVLESKLTEKSRLLILC 234 (470)
Q Consensus 169 ~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~----~d~~~l~~~l~~~~~~i~l~ 234 (470)
.+++.+ ..+|| +|++.+++|+++.......+......+.. + ..++. .|++.+++.+++++++|+++
T Consensus 103 ~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avive 182 (389)
T PRK01278 103 CAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIE 182 (389)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEe
Confidence 998876 45676 89999999999887666554432222110 0 11121 58999999998889999998
Q ss_pred CCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccccccceeeE
Q 012124 235 SPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 235 ~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
.++||+| .++|.+.+++|.++|++| |+++|+||+|.++.+.+.... ....+.+ + +.||||.++ +|+|+||
T Consensus 183 p~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~~~~~~~~~p--d----i~t~sK~l~-~G~~ig~ 254 (389)
T PRK01278 183 PIQGEGGIRPAPDEFLKGLRQLCDEN-GLLLIFDEVQCGMGRTGKLFAHEWAGVTP--D----IMAVAKGIG-GGFPLGA 254 (389)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCcceeecccCCCC--C----EEEEehhcc-CCcceEE
Confidence 7899999 789999999999999999 999999999998755443111 1112222 1 468999998 9999999
Q ss_pred EEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHhccCCCC-eecCCCceE
Q 012124 313 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGELEGV-KMSEPQGAF 389 (470)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~g~ 389 (470)
+++++++++.+.......+++.+++.|.++.+.|+.-.. ..++++++.+.++++.+.+.+ +.+++ .... ..|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~-g~G~ 330 (389)
T PRK01278 255 CLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVD---RFPDVIEEVR-GKGL 330 (389)
T ss_pred EEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh---hCCCceeeEe-cccE
Confidence 999999988887666667788999999999877763110 123445555555555554432 23322 2223 3577
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
++|++++. +..+++++|+++ ||.+.|+. .+++||+++ .+++++++++++|+++++++
T Consensus 331 ~~~i~~~~-------------~~~~~~~~l~~~-GV~~~p~~----~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~~ 389 (389)
T PRK01278 331 LLGLKCVV-------------PNRDLVQALRDE-GLLTVGAG----DNVVRLLPPLIITEEEIDEALERLERAAESL 389 (389)
T ss_pred EEEEEEec-------------CHHHHHHHHHHC-CeEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhC
Confidence 78888753 567899998877 99999974 578999965 48999999999999998753
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=249.10 Aligned_cols=330 Identities=19% Similarity=0.204 Sum_probs=236.0
Q ss_pred CeEEccCCC-CCCCChHHHHHHHHHHHHcCCCC---CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~---y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.+++|+.++ ...+.++++.+++++.+.+...+ |....|..++++.+.+.+.+.+|. ++ +++++++++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~-~iv~~sg~~a~~~~ 77 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EA-ALVFSSGYAANDGV 77 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CC-EEEeccHHHHHHHH
Confidence 356777665 34444789999999999753222 222235555555555555555553 23 45555556788878
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----CceEEEEcCCCCCcccCCC
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~i~l~~p~nPtG~~~s 245 (470)
+.+++++||.|++++|.|+++...++..|++++.++. +|++.+++.+++ +++++++++++||||...+
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~ 150 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150 (349)
T ss_pred HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence 8888899999999999999998888999999988763 477788887753 4677778899999999988
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+++|+++|+++ ++++|+|++|+...+..... ......+ ..+.+++++|+||.++.+| ||+++++++++.+.
T Consensus 151 ---~~~i~~~~~~~-~~~livD~a~~~g~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~ 222 (349)
T cd06454 151 ---LPELVDLAKKY-GAILFVDEAHSVGVYGPHGRGVEEFGGL-TDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLR 222 (349)
T ss_pred ---HHHHHHHHHHc-CCEEEEEccccccccCCCCCChhhhccc-cccCcEEEeechhhhcccC---CEEECCHHHHHHHH
Confidence 78899999999 99999999997533321111 1111112 2467899999999998544 99999999888876
Q ss_pred HHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCc
Q 012124 325 KIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 402 (470)
Q Consensus 325 ~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 402 (470)
.....+ ....++..+.++.+.++.- .+ .+..+++++++++.+.+.|.++ |+.+..+.++++.++.+++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~~--- 294 (349)
T cd06454 223 SYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDPA--- 294 (349)
T ss_pred HhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCChH---
Confidence 644322 2245666666777777641 22 4567788899999999999887 777665555665555554221
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~---~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++.+.|.++ ||.+.++.... ..+++|++++. +++++++++++|+++
T Consensus 295 --------~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 295 --------KAVAFSDALLER-GIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred --------HHHHHHHHHHhC-CceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 567888888877 99998863221 14689999985 899999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-30 Score=253.63 Aligned_cols=333 Identities=15% Similarity=0.173 Sum_probs=235.8
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||.+|.+ .+.. ++.+.+++.+++.+.... ......+.++.+++.+.+.+|. +++++++|+++++.
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~g~----~~~~~~~sg~~a~~ 98 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV--SNLYYTEPQEELAEKLVEHSGA----DRVFFCNSGAEANE 98 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccc--ccccCCHHHHHHHHHHHhhCCC----CEEEEeCCcHHHHH
Confidence 5677899999742 2333 588999999888753211 1111235566666666665553 49999999999999
Q ss_pred HHHHHhc---C----CCCeEEEcCCCCCChHHHHHHcCCEEEE----ecCcCCCCCcc--CHHhHhhhccCCceEEEEcC
Q 012124 169 QAVLAVC---S----PGDEVIIPAPFWVSYPEMARIADATPVI----LPTRISENFLL--DPKVLESKLTEKSRLLILCS 235 (470)
Q Consensus 169 ~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~~--d~~~l~~~l~~~~~~i~l~~ 235 (470)
.+++.+. . +||+|++.+|+|+++...+...+..... .++..+..+.. |++.+++.+++++++|+++.
T Consensus 99 ~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p 178 (379)
T TIGR00707 99 AALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEP 178 (379)
T ss_pred HHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEc
Confidence 9888652 2 3799999999999988776665554321 23322211111 89999999988899998876
Q ss_pred CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
++||+|. .++.+++++|.++|+++ +++||+||+|.++.+.+.. .++.... .... +.||||.++ +|+|+||++
T Consensus 179 ~~~~~g~~~~~~~~l~~i~~l~~~~-~~~~i~De~~~~~~~~g~~-~~~~~~~-~~~d---~~t~sK~~~-~G~riG~~~ 251 (379)
T TIGR00707 179 IQGEGGVNPASAEFLKALREICKDK-DALLIFDEVQTGIGRTGKF-FAYEHYG-IEPD---IITLAKGLG-GGVPIGATL 251 (379)
T ss_pred cccCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchh-hhHHhcC-CCCC---EEEEccccc-CCcccEEEE
Confidence 6778886 47999999999999999 9999999999987654421 1211111 1122 237899998 999999999
Q ss_pred cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCCeecCCCceEEE
Q 012124 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFYL 391 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~ 391 (470)
+++++++.+........++.+++.|.++.++|+.- + ..+.++.++++++.+.+.|+++ .++... +..|.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~---~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~~~ 325 (379)
T TIGR00707 252 AKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVI---E--KERLLENVKEKGDYFKERLEELGKNYPNKEV-RGKGLML 325 (379)
T ss_pred EcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---H--hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc-ccCceEE
Confidence 99999998876555556778999999999888631 1 1235556666667676666553 122111 2357778
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
|+++++ +..++.+.|.++ ||.+.|+. .+++|++++. +++++++++++|++++
T Consensus 326 ~~~~~~-------------~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 326 GIELEA-------------PCKDIVKKALEK-GLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred EEEecC-------------cHHHHHHHHHHC-CcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 888864 467888887655 99999853 4789999754 8999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-30 Score=238.20 Aligned_cols=316 Identities=19% Similarity=0.253 Sum_probs=216.1
Q ss_pred CCCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH-HH-HHHHhc------------CCCCeEEEcCCCC
Q 012124 124 FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI-LQ-AVLAVC------------SPGDEVIIPAPFW 188 (470)
Q Consensus 124 ~~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al-~~-~~~~l~------------~~gd~Vlv~~p~y 188 (470)
..+| +...|++++|+-.++.+. ++++||++..+++-.+ .. +..+++ .+.-+.+++.|+|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY 134 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELLG------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY 134 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--
T ss_pred ccCCCCccCChHHHHHHHHHHhC------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc
Confidence 5789 899999999999999984 6889999976665333 22 222221 1123679999999
Q ss_pred CChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 189 VSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 189 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
..+..+.+.+|.+.++||+.+++ +|+|.+++++ ++.+|.|+ ++..+||||+++|.|..++|+++-.+.+|+.|+
T Consensus 135 DRHFai~E~~Giemi~VpM~~dG---PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 135 DRHFAITEHFGIEMIPVPMTEDG---PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp HHHHHHHHHCT-EEEEEEEETTE---E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred hHHHHHHHhhCcEEEecCCCCCC---CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 99999999999999999998655 8999999998 45788887 577799999999999999999984333499999
Q ss_pred Eecccccccc-CCCCcc---cccc---cCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHH
Q 012124 266 SDEIYEHIIY-APATHT---SFAS---LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSIS 338 (470)
Q Consensus 266 ~Dd~~~~~~~-~~~~~~---~~~~---~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 338 (470)
.|++|....+ +..... .+.. -.+..++++.+.|+||.. +||.+++++.++.+-++.+.+.....+.++..+.
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvN 290 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVN 290 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHH
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHhcCceeCccHHH
Confidence 9999997555 222222 2222 234578999999999998 7999999999999999999999888999999999
Q ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHhcc-CC---C-CeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 339 QKAGVAALGLGY-AGGEVVSKMVKAFRERRDFLVKSFGE-LE---G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 339 q~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
|..-..++.+.. -...|+++.++.++-+.+.+.+.|.+ +. | .+|..|.||||++++..+. .+
T Consensus 291 QLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G------------~A 358 (425)
T PF12897_consen 291 QLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG------------TA 358 (425)
T ss_dssp HHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-------------H
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC------------hH
Confidence 999999998722 12578888888888888888888765 43 3 4899999999999999875 67
Q ss_pred HHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
..+++ |+++.||.++| |..|- .+..|||+.+. +.++++.+++.+..+++
T Consensus 359 krvV~-lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 359 KRVVE-LAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVK 414 (425)
T ss_dssp HHHHH-HHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 77776 56677999999 66662 14689999998 88999999999988765
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=225.89 Aligned_cols=331 Identities=23% Similarity=0.296 Sum_probs=251.1
Q ss_pred hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 91 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
+-|+.++.+..++....++|+-.+ --..|+. .-..+++.++++- -+..+|+|++.-|+.+.|+++
T Consensus 38 a~G~~iv~ld~~e~~ryPdP~q~e--------fk~~~~d-~rnk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~i 102 (375)
T KOG0633|consen 38 ALGRDIVKLDANENPRYPDPEQME--------FKYVYPD-PRNKRLSDALAQD------KPLTSDNICVGVGSDELIDLI 102 (375)
T ss_pred hcCCCceEeccccCCCCcCHHHcc--------cccccCC-cccchhhhhcccC------CCCCccceEEecCcHHHHHHH
Confidence 356778888887766555443211 1233422 2334566655542 347889999999999999999
Q ss_pred HHHhcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcCCCCCcccCCCHH
Q 012124 171 VLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 171 ~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
+++.+.|| ++|++..|+|..|.--+...+++++.+|.++ +|.++.|.+.+.+. +.+|++|+++|+||||..+..+
T Consensus 103 iR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~ 180 (375)
T KOG0633|consen 103 IRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKED 180 (375)
T ss_pred HhheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHH
Confidence 99999999 9999999999999888888999999999975 57799999999884 4799999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
++.+|++.-. |.+|++||+|-+|.-.+.. ..+...+.+.+++.+|||+||++|+|+||-.++.++++.+.+.+
T Consensus 181 di~KiLe~p~---nglVVvDEAYidFsg~~S~----~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~K 253 (375)
T KOG0633|consen 181 DILKILEMPD---NGLVVVDEAYIDFSGVESR----MKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAK 253 (375)
T ss_pred HHHHHHhCCC---CcEEEEeeeeEeecccccc----chHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhcc
Confidence 9999987432 6788899999997643322 22333468899999999999999999999999999999999998
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCC
Q 012124 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 406 (470)
.+++ .|..+..++.+++.+.. -..++..++.+-+.|.++.+.|.+++++. +..+....|+.+++.+.-
T Consensus 254 aPYN--iS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~------- 322 (375)
T KOG0633|consen 254 APYN--ISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGD------- 322 (375)
T ss_pred CCcc--ccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCC-------
Confidence 8766 67777788888887432 35677888888888999999999987764 444455566888886531
Q ss_pred CCCCCHHHHHHHHHHcCCEEEEC-CCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 407 GKIENSESLCRYLLDKAQVALVP-GDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~p-g~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
..-+..+..+++.+.||.|+- |+.-+..|++|++++..++. .-.++.|++
T Consensus 323 --n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~ 373 (375)
T KOG0633|consen 323 --NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQ 373 (375)
T ss_pred --cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHh
Confidence 012455666677788998863 55555689999999985432 333444443
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=255.64 Aligned_cols=331 Identities=14% Similarity=0.099 Sum_probs=239.4
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.++||.+|.+ .+.. ++.+.+++.+++.+. ...|.++. ...+++++.+..|. ..++++++++|+++
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~-----~~~la~~l~~~~~~-~~~~~v~~~~sgse 114 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEP-----QIALAERLVELLGA-PEGGRVFFCNSGAE 114 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHH-----HHHHHHHHHHhCCC-CCCCEEEEeCchHH
Confidence 5778999998753 3444 689999999988752 13353322 24555566555553 24579999999999
Q ss_pred HHHHHHHHhcCCC-CeEEEcCCCCCChHHHHHH-cCC------------EEEEecCcCCCCCccCHHhHhhhccCCceEE
Q 012124 166 SILQAVLAVCSPG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISENFLLDPKVLESKLTEKSRLL 231 (470)
Q Consensus 166 al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i 231 (470)
++..+++.+..+| +.|+..+++|+++...... .|. ++..+|. .|++.+++.+++++++|
T Consensus 115 a~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~~~av 187 (398)
T PRK03244 115 ANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDDTAAV 187 (398)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCCeEEE
Confidence 9999999776676 5677777899988644332 222 2222222 37899999987788999
Q ss_pred EEcCCCCCcccCCCHHH-HHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcccccccce
Q 012124 232 ILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 232 ~l~~p~nPtG~~~s~~~-~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
++..++||||..++.++ +++|.++|++| |+++|+||+|.+|.+.+... .....+.+ + +.+|||.++ +|+|
T Consensus 188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~~~~~~~~~p--D----i~t~sK~l~-~G~~ 259 (398)
T PRK03244 188 FLEPIQGEAGVVPPPAGYLAAAREITDRH-GALLVLDEVQTGIGRTGAWFAHQHDGVTP--D----VVTLAKGLG-GGLP 259 (398)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCcccchHHhhhhhCCCC--C----EEEEchhhh-CCcc
Confidence 99888999999987655 99999999999 99999999998865544211 01112222 2 448899998 9999
Q ss_pred eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee--cCCCc
Q 012124 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM--SEPQG 387 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~~ 387 (470)
+||+++++++++.+.......+++.+++.|.++.++|+.- . ..+..++++++.+.+.+.|+++ +..+ .....
T Consensus 260 ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~ 333 (398)
T PRK03244 260 IGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTI---A--SEGLLENAERLGEQLRAGIEAL-GHPLVDHVRGR 333 (398)
T ss_pred cEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHHHHHHHhc-CCCceeeEeec
Confidence 9999999999888766555567789999999999998631 1 1234455666677788888775 3211 11236
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
|+++|+.++.. ....+.++|.++ ||.+.+.. .+.+|++++. +++++++++++|++++++++
T Consensus 334 g~~~~i~~~~~------------~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 334 GLLLGIVLTAP------------VAKAVEAAAREA-GFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred cEEEEEEEecc------------HHHHHHHHHHHC-CeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 78899998642 456788888765 99998742 4789999775 89999999999999998765
Q ss_pred C
Q 012124 466 P 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 397 ~ 397 (398)
T PRK03244 397 A 397 (398)
T ss_pred c
Confidence 4
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=250.46 Aligned_cols=334 Identities=19% Similarity=0.236 Sum_probs=243.6
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCC-----CCC----CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR-----YTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~-----y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
|++++.|..+... ++|+.+.+++.+.+...... +.. .....++|+.+++++ |.+ ++++|++|+|+
T Consensus 16 ~~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----~~~-~~~~v~~~~g~ 89 (403)
T TIGR01979 16 GKPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFI----NAA-SDEEIVFTRGT 89 (403)
T ss_pred CCceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCCH
Confidence 4567888888877 45777888888776542111 100 123457778888776 432 36799999999
Q ss_pred HHHHHHHHHHh----cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcC
Q 012124 164 KQSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 235 (470)
Q Consensus 164 ~~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~ 235 (470)
++++.+++.++ +++||+|++.++.|++.. ...+..|++++.++.+. ++.+|++.+++.++++++++++++
T Consensus 90 t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~lv~~~~ 167 (403)
T TIGR01979 90 TESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD--DGTLDLDDLEKLLTEKTKLVAITH 167 (403)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCC--CCCCCHHHHHHHhccCCeEEEEEc
Confidence 99999988875 578999999999887643 45567899999999873 345899999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
++||||..++ +++|.++|+++ |+++|+|++|+... ....+.. .+..+++.|++|.+|.+| +||+++
T Consensus 168 ~~~~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~g~----~~~~~~~----~~~d~~~~s~~K~~gp~G--~g~l~~ 233 (403)
T TIGR01979 168 VSNVLGTVNP---VEEIAKLAHQV-GAKVLVDGAQAVPH----MPVDVQA----LDCDFYVFSGHKMYGPTG--IGVLYG 233 (403)
T ss_pred ccccccccCC---HHHHHHHHHHc-CCEEEEEchhhcCc----cccCccc----cCCCEEEEecccccCCCC--ceEEEE
Confidence 9999999999 78899999999 99999999997521 1122221 245699999999888555 899999
Q ss_pred CHHHHHHHHHHh---------------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 316 PKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 316 ~~~~~~~l~~~~---------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
++++++.+.... ......++.....++.++++.- .+...++++++..+.++.+.+.|
T Consensus 234 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~--~~~g~~~~~~~~~~l~~~l~~~l 311 (403)
T TIGR01979 234 KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL--EAIGLENIEAHEHELTAYALERL 311 (403)
T ss_pred chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHH
Confidence 988777653110 0111234455555556655431 01125677788888899999999
Q ss_pred ccCCCCeecCCC-----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC--------CCCCCcEEE
Q 012124 375 GELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA--------FGDDTCIRI 441 (470)
Q Consensus 375 ~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~--------f~~~~~iRl 441 (470)
++++|+++..|. +++ +.+.+++. +..++.+.|. +.||.+.+|.. ++.++++|+
T Consensus 312 ~~~~g~~~~~~~~~~~~~~~-v~~~~~~~------------~~~~~~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~iRi 377 (403)
T TIGR01979 312 GEIPGLRIYGPRDAEDRGGI-ISFNVEGV------------HPHDVGTILD-EEGIAVRSGHHCAQPLMRRFGVPATCRA 377 (403)
T ss_pred hcCCCEEEeCCCCccccCce-EEEEeCCc------------CHHHHHHHHh-hCCEEEcchhhhhHHHHHHhCCCCEEEE
Confidence 888888887554 455 44566643 5667777665 55999998763 344679999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHHhh
Q 012124 442 SYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 442 s~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
|++. +++|++.+++.|+++++.+
T Consensus 378 S~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 378 SFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred EeccCCCHHHHHHHHHHHHHHHHHh
Confidence 9986 8899999999999887754
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=251.92 Aligned_cols=335 Identities=19% Similarity=0.230 Sum_probs=243.0
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCC------CCC---CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR------YTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~------y~~---~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
++++.|..+... ++|+.+++++.+.+.+.... |.. .....++|+.+++++ |.. ++++|++|+|++
T Consensus 31 ~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~-~~~~v~~t~g~t 104 (424)
T PLN02855 31 SKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFI----NAS-TSREIVFTRNAT 104 (424)
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCEEEEeCCHH
Confidence 457888888876 46788889988877542111 100 112357777777775 431 357999999999
Q ss_pred HHHHHHHHHh----cCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 165 QSILQAVLAV----CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 165 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+++..+++.+ +++||+|++.++.|++. ...++..|++++.++++.++ .+|++.+++.+++++++|+++++
T Consensus 105 ~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~--~~~~~~l~~~i~~~t~lv~i~~~ 182 (424)
T PLN02855 105 EAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDE--VLDVEQLKELLSEKTKLVATHHV 182 (424)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCC--CcCHHHHHHHhccCceEEEEeCc
Confidence 9999998763 58999999999988753 34556789999999986543 48999999999889999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||..+| +++|+++|+++ |++||+|++|+. +.....+.. .+..+++.|++|.+|.+| +||++++
T Consensus 183 ~n~tG~~~~---~~~I~~l~~~~-g~~vivD~a~~~----g~~~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~ 248 (424)
T PLN02855 183 SNVLGSILP---VEDIVHWAHAV-GAKVLVDACQSV----PHMPVDVQT----LGADFLVASSHKMCGPTG--IGFLWGK 248 (424)
T ss_pred cccccccCC---HHHHHHHHHHc-CCEEEEEhhhhc----CCcCCCchh----cCCCEEEeecccccCCCc--cEEEEEc
Confidence 999999999 77889999999 999999999963 221222222 234588999999877444 8999999
Q ss_pred HHHHHHHHHHh--------------------hhccCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 317 KHFVAACNKIQ--------------------SQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 317 ~~~~~~l~~~~--------------------~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+++++.+.... ..+..+ ++.....++.++++.- .+...++++++.++.++.+.+.|+
T Consensus 249 ~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~L~ 326 (424)
T PLN02855 249 SDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYL--SEIGMDRIHEYEVELGTYLYEKLS 326 (424)
T ss_pred hhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHh
Confidence 88877653220 001122 3333344444455421 123467788888889999999998
Q ss_pred cCCCCeecCCC-------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEE
Q 012124 376 ELEGVKMSEPQ-------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIR 440 (470)
Q Consensus 376 ~~~g~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iR 440 (470)
+++|+++..+. +++ +.+.+++. +..++.+.|.+++||.+..|..+ +.++++|
T Consensus 327 ~~~g~~i~~~~~~~~~~r~~~-v~~~~~~~------------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iR 393 (424)
T PLN02855 327 SVPGVRIYGPKPSEGVGRAAL-CAFNVEGI------------HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASAR 393 (424)
T ss_pred cCCCEEEeCCCcccccCcccE-EEEEECCc------------CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEE
Confidence 88888877432 244 55677643 56788888876669999988743 2346899
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 441 ISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 441 ls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|++. +++|++.+++.|+++++.++
T Consensus 394 iS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 394 ASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99986 89999999999999987653
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=248.36 Aligned_cols=297 Identities=13% Similarity=0.156 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 213 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 213 (470)
.++++.+++++ |. +.+++++|+++++..++.+++++||.|+++.+.|.+....++..|++++.++.+.++++
T Consensus 54 ~~~~e~lA~~~----g~----~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~ 125 (370)
T TIGR02539 54 HDFLEDLAEFL----GM----DEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEY 125 (370)
T ss_pred HHHHHHHHHHh----CC----CceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccC
Confidence 45666666664 43 46778999999999999999999999999999977777778999999999998755567
Q ss_pred ccCHHhHhhhccC-------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 214 LLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 214 ~~d~~~l~~~l~~-------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.+|++.|++.+++ ++++|++++|+||||...+ +++|+++|+++ |+++|+|++|+.... ......
T Consensus 126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~-~~~livDea~~~g~~----~~~~~~- 196 (370)
T TIGR02539 126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREK-GVPLLLNCAYTVGRM----PVSAKE- 196 (370)
T ss_pred CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHc-CCeEEEECccccCCc----CCCHHH-
Confidence 8999999999852 6789999999999999888 88889999999 999999999986321 111111
Q ss_pred CCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC--------CChHHHHHHHHHHhcCCCChHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG--------ASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~--------~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
.+..++++||||.++ +|.|+||+++++++++.+......+... .....+.++..++.. ..+++++
T Consensus 197 ---~~~di~v~s~sK~~~-~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~ 269 (370)
T TIGR02539 197 ---IGADFIVGSGHKSMA-ASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKR 269 (370)
T ss_pred ---cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHH
Confidence 234578899999998 6778999999999999988766543321 111244444555542 1345555
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeec--CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEE-EECCCCCCC
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA-LVPGDAFGD 435 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~-v~pg~~f~~ 435 (470)
..+.++. ++++.+.|+++ |+++. .+....|+++++|.... ... +...+...+.+.|.++ ||. +.+ +.
T Consensus 270 ~~~~~~~-~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~-~~~--~~~~~~~~~~~~L~e~-GI~~ir~----~~ 339 (370)
T TIGR02539 270 WDEEVKK-TRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHE-IAQ--KHKRRGYFLYEELKKR-GIHGIRS----GQ 339 (370)
T ss_pred HHHHHHH-HHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhH-Hhh--hhccccHHHHHHHHhC-CCccccC----Cc
Confidence 5555555 45899999988 77753 34456667788763100 000 0001345678888766 896 554 33
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 436 DTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 436 ~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
++++|+++.. ++++++++++.|+++++++
T Consensus 340 ~~~iRis~~~~t~e~i~~l~~~L~~~~~~~ 369 (370)
T TIGR02539 340 TKYFKLSVYGLTKEQVEYVVDSFEEIVEEY 369 (370)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 5699999744 9999999999999988753
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=247.80 Aligned_cols=330 Identities=15% Similarity=0.164 Sum_probs=239.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCC-C-CC-------cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY-T-PN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y-~-~~-------~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+++.|..+.-. ++|+.+++++.+.+....... . .. .-..++|+.+++++ |. .++++|++|+|+++
T Consensus 23 ~~iYld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~-~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NA-RSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCcccc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----Cc-CCCCeEEEeCCHHH
Confidence 45777766644 356778888888776422111 0 10 11346667777665 42 15689999999999
Q ss_pred HHHHHHHH----hcCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 166 SILQAVLA----VCSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 166 al~~~~~~----l~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
++..++.+ ++++||+|++.++.|++. ...++..|++++.++++.+ +.+|++.|+++++++++++++++++
T Consensus 97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~--~~~d~~~l~~~i~~~t~lv~l~~~~ 174 (406)
T PRK09295 97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPALFDERTRLLAITHVS 174 (406)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC--CCCCHHHHHHhcCCCcEEEEEecch
Confidence 99999886 468999999999988753 4455678999999998643 4589999999999899999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||..+| +++|+++|+++ |+++|+|++|+... ...++.. .+..+++.|++|.+|.+| +||+++++
T Consensus 175 n~tG~~~~---~~~i~~~~~~~-~~~vivD~a~~~g~----~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~ 240 (406)
T PRK09295 175 NVLGTENP---LAEMIALAHQH-GAKVLVDGAQAVMH----HPVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVKE 240 (406)
T ss_pred hcccccCC---HHHHHHHHHHc-CCEEEEEcccccCc----cccCchh----cCCCEEEeehhhccCCCC--cEEEEEch
Confidence 99999999 78899999999 99999999997532 1222222 244589999999888555 89999998
Q ss_pred HHHHHHHHH----------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 318 HFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 318 ~~~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
++++.+... .+....+++.....++.++++.- .+...++++++.++.++++.+.|.
T Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~l~ 318 (406)
T PRK09295 241 ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYV--SALGLNNIAEYEQNLMHYALSQLE 318 (406)
T ss_pred HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHh
Confidence 887654311 11122245666666667776541 022356777888888999999998
Q ss_pred cCCCCeecCCC--ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------CCCcEEEEeec
Q 012124 376 ELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------DDTCIRISYAA 445 (470)
Q Consensus 376 ~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------~~~~iRls~~~ 445 (470)
+++|+++..+. .++ +.+.+++. +..++.+.| +++||.+..|..+. .++++|+|++.
T Consensus 319 ~~~~~~~~~~~~~~~i-v~~~~~~~------------~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ 384 (406)
T PRK09295 319 SVPDLTLYGPQNRLGV-IAFNLGKH------------HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAM 384 (406)
T ss_pred cCCCEEEeCCCCCceE-EEEEECCc------------CHHHHHHHH-HhCCeEEeccccchHHHHHHHCCCCEEEEEccC
Confidence 88888876653 455 44456543 567777766 55699999987442 34689999997
Q ss_pred --CHHHHHHHHHHHHHHHH
Q 012124 446 --SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 446 --~~~~i~~~l~~l~~~l~ 462 (470)
+++|++.+++.|+++.+
T Consensus 385 ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 385 YNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 88999999999988754
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=244.83 Aligned_cols=320 Identities=17% Similarity=0.186 Sum_probs=232.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
.|+.+.+++.+... ...| + +..++.+.+.+.+.+.+|.+ .++.+++++|+++++..++.+++++||+|++.+++
T Consensus 10 ~~~~v~~a~~~~~~--~~~~-~--~~~~~~~~~~~~la~~~g~~-~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~ 83 (356)
T cd06451 10 VPPRVLKAMNRPML--GHRS-P--EFLALMDEILEGLRYVFQTE-NGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNG 83 (356)
T ss_pred CCHHHHHHhCCCcc--CCCC-H--HHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCC
Confidence 46777777754321 1122 2 34455556666666666752 33457888989999999999999999999999988
Q ss_pred CCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEE
Q 012124 188 WVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264 (470)
Q Consensus 188 y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~i 264 (470)
|++ +...++..|++++.++.+++ +.+|++.+++.+++ ++++|++++++||||..++ +++|.++|+++ |++|
T Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~-~~~l 157 (356)
T cd06451 84 VFGDRWADMAERYGADVDVVEKPWG--EAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH-DALL 157 (356)
T ss_pred chhHHHHHHHHHhCCCeEEeecCCC--CCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc-CCEE
Confidence 776 45677889999999998643 46899999999987 8999999999999999999 77788999999 9999
Q ss_pred EEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH---Hhh-------------
Q 012124 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQS------------- 328 (470)
Q Consensus 265 I~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~---~~~------------- 328 (470)
|+|++|+. +....++.. .+..+++.|.+|.++ .+.++||++.++++++.+.. ...
T Consensus 158 i~D~~~~~----g~~~~~~~~----~~~d~~~~s~~K~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (356)
T cd06451 158 IVDAVSSL----GGEPFRMDE----WGVDVAYTGSQKALG-APPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWG 228 (356)
T ss_pred EEeeehhc----cCccccccc----cCccEEEecCchhcc-CCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhc
Confidence 99998863 111122222 233466788999997 44568999999998877653 000
Q ss_pred ---hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCccCCc
Q 012124 329 ---QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSE 402 (470)
Q Consensus 329 ---~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~~ 402 (470)
....+++...+.++.++++.- ....++++.++++++++++.+.|.++ |+++..+. .+.++|+.++...
T Consensus 229 ~~~~~~~t~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--- 302 (356)
T cd06451 229 EGYSYPHTPPVNLLYALREALDLI--LEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGV--- 302 (356)
T ss_pred ccCCCCCCChHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCC---
Confidence 112223444445555555431 13346677888888999999999887 77665332 4555677776432
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|.+++||.+.+|..+..+++||++++. ++++++++++.|+++++
T Consensus 303 --------~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 303 --------DGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred --------CHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 67889998877669999998765556799999985 89999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=244.22 Aligned_cols=333 Identities=19% Similarity=0.197 Sum_probs=234.7
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcC---C---CCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---F---TRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~---~---~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|..+++|+.++ .++...+.+++++.+++.+. . ..| .......+|++.+++++ |. +.+++++|+
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g~----~~~~~~~sG 123 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----GF----ESCLLCQSG 123 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----CC----CcEEEECCH
Confidence 455678887765 56667889999999988641 1 111 11123456666666664 42 467889999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCccc
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 242 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~ 242 (470)
++|+..+++++..+||.|+++.+.|......++..|++++.++. .|++.|++++++ ++++|++++++||||.
T Consensus 124 ~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~tG~ 196 (407)
T PRK07179 124 WAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYSTTGT 196 (407)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCc
Confidence 99999999999999999999999998888888889998876653 489999999865 5788888999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
++| +++|.++|+++ |+++|+||+|+...++..+...+..++-.....+++.|+||.+| + |+||+++++++++.
T Consensus 197 i~p---l~~I~~l~~~~-~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~--~~G~l~~~~~~~~~ 269 (407)
T PRK07179 197 IAP---LADIVDIAEEF-GCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-G--RAGIITCPRELAEY 269 (407)
T ss_pred ccc---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-c--cCeEEEeCHHHHHH
Confidence 999 78899999999 99999999998644432222222223211123588999999996 3 68999999998887
Q ss_pred HHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+...... ...+.++....++.++++. .......+++++++++++.+.|+++ |+++. +. +.++++.++...
T Consensus 270 ~~~~~~~~~~~~t~~~~~~aa~~aal~~----~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~-~~i~~l~~~~~~- 341 (407)
T PRK07179 270 VPFVSYPAIFSSTLLPHEIAGLEATLEV----IESADDRRARLHANARFLREGLSEL-GYNIR-SE-SQIIALETGSER- 341 (407)
T ss_pred HHHhCcCeeeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CC-CCEEEEEeCCHH-
Confidence 7654432 2222233333333344543 2223456788899999999999888 77765 33 345677765321
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC---CCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f---~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+...+.+.|.++ ||.+..-... ...+++||+++. ++++++++++.|++++++..
T Consensus 342 ----------~~~~~~~~L~~~-GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 342 ----------NTEVLRDALEER-NVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred ----------HHHHHHHHHHHC-CceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence 345666666655 8874311000 124689999986 99999999999999988653
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=243.09 Aligned_cols=321 Identities=17% Similarity=0.144 Sum_probs=227.3
Q ss_pred EccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC
Q 012124 98 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP 177 (470)
Q Consensus 98 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~ 177 (470)
||++.+|. .+++.+++++.+.... ...|++.....++++.+++++ | ++++++++|+++++..++.+++++
T Consensus 1 ~~~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~~a~~~----g----~~~~~~~~~gt~a~~~~~~~l~~~ 70 (338)
T cd06502 1 DFRSDTVT-GPTPEMLEAMAAANVG-DDVYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHTQP 70 (338)
T ss_pred CcccccCC-CCCHHHHHHHHhcccC-CcccCCCHHHHHHHHHHHHHh----C----CCeEEEecCchHHHHHHHHHhcCC
Confidence 35555554 4678888888876533 235666666777777777765 4 457888888889999999999999
Q ss_pred CCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-------CceEEEEcCCCCCcccCCCHH
Q 012124 178 GDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 178 gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~i~l~~p~nPtG~~~s~~ 247 (470)
||+|++++|+|..+.. .....|++++.++.+ + +.+|++.+++++++ ++++|++++|+|| |..++.+
T Consensus 71 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~ 146 (338)
T cd06502 71 GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLD 146 (338)
T ss_pred CCeEEEecCcceeeecCCcHHHHcCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHH
Confidence 9999999999876543 345689999999874 2 45999999999864 6889999999997 6677999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
++++|+++|+++ |+++|+|++|..+....... ++..+.. +..+++.|+||.++++| .+++++++++++.+....
T Consensus 147 ~l~~i~~~~~~~-~~~livDea~~~~~~~~~~~-~~~~~~~--~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~ 220 (338)
T cd06502 147 ELKAISALAKEN-GLPLHLDGARLANAAAALGV-ALKTYKS--GVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRR 220 (338)
T ss_pred HHHHHHHHHHHc-CCeEeechHHHHHHHHhcCC-CHHHHHh--cCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHH
Confidence 999999999999 99999999986432211111 2222221 22356889999998777 234568999999888765
Q ss_pred hhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 328 SQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 328 ~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
..+ ....+.+.+.++...|+. ..+. +..+++.++++++.+.|+++ |+.+.++.+++ +.++++..-
T Consensus 221 ~~~~~~~~~~~~~~~a~~~~L~~----~~~~-~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~v~~~~~~------ 287 (338)
T cd06502 221 KQAGGGMRQSGFLAAAGLAALEN----DLWL-RRLRHDHEMARRLAEALEEL-GGLESEVQTNI-VLLDPVEAN------ 287 (338)
T ss_pred HHhCCChhhHHHHHHHHHHHhcC----chHH-HHHHHHHHHHHHHHHHHHhc-CCCcccccCCe-EEEecCCcc------
Confidence 433 334566777777777764 2233 44466777788999999887 55665666666 444554210
Q ss_pred CCCCCCHHHHHHHHHH--cCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 406 FGKIENSESLCRYLLD--KAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~--~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
.....+.+.+.+ +.||.+.+.. .+++|++++. ++++++++++++++
T Consensus 288 ----~~~~~l~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 288 ----AVFVELSKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ----HHHHHHHHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 012233333331 3589887742 2789999985 88999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=246.11 Aligned_cols=338 Identities=16% Similarity=0.120 Sum_probs=241.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-------CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-------~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+..++|..+.... ++.+++++.+.+.. +...|....+..++++.+++++.+.+|.+ ..+|++++ ++++
T Consensus 19 ~~~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a 93 (402)
T cd00378 19 RETLELIASENFT--SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQA 93 (402)
T ss_pred HhCeeeeccCCcC--CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHH
Confidence 3457787666543 67888888766532 12335556677888888888888778853 44566665 5689
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHH-----HHHcCCEEEEecCcCC-CCCccCHHhHhhhcc-CCceEEEEcCCCCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNP 239 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~-~~~~~i~l~~p~nP 239 (470)
+..++.++++|||+|++++|+|+++... ++..|.+++.++++.+ +++.+|++.+++.+. ++++++++++++||
T Consensus 94 ~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~ 173 (402)
T cd00378 94 NLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP 173 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC
Confidence 9999999999999999999999876543 6678888877777644 257799999999984 68999988888886
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccc-cccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK- 317 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~- 317 (470)
+ ..+ +++|+++|+++ |++||+|++| .++.+.+....++. . ..++++|+||.+ +|+|.||+++++
T Consensus 174 ~--~~~---~~~I~~l~~~~-~~~li~D~a~~~g~~~~g~~~~~~~---~---~dv~~~s~sK~l--~G~~gg~i~~~~~ 239 (402)
T cd00378 174 R--PID---FKRFREIADEV-GAYLLVDMAHVAGLVAGGVFPNPLP---G---ADVVTTTTHKTL--RGPRGGLILTRKG 239 (402)
T ss_pred C--CcC---HHHHHHHHHhc-CCEEEEEccchhhhhhcccCCCccc---C---CcEEEeccccCC--CCCCceEEEeccH
Confidence 4 445 88999999999 9999999995 44444432222222 1 127899999987 788999999987
Q ss_pred HHHHHHHHHhhhccCCCChHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeec
Q 012124 318 HFVAACNKIQSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 395 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~ 395 (470)
++++.+.........+.+.+.+. ++..++... ...+.++.+++++++++.+.+.|+++ |+.+. .+.+++++|+++
T Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~ 316 (402)
T cd00378 240 ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEA--LEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDL 316 (402)
T ss_pred HHHHHHHHHhCccccCCchHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeC
Confidence 89888877655444444433333 323333321 12256677788999999999999987 88765 456789999999
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC----C--CCCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA----F--GDDTCIRISYAA------SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~----f--~~~~~iRls~~~------~~~~i~~~l~~l~~~l~~ 463 (470)
++.. .+...+.+. ++++||.+.++.. + ..++++|++++. ++++++.+++.|++++++
T Consensus 317 ~~~~----------~~~~~~~~~-l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 317 RPKG----------ITGKAAEDA-LEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred CccC----------CCHHHHHHH-HHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 7421 034555554 4566999976432 2 124689999865 489999999999998765
Q ss_pred h
Q 012124 464 L 464 (470)
Q Consensus 464 ~ 464 (470)
-
T Consensus 386 ~ 386 (402)
T cd00378 386 A 386 (402)
T ss_pred c
Confidence 3
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=242.84 Aligned_cols=334 Identities=17% Similarity=0.171 Sum_probs=234.0
Q ss_pred CCCeEEccCCC-CCCCChHHHHHHHHHHHHcCCCC-------CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR-------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~-------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
++++++|++++ ..+..++.+++++.+++.+.... |+...-..+|++.++++ .|. + ..+++++++
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~----~g~---~-~~l~~~sG~ 115 (402)
T TIGR01821 44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADL----HGK---E-SALVFTSGY 115 (402)
T ss_pred CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHH----hCC---C-eEEEECchH
Confidence 35678888886 66777899999999998763221 11222234555555555 442 2 345555557
Q ss_pred HHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCC
Q 012124 165 QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 238 (470)
Q Consensus 165 ~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~n 238 (470)
+++..++..+.. +++.|+.+...|......+...|+++..++. .|++.+++.++ +++++|++++|+|
T Consensus 116 ~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~~~~ 188 (402)
T TIGR01821 116 VANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFESVYS 188 (402)
T ss_pred HHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcCCCC
Confidence 788878887764 6777777666666666677788888766653 26666666664 2578899999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+.+ +++|.++|++| ++++|+||+|+...++...........-..+.+++++||||.+|++| ||++++++
T Consensus 189 ~~G~~~~---l~~i~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~~ 261 (402)
T TIGR01821 189 MDGDIAP---IEEICDLADKY-GALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASRK 261 (402)
T ss_pred CCCCccC---HHHHHHHHHHc-CCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCHH
Confidence 9999999 88899999999 99999999998544432221111111111234688899999998778 99999999
Q ss_pred HHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 319 FVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
+++.+...... ++.+.++..+.++.++|+.- ++. ...++.++++++++.+.|+++ |+++..+.+++ +++.++
T Consensus 262 ~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-~~i~~~ 335 (402)
T TIGR01821 262 LIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQENVKRLKNLLEAL-GIPVIPNPSHI-VPVIIG 335 (402)
T ss_pred HHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeC
Confidence 99988765433 24456777888888888742 222 445566678888999999887 78777666665 455554
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
... ...++.+.|++++||.+.+...... .+++|++++. ++++++++++.|+++++++.
T Consensus 336 ~~~-----------~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 398 (402)
T TIGR01821 336 DAA-----------LCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLG 398 (402)
T ss_pred CHH-----------HHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 310 3567888887777999988543332 3589999975 99999999999999988753
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=247.28 Aligned_cols=356 Identities=12% Similarity=0.096 Sum_probs=243.2
Q ss_pred hcCCCeEEccCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 91 QAGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.+|+.++|+..|...... ++.+.+++.+++.+..+.+.+..+.+ ....+++++....+.+.. +++++++++++++
T Consensus 38 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~~~~~-~~~~f~~sGsea~ 115 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE-PYLELCEKMNQKVPGDFA-KKTLLVTTGSEAV 115 (425)
T ss_pred CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCH-HHHHHHHHHHHhCCCCCC-CEEEEeCCcHHHH
Confidence 367788999988655444 78999999999876433332222333 445888888876664333 3555555555766
Q ss_pred HHHHHHh---cCCCCeEEEcCCCCCChHHHHHHcCCEEE----------------EecCcCCCCCcc--CHHhHhhhcc-
Q 012124 168 LQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADATPV----------------ILPTRISENFLL--DPKVLESKLT- 225 (470)
Q Consensus 168 ~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~----------------~v~~~~~~~~~~--d~~~l~~~l~- 225 (470)
+.+++.. .++ ..|+..+++|++....+...+.... ++|.+. .+... +++.|++.++
T Consensus 116 e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~ 193 (425)
T PRK08088 116 ENAVKIARAATKR-SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSEDDAIASIERIFKN 193 (425)
T ss_pred HHHHHHHHHHhCC-CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHh
Confidence 6555543 334 4556669999998866655443211 122211 11101 1456777774
Q ss_pred ----CCceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 226 ----EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 226 ----~~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
++..++++ +..++++...++.+++++|.++|++| |++||+||+|.++.+.+. +..+.. .+.+..+.|||
T Consensus 194 ~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~-~~~lI~Dev~~g~g~~g~----~~~~~~-~~~~pdi~s~s 267 (425)
T PRK08088 194 DAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEH-GIMLIADEVQTGAGRTGT----LFAMEQ-MGVAADLTTFA 267 (425)
T ss_pred ccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcc----hhHHhh-cCCCCCEEEEe
Confidence 34566666 44478888899999999999999999 999999999998655432 111111 23345589999
Q ss_pred cccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
|.++ +|+|+||+++++++++.+.......+++.+++.|.++.++|+.+.. +++++++++..+.+++.+.+.+.+.|.+
T Consensus 268 K~l~-~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 345 (425)
T PRK08088 268 KSIA-GGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEI 345 (425)
T ss_pred cccc-CCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9998 9999999999999999987777777888999999999999997654 6778888877776777666665556543
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
...... |+++|+.+.+....... .......+.+.+.++ ||.+.|+..| .+.+||+++. ++++|++++++|+
T Consensus 346 ~~v~g~-G~~~~l~l~~~~~~~~p---~~~~~~~l~~~~~~~-Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~~l~ 418 (425)
T PRK08088 346 GDVRGL-GAMIAIELFEDGDHSKP---NAKLTAQIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIIA 418 (425)
T ss_pred EEEecc-ceEEEEEEecCCCCCCC---CHHHHHHHHHHHHhC-CCEEecCCCC--CCEEEEECCCCcCHHHHHHHHHHHH
Confidence 222222 88899998432100000 001356788877765 8988886554 4789999994 8999999999999
Q ss_pred HHHHhhC
Q 012124 459 KGLLTLR 465 (470)
Q Consensus 459 ~~l~~~~ 465 (470)
+++++++
T Consensus 419 ~~l~~~~ 425 (425)
T PRK08088 419 QCFDEAK 425 (425)
T ss_pred HHHHhhC
Confidence 9998654
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=242.10 Aligned_cols=333 Identities=19% Similarity=0.201 Sum_probs=234.4
Q ss_pred CCCeEEccCCC-CCCCChHHHHHHHHHHHHcCCC-------CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFT-------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~-------~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
++++++|++++ ..+..++.+++++.+++.+... .|++..-..+|++.++++ .| .++.+++++|.
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~----~g---~~~~~~~~sG~- 116 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADL----HG---KEAALVFTSGY- 116 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHH----hC---CCcEEEECcHH-
Confidence 46789998886 5677788999999998875322 122333345555555555 44 24556666664
Q ss_pred HHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCC
Q 012124 165 QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 238 (470)
Q Consensus 165 ~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~n 238 (470)
++...++..+.. +++.|+.....|.+....++..|+++..++. .|++.+++.++ +++++|++++++|
T Consensus 117 ~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~v~s 189 (407)
T PRK09064 117 VSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFESVYS 189 (407)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeCCCC
Confidence 565656666543 7777777766666666677778888766653 36777777664 4678999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|+|...+ +++|.++|++| |++||+||+|+...|+.... .+....+. .+.+|+++||||.+|++| ||+++++
T Consensus 190 ~~G~~~~---l~~i~~l~~~~-~~~livDEa~~~G~~g~~g~-g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~ 261 (407)
T PRK09064 190 MDGDIAP---IAEICDLADKY-NALTYLDEVHAVGMYGPRGG-GIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSA 261 (407)
T ss_pred CCccccC---HHHHHHHHHHc-CCEEEEECCCcccccCCCCC-ChHHhcCCCCCCeEEEEecchhhhccC---ceEecCH
Confidence 9999999 88899999999 99999999998444432221 22222111 234788999999998777 9999999
Q ss_pred HHHHHHHHHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec
Q 012124 318 HFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 318 ~~~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~ 395 (470)
++++.+......+ +.+.++..+.++.+.++.- ++ ....+++++++++++.+.|+++ |+++..+.+++ +++.+
T Consensus 262 ~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~---~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-v~i~~ 335 (407)
T PRK09064 262 ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL---KE-SNEERERHQERAAKLKAALDAA-GIPVMPNESHI-VPVMV 335 (407)
T ss_pred HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEe
Confidence 9999887654432 3456677777777777641 11 2344677888899999999887 77776655554 56666
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
++.. +..++.++|+++.||.+.+...... .+++|++++. ++++++++++.|+++++++.
T Consensus 336 ~~~~-----------~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~~ 399 (407)
T PRK09064 336 GDPE-----------KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARLG 399 (407)
T ss_pred CCHH-----------HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5321 4567888887666999988654332 2579999885 89999999999999987653
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-28 Score=238.68 Aligned_cols=325 Identities=14% Similarity=0.142 Sum_probs=223.9
Q ss_pred CCCChHHHHHHHHHHHHcC-C----C---CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 105 DFDTPVLIAEAGINAIREG-F----T---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~-~----~---~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
+-+..+++.+++.+..... . . .+....-..++++.+++++ |. +++++|+|+++++..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g~----~~i~~~~g~t~al~~~l~~~~~ 81 (361)
T cd06452 10 GGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----GM----DEARVTPGAREGKFAVMHSLCE 81 (361)
T ss_pred CCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHc----CC----ceEEEeCCHHHHHHHHHHHhcC
Confidence 3344677777777765321 0 0 1111123457777777775 43 7899999999999999999999
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-------CCceEEEEcCCCCCcccCCCHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-------EKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-------~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
+||+|+++.++|.+....++..|++++.++.+.++++.+|++.++++++ ++++++++++|+||||...+ +
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~ 158 (361)
T cd06452 82 KGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---A 158 (361)
T ss_pred CCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---H
Confidence 9999999999988887788999999999999765556799999999885 37889999999999999877 8
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 329 (470)
++|+++|+++ +++||+|++|..... ..+... .+..++++|+||.++ ++.|+||+++++++++.+.+....
T Consensus 159 ~~i~~~~~~~-~~~vivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~~~l~~~~~~ 228 (361)
T cd06452 159 KKIAKVCHEY-GVPLLLNGAYTVGRM----PVSGKE----LGADFIVGSGHKSMA-ASAPIGVLATTEEWADIVFRTSQM 228 (361)
T ss_pred HHHHHHHHHc-CCeEEEECCcccCCc----CCCHHH----cCCCEEEecCCcccc-CCCCeEEEEECHHHHHHHhccccc
Confidence 8999999999 999999999974211 112222 245699999999997 666999999999999988765532
Q ss_pred cc--------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC--CCceEEEeeeccCcc
Q 012124 330 FT--------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYY 399 (470)
Q Consensus 330 ~~--------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~~g~~~~~~~~~~~ 399 (470)
++ ...+...+.++.+.+.. ..+++++..+. .++++++.+.|++++|+++.. +....++.++.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~ 304 (361)
T cd06452 229 FKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFD 304 (361)
T ss_pred cccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcc
Confidence 11 11112223334444432 12334433333 345578889999988887752 222233555654210
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
.. . ........++.+.|+++ ||.+.. .+..+++|++... ++++++.+++.|+++.
T Consensus 305 ~~-~--~~~~~~~~~~~~~L~~~-gI~~~~---~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 305 EI-A--KKHKRRGYFLYSELKKR-GIHGIK---PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred hh-h--hhccccchhHHHHHHHc-CceEEc---CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 00 0 00000234688888766 898532 2345689999855 8899999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=242.51 Aligned_cols=336 Identities=13% Similarity=0.086 Sum_probs=234.2
Q ss_pred EccCCCCCCCChHHHHHHHHHHHHcCCCCCCC--CcC--cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 98 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTP--NAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 98 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~--~~g--~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.|..+... ++|+.+++++.+.+.....++.. ..| ..++.+.+.+.+.+..| +++++|++|+|+++++..++.+
T Consensus 3 yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~i~~~~g~t~a~~~~~~~ 79 (381)
T PRK02948 3 YLDYAATT-PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG--GEEQGIYFTSGGTESNYLAIQS 79 (381)
T ss_pred eccCCCCC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHHH
Confidence 34444443 34777888888877642222211 011 12233334444444445 3678999999999999988888
Q ss_pred hc----CCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCH
Q 012124 174 VC----SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 174 l~----~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~ 246 (470)
++ ++||.|++....|+++.. .++..|++++.++++. ++.+|++.|++.+++++++|++++|+||||..++
T Consensus 80 ~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~- 156 (381)
T PRK02948 80 LLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDTVLASIQHANSEIGTIQP- 156 (381)
T ss_pred HHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh-
Confidence 75 578999999877766544 4567899999999863 3458999999999888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH-HHHHHH
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNK 325 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~-~~~l~~ 325 (470)
+++|.++|+++ |+++|+|+++... .....+ .. .+..+++.|++|.+|.+| +|++++++++ ...+..
T Consensus 157 --~~~I~~l~~~~-~~~vivD~~~~~g----~~~~~~---~~-~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~ 223 (381)
T PRK02948 157 --IAEIGALLKKY-NVLFHSDCVQTFG----KLPIDV---FE-MGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFP 223 (381)
T ss_pred --HHHHHHHHHHc-CCEEEEEChhhcc----ccccCc---cc-CCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCccc
Confidence 77899999999 9999999776531 111122 22 356688999999998777 7998877654 111100
Q ss_pred ----HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceE----EEeeecc
Q 012124 326 ----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAF----YLFIDFS 396 (470)
Q Consensus 326 ----~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~----~~~~~~~ 396 (470)
......++++.+.+.++.++++. ..++.++.+++.++.++++.+.|+++ |+++.... ..+ .+-+.++
T Consensus 224 ~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~ 299 (381)
T PRK02948 224 GTTHEKGFRPGTVNVPGIAAFLTAAEN---ILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIK 299 (381)
T ss_pred CCCCCCCcCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeC
Confidence 01123456788888888888875 24677888899999999999999988 65543221 121 1112223
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-------------------CCCcEEEEeec--CHHHHHHHHH
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-------------------DDTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-------------------~~~~iRls~~~--~~~~i~~~l~ 455 (470)
.. +..++...|. ++||.+.+|..+. ..+++|+|++. +++|++.+++
T Consensus 300 ~~------------~~~~~~~~l~-~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~ 366 (381)
T PRK02948 300 GI------------EGQYTMLECN-RRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIH 366 (381)
T ss_pred CC------------CHHHHHHhcc-cCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHH
Confidence 21 5567777764 5599999887421 13689999986 8999999999
Q ss_pred HHHHHHHhhCCCCC
Q 012124 456 RIKKGLLTLRPGVP 469 (470)
Q Consensus 456 ~l~~~l~~~~~~~~ 469 (470)
.|+++++++-+++.
T Consensus 367 ~l~~~~~~~~~~~~ 380 (381)
T PRK02948 367 ALETIGNQFYRGVK 380 (381)
T ss_pred HHHHHHHHHhcccC
Confidence 99999988766653
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=239.57 Aligned_cols=325 Identities=15% Similarity=0.104 Sum_probs=247.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
.++.+++++.+. ...| ...+..++++.+.+.+.+.+|.+ ..+.+++++++++++..++..++++||+|++.+++
T Consensus 20 ~~~~V~~a~~~~----~~~~-~~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~ 93 (401)
T PLN02409 20 IPERVLRAMNRP----NEDH-RSPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIG 93 (401)
T ss_pred CCHHHHHHhcCC----CCCC-CCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 367777666443 3333 35577899999999999988864 33578889999999999999999999999999999
Q ss_pred CCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 188 WVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 188 y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
|++. ...++..|++++.++.+.+ ..+|++.+++++++ +++++++++++||||..+|.+++.++++ |+++ |
T Consensus 94 ~~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~-g 169 (401)
T PLN02409 94 QFSLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQH-P 169 (401)
T ss_pred chhHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHh-hhcc-C
Confidence 9766 3667888999999998643 34899999999975 7899999999999999999665555555 9999 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-------------
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------- 328 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------------- 328 (470)
+++|+|++++. +.....+ +. .+..+++.|.+|.++.| .++||+++++++++.+.....
T Consensus 170 ~~~vvD~v~s~----g~~~id~---~~-~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T PLN02409 170 ALLLVDGVSSI----GALDFRM---DE-WGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWADYLKF 240 (401)
T ss_pred cEEEEEccccc----CCccccc---cc-cCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHHHHHH
Confidence 99999999873 2111122 21 24457888889999633 479999999998887653210
Q ss_pred -----hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEeeeccCcc
Q 012124 329 -----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDFSTYY 399 (470)
Q Consensus 329 -----~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~~~~~~ 399 (470)
...++++...+.++.++++.- .+...+++++++++.++++.+.|+++ |+++..+. ++..+|+.+|+.+
T Consensus 241 ~~~g~~~~~Tp~~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~ 317 (401)
T PLN02409 241 YKLGTYWPYTPSIQLLYGLRAALDLI--FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI 317 (401)
T ss_pred HhcCCCCCCCccHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCC
Confidence 012356666677777777641 13457888899999999999999887 88766542 2344677887654
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++.+.|++++||.+.+|..-...+.||++.+. +.+++..++..|+++++++.
T Consensus 318 -----------~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 318 -----------DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred -----------CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 67788888888889999998753346789999987 88999999999999998776
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=239.87 Aligned_cols=329 Identities=17% Similarity=0.178 Sum_probs=230.1
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.+.|..+.+.. +|+.+++++.+.+.... ..|....+..++.+.+.+.+.+.+|. ++++|++++|+++++..++
T Consensus 18 ~~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~--~~~~v~~~~~~t~~l~~~~ 94 (397)
T TIGR01976 18 RVFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNA--DPPEVVFGANATSLTFLLS 94 (397)
T ss_pred eEEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCC--CCCeEEEeCCHHHHHHHHH
Confidence 57777766663 57788888888876421 23544444444444444444444553 4568999999999998877
Q ss_pred HHh---cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 172 LAV---CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 172 ~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
.++ .+|||+|++.+|.|++.. ..++..|++++.++++.+ ++.+|++.++++++++++++++++|+||||..+
T Consensus 95 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~ 173 (397)
T TIGR01976 95 RAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAASNTLGSIV 173 (397)
T ss_pred HHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccC
Confidence 775 689999999999997754 445678999999998753 356899999999988999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+ +++|.++|+++ |+++|+|+++.. +.....+.. .+..+++.|++|.+| .|+||+++++++++.+.
T Consensus 174 ~---~~~i~~~~~~~-~~~~ivD~a~~~----~~~~~~~~~----~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~ 238 (397)
T TIGR01976 174 D---LAAITELVHAA-GALVVVDAVHYA----PHGLIDVQA----TGADFLTCSAYKFFG---PHMGILWGRPELLMNLP 238 (397)
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhc----cccCCCHHH----cCCCEEEEechhhcC---CceEEEEEcHHHHhhCC
Confidence 8 88999999999 999999999752 221222221 244577799999885 46899999999887765
Q ss_pred HHhhhcc----------CCCChHH---HHHHHHHHhc-CCC-----C---hHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 325 KIQSQFT----------SGASSIS---QKAGVAALGL-GYA-----G---GEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 325 ~~~~~~~----------~~~~~~~---q~a~~~~l~~-~~~-----~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
.....+. .+++... ..++..++.. |.. . ...+++++++..+.++++.+.|++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 318 (397)
T TIGR01976 239 PYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL 318 (397)
T ss_pred CccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4322111 1222222 2333333332 100 0 013566777778888999999988867877
Q ss_pred cCC-----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----------CCCcEEEEeec-
Q 012124 383 SEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----------DDTCIRISYAA- 445 (470)
Q Consensus 383 ~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----------~~~~iRls~~~- 445 (470)
..+ .+++ +.+.+++. +..++.++|.++ ||.+..|..|. ..++||+|++.
T Consensus 319 ~~~~~~~~~~~~-~~~~~~~~------------~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 384 (397)
T TIGR01976 319 YGVARLAARVPT-VSFTVHGL------------PPQRVVRRLADQ-GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHY 384 (397)
T ss_pred eCCCCccCCCce-EEEEeCCc------------CHHHHHHHHHHC-CeEEEeCccchHHHHHHhCCCCCCCeEEEEeecc
Confidence 654 3454 55565532 567888888665 99999886553 23689999986
Q ss_pred -CHHHHHHHHHHH
Q 012124 446 -SLTTLQAAVERI 457 (470)
Q Consensus 446 -~~~~i~~~l~~l 457 (470)
++++++.+++.|
T Consensus 385 ~t~~di~~l~~~l 397 (397)
T TIGR01976 385 NTAEEVDRLLEAL 397 (397)
T ss_pred CCHHHHHHHHHhC
Confidence 889999888754
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=244.60 Aligned_cols=347 Identities=15% Similarity=0.164 Sum_probs=238.8
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||..|.+ .+. .++.+.+++.+++.. ...|....+..++...+++.+.+.+|. ..+++++++|+++++.
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgsea~~ 110 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAK-LTHFSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEAVE 110 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHh-CcCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEEcCcHHHHHH
Confidence 5778999998743 344 478899999998865 344544435677788888888777664 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCcCC----CCCccCHHhHhhhccC---
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRIS----ENFLLDPKVLESKLTE--- 226 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~----~~~~~d~~~l~~~l~~--- 226 (470)
.+++.+. .+++.|++.+++|++........+ .+++.+|.+.. ..+..|++.|++.+++
T Consensus 111 ~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 190 (413)
T cd00610 111 AALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPE 190 (413)
T ss_pred HHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCC
Confidence 9998873 578999999999999765443322 23556665421 1244589999998865
Q ss_pred CceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++++++...+|++|..+ +.+++++|.++|++| ++++|+||+|..+...+.. ... ... +....+.||||.++
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~g~g~~g~~-~~~-~~~---~~~~d~~t~sK~l~- 263 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKH-GILLIADEVQTGFGRTGKM-FAF-EHF---GVEPDIVTLGKGLG- 263 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcch-hhH-hhc---CCCCCeEEEccccc-
Confidence 455555555577889876 677899999999999 9999999999976333321 111 111 11112568999998
Q ss_pred ccceeeEEEcCHHHHHHH--HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CC
Q 012124 306 TGWRLGYIAGPKHFVAAC--NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GV 380 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l--~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~ 380 (470)
.|+|+||+++++++++.+ .......+++.+++.|.++.+.|+.- ++ .++.++++++.+.+.+.|+++. ++
T Consensus 264 ~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~ 338 (413)
T cd00610 264 GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLLENAAELGEYLRERLRELAEKHPL 338 (413)
T ss_pred CccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 689999999999999886 33344456778889888888777631 11 2345555666666666665531 22
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
.......|.++|+.+++.... . .........+++.|.++ ||.+.|+. .+++|++++. +++++++++++|+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~-gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~ 410 (413)
T cd00610 339 VGDVRGRGLMIGIELVKDRAT--K-PPDKELAAKIIKAALER-GLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALD 410 (413)
T ss_pred EEEeecCceEEEEEEecCCCc--C-CcchHHHHHHHHHHHHC-CeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHH
Confidence 111233466688887642000 0 00001456788887765 99999975 5789998775 8999999999998
Q ss_pred HHH
Q 012124 459 KGL 461 (470)
Q Consensus 459 ~~l 461 (470)
+++
T Consensus 411 ~~l 413 (413)
T cd00610 411 EAL 413 (413)
T ss_pred HhC
Confidence 753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-28 Score=240.22 Aligned_cols=329 Identities=20% Similarity=0.249 Sum_probs=234.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEec-ChHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSI 167 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~-----~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~-g~~~al 167 (470)
.+++.++.|.|++.+|+.+.++..++ .....|.+ ..|.+++++++++++.+.+|. +.+++++++ |++++.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~~ 95 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN--EFYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDEATAAAE 95 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc--cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCchHHHHH
Confidence 35689999999998888888777666 33345655 689999999999999998885 445676666 454555
Q ss_pred HHHHHHhcCC--CCeEEEcCCCCCChHHHHHHcC----CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSP--GDEVIIPAPFWVSYPEMARIAD----ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g----~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
..+..+++.+ ||+|++++|.|+.+...+...| ++++.++.+. ++.+|++.+++++++++++|++++|+ |||
T Consensus 96 ~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~~~-~~G 172 (398)
T cd00613 96 AAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQYPN-TLG 172 (398)
T ss_pred HHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEECCC-CCc
Confidence 5555556666 9999999999999998888877 9999999853 34589999999999899999998885 899
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc----cceeeEEEcCH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGPK 317 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~----G~r~G~~~~~~ 317 (470)
.+. +.+++|.++|++| |+++|+|+++...... .... ..+..++++|++|.+ +| |+++||++.++
T Consensus 173 ~~~--~~l~~i~~la~~~-g~~livD~~~~~~~~~----~~~~----~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~ 240 (398)
T cd00613 173 VFE--DLIKEIADIAHSA-GALVYVDGDNLNLTGL----KPPG----EYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKK 240 (398)
T ss_pred eec--chHHHHHHHHHhc-CCEEEEEeccccccCC----CChH----HcCCCEEEeeccccC-CCCCCCCCceeEEEEhh
Confidence 984 3469999999999 9999999987542211 0111 124569999999998 46 78999999998
Q ss_pred HHHHHHHHH-----------------------------hhhccCCCC-hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012124 318 HFVAACNKI-----------------------------QSQFTSGAS-SISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367 (470)
Q Consensus 318 ~~~~~l~~~-----------------------------~~~~~~~~~-~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (470)
++++.+... .....+..+ ...|.+...+... .+..++++++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~---~~~g~~~~~~~~~~~~ 317 (398)
T cd00613 241 ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL---GPEGLKEIAERAHLNA 317 (398)
T ss_pred hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHH
Confidence 887764110 000011122 2333333333332 2567788899999999
Q ss_pred HHHHHHhccCCCCeecCCCceEE--EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec
Q 012124 368 DFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA 445 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~ 445 (470)
+++.+.|+++++.. .+.+.++ ++++++... ..+..++++.|.++ ||.+.... ....+.+|++++.
T Consensus 318 ~~l~~~L~~~~~~~--~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~L~~~-gi~~~~~~-~~~~~~lRis~~~ 384 (398)
T cd00613 318 NYLAKRLKEVGGVL--PFNGPFFHEFVLRLPPLY---------GIRAEDLAKALIDG-GFHAPTMY-LPVDGTLMIEPTE 384 (398)
T ss_pred HHHHHHHHhcCCcc--cCCCCeeEEEEEEcCCcc---------hHHHHHHHHhhhhc-Cccccccc-cCCCCeEEEEcCC
Confidence 99999999875443 2233333 466765310 01567888888766 88764321 1234789999986
Q ss_pred --CHHHHHHHHHHH
Q 012124 446 --SLTTLQAAVERI 457 (470)
Q Consensus 446 --~~~~i~~~l~~l 457 (470)
+++||+++++.|
T Consensus 385 ~~t~edid~~~~~L 398 (398)
T cd00613 385 TETKEELDALLEAL 398 (398)
T ss_pred CCCHHHHHHHHHhC
Confidence 899999988754
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=232.35 Aligned_cols=319 Identities=13% Similarity=0.159 Sum_probs=225.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p 186 (470)
.+++.+.+++...... +. ..+.+..+.+.+.+.+..|.+.+...|++++|+++++..++..++.+||+|++.++
T Consensus 9 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~ 82 (355)
T TIGR03301 9 STSATVRDAMLVDWCH----WD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLIN 82 (355)
T ss_pred CCCHHHHHHhhhhccC----CC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECC
Confidence 3466777777663221 21 12234455555555555565432236888999999999999999888888776665
Q ss_pred CCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 187 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 187 ~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
.+.+ +...++..|.+++.++.+. ++.+|++.+++++++ +.+.+++++++||||...+ +++|+++|++| ++
T Consensus 83 ~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~-~~ 156 (355)
T TIGR03301 83 GAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSH-GA 156 (355)
T ss_pred CchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHc-CC
Confidence 5544 4567788999999999853 356899999999864 4556777889999999998 78999999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHHHHh--------------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ-------------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~-------------- 327 (470)
++|+|++++.. . ...++.. .+..++++|++|.+ |++| +||+++++++++.+....
T Consensus 157 ~livD~~~s~g---~-~~~~~~~----~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T TIGR03301 157 VLIVDAMSSFG---A-IPIDIEE----LDVDALIASANKCLEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWAYM 226 (355)
T ss_pred EEEEEeccccC---C-cccchhh----cCccEEEecCCcccccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHHHh
Confidence 99999877642 1 1122222 34568899999987 4445 799999999888765210
Q ss_pred ---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC---CceEEEeeeccCccCC
Q 012124 328 ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGS 401 (470)
Q Consensus 328 ---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~ 401 (470)
....++++...+.++.++++.-. .+.+.++.+++++++++++.+.|+++ |+++..+ .+++++|+.+|...
T Consensus 227 ~~~~~~~~t~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-- 302 (355)
T TIGR03301 227 EKTGKWRFTPPTHTVYAFAQALEELE-AEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP-- 302 (355)
T ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC--
Confidence 11234567777777666665310 01236777888899999999999887 7765433 34667888887520
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
..+..++.++|.++ ||.+.+|..+.. +++|+++.. +.++++++++.|+++
T Consensus 303 -------~~~~~~~~~~l~~~-gi~i~~~~~~~~-~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 303 -------DFDFDDFYQELKER-GFVIYPGKLTLA-DTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred -------cchHHHHHHHHHHC-CEEEECCccccc-cEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 01456788887765 999999876543 799999865 889999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=236.94 Aligned_cols=323 Identities=18% Similarity=0.146 Sum_probs=235.4
Q ss_pred ChHHHHHHHHHHHHcCC------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-----C
Q 012124 108 TPVLIAEAGINAIREGF------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-----S 176 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-----~ 176 (470)
+++.+++++.+.+.+.. +.| +..+...+++++++++.. .|. .++++|++|+|+++++.++++++. +
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~ 87 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEILK 87 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhccc
Confidence 46778888888776421 223 235667888988888753 342 267899999999999999998762 4
Q ss_pred C-CCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 177 P-GDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 177 ~-gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +|+|++..+.|+.+... ++..|++++.+|++.+ +.+|++.++++++++++++++++|+||||..++ +++|
T Consensus 88 ~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~--g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I 162 (382)
T TIGR03403 88 GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQ--GTITAEQVREAITEKTALVSVMWANNETGMIFP---IKEI 162 (382)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCC--CCCCHHHHHHhcccCCeEEEEEcccCCCccccC---HHHH
Confidence 5 47899988777766544 5668999999998743 458999999999989999999999999999999 6788
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH--HHH---HHHh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--AAC---NKIQ 327 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~--~~l---~~~~ 327 (470)
.++|+++ |+++|+|+++.. +..+..+.. .+-.+++.|++|.+|.+| +|+++..+... ..+ ....
T Consensus 163 ~~la~~~-g~~~ivD~a~~~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~ 231 (382)
T TIGR03403 163 GEICKER-GVLFHTDAVQAI----GKIPVDVQK----AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMG 231 (382)
T ss_pred HHHHHHc-CCEEEEechhhc----CCCccCccc----cCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCC
Confidence 9999999 999999999763 211112221 234488899999888667 57776544321 111 0011
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCccCCccc
Q 012124 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAE 404 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~ 404 (470)
.....+++...+.++..+++. ..++++..++++++.++++.+.|++++|+.+..+.. ..++.+.++..
T Consensus 232 ~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 302 (382)
T TIGR03403 232 GRRSGTLNVPYIVAMGEAMRL---ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV------ 302 (382)
T ss_pred CcccCCcChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC------
Confidence 112345777788788888764 355678888899999999999999888888876531 22345566542
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------------C-----CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 405 GFGKIENSESLCRYLLDKAQVALVPGDAFG--------------D-----DTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 405 ~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------------~-----~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
+..++...|. +.||.+..|+.+. . .+.+|+|++. +++|++++++.|++++++
T Consensus 303 ------~~~~~~~~L~-~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 303 ------EGEAMLWDLN-KAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred ------CHHHHHHhhc-cCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 6677777765 4599999876542 1 2579999997 899999999999999877
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
++
T Consensus 376 ~~ 377 (382)
T TIGR03403 376 LR 377 (382)
T ss_pred HH
Confidence 64
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=233.33 Aligned_cols=302 Identities=13% Similarity=0.115 Sum_probs=220.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS 210 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~ 210 (470)
..+..+.+.+.+.+.+|.+-+.+.|++|+|++++++.++..+..+||.+++..+++++. ...++..|++++.++++.
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~- 111 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE- 111 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-
Confidence 44455555555555566532235799999999999999999988999888877766655 366788999999999864
Q ss_pred CCCccCHHhHhhhccC--CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 211 ENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~--~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
++.+|++.+++++++ +++++.+++++||||..+| +++|+++|+++ ++++|+|++++. + ..+.++..+
T Consensus 112 -~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~-g~~livD~~~~~---g-~~~~~~~~~-- 180 (363)
T TIGR02326 112 -VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRH-GKVTIVDAMSSF---G-GIPIDIAEL-- 180 (363)
T ss_pred -CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHc-CCEEEEEccccc---c-Ccccchhhc--
Confidence 345899999999864 4567788899999999999 78999999999 999999998763 2 222333333
Q ss_pred CCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh------------------hhccCCCChHHHHHHHHHHhcCC
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------------SQFTSGASSISQKAGVAALGLGY 350 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~q~a~~~~l~~~~ 350 (470)
+..++++|++|.++ ++.++||++++++.++.+.... ....+.++.+.+.++.++++.-.
T Consensus 181 --~~D~~~~s~~K~l~-~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~ 257 (363)
T TIGR02326 181 --HIDYLISSANKCIQ-GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELE 257 (363)
T ss_pred --CccEEEecCccccc-cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 34488999999883 3334799999998877643100 01233567778888776665310
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC---CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012124 351 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427 (470)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 427 (470)
. ...+++++++++++++++.+.|+++ |+.+..+ .++...|+.+|+... .+..++.+.|.++ ||.+
T Consensus 258 ~-~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~L~~~-gi~v 325 (363)
T TIGR02326 258 K-EGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD---------YRFADFYQRLKEQ-GFVI 325 (363)
T ss_pred H-hhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC---------CCHHHHHHHHHHC-CEEE
Confidence 0 1236678899999999999999887 7766433 355667788775200 1567788888655 9999
Q ss_pred ECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 428 VPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 428 ~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
.||..+ ..++||+++.. +.++++++++.|++++.
T Consensus 326 ~~g~~~-~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 326 YPGKVS-QVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred ECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 999766 35789999754 89999999999988763
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=234.12 Aligned_cols=333 Identities=16% Similarity=0.177 Sum_probs=233.4
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||.+|... +. .++.+.+++.+++.+... . ......+++..+++++.+..+ .+.+++++++++++.
T Consensus 27 ~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~ 100 (377)
T PRK02936 27 NGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH-V-SNLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANE 100 (377)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-c-ccccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHH
Confidence 57788999998632 22 478899999999876322 2 233557899999999986433 258999999999999
Q ss_pred HHHHHhc-CCC-CeEEEcCCCCCChHHH-HHHcCCEEE---EecCcCCCCCc--cCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 169 QAVLAVC-SPG-DEVIIPAPFWVSYPEM-ARIADATPV---ILPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 169 ~~~~~l~-~~g-d~Vlv~~p~y~~~~~~-~~~~g~~~~---~v~~~~~~~~~--~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
.+++... .+| +.|++.+++|++.... ....+.... ..|..++..+. .|++.+++.+.+++++|++..+++++
T Consensus 101 ~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~ 180 (377)
T PRK02936 101 AALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGEG 180 (377)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCCC
Confidence 9998542 244 6799999999865432 222232111 11111100000 27899999998889999998889999
Q ss_pred ccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 241 GSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 241 G~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
|.. .+.+.+++|.++|++| |+++|+||+|.++.+.+.. ..+....- ... +.+|||.++ +|+|+||+++++++
T Consensus 181 G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~-~~~~~~~~-~~d---i~t~sK~l~-~G~~ig~v~~~~~~ 253 (377)
T PRK02936 181 GVIPADPAFLQEVQTLCKKF-GALLIIDEVQTGIGRTGTL-FAYEQFGL-DPD---IVTVAKGLG-NGIPVGAMIGKKEL 253 (377)
T ss_pred CCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhhCC-CCc---EEEEccccc-CCCccEEEEEcHHH
Confidence 876 5889999999999999 9999999999987665432 12212211 112 347999998 99999999999999
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCCeecCCCceEEEeeec
Q 012124 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~g~~~~~~~ 395 (470)
++.+.......+++.+++.|.++.++|+.... ++++ +.++++.+.+.+.|++ ++.+.... ..|+++|+++
T Consensus 254 ~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~ 327 (377)
T PRK02936 254 GTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-PSFL----EEVQEKGEYFLQKLQEELEHLECVKNIR-GKGLMIGIEC 327 (377)
T ss_pred HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHH----HHHHHHHHHHHHHHHHHHhhCCcEEeEe-ecceEEEEEe
Confidence 98886555556677899999999999975311 2333 4445555555555554 33322222 3467899998
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCHHHHHHHHHHHHHHH
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASLTTLQAAVERIKKGL 461 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~--~~~~~~i~~~l~~l~~~l 461 (470)
++ +...+.+.|.+ .||.+.|+. .+++|+++ ..+++++++++++|++++
T Consensus 328 ~~-------------~~~~~~~~l~~-~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 328 TE-------------EVAPVIEQLRE-EGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred cc-------------hHHHHHHHHHH-CCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 64 35667776655 499998853 47899996 349999999999998753
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=235.29 Aligned_cols=332 Identities=12% Similarity=0.166 Sum_probs=235.0
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||..|. ..+. .++.+.+++.+++.+.. .+... ...+....+++.+.+..+ .+.+++++++++|..
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~-~~~~~~~~l~~~l~~~~~----~~~~~~~~sGseA~e 111 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLW-HISNV-FTNEPALRLAKKLIDATF----AERVFFANSGAEANE 111 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcC-cccCc-cCCHHHHHHHHHHHhhCC----CCEEEEeCchHHHHH
Confidence 567889998873 2333 37899999999887522 11111 112334466666655332 369999999999999
Q ss_pred HHHHHhc--------CCCCeEEEcCCCCCChHHHH-HHcC------------CEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 169 QAVLAVC--------SPGDEVIIPAPFWVSYPEMA-RIAD------------ATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 169 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~-~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
.+++... ...+.|+..+-+|++..... ...| .+++.++. .|++.+++.+.++
T Consensus 112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 184 (403)
T PRK05093 112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVIDDH 184 (403)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcCC
Confidence 9988642 12357888888888865422 2111 11222222 2889999999878
Q ss_pred ceEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccc
Q 012124 228 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~--s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+++|+++ |.||+|.++ +.+.+++|+++|++| |+++|+||+|.++.+.+.... ....+.+ + +.||||.++
T Consensus 185 ~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~~~~~~~~~p--d----i~s~sK~l~ 256 (403)
T PRK05093 185 TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQH-NALLIFDEVQTGMGRTGDLFAYMHYGVTP--D----ILTSAKALG 256 (403)
T ss_pred eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccchhhhhcCCCC--C----EEEeccccc
Confidence 8888777 777777654 899999999999999 999999999998766654211 1122222 2 678999998
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CCe
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVK 381 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~ 381 (470)
+|+|+||+++++++++.+.......+++.+++.|.++.++|+.- . ..+..+.++++++++.+.|+++. ++.
T Consensus 257 -~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~---~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 330 (403)
T PRK05093 257 -GGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDII---N--TPEVLEGVKARRQRFVDGLQKINQKYGVF 330 (403)
T ss_pred -CCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 99999999999999998876555566788999999999987641 1 13456788889999999888751 222
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
...+..|+++|+.++... ..+..++++.|+++ ||.+.|+. .+++|++++. +++++++++++|++
T Consensus 331 ~~~~~~G~~~~~~l~~~~---------~~~~~~~~~~l~~~-Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 331 SEIRGMGLLIGAELKPQY---------KGRARDFLNAAAEE-GVMVLVAG----PDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred EeEeeCceEEEEEecCcc---------hhHHHHHHHHHHHC-CeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 234456888999986421 01456888888876 89998742 4789997554 89999999999999
Q ss_pred HHHhh
Q 012124 460 GLLTL 464 (470)
Q Consensus 460 ~l~~~ 464 (470)
+++++
T Consensus 397 ~l~~~ 401 (403)
T PRK05093 397 AVAKV 401 (403)
T ss_pred HHHHh
Confidence 98764
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=238.97 Aligned_cols=347 Identities=17% Similarity=0.207 Sum_probs=239.0
Q ss_pred cCCCeEEccCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|..... .++.+.+++.+++.+....+.+..+..+|+++|++++. ..++|++++|++++++
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGseA~e 118 (423)
T TIGR00713 46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVP-------SVEMVRFVNSGTEATM 118 (423)
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHHHHHH
Confidence 6788999999986542 37999999999998754433356688899999998752 2368999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH---cCCEEEEecCcCC-------CCC---ccCHHhHhhhcc---CCceE
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRIS-------ENF---LLDPKVLESKLT---EKSRL 230 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~-------~~~---~~d~~~l~~~l~---~~~~~ 230 (470)
.+++... ...++|+..+++|+++...+.. .|......+..+. +.. ..|++.+++.++ +++++
T Consensus 119 ~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aa 198 (423)
T TIGR00713 119 SAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAG 198 (423)
T ss_pred HHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEE
Confidence 9888642 2458999999999998654332 1111111111100 000 027899998886 56788
Q ss_pred EEE-cCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccc
Q 012124 231 LIL-CSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 231 i~l-~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
|++ +.++| +|.+++ ++.+++|.++|++| |+++|+||+|.++.++.........+.+ + +.+|||.++ +|+
T Consensus 199 vi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~r~g~~~~~~~~~~~p--D----i~t~sK~l~-~G~ 269 (423)
T TIGR00713 199 VIVEPVAGN-MGVVPPKPEFLAGLRALTEEY-GSLLIFDEVMTGFRVALGGAQEYFGVEP--D----LTTLGKIIG-GGL 269 (423)
T ss_pred EEEeCCCCC-CCCcCCCHHHHHHHHHHHHHh-CCEEEEEccccccccCcchhHHHhCCCc--c----hhhhhhhhc-CCC
Confidence 887 57788 788877 68999999999999 9999999999988654221122222222 2 347999998 999
Q ss_pred eeeEEEcCHHHHHHHHH---HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-C
Q 012124 309 RLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-E 384 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~ 384 (470)
|+||+++++++++.+.. .....+++.+++.|.++.+.|+.-.. ..+.+++++..+..++.+.+.+++. ++... .
T Consensus 270 pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~ 347 (423)
T TIGR00713 270 PVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDT-GIPHTVN 347 (423)
T ss_pred ceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEE
Confidence 99999999999988863 22345678899999999888874221 3467778888888888888888776 44332 2
Q ss_pred CCceE-EEeeeccCccCCcccCCCCCCC---HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 385 PQGAF-YLFIDFSTYYGSEAEGFGKIEN---SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~~~g~-~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
..+++ .+++..+.... ... .+..+ ...+++.|+++ ||.+.++ .| +.+|+++..+++++++++++|+++
T Consensus 348 ~~g~~~~v~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~-Gv~v~~~-~~---~~~~l~~~~t~~~i~~~~~~l~~~ 419 (423)
T TIGR00713 348 RVGSMFSLFFTEEEVTN--YAD-AKKSDTELFAKFFHEMLDK-GVFLPPS-QF---EACFLSAAHTEEDIENTIEAAEEV 419 (423)
T ss_pred eeccEEEEEEecCCCCC--hhh-hhcccHHHHHHHHHHHHHC-CeEEecC-Cc---cceeeECCCCHHHHHHHHHHHHHH
Confidence 23333 33343221100 000 00001 23577778764 9988754 23 468998888999999999999999
Q ss_pred HHhh
Q 012124 461 LLTL 464 (470)
Q Consensus 461 l~~~ 464 (470)
++++
T Consensus 420 l~~~ 423 (423)
T TIGR00713 420 FAEL 423 (423)
T ss_pred HhhC
Confidence 8753
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=230.57 Aligned_cols=336 Identities=19% Similarity=0.205 Sum_probs=234.5
Q ss_pred CCCeEEccCCC-CCCCChHHHHHHHHHHHHcCCCC---CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 93 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~---y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
++++++|++++ ..+..++++++++.+++.+.... +....|..+..+.+++.+.+..|. +..+++++| .++..
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG-~~An~ 119 (406)
T PRK13393 44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSG-YVSNW 119 (406)
T ss_pred CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCc-HHHHH
Confidence 35678888886 55666899999999998763221 112224344445555555544452 334555555 56888
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCCCccc
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGS 242 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPtG~ 242 (470)
.++..+.. +||.|+.....|......++..|.+++.++. .|++.+++.++ +++++|++++++||+|.
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~ 192 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFESVYSMDGD 192 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCc
Confidence 88887655 7888877777777777778888888877764 26666666553 35778889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 321 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~ 321 (470)
+.+ +++|.++|+++ ++++|+||+|+...++..+. .+....+. .+.+|+++||||.+|++| ||+++++++++
T Consensus 193 ~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~G~-g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~~~~ 264 (406)
T PRK13393 193 IAP---IAEICDVAEKH-GAMTYLDEVHAVGLYGPRGG-GIAEREGLADRLTIIEGTLAKAFGVMG---GYITGSAALCD 264 (406)
T ss_pred hhC---HHHHHHHHHHc-CCEEEEECCccccccCCCCC-chhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCHHHHH
Confidence 999 88899999999 99999999998544443221 11121111 234688899999998777 99999999999
Q ss_pred HHHHHhhhc--cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc
Q 012124 322 ACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 322 ~l~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~ 399 (470)
.+......+ +.+.++..+.++.++|+.- ++. ...+.+++++++++.+.|+++ |+.+..+.+.+ +.+.+++..
T Consensus 265 ~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-~~v~~~~~~ 338 (406)
T PRK13393 265 FIRSFASGFIFTTSLPPAVAAGALASVRHL---KAS-SAERERHQDRVARLRARLDKA-GIPHLPNPSHI-VPVMVGDPV 338 (406)
T ss_pred HHHHhCcCceecCccCHHHHHHHHHHHHHH---hhC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCe-EEEEeCCHH
Confidence 887765432 4456777788888888741 222 223456778888999999876 77666666665 444443211
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++.++|++++||.+.++..... .+++|++++. ++++++++++.|+++++++
T Consensus 339 -----------~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 339 -----------LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred -----------HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 4567888888767999988654332 2689999885 9999999999999988764
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=233.13 Aligned_cols=314 Identities=17% Similarity=0.198 Sum_probs=225.2
Q ss_pred ChHHHHHHHHHHHHcCCC--CCCC-------CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC--
Q 012124 108 TPVLIAEAGINAIREGFT--RYTP-------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-- 176 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~--~y~~-------~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~-- 176 (470)
+|+.+.+++.+.+..... ..+. .....++|+.+++++ |.+ +++++++|+|+++++.+++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~a~~~~~~~l~~~~ 85 (373)
T cd06453 11 KPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFI----NAP-SPDEIIFTRNTTEAINLVAYGLGRAN 85 (373)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCCHHHHHHHHHHHhhhcC
Confidence 367788888877754211 0001 122345666776665 432 367999999999999999999887
Q ss_pred -CCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 177 -PGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 177 -~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+||+|++++++|++.. ...+..|++++.++++ .++.+|++.+++.+++++++|++++++||||..++ +++
T Consensus 86 ~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~~~ 160 (373)
T cd06453 86 KPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---VKE 160 (373)
T ss_pred CCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---HHH
Confidence 8999999999998853 3445789999999986 34559999999999889999999999999999999 778
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh--
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ-- 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-- 329 (470)
|.++|+++ +++||+|++|+.... ..++.. .+..+++.|++|.++ + .++||+++++++++.+......
T Consensus 161 i~~~~~~~-~~~li~D~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~~-~-~g~g~~~~~~~~~~~~~~~~~g~~ 229 (373)
T cd06453 161 IGEIAHEA-GVPVLVDGAQSAGHM----PVDVQD----LGCDFLAFSGHKMLG-P-TGIGVLYGKEELLEEMPPYGGGGE 229 (373)
T ss_pred HHHHHHHc-CCEEEEEhhhhcCce----eeeccc----cCCCEEEeccccccC-C-CCcEEEEEchHHhhcCCCeecCCC
Confidence 99999999 999999999874211 112221 233477788999997 4 6689999999888876543210
Q ss_pred -------------------ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC--ce
Q 012124 330 -------------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GA 388 (470)
Q Consensus 330 -------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g 388 (470)
....++.....++.++++.- .+..+++++++.++.++++.+.|++++++++..+. .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 307 (373)
T cd06453 230 MIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYL--EKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRA 307 (373)
T ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccC
Confidence 11134444444444444421 12235677788888899999999988888775322 23
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEeec--CHHHHHHHHHHH
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iRls~~~--~~~~i~~~l~~l 457 (470)
.++++.++.. +..++.+.|.+ +||.+.+|..+ +.++++|++++. ++++++++++.|
T Consensus 308 ~~~~~~~~~~------------~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 308 GVVSFNLEGI------------HPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CeEEEEECCc------------CHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 3466677643 67788888765 59999887653 235799999996 889999988754
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.5e-27 Score=235.88 Aligned_cols=341 Identities=19% Similarity=0.253 Sum_probs=239.9
Q ss_pred HHHHHHHHHHhcC----CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHH---HHHHHHcCCC
Q 012124 81 AITDQATALAQAG----VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAIC---HKLKEENGLS 151 (470)
Q Consensus 81 ~~~~~~~~~~~~~----~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia---~~l~~~~g~~ 151 (470)
++.....+....+ ...+.++.|.++...|..+.+..... .....|.+. .-...+++++. +++.+.+|.
T Consensus 51 ~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~--~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~- 127 (447)
T PRK00451 51 ELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRS--EFYTAYTPYQPEISQGTLQAIFEYQTMICELTGM- 127 (447)
T ss_pred HHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhch--hHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCC-
Confidence 4444444444333 15678889999988887776655433 222335441 11233666666 445777785
Q ss_pred CCCCcEEEecChHHHHHHHHHHhc-CCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 152 YTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 152 ~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+.+++++|+|+++++..++.++. .+||+|++.++.|+.+...++. .|++++.++++++ .+|++.+++++++
T Consensus 128 -~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~---~~d~~~l~~~i~~ 203 (447)
T PRK00451 128 -DVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG---VTDLEALEAAVDD 203 (447)
T ss_pred -CcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC---CCCHHHHHHhcCC
Confidence 55689999999999999888874 7999999999999998877654 6999999998643 5899999999998
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEE--eccccccccCCCCcccccccCCCCCceEEEe---ccCc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS--DEIYEHIIYAPATHTSFASLPGMWERTLTVN---GFSK 301 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~--Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~---S~sK 301 (470)
++++|++++| ||||.+.+ +++|.++|+++ |+++|+ |..... . ... ....+..++++ +|||
T Consensus 204 ~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~-~~~~iv~~d~~~~g-----~-~~~----~~~~~~D~~~~s~~k~~~ 268 (447)
T PRK00451 204 DTAAVVVQYP-NFFGVIED---LEEIAEIAHAG-GALFIVGVDPVSLG-----L-LKP----PGEYGADIVVGEGQPLGI 268 (447)
T ss_pred CeEEEEEECC-CCCCeeCC---HHHHHHHHHHC-CCEEEEEcChHHhc-----c-CCC----cccCCCCEEEECCCcCCC
Confidence 9999999999 89999988 88999999999 999887 332211 0 001 11234456665 7888
Q ss_pred ccccccceeeEEEcCHHHHHHH----------------------------HHHhhhccCCCChHHH-HHHHHHHhcCCCC
Q 012124 302 AFAMTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQ-KAGVAALGLGYAG 352 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q-~a~~~~l~~~~~~ 352 (470)
.+++.|+++||+++++++++.+ +..+...+.+.+...| .++..++... .
T Consensus 269 ~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~ 346 (447)
T PRK00451 269 PLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLL--G 346 (447)
T ss_pred CCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHH--C
Confidence 8878899999999999888773 1112222333333334 3333344321 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe--eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEE-EEC
Q 012124 353 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA-LVP 429 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~-v~p 429 (470)
+..++++++++.++++++.+.|++++|+++. .+++|.+ ++++. +..+++++|.++ ||. ..+
T Consensus 347 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~-------------~~~~~~~~L~~~-gi~~~~~ 410 (447)
T PRK00451 347 PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK-------------PAEEVNEALLEK-GILGGYD 410 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC-------------CHHHHHHHHHhc-CCCCCcc
Confidence 5678999999999999999999998788775 3344433 45431 567899999877 554 355
Q ss_pred CCCCCC--CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 430 GDAFGD--DTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 430 g~~f~~--~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+..|+. .+++|++++. ++++++++++.|++++
T Consensus 411 ~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 411 LGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 665542 4689999974 8999999999998764
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=229.38 Aligned_cols=302 Identities=16% Similarity=0.168 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISEN 212 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~ 212 (470)
+..+.+.+.+.+..|.+-+.+.|++++|+++++..++..+..+||.|++.+++|++.. ..++..|++++.++.+. +
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~--~ 114 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE--D 114 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC--C
Confidence 3444444444444564323356889999999999999999999999999988887763 67788999999999863 3
Q ss_pred CccCHHhHhhhccC--CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 213 FLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 213 ~~~d~~~l~~~l~~--~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
+.+|++.+++++++ +++++++++++||||...| +++|.++|+++ ++++|+|+++. ++. ...++..+
T Consensus 115 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~-~~~livDa~~~---~g~-~~~~~~~~---- 182 (368)
T PRK13479 115 EPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRH-GKRLIVDAMSS---FGA-IPIDIAEL---- 182 (368)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHc-CCEEEEEcccc---cCC-cccccccc----
Confidence 45899999998854 4667889999999999999 78899999999 99999997654 222 22233322
Q ss_pred CceEEEeccCccc-ccccceeeEEEcCHHHHHHHHHHhh-----------------hccCCCChHHHHHHHHHHhcCCCC
Q 012124 291 ERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQS-----------------QFTSGASSISQKAGVAALGLGYAG 352 (470)
Q Consensus 291 ~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~q~a~~~~l~~~~~~ 352 (470)
+..++++|++|.+ |.+| +||+++++++++.+..... ...++++...+.++.++++.-. .
T Consensus 183 ~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~-~ 259 (368)
T PRK13479 183 GIDALISSANKCIEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE-E 259 (368)
T ss_pred CceEEEecCccccccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH-H
Confidence 3347788999976 5566 7999999998887654321 1113456666556655554310 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 353 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
..++++..++++++++.+.+.|+++ |+.+..+. .+..+.+.++... ..+..++.++|.++ ||.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~L~~~-gi~v~~ 328 (368)
T PRK13479 260 EGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP---------AYDFKEFYERLKEQ-GFVIYP 328 (368)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCC---------CcCHHHHHHHHHHC-CEEEec
Confidence 2245677788999999999999888 77654331 1222222333210 01567888888766 999999
Q ss_pred CCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 430 GDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 430 g~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
|..+ ..+++|++... ++++++.+++.|+++++++.
T Consensus 329 g~~~-~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 329 GKLT-QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CCCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8654 35689999744 99999999999999998764
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=232.91 Aligned_cols=309 Identities=17% Similarity=0.176 Sum_probs=229.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC------------
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 176 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~------------ 176 (470)
+..+.+.+...+......|....+..++++++++++.+.+|.+..++++++|+|+++++.+++.++..
T Consensus 12 ~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~ 91 (345)
T cd06450 12 PALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGR 91 (345)
T ss_pred HHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccc
Confidence 34455666666655556688888999999999999999889764566899999999999999988742
Q ss_pred CC--CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHH
Q 012124 177 PG--DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 177 ~g--d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
++ +.|++++++|..+...++..|.+++.++++++ +.+|++.|++++++ ++++++++.++||||...+
T Consensus 92 ~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~--- 166 (345)
T cd06450 92 GIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP--- 166 (345)
T ss_pred ccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---
Confidence 33 47888999999998888888999999998754 36999999999976 7888888999999999977
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 328 (470)
+++|+++|+++ |+++++|++|+.+.+........ .....+-..+..|++|.++ ++.++|+++.+
T Consensus 167 ~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~------------ 230 (345)
T cd06450 167 LEEIADLAEKY-DLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKYGL-VPLGCSAVLVR------------ 230 (345)
T ss_pred HHHHHHHHHHh-CCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHhhC-CCcchHHHHHH------------
Confidence 88999999999 99999999998766432111111 1111123356779999875 77788988655
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeeccCccCCcccCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 407 (470)
.+.+.++...+. ...+++++++..+.++++.+.|.+++++.+.. +..+++.| .++....
T Consensus 231 -------~~~~~~~l~~l~-----~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f-~~~~~~~------- 290 (345)
T cd06450 231 -------ALKLWATLRRFG-----RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCF-RLKPSVK------- 290 (345)
T ss_pred -------HHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEE-EECCcch-------
Confidence 444445555553 45577788888889999999999988887654 55666444 5543100
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKK 459 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~ 459 (470)
...+..++.+.|.++ |+.+.++..+..++++|++++. +.++++++++.|++
T Consensus 291 ~~~~~~~i~~~L~~~-g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 291 LDELNYDLSDRLNER-GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred hhHHHHHHHHHHHhc-CCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 000456788888766 5555565555556799999984 78999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=227.24 Aligned_cols=224 Identities=14% Similarity=0.206 Sum_probs=177.8
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCC
Q 012124 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 200 (470)
Q Consensus 125 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~ 200 (470)
.+| +.+-...|++.|+++. ..+++++++|+++++..++.+++++||.|++++|+|+++...+ +..|+
T Consensus 78 ~R~-~~Pt~~~Le~~lA~le--------g~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi 148 (427)
T PRK07049 78 SRF-NHPNSEIVEDRLAVYE--------GAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV 148 (427)
T ss_pred cCC-CCcCHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence 445 3445678999999985 2357888999999999999999999999999999999997664 56799
Q ss_pred EEEEecCcCCCCCccCHHhHhhhcc-----CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh---CCCEEEEEeccccc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLT-----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK---HPRLLVLSDEIYEH 272 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~-----~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~---~~~~~iI~Dd~~~~ 272 (470)
+++.++. + .|++.+++++. +++++|++++|+||||.+++.+++.+|++.|++ + +++||+||+|..
T Consensus 149 ~~v~~~~---~---~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~-~~~vvvDety~~ 221 (427)
T PRK07049 149 GAVGFAD---G---LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGH-RPIIACDNTLLG 221 (427)
T ss_pred EEEEEeC---C---CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccC-CCEEEEECCccc
Confidence 8777762 2 46777776653 478999999999999999999988888888654 7 899999999875
Q ss_pred cccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC
Q 012124 273 IIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351 (470)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~ 351 (470)
..+. .++ . .+..|++.||||.++ .+|+|+||+++++++++.+...+..++.+.+++.|.++...|+.
T Consensus 222 ~~~~----~pl---~--~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t--- 289 (427)
T PRK07049 222 PVFQ----KPL---E--HGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET--- 289 (427)
T ss_pred cccC----Ccc---c--cCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh---
Confidence 3321 122 1 245688999999998 69999999999999999999888888888899988877666642
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 352 GGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
+....++..++++.+.+.|++.|++
T Consensus 290 ----l~~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 290 ----LVLRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3334455588899999999988765
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=228.36 Aligned_cols=327 Identities=14% Similarity=0.150 Sum_probs=230.9
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCC--CC---CCC----CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 99 LAAGEPDFDTPVLIAEAGINAIREGF--TR---YTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 99 l~~g~~~~~~~~~~~~a~~~~~~~~~--~~---y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
|..+...+++|+.+.+++.+.+.... .+ |.. ..+..++|+.+++++ |.+ .+++|++|+|+++++..
T Consensus 3 ld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~al~~ 77 (376)
T TIGR01977 3 FDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAP-SSAHVVFTNNATTALNI 77 (376)
T ss_pred ccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCCHHHHHHH
Confidence 44555556678888988888876532 12 321 144567777777776 432 34589999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++.+++++||+|++..++|+.+.. ..+..|.+++.++.+. ++.+|++.++++++++++++++++|+||||..++
T Consensus 78 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~ 155 (376)
T TIGR01977 78 ALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVTGTILP 155 (376)
T ss_pred HHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCccccCC
Confidence 999999999999999999987653 3455699999999864 3458999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH-HHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACN 324 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~-~~~l~ 324 (470)
+++|.++|+++ |+++|+|++++.... ...+ .. .+-.+++.|++|.++.|. .+|.++..++. ++.+.
T Consensus 156 ---~~~i~~l~~~~-~~~livD~a~~~g~~----~~~~---~~-~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~ 222 (376)
T TIGR01977 156 ---IEEIGELAQEN-GIFFILDAAQTAGVI----PIDM---TE-LAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLK 222 (376)
T ss_pred ---HHHHHHHHHHc-CCEEEEEhhhccCcc----CCCc---hh-cCCCEEEecccccccCCC-CceEEEEcCCcCcCcee
Confidence 77889999999 999999999975221 1111 11 245588999999885332 35666544432 11111
Q ss_pred H----H------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC--
Q 012124 325 K----I------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-- 386 (470)
Q Consensus 325 ~----~------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-- 386 (470)
. . .+....+++.....++.++++.- .+...+.++++.++..+.+.+.|.+.+|+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 300 (376)
T TIGR01977 223 SGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFI--EKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADP 300 (376)
T ss_pred cCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc
Confidence 0 0 00111234444444555555431 12234667788888899999999888788776431
Q ss_pred --ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------CCCcEEEEeec--CHHHHHH
Q 012124 387 --GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------DDTCIRISYAA--SLTTLQA 452 (470)
Q Consensus 387 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----------~~~~iRls~~~--~~~~i~~ 452 (470)
.+..+++.+++. +..++.+.|.+++||.+.+|..+. ..+.||++++. ++++++.
T Consensus 301 ~~~~~~v~~~~~~~------------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~ 368 (376)
T TIGR01977 301 ANRVGVVSFTVEGI------------DSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEK 368 (376)
T ss_pred cccCCeEEEEECCC------------CHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHH
Confidence 233467777643 677888888776699999987653 24789999987 8999999
Q ss_pred HHHHHHH
Q 012124 453 AVERIKK 459 (470)
Q Consensus 453 ~l~~l~~ 459 (470)
++++|++
T Consensus 369 ~~~~l~~ 375 (376)
T TIGR01977 369 LLEALSE 375 (376)
T ss_pred HHHHHhh
Confidence 9999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=229.23 Aligned_cols=327 Identities=15% Similarity=0.173 Sum_probs=229.7
Q ss_pred cCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.... .. +|.+.+++.+++.+..... . .-..+....+++.+....+ .+.+++++++++|+.
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGseA~e 111 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS-R-AFHSDQLGPWYEKVAKLTG----KDMVLPMNTGAEAVE 111 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc-c-ccCCHHHHHHHHHHHhcCC----CCeEEEcCChHHHHH
Confidence 677899998886433 33 7899999999887532211 1 1122344555555554332 368999999999999
Q ss_pred HHHHHhcC---------CC-CeEEEcCCCCCChHH-HHHHcCCE------------EEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVCS---------PG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~~---------~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++.... +| ++|+..+-+|++... .+...+.. +..++. .|++.+++.++
T Consensus 112 ~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~ 184 (396)
T PRK04073 112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALKAAIT 184 (396)
T ss_pred HHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHHHhcc
Confidence 98887631 44 678888888887653 33333311 112221 27899999998
Q ss_pred CCceEEEEcCCCCCcccCCCH-HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPK-NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~-~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+++++|++++++||||..++. +.+++|.++|++| |+++|.||+|.++...+... .. ... +...-+.+|||.+|
T Consensus 185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~~-~~-~~~---~~~pdi~~~sK~lg 258 (396)
T PRK04073 185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEE-NVLFIADEIQTGLGRTGKLF-AC-DWD---NVTPDMYILGKALG 258 (396)
T ss_pred cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcCcHHH-Hh-hhc---CCCCCEEEeccccc
Confidence 889988888899999998875 4699999999999 99999999999865443211 11 111 11112446899999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCCee
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVKM 382 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~~ 382 (470)
.+|+|+||+++++++++.+.......+++.+++.|.++.+.|+.. ++ ..+.+..+++++++.+.|+++ +++..
T Consensus 259 ~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~--~~l~~~~~~~~~~l~~~L~~l~~~~i~~ 333 (396)
T PRK04073 259 GGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLPERSLELGEYFKEQLKEIDNPMIKE 333 (396)
T ss_pred CCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 778999999999999998865555567788999999999988741 11 234455566788888888775 23333
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~ 460 (470)
..+. |.+++++++. +..+++++|+++ ||.+.+. .+++||+++. .+++++++++++|+++
T Consensus 334 ~~~~-g~~~~~~~~~-------------~~~~~~~~l~~~-Gv~~~~~----~~~~iRi~p~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 334 VRGR-GLFIGVELNE-------------PARPYCEALKEE-GLLCKET----HETVIRFAPPLVITKEELDWAFEKIKAV 394 (396)
T ss_pred eecc-eEEEEEEecc-------------hHHHHHHHHHHC-CeEEecC----CCCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 3334 5668888763 567888888765 9998763 2468999964 4999999999999987
Q ss_pred H
Q 012124 461 L 461 (470)
Q Consensus 461 l 461 (470)
+
T Consensus 395 l 395 (396)
T PRK04073 395 L 395 (396)
T ss_pred h
Confidence 5
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=226.53 Aligned_cols=321 Identities=15% Similarity=0.142 Sum_probs=224.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcC-----cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc---CCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAG-----TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC---SPGD 179 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g-----~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~---~~gd 179 (470)
+|+.+.+++.+.+.. ...++.... ..+..+.+.+.+.+.+| +++++|++|+|+++++..++..+. .+||
T Consensus 11 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~ 87 (379)
T TIGR03402 11 VDPEVLEAMLPYFTE-YFGNPSSMHSFGGEVGKAVEEAREQVAKLLG--AEPDEIIFTSGGTESDNTAIKSALAAQPEKR 87 (379)
T ss_pred CCHHHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCC
Confidence 467888888887754 222211111 12233333344444456 467899999999999999888764 4568
Q ss_pred eEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012124 180 EVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256 (470)
Q Consensus 180 ~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~ 256 (470)
+|++...+|+++... ++..|++++.+|.+. ++.+|++.+++.++++++++++++++||||..+| +++|.++|
T Consensus 88 ~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~I~~l~ 162 (379)
T TIGR03402 88 HIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNETGTIFP---IEEIGEIA 162 (379)
T ss_pred eEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---HHHHHHHH
Confidence 999999888876543 445799999999864 3458999999999989999999999999999999 67899999
Q ss_pred HhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHH--HHH--H-Hhhhcc
Q 012124 257 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACN--K-IQSQFT 331 (470)
Q Consensus 257 ~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~--~l~--~-~~~~~~ 331 (470)
+++ |+++|+|++++. +.....+.. .+-.+++.|.+|.+|.+| +|+++..++..- .+. . ......
T Consensus 163 ~~~-g~~vivD~~~~~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~ 231 (379)
T TIGR03402 163 KER-GALFHTDAVQAV----GKIPIDLKE----MNIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRA 231 (379)
T ss_pred HHc-CCEEEEECcccc----cccccCccc----CCCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCC
Confidence 999 999999999974 222223322 233477888889776455 788876654310 000 0 000112
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCC-----ceEEEeeeccCccCCcccC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~ 405 (470)
.+++.....++.++++. ..+++++..+++++.++.+.+.|.+ ++++.+..+. +.+.+|+..+
T Consensus 232 gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 299 (379)
T TIGR03402 232 GTENVPGIVGLGKAAEL---ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI--------- 299 (379)
T ss_pred CCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---------
Confidence 34555556666666664 2456778888889999999999985 8888776532 2344454322
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++...|. ++||.+.+|..|.. .+.+|+|++. +++||+++++.|+++++++
T Consensus 300 -----~~~~~~~~l~-~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~ 373 (379)
T TIGR03402 300 -----EGEAILLLLD-MEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373 (379)
T ss_pred -----CHHHHHHhhc-cCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5677887764 55999999876632 2689999997 8999999999999998775
Q ss_pred C
Q 012124 465 R 465 (470)
Q Consensus 465 ~ 465 (470)
+
T Consensus 374 ~ 374 (379)
T TIGR03402 374 R 374 (379)
T ss_pred H
Confidence 4
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-26 Score=225.27 Aligned_cols=339 Identities=14% Similarity=0.162 Sum_probs=228.7
Q ss_pred EccCCC-CCCCChHHHHHHHHHHHHc-------CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 98 RLAAGE-PDFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 98 ~l~~g~-~~~~~~~~~~~a~~~~~~~-------~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
+|++++ ..+..++.+++++.+++.+ ....|+...+..+|++.+++++. .++.+++++|.+... .
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g-------~e~al~~~sG~~a~~-~ 73 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG-------TESAILYSDGASTTS-S 73 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC-------CCcEEEecCcHHHHH-H
Confidence 455554 4556678899999988876 23447777788899999999874 246788888877777 5
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-----------CCceEEEEcCCCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-----------EKSRLLILCSPSN 238 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-----------~~~~~i~l~~p~n 238 (470)
++.+++++||.|+++++.|+++...+...+++++.++.... -+++.+.+.++ +++++|++.+++|
T Consensus 74 ~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~ 149 (392)
T PLN03227 74 TVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYK 149 (392)
T ss_pred HHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcC
Confidence 67778999999999999999998888888888888776311 13444443442 2577888899999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc---cCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS---LPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~---~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
|+|.+.+ ++++.++|++| |+++|.||+|. +...+........ +.+..+..|++.|+||.++ ...||+++
T Consensus 150 ~~G~i~~---l~~i~~l~~~~-g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~ 221 (392)
T PLN03227 150 NTGTLAP---LKELVALKEEF-HYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVG 221 (392)
T ss_pred CCCcccC---HHHHHHHHHHc-CCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcEEec
Confidence 9999999 77899999999 99999999998 3322221111222 2222456799999999876 44599999
Q ss_pred CHHHHHHHHHHhhhccCCC--ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe----------ec
Q 012124 316 PKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK----------MS 383 (470)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~----------~~ 383 (470)
++++++.+........++. +++.+.++..++... .+ .+++++.++++.+++.+.|++. +.. +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~---~~-~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~ 296 (392)
T PLN03227 222 SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE---LA-GPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVIT 296 (392)
T ss_pred CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhc-CCccccccccccccC
Confidence 9998887765443334444 466677776666431 11 2456677788888888888752 221 11
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC-------CCCCCCcEEEEeec--CHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-------AFGDDTCIRISYAA--SLTTLQAAV 454 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~-------~f~~~~~iRls~~~--~~~~i~~~l 454 (470)
....+..+.+.+.+... ...........++++.+.++ ||.+.+.. .+.++..+|++++. +++++++++
T Consensus 297 ~~~~~~i~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~-Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~ 373 (392)
T PLN03227 297 SDPISPIIYLRLSDQEA--TRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLL 373 (392)
T ss_pred CCCCCCEEEEEeCCHHH--hhhhhhhhHHHHHHHHHHHC-CCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHH
Confidence 11223345566643100 00000000124777777766 88886421 23346789999987 999999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
+.|+++++++
T Consensus 374 ~~l~~~~~~~ 383 (392)
T PLN03227 374 TVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-25 Score=218.37 Aligned_cols=331 Identities=22% Similarity=0.243 Sum_probs=247.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcC--CC---CCCCCc----CcHHHHHHHHHHHHHHcCCCCC-CCcEEEecC
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG--FT---RYTPNA----GTLELRSAICHKLKEENGLSYT-PDQILVSNG 162 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~--~~---~y~~~~----g~~~lr~~ia~~l~~~~g~~~~-~~~i~it~g 162 (470)
+++++.|....-.. .|..+.+++.+..... .. .|.... -+.+.|+.+++++ | ++ .++|++|.|
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~----~--a~~~~eIvft~~ 92 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL----N--ADSSDEIVFTRG 92 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh----C--CCCCCeEEEeCC
Confidence 45667777666554 6888889888877531 11 222222 3355666666665 4 35 589999999
Q ss_pred hHHHHHHHHHHh---cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcC
Q 012124 163 AKQSILQAVLAV---CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 235 (470)
Q Consensus 163 ~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~ 235 (470)
++++|+++..++ +++||+|++.+-.|++.. .+.+..|++++.+|++++ ..++.|.+++.++++||++.++.
T Consensus 93 tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~--g~~~~~~~~~~i~~~Tklvais~ 170 (405)
T COG0520 93 TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDD--GLLDLDALEKLITPKTKLVALSH 170 (405)
T ss_pred hhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCC--CCcCHHHHHHhcCCCceEEEEEC
Confidence 999999999998 689999999999888644 455667999999999833 45899999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc-ccccccceeeEEE
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK-AFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK-~~~~~G~r~G~~~ 314 (470)
.+|.||...| +++|+++|+++ |+++++|.+++. +..+..+..+ +..+++.|..| .+| | -.+|.++
T Consensus 171 vSn~tG~~~p---v~~I~~la~~~-ga~v~VDaaq~~----~h~~idv~~l----~~Df~afsgHKwl~g-P-~GiGvLy 236 (405)
T COG0520 171 VSNVTGTVNP---VKEIAELAHEH-GALVLVDAAQAA----GHLPIDVQEL----GCDFLAFSGHKWLLG-P-TGIGVLY 236 (405)
T ss_pred ccccccccch---HHHHHHHHHHc-CCEEEEECcccc----CccCCCchhc----CCCEEEEcccccccC-C-CceEEEE
Confidence 9999999999 99999999999 999999999875 3334455444 44599999999 656 5 2389999
Q ss_pred cCHHHHHHHHH----------------------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 315 GPKHFVAACNK----------------------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 315 ~~~~~~~~l~~----------------------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
+++++++.+.- ........++.....++.++++.- .+...+++.++-++..+++.+
T Consensus 237 ~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~--~~ig~~~i~~~e~~L~~~~~~ 314 (405)
T COG0520 237 VRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYL--LEIGMEAIEAHERELTEYLLE 314 (405)
T ss_pred EchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 99999887611 011112223333344444555431 123367788888999999999
Q ss_pred HhccCCCCeecCCC----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEE
Q 012124 373 SFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIR 440 (470)
Q Consensus 373 ~L~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------~~~iR 440 (470)
.|+++|++++..+. .++ +.+.++.. .+.+++..|.++ ||.++.|..+.. +..+|
T Consensus 315 ~L~~~~~v~i~g~~~~~r~~~-vsF~v~~~------------~~~dv~~~L~~~-gI~vr~g~~ca~p~~~~~~~~~~iR 380 (405)
T COG0520 315 GLSELPGVEIYGPPDADRGGI-VSFNVKGI------------HPHDVATLLDEK-GIAVRAGHHCAQPLHRLLGVDATIR 380 (405)
T ss_pred HHhcCCCeEEecCCcccCceE-EEEEeCCC------------CHHHHHHHHHhC-CeEEEeccccccHHHHhcCCCCceE
Confidence 99999999988764 344 55577654 788999888766 799999976642 34699
Q ss_pred EEeec--CHHHHHHHHHHHHHHHH
Q 012124 441 ISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 441 ls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+|++. +++||+.+++.|+++.+
T Consensus 381 ~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 381 ASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred EEEeecCCHHHHHHHHHHHHHHhh
Confidence 99997 99999999999998764
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=223.35 Aligned_cols=332 Identities=13% Similarity=0.136 Sum_probs=240.0
Q ss_pred cCCCeEEccCCC--CCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~ 168 (470)
+|+.++|+.+|. ..+..++.+++++.+++.... .+ +..-..++++.+++.+.. .++ .+++++++++++.
T Consensus 27 dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~-~~-~~~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~ 98 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW-HS-PNLYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANE 98 (375)
T ss_pred CCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcC-cc-cCccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHH
Confidence 566789998774 344556779999999887532 23 233456788899987742 223 4688999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChH-HHHHHcCCEEEE------ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPVI------LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~------v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP 239 (470)
.+++... ..+++|++.+.+|++.. ..+...|.+... ++...... ..|++.+++.+++++.+|++..++|+
T Consensus 99 ~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dl~~l~~~l~~~~a~vi~e~v~~~ 177 (375)
T PRK04260 99 AAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAI-FNDLNSVKALVNKNTAAVMLELVQGE 177 (375)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeC-CCCHHHHHHhcCCCeEEEEECCeECC
Confidence 8887752 34678999899988744 333333322110 00000000 13889999988778888888989999
Q ss_pred cccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc-ccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 240 TGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 240 tG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
+|.. ++.+.++++.++|+++ |+++|+||+|.++...+..... ...+.+ + +.||||.++ +|+|+||+++++
T Consensus 178 ~G~~~~~~~~l~~~~~l~~~~-~~~~i~De~~~g~g~~g~~~~~~~~~~~p--d----i~t~sK~l~-~G~~ig~~~~~~ 249 (375)
T PRK04260 178 SGVLPADKDFVKALADYCQET-GILLIVDEVQTGMGRTGKLYAFEHYGIEP--D----IFTLAKGLA-NGVPVGAMLAKS 249 (375)
T ss_pred CCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccchhhhHhhCCCC--C----EEEeccccc-CCcceEEEEEcH
Confidence 9986 4578899999999999 9999999999876444321111 222332 2 458999998 999999999999
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
++.+.+.......+++.+++.+.++.++|+.... ++++++.++..+..++.+.+.+.+.+.+... +..|+++|++++.
T Consensus 250 ~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~ 327 (375)
T PRK04260 250 SLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTV-RGLGYMIGIETTA 327 (375)
T ss_pred HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE-eccceEEEEEecC
Confidence 9988876544556777899999999999976543 5778888888888888888888766433332 2378889999843
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++.++|.++ ||.+.|.. .+.+|++++. +++++++++++|+++
T Consensus 328 -------------~~~~~~~~l~~~-Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 328 -------------DLSQLVEAARDK-GLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred -------------cHHHHHHHHHhC-CCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 567888888765 99998752 4789999954 899999999999875
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=221.50 Aligned_cols=327 Identities=13% Similarity=0.124 Sum_probs=225.1
Q ss_pred CChHHHHHHHHHHHHcCC--------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCC
Q 012124 107 DTPVLIAEAGINAIREGF--------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 178 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~--------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~g 178 (470)
++++.+.+++.+...... ..+.......++++.+++++ |. +++++++|+++++..++.+++++|
T Consensus 31 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g~----~~~~~~~g~t~a~~~al~~l~~~g 102 (387)
T PRK09331 31 ILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----GM----DEARVTHGAREGKFAVMHSLCKKG 102 (387)
T ss_pred CCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhcCCC
Confidence 447888888888774311 11111234577788888775 42 468899999999999999999999
Q ss_pred CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-------CceEEEEcCCCCCcccCCCHHHHHH
Q 012124 179 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 179 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-------~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
|+|+++.++|.+....++..|++++.++.+.+.++.+|++.+++++++ ++++|++++|+||||...+ +++
T Consensus 103 d~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~ 179 (387)
T PRK09331 103 DYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKK 179 (387)
T ss_pred CEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHH
Confidence 999999999988888889999999999984334566999999998853 6899999999999999888 889
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc-
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF- 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~- 330 (470)
|+++|+++ |+++|+|++|+... .+.+... .+..+++.|++|+++ .+.++||+++++++++.+.+....+
T Consensus 180 I~~la~~~-g~~livD~a~~~g~----~~~~~~~----~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~i~~~~~~~~~~~ 249 (387)
T PRK09331 180 VAKVAHEY-GIPFLLNGAYTVGR----MPVDGKK----LGADFIVGSGHKSMA-ASAPSGVLATTEEYADKVFRTSRKFG 249 (387)
T ss_pred HHHHHHHc-CCEEEEECCcccCC----cCCCHHH----cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhcccccCCCc
Confidence 99999999 99999999998521 1122222 245688999999997 6668999999999888775542211
Q ss_pred -------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC--CCceEEEeeeccCccCC
Q 012124 331 -------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGS 401 (470)
Q Consensus 331 -------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~~~g~~~~~~~~~~~~~ 401 (470)
..+.++....++...++. ..+..+ ..++..++.+++.+.|++++|+++.. +...-++.++.|... .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~aal~~---~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~-~ 324 (387)
T PRK09331 250 VKEVELLGCTLRGAPLVTLMASFPH---VVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFD-E 324 (387)
T ss_pred ccceeeeceecCchHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchh-H
Confidence 111222222333333332 123333 33445667778899999998888763 222223445555210 0
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
... ....+..++.+.|.++ ||...+. +....+|+.... ++++++.+++.|++++++..
T Consensus 325 ~~~--~~~~~~~~~~~~L~~~-gI~~~~~---~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~~ 383 (387)
T PRK09331 325 IAK--KHKRRGFFLYEELKKR-GIHGIKP---GATKEFKLSTYGLTWEQVEYVADAFKEIAEKYG 383 (387)
T ss_pred Hhh--hccccchhHHHHHHHc-CceEEcc---CCceEEEEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 0001345688888655 9974332 123456777655 99999999999999988754
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=219.78 Aligned_cols=284 Identities=15% Similarity=0.198 Sum_probs=203.1
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 205 (470)
.+-..+|++.++++. |. +..++++|+++++.+++ .++++||+|++++|+|++... .++..|++++.+
T Consensus 51 ~pt~~~le~~la~l~----g~----~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v 121 (366)
T PRK08247 51 NPTRGVLEQAIADLE----GG----DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYV 121 (366)
T ss_pred CchHHHHHHHHHHHh----CC----CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEE
Confidence 344677888888875 32 23577888889999776 577899999999999998544 445689999888
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+. .|++.+++++++++++|++++|+||+|. ..++++|+++|+++ |++||+|++|....+. .++
T Consensus 122 d~-------~d~~~l~~~i~~~tklv~le~P~NP~~~---~~dl~~I~~la~~~-g~~lIvD~t~~~~~~~----~p~-- 184 (366)
T PRK08247 122 NT-------ASLKAIEQAITPNTKAIFIETPTNPLMQ---ETDIAAIAKIAKKH-GLLLIVDNTFYTPVLQ----RPL-- 184 (366)
T ss_pred CC-------CCHHHHHHhcccCceEEEEECCCCCCCc---HHHHHHHHHHHHHc-CCEEEEECCCcccccc----Cch--
Confidence 75 3889999999889999999999999754 55699999999999 9999999999532211 111
Q ss_pred cCCCCCceEEEeccCccccc-ccceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
..+..|+++|+||.++- ++++.||++++ .++.+.+...+.....+.+++.|.++...++. +....+++
T Consensus 185 ---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-------l~~r~~~~ 254 (366)
T PRK08247 185 ---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-------LALRMRQH 254 (366)
T ss_pred ---hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-------HHHHHHHH
Confidence 13566999999999952 35689999987 67888888777777777888877766665542 33444466
Q ss_pred HHHHHHHHHHhccCCCCe-ecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHH---------HHHcCCEEEECCCC
Q 012124 364 RERRDFLVKSFGELEGVK-MSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY---------LLDKAQVALVPGDA 432 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~-~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------L~~~~gI~v~pg~~ 432 (470)
+++++.+.+.|++.|++. +..| .+|+|.| .+...- ....|.+. |.....+.+.|+..
T Consensus 255 ~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~-----------~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~ 322 (366)
T PRK08247 255 EENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEE-----------WVNPFLKSLKLITFAESLGGVESFITYPATQ 322 (366)
T ss_pred HHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHH-----------HHHHHHHcCCcceEccCCCCCceEEECCccc
Confidence 899999999999988876 4444 7899877 563210 12223332 22223466667755
Q ss_pred CCC-------------CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 433 FGD-------------DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 433 f~~-------------~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+.. ++.+|||++.. +.++.++.|++++++
T Consensus 323 ~~~~~~~~~r~~~gi~~~~~R~svGlE--~~~dl~~dl~~al~~ 364 (366)
T PRK08247 323 THADIPEEIRIANGVCNRLLRFSVGIE--NVEDLIADLKQAFKQ 364 (366)
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 421 25799999973 345556666666654
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-25 Score=216.42 Aligned_cols=323 Identities=15% Similarity=0.137 Sum_probs=229.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC----CCCeEEE
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDEVII 183 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~----~gd~Vlv 183 (470)
+.+.+.+++.+.+...........+..++.+.+.+.+.+.+|. +++++++++|+++++..++.++.+ +||+|++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~ 109 (371)
T PRK13520 32 PHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL--PDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVV 109 (371)
T ss_pred chHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC--CCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEe
Confidence 4577778888877653221111235566666777777776774 456789999999999988877654 5799999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEE
Q 012124 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263 (470)
Q Consensus 184 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~ 263 (470)
.+++|..+...++..|++++.+|.+. ++.+|++.|++++++++++++++.++|+||...+ +++|.++|+++ |++
T Consensus 110 ~~~~h~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~-g~~ 183 (371)
T PRK13520 110 PESAHFSFDKAADMLGVELRRAPLDD--DYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIALEN-GIF 183 (371)
T ss_pred cCcchHHHHHHHHHcCceEEEecCCC--CCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHc-CCC
Confidence 99999999888899999999999863 3458999999999888888887888999999999 88899999999 999
Q ss_pred EEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhc--------cCCC
Q 012124 264 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF--------TSGA 334 (470)
Q Consensus 264 iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~--------~~~~ 334 (470)
+++|++|+.+............+.. .+-..+..|.+|.. ++|.++|+++. ++++++.+....... ....
T Consensus 184 livD~a~~~~~~~~~~~~~~~~~~~-~~vd~~~~s~~K~~-~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~ 261 (371)
T PRK13520 184 LHVDAAFGGFVIPFLDDPPNFDFSL-PGVDSITIDPHKMG-LAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTR 261 (371)
T ss_pred EEEEecchhHHHHhhcCCCCccccC-CCCceEEECCcccc-CccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeec
Confidence 9999999865421101111111111 12334556777854 57788988774 666777654211111 1112
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
+.....++..+++.- .+...++.+++..++++++.+.|+++ |++ +..+..++ +.+.++ +..
T Consensus 262 ~~~~~~~~~~al~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-v~~~~~--------------~~~ 323 (371)
T PRK13520 262 SGAGVAATYAVMKYL--GREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNI-VAFDDP--------------NPD 323 (371)
T ss_pred cChHHHHHHHHHhhh--cHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceE-EEEecC--------------CHH
Confidence 334455555556531 14456778888889999999999888 887 55555565 555664 456
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
++.+.|.++ ||.+.++. .++++|+|++. ++++++.+++.|+++++
T Consensus 324 ~v~~~L~~~-gi~v~~~~---~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 324 EVREKLRER-GWRVSVTR---CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHC-CceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 888888766 89887743 34689999874 89999999999998765
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=222.31 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=173.3
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH-----HHcCCEEEE
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPVI 204 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~g~~~~~ 204 (470)
.+-..+|++.++++. | .+.+++++|+++++..++.+++++||+|++++|.|+++...+ +..|++++.
T Consensus 75 ~Pt~~~LE~~lA~l~----g----~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~ 146 (418)
T PLN02242 75 NPTVLNLGRQMAALE----G----TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTF 146 (418)
T ss_pred ChhHHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEE
Confidence 445567777777775 3 357789999999999999999999999999999998887654 347888777
Q ss_pred ecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc
Q 012124 205 LPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
++. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++ +++||+|++|..+.+..
T Consensus 147 ~d~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-gi~livDea~~~~~~~~------ 209 (418)
T PLN02242 147 VDI-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEK-GVTVVVDNTFAPMVLSP------ 209 (418)
T ss_pred cCC-------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHh-CCEEEEECCCCccCCCH------
Confidence 764 389999999987 5999999999999999997 88999999999 99999999998755421
Q ss_pred cccCCCCCceEEEeccCcccccccce-eeEEEcCHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r-~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
.. .+..|++.||||.++.+|.+ .||+++++++++.+...+.. ...+++...|.+...+... +.+..+.
T Consensus 210 ~~----~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l-----~tl~~r~ 280 (418)
T PLN02242 210 AR----LGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERL-----PHLSLRM 280 (418)
T ss_pred HH----cCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC-----CcHHHHH
Confidence 11 13569999999999878877 59999999999988876542 3345566677777666543 2445566
Q ss_pred HHHHHHHHHHHHHhccCCCCeec
Q 012124 361 KAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
++++++++.+.+.|+++ ++++.
T Consensus 281 ~~~~~~a~~la~~L~~~-~~~V~ 302 (418)
T PLN02242 281 KEHCRRAMEYAKRMKEL-GLKVI 302 (418)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEE
Confidence 78899999999999987 45554
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=219.71 Aligned_cols=336 Identities=14% Similarity=0.095 Sum_probs=229.9
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+..+ + ......+....+++.+.+.. ..+.++++++++++.+
T Consensus 13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~-~~~~~~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e 86 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH-V-SNVYHTIPQVELAKRLVASS----FADRVFFCNSGTEANE 86 (382)
T ss_pred CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC-c-cccccCHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHH
Confidence 5778899988853 3333 78999999999876321 1 11122445566777765432 2369999999999999
Q ss_pred HHHHHhc---C------C------CCeEEEcCCCCCChHHHHHHcCCEE-EE---ecCcCCCCC--ccCHHhHhhhcc-C
Q 012124 169 QAVLAVC---S------P------GDEVIIPAPFWVSYPEMARIADATP-VI---LPTRISENF--LLDPKVLESKLT-E 226 (470)
Q Consensus 169 ~~~~~l~---~------~------gd~Vlv~~p~y~~~~~~~~~~g~~~-~~---v~~~~~~~~--~~d~~~l~~~l~-~ 226 (470)
.+++... . + ..+|+....+|++............ .. .|..++.-+ ..|++.+++.+. .
T Consensus 87 ~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 166 (382)
T PLN00144 87 AAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG 166 (382)
T ss_pred HHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC
Confidence 9988642 1 0 2468888999998775444322211 00 111000000 027899998885 4
Q ss_pred CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc-ccccCCCCCceEEEeccCcccc
Q 012124 227 KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++|++...+||.|. .++.+.+++|.++|++| |+++|+||+|.+|...+..... +..+.++ +.||||.++
T Consensus 167 ~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~-g~llI~DEv~tg~gr~g~~~~~~~~~~~PD------i~t~sK~l~ 239 (382)
T PLN00144 167 KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEA-GALLVFDEVQCGLGRTGYLWAHEAYGVEPD------IMTLAKPLA 239 (382)
T ss_pred CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchHhhhhhcCCCCC------EEEeccccc
Confidence 6777776444999443 23455599999999999 9999999999987665532221 3445442 888999998
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVA---ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV- 380 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~- 380 (470)
+|+|+||+++++++++.+.......+++.+++.+.++.+ .++.+.+ .++++++.+.+ ++.+.+.+.+.|.+
T Consensus 240 -~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l---~~~l~~~~~~~~~~~ 314 (382)
T PLN00144 240 -GGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYL---RELLRRKLGGNPHVK 314 (382)
T ss_pred -CCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHH---HHHHHHHHhhCCCce
Confidence 999999999999999888655556678899999999984 4454433 45555555555 34445555555433
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
.+. ..|+++|+++.. +...+++.++++ ||.+.|+. ..+.+|++++. +++++++++++|+
T Consensus 315 ~vr--g~G~~~~l~l~~-------------~~~~~~~~~~~~-Gv~i~~~~---~~~~lrl~p~~~~~~~~i~~~~~~l~ 375 (382)
T PLN00144 315 EVR--GVGLLVGIQLDV-------------PAGPLVDACRDS-GLLVLTAG---KGDVVRLVPPLVISEAELEQAVEILA 375 (382)
T ss_pred eee--cCceEEEEEecC-------------ccHHHHHHHHHC-CeEEeecC---CCCEEEEeCCCccCHHHHHHHHHHHH
Confidence 332 378999999832 456788877765 99999873 24789999886 8899999999999
Q ss_pred HHHHhh
Q 012124 459 KGLLTL 464 (470)
Q Consensus 459 ~~l~~~ 464 (470)
+++.++
T Consensus 376 ~~l~~~ 381 (382)
T PLN00144 376 DCLPAL 381 (382)
T ss_pred HHHHhc
Confidence 998754
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=221.71 Aligned_cols=341 Identities=14% Similarity=0.157 Sum_probs=234.8
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+... ++. ....+....+++.+.+..+ .+++++++++++|++
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sGseA~e 110 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWH-TGN-GYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccc-ccC-ccCCHHHHHHHHHHHhhCC----CCeEEEcCCcHHHHH
Confidence 5678899988642 2333 78999999999865211 111 1123344556666654332 369999999999999
Q ss_pred HHHHHhc--------CCCCeEEEcCCCCCChHHHHHHcCCEEEE----ecCcC--CCCCccCHHhHhhhccCCceEEEEc
Q 012124 169 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADATPVI----LPTRI--SENFLLDPKVLESKLTEKSRLLILC 234 (470)
Q Consensus 169 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~--~~~~~~d~~~l~~~l~~~~~~i~l~ 234 (470)
.+++... ...+.|+..+.+|++........+..... .++.+ ..-...|++.+++.+++++++|++
T Consensus 111 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavii- 189 (406)
T PRK12381 111 AALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV- 189 (406)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEE-
Confidence 9998752 13478999999999987544332221100 01100 000114889999999877887777
Q ss_pred CCCCCcccCC--CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccccccceee
Q 012124 235 SPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 235 ~p~nPtG~~~--s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
.|.|++|-++ +.+.+++|.++|++| |+++|+||+|.++.+.+.... ....+.+ + +.||||.++ +|+|+|
T Consensus 190 EPv~~~gg~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~gr~G~~~~~~~~~v~p--D----i~t~sK~l~-gG~~ig 261 (406)
T PRK12381 190 EPIQGEGGVIPADKAFLQGLRELCDRH-NALLIFDEVQTGVGRTGELYAYMHYGVTP--D----VLTTAKALG-GGFPIG 261 (406)
T ss_pred eCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEcchhhCCCCCcchhhhHhhCCCC--C----EEEehhhhh-CCCceE
Confidence 6888888654 799999999999999 999999999988765553211 0112222 2 468999998 999999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC-CCe--ecCCCce
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GVK--MSEPQGA 388 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~--~~~~~~g 388 (470)
|+++++++++.+.......+++.+++.+.++.+.|+.- . ..++++.++++.+++.+.|+++. ... ......|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G 336 (406)
T PRK12381 262 AMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLG 336 (406)
T ss_pred EEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCe
Confidence 99999999988876555566788999999999987641 1 23567778888888888887651 121 1223457
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++|+.+++... .....+.+.|.++ ||.+.+.. ++.+|++++. +++++++++++|+++++++..
T Consensus 337 l~~~~~l~~~~~---------~~~~~~~~~l~~~-Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 402 (406)
T PRK12381 337 LLIGCVLNAEYA---------GKAKQISQEAAKA-GVMVLIAG----PNVVRFAPALNISEEEITTGLDRFARACERFVS 402 (406)
T ss_pred EEEEEEecCchh---------hHHHHHHHHHHHC-CcEEeeCC----CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 888888864210 0345677776655 99987632 4689998874 999999999999999987643
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=217.39 Aligned_cols=305 Identities=19% Similarity=0.203 Sum_probs=218.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--------
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-------- 179 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd-------- 179 (470)
+|+++++++.+...+ |. +..++++++++++.+.+|. +++++|+|+++++.+++.+++++||
T Consensus 25 ~~~~v~~a~~~~~~~----~~---~~~~~~~~~~~~~a~~~g~----~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~ 93 (363)
T TIGR01437 25 VSDEVADAQKRGAQN----YF---EIKELVNKTGEYIANLLGV----EDAVIVSSASAGIAQSVAAVITRGNRYLVENLH 93 (363)
T ss_pred CCHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHhhCC----CeEEEEcCHHHHHHHHHHHHhcCCCcchhhccc
Confidence 588999999988643 32 4678999999999887774 4789999999999999999999998
Q ss_pred -------eEEEcCCCCCCh----HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEE-EcCCCCCcccCCCHH
Q 012124 180 -------EVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI-LCSPSNPTGSVYPKN 247 (470)
Q Consensus 180 -------~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~-l~~p~nPtG~~~s~~ 247 (470)
+|+++.|.|..+ ...+...|++++.++.+ +.+|++.+++++++++++++ +++|+||+|.+.+
T Consensus 94 ~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-- 167 (363)
T TIGR01437 94 DSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-- 167 (363)
T ss_pred ccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC--
Confidence 999999888766 46778899999999863 34899999999999999776 5788999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
+++|+++|++| |+++|+|++|+. . ...+..+ +..+++.|++|.+ +|++.|++++++++++.+....
T Consensus 168 -~~~i~~~a~~~-gi~vivD~a~~~---~---~~~~~~~----g~D~~~~S~~K~l--~gp~~G~l~~~~~~i~~~~~~~ 233 (363)
T TIGR01437 168 -VEDAAQVAQEH-NLPLIVDAAAEE---D---LQKYYRL----GADLVIYSGAKAI--EGPTSGLVLGKKKYIEWVKLQS 233 (363)
T ss_pred -HHHHHHHHHHc-CCeEEEECCCCC---c---hHHHHHc----CCCEEEEeCCccc--CCCceEEEEEcHHHHHHHHhcc
Confidence 67889999999 999999999972 1 1111122 2357889999976 5778999999988887764322
Q ss_pred hhcc-----CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC--ceEE---EeeeccC
Q 012124 328 SQFT-----SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFY---LFIDFST 397 (470)
Q Consensus 328 ~~~~-----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g~~---~~~~~~~ 397 (470)
.... ...+..++.++...+.. +..+..+.+.++++.+.+.|++++|+.+..+. .+.. .-+.+..
T Consensus 234 ~~~~~~~~~~~~~~~gl~aAl~~~~~------~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~ 307 (363)
T TIGR01437 234 KGIGRAMKVGKENILGLTAALEQYLS------TGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDE 307 (363)
T ss_pred CCCcceeccCHHHHHHHHHHHHHHHc------cCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEec
Confidence 1110 01112233333333321 12233334455677899999999898775321 1111 1122221
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCC--EEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQ--VALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~g--I~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
. +...+..++.+.|.++ + |.+++ .|...+.+|+++.. +++|++.++++|+++
T Consensus 308 ~--------~~g~~~~~l~~~L~~~-~~~I~~r~--~~~~~~~~~l~~~~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 308 S--------ELGMTAADVVQALRQG-EPAIYTRG--YKANEGIIEIDPRSVTGGQLDIIVERIREI 362 (363)
T ss_pred c--------CCCCCHHHHHHHHhcC-CCCEEEee--eeecCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence 0 0012778999988653 5 66665 46677899999988 899999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=221.62 Aligned_cols=326 Identities=17% Similarity=0.197 Sum_probs=221.8
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHH--cCCCCCC---C------CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIR--EGFTRYT---P------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~--~~~~~y~---~------~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+.|..+... ++|+.+.+++.+.+. ....... . .....++|+.+++++ | +++++|++++|+++
T Consensus 5 iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----g--~~~~~v~~~~g~t~ 77 (404)
T PRK14012 5 IYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI----G--ADPREIVFTSGATE 77 (404)
T ss_pred EEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc----C--cCcCeEEEeCCHHH
Confidence 455555554 457778888888765 2111110 0 112344556666554 5 46788999999999
Q ss_pred HHHHHHHHhc----CCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCC
Q 012124 166 SILQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 238 (470)
Q Consensus 166 al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~n 238 (470)
++.+++.++. ++||+|++++++|+.....+ +..|++++.++++. ++.+|++.++++++++++++++++++|
T Consensus 78 al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~n 155 (404)
T PRK14012 78 SDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDTILVSIMHVNN 155 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEECcCC
Confidence 9999887763 78999999999998876544 34699999999864 345899999999999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+++ +++|.++|+++ +++||+|++++. +.....+... +-.+++.|++|.+| |+ ++|+++++++
T Consensus 156 ~tG~~~~---~~~I~~la~~~-g~~vivD~a~~~----g~~~~~~~~~----~~D~~~~s~~K~~g-p~-g~G~l~~~~~ 221 (404)
T PRK14012 156 EIGVIQD---IAAIGEICRER-GIIFHVDAAQSV----GKVPIDLSKL----KVDLMSFSAHKIYG-PK-GIGALYVRRK 221 (404)
T ss_pred Cccchhh---HHHHHHHHHHc-CCEEEEEcchhc----CCcccCcccC----CCCEEEEehhhccC-CC-ceEEEEEecC
Confidence 9999999 78999999999 999999999874 2222222222 33477789999887 54 6899888765
Q ss_pred HHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-----C
Q 012124 319 FVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-----Q 386 (470)
Q Consensus 319 ~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~ 386 (470)
....+... ......+.+.....++.+++.. ......+..++.++.++++.+.|++++++.+..+ .
T Consensus 222 ~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~ 298 (404)
T PRK14012 222 PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARI---AKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVP 298 (404)
T ss_pred CCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC
Confidence 43322211 0011112233333333344443 1334555677788888899999988877765422 1
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA-- 445 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~-- 445 (470)
..+++|+.+. +..++...| + ++.+..|..|.. .+.+|++++.
T Consensus 299 ~~~~~~~~~~--------------~~~~~~~~l--~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~ 361 (404)
T PRK14012 299 GNLNVSFNYV--------------EGESLIMAL--K-DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 361 (404)
T ss_pred CEEEEEEeCc--------------CHHHHHHhC--C-CeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCC
Confidence 2344555543 334566655 2 677777755532 2679999997
Q ss_pred CHHHHHHHHHHHHHHHHhhC
Q 012124 446 SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~l~~~~ 465 (470)
++++++.+++.|+++++.++
T Consensus 362 t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 362 TEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887664
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=220.55 Aligned_cols=328 Identities=15% Similarity=0.189 Sum_probs=226.1
Q ss_pred cCCCeEEccCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|...... ++.+.+++.+++.+...... .-..+....+++.+.+..| .+++++++++++|+.
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~A~e 112 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSR--AFRNDQLAPLYEELAALTG----SHKVLPMNSGAEAVE 112 (401)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc--ccCCHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHH
Confidence 56788999888654444 78899999999876322110 0012333444444443333 358999999999999
Q ss_pred HHHHHhcC---------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVCS---------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++.+.. +| ++|++.+-+|++....+...+. ++..++. .|++.+++.+.
T Consensus 113 ~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~ 185 (401)
T PRK00854 113 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEALEAAIT 185 (401)
T ss_pred HHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 99998742 24 6888888888876544333221 2222321 48899999998
Q ss_pred CCceEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCccc
Q 012124 226 EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
+++++|++++|+||+|.+++ .+.+++|.++|++| |+++|+||+|..+.+.+.... ...... .+ +.+ ++|.+
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~-gi~lI~DEv~~g~g~~g~~~~~~~~g~~--~D--~~~--~~K~l 258 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN-NVTLILDEIQTGLGRTGKLLAEEHEGIE--AD--VTL--IGKAL 258 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCchHhHHhhcCCC--CC--EEE--ecccc
Confidence 89999999999999999987 45699999999999 999999999987654432110 011111 12 222 47999
Q ss_pred cccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C
Q 012124 304 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--V 380 (470)
Q Consensus 304 ~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~ 380 (470)
+ .| +|+||+++++++++.+.......+++.+++.|.++.+.|+. .++ ....+.++++.+++.+.|+++.. +
T Consensus 259 ~-gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~---l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~ 332 (401)
T PRK00854 259 S-GGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKV---LTE--EGMIENAAEMGAYFLEGLRSIRSNIV 332 (401)
T ss_pred c-CCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHH---HHH--cCHHHHHHHHHHHHHHHHHhhccCce
Confidence 7 56 69999999999998876544555667899999999998874 121 23567778888888888887621 1
Q ss_pred eecCCCceEEEeeec-cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDF-STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERI 457 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l 457 (470)
....+.+.++.+ .+ ++. .+..++++.|+++ ||.+.+. ..+++|++++ .++++|++++++|
T Consensus 333 ~~~~g~g~~~~i-~~~~~~-----------~~~~~~~~~L~~~-GV~v~~~----~~~~lR~~p~~~~t~e~i~~~i~~l 395 (401)
T PRK00854 333 REVRGRGLMLAV-ELEPEA-----------GGARQYCEALKER-GLLAKDT----HDHTIRLAPPLVITREQVDWALEQI 395 (401)
T ss_pred EEEeccceEEEE-EEecCc-----------hhHHHHHHHHHHC-CeEEecC----CCCEEEEeCCcccCHHHHHHHHHHH
Confidence 112334445443 43 321 1467888988876 9998753 2479999975 4999999999999
Q ss_pred HHHHH
Q 012124 458 KKGLL 462 (470)
Q Consensus 458 ~~~l~ 462 (470)
++++.
T Consensus 396 ~~~l~ 400 (401)
T PRK00854 396 AKVLA 400 (401)
T ss_pred HHHhh
Confidence 98864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=218.27 Aligned_cols=340 Identities=16% Similarity=0.108 Sum_probs=223.3
Q ss_pred cCCCeEEccCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||..|..... .++.+.+++.+++....... .. -..+..+.+.+.+.+..+ .+.+++++++++|..
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~----~~~~~~~~SGs~A~e 102 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTS-RA-FYNDVLGLAEKYITDLFG----YDKVLPMNSGAEAGE 102 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccc-cc-ccCHHHHHHHHHHHhCCC----CCEEEEeCCcHHHHH
Confidence 5678899988865443 37889999999886532211 11 112344555555554333 268899999999999
Q ss_pred HHHHHhcC----------CCCeEEEcCCCCCChHHHHH-HcCCEEEE---ecCcCC--CCCccCHHhHhhhcc-CCceEE
Q 012124 169 QAVLAVCS----------PGDEVIIPAPFWVSYPEMAR-IADATPVI---LPTRIS--ENFLLDPKVLESKLT-EKSRLL 231 (470)
Q Consensus 169 ~~~~~l~~----------~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~---v~~~~~--~~~~~d~~~l~~~l~-~~~~~i 231 (470)
.+++.+.. .++.|++.+-+|++...... ..+..... .+.... .-...|++.+++.++ +++++|
T Consensus 103 ~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v 182 (400)
T PTZ00125 103 TALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAF 182 (400)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEE
Confidence 99987631 34788888888888664332 22211110 010000 000138999999996 678899
Q ss_pred EEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCccccccc-c
Q 012124 232 ILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTG-W 308 (470)
Q Consensus 232 ~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G-~ 308 (470)
++.+++||||..++ .+.+++|.++|++| |+++|+||+|..+.+.+.... ......+ + +.+|||.++ .| +
T Consensus 183 ~~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~Dev~~g~g~~G~~~~~~~~~~~p--d----~~~~sK~l~-~g~~ 254 (400)
T PTZ00125 183 IVEPIQGEAGVIVPDDGYLKQVYELCKKY-NVLLIVDEIQTGLGRTGKLLAHDHEGVKP--D----IVLLGKALS-GGLY 254 (400)
T ss_pred EEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhhHHHhcCCCC--C----EEEEccccc-CCCc
Confidence 88888999999886 56699999999999 999999999987655443111 1111211 1 335789997 56 4
Q ss_pred eeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCCeecC
Q 012124 309 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSE 384 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~ 384 (470)
|+||+++++++++.+.......+++.+++.|.++.+.|+.-.. +. ..+..+++.+.+.+.|++ .+.+....
T Consensus 255 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~-~~----~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 329 (400)
T PTZ00125 255 PISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKE-EK----LAENAQRLGEVFRDGLKELLKKSPWVKEIR 329 (400)
T ss_pred CcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-cC----HHHHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 9999999999998876555555677889999888777653100 11 222333334444444433 22223233
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l~ 462 (470)
+ .|.++|+.++... ..+..++++.|+++ ||.+.|+. .+++|++++ .+++++++++++|+++++
T Consensus 330 ~-~g~~~~v~~~~~~---------~~~~~~~~~~l~~~-Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~ 394 (400)
T PTZ00125 330 G-KGLLNAIVFDHSD---------GVNAWDLCLKLKEN-GLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLK 394 (400)
T ss_pred c-ccEEEEEEEccCc---------chHHHHHHHHHHHC-CeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 3 5666778776410 01467788888765 99998863 578999975 499999999999999998
Q ss_pred hhC
Q 012124 463 TLR 465 (470)
Q Consensus 463 ~~~ 465 (470)
++.
T Consensus 395 ~~~ 397 (400)
T PTZ00125 395 SFD 397 (400)
T ss_pred HHh
Confidence 764
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-25 Score=218.22 Aligned_cols=328 Identities=17% Similarity=0.184 Sum_probs=226.5
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCC---CC------CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRY---TP------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y---~~------~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.|..+.+. +.|+.+.+++.+.+......- .. .....++|+.++++ +| +++++|++|+|+++++
T Consensus 5 ~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 5 IYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAEL----IG--ADSREIVFTSGATESN 77 (402)
T ss_pred EEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEeCCHHHHH
Confidence 555555554 357778888887765321110 00 11234455666655 45 4678999999999999
Q ss_pred HHHHHHhc----CCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 168 LQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 168 ~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
.+++..+. ++||+|++..+.|+.+...+ +..|++++.++++. ++.+|++.++++++++++++++++++|||
T Consensus 78 ~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~v~~~~n~t 155 (402)
T TIGR02006 78 NLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDTILVSIMHVNNEI 155 (402)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEECCCcCc
Confidence 98887653 68999999999998866543 45699999999864 34589999999998889999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|..++ +++|.++|+++ |+++++|++++.. ..+..+.. .+-.+++.|++|.+|.+| +|+++..++..
T Consensus 156 G~~~~---~~~I~~l~~~~-g~~livD~a~a~g----~~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~ 221 (402)
T TIGR02006 156 GVIQD---IAAIGEICRER-KVFFHVDAAQSVG----KIPINVNE----LKVDLMSISGHKIYGPKG--IGALYVRRKPR 221 (402)
T ss_pred eeccc---HHHHHHHHHHc-CCEEEEEcchhcC----CcccCccc----cCCCEEEEehhhhcCCCc--eEEEEEccCCC
Confidence 99998 78999999999 9999999998742 11112221 244588888999887335 78888776543
Q ss_pred HHHHHHh-------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEE
Q 012124 321 AACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFY 390 (470)
Q Consensus 321 ~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~ 390 (470)
..+.... ......++.....++..+++. ..+.++...+++++.++.+.+.|++++++.+..+.. ...
T Consensus 222 ~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~ 298 (402)
T TIGR02006 222 VRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGN 298 (402)
T ss_pred CCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCe
Confidence 3222111 112233455555555566664 245677778889999999999998888876653211 111
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTT 449 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~ 449 (470)
+.+.++.. +..++...| + +|.+..|..+.. .+++|+|++. +++|
T Consensus 299 ~~v~f~~~------------~~~~~~~~l--~-~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~ed 363 (402)
T TIGR02006 299 LNVSFNYV------------EGESLIMAL--K-DLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEE 363 (402)
T ss_pred EEEEEeCc------------CHHHHHHhc--C-CEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHH
Confidence 12333321 445565544 3 788888766532 2689999997 8999
Q ss_pred HHHHHHHHHHHHHhhC
Q 012124 450 LQAAVERIKKGLLTLR 465 (470)
Q Consensus 450 i~~~l~~l~~~l~~~~ 465 (470)
++.+++.|+++++.++
T Consensus 364 id~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 364 IDYAVKLVKSAIDKLR 379 (402)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=214.33 Aligned_cols=336 Identities=15% Similarity=0.097 Sum_probs=222.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCCC---CcC---cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTP---NAG---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~~---~~g---~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
++.++|..++.. +|+.+++++.+.+.... .+++. ..| ...+.+...+.+++.+|. +.++|++++| +++
T Consensus 25 ~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~i~~~sg-t~a 99 (416)
T PRK00011 25 EEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYANVQPHSG-SQA 99 (416)
T ss_pred hcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceeeecCCc-hHH
Confidence 566899988766 57888888876653211 11110 112 122222233456666674 4456766665 568
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH-----HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCc
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 240 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPt 240 (470)
+..++.++++|||+|+++.|+|.++.. .+...|++++.++++.+ ++.+|++.+++++++ ++++++++.++||
T Consensus 100 l~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~k~v~~~~~~~~- 177 (416)
T PRK00011 100 NAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEE-TGLIDYDEVEKLALEHKPKLIIAGASAYS- 177 (416)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcc-cCCcCHHHHHHHHHhcCCCEEEECCCcCC-
Confidence 999999999999999999999976532 12345678888888643 366999999999964 7898888765554
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 318 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~ 318 (470)
...+ +++|.++|+++ |+++|+|++|.. +.+.+.....+. ...++++||||.+ +|.|.||++++ ++
T Consensus 178 -~~~~---~~~I~~la~~~-~~~livD~a~~~g~~~~g~~~~~~~------~~di~~~S~~K~l--~g~~gg~i~~~~~~ 244 (416)
T PRK00011 178 -RPID---FKRFREIADEV-GAYLMVDMAHIAGLVAAGVHPSPVP------HADVVTTTTHKTL--RGPRGGLILTNDEE 244 (416)
T ss_pred -CccC---HHHHHHHHHHc-CCEEEEECcchhcccccCccCCCCC------CCcEEEecCCcCC--CCCCceEEEeCCHH
Confidence 4456 88999999999 999999999753 222221111111 2348899999976 67889999996 68
Q ss_pred HHHHHHHHhhhccCCCChH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeecc
Q 012124 319 FVAACNKIQSQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~-~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~ 396 (470)
+++.+.........+.+.. .+.++..++..- ..+++++.+++++++++++.+.|+++ |+++.. ...++++|+.++
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~ 321 (416)
T PRK00011 245 LAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR 321 (416)
T ss_pred HHHHHHHHhCccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc
Confidence 8888877665444333333 222222222210 13456778888999999999999987 777643 123477888885
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC-CC-----CCCCcEEEEee------cCHHHHHHHHHHHHHHHHh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-AF-----GDDTCIRISYA------ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~-~f-----~~~~~iRls~~------~~~~~i~~~l~~l~~~l~~ 463 (470)
+.- .+..++.+.|. +.||.+..+. .+ ..+..+|++.. .++++++..++.|++++..
T Consensus 322 ~~~----------~~~~~~~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 322 SKG----------LTGKEAEAALE-EANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred ccC----------CCHHHHHHHHH-HcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 320 14566777665 4599997432 11 12457999642 2689999999999988765
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=213.50 Aligned_cols=220 Identities=14% Similarity=0.189 Sum_probs=166.9
Q ss_pred CC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012124 127 YT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 200 (470)
Q Consensus 127 y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 200 (470)
|+ +..+..+|+++++++.. .+++++++|+++++..++.+++++||+|++++|.|+.+... ++..|+
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 129 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV 129 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe
Confidence 55 67788999999999963 24678899999999999999999999999999999876644 467899
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCEEEEEeccccccccCCCC
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPAT 279 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~-~~~~iI~Dd~~~~~~~~~~~ 279 (470)
+++.++. .|++.+++++++++++|++++|+||||.+.+ +++|.++|+++ +++++|+|++|....+.
T Consensus 130 ~v~~vd~-------~d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~--- 196 (400)
T PRK06234 130 EVTFVDT-------SNLEEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ--- 196 (400)
T ss_pred EEEEECC-------CCHHHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC---
Confidence 9998875 2889999999989999999999999999999 88888888884 27999999999875432
Q ss_pred cccccccCCCCCceEEEeccCccccccccee-eEEEcCHHHHHHHHHH--hhhccCCCChHHHHHHHHHHhcCCCChHHH
Q 012124 280 HTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVV 356 (470)
Q Consensus 280 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 356 (470)
.++ . .+..|++.|+||.++.+|.++ ||+++++++++.++.. ....+.+.+++....+...++. +
T Consensus 197 -~~l-~----~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-------l 263 (400)
T PRK06234 197 -RPL-Q----LGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-------L 263 (400)
T ss_pred -Cch-h----hCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------H
Confidence 111 1 245599999999998788775 9999999988887643 3334455666655444444432 2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 012124 357 SKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 357 ~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
..+.++..++...+.+.|++.|.+
T Consensus 264 ~~r~~~~~~na~~~a~~L~~~~~V 287 (400)
T PRK06234 264 QIRMEKHCKNAMKVAKFLESHPAV 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCe
Confidence 233344445666666777665443
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-23 Score=206.30 Aligned_cols=318 Identities=16% Similarity=0.175 Sum_probs=217.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc------CCCCeEE
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC------SPGDEVI 182 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~------~~gd~Vl 182 (470)
.+.+.+++...+......-....|..++.+.+.+.+.+..|. +++++++++|+++++..++.++. ++||+|+
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl 110 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHL--PDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNII 110 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCC--CCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 344455665554432111111125556556666666666674 56788999999999988776653 4779999
Q ss_pred EcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 183 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 183 v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
+++++|.++...++..|++++.++.+. ++.+|++.+++++++++..+++..|+||||...+ +++|.++|+++ ++
T Consensus 111 ~~~~~h~~~~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~-~~ 184 (373)
T TIGR03812 111 VPESAHFSFEKAAEMLGLELRYAPLDE--DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALEN-GI 184 (373)
T ss_pred ECCcchHHHHHHHHHcCCeEEEEeeCC--CCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHc-CC
Confidence 999999999999999999999999863 4568999999999877765555558999999988 88889999999 99
Q ss_pred EEEEeccccccccC--C--CCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhcc------
Q 012124 263 LVLSDEIYEHIIYA--P--ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFT------ 331 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~--~--~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~~------ 331 (470)
++|+|++|+.+... . .....+ .+.. .+-..+..|.+| +++++.++|+++ .++++++.+........
T Consensus 185 ~livD~a~~~~~~~~~~~~~~~~~~-d~~~-~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (373)
T TIGR03812 185 YLHVDAAFGGFVIPFLKKGYNPPPF-DFSL-PGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQAT 261 (373)
T ss_pred eEEEEcCchhHHHHHHhcCCCCCCc-cccC-CCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcc
Confidence 99999999864321 0 000010 1100 122244567789 445778888665 67777776642111111
Q ss_pred --CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCC
Q 012124 332 --SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGK 408 (470)
Q Consensus 332 --~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (470)
...+.....++..+++.- .+..+++..++..++++++.+.|+++ |+. +..+..++ +.+.++
T Consensus 262 ~~gt~~~~~~~~~~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-v~~~~~------------ 325 (373)
T TIGR03812 262 ITGTRSGASAAATYAVIKYL--GREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNI-VAFEVD------------ 325 (373)
T ss_pred eEeechhHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceE-EEEEeC------------
Confidence 122334455555566531 24567788899999999999999988 553 44455554 556665
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 409 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 409 ~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
+..++.++|.++ ||.+.++. .++++|++++. ++++++.+++.|++
T Consensus 326 --~~~~v~~~L~~~-gi~v~~~~---~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 326 --DPEEVRKKLRDR-GWYVSVTR---CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred --CHHHHHHHHHHC-CceeccCC---CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 345788888766 89887652 35789999985 88999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=209.74 Aligned_cols=351 Identities=14% Similarity=0.125 Sum_probs=228.3
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+ ........+....+++.+....+. ...+.+++++++++|.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e 115 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTH-TAYQIVPYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAVE 115 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccC-cccCccCCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHHH
Confidence 67788999888533 333 78999999999876321 111112345556666666653321 12258999999999999
Q ss_pred HHHHHhcC-CC-CeEEEcCCCCCChHHHHHH-cCC-------------EEEEecCcCCCCCcc----CHHhHhhhcc---
Q 012124 169 QAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISENFLL----DPKVLESKLT--- 225 (470)
Q Consensus 169 ~~~~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~----d~~~l~~~l~--- 225 (470)
.+++.... .| .+|+....+|++....... .|. .++.+|...+. .++ +++.+++.+.
T Consensus 116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~~ 194 (421)
T PRK09792 116 NAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSDI 194 (421)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhcc
Confidence 98886531 23 5788888999987543322 121 12223332111 112 3477777774
Q ss_pred --CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 226 --EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 226 --~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
+++++|++...++|+|..+ |.+.+++|.++|++| |+++|+||++.+|.+.+.. ..+..+....+ +.+|||.
T Consensus 195 ~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~-~a~~~~~~~pD----i~t~gK~ 268 (421)
T PRK09792 195 EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH-GIVMIADEVQSGFARTGKL-FAMDHYADKPD----LMTMAKS 268 (421)
T ss_pred CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCch-hHHHhcCCCCc----EEEeehh
Confidence 3567777766699999865 999999999999999 9999999999998665532 33333322122 6789999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
++ +|+|+||+++++++++.+.......+++.+++.+.++.+.++.-.. .++++++++.-+..++.+.+..+++|. +
T Consensus 269 l~-~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~l~~~~p~--v 344 (421)
T PRK09792 269 LA-GGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDK-ESLCERANQLGQRLKNTLIDAKESVPA--I 344 (421)
T ss_pred hc-CCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHhCCC--c
Confidence 98 9999999999999998876555556788999999966666553111 345555553333333333333233543 2
Q ss_pred cCCCc-eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 383 SEPQG-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 383 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
..+.+ |+++|+++++...... .......+++.++++ ||.+.+... ..+.|||.++. +++++++++++|.+
T Consensus 345 ~~vrG~Gl~~~ie~~~~~~~~~----~~~~~~~l~~~~~~~-Gv~i~~~g~--~~~~irl~P~l~i~~~ei~~~~~~l~~ 417 (421)
T PRK09792 345 AAVRGLGSMIAAEFNDPQTGEP----SAAIAQKIQQRALAQ-GLLLLTCGA--YGNVIRFLYPLTIPDAQFDAAMKILQD 417 (421)
T ss_pred ceecccceEEEEEecCCccCCc----chHHHHHHHHHHHHC-CcEEeecCC--CCCEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 33455 8999999974310000 001245677777765 898864221 14789999775 89999999999999
Q ss_pred HHH
Q 012124 460 GLL 462 (470)
Q Consensus 460 ~l~ 462 (470)
+++
T Consensus 418 ~l~ 420 (421)
T PRK09792 418 ALS 420 (421)
T ss_pred HHh
Confidence 875
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=199.71 Aligned_cols=332 Identities=20% Similarity=0.214 Sum_probs=239.1
Q ss_pred CCCeEEccCCC-CCCCChHHHHHHHHHHHHc-CC--CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 93 GVSVIRLAAGE-PDFDTPVLIAEAGINAIRE-GF--TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~-~~--~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
++++++|++++ ..+..++.+++++.+++.+ +. ..-....|..++.+.+.+.+.+++| .++-+++++|-. +..
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~SGy~-AN~ 113 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFSSGFV-ANL 113 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEcccch-hHH
Confidence 67889999998 5677788899999998876 21 1111123444444444444444445 334555555554 566
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCccc
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGS 242 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~ 242 (470)
.++.+|.+++|.|+.+.-.|.+..+.++..+++++.+.. .|++.|++.+++ +.+.|++...-...|.
T Consensus 114 ~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGd 186 (388)
T COG0156 114 GLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGD 186 (388)
T ss_pred HHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCC
Confidence 688899999999999999999999999999999998885 388999999965 2455666666778999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 321 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~ 321 (470)
+.| +++|++++++| ++++++||+|+...+++.+......+.-. .+..|.++||||.+|..| ||+.++..+++
T Consensus 187 iAp---L~~l~~L~~ky-~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d 259 (388)
T COG0156 187 IAP---LPELVELAEKY-GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSAALID 259 (388)
T ss_pred cCC---HHHHHHHHHHh-CcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcHHHHH
Confidence 999 89999999999 99999999999988876554444333221 456899999999999777 99999999999
Q ss_pred HHHHHhhhccC--CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc
Q 012124 322 ACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 322 ~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~ 399 (470)
.+....+.+.+ +.|+....++...|+. -......+++++++...+...+... |+.+.+..+.+ +.+.+.+.-
T Consensus 260 ~L~~~ar~~ifStalpP~~aaa~~~al~~----l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I-~pv~~gd~~ 333 (388)
T COG0156 260 YLRNRARPFIFSTALPPAVAAAALAALRI----LEEGPERRERLQELAAFFRSLLKAL-GLVLLPSESPI-IPVILGDEE 333 (388)
T ss_pred HHHHhCCceeccCCCCHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCe-eeeEeCCHH
Confidence 99876555443 3455555556666664 2233456666777777777555554 66554444444 444554321
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
.+.++...|+++ ||.+.+..+...+ ..+|++++. ++++|+.+++.|.++
T Consensus 334 -----------~a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 334 -----------RALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred -----------HHHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 577888888888 9999886654433 589999987 999999999988764
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=204.67 Aligned_cols=306 Identities=20% Similarity=0.289 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
.++.++++.+.+..+.. + |..++++++.+++.+..| .+++++|+|+++++.+++.++ ++|||+|++++++
T Consensus 10 ~~~e~~a~~~~~~~~~~-~----~~g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t 80 (376)
T TIGR02379 10 TGQELEYIAEAISEGKL-S----GDGPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYT 80 (376)
T ss_pred CHHHHHHHHHHHHcCCc-c----CCcHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 45567788888766432 1 224677888888877654 368999999999999999887 7999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+.+...+...|++++.++++++ ++.+|++.+++++++++++|+ |+||+|...+ +++|.++|++| |++||+|
T Consensus 81 ~~~~~~~~~~~G~~~v~vd~d~~-~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~-~i~vIeD 152 (376)
T TIGR02379 81 FVSTANAFVLRGAKIVFVDIRPD-TMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKH-QLFVIED 152 (376)
T ss_pred cHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHC-CCEEEEE
Confidence 99999999999999999999854 477999999999998999886 6778999998 77999999999 9999999
Q ss_pred ccccccc-cCCCCcccccccCCCCCceEEEeccC----cccccccceeeEEEcC-HHHHHHHHHHhhhc-----------
Q 012124 268 EIYEHII-YAPATHTSFASLPGMWERTLTVNGFS----KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF----------- 330 (470)
Q Consensus 268 d~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s----K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~----------- 330 (470)
++|+.+. |.+.. +..+ ..+++|| |.+. +|.+.|+++.+ +++.++++.++...
T Consensus 153 aa~~~g~~~~~~~---~g~~-------~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 221 (376)
T TIGR02379 153 AAQGVMSTYKGRA---LGSI-------GHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEV 221 (376)
T ss_pred CccccCCccCCcc---cCCC-------CCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCC
Confidence 9998754 44321 1111 2244555 8885 88889998876 78888887665421
Q ss_pred ----------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC--C-Ceec--CCC--ce-EEEe
Q 012124 331 ----------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--G-VKMS--EPQ--GA-FYLF 392 (470)
Q Consensus 331 ----------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g-~~~~--~~~--~g-~~~~ 392 (470)
++-.+.+....+...|+. .++..++.++.++... +.|.+++ + +.+. ++. .. ++++
T Consensus 222 ~~~~~~~~g~n~~~~~~~Aa~g~~qL~~---l~~~~~~r~~~~~~y~----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (376)
T TIGR02379 222 DKYTWRDIGSSYLPSELQAAYLWAQLEQ---ADRINQDRLATWQLYQ----DALKPLEEKGIIELPSIPNGCQHNAHMFY 294 (376)
T ss_pred CcceeeeecccCCccHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH----HHhccCCcCCeeeCCCCCCCCeeeeEEEE
Confidence 111222322222233332 2444444444444444 4443332 1 1211 111 12 2335
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC----C------CC--C----------CCcEEEEeec--CHH
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD----A------FG--D----------DTCIRISYAA--SLT 448 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~----~------f~--~----------~~~iRls~~~--~~~ 448 (470)
+.++... +-+++.+.|.++ ||.+.++. . |. . ...+.|-+.. +++
T Consensus 295 i~~~~~~-----------~r~~l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~ 362 (376)
T TIGR02379 295 IKLKDED-----------DRNELIKYLKEQ-EIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKE 362 (376)
T ss_pred EEECCcC-----------CHHHHHHHHHHC-CCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHH
Confidence 6665421 567888888765 89876422 1 10 0 1246665554 889
Q ss_pred HHHHHHHHHHHHH
Q 012124 449 TLQAAVERIKKGL 461 (470)
Q Consensus 449 ~i~~~l~~l~~~l 461 (470)
+++..++.|++++
T Consensus 363 ~~~~i~~~i~~~~ 375 (376)
T TIGR02379 363 DQARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=207.60 Aligned_cols=334 Identities=14% Similarity=0.112 Sum_probs=210.4
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcCC-CCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGF-TRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~-~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++||+.+.+ .+..++++.+++.+++.+.. ..+... ....+..+.+++.+.+..|. +.++.++| .++.
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~~~~~~sG-~~a~ 118 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA----SVLTFTSC-SAAH 118 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC----CEEEECCh-HHHH
Confidence 5778899977542 23458999999999987521 121111 12234455555555544442 44555555 5667
Q ss_pred HHHHHHhc----CCCC-eEEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC
Q 012124 168 LQAVLAVC----SPGD-EVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239 (470)
Q Consensus 168 ~~~~~~l~----~~gd-~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP 239 (470)
..++..+. .+|+ .|++.+..|++.. ......+.+++.+|. .|++.++++++++++++++++|+||
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~~~vl~~p~~~ 191 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKTVAYVADGVYS 191 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCCEEEEEecccc
Confidence 66665432 2232 3656666665432 112224567777775 3889999998777889999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCC-CCCceEEEeccCcccccccceeeEEE-cC
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIA-GP 316 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~-~~~~~i~i~S~sK~~~~~G~r~G~~~-~~ 316 (470)
||.+++ +++|.++|+++ ++++|+||+|+...++..... ....+.. ..+++++++||||.++.+| ||++ .+
T Consensus 192 ~G~~~~---~~~i~~l~~~~-~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~ 264 (402)
T PRK07505 192 MGGIAP---VKELLRLQEKY-GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---GVIMLGD 264 (402)
T ss_pred cCCcCC---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---eEEEeCC
Confidence 999999 78888999999 999999999865444322111 1112221 3578999999999998665 8877 47
Q ss_pred HHHHHHHHHHhhhccCC--CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeee
Q 012124 317 KHFVAACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394 (470)
Q Consensus 317 ~~~~~~l~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~ 394 (470)
+++++.+......++++ ++++...++.+.++.- .++++.+.++.++++.+.+.+.+... . .....++.++.
T Consensus 265 ~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----~-~g~~~~i~~~~ 337 (402)
T PRK07505 265 AEQIELILRYAGPLAFSQSLNVAALGAILASAEIH--LSEELDQLQQKLQNNIALFDSLIPTE----Q-SGSFLPIRLIY 337 (402)
T ss_pred HHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHhc----C-CCCCCCEEEEE
Confidence 88888887765554443 4456777766666510 12334444555555555443332111 0 11111222333
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
++... +..++.++|+++ ||.+.++..+.. ++++|+++.. +++++++++++|++++++
T Consensus 338 ~~~~~-----------~~~~~~~~l~~~-Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 338 IGDED-----------TAIKAAKQLLDR-GFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred eCCHH-----------HHHHHHHHHHHC-CCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 33210 356788888865 999998743332 2589999985 999999999999998764
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-24 Score=212.12 Aligned_cols=350 Identities=13% Similarity=0.045 Sum_probs=220.6
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+ +.......+.+..+++.+.+..+. ...+.+++++++++|++
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~e 108 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTH-TCFMVTPYEGYVALAEKLNRIAPG-SGPKKSVFFNSGAEAVE 108 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccC-ccccccCChHHHHHHHHHHHhCCC-CCCCEEEEeCCcHHHHH
Confidence 67788999888633 233 78899999999876321 111112234455566666543321 12368999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcCCC---------CCccCHHhHhhh
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISE---------NFLLDPKVLESK 223 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~---------~~~~d~~~l~~~ 223 (470)
.+++... ....+|+...-+|++....+... |- .+..+|..... .+.-+++.+++.
T Consensus 109 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (420)
T TIGR00700 109 NAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAI 188 (420)
T ss_pred HHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHH
Confidence 9888642 22357888888999876543332 11 11222221000 000124566665
Q ss_pred cc-----CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEe
Q 012124 224 LT-----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 297 (470)
Q Consensus 224 l~-----~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 297 (470)
+. +++.+|++...+.-+|..+ +.+.+++|.++|++| |+++|+||+|.+|.+.+. ...+... +....+.
T Consensus 189 ~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tg~gr~g~-~~a~~~~----~~~pDi~ 262 (420)
T TIGR00700 189 FVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH-GIVFIADEVQTGFARTGA-MFACEHE----GPEPDLI 262 (420)
T ss_pred HHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEecccCCcccch-hHHHhhc----CCCCCEE
Confidence 52 3566777755576788866 555599999999999 999999999999866543 1122212 2223356
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
+|||.++ +|+|+||+++++++++.+.......+++.+++.|.++.+.|+. +.+ .++++++.+.++ +.+.+..
T Consensus 263 ~lsK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~---~~L~~l~ 337 (420)
T TIGR00700 263 TTAKSLA-DGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL-IERARQIGRLVT---DRLTTLK 337 (420)
T ss_pred Eeecccc-CCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH---HHHHHHH
Confidence 7999998 9999999999999998886555567888999999999777642 211 233333333333 3333333
Q ss_pred ccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHH
Q 012124 375 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQA 452 (470)
Q Consensus 375 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~ 452 (470)
.+++.+....+. |+++|+.+.+... ..........+.+.+.+ .||.+.|+..|+ +++||+++. +++++++
T Consensus 338 ~~~~~~~~vrg~-G~~~~i~~~~~~~----~~~~~~~~~~l~~~~~~-~Gv~i~p~~~f~--~~lRl~p~l~~~~~~l~~ 409 (420)
T TIGR00700 338 AVDPRIGDVRGL-GAMIAVELVDPGT----TEPDAGLAERIATAAHA-AGLLLLTCGMFG--NIIRFLPPLTIGDELLSE 409 (420)
T ss_pred hhCCCEEEeecc-ceEEEEEEecCCC----CCccHHHHHHHHHHHHH-CCeEEeccCCCC--CEEEEECCCCcCHHHHHH
Confidence 334444444444 6668887732100 00000013455555555 599999987774 799999864 8999999
Q ss_pred HHHHHHHHHH
Q 012124 453 AVERIKKGLL 462 (470)
Q Consensus 453 ~l~~l~~~l~ 462 (470)
++++|+++++
T Consensus 410 ~~~~l~~~l~ 419 (420)
T TIGR00700 410 GLDILCAILA 419 (420)
T ss_pred HHHHHHHHhh
Confidence 9999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-23 Score=204.20 Aligned_cols=333 Identities=13% Similarity=0.159 Sum_probs=226.9
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+.+|. ..+.. +|.+.+++.+++.+... .+. ....+....+++.+.+..+ .+.+++++++++|..
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~-~~~~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e 106 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH-IGN-GYTNEPVLRLAKKLVDATF----ADKVFFCNSGAEANE 106 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccc-ccC-ccCCHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHH
Confidence 577889998873 33333 89999999999875211 111 1123455666666665433 369999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHH-HHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCC
Q 012124 169 QAVLAVC-------SPG-DEVIIPAPFWVSYPEM-ARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 169 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~-~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
.+++... .+| +.|+..+-+|++.... +...+.. +..+|. .|++.+++.+.++
T Consensus 107 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 179 (397)
T TIGR03246 107 AALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKALISDK 179 (397)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHHHhccC
Confidence 9998752 123 5778888888886543 3333321 122221 3889999999888
Q ss_pred ceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 228 SRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++|++...+++.|... +.+.+++|.++|++| |+++|.||+|..+...+... ....+ +...-+-+|||.++ +
T Consensus 180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~Gr~G~~~-a~~~~----gv~pDi~t~~K~lg-g 252 (397)
T TIGR03246 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH-NALLIFDEVQTGVGRTGELY-AYMHY----GVTPDILTSAKALG-G 252 (397)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCccccch-hhhhc----CCCCCEEEeehhhh-C
Confidence 88888886677777654 899999999999999 99999999998764443211 11111 11122448999998 8
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---C-Cee
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---G-VKM 382 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g-~~~ 382 (470)
|+++||+++++++++.+.......+++.+++.+.++.+.|+.- + ..++.+.++++.+++.+.|+++. + +..
T Consensus 253 G~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~---~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~ 327 (397)
T TIGR03246 253 GFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLV---N--TPELLAGVKQRHDLFVDGLEKINARYNVFSE 327 (397)
T ss_pred CcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence 9999999999999888865444456678899999988888741 1 23466777788888888887651 1 112
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~ 460 (470)
... .|.++.+.+.+... .....+++.|+++ ||.+.+.. .+++|++.+ .+++++++++++|.++
T Consensus 328 vrg-~G~~~~i~~~~~~~---------~~~~~~~~~l~~~-Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~~~~l~~~ 392 (397)
T TIGR03246 328 IRG-KGLLIGAVLTEAYQ---------GKAKQFVNAAAEE-GVIALIAG----PNVVRFAPSLVISDDDIDEGLARFERA 392 (397)
T ss_pred eec-CceEEEEEEcCchh---------hHHHHHHHHHHHC-CeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 222 34445555532100 1456788888766 88887631 368999654 4999999999999999
Q ss_pred HHhh
Q 012124 461 LLTL 464 (470)
Q Consensus 461 l~~~ 464 (470)
++++
T Consensus 393 l~~~ 396 (397)
T TIGR03246 393 IEQV 396 (397)
T ss_pred HHHh
Confidence 8753
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-23 Score=207.38 Aligned_cols=354 Identities=14% Similarity=0.109 Sum_probs=222.6
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+..+.. ...-..+....+++.|....+.. ..+.+++++++++|.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e 129 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTG-FNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVE 129 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCcc-ccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHH
Confidence 67789999888643 333 7889999999987632211 11122456677777776544311 1258999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcCC--CCCccC--------HHhHhh
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRIS--ENFLLD--------PKVLES 222 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~--~~~~~d--------~~~l~~ 222 (470)
.+++... .....|+....+|++........ |. .+..+|.... ...++. ++.+++
T Consensus 130 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (451)
T PRK06918 130 NAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKN 209 (451)
T ss_pred HHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHH
Confidence 9988642 22357888888999877544332 21 1222222110 000111 123333
Q ss_pred hc----c-CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEE
Q 012124 223 KL----T-EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 296 (470)
Q Consensus 223 ~l----~-~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i 296 (470)
.+ . +++.+|++...+.-.|.++ +.+.+++|.++|++| |+++|+||+|.+|.+.+. ..++..++...+ +
T Consensus 210 ~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~-gillI~DEV~tg~gr~g~-~~a~~~~~v~pD----i 283 (451)
T PRK06918 210 FFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH-GILFVADEIQTGFARTGK-YFAIEHFDVVPD----L 283 (451)
T ss_pred HHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCcCccCc-eehhHhcCCCCC----E
Confidence 32 2 2444555533344457644 566699999999999 999999999999876553 223333332112 5
Q ss_pred eccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG---LGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
.||||.++ +|+|+||+++++++++.+.......+++.+++.|.++.+.|+ .+.+ .++++++.+.+.++.+.+.+
T Consensus 284 ~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~~l~~l~~- 360 (451)
T PRK06918 284 ITVSKSLG-AGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENL-NDRAIELGKVVMNRFEEMKN- 360 (451)
T ss_pred Eeeehhhc-CCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHh-
Confidence 58999998 999999999999999888655566778899999999766665 3322 44555555555554444433
Q ss_pred hccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH
Q 012124 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ 451 (470)
Q Consensus 374 L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~ 451 (470)
+.+.+....+.|+++.|....+... ..........+.+.+.+ .||.+.|+..|+ +++|++++. ++++|+
T Consensus 361 --~~~~~~~vrg~G~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~-~Gvlv~~~~~~~--~~lrl~p~l~~t~~~id 431 (451)
T PRK06918 361 --KYNCIGDVRGLGAMCAFELVQDRKT----KEPDKTLTANICKEANK-RGLLLLSAGTYG--NVIRVLMPLVITDEQLE 431 (451)
T ss_pred --hCCCceeeccceeEEEEEEccCCCc----CCCcHHHHHHHHHHHHH-CCeEEeecCCCC--CEEEEECCCccCHHHHH
Confidence 2333333445677776644311100 00000023455665555 599999986663 789999864 899999
Q ss_pred HHHHHHHHHHHhhC
Q 012124 452 AAVERIKKGLLTLR 465 (470)
Q Consensus 452 ~~l~~l~~~l~~~~ 465 (470)
+++++|+++++++.
T Consensus 432 ~~l~~l~~~l~~~~ 445 (451)
T PRK06918 432 EGLTIIEESLQACY 445 (451)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-23 Score=202.79 Aligned_cols=214 Identities=16% Similarity=0.195 Sum_probs=164.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~ 208 (470)
..+|++.+++++ | .+++++++|+++|+..++.+++++||+|+++++.|.+... .+...|++++.++++
T Consensus 63 ~~~le~~la~l~----g----~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 63 VTMFQERLAALE----G----AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 456777777764 3 3578999999999999999999999999999999987654 456789999999862
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
|++.+++++++++++|++++|+||||.+++ +++|+++|+++ |++||+|++|....+. .++ .
T Consensus 135 -------d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~-gi~livD~t~~~~~~~----~pl-~--- 195 (390)
T PRK08133 135 -------DLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAA-GALLVVDNCFCTPALQ----QPL-K--- 195 (390)
T ss_pred -------CHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-h---
Confidence 789999999999999999999999999998 88999999999 9999999998753321 111 1
Q ss_pred CCCceEEEeccCccccccccee-eEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (470)
.+..+++.|+||.++.+|.++ ||+++++++++.+...........+++.+.. ++.. -+.+..+.+++.+++
T Consensus 196 -~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~---~l~g----l~tl~~R~~~~~~~a 267 (390)
T PRK08133 196 -LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWV---FLKG----LETLSLRMEAHSANA 267 (390)
T ss_pred -hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHH---HHcc----cchHHHHHHHHHHHH
Confidence 233588999999998788887 6777888888877766555555555554333 3332 224555556666788
Q ss_pred HHHHHHhccCCCCe
Q 012124 368 DFLVKSFGELEGVK 381 (470)
Q Consensus 368 ~~l~~~L~~~~g~~ 381 (470)
..+.+.|++.|++.
T Consensus 268 ~~la~~L~~~p~v~ 281 (390)
T PRK08133 268 LALAEWLEAHPGVE 281 (390)
T ss_pred HHHHHHHHhCCCee
Confidence 88888888876653
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-23 Score=201.28 Aligned_cols=217 Identities=13% Similarity=0.185 Sum_probs=163.7
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCC----hHHHHHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS----YPEMARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~ 204 (470)
......+|++.++++.. . ...+++ +++++++..++.++++|||+|++++|.|.+ +...++..|+++..
T Consensus 43 ~~p~~~~L~~~lA~l~g----~---~~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~ 114 (376)
T PRK06460 43 ANPTVLELTKKIVELEN----A---EMGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDA 114 (376)
T ss_pred CCccHHHHHHHHHHHhC----C---CcEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEE
Confidence 34577889999999863 2 234555 555689999999999999999999876643 44567789999988
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++.+ +.+.+++.+++++++|++++|+||||.+++ +++|+++|+++ |++||+|++|.... ...
T Consensus 115 ~~~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~-g~~vivDea~~~~~-------~~~ 176 (376)
T PRK06460 115 SNPG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKEN-GSILIVDATFSTPI-------NQK 176 (376)
T ss_pred ECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCcCccc-------cCC
Confidence 8753 224455556778999999999999999999 56789999999 99999999997531 111
Q ss_pred ccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
.+. .+.++++.|+||.++ ..+.++||+++++++++.+.+.+..++.+.++.. +..++.. .++++.+.++.
T Consensus 177 ~l~--~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~---a~~~l~~----~~~l~~r~~~~ 247 (376)
T PRK06460 177 PLE--LGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHA---AYLTLRG----IKTLKIRMDVI 247 (376)
T ss_pred hhh--cCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHHH---HHHHHhc----hhhHHHHHHHH
Confidence 121 245699999999984 2236799999999999999888777766666532 3333442 56777888888
Q ss_pred HHHHHHHHHHhccCCCC
Q 012124 364 RERRDFLVKSFGELEGV 380 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~ 380 (470)
.++++.+.+.|++.|.+
T Consensus 248 ~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 248 NRNAEQIAEFLEGHPKV 264 (376)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 99999999999877654
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-23 Score=204.31 Aligned_cols=285 Identities=15% Similarity=0.168 Sum_probs=195.4
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 204 (470)
+.+-..+|++.++++. | . +..+++++++.++..++.+++++||+|++++|.|......+. ..|+++..
T Consensus 59 ~~pt~~~Le~~lA~l~----G---~-~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~ 130 (386)
T PRK06767 59 GNPTVKLFEERMAVLE----G---G-EEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSF 130 (386)
T ss_pred CCcchHHHHHHHHHHh----C---C-CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEE
Confidence 3445678888888886 3 2 234555555679999999999999999999999987665543 34665555
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|....+. .++.
T Consensus 131 ~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~----~pl~ 195 (386)
T PRK06767 131 CDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRN-GLLVIVDNTFCSPYLQ----RPLE 195 (386)
T ss_pred eCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cchh
Confidence 543 3889999999889999999999999999999 78889999999 9999999999743221 1111
Q ss_pred ccCCCCCceEEEeccCccccccccee-eEEEcCHHHHHHHHH-HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNK-IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~~l~~-~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
.+..+++.|+||.++.+|.++ ||++++++++..+.+ .........+++.+.++...|+ .+..+.++
T Consensus 196 -----~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~-------tl~~r~~~ 263 (386)
T PRK06767 196 -----LGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK-------TLAVRMDR 263 (386)
T ss_pred -----cCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHHHHHHH
Confidence 233488899999997678885 999999988877643 3333444456665544333332 23445567
Q ss_pred HHHHHHHHHHHhccCCCCee-cCC-----------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012124 363 FRERRDFLVKSFGELEGVKM-SEP-----------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~-~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg 430 (470)
.+++.+.+.+.|+++|++.. ..| .+|+ +.+++.+.. ++..+|.++|. ..++.+.-|
T Consensus 264 ~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~-vsf~l~~~~----------~~~~~f~~~l~-~~~~~~s~G 331 (386)
T PRK06767 264 HCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGV-ISFSIKGGK----------EETQAFINDLH-FITIAVSLG 331 (386)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCce-EEEEEcCCH----------HHHHHHHHhCC-ccEEecCCC
Confidence 78889999999999988763 322 3455 444664210 14567887764 346655555
Q ss_pred CCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 431 DAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 431 ~~f~-----------------------~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.... .++.+|||++.. +.+..++.|.++++
T Consensus 332 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE--~~~dl~~dl~~al~ 384 (386)
T PRK06767 332 DTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLE--SWEDIVSDLEQALK 384 (386)
T ss_pred CcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Confidence 3321 025799999983 24445555555554
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-23 Score=202.24 Aligned_cols=217 Identities=17% Similarity=0.194 Sum_probs=165.2
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 204 (470)
+.+-..+|++.++++. | .++.++++++++++..++.+++++||+|+++.|+|.+... .+...|++++.
T Consensus 62 ~~p~~~~le~~lA~l~----g----~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 62 TNPTVQAFEEKVRILE----G----AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred CChHHHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEE
Confidence 3345577888888875 3 2456777777899999999999999999999999987654 34567888877
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++ |++||+|++|...... .++
T Consensus 134 vd~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~----~~l- 197 (398)
T PRK08249 134 CET-------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKV-GALVVVDNTFATPINQ----NPL- 197 (398)
T ss_pred cCC-------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCcCccccC----Cch-
Confidence 653 5899999999999999999999999999999 77899999999 9999999999864322 111
Q ss_pred ccCCCCCceEEEeccCccccccccee-eEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
.. +..+++.|+||.++.+|.++ ||+++++++++.+...+.....+.+++.+..+...++. +....++.
T Consensus 198 ~~----~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------L~~R~~~~ 266 (398)
T PRK08249 198 AL----GADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT-------LKLRVRQQ 266 (398)
T ss_pred hh----CCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-------HHHHHHHH
Confidence 11 23378899999997556665 77888999999998877766667777766655544432 33444555
Q ss_pred HHHHHHHHHHhccCCCC
Q 012124 364 RERRDFLVKSFGELEGV 380 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~ 380 (470)
.++++.+.+.|++.|.+
T Consensus 267 ~~na~~la~~L~~~p~v 283 (398)
T PRK08249 267 QESAMALAKYLQTHPKV 283 (398)
T ss_pred HHHHHHHHHHHHcCCCe
Confidence 67777777888776544
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=199.08 Aligned_cols=220 Identities=15% Similarity=0.169 Sum_probs=170.7
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCC
Q 012124 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADA 200 (470)
Q Consensus 125 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~ 200 (470)
.+| +.+....|+++++++. | .+++++++|+++++..++.++++|||+|++++|+|++....+. ..|.
T Consensus 47 ~R~-~~pt~~~L~~~lA~l~----g----~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi 117 (386)
T PRK08045 47 SRR-GNPTRDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_pred eCC-CCccHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence 445 4445678888888875 3 2469999999999999999999999999999999997554333 2344
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
++..++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ |++||+|++|....+.
T Consensus 118 ~v~~vd~-------~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~-g~~vivDeay~~~~~~---- 182 (386)
T PRK08045 118 RVLFVDQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREA-GAVSVVDNTFLSPALQ---- 182 (386)
T ss_pred EEEEeCC-------CCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCccccC----
Confidence 6555531 5899999999889999999999999999999 77889999999 9999999999764321
Q ss_pred ccccccCCCCCceEEEeccCcccc-cccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
.++ .+ +..+++.|++|.++ .++.+.|++++ ++++++.+.........+.+++.+..+...|+. +..
T Consensus 183 ~pl-~~----gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~ 250 (386)
T PRK08045 183 NPL-AL----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVP 250 (386)
T ss_pred Cch-hh----CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHH
Confidence 122 11 22489999999984 46677999876 678888888777778888999988877777763 455
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q 012124 359 MVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
+.++..+++..+.+.|++.|.+
T Consensus 251 R~~~~~~na~~la~~L~~~p~v 272 (386)
T PRK08045 251 RMELAQRNAQAIVKYLQTQPLV 272 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCE
Confidence 6666677778888888877654
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=199.65 Aligned_cols=221 Identities=14% Similarity=0.181 Sum_probs=165.9
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcC
Q 012124 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IAD 199 (470)
Q Consensus 124 ~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g 199 (470)
..+| +..-..+|++.++++. | .+++++++|+++++.+++.+++++||+|++++|+|.+....+. ..|
T Consensus 45 Y~R~-~~p~~~~le~~lA~l~----g----~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 45 YSRS-GNPTRDLLQQALAELE----G----GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred ccCC-CCchHHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 3445 3445678888888875 2 3689999999999999999999999999999999987655433 234
Q ss_pred CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC
Q 012124 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279 (470)
Q Consensus 200 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~ 279 (470)
.++..++. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++ |++||+|++|....+.
T Consensus 116 ~~v~~~d~-------~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~--- 181 (382)
T TIGR02080 116 FRVLFVDQ-------GDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAV-GAVVVVDNTFLSPALQ--- 181 (382)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCcccccC---
Confidence 55554431 3889999999889999999999999999999 77889999999 9999999999764322
Q ss_pred cccccccCCCCCceEEEeccCcccc-cccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHH
Q 012124 280 HTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 357 (470)
Q Consensus 280 ~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 357 (470)
.++ .+ +..++++|+||.++ .++++.|++++ ++++++++...+...+.+.+++.+..+..-++ .+.
T Consensus 182 -~pl-~~----gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-------tl~ 248 (382)
T TIGR02080 182 -NPL-AL----GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLR-------TLV 248 (382)
T ss_pred -Cch-hh----CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccc-------hHH
Confidence 122 11 22488999999884 46789999876 67888888888777777788887655533332 233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 012124 358 KMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 358 ~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
.+.++..++...+.+.|++.|.+
T Consensus 249 ~R~~~~~~na~~~a~~L~~~p~v 271 (382)
T TIGR02080 249 ARMRLQQRNAQAIVEYLQTQPLV 271 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCe
Confidence 33455567777777788766544
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=206.72 Aligned_cols=307 Identities=18% Similarity=0.165 Sum_probs=211.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCC---CCcC------cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc--
Q 012124 107 DTPVLIAEAGINAIREGFTRYT---PNAG------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-- 175 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~---~~~g------~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-- 175 (470)
++|+.+.+++.+.+........ ...+ ..++|+.++++ .| +++++|++|+|+++++..++..+.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~v~~~~g~t~a~~~~l~~l~~~ 82 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEA----LG--ADTEEVIFTSGATESNNLAILGLARA 82 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 3578889998888754221111 1111 23455555555 45 467899999999999999988875
Q ss_pred --CCC-CeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHH
Q 012124 176 --SPG-DEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 176 --~~g-d~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
.+| +.|++....|+.+.. .++..|++++.++.+. ++.+|++.++++++++++++++++++||||..++ +
T Consensus 83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~ 157 (353)
T TIGR03235 83 GEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---I 157 (353)
T ss_pred cccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---H
Confidence 356 788888777776544 3456799999999864 3458999999999888999999999999999999 7
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH--HHH-
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC--NKI- 326 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l--~~~- 326 (470)
++|.++|+++ |+++|+|++++.... ...+ .. .+-.+++.|++|.+|.+| +|+++++++..... ...
T Consensus 158 ~~I~~l~~~~-~~~~ivD~a~~~g~~----~~~~---~~-~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~ 226 (353)
T TIGR03235 158 REIAEVLEAH-EAFFHVDAAQVVGKI----TVDL---SA-DRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIM 226 (353)
T ss_pred HHHHHHHHHc-CCEEEEEchhhcCCc----cccc---cc-cCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCcee
Confidence 8999999999 999999999874221 1122 11 245588889999887445 79998887643221 100
Q ss_pred ------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccC
Q 012124 327 ------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFST 397 (470)
Q Consensus 327 ------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~ 397 (470)
.......++.....++.++++. .....++++++++++++++.+.|++ +|+++..+.. ...+.+.+++
T Consensus 227 ~~~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~ 302 (353)
T TIGR03235 227 FGGGQERGLRPGTLPVHLIVGMGEAAEI---ARRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDG 302 (353)
T ss_pred eCCCCcCccccCCCChHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCC
Confidence 0111233455555566666654 2345678889999999999999988 5887764322 1123344443
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC----CcEEEEeecCHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD----TCIRISYAASLTTLQAA 453 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~----~~iRls~~~~~~~i~~~ 453 (470)
. +..++.+.| ++ +|.+.+|..|... .++|.+++.+++++..+
T Consensus 303 ~------------~~~~v~~~L-~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~ 348 (353)
T TIGR03235 303 V------------NSEALIVNL-RA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGA 348 (353)
T ss_pred c------------CHHHHHHHH-hC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHhCcc
Confidence 2 667788777 45 8999999988643 36888888766555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=198.39 Aligned_cols=213 Identities=15% Similarity=0.178 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 208 (470)
..+|++.++++ .|. ++++ +++++++++.+++.++++|||+|+++.|+|.+.. ..++..|.+++.++.
T Consensus 62 ~~~Le~~lA~l----~g~---~~~v-~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~- 132 (405)
T PRK08776 62 RDLLGEALAEL----EGG---AGGV-ITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL- 132 (405)
T ss_pred HHHHHHHHHHH----hCC---CceE-EEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC-
Confidence 34566666655 342 3455 5555579999999999999999999999998743 445567888888875
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|++.+++++++++++|++++|+||||.+.+ +++|+++|+++ |++||+|++|.... ...++ .+
T Consensus 133 ------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~-gi~vIvD~a~a~~~----~~~pl-~~-- 195 (405)
T PRK08776 133 ------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKV-GALTVVDNTFLSPA----LQKPL-EF-- 195 (405)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCCcccc----cCCcc-cc--
Confidence 3889999999889999999999999999977 88999999999 99999999997521 11222 12
Q ss_pred CCCceEEEeccCcccccc-cceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMT-GWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~-G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
+..+++.|.+|.++.+ ++..|+++. ++++.+++.........+.+++.+.++...+ ++++.+.++..++
T Consensus 196 --gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-------~tl~~r~~~~~~n 266 (405)
T PRK08776 196 --GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL-------RTLDARLRVHQEN 266 (405)
T ss_pred --cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------CcHHHHHHHHHHH
Confidence 3348999999999644 467898876 5778888877666666667887766655433 4566777777888
Q ss_pred HHHHHHHhccCCCC
Q 012124 367 RDFLVKSFGELEGV 380 (470)
Q Consensus 367 ~~~l~~~L~~~~g~ 380 (470)
...+.+.|++.|.+
T Consensus 267 a~~la~~L~~~p~v 280 (405)
T PRK08776 267 ADAIAALLDGHAAV 280 (405)
T ss_pred HHHHHHHHHcCCCe
Confidence 88888888876654
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=207.04 Aligned_cols=350 Identities=15% Similarity=0.181 Sum_probs=226.2
Q ss_pred cCCCeEEccCCCCCC---CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDF---DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~---~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.+.. ..++.+.+++.+++.+....|.+..+..+|.+.+++.+ . ..+.+++++++++|++
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGseA~e 120 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTEATM 120 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHHHHH
Confidence 577899999987553 24889999999999875444445444455555555442 2 3468999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHc-CCE------------EEEecCcCCCCCccCHHhHhhhcc---CCceE
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DAT------------PVILPTRISENFLLDPKVLESKLT---EKSRL 230 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-g~~------------~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~ 230 (470)
.+++.... .++.|+..+++|+++...+... |.. .+.++.....-...|++.+++.+. +++.+
T Consensus 121 ~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aa 200 (426)
T PRK00062 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAA 200 (426)
T ss_pred HHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEE
Confidence 99987543 3578999999999987443321 110 000000000000027888888774 35667
Q ss_pred EEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccce
Q 012124 231 LILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 231 i~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
|++...+..+|...+ .+.+++|.++|++| |+++|.||+|..+.+++..........+ + +.+|||.++ .|++
T Consensus 201 iivEpv~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~G~r~g~~~~~~~~~~~p--D----i~~~gK~l~-~G~p 272 (426)
T PRK00062 201 VIVEPVAGNMGVVPPKPGFLEGLRELCDEH-GALLIFDEVMTGFRVALGGAQGYYGVTP--D----LTTLGKIIG-GGLP 272 (426)
T ss_pred EEEeCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeechhccccCCccHHHHhCCCc--c----hHhhhhHhh-CCCc
Confidence 777544445887775 88899999999999 9999999999987554321111122222 2 568999998 8999
Q ss_pred eeEEEcCHHHHHHHHH---HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cCC
Q 012124 310 LGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEP 385 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~ 385 (470)
+|++++++++++.+.. .....+++.+++.+.++.+.|+.-.. ++..++.++.....++.+.+.+++. ++.. ..+
T Consensus 273 ~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vrg 350 (426)
T PRK00062 273 VGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTKRLAEGLKEAAKKA-GIPLTVNR 350 (426)
T ss_pred ceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHc-CCceEEEE
Confidence 9999999999988852 22334567899999999888874221 3455666666666666666555555 4433 223
Q ss_pred CceEEEeeeccCccCCcc-cCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEA-EGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.+.| +-+.+........ .... .......+...|.++ ||.+.|.. .+.+++++..+++++++++++|++++++
T Consensus 351 ~G~~-~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 351 VGSM-FGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYLAPSQ----FEAGFVSAAHTDEDIEKTLEAARKAFAA 424 (426)
T ss_pred ecce-EEEEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEeecCC----cCceeeeccCCHHHHHHHHHHHHHHHHh
Confidence 4444 4444432100000 0000 000135677777765 99998742 2467888777999999999999999876
Q ss_pred h
Q 012124 464 L 464 (470)
Q Consensus 464 ~ 464 (470)
+
T Consensus 425 ~ 425 (426)
T PRK00062 425 L 425 (426)
T ss_pred h
Confidence 4
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=198.43 Aligned_cols=311 Identities=18% Similarity=0.261 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCCC
Q 012124 110 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 188 (470)
Q Consensus 110 ~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y 188 (470)
+.-.+++.+.+..+. .| |..++++++++++++.+|. +++++++|+++++.+++..+ +++||+|+++.|+|
T Consensus 11 ~~~~~~~~~~l~~~~-~~----g~~~~~~~~e~~la~~~g~----~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~ 81 (375)
T PRK11706 11 GTELDYIQQAMSSGK-LC----GDGGFTRRCQQWLEQRFGS----AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTF 81 (375)
T ss_pred HHHHHHHHHHHHcCC-cc----CCCHHHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCc
Confidence 444667777776542 22 3346788888888776553 68999999999999887765 68999999999999
Q ss_pred CChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEec
Q 012124 189 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268 (470)
Q Consensus 189 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd 268 (470)
+.+...+...|++++.++++++ ++.+|++.+++++++++++|+++ |+||...+ +++|.++|+++ |++||+|+
T Consensus 82 ~~~~~~~~~~G~~~v~~d~d~~-~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~-~i~vIeD~ 153 (375)
T PRK11706 82 VSTANAFVLRGAKIVFVDIRPD-TMNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIMALAKKH-NLFVVEDA 153 (375)
T ss_pred HHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHHHHHHHc-CCEEEEEC
Confidence 9999999999999999999754 47799999999998899998865 47998877 78899999999 99999999
Q ss_pred cccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcCHHHHHHHHHHhhhc---------------
Q 012124 269 IYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------------- 330 (470)
Q Consensus 269 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--------------- 330 (470)
+|+.+. +.+. ++..+. .+.+.||+ |.++ +|.+.++++.++++.++++..+...
T Consensus 154 a~a~g~~~~~~---~~g~~~-----~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 224 (375)
T PRK11706 154 AQGVMSTYKGR---ALGTIG-----HIGCFSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYT 224 (375)
T ss_pred ccccccccCCe---eeecCc-----CEEEEeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcce
Confidence 998765 3322 222221 13333443 9997 7888888988999998877665321
Q ss_pred --cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC--C-Ceec-CCC----ceEEEeeeccCccC
Q 012124 331 --TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--G-VKMS-EPQ----GAFYLFIDFSTYYG 400 (470)
Q Consensus 331 --~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g-~~~~-~~~----~g~~~~~~~~~~~~ 400 (470)
..+.+...+...++.+.. .-+.+++..++.+++.+.+.+.|.+++ + +.+. .+. ...++|+.+++..
T Consensus 225 ~~~~g~~~~~~~~~aa~~~~---ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 300 (375)
T PRK11706 225 WVDIGSSYLPSELQAAYLWA---QLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE- 300 (375)
T ss_pred eeecccccCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC-
Confidence 112332222222222111 023345555555666667777777664 2 3322 121 2334566665431
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCC----C------CC-----C-------CCcEEEEeec--CHHHHHHHHHH
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGD----A------FG-----D-------DTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~----~------f~-----~-------~~~iRls~~~--~~~~i~~~l~~ 456 (470)
+..++.+.|.++ ||.+.... . ++ . ...+-|-+.. ++++++..++.
T Consensus 301 ----------~r~~l~~~L~~~-gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~ 369 (375)
T PRK11706 301 ----------DRSALINFLKEA-GIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDT 369 (375)
T ss_pred ----------CHHHHHHHHHHC-CCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHH
Confidence 577888888765 89765321 0 00 0 1235555554 78999999998
Q ss_pred HHHHH
Q 012124 457 IKKGL 461 (470)
Q Consensus 457 l~~~l 461 (470)
|++++
T Consensus 370 i~~~~ 374 (375)
T PRK11706 370 ILEFF 374 (375)
T ss_pred HHHHh
Confidence 88764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-22 Score=196.38 Aligned_cols=324 Identities=17% Similarity=0.149 Sum_probs=218.9
Q ss_pred CCeEEccCCC-CCCCChHHHHHHHHHHHHcCCCCC---CCCcCc----HHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 94 VSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRY---TPNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 94 ~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~y---~~~~g~----~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+++++|++++ ..+..++.++++..+++.+.-.+. .-..|. .+|.+.|++++ | .+..++.+++-.
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~----g----~e~all~sSGy~ 173 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK----K----KEDCLVCPTGFA 173 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH----C----CCcEEEECChHH
Confidence 4789999887 566778999999998887621111 123455 55666666665 3 245555555555
Q ss_pred HHHHHHHHh--------------cCCCCeEEEcCCCCCChHHHHHHc----CCEEEEecCcCCCCCccCHHhHhhhccC-
Q 012124 166 SILQAVLAV--------------CSPGDEVIIPAPFWVSYPEMARIA----DATPVILPTRISENFLLDPKVLESKLTE- 226 (470)
Q Consensus 166 al~~~~~~l--------------~~~gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~~~l~~~l~~- 226 (470)
+...++.+| ..++|.|+.+.-+|.+....++.. +++++.++. -|++.|++.++.
T Consensus 174 AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L~~~ 246 (476)
T PLN02955 174 ANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLLSSC 246 (476)
T ss_pred HHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHHHhC
Confidence 555566665 245678888888888888888876 577777774 288888888742
Q ss_pred --CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 227 --KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 227 --~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+.++|++...-++.|...+ +++|.++|++| |+++|+||+|+.+.++.........+.-..+..|+++||||.+|
T Consensus 247 ~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~-ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G 322 (476)
T PLN02955 247 KMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKY-GFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAG 322 (476)
T ss_pred CCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchh
Confidence 3445555555889999999 88888899999 99999999999888765433333333222477899999999998
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCC--ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
..| ||+++++++++.+......+.+++ ++....++.+.++.. ..-...++.++++.+++.+.+ |+.+
T Consensus 323 ~~G---Gfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~----~~~~~~r~~L~~n~~~fr~~~----G~~~ 391 (476)
T PLN02955 323 CHG---GFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA----RKEKWRRKAIWERVKEFKALS----GVDI 391 (476)
T ss_pred ccC---ceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHhc----CCCC
Confidence 666 999999999998886655544433 333333444444431 111235566777777777642 5543
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~--~~~~i~~~l~~l 457 (470)
.+.+ +.+.+.+.. ...++.++|+++ ||.+.+..+...+ ..+|++++. ++++|+++++.|
T Consensus 392 ---~sPI-~pI~ig~~~-----------~a~~~~~~L~~~-Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L 455 (476)
T PLN02955 392 ---SSPI-ISLVVGNQE-----------KALKASRYLLKS-GFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITAL 455 (476)
T ss_pred ---CCCE-EEEEeCCHH-----------HHHHHHHHHHHC-CCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHH
Confidence 1223 334444321 456778888876 9999875543332 369999986 999999999999
Q ss_pred HHHHHh
Q 012124 458 KKGLLT 463 (470)
Q Consensus 458 ~~~l~~ 463 (470)
.++.+.
T Consensus 456 ~~~~~~ 461 (476)
T PLN02955 456 SSCLDF 461 (476)
T ss_pred HHHHhh
Confidence 988754
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=202.81 Aligned_cols=360 Identities=17% Similarity=0.116 Sum_probs=241.8
Q ss_pred HHHHHHHHHHHhcCCC--eEEccCCCCCCCChHHHHHHHHHHH-HcCCCCC---CCCcCcHHHHHHHHHHHHHHcCCCCC
Q 012124 80 VAITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGINAI-REGFTRY---TPNAGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~i~l~~g~~~~~~~~~~~~a~~~~~-~~~~~~y---~~~~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
.++.+....+.+++.. ...++.|.++...|+.+.+++.+.. -...+.| ...+|..+++..+++++.+.+|.+
T Consensus 52 ~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-- 129 (481)
T PRK04366 52 LEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-- 129 (481)
T ss_pred HHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--
Confidence 3445555556555432 2447788888888888888887752 2245667 356799999999999999999963
Q ss_pred CCcEEEecChHHHHHHH--HH-HhcCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 154 PDQILVSNGAKQSILQA--VL-AVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~--~~-~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
...+..++|+++.+..+ ++ .+.++|| +|++++|.|+.+...++..|++++.++++. ++.+|++.|++++++
T Consensus 130 ~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~--~~~~D~e~L~~~i~~ 207 (481)
T PRK04366 130 AVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE--DGLVDLEALKAAVGE 207 (481)
T ss_pred ceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC--CCCcCHHHHHhhccc
Confidence 44566667777666533 22 3456776 999999999999999999999999999853 456999999999998
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++|+ |||.. ..++++|+++|+++ |+++|+|.++..-..+ . .+.. ..+-.++++|.+|.++.|
T Consensus 208 ~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~-gal~iVD~a~~~~~~g-~--~~~~----~~GaD~~~~~~hK~l~~P 276 (481)
T PRK04366 208 DTAALMLTNPN-TLGLF--ERNILEIAEIVHEA-GGLLYYDGANLNAILG-K--ARPG----DMGFDVVHLNLHKTFSTP 276 (481)
T ss_pred CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHc-CCEEEEEecChhhhcc-c--CCcc----ccCCCEEEEechhhcCCC
Confidence 99999999988 99964 34599999999999 9999999998532111 1 1111 235568999999998643
Q ss_pred ----cceeeEEEcCHHHHHHHHHH-------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 307 ----GWRLGYIAGPKHFVAACNKI-------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 307 ----G~r~G~~~~~~~~~~~l~~~-------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
|..+|++.+.+++.+.+... ++.-.+..+.....++..++.. .+.+.++++.++.
T Consensus 277 ~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~--~G~~Gl~~~a~~~ 354 (481)
T PRK04366 277 HGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS--LGAEGLREVSEDA 354 (481)
T ss_pred CCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 44578888887776655200 0001111122333344444432 1245567777777
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--CCCCcEEE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCIRI 441 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--~~~~~iRl 441 (470)
..+.+++.+.|.++.++.+..+...- +.++++.. . .. ..+..++.++|.++ ||.+. +..| ...+.+|+
T Consensus 355 ~~~a~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~-~--~~----g~~~~~v~~~L~~~-Gi~~~-~~~~p~~~~~~l~i 424 (481)
T PRK04366 355 VLNANYLKARLKDIYDLPYDRPCMHE-FVLSGKKL-K--ET----GVRTLDIAKRLLDY-GFHPP-TIYFPLIVPEALMI 424 (481)
T ss_pred HHHHHHHHHHhHhhCcccCCCCeeEE-EEEECccc-c--cc----CCCHHHHHHHHHHC-CccCC-ccccccccCCeEEE
Confidence 77888899888875233321111111 22333210 0 00 01678899988765 88754 2222 12568999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 442 SYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 442 s~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++. ++++|+.+++.|+++.++...
T Consensus 425 s~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 425 EPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9975 899999999999999887654
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-23 Score=201.72 Aligned_cols=308 Identities=17% Similarity=0.160 Sum_probs=212.7
Q ss_pred CChHHHHHHHHHHHHcCCCC-C--CC--CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh----cCC
Q 012124 107 DTPVLIAEAGINAIREGFTR-Y--TP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV----CSP 177 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~-y--~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l----~~~ 177 (470)
+.|+.+.+++.+.+...... . .. .....++.+.+.+.+.+.+| +++++|++|+|+++++++++..+ .++
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~ 87 (364)
T PLN02651 10 PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIG--ADPKEIIFTSGATESNNLAIKGVMHFYKDK 87 (364)
T ss_pred CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 35778888888876532110 0 00 01112334444444444456 46789999999999988877654 478
Q ss_pred CCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 178 GDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 178 gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
||+|++.+..|+++... ++..|++++.++++. ++.+|++.++++++++++++++++++||||..++ +++|.+
T Consensus 88 g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~~I~~ 162 (364)
T PLN02651 88 KKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP---VEEIGE 162 (364)
T ss_pred CCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc---HHHHHH
Confidence 99999998888765443 345799999999863 3458999999999999999999999999999999 889999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-------
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------- 327 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~------- 327 (470)
+|+++ |+++++|.+++.. ..+..+.. .+-.+++.|..|.+| | ..+|++++.++....+....
T Consensus 163 ~~~~~-g~~~~vD~a~~~g----~~~~~~~~----~~~D~~~~s~hK~~g-p-~G~g~l~v~~~~~~~l~p~~~g~~~~~ 231 (364)
T PLN02651 163 LCREK-KVLFHTDAAQAVG----KIPVDVDD----LGVDLMSISGHKIYG-P-KGVGALYVRRRPRVRLEPLMSGGGQER 231 (364)
T ss_pred HHHHc-CCEEEEEcchhhC----CcccCccc----CCCCEEEechhhhCC-C-CceEEEEEcCCCCCCCCccccCCCccC
Confidence 99999 9999999999752 11222222 245688999999654 3 34899988776544332111
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCC------ceEEEeeeccCccC
Q 012124 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQ------GAFYLFIDFSTYYG 400 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~------~g~~~~~~~~~~~~ 400 (470)
.....+++.....++.++|+. ..+..++++++.++.++++.+.|.+ ++|+++..|. .++ +.+.+++.
T Consensus 232 ~~~~GT~~~~~~~~l~~al~~---~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i-~~~~~~~~-- 305 (364)
T PLN02651 232 GRRSGTENTPLVVGLGAACEL---AMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGT-LNLSFAYV-- 305 (364)
T ss_pred CccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCE-EEEEeCCC--
Confidence 112334566666666666664 2334577778888889999999875 6788877641 223 44456543
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHH
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQ 451 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~ 451 (470)
+..++.+.|. + |.+..|..+.. .+.+|+|++. +++||+
T Consensus 306 ----------~~~~~~~~L~-~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 306 ----------EGESLLMGLK-E--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred ----------CHHHHHHHhC-C--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 6778888774 3 99988875422 2689999997 777764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=197.84 Aligned_cols=217 Identities=16% Similarity=0.202 Sum_probs=167.9
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 204 (470)
..+-..+|++.++++. | .+..++++++++|+..++.+++++||+|+++.++|.+.... ++..|+++..
T Consensus 38 ~~p~~~~le~~la~l~----g----~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 38 GNPTVDALEKKLAALE----G----GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred CChhHHHHHHHHHHHH----C----CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEE
Confidence 3444567777777764 3 24677888889999999999999999999999999887643 4467888888
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++.+ |++.+++++++++++|++.+|+||+|.+.+ +++|+++|+++ |+++|+|++|+...+. .+
T Consensus 110 v~~~-------d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~-g~~livD~t~~~~~~~----~~-- 172 (369)
T cd00614 110 VDPD-------DPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEH-GALLVVDNTFATPYLQ----RP-- 172 (369)
T ss_pred eCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcchhcC----Ch--
Confidence 8752 689999999889999999999999999999 88999999999 9999999999764321 11
Q ss_pred ccCCCCCceEEEeccCccccccc-ceeeEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
+. .+..+++.|++|.++.+| .+.||+++++ ++++.+.........+.+++.+.++...++. +....++
T Consensus 173 -~~--~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~~r~~~ 242 (369)
T cd00614 173 -LE--LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT-------LPLRMER 242 (369)
T ss_pred -hh--hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-------HHHHHHH
Confidence 11 245689999999997455 7899999977 8888888777666667777766555444432 3334556
Q ss_pred HHHHHHHHHHHhccCCCC
Q 012124 363 FRERRDFLVKSFGELEGV 380 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~ 380 (470)
..++.+.+.+.|++.|++
T Consensus 243 ~~~na~~la~~L~~~~~v 260 (369)
T cd00614 243 HSENALKVAEFLEKHPKV 260 (369)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 677888888888887655
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=190.83 Aligned_cols=324 Identities=21% Similarity=0.212 Sum_probs=235.4
Q ss_pred ChHHHHHHHHHHHHcC------CCCCCC--CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH--hc--
Q 012124 108 TPVLIAEAGINAIREG------FTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA--VC-- 175 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~------~~~y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~--l~-- 175 (470)
+.+.+++++...+... .+.|+- .....+-|+.||+.+ | +++++|++|+|++++.++++.. ..
T Consensus 13 ~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~ll----g--a~~~eIiFTSG~TEsnNlaI~g~~~a~~ 86 (386)
T COG1104 13 VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLL----G--ADPEEIIFTSGATESNNLAIKGAALAYR 86 (386)
T ss_pred CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEecCCcHHHHHHHHhhHHhhh
Confidence 3577888888877653 122210 122345666666665 4 5779999999999999999987 22
Q ss_pred --CCCCeEEEcCCCCCChHHHHHHc---CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 176 --SPGDEVIIPAPFWVSYPEMARIA---DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 176 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+.|..|++..-.++...+.++.+ |.++.++|++.++ .+|++.|++++++++.+|.+...||.||++.| ++
T Consensus 87 ~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G--~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---I~ 161 (386)
T COG1104 87 NAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG--LVDLEQLEEALRPDTILVSIMHANNETGTIQP---IA 161 (386)
T ss_pred cccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCC--eEcHHHHHHhcCCCceEEEEEecccCeeeccc---HH
Confidence 25789999988888887766554 9999999998644 59999999999999999999999999999999 99
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH--HH---H
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA--CN---K 325 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~--l~---~ 325 (470)
+|.++|+++ ++++++|.++.. |+-+..+..+ .-.+...|-+|..|..| +|+++..+.+.-. +. .
T Consensus 162 ei~~i~k~~-~i~fHvDAvQa~----Gkipi~~~~~----~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQ 230 (386)
T COG1104 162 EIGEICKER-GILFHVDAVQAV----GKIPIDLEEL----GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQ 230 (386)
T ss_pred HHHHHHHHc-CCeEEEehhhhc----Cceecccccc----CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcC
Confidence 999999999 999999999875 3333333332 23355667789999677 7888764432211 11 1
Q ss_pred HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCCeecCCC---ceEEEeeeccCccCC
Q 012124 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-EGVKMSEPQ---GAFYLFIDFSTYYGS 401 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~g~~~~~~~---~g~~~~~~~~~~~~~ 401 (470)
-+..-....+.+...+...+++. ..+.++....++...|+.+.+.|.+. |++.+.... -...+.+.+|..
T Consensus 231 E~g~RsGTenv~~Ivg~~~A~~~---a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv--- 304 (386)
T COG1104 231 ERGLRSGTENVPGIVGFGKAAEI---AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV--- 304 (386)
T ss_pred CCCCCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC---
Confidence 11122233455555666666664 35667778888899999999999875 777665432 234466677764
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC-------------------CcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-------------------TCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~-------------------~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
..+.+...| +..||.+..|+.+... +.||+||+. +++|++.+++.|.++
T Consensus 305 ---------~gE~ll~~L-~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~ 374 (386)
T COG1104 305 ---------EGESLLLAL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI 374 (386)
T ss_pred ---------cHHHHHHhc-cccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 566666654 5669999999987531 479999997 899999999999999
Q ss_pred HHhhCCCCC
Q 012124 461 LLTLRPGVP 469 (470)
Q Consensus 461 l~~~~~~~~ 469 (470)
++++++..|
T Consensus 375 i~~lr~~~~ 383 (386)
T COG1104 375 IKRLRELSP 383 (386)
T ss_pred HHHHhhhcc
Confidence 999876544
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-22 Score=196.63 Aligned_cols=216 Identities=16% Similarity=0.176 Sum_probs=160.7
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 205 (470)
.+...+|++.++++. |. +..++++++++++.+++.++++|||+|+++.|.|..... .++..|++++.+
T Consensus 64 ~p~~~~le~~lA~l~----g~----~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~v 135 (403)
T PRK07503 64 NPTLALLEQRMASLE----GG----EAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHV 135 (403)
T ss_pred CchHHHHHHHHHHHh----CC----CcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEe
Confidence 345678888888875 32 345667777889999999999999999999999976443 455689999888
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+++ |++.+++++++++++|++++|+||||.+.+ +++|+++|+++ |++||+|++|...... .++ .
T Consensus 136 d~~-------d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~-gi~lIvD~a~a~~~~~----~~l-~ 199 (403)
T PRK07503 136 DLT-------DPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGA-GAKVVVDNTYCTPYLQ----RPL-E 199 (403)
T ss_pred CCC-------CHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-h
Confidence 762 789999999889999999999999999998 88899999999 9999999999864321 122 1
Q ss_pred cCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH--hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
.+..+++.|+||.++.+| .+.||++.+++++++++.. +...+.+.+++.+..+...|+ .+....++
T Consensus 200 ----~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-------tl~~r~~~ 268 (403)
T PRK07503 200 ----LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-------TLALRMDR 268 (403)
T ss_pred ----hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-------hHHHHHHH
Confidence 233499999999998555 7889999999988888633 444456667776655444333 23333333
Q ss_pred HHHHHHHHHHHhccCCCC
Q 012124 363 FRERRDFLVKSFGELEGV 380 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~ 380 (470)
..++...+.+.|++.|.+
T Consensus 269 ~~~na~~~a~~L~~~p~v 286 (403)
T PRK07503 269 HCASAQAVAEWLARHPAV 286 (403)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 445666677777766554
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=196.67 Aligned_cols=217 Identities=15% Similarity=0.222 Sum_probs=158.8
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 204 (470)
+.+-..+|++.+++++ |. +..+++++++.++..++.+++++||+|++++|.|.++...+ ...|++++.
T Consensus 63 ~~p~~~~Le~~lA~l~----G~----~~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 134 (398)
T PRK07504 63 SNPTVDMFEKRMCALE----GA----EDARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTL 134 (398)
T ss_pred CCchHHHHHHHHHHHh----CC----CeeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEE
Confidence 3345678888888875 32 23345777788888888888899999999999999865543 457888888
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. +|++.+++++++++|+|++++|+||||.+++ +++|.++|+++ |+++|+|++|....+. .++
T Consensus 135 vd~-------~d~e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~-gi~lvvD~a~a~~~~~----~~~- 198 (398)
T PRK07504 135 VDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQA-GAKLVVDNVFATPLFQ----KPL- 198 (398)
T ss_pred ECC-------CCHHHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHc-CCEEEEECCccccccC----Cch-
Confidence 751 6999999999999999999999999999999 88889999999 9999999999864332 111
Q ss_pred ccCCCCCceEEEeccCcccccccceee-EEEcCHHHHH-HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
. .+..+++.|++|.++.+|.++| +++++++++. .+...........+++.+..+...|+ .+..+.++
T Consensus 199 ~----~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~-------tl~~R~~~ 267 (398)
T PRK07504 199 E----LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLE-------TLPVRVRQ 267 (398)
T ss_pred h----hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc-------hHHHHHHH
Confidence 1 2456899999999987899985 6667777665 34444444444556555444444333 23444444
Q ss_pred HHHHHHHHHHHhccCCCC
Q 012124 363 FRERRDFLVKSFGELEGV 380 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~ 380 (470)
..++...+.+.|++.|++
T Consensus 268 ~~~na~~la~~L~~~p~v 285 (398)
T PRK07504 268 QTESAAAIADFLAGHPKV 285 (398)
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 456777777778776654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-22 Score=193.68 Aligned_cols=217 Identities=14% Similarity=0.155 Sum_probs=164.3
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 204 (470)
+.+....|+++++++. ..+++++++|+++++.+++.+++++||+|++++|+|.+....+ ...|.+++.
T Consensus 51 ~npt~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~ 122 (388)
T PRK08861 51 GNPNRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQF 122 (388)
T ss_pred CCchHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEE
Confidence 3445678888888885 2479999999999999999999999999999999998654433 335778777
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ ++++|+|++|....+. .++
T Consensus 123 vd~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~-gi~vIvDea~~~~~~~----~pl- 186 (388)
T PRK08861 123 VDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAV-GALVAVDNTFLTPVLQ----KPL- 186 (388)
T ss_pred ECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccccC----CCc-
Confidence 753 4889999999889999999999999999999 77889999999 9999999999864322 111
Q ss_pred ccCCCCCceEEEeccCccccc-ccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAM-TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
. .+-.+++.|++|.++- .+...|++++ ++++.+.+...+.....+.+++....+..-|+. +.-+.++
T Consensus 187 ~----~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------l~lR~~~ 255 (388)
T PRK08861 187 E----LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-------LGARMRV 255 (388)
T ss_pred c----cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-------HHHHHHH
Confidence 1 2344899999999853 3467899887 456777787777777777788775544443332 3334444
Q ss_pred HHHHHHHHHHHhccCCCC
Q 012124 363 FRERRDFLVKSFGELEGV 380 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~ 380 (470)
..++...+.+.|++.|.+
T Consensus 256 ~~~~a~~~a~~L~~~p~v 273 (388)
T PRK08861 256 HEESAQQILAYLQTQSLV 273 (388)
T ss_pred HHHHHHHHHHHHHhCCCe
Confidence 556666777777776554
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=196.81 Aligned_cols=349 Identities=13% Similarity=0.101 Sum_probs=227.1
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+.. ......+....+++.+....+. ...+.+++++++++|.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e 115 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTA-YQIVPYASYVTLAERINALAPI-DGPAKTAFFTTGAEAVE 115 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccccc-ccccCChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHHH
Confidence 67788999888532 333 7889999999987632111 1111234455666666543321 12368999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCCE-------------EEEecCcCCC-C--CccCHHhHhhhcc----
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADAT-------------PVILPTRISE-N--FLLDPKVLESKLT---- 225 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~~-------------~~~v~~~~~~-~--~~~d~~~l~~~l~---- 225 (470)
.+++... ....+|+...-+|++....+.. .|.. +..++..... + ..-+++.+++.+.
T Consensus 116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 195 (421)
T PRK06777 116 NAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIA 195 (421)
T ss_pred HHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccC
Confidence 9888642 2235788888899988754432 2210 1111211100 0 0113566777663
Q ss_pred -CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc
Q 012124 226 -EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
+++.+|++...++..|. +++.+.+++|.++|++| |+++|.||+|..+.+.+. ......++-..+ +.+|||.+
T Consensus 196 ~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~g~-~~~~~~~~~~pD----iv~~sK~l 269 (421)
T PRK06777 196 PDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH-GILLIADEVQTGFARTGK-LFAMEYYDVKPD----LITMAKSL 269 (421)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCccCCc-hhhhhhcCCCCC----EEeeehhh
Confidence 34566777656888885 68999999999999999 999999999998765543 222222221112 33799999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CC
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG 379 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g 379 (470)
+ +|+|+||+++++++++.+.......+++.+++.+.++.+.|+.- ++ +.+.++++++.+++.+.|+++ +.
T Consensus 270 ~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~ 343 (421)
T PRK06777 270 G-GGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI---AE--EKLCQRALILGAHLVEVLEKAKASCPA 343 (421)
T ss_pred c-CCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 99999999999999988775555677889999999999999741 21 345666666777777776653 43
Q ss_pred CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHH
Q 012124 380 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERI 457 (470)
Q Consensus 380 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l 457 (470)
+....+.+.|+. +.+..... +.....-...+.+.+++ .||.+.|+..|+ +++||++. .+++++++++++|
T Consensus 344 i~~vrg~G~~~~-i~~~~~~~----~~~~~~~~~~l~~~~~~-~Gv~i~~~~~~g--~~lr~~ppl~i~~~~i~~~~~~l 415 (421)
T PRK06777 344 IVDIRARGSMVA-VEFNDPQT----GKPSPEFTRQYQRQALE-EGLLLLSCGVHG--NVIRFLYPLTIPDAQFSKALNIL 415 (421)
T ss_pred eEEecCceEEEE-EEEecCcc----CCccHHHHHHHHHHHHh-CCeEEeecCCCC--CEEEEeCCCCCCHHHHHHHHHHH
Confidence 444566776654 33321100 00000012334444555 599999987664 69999986 4999999999999
Q ss_pred HHHHH
Q 012124 458 KKGLL 462 (470)
Q Consensus 458 ~~~l~ 462 (470)
++++.
T Consensus 416 ~~~l~ 420 (421)
T PRK06777 416 TRLLA 420 (421)
T ss_pred HHHHh
Confidence 98874
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=194.22 Aligned_cols=340 Identities=14% Similarity=0.130 Sum_probs=227.0
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+..+.+ .. -..+....+++.|....+ ..+.+++++++++|.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~-~~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e 112 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTS-NV-FYSAPPLKLAEELVTASR---FAEKVFLCNSGTEANE 112 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc-cc-cCCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHH
Confidence 6778999998853 3333 7889999999987532222 21 223455667777765332 1268999999999999
Q ss_pred HHHHHhcC--------CC-CeEEEcCCCCCChHHHHHH-cCCEEEE---ecCcCC---CCCccCHHhHhhhccCCceEEE
Q 012124 169 QAVLAVCS--------PG-DEVIIPAPFWVSYPEMARI-ADATPVI---LPTRIS---ENFLLDPKVLESKLTEKSRLLI 232 (470)
Q Consensus 169 ~~~~~l~~--------~g-d~Vlv~~p~y~~~~~~~~~-~g~~~~~---v~~~~~---~~~~~d~~~l~~~l~~~~~~i~ 232 (470)
.+++.... ++ .+|+....+|++....... .|..... -|.... -.+ .|++.+++.+.++..+.+
T Consensus 113 ~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~aav 191 (408)
T PRK04612 113 AAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAGGDVAAV 191 (408)
T ss_pred HHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCCCCEEEE
Confidence 99886431 22 4688889999987654332 2211110 011000 011 378899988865566677
Q ss_pred EcCCCCCcccCCC--HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee
Q 012124 233 LCSPSNPTGSVYP--KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 310 (470)
Q Consensus 233 l~~p~nPtG~~~s--~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~ 310 (470)
+..|.+++|.+++ .+.+++|.++|++| |+++|+||+|..+...+. .+. ... .+.+..+.||||.++ +|+|+
T Consensus 192 i~eP~~~~gg~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~---~~a-~~~-~~~~pdi~t~~K~l~-~G~pi 264 (408)
T PRK04612 192 MLEPIQGEGGVMPAAPGFLARVRALCDQH-DALLVLDEIQCGMGRTGT---LFA-HWQ-EQVTPDIVTLAKALG-GGFPI 264 (408)
T ss_pred EECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCc---hhh-hhh-cCCCCCEEEEcchhc-CCCce
Confidence 7777777776555 67999999999999 999999999998655442 121 111 355677899999998 99999
Q ss_pred eEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CC-eecCCC
Q 012124 311 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GV-KMSEPQ 386 (470)
Q Consensus 311 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~-~~~~~~ 386 (470)
||+++++++++.+.......+++.+++.+.++.+.|+.- ++ .++.+..+++.+++.+.|+++. ++ .... .
T Consensus 265 ga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vr-g 338 (408)
T PRK04612 265 GAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKL---AS--PQIAANVARQSAALRAGLEALNAEFGVFAQVR-G 338 (408)
T ss_pred EEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeee-c
Confidence 999999998888766555567788999999999988752 11 2344455555555555555431 22 2222 3
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
-|+++.+.+..... .....+++.+.++ ||.+.|.. .+.+|+.... +++++++++++|+++++++
T Consensus 339 ~Gl~~~i~~~~~~~---------~~a~~i~~~l~~~-Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~ 404 (408)
T PRK04612 339 RGLMLGAVLAPAHA---------GQAGAILDLAAEH-GLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALADY 404 (408)
T ss_pred cceEEEEEecCchh---------hHHHHHHHHHHHC-CeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 35556666642100 0355677776654 99987632 3789998665 9999999999999998765
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=193.45 Aligned_cols=217 Identities=13% Similarity=0.110 Sum_probs=159.9
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 204 (470)
+.....+|++.++++.+. +..++++++++++.+++.+++++||+|++++|+|.+....+. ..|+++..
T Consensus 59 ~~p~~~~Le~~lA~~~g~--------~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 59 GNPTRTALEEQLAALEGG--------AYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred CCccHHHHHHHHHHHhCC--------CceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 456788999999998631 233445566899999999999999999999999997654433 35787777
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. .|++.+++++++++++|++++|+||||...+ +++|+++|+++ |++||+|++|+..... .++.
T Consensus 131 ~d~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~-gi~lIvD~a~a~~~~~----~p~~ 195 (388)
T PRK07811 131 VDL-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDA-GAKVVVDNTFASPYLQ----QPLA 195 (388)
T ss_pred eCC-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHc-CCEEEEECCCCccccC----Cchh
Confidence 764 4899999999989999999999999999877 88999999999 9999999999864321 1221
Q ss_pred ccCCCCCceEEEeccCccccccc-ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
.+..+++.|++|.++.+| .+.||+++ ++++.+.+...+.......+++....+...|+. +..+.++
T Consensus 196 -----~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t-------l~~R~~~ 263 (388)
T PRK07811 196 -----LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT-------LAVRMDR 263 (388)
T ss_pred -----hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-------HHHHHHH
Confidence 133499999999997444 56799887 467777777666555555666654333333332 3344455
Q ss_pred HHHHHHHHHHHhccCCCC
Q 012124 363 FRERRDFLVKSFGELEGV 380 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~ 380 (470)
..++...+.+.|++.|++
T Consensus 264 ~~~na~~la~~L~~~p~v 281 (388)
T PRK07811 264 HSENAEAVAEFLAGHPEV 281 (388)
T ss_pred HHHHHHHHHHHHHhCCCe
Confidence 566777778888777665
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=192.20 Aligned_cols=312 Identities=16% Similarity=0.203 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
.+.-.+++.+.+..+...+ .....+|++.+++++. .++++.++|+++|+.+++.++ +++||+|++++|+
T Consensus 13 ~~~e~~~~~~~l~~~~~~~--g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~ 82 (379)
T PRK11658 13 GDEELAAVKEVLRSGWITT--GPKNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLT 82 (379)
T ss_pred CHHHHHHHHHHHHcCCccC--CHhHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCc
Confidence 3555778888887655444 3357899999999873 246888999999999999998 7999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+.+...+...|++++.++++.+ ++.+|++.+++++++++++|+ |.||+|...+ +++|.++|+++ |++||+|
T Consensus 83 ~~~~~~~~~~~G~~~v~vd~~~~-~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~-gi~vi~D 154 (379)
T PRK11658 83 WVSTLNMIVLLGATPVMVDVDRD-TLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERY-GIPVIED 154 (379)
T ss_pred HHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHc-CCeEEEE
Confidence 99999999999999999999753 466899999999998999887 6678999888 78899999999 9999999
Q ss_pred ccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhcc--------------
Q 012124 268 EIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT-------------- 331 (470)
Q Consensus 268 d~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~-------------- 331 (470)
++++. ..+.+. .+. . .+. .+.||++.-.+++.+.|+++.+ +++.++++..+....
T Consensus 155 ~a~a~g~~~~~~---~~g---~-~g~--~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 225 (379)
T PRK11658 155 AAHAVGTYYKGR---HIG---A-RGT--AIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAP 225 (379)
T ss_pred CCCccCCeECCe---ecC---C-CCC--EEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCC
Confidence 99984 223221 111 1 122 3556664444466678988864 788887776442210
Q ss_pred --------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEE-eeeccCc
Q 012124 332 --------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYL-FIDFSTY 398 (470)
Q Consensus 332 --------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~-~~~~~~~ 398 (470)
++.......|+..... .+.+++..++.++..+.+.+.|+++++..+..+. ..+++ .+.++..
T Consensus 226 ~~~~~~~G~n~~~~~l~AAl~~~q-----l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (379)
T PRK11658 226 QAEVLTPGYKYNLADINAAIALVQ-----LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEE 300 (379)
T ss_pred cceeeccccccCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCc
Confidence 0011111223333332 2345666666667777777888877533332221 12222 2344321
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC----C---CC-------C-------CCcEEEEeec--CHHHHHHHHH
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGD----A---FG-------D-------DTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~----~---f~-------~-------~~~iRls~~~--~~~~i~~~l~ 455 (470)
. ...+.+++.+.|.++ ||.+.+.. . |. . ...+.|.+.. ++++++..++
T Consensus 301 ~--------~~~~r~~~~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~ 371 (379)
T PRK11658 301 R--------CGISRDALMEALKER-GIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVIT 371 (379)
T ss_pred c--------ccCCHHHHHHHHHHC-CCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHH
Confidence 0 001567888888755 88654321 0 00 0 1235554444 8899999999
Q ss_pred HHHHHH
Q 012124 456 RIKKGL 461 (470)
Q Consensus 456 ~l~~~l 461 (470)
.|++++
T Consensus 372 ~i~~~~ 377 (379)
T PRK11658 372 ALQQIA 377 (379)
T ss_pred HHHHHH
Confidence 998875
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=193.34 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=159.7
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~ 206 (470)
+-..+|++.++++.. .+..+++++++.++.+++.+++++||+|+++.|.|..... .+...|++++.++
T Consensus 59 p~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd 130 (391)
T TIGR01328 59 PTVSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFIN 130 (391)
T ss_pred chHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEEC
Confidence 345678888888863 2346778888899999999999999999999998876543 3456899998887
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
++ |++.+++++++++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|...... .++
T Consensus 131 ~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~-gi~livD~a~a~~~~~----~~~--- 192 (391)
T TIGR01328 131 MA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQ-GVKVIVDNTFATPMLT----NPV--- 192 (391)
T ss_pred CC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCchhccC----Cch---
Confidence 63 789999999889999999999999999999 78889999999 9999999999853321 111
Q ss_pred CCCCCceEEEeccCcccccccce-eeEEEcCHHHHHHHHHHhh--hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r-~G~~~~~~~~~~~l~~~~~--~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
. .+..+++.|+||.++.+|.+ .|++++++++++.++.... ......+++....+...|+ .+..+.++.
T Consensus 193 ~--~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~-------tl~~r~~~~ 263 (391)
T TIGR01328 193 A--LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLK-------TLNIRMKRH 263 (391)
T ss_pred h--cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC-------cHHHHHHHH
Confidence 1 23448899999999878876 5788889998888875432 2233445554444433332 233345556
Q ss_pred HHHHHHHHHHhccCCCC
Q 012124 364 RERRDFLVKSFGELEGV 380 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~ 380 (470)
+++.+.+.+.|++.|++
T Consensus 264 ~~na~~la~~L~~~p~v 280 (391)
T TIGR01328 264 SENAMKVAEYLKSHPAV 280 (391)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 67777778888776655
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=192.56 Aligned_cols=216 Identities=20% Similarity=0.183 Sum_probs=160.6
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCC
Q 012124 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 200 (470)
Q Consensus 125 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~ 200 (470)
..| +.+...+|+++++++. . ++.++++++++++..++.+++++||+|++.+|+|.++...+ ...|+
T Consensus 46 ~ry-~~p~~~~Le~~lA~l~--------~-~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 46 GRA-SNPTWRALEAALGELE--------G-AEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred ECC-CCccHHHHHHHHHHHc--------C-CCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 445 6677899999999885 2 34555666668999999999999999999999998887654 45799
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
+++.++.+.+ .+ .+.+++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|... + +.
T Consensus 116 ~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~-g~~lvVD~t~~~~-~-~~-- 177 (366)
T PRK07582 116 TVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAA-GALLVVDNTTATP-L-GQ-- 177 (366)
T ss_pred EEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCCCCc-c-cc--
Confidence 9999987421 11 22357899999999999998887 89999999999 9999999998631 1 11
Q ss_pred ccccccCCCCCceEEEeccCccc-ccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
.++ .+ +..++++|++|.+ |.+|+|+||+++ ++++++.+...+.....+++++.+..+...++. +..
T Consensus 178 ~p~-~~----g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-------l~~ 245 (366)
T PRK07582 178 RPL-EL----GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-------LGL 245 (366)
T ss_pred Cch-hc----CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-------HHH
Confidence 122 12 2348899999998 446799999997 578888888877777777788776655555543 333
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q 012124 359 MVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
..++..++...+.+.|++.|.+
T Consensus 246 R~~~~~~na~~la~~L~~~p~v 267 (366)
T PRK07582 246 RFARQCANALAVAELLAGHPAV 267 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 3355567777788888877665
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=198.33 Aligned_cols=336 Identities=15% Similarity=0.118 Sum_probs=215.5
Q ss_pred cCCCeEEccCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||.+|...... ++.+.+++.+++.+..... ..-..+....+++.+.+..+ .+.++++++++++.+
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~--~~~~~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e 146 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSS--RAFYNDKFPEFAEYLTSMFG----YDMVLPMNTGAEGVE 146 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcc--cccCCHHHHHHHHHHHhhcC----CCeEEEeCChHHHHH
Confidence 57788999888654433 7999999999987632111 11122333445555544333 368999999999999
Q ss_pred HHHHHhcC--------C-CC-eEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVCS--------P-GD-EVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~~--------~-gd-~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++.... + ++ .|+...-+|++..........+ +..++. .|++.+++.++
T Consensus 147 ~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 219 (474)
T PLN02624 147 TAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDALEKIFE 219 (474)
T ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 99875432 1 32 5777788888875443332211 112221 26788888885
Q ss_pred ---CCceEEEEcCCCCCcccCCCHH-HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 226 ---EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG~~~s~~-~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+++++|++..++|++|.+++.+ .+++|.++|++| |+++|.||+|..+...+... .. ...+... -+.+|||
T Consensus 220 ~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~-gillI~DEv~tG~GrtG~~~-a~-~~~~i~p---Div~lsK 293 (474)
T PLN02624 220 EDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH-NVLMIADEIQTGLARTGKML-AC-DWEEVRP---DVVILGK 293 (474)
T ss_pred hCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcCcCcchh-hH-HhcCCCC---CEEEecc
Confidence 4577888888999999988766 599999999999 99999999998764444211 11 1111111 2444789
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----C
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----L 377 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 377 (470)
.++.+++++|++++++++++.+.......+++.+++.+.++.+.|+.- ++ ..+.+...++.+.+.+.|++ +
T Consensus 294 ~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l---~~--~~l~~~~~~~~~~l~~~L~~l~~~~ 368 (474)
T PLN02624 294 ALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVV---QD--EKLAERSAKLGQELRDQLQKIQKQF 368 (474)
T ss_pred cccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHH---Hh--chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 998555999999999988887765555556678999999998888641 11 11222223333333333322 2
Q ss_pred CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHH
Q 012124 378 EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAV 454 (470)
Q Consensus 378 ~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l 454 (470)
+. +....+.+.+ +.+.+..... ......++++.|.+ .||.+.|+. ++++||++. .++++|++++
T Consensus 369 ~~~i~~vrg~G~~-~~i~l~~~~~-------~~~~a~~~~~~L~e-~GV~v~p~~----~~~lR~~p~l~~t~e~id~~l 435 (474)
T PLN02624 369 PKLIKEVRGRGLL-NAVVLNSPKL-------GPVSAYDVCLKLKE-RGLLAKPTH----DTIIRLAPPLSISEDELQECS 435 (474)
T ss_pred CCceEEEEeeEEE-EEEEecCCCc-------ChHHHHHHHHHHHh-CCeEEecCC----CCEEEEECCccCCHHHHHHHH
Confidence 22 3323344444 4444532100 00135678888765 499998863 578999864 4999999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
++|++++++.
T Consensus 436 ~~L~~~l~~~ 445 (474)
T PLN02624 436 KALSDVLEHD 445 (474)
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=188.21 Aligned_cols=241 Identities=13% Similarity=0.136 Sum_probs=176.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeE
Q 012124 104 PDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181 (470)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~V 181 (470)
++++.++.+.++..... .....|+.. +...+|++.|+++. ..+++++++|+++|+..++.+++++||+|
T Consensus 33 ~~~~~~~~~~~~~~~~~-~~~~~Y~r~~npt~~~Le~~iA~le--------~~~~~~~~~sG~~Ai~~~l~all~~GD~V 103 (394)
T PRK09028 33 VVFDTVAEMRHAAKNRA-NGEMFYGRRGTPTHFAFQAAIVELE--------GGAGTALYPSGAAAISNALLSFLKAGDHL 103 (394)
T ss_pred cccCCHHHHHHHhccCc-cCCceecCCCCchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEE
Confidence 44555555555443321 122456552 34568999999874 22478999999999999999999999999
Q ss_pred EEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012124 182 IIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA 257 (470)
Q Consensus 182 lv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~ 257 (470)
++.+|.|.++...+ ...|+++..++.. +.+.+++++++++|+|++++|+||||.+.+ +++|+++|+
T Consensus 104 vv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-------~~e~l~~~l~~~TklV~lespsNPtg~v~d---l~~I~~la~ 173 (394)
T PRK09028 104 LMVDSCYEPTRDLCDKILKGFGIETTYYDPM-------IGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIAH 173 (394)
T ss_pred EEECCCcHHHHHHHHHhhhhcceEEEEECCC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHH
Confidence 99999998877543 4578888776531 557899999989999999999999988766 899999999
Q ss_pred hCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHHHHhhhccCCCCh
Q 012124 258 KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 336 (470)
Q Consensus 258 ~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~ 336 (470)
++ |+++|+|++|+.... ..+ + ..+-.+++.|.+|.+ |-.++-.|+++.++++.+.+.........+.++
T Consensus 174 ~~-g~~lvvD~t~a~p~~----~~P---l--~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p 243 (394)
T PRK09028 174 EH-DIVVMLDNTWASPIN----SRP---F--EMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSP 243 (394)
T ss_pred Hc-CCEEEEECCcccccc----CCc---c--ccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCH
Confidence 99 999999999975211 111 1 145679999999999 434567798888888877777666666667777
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 337 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 337 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
+....+..-|+ .+.-+.++..++...+.+.|++.|.+
T Consensus 244 ~~a~l~~rgl~-------TL~lR~~~~~~na~~la~~L~~~p~v 280 (394)
T PRK09028 244 DDVYLAMRGLR-------TLGVRLAQHEKNALKVANWLATRPEV 280 (394)
T ss_pred HHHHHHHcccC-------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 76554443333 34555566677777888888877654
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=176.13 Aligned_cols=370 Identities=14% Similarity=0.168 Sum_probs=259.3
Q ss_pred ccCCchHHHHHHHHHHHHh-cCCCeEEccCCCCCCCC-----hHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHHHHH
Q 012124 73 AVKPSKTVAITDQATALAQ-AGVSVIRLAAGEPDFDT-----PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~-----~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l 144 (470)
.++..++.++........+ ..+..++|+.|.--... -|.++++-.+...+ -.+.|-|..|.+.++++.++.+
T Consensus 8 ~I~~a~p~~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~ 87 (410)
T KOG1412|consen 8 NIPVAPPIEVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELL 87 (410)
T ss_pred CCccCChHHHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHh
Confidence 3344444444444333332 33456788888621111 23343333332222 2577999999999999999988
Q ss_pred HHHcCCCCCCCcE--EEecChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcC-CEEEEecCcCCCCCccCHHh
Q 012124 145 KEENGLSYTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD-ATPVILPTRISENFLLDPKV 219 (470)
Q Consensus 145 ~~~~g~~~~~~~i--~it~g~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g-~~~~~v~~~~~~~~~~d~~~ 219 (470)
-......+..+++ +-+-+++.|+.+....|. -+..+|.+..|+|.++..+++.+| ..+..++.-..+...+|++.
T Consensus 88 lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~ 167 (410)
T KOG1412|consen 88 LGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEG 167 (410)
T ss_pred cCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHH
Confidence 5333333445554 334566677776555442 245689999999999999999999 45666666555566789999
Q ss_pred HhhhccCCc-e-EEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc--ccccccCCCCCceE
Q 012124 220 LESKLTEKS-R-LLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFASLPGMWERTL 294 (470)
Q Consensus 220 l~~~l~~~~-~-~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~--~~~~~~~~~~~~~i 294 (470)
+...++..+ . .++++.+ |||||+..+.|+|++|++..++. +.+.+.|-+|++|.-+.... ..+..+.......+
T Consensus 168 ~Lsdl~~APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k-~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~f 246 (410)
T KOG1412|consen 168 FLSDLESAPEGSIIILHACAHNPTGMDPTREQWKQIADVIKSK-NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELF 246 (410)
T ss_pred HHHHHhhCCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhc-CceeeeehhhcccccCCccccHHHHHHHHhcCCeEE
Confidence 988886533 3 3445555 99999999999999999999998 99999999999987654322 22233333345689
Q ss_pred EEeccCcccccccceeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHH---HHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKAFR 364 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~---~~~~~~~~~ 364 (470)
++.||+|.+|+.+-|+|-+.. .+. +...+..+.+...++++..+..++...|+...+.++| ++.+..+.+
T Consensus 247 v~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~ 326 (410)
T KOG1412|consen 247 VCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIK 326 (410)
T ss_pred EEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997542 333 4455566666677789999999999999986654555 456667888
Q ss_pred HHHHHHHHHhccC--CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 365 ERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 365 ~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
+.|..|++.|..+ || |.-+..+.|||-+--+ . ...++.|.+++.|++.+-. |+
T Consensus 327 ~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGL---------------t-p~qV~~li~~h~vyLl~~G--------RI 382 (410)
T KOG1412|consen 327 KMRTALRDHLVALKTPGTWDHITQQIGMFSYTGL---------------T-PAQVDHLIENHKVYLLSDG--------RI 382 (410)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHhhccceeecCC---------------C-HHHHHHHHHhceEEEecCC--------cE
Confidence 8899999998876 55 6666678899877544 2 2445678888899888744 89
Q ss_pred Eeec-CHHHHHHHHHHHHHHHHhhCCC
Q 012124 442 SYAA-SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 442 s~~~-~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
+++. +...+|-..++|.+.++.++..
T Consensus 383 nisGLN~~NveyVAkAIde~Vr~~~~~ 409 (410)
T KOG1412|consen 383 NISGLNMKNVEYVAKAIDETVRAIKSN 409 (410)
T ss_pred eeeccccccHHHHHHHHHHHHHhhccC
Confidence 9998 7778888888888888776643
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-21 Score=191.49 Aligned_cols=355 Identities=11% Similarity=0.078 Sum_probs=221.2
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|. ..+.. ++.+.+++.+++.+.. .+.......+.+..+++.|....+. ..+.+++++++++|.+
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGsEAve 115 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLI-HYTPIYGFPVEPLLLAEKLIEIAPG--DNPKVSFGLSGSDAND 115 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhcc-CccccccCcHHHHHHHHHHHHhCCC--CCCEEEEcCCHHHHHH
Confidence 677899999885 33443 7889999999987632 2222223345666777777654332 2368999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHH-HHHcCC------------EEEEecCcCCC--CCc--------cCHHhHhhh
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEM-ARIADA------------TPVILPTRISE--NFL--------LDPKVLESK 223 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~-~~~~g~------------~~~~v~~~~~~--~~~--------~d~~~l~~~ 223 (470)
.+++... .....|+...-+|++.... +...|. .+..+|..... .+. .+++.+++.
T Consensus 116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (443)
T PRK08360 116 GAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEK 195 (443)
T ss_pred HHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHH
Confidence 9988642 2235788888888886532 222221 12222221100 000 123445555
Q ss_pred cc-----CCceEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEe
Q 012124 224 LT-----EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 297 (470)
Q Consensus 224 l~-----~~~~~i~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 297 (470)
+. +++++|++...+||+|.+++ .+.+++|.++|++| |+++|+||+|..|.+.+.. .....+.- ... +-
T Consensus 196 l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~G~~-~a~~~~~~-~pD---ii 269 (443)
T PRK08360 196 FEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH-GILLVVDEVQSGLGRTGKW-FAIEHFGV-EPD---II 269 (443)
T ss_pred HHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCccc-hhhhhcCC-CCC---EE
Confidence 52 46778877656899999887 66899999999999 9999999999987655432 11111211 122 23
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
+|||.++ +|+|+||+++++++++.+.......+++.+++.+.++.++|+.-.. ++.++++++.-...++.|.+...+.
T Consensus 270 tlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~ 347 (443)
T PRK08360 270 TLGKPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLGNYTKKRLEEMKKKH 347 (443)
T ss_pred Eeccccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899998 9999999999999999887655556778899999999888874111 1223333333232333333322233
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVE 455 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~ 455 (470)
+-+.... .-|+++-+++.+....... .......+.+.|+++ ||.+.+.. .+.+|++.. .++++++++++
T Consensus 348 ~~v~~vr-g~Gl~~gie~~~~~~~~~~---~~~~~~~~~~~l~~~-Gi~~~~~~----~~~lr~~P~l~~t~~~id~~~~ 418 (443)
T PRK08360 348 ELIGDVR-GIGLMIGVDLVKDRETKER---AYEEAAKVVWRAWEL-GLIVTFFS----GNVLRIQPPLTIEKEVLDEGLD 418 (443)
T ss_pred CCeeeee-ccceEEEEEEecCCcccCc---cHHHHHHHHHHHHHC-CeEEeecC----CCEEEEeCCCCCCHHHHHHHHH
Confidence 3222222 2355566665321000000 000234677777765 99886531 367999655 49999999999
Q ss_pred HHHHHHHhhCC
Q 012124 456 RIKKGLLTLRP 466 (470)
Q Consensus 456 ~l~~~l~~~~~ 466 (470)
+|.++++++..
T Consensus 419 ~l~~~l~~~~~ 429 (443)
T PRK08360 419 ILEEAIEDVEE 429 (443)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=188.85 Aligned_cols=329 Identities=15% Similarity=0.134 Sum_probs=203.5
Q ss_pred CeEEccCCC-CCCCChHHHHHHHHHHHHcC--------CCCCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 95 SVIRLAAGE-PDFDTPVLIAEAGINAIREG--------FTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 95 ~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~--------~~~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
.+++|++++ .++..++.+.+++.+++... .+..+ -..|..++.+.+.+.+.+.+|. ++.+++++|.
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~sG~ 81 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVPSGY 81 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEECChH
Confidence 568999887 56666777777776666542 11111 1123334444444444433453 2346777777
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 237 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~ 237 (470)
. ++..+...+.++||.|+++.-.|......++......+.++. .|++.|++.++. ++++|++++++
T Consensus 82 ~-a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~v~~v~ 153 (370)
T PRK05937 82 M-ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRH-------NDLDHLESLLESCRQRSFGRIFIFVCSVY 153 (370)
T ss_pred H-HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHhhhccCCCcEEEEEecCC
Confidence 5 444555556678888888787887777777665444444432 588999988852 34566678999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|+||...| +++|.++|+++ |+++++|++|+...++.........+.. .+..+.+.||||.+|..| +.++..+
T Consensus 154 s~~G~i~p---l~eI~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~-~~~~~~~~tlsK~~g~~G---~~vl~~~ 225 (370)
T PRK05937 154 SFKGTLAP---LEQIIALSKKY-HAHLIVDEAHAMGIFGDDGKGFCHSLGY-ENFYAVLVTYSKALGSMG---AALLSSS 225 (370)
T ss_pred CCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCchHHhhCC-CCCcEEEEechhhhhcCc---eEEEcCH
Confidence 99999999 88899999999 9999999999864443221111111111 122367899999998556 3345556
Q ss_pred HHHHHHHHHhh--hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec
Q 012124 318 HFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 318 ~~~~~l~~~~~--~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~ 395 (470)
++...+..... .+..+.+++...++.++++. ..+.....++++++.++++.+.|... + +. ....+.+
T Consensus 226 ~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~---l~~~~~~~~~~l~~l~~~l~~~l~~~-~-----~~--~~~~i~~ 294 (370)
T PRK05937 226 EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF---LSQEGELARKQLFRLKEYFAQKFSSA-A-----PG--CVQPIFL 294 (370)
T ss_pred HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHHHHHhcCCC-C-----CC--CEEEEEe
Confidence 66555543211 22334566666555555543 11112345566777777887777542 1 00 0111234
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
+.. +...+.+.|.++ ||.+... .+...+++|++++. +++|++.+++.|+++++++...
T Consensus 295 ~~~------------~~~~~~~~L~~~-gi~v~~~-~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~ 354 (370)
T PRK05937 295 PGI------------SEQELYSKLVET-GIRVGVV-CFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQKN 354 (370)
T ss_pred CCh------------hHHHHHHHHHHC-CeeEEee-CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 432 456777776555 9988642 22335689999986 9999999999999999887644
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=191.93 Aligned_cols=351 Identities=13% Similarity=0.130 Sum_probs=223.4
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+ +.......+....+++.+.+..+.. ..+.+++++++++|.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~e 115 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH-TCHQVVPYENYVRLAERLNALVPGD-FAKKTIFVTTGAEAVE 115 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccC-cccCccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHH
Confidence 67789999988643 333 78899999999876321 1111122345555666666543311 1268999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCC-------------EEEEecCcCCCCCccC----HHhHhhhcc---
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISENFLLD----PKVLESKLT--- 225 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~d----~~~l~~~l~--- 225 (470)
.+++... ....+|+...-+|++....... .|. .++.+|...+. .+.+ ++.+++.+.
T Consensus 116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~~ 194 (425)
T PRK07495 116 NAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKADV 194 (425)
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhcc
Confidence 9888642 2236788888899887543222 111 22334432211 1122 444566653
Q ss_pred --CCceEEEEcC-CCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 226 --EKSRLLILCS-PSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 --~~~~~i~l~~-p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+++.+|++.. .+| +| .++|.+.+++|.++|++| |+++|+||+|..|...+. +..+.. .+.+..+.+|||
T Consensus 195 ~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~----~~a~~~-~gv~pDi~tlsK 267 (425)
T PRK07495 195 DPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQH-GILLIADEVQTGFARTGK----LFAMEH-HEVAADLTTMAK 267 (425)
T ss_pred CCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHc-CCEEEEechhhcCCcCCC----ceeecc-cCCCCCEEeehh
Confidence 3566776643 356 88 568999999999999999 999999999998755442 122222 244556899999
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
.++ +|+|+|++++++++++.+.......+++.+++.+.++.+.++. +.+ .++++++.+.++++.+.+.+ ++|
T Consensus 268 ~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~~l~~---~~~ 342 (425)
T PRK07495 268 GLA-GGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL-CERANQLGNRLKQRLASLRE---TVP 342 (425)
T ss_pred hhc-CCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHh---hCC
Confidence 998 9999999999999988876545556778999999966666553 221 23344444444444433332 233
Q ss_pred CC-eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012124 379 GV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 379 g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~ 455 (470)
.+ .+.. .|+++|+++.+.-.... .......+.+.++++ ||.+.+.... .+.+||.... ++++++++++
T Consensus 343 ~i~~vrG--~Gl~~~iel~~~~~~~~----~~~~~~~~~~~~~~~-Gvl~~~~g~~--~~~~r~~Ppl~it~~~id~~~~ 413 (425)
T PRK07495 343 EIADIRG--PGFMNAVEFNDADSGLP----SAEFANRVRLKALEK-GLILLTCGVH--GNVIRFLAPITIQDDVFAEALD 413 (425)
T ss_pred Ceeeeec--CceEEEEEEecCCCCCc----cHHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEeCCCccCHHHHHHHHH
Confidence 32 2322 38889999853200000 000134566666655 8988663221 3789998664 9999999999
Q ss_pred HHHHHHHhhCC
Q 012124 456 RIKKGLLTLRP 466 (470)
Q Consensus 456 ~l~~~l~~~~~ 466 (470)
+|++++++++.
T Consensus 414 ~l~~~l~~~~~ 424 (425)
T PRK07495 414 ILEASILEASA 424 (425)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=188.32 Aligned_cols=299 Identities=17% Similarity=0.221 Sum_probs=206.7
Q ss_pred HHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCCCCChH
Q 012124 114 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYP 192 (470)
Q Consensus 114 ~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~ 192 (470)
+++.+.+..+.. .......++++.+++++. .+++++++|+++++..++.++ .++||+|+++.++|..+.
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~ 72 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA 72 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH
Confidence 455666665443 234467889999998863 246888889999999999998 689999999999999999
Q ss_pred HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc
Q 012124 193 EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272 (470)
Q Consensus 193 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~ 272 (470)
..+...|++++.++++. +++.+|++.+++.+++++++|+++ ||+|...+ +++|.++|+++ +++||+|++++.
T Consensus 73 ~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~-~i~li~D~a~~~ 144 (352)
T cd00616 73 NAILLLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPV---HLYGNPAD---MDAIMAIAKRH-GLPVIEDAAQAL 144 (352)
T ss_pred HHHHHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCC---HHHHHHHHHHc-CCeEEEECCCCC
Confidence 99999999999999864 356789999999998889988875 47999888 78888999999 999999999975
Q ss_pred cccCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhhhcc---------------CCC
Q 012124 273 IIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT---------------SGA 334 (470)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~---------------~~~ 334 (470)
...... .. +.. ...+.+.||+ |.++ +.+.|+++.+ +++.+.+........ ...
T Consensus 145 g~~~~~--~~---~~~--~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd00616 145 GATYKG--RK---VGT--FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRL 215 (352)
T ss_pred CCeECC--EE---ccc--CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCc
Confidence 321110 01 111 1235677776 8874 3356888775 578777765433211 112
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc-----eEEEeeeccC--ccCCcccCCC
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-----AFYLFIDFST--YYGSEAEGFG 407 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-----g~~~~~~~~~--~~~~~~~~~~ 407 (470)
+.+...++... .+.+++..++.+++.+++.+.|.+++|+++..+.. ...+.+.+++ ..
T Consensus 216 ~~~~aa~~~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 280 (352)
T cd00616 216 SEIQAAIGLAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGE-------- 280 (352)
T ss_pred CHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCC--------
Confidence 22222222221 23356666777888889999999888887754322 2334445543 21
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCC----------------C-------CCcEEEEeec--CHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFG----------------D-------DTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~----------------~-------~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
+..++.+.|.++ ||.+....... . .+.+|+++.. ++++|+..++.|+
T Consensus 281 ---~~~~v~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 281 ---SRDELIEALKEA-GIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ---CHHHHHHHHHHC-CCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 678898888665 88654211100 0 1579999986 9999999888763
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=188.62 Aligned_cols=216 Identities=15% Similarity=0.208 Sum_probs=164.8
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~ 206 (470)
.-..+|++.++++. | .+++++++++++++..++.+++++||+|+++.+.|.+.. ..++..|++++.++
T Consensus 54 p~~~~le~~la~l~----g----~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~ 125 (380)
T TIGR01325 54 PTVAAFEERIAALE----G----AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVD 125 (380)
T ss_pred chHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEEC
Confidence 34677888888764 3 257888999999999999999999999999999887643 35667899998887
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.+ |++.+++++++++++|++++|+||+|...+ +++|.++|+++ |+++|+|++|....+.. ++ .
T Consensus 126 ~~-------d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~-gi~livD~a~~~~~~~~----pl-~- 188 (380)
T TIGR01325 126 PT-------DLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAI-GALLVVDNVFATPVLQQ----PL-K- 188 (380)
T ss_pred CC-------CHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-h-
Confidence 62 789999999889999999999999999998 88899999999 99999999998643221 11 1
Q ss_pred CCCCCceEEEeccCccccccccee-eEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+..|++.|++|.++.+|.++ |++++++++++.+...........+++...+ ++.. -+.+....++..+
T Consensus 189 ---~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~---~l~~----l~tl~~r~~~~~~ 258 (380)
T TIGR01325 189 ---LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWV---LLKG----LETLSLRMQKQFD 258 (380)
T ss_pred ---hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHH---HHhc----cCcHHHHHHHHHH
Confidence 234588899999997677776 7888899998888876655555555554333 3332 2334445566677
Q ss_pred HHHHHHHHhccCCCCe
Q 012124 366 RRDFLVKSFGELEGVK 381 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~~ 381 (470)
+++.+.+.|++.|+++
T Consensus 259 ~a~~la~~L~~~p~v~ 274 (380)
T TIGR01325 259 SALAIAEWLQAQPQVQ 274 (380)
T ss_pred HHHHHHHHHHcCCCcc
Confidence 7778888888776653
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=193.69 Aligned_cols=332 Identities=15% Similarity=0.135 Sum_probs=220.8
Q ss_pred cCCCeEEccCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||.+|...... ++.+.+++.+++.+..... + ....+....+++.+.+.+| .+.+++++++++|..
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~-~-~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~A~e 108 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSS-R-AFYNDVFGEFAEYVTKLFG----YDKVLPMNTGAEAVE 108 (401)
T ss_pred CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccc-c-ccCCHHHHHHHHHHHhhcC----CCEEEEeCccHHHHH
Confidence 57788999988655443 7899999998886522111 1 1123444555555555444 358999999999999
Q ss_pred HHHHHhc---------CC-CCeEEEcCCCCCCh-HHHHHHcCC------------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVC---------SP-GDEVIIPAPFWVSY-PEMARIADA------------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~---------~~-gd~Vlv~~p~y~~~-~~~~~~~g~------------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++.+. .+ .+.|+...-+|++. ...+...|. .++.++. .|++.|++.++
T Consensus 109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~ 181 (401)
T TIGR01885 109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALE 181 (401)
T ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 9998752 13 36777788888864 333333221 1233332 27888888874
Q ss_pred ---CCceEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 226 ---EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+++.+|++...++++|...+ .+.+++|.++|++| ++++|.||+|..+.+.+.. ... ...+....++ +|||
T Consensus 182 ~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~g~~G~~-~~~-~~~~~~~di~---~~gK 255 (401)
T TIGR01885 182 DHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH-NVLLIADEIQTGLGRTGKL-LCV-DHENVKPDIV---LLGK 255 (401)
T ss_pred hcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchh-hHH-hhcCCCCCEE---Eeec
Confidence 35667777778999999886 55799999999999 9999999999876554431 111 1221112222 4789
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC-CC
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GV 380 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~ 380 (470)
.++..++|+||+++++++++.+.......+++.+++.+.++.++|+.- ++ ..+.++.++..+++.+.|++++ ++
T Consensus 256 ~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~~~~~~~L~~l~~~~ 330 (401)
T TIGR01885 256 ALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKLGEIFRDQLKKLPKPI 330 (401)
T ss_pred cccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhccCCc
Confidence 998555899999999999888765333346677899999998888742 21 1234556666788888888762 22
Q ss_pred -eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHH
Q 012124 381 -KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERI 457 (470)
Q Consensus 381 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l 457 (470)
....+.+.+ ..+.++.... ..+..+++++|.++ ||.+.|+. ++.+|++.+ .++++|++++++|
T Consensus 331 ~~~~~g~g~~-~~i~~~~~~~--------~~~~~~l~~~l~~~-Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~~l 396 (401)
T TIGR01885 331 ITEVRGRGLL-NAIVIDESKT--------GRTAWDLCLKLKEK-GLLAKPTH----GNIIRLAPPLVITEEQLDEGLEII 396 (401)
T ss_pred eeEEeecCee-EEEEeccCcc--------hhHHHHHHHHHHhC-CEEEEecC----CCEEEEeCCccCCHHHHHHHHHHH
Confidence 222334444 3334432100 01456788888755 99998753 578999986 4999999999999
Q ss_pred HHHH
Q 012124 458 KKGL 461 (470)
Q Consensus 458 ~~~l 461 (470)
++++
T Consensus 397 ~~~l 400 (401)
T TIGR01885 397 KKVI 400 (401)
T ss_pred HHHh
Confidence 9876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=193.27 Aligned_cols=217 Identities=14% Similarity=0.191 Sum_probs=163.7
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCCh----HHHHHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY----PEMARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v 205 (470)
.+...+|++.++++. | .++.+++++++.++..++.+++++||+|+++...|.+. ...++..|++++.+
T Consensus 69 ~p~~~~le~~lA~l~----g----~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~v 140 (403)
T PRK07810 69 NPTVSMFEERLRLIE----G----AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFV 140 (403)
T ss_pred CchHHHHHHHHHHHh----C----CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEE
Confidence 334667888888775 3 34788888888999999999999999999988666443 34567789999998
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+. .|++.+++++++++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|+...+.. ++ .
T Consensus 141 d~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~~----~~-~ 204 (403)
T PRK07810 141 DG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAA-GAKVVLDNVFATPLLQR----GL-P 204 (403)
T ss_pred CC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCCccccCC----hh-h
Confidence 74 3889999999999999999999999999998 88999999999 99999999998643321 11 1
Q ss_pred cCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
.+..+++.|++|.++..|.++ ||++++++.+. .++........+.+++.+.++...|+. +..+.++.
T Consensus 205 ----~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~R~~~~ 273 (403)
T PRK07810 205 ----LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-------LALRVRHS 273 (403)
T ss_pred ----cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-------HHHHHHHH
Confidence 244689999999997678887 88888887665 455555555667788877776665553 33444444
Q ss_pred HHHHHHHHHHhccCCCCe
Q 012124 364 RERRDFLVKSFGELEGVK 381 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~ 381 (470)
.++...+.+.|++.|++.
T Consensus 274 ~~~a~~~a~~L~~~p~v~ 291 (403)
T PRK07810 274 NASALRIAEFLEGHPAVR 291 (403)
T ss_pred HHHHHHHHHHHhcCCCcc
Confidence 556666667777766653
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-21 Score=187.51 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=159.4
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH---HHcCCEEEEec
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATPVILP 206 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~ 206 (470)
.+...+|++.+++++. .+++++++|+++|+..++.+++++||+|+++.|+|.++...+ ...|+++..+.
T Consensus 52 np~~~~lE~~lA~l~g--------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~ 123 (385)
T PRK08574 52 NPTLRPLEEALAKLEG--------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY 123 (385)
T ss_pred CccHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence 3466789999998862 357888999999999999999999999999999999987766 44577766543
Q ss_pred CcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 207 TRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++ |++||+|++|+..... .++
T Consensus 124 --------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~----~~l-- 185 (385)
T PRK08574 124 --------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKEL-GAILVVDNTFATPLLY----RPL-- 185 (385)
T ss_pred --------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCccccC----Chh--
Confidence 478999999987 8999999999999999999 77899999999 9999999999642111 111
Q ss_pred cCCCCCceEEEeccCcccccccce-eeEEE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWR-LGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r-~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
. .+..+++.|++|.++.+|-. .|+++ .++++.+.+...+...+.+.+++....+...++. +....++.
T Consensus 186 -~--~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-------L~~R~~~~ 255 (385)
T PRK08574 186 -R--HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-------LEVRFERQ 255 (385)
T ss_pred -h--hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHH
Confidence 1 24569999999999645654 47555 5788888887777666666666644433333332 33344444
Q ss_pred HHHHHHHHHHhccCCCC
Q 012124 364 RERRDFLVKSFGELEGV 380 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~ 380 (470)
.++...+.+.|++.|.+
T Consensus 256 ~~na~~la~~L~~~p~v 272 (385)
T PRK08574 256 CRNAMAIAEFLSEHPKV 272 (385)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 55666677777766554
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=190.77 Aligned_cols=314 Identities=18% Similarity=0.224 Sum_probs=224.9
Q ss_pred CChHHHHHHHHHHHHcCC-----CCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHHHHHh---cCC
Q 012124 107 DTPVLIAEAGINAIREGF-----TRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAV---CSP 177 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~-----~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~~~~l---~~~ 177 (470)
+.|+.+.+++.+.+.+.. ..+.......+..+.+.+.+.+..|. ++ ++|++++|++++++.++..+ +++
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~--~~~~~v~~~~~~t~a~~~~~~~l~~~~~~ 87 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGA--PPDEEVVFTSNGTEALNAVASSLLNPLKP 87 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTS--STTEEEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCC--ccccccccccccchhhhhhhhcccccccc
Confidence 357889999988876421 11211222344444444444444563 55 79999999999999999999 789
Q ss_pred CCeEEEcCCCCCChHH----HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 178 GDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 178 gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
||+|++.+-.|++... +.+..|+++..++.+.++ .+|++.+++.+++++++++++..+|-||...| +++|.
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i~~I~ 162 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNPDTRLVSISHVENSTGVRNP---IEEIA 162 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHTTESEEEEESBETTTTBBSS---HHHHH
T ss_pred ccccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhccccceEEeecccccccEEee---eceeh
Confidence 9999999999887663 344679999999886443 48999999999999999999999999999999 88999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-----
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS----- 328 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~----- 328 (470)
++|+++ ++++++|.+++.. .....+.. .+-.++++|..|.+|.+ .+|+++.+++.++.+.....
T Consensus 163 ~~~~~~-~~~~~vD~~~~~g----~~~id~~~----~~~D~~~~s~~Kl~gp~--G~g~l~v~~~~~~~~~p~~~~~~~~ 231 (371)
T PF00266_consen 163 KLAHEY-GALLVVDAAQSAG----CVPIDLDE----LGADFLVFSSHKLGGPP--GLGFLYVRPEAIERLRPAKPGGGYL 231 (371)
T ss_dssp HHHHHT-TSEEEEE-TTTTT----TSS--TTT----TTESEEEEESTSTTSSS--TEEEEEEEHHHHHHHHTSSSSSSTT
T ss_pred hhhhcc-CCceeEechhccc----cccccccc----cccceeeecccccCCCC--chhhheehhhhhhcccccccccccc
Confidence 999999 9999999998752 22222222 34558999999944434 48999999988888732111
Q ss_pred ----------------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----Cce
Q 012124 329 ----------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGA 388 (470)
Q Consensus 329 ----------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g 388 (470)
.....++.....++..+++.- .+..+++++++..+..+++.+.|.+++++.+..| ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 309 (371)
T PF00266_consen 232 DFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL--EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRP 309 (371)
T ss_dssp THHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGT
T ss_pred ccccchhcccccccccccccceeeehhhhHHHHHhhh--hccccccchhhhhhHHHHHHhhhhcCCceeEeeeccccccc
Confidence 111235555555656666541 1455778888899999999999999988777543 223
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------CCCcEEEEeec--CHHHHHHH
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------DDTCIRISYAA--SLTTLQAA 453 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------~~~~iRls~~~--~~~~i~~~ 453 (470)
-.+.+.++.. +...+.+.|.++ ||.+..|..+. ..+.+|+|++. +++|++++
T Consensus 310 ~i~~~~~~~~------------~~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 310 SIVSFNLPGS------------DADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TEEEEEETTS------------SHHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ceEEEeecCC------------CHHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 3355566543 788898888777 99999987654 24899999987 88998864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=190.25 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=157.3
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~ 206 (470)
+...+|++.++++. | .+++++++|+++|+.+++.++++|||+|++++|+|..+.. .+...|++++.++
T Consensus 65 pt~~~Le~~lA~l~----g----~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 65 PTSLALAQRLAEIE----G----GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYD 136 (394)
T ss_pred HHHHHHHHHHHHHh----C----CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEEC
Confidence 34456666666653 3 4689999999999999999999999999999999998774 4567899998886
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.. +.+.+++++++++++|++++|+||+|.. .++++|+++|+++ |++||+|++|....+ ...+
T Consensus 137 ~~-------~~~~l~~~i~~~tklV~le~p~Np~~~~---~di~~I~~ia~~~-gi~livD~a~a~~~~-------~~~l 198 (394)
T PRK07050 137 PL-------IGAGIADLIQPNTRLIWLEAPGSVTMEV---PDVPAITAAARAR-GVVTAIDNTYSAGLA-------FKPF 198 (394)
T ss_pred CC-------CHHHHHHhcCCCCeEEEEECCCCCCccH---hhHHHHHHHHHHc-CCEEEEECCcccccc-------cCHH
Confidence 42 4477888999999999999999999754 4599999999999 999999999975221 1112
Q ss_pred CCCCCceEEEeccCcccc-cccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
. .+..+++.|++|.++ -.+.+.|++++ +++++++++..+...+.+.+++....+...++ . +....++..
T Consensus 199 ~--~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~------t-l~~Rl~~~~ 269 (394)
T PRK07050 199 E--HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLP------S-LQVRLAAHD 269 (394)
T ss_pred H--cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC------c-HHHHHHHHH
Confidence 1 245699999999995 23456888775 77888888877776666777766543333222 2 222334444
Q ss_pred HHHHHHHHHhccCCCC
Q 012124 365 ERRDFLVKSFGELEGV 380 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~ 380 (470)
++...+.+.|++.|++
T Consensus 270 ~~a~~la~~L~~~p~v 285 (394)
T PRK07050 270 RSALEVAEWLKARPEI 285 (394)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 5555666777665544
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-21 Score=189.37 Aligned_cols=344 Identities=12% Similarity=0.067 Sum_probs=219.7
Q ss_pred cCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCC-CCCcEEE-ecChHHH
Q 012124 92 AGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY-TPDQILV-SNGAKQS 166 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~-~~~~i~i-t~g~~~a 166 (470)
+|+.+||+..|.... .. ++.+.+++.+++.+....+ ......+.+..+++.+.+....+. ..+.+++ +++++++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA 111 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIH-SLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNA 111 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhcccee-ccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHH
Confidence 677889998886433 33 7999999999987522111 111224566667776654321111 1135655 5899999
Q ss_pred HHHHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCC------------EEEEecCcCCCC-CccCHHhHhhhcc-----
Q 012124 167 ILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN-FLLDPKVLESKLT----- 225 (470)
Q Consensus 167 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~-~~~d~~~l~~~l~----- 225 (470)
.+.+++... ....+|+....+|++....+.. .|. .++.+|...... ..-+++.+++.+.
T Consensus 112 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (412)
T TIGR02407 112 VESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSG 191 (412)
T ss_pred HHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCC
Confidence 999988753 2236788889999987654332 221 223333311000 0014667777774
Q ss_pred -CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcc
Q 012124 226 -EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
+++.+|++...++++|. ..|++.+++|.++|++| |+++|+||++..|...+... .....+.+ | +.+|||.
T Consensus 192 ~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GRtG~~~a~~~~~v~P--D----i~~~~K~ 264 (412)
T TIGR02407 192 VDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRH-DILLIVDDIQAGCGRTGTFFSFEPAGIEP--D----IVCLSKS 264 (412)
T ss_pred CCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchhHHhcccCCCC--C----EEEechh
Confidence 24567777666888998 67999999999999999 99999999998753322211 11123333 2 4468999
Q ss_pred cccc-cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 303 FAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 303 ~~~~-G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
++ + |+|+|++++++++ +.+.......+++.+++...++.+.++ .+.+ .++++++.+.++++.+.+.+. +
T Consensus 265 lg-~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~---~ 338 (412)
T TIGR02407 265 IS-GYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF-EKAVQRKSEIIQERLDRIVAE---Y 338 (412)
T ss_pred cc-CCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHhh---C
Confidence 98 7 9999999998876 554433444566778886655555444 3222 344555555555555444443 3
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~ 455 (470)
+++.......|+++|+++++.. ....+.+.++++ ||.+.+...+ .+.+|++... ++++++++++
T Consensus 339 ~~~~~~vrg~Gl~~~l~l~~~~-----------~~~~~~~~~~~~-Gv~v~~~~~~--~~~lr~~p~l~~t~~~i~~~~~ 404 (412)
T TIGR02407 339 PELIKQVRGRGLMQGIECGDGD-----------LAGKIAKAAFEN-GLIIETSGPN--DEVIKLLPPLTIDEETLQQGLD 404 (412)
T ss_pred CCceEeeecceeEEEEEecChH-----------HHHHHHHHHHHC-CCEEeccCCC--CCEEEEECCCCCCHHHHHHHHH
Confidence 3333344566898999997531 356777777765 9999874322 4679988775 9999999999
Q ss_pred HHHHHHHh
Q 012124 456 RIKKGLLT 463 (470)
Q Consensus 456 ~l~~~l~~ 463 (470)
+|++++++
T Consensus 405 ~l~~~l~~ 412 (412)
T TIGR02407 405 ILEQAVEE 412 (412)
T ss_pred HHHHHHhC
Confidence 99998864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=188.72 Aligned_cols=284 Identities=12% Similarity=0.145 Sum_probs=191.8
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecC
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPT 207 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~ 207 (470)
+.+...+|+++++++. ..+++++++|+++|+.+++. ++++||+|+++.+.|......+...-.+ .+.+.
T Consensus 52 ~~p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~- 121 (364)
T PRK07269 52 KNPTRAKLEETLAAIE--------SADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFT- 121 (364)
T ss_pred CCccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEE-
Confidence 4456789999999985 45799999999999999884 6699999999999998766544332111 11111
Q ss_pred cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC
Q 012124 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 287 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~ 287 (470)
+.+|++.+++++++++|+|++++|+||||.+.+ +++|+++|+++ |+++|+|++|..-.+. .++.
T Consensus 122 -----~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~-gi~vvvD~t~~~~~~~----~pl~--- 185 (364)
T PRK07269 122 -----YANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAK-GAKVIVDNTFYSPIYQ----RPIE--- 185 (364)
T ss_pred -----ecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cchh---
Confidence 225899999999999999999999999999987 88999999999 9999999997542211 1221
Q ss_pred CCCCceEEEeccCccccccc-ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 288 GMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G-~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+-.+++.|++|.++-+| .=.|++++ ++++.+++...+.....+.+++....+...|+ .+..+.++.++
T Consensus 186 --~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~-------tL~~r~~~~~~ 256 (364)
T PRK07269 186 --LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK-------TLSLRMERSTA 256 (364)
T ss_pred --hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHHHHHHHHHH
Confidence 234499999999996223 12588887 56788878766655555667776555444443 25556666677
Q ss_pred HHHHHHHHhccCCCC-eec-CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHH---------HHcCCEEEECCCCCC
Q 012124 366 RRDFLVKSFGELEGV-KMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL---------LDKAQVALVPGDAFG 434 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L---------~~~~gI~v~pg~~f~ 434 (470)
+...+.+.|++.|++ .+. ++.+|++.+ .+... .....|...| .....+.+.|+..+.
T Consensus 257 na~~~a~~L~~~p~v~~v~ypg~gg~~sf-~~~~~-----------~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~ 324 (364)
T PRK07269 257 NAQEVVAFLKKSPAVKEVLYTGKGGMISF-KVADE-----------TRIPHILNSLKVFTFAESLGGVESLITYPTTQTH 324 (364)
T ss_pred HHHHHHHHHHhCCCccEEeCCCcCcEEEE-EECCH-----------HHHHHHHHhCCcceEccCCCCcCeEeeCCccccc
Confidence 888888888888775 343 667777444 44221 0223333332 222244555644321
Q ss_pred -------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 435 -------------DDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 435 -------------~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
.++-+|||++.. +.+..++.|++++
T Consensus 325 ~~~~~~~r~~~Gi~~~liRlsvGlE--~~~dli~dl~~al 362 (364)
T PRK07269 325 ADIPAEVRHSYGLTDDLLRLSIGIE--DARDLIADLKQAL 362 (364)
T ss_pred ccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHh
Confidence 135799999983 3445555555554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=180.54 Aligned_cols=332 Identities=16% Similarity=0.221 Sum_probs=234.4
Q ss_pred hcCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 91 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 91 ~~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
.+|+.+|||..|.- .+.. +|.+++++.++..+- ...| ..+.+..+++.|.+..+ ..|.++++|+++
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~-----~~~~~~~la~~L~~~s~---~~d~vff~NSGa 110 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLF-----YNEPQAELAEKLVELSP---FADRVFFCNSGA 110 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccccc-----CChHHHHHHHHHHhhCc---cccEEEEcCCcH
Confidence 36889999998873 4444 899999999987652 2223 23567777777765433 368999999999
Q ss_pred HHHHHHHHHhc---C-C-CCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhccC
Q 012124 165 QSILQAVLAVC---S-P-GDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 165 ~al~~~~~~l~---~-~-gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
||++.+++... . + ..+|+...-+|++-....-+.+.+ +..+|. -|++++++++++
T Consensus 111 EA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf-------nDi~al~~ai~~ 183 (404)
T COG4992 111 EANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF-------NDIEALEAAIDE 183 (404)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-------CCHHHHHHHhcc
Confidence 99999998753 2 2 236777777777644332222222 223332 189999999999
Q ss_pred CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
++.+|++...|--.|+ +.+++.++++.++|++| |+++|.||++..+...|. ++.+.. .+..=-|-++.|.+|
T Consensus 184 ~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~-g~LLI~DEVQtG~GRTGk----~fA~e~-~gV~PDI~tlaK~Lg- 256 (404)
T COG4992 184 DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEH-GALLILDEVQTGLGRTGK----LFAYEH-YGVEPDILTLAKALG- 256 (404)
T ss_pred CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHh-CeEEEEeccccCCCccch----HHHHHH-hCCCCCEEEeecccc-
Confidence 9999999888988887 45778899999999999 999999999998755443 221110 011111556889998
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCCe
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVK 381 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~ 381 (470)
.|+++|.+++.+.+.+.+..-....+++.|+++..++.+.|+--.. ++.+++. +++-++|.+.|++ ++ +-
T Consensus 257 GG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~-e~ll~~v----~~~g~~~~~~L~~l~~~~~-~v 330 (404)
T COG4992 257 GGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE-EGLLENV----REKGEYLLQRLRELKRRYP-LV 330 (404)
T ss_pred CCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc-hhHHHHH----HHHHHHHHHHHHHHhhcCC-ce
Confidence 9999999999966677676666678899999999999888874221 3344444 4444455555544 32 21
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
.....-|+.+-+.+...+ ...++++.|.++ ||++.+.. ++.+|+.... +++++++++++|++
T Consensus 331 ~~vRG~GLmiGiel~~~~-----------~a~~~~~~~~~~-gvL~~~a~----~~ViR~~PpL~i~~eei~~~~~~l~~ 394 (404)
T COG4992 331 KEVRGRGLMIGIELKEPY-----------RARDIVRALREE-GVLVLPAG----PNVIRFLPPLVITEEEIDEALDALER 394 (404)
T ss_pred eeeecceeEEEEEecCcc-----------cHHHHHHHHHHC-CeEEecCC----CCeEEecCCccCCHHHHHHHHHHHHH
Confidence 112344787888886531 367888888766 89887743 5689998776 99999999999999
Q ss_pred HHHhhCC
Q 012124 460 GLLTLRP 466 (470)
Q Consensus 460 ~l~~~~~ 466 (470)
+++.+..
T Consensus 395 ~l~~~~~ 401 (404)
T COG4992 395 ALAAASA 401 (404)
T ss_pred HHHHhhh
Confidence 9987654
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-21 Score=187.25 Aligned_cols=281 Identities=14% Similarity=0.144 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 208 (470)
..+|++.++++. |. +..+++++++.++..++.++++|||+|+++.+.|.+.. ..+...|++++.++.
T Consensus 65 ~~~le~~lA~l~----g~----~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 135 (389)
T PRK05968 65 VRAFEEMLAKLE----GA----EDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG- 135 (389)
T ss_pred HHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC-
Confidence 467788888775 32 23455566668999899889999999999999998754 455668999988874
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|++.+++++ +++++|++++|+||+ ++..++++|+++|+++ |++||+|++|....+.. ++.
T Consensus 136 ------~d~~~l~~~i-~~tklV~ie~pt~~~---~~~~dl~~i~~la~~~-gi~vivD~a~a~~~~~~----p~~---- 196 (389)
T PRK05968 136 ------RDEEAVAKAL-PGAKLLYLESPTSWV---FELQDVAALAALAKRH-GVVTMIDNSWASPVFQR----PIT---- 196 (389)
T ss_pred ------CCHHHHHHhc-ccCCEEEEECCCCCC---CcHHHHHHHHHHHHHc-CCEEEEECCCcchhccC----chh----
Confidence 2889999988 578999998666655 5556699999999999 99999999997644321 111
Q ss_pred CCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhh-hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+..+++.|++|.++.+| .+.|++++++++++++..... ......+++.+..+...|+. +....++..++
T Consensus 197 -~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-------l~~r~~~~~~~ 268 (389)
T PRK05968 197 -LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-------LPLRMKAHEAS 268 (389)
T ss_pred -cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-------HHHHHHHHHHH
Confidence 133488889999997544 578999999999888876543 23445666665555444432 34444444556
Q ss_pred HHHHHHHhccCCCCeecC-C------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 367 RDFLVKSFGELEGVKMSE-P------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 367 ~~~l~~~L~~~~g~~~~~-~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
.+.+.+.|++.|++.... | .+|+ +.+++.+.. +..+|++.|.. .++.+.-|..+
T Consensus 269 a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~-~sf~~~~~~-----------~~~~f~~~L~~-~~~~~s~G~~~ 335 (389)
T PRK05968 269 ALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGL-FSFIFREGI-----------DVRAFADALKL-FRLGVSWGGHE 335 (389)
T ss_pred HHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceE-EEEEECCHH-----------HHHHHHHhCCc-cEEecCCCCCC
Confidence 777888888888774332 3 1234 445664321 56778887743 35555444433
Q ss_pred C----------------------C-CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 434 G----------------------D-DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 434 ~----------------------~-~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
. . ++.+|+|++.. +.++.++.|++++++.
T Consensus 336 slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE--~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 336 SLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLE--GTEALWADLEQALAAA 387 (389)
T ss_pred ceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHHh
Confidence 2 1 35899999982 2334444555555443
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-20 Score=182.35 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=191.6
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012124 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 200 (470)
Q Consensus 125 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 200 (470)
..|+.. |.+ -++.+.+.+.+..|. ++++++++++.++..++. ++++||+|+++++.|.++... +...|+
T Consensus 39 ~~Y~r~-~~p-~~~~le~~la~l~g~----~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 39 YDYTRS-GNP-TRTALESLLAKLDKA----DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGV 111 (378)
T ss_pred CccCCC-CCh-HHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCc
Confidence 456543 332 245555555554553 567777777789998776 779999999999999887653 456899
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
+++.++. .|++.+++++++++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|.... ..
T Consensus 112 ~v~~vd~-------~d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~-g~~vivD~a~~~~~----~~ 176 (378)
T TIGR01329 112 VVVHVDT-------TDLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQ-NALVVVDNTMMSPL----LC 176 (378)
T ss_pred EEEEeCC-------CCHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccc----cC
Confidence 9999986 2889999999999999999999999999998 89999999999 99999999985321 11
Q ss_pred ccccccCCCCCceEEEeccCccccc-ccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
.++ .+ +-.+++.|++|.++- .+...|++++ ++++.+++...+.....+.+++....+..-++ .+..
T Consensus 177 ~~l-~~----g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~-------tl~~ 244 (378)
T TIGR01329 177 NPL-EL----GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK-------TLAI 244 (378)
T ss_pred Chh-hc----CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCC-------CHHH
Confidence 222 11 335999999998852 2467899987 55666777766665555566664433222222 2333
Q ss_pred HHHHHHHHHHHHHHHhccCCCCe-ec-------------C----CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHH
Q 012124 359 MVKAFRERRDFLVKSFGELEGVK-MS-------------E----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~-~~-------------~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 420 (470)
+.++-.++...+.+.|++.|.+. +. . ..+|+ +.+.+.+. ....+|+..|
T Consensus 245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~-~sf~~~~~-----------~~~~~~~~~L- 311 (378)
T TIGR01329 245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSV-LSFETGSV-----------ALSKRLVEAT- 311 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceE-EEEEECCH-----------HHHHHHHHhC-
Confidence 34444555555555665544331 11 0 12344 45566321 1266788877
Q ss_pred HcCCEEEECCCCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 421 DKAQVALVPGDAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 421 ~~~gI~v~pg~~f~-----------------------~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+..++.+.-|.... .++.+|||++.. +.+..++.|++++++
T Consensus 312 ~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE--~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 312 KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIE--DVDDLISDLDIAFVT 375 (378)
T ss_pred cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccC--CHHHHHHHHHHHHHh
Confidence 45577776665432 025799999983 345556666666654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-20 Score=180.53 Aligned_cols=310 Identities=18% Similarity=0.164 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
.+...+++.+.+..+.. .......+|++++++++. .++.++++|+++|+.+++.++ +++||+|+++.|+
T Consensus 9 ~~~~~~~v~~~~~~~~~--~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~ 78 (380)
T TIGR03588 9 DQDDIDAVVEVLKSDFL--TQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPIT 78 (380)
T ss_pred CHHHHHHHHHHHhcCCc--cCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence 34557778888766543 334567899999999973 135667778999999999998 7899999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEE
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~ 263 (470)
|+.+...++..|++++.++++++ ++.+|++.+++.++ +++++|++ .|++|...+ +++|.++|++| |++
T Consensus 79 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l~~~~-~~~ 150 (380)
T TIGR03588 79 FVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAALAKKH-GLK 150 (380)
T ss_pred hHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHHHHHc-CCE
Confidence 99999999999999999999753 46699999999998 68888874 457898877 88899999999 999
Q ss_pred EEEeccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEc-CHHHHHHHHHHhhhcc--------
Q 012124 264 VLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-PKHFVAACNKIQSQFT-------- 331 (470)
Q Consensus 264 iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~-------- 331 (470)
||+|++++... +++. .+... ....+.+.||+ |.++ .| ..|+++. ++++.++++..+....
T Consensus 151 lI~D~a~a~g~~~~~~---~~g~~---~~~d~~~~S~~~~K~~~-~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 222 (380)
T TIGR03588 151 IIEDASHALGAEYGGK---PVGNC---RYADATVFSFHPVKIIT-TA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFE 222 (380)
T ss_pred EEEECCCcccCccCCE---eCCCc---cccceEEEecCCCCccc-cc-CceEEEECCHHHHHHHHHHHHCCCCCCccccc
Confidence 99999998632 3321 11110 01246677775 8885 33 4576665 5677777665432111
Q ss_pred -----------------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEE
Q 012124 332 -----------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFY 390 (470)
Q Consensus 332 -----------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~ 390 (470)
...+.+....+...|+ .++++.++-+++.+++.+.|.+++++....+. ..++
T Consensus 223 ~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~-------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 295 (380)
T TIGR03588 223 KQDEGPWYYEQQELGFNYRMTDIQAALGLSQLK-------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWH 295 (380)
T ss_pred ccccCcceeeeeccccccCccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEE
Confidence 1112222122222222 24555566677777888888888766543321 1222
Q ss_pred E-eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------C---CC-------CcEEEEeec--C
Q 012124 391 L-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------G---DD-------TCIRISYAA--S 446 (470)
Q Consensus 391 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-----------~---~~-------~~iRls~~~--~ 446 (470)
+ .+.++... ..+.+++.+.|.++ ||.+...... . .+ ..++|.+.. +
T Consensus 296 ~~~i~~~~~~---------~~~r~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~ 365 (380)
T TIGR03588 296 LYPILLDQEF---------GCTRKEVFEALRAA-GIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALT 365 (380)
T ss_pred EEEEEECCcC---------CCCHHHHHHHHHHC-CCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCC
Confidence 2 23343210 01578888888655 8987643211 0 01 457887775 8
Q ss_pred HHHHHHHHHHHHHHH
Q 012124 447 LTTLQAAVERIKKGL 461 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l 461 (470)
+++++..++.|++++
T Consensus 366 ~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 366 LEQQQRVVETLRKVL 380 (380)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999988763
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=184.75 Aligned_cols=347 Identities=11% Similarity=0.083 Sum_probs=212.5
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-CCcEEE-ecChHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-PDQILV-SNGAKQS 166 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-~~~i~i-t~g~~~a 166 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+....+ ......+.+..+++.+.+....+.. .+.+++ ++++++|
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA 115 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITH-GLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNA 115 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccccc-ccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHH
Confidence 67789999888643 333 7899999999887521111 1111235566666666543211111 225656 5899999
Q ss_pred HHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-C------------CEEEEecCcCCCC-CccCHHhHhhhccC----
Q 012124 167 ILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISEN-FLLDPKVLESKLTE---- 226 (470)
Q Consensus 167 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~-~~~d~~~l~~~l~~---- 226 (470)
.+.+++... ....+|+....+|++........ | ..+..+|...... ..-|++.+++.+.+
T Consensus 116 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~ 195 (425)
T PRK09264 116 VEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSG 195 (425)
T ss_pred HHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCC
Confidence 999888653 22367888888999876433221 1 0233444321000 00266778887742
Q ss_pred --CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcc
Q 012124 227 --KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 227 --~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++.+|++...+...|. +.+.+.+++|.++|++| |+++|+||++.+|...+... .....+.+ + +.+|||.
T Consensus 196 ~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~~~~~~~~v~P--D----i~t~~K~ 268 (425)
T PRK09264 196 VDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKH-DILLIVDDIQAGCGRTGTFFSFERAGITP--D----IVTLSKS 268 (425)
T ss_pred CCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEechhhCCccccHHHHHhhcCCCC--C----EEEeccc
Confidence 3556666555666776 67899999999999999 99999999998754333211 01112332 2 4578999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc----cCC
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG----ELE 378 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~ 378 (470)
++..|+++|++++++++ ..+.......+++.+++...++.+.++.-.. + ....+..+++.+.+.+.|+ +.+
T Consensus 269 l~~~G~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~-~---~~l~~~~~~~g~~l~~~l~~l~~~~~ 343 (425)
T PRK09264 269 ISGYGLPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS-D---DAFEKEVKAKGELVRERLEEIAAKYP 343 (425)
T ss_pred cCCCccceEEEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh-h---hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98339999999999886 3443322334566777777766666631000 1 1222333333333333332 233
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVER 456 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~ 456 (470)
.+.......|+++|+.+++.. ....+++.+.++ ||.+.+...+ ...||++.. .+++++++++++
T Consensus 344 ~~~~~vrg~Gl~~~i~l~~~~-----------~~~~l~~~~~~~-Gv~~~~~~~~--~~~lr~~p~l~~t~~ei~~~~~~ 409 (425)
T PRK09264 344 GLGAEVRGRGMMQGIDFGDGE-----------LAGKIAAEAFEN-GLIIETSGPE--DEVVKLLPPLTIDEEELEEGLDI 409 (425)
T ss_pred CceecceecccEEEEEecChH-----------HHHHHHHHHHHC-CCEEeccCCC--CCEEEEeCCCCCCHHHHHHHHHH
Confidence 232223345788899986431 356778777766 9999875433 367888866 489999999999
Q ss_pred HHHHHHhhC
Q 012124 457 IKKGLLTLR 465 (470)
Q Consensus 457 l~~~l~~~~ 465 (470)
|+++++++.
T Consensus 410 l~~~l~~~~ 418 (425)
T PRK09264 410 LEEAVAEVL 418 (425)
T ss_pred HHHHHHHHH
Confidence 999987754
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=185.08 Aligned_cols=351 Identities=14% Similarity=0.110 Sum_probs=218.1
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+..... ...-..+....+++.|.+..+ -..+.+++++++++|.+
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~~--~~~~~v~f~~SGseA~e 117 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGP-SGVIYYESILKLAEELAEITP--GGLDCFFFSNSGAEAIE 117 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHH
Confidence 5778999998853 3333 7889999999987522111 001123555666666665442 13468999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCC-------------EEEEecCcCCC--CCc--------cCHHhHhh
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISE--NFL--------LDPKVLES 222 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~--~~~--------~d~~~l~~ 222 (470)
.+++... .....|+..+-+|++....... .+. .+..+|..... ..+ -+++.+++
T Consensus 118 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (433)
T PRK08117 118 GALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197 (433)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence 9988632 1236788888888886643321 110 11222221100 000 14556666
Q ss_pred hcc-----CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEE
Q 012124 223 KLT-----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 296 (470)
Q Consensus 223 ~l~-----~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i 296 (470)
.++ +++.+|++...+...|.. .+.+.+++|.++|++| |+++|.||+|.+|...+.... ...+ +...-+
T Consensus 198 ~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~gr~G~~~~-~~~~----gv~pDi 271 (433)
T PRK08117 198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH-GILLIFDEVQTGFGRTGEWFA-AQTF----GVVPDI 271 (433)
T ss_pred HHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhccCccccchh-Hhhc----CCCCCE
Confidence 553 245566665556666764 5899999999999999 999999999998655443211 1111 112235
Q ss_pred eccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
.||||.++ +|+++|++++++++++.+.......+++.+++.+.++.+.|+.-.. + .+.+.++++.+++.+.|++
T Consensus 272 ~t~sK~lg-~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~-~----~l~~~~~~~g~~l~~~L~~ 345 (433)
T PRK08117 272 MTIAKGIA-SGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKE-E----KLLDNANEMGAYALERLEV 345 (433)
T ss_pred eehhhhcc-CCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHHHHH
Confidence 79999998 9999999999999988876545555677899999999998874211 1 2233333334444444433
Q ss_pred CC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHH
Q 012124 377 LE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQ 451 (470)
Q Consensus 377 ~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~ 451 (470)
+. ++....+..|+++++.+.+..+ .. .......+.+.+.++ ||.+.+... ..+.+|++++ .++++|+
T Consensus 346 l~~~~~~~~~vrg~Gl~~gi~~~~~~~-~~----~~~~~~~~~~~l~~~-Gv~~~~~g~--~~~~lRl~p~~~~t~~~i~ 417 (433)
T PRK08117 346 LKEKHPVIGDVRGIGLMIGIEIVDPDG-EP----DGDAVEKILDKCLEK-GLLFYLCGN--AGNVLRMIPPLTVTKEEID 417 (433)
T ss_pred HHhcCCceeeeecCCcEEEEEEecCCC-Cc----chHHHHHHHHHHHHC-CCEEeecCC--CCCEEEEeCCccCCHHHHH
Confidence 20 2222234456767777743200 00 001235566666654 998876321 2468999964 4999999
Q ss_pred HHHHHHHHHHHhhC
Q 012124 452 AAVERIKKGLLTLR 465 (470)
Q Consensus 452 ~~l~~l~~~l~~~~ 465 (470)
+++++|.++++++.
T Consensus 418 ~~~~~l~~~l~~~~ 431 (433)
T PRK08117 418 EGLDILDEALTEYE 431 (433)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-20 Score=180.75 Aligned_cols=211 Identities=14% Similarity=0.139 Sum_probs=152.6
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 208 (470)
..+|++.++++. |. . +.+++++| +.++.+++. ++++||+|++.+|.|++.. ..++..|++++.++.+
T Consensus 56 ~~~le~~lA~l~----g~--~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 126 (390)
T PRK08064 56 REALEDIIAELE----GG--T-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT 126 (390)
T ss_pred HHHHHHHHHHHh----CC--C-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence 456777777765 42 2 45555555 568887776 7789999999999998644 3455689999999862
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
|++.+++++++++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|...... .++ .
T Consensus 127 -------d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~----~~~-~--- 187 (390)
T PRK08064 127 -------NLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAI-GCLTFVDNTFLTPLLQ----KPL-D--- 187 (390)
T ss_pred -------CHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHc-CCEEEEECCCCccccc----Cch-h---
Confidence 789999999999999999999999999998 78889999999 9999999998763221 111 1
Q ss_pred CCCceEEEeccCcccc-cccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~-~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+..+++.|++|.++ -+|...|++++ ++++++.+...+..++...++..... .+.. -+.+....++..++
T Consensus 188 -~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~g----l~tl~~R~~~~~~~ 259 (390)
T PRK08064 188 -LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL---VLRG----LKTLHVRLEHSSET 259 (390)
T ss_pred -hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHcc----cCcHHHHHHHHHHH
Confidence 245689999999985 23445677665 56888988888776665555554443 2222 22344555555677
Q ss_pred HHHHHHHhccCCC
Q 012124 367 RDFLVKSFGELEG 379 (470)
Q Consensus 367 ~~~l~~~L~~~~g 379 (470)
...+.+.|++.|.
T Consensus 260 a~~la~~L~~~~~ 272 (390)
T PRK08064 260 ANKIALYLQEHPK 272 (390)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777776544
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-20 Score=183.40 Aligned_cols=351 Identities=14% Similarity=0.122 Sum_probs=219.4
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+. ..+.......+.+..+++.+....+.. ..+.+++++++++|.+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e 131 (443)
T PRK06058 54 DGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARF-THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSALFNSGAEAVE 131 (443)
T ss_pred CCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCcHHHHH
Confidence 6788999998863 3333 789999999998763 223222334577778888887654321 1257889999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcCCCC----Ccc--------CHHhH
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISEN----FLL--------DPKVL 220 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~----~~~--------d~~~l 220 (470)
.+++... ...++|+..+.+|++........ +. .+..+|.....+ ... .++.+
T Consensus 132 ~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 211 (443)
T PRK06058 132 NAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVI 211 (443)
T ss_pred HHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHH
Confidence 9988432 23378999999999987544321 11 122222211000 000 12334
Q ss_pred hhhcc-CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 221 ESKLT-EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 221 ~~~l~-~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
++.+. +++.+|++...+.-.|.. .+++.+++|.++|++| |+++|.||++..|...+... ....+.- ... +-+
T Consensus 212 ~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfgRtG~~f-a~~~~gv-~PD---iv~ 285 (443)
T PRK06058 212 EKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCREN-GVVFIADEVQTGFARTGAWF-ACEHEGI-VPD---LIT 285 (443)
T ss_pred HHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcChhhh-HHHhcCC-CCC---EEE
Confidence 44443 456666553334344554 5688999999999999 99999999999875443211 1111111 111 335
Q ss_pred cCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 299 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 299 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
++|.++ +|+++|++++++++++.+.......+++.+++++.++.+.|+.- ++ ..+.+..+++.+++.+.|+++.
T Consensus 286 ~gK~l~-~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~ 359 (443)
T PRK06058 286 TAKGIA-GGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETI---EE--DDLVARARQIEALMTDRLRALA 359 (443)
T ss_pred Eccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHHHH
Confidence 689998 99999999999999888765555578889999999999998741 11 1344555555566666665431
Q ss_pred ---CC-eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHH
Q 012124 379 ---GV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQA 452 (470)
Q Consensus 379 ---g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~ 452 (470)
++ .-....+.| +.+.+...... .........+.+.++++ ||.+.|+..|+ +++|+... .+++++++
T Consensus 360 ~~~~~i~~vrg~G~~-~~i~~~~~~~~----~~~~~~~~~l~~~~~~~-Gv~~~~~~~~~--~~lr~~Ppl~~t~~~i~~ 431 (443)
T PRK06058 360 AEDDRIGDVRGRGAM-IAIELVKPGTT----EPDAELTKALAAAAHAA-GVIVLTCGTYG--NVIRLLPPLVIGDELLRE 431 (443)
T ss_pred hhCCcEEeeeccceE-EEEEEecCCCC----CCcHHHHHHHHHHHHHC-CeEEeccCCCC--CEEEEECCCccCHHHHHH
Confidence 22 112334444 45555321000 00000134566666655 99999875553 68999644 59999999
Q ss_pred HHHHHHHHHHhh
Q 012124 453 AVERIKKGLLTL 464 (470)
Q Consensus 453 ~l~~l~~~l~~~ 464 (470)
++++|+++++++
T Consensus 432 ~~~~l~~~l~~~ 443 (443)
T PRK06058 432 GLDVLEAALADL 443 (443)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=183.51 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=130.2
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~ 206 (470)
+-..+|++.++++. | .+..++++++++++..++.+++++||+|++.++.|++.. ..++..|++++.++
T Consensus 57 p~~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~ 128 (418)
T TIGR01326 57 PTTDVLEQRIAALE----G----GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVD 128 (418)
T ss_pred hhHHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEEC
Confidence 33567777777775 3 246788999999999999999999999999999997654 34567899999887
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.+ |++.+++++++++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++|+...+ ..+ +
T Consensus 129 ~~-------d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~-~i~livD~t~~~~~~----~~~---l 190 (418)
T TIGR01326 129 PD-------DPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAH-GVPLIVDNTFATPYL----CRP---I 190 (418)
T ss_pred CC-------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCchhhc----CCc---h
Confidence 42 889999999989999999999999999998 88999999999 999999999974211 111 1
Q ss_pred CCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
. .+.++++.||||.++.+|+|+||++++.
T Consensus 191 ~--~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 191 D--HGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred h--cCCeEEEECccccccCCccceEEEEEec
Confidence 1 3567999999999987899999999854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-20 Score=179.11 Aligned_cols=220 Identities=13% Similarity=0.160 Sum_probs=161.1
Q ss_pred CCCCCCcCc---HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHH
Q 012124 125 TRYTPNAGT---LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARI 197 (470)
Q Consensus 125 ~~y~~~~g~---~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~ 197 (470)
..|+. .|. ..|++.++++. | .+++++++|+++|+..++.+++++||+|++++|.|++.... ++.
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~----g----~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~ 112 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELE----G----GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR 112 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHh----C----CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh
Confidence 45642 444 47888888775 2 36899999999999999999999999999999999877643 356
Q ss_pred cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC
Q 012124 198 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 277 (470)
Q Consensus 198 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~ 277 (470)
.|+++..++.. +.+.+++++++++|+|++++|+||+|...+ +++|+++|+++ |+++|+|++|+.....
T Consensus 113 ~gi~v~~~d~~-------~~e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~-g~~livD~t~a~g~~~- 180 (377)
T TIGR01324 113 MGVDITYYDPL-------IGEDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNP-GIVIMIDNTWAAGLLF- 180 (377)
T ss_pred cCcEEEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCcccccc-
Confidence 78888776531 237899999999999999999999988776 99999999999 9999999999853221
Q ss_pred CCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHH
Q 012124 278 ATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 356 (470)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 356 (470)
.++ ..+..++++|++|.++ -++...|+++++++.++.+.........+.++.....+...++ .+
T Consensus 181 ---~pl-----~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~-------tl 245 (377)
T TIGR01324 181 ---KPL-----EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLR-------TL 245 (377)
T ss_pred ---Ccc-----ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhh-------hH
Confidence 111 1355699999999995 2346789999998888877755555555566654433333332 33
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 012124 357 SKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 357 ~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
..+.++..++...+.+.|++.|.+
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~p~v 269 (377)
T TIGR01324 246 GVRLKQHQESSLAIAKWLSEQPEV 269 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 344555556666667777665443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-20 Score=181.54 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=126.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~ 208 (470)
...|.+.++++. | .+..++++|+++++..++..++++||+|+++++.|++... .++..|++++.++.
T Consensus 66 ~~~Le~~lA~le----g----~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~- 136 (431)
T PRK08248 66 TDVFEKRIAALE----G----GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP- 136 (431)
T ss_pred HHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC-
Confidence 455666666664 3 3578889999999999999999999999999999987543 45678999999986
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|++.+++++++++++|++++|+||||.+++ +++|+++|+++ +++||+|++|.. +....++
T Consensus 137 ------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~-gi~vIvD~t~a~----~~~~~pl----- 197 (431)
T PRK08248 137 ------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEH-GIPLIVDNTFAS----PYLLRPI----- 197 (431)
T ss_pred ------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEeCCCCc----cccCChh-----
Confidence 3889999999989999999999999999999 77899999999 999999999863 1111121
Q ss_pred CCCceEEEeccCcccccccceeeEEEc
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
..+..+++.|++|.+|.+|.++|++++
T Consensus 198 ~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 198 EHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred HcCCCEEEEcCccccCCCCCceEEEEE
Confidence 145669999999999889999998776
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=181.47 Aligned_cols=325 Identities=16% Similarity=0.135 Sum_probs=211.3
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC----C-CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG----F-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~-~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
++++.|..+.-. +.|+.+.+++.+.+... . ..+....+...+.+.+.+ + +..| +++++|++|+|++++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~~v~~~~~~t~~l~ 100 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKEDEVVVMNTLTINLH 100 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCCcEEEeCCchHHHH
Confidence 456888866644 34778888887665431 1 111111122233333333 2 3455 57899999999999999
Q ss_pred HHHHHhcCCCC---eEEEcCCCCCChHH----HHHHcCCEE----EEecCcCCCCCccCHHhHhhhc---cCCceEEEEc
Q 012124 169 QAVLAVCSPGD---EVIIPAPFWVSYPE----MARIADATP----VILPTRISENFLLDPKVLESKL---TEKSRLLILC 234 (470)
Q Consensus 169 ~~~~~l~~~gd---~Vlv~~p~y~~~~~----~~~~~g~~~----~~v~~~~~~~~~~d~~~l~~~l---~~~~~~i~l~ 234 (470)
.++..++++++ .|++.+..|++... .++..|+++ +.++.+ .++.+|++.+++.+ ++++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~t~lv~~~ 178 (406)
T TIGR01814 101 LLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLEDILDTIEKNGDDIAVILLS 178 (406)
T ss_pred HHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHHHHHHHHhcCCCeEEEEEe
Confidence 99998876653 68888899988443 345678887 455553 33457889988877 4689999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYI 313 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~ 313 (470)
+++|.||..++ +++|.++|+++ |+++++|++++. +..+..+.. .+-.+++.|..|.++ -|| .|.+
T Consensus 179 ~v~~~tG~~~~---~~~i~~~~~~~-g~~~~vD~aq~~----G~~~id~~~----~gvD~~~~s~hK~l~g~pG--~~l~ 244 (406)
T TIGR01814 179 GVQYYTGQLFD---MAAITRAAHAK-GALVGFDLAHAV----GNVPLDLHD----WGVDFACWCTYKYLNAGPG--AGAF 244 (406)
T ss_pred ccccccceecC---HHHHHHHHHHc-CCEEEEEccccc----CCccccccc----CCCCEEEEcCccccCCCCC--eEEE
Confidence 99999999999 88999999999 999999999986 222222222 345699999999873 244 3333
Q ss_pred EcCHHHHHHHHHH-h----------------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 012124 314 AGPKHFVAACNKI-Q----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 370 (470)
Q Consensus 314 ~~~~~~~~~l~~~-~----------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 370 (470)
+.++. ...+... . .....+++.....++.++|+.-. +...++++++.+...+++
T Consensus 245 v~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l 321 (406)
T TIGR01814 245 VHEKH-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFD--QAGMEALRKKSLLLTDYL 321 (406)
T ss_pred Eehhh-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHH
Confidence 33332 2222110 0 00012245555555555665310 223567777778888888
Q ss_pred HHHhccC----CCCeecCCC-----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 371 VKSFGEL----EGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 371 ~~~L~~~----~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
.+.|+++ +|+++..|. +++ +.+.+| . +..++.+.|.++ ||.+.. ..++.+|+
T Consensus 322 ~~~l~~~~~~~~~~~i~~~~~~~~r~~~-v~~~~~-~------------~~~~~~~~L~~~-gi~v~~----~~~~~iRi 382 (406)
T TIGR01814 322 EELIKARCGGPPVLTIITPRDHAQRGCQ-LSLTHP-V------------PGKAVFQALIKR-GVIGDK----REPSVIRV 382 (406)
T ss_pred HHHHHhhcCCCCceEEeCCCChhhcCCe-EEEEec-C------------CHHHHHHHHHHC-CEEEec----cCCCeEEE
Confidence 8888764 357666542 234 455665 2 567888888665 898753 22468999
Q ss_pred Eee--c-CHHHHHHHHHHHHHHH
Q 012124 442 SYA--A-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 442 s~~--~-~~~~i~~~l~~l~~~l 461 (470)
|++ . ++++++.+++.|++++
T Consensus 383 S~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 383 APVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred echhccCCHHHHHHHHHHHHHHh
Confidence 984 3 8999999999998765
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=175.41 Aligned_cols=219 Identities=12% Similarity=0.161 Sum_probs=157.4
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~ 206 (470)
.+..+.++.+++.+....+ .++. ++++++++|+..++.++++|||+|++++|.|+++.. .++..|.++..++
T Consensus 60 R~gnPt~~~Le~~la~le~---~~~~-v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd 135 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEG---SAGT-ILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD 135 (395)
T ss_pred CCCChHHHHHHHHHHHHhC---CCCE-EEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence 4556777777777765333 3344 555557899999999999999999999999999875 4577899988886
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.. +.+.+++++++++|+|++++|+||++...+ +++|+++|+++ |+++|+|++|....+. .+ +
T Consensus 136 ~~-------~~e~l~~al~~~TklV~lesPsNP~l~v~d---l~~I~~la~~~-g~~vvVD~t~a~p~~~----~p---l 197 (395)
T PRK05967 136 PE-------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQD---IPAIAEAAHRH-GAIVMMDNTWATPLYF----RP---L 197 (395)
T ss_pred CC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHHh-CCEEEEECCccCceec----Ch---h
Confidence 42 457899999999999999999999765554 99999999999 9999999999753211 11 1
Q ss_pred CCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
. .+..|++.|.+|.++ -.+.-.|+++..+++.+.+.........+.+++....+..-+ +-+.-+.++..+
T Consensus 198 ~--~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl-------~Tl~lR~~~~~~ 268 (395)
T PRK05967 198 D--FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGL-------RTMGIRLEHHRK 268 (395)
T ss_pred H--cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc-------ccHHHHHHHHHH
Confidence 1 355699999999873 235667988888877777765555566666776533322222 223334444456
Q ss_pred HHHHHHHHhccCCCC
Q 012124 366 RRDFLVKSFGELEGV 380 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~ 380 (470)
+...+.+.|++.|.+
T Consensus 269 na~~lA~~L~~hp~v 283 (395)
T PRK05967 269 SALEIARWLEGRPDV 283 (395)
T ss_pred HHHHHHHHHHhCCCC
Confidence 666677777776554
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=174.33 Aligned_cols=365 Identities=15% Similarity=0.153 Sum_probs=257.8
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCC----CCC-hHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD----FDT-PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~----~~~-~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~ 143 (470)
.+...++.++..+.+.... ..++..|+|+.|.-- -+. -+.+++|-.+.... -.-.|.|..|.+++.+..+++
T Consensus 30 ~V~maPpDpILGVTeAfk~--D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakL 107 (427)
T KOG1411|consen 30 HVEMAPPDPILGVTEAFKK--DPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKL 107 (427)
T ss_pred cCCCCCCCCcccHHHHHhc--CCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHH
Confidence 3445556666555443322 234467899998621 111 35666665555442 356799999999999999998
Q ss_pred HHHHcCCCCCCCcEEE--ecChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHh
Q 012124 144 LKEENGLSYTPDQILV--SNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 219 (470)
Q Consensus 144 l~~~~g~~~~~~~i~i--t~g~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 219 (470)
+-......+..++|+. |-+++.++......+ .-++..|.+++|+|.++.+++..+|+.+..+........++|.+.
T Consensus 108 a~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g 187 (427)
T KOG1411|consen 108 ALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKG 187 (427)
T ss_pred hhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccchHH
Confidence 8421111133445543 345666666554443 347899999999999999999999999988888766677799998
Q ss_pred HhhhccCC--ceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceE
Q 012124 220 LESKLTEK--SRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTL 294 (470)
Q Consensus 220 l~~~l~~~--~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i 294 (470)
+.+.+.+. ...|++ ...|||||+..+.|+|++|.++.++. +.+-+.|-+|+.|.-+.- +...+.-+..+...++
T Consensus 188 ~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~ 266 (427)
T KOG1411|consen 188 MLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEIL 266 (427)
T ss_pred HHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc-cccchhhhhhcccccCCchhhHHHHHHHHHcCCceE
Confidence 77777542 223334 44599999999999999999999999 999999999999765432 2223334444467899
Q ss_pred EEeccCcccccccceeeEEE--c-CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHH---HHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWRLGYIA--G-PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKAFR 364 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~--~-~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~---~~~~~~~~~ 364 (470)
+..||+|.+|+.|-|+|.+. + +++ +...++.+.+....++|..+..++...|.+..+...| ++-+.+++.
T Consensus 267 laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~ 346 (427)
T KOG1411|consen 267 LAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRII 346 (427)
T ss_pred eehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999853 3 333 4445667778888889999999999999876554566 455677888
Q ss_pred HHHHHHHHHhccC--C-CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 365 ERRDFLVKSFGEL--E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 365 ~~~~~l~~~L~~~--~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
..|+.|.+.|++. + .|..+..+-|||.+-.+. .+.++.|.+++.|+++-- =|+
T Consensus 347 ~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~----------------peQv~~l~ke~~iYmT~d--------GRi 402 (427)
T KOG1411|consen 347 SMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLN----------------PEQVDWLTKEYHIYLTKD--------GRI 402 (427)
T ss_pred hhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCC----------------HHHHHHHHhhheeeeccC--------ceE
Confidence 8899999999874 2 255566788998875552 244567888888887642 289
Q ss_pred Eeec-CHHHHHHHHHHHHHHH
Q 012124 442 SYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 442 s~~~-~~~~i~~~l~~l~~~l 461 (470)
|.+. +...++...+.|.++-
T Consensus 403 S~aG~ss~nV~yLa~aih~vt 423 (427)
T KOG1411|consen 403 SMAGLSSSNVPYLADAIHAVT 423 (427)
T ss_pred eeccccccCCcccchhhHhHh
Confidence 9987 6566666666665543
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=179.46 Aligned_cols=223 Identities=14% Similarity=0.164 Sum_probs=160.0
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcC
Q 012124 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIAD 199 (470)
Q Consensus 124 ~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g 199 (470)
...|+.. |.+ .++++.+++.+..| .+++++++++++++.+++ .++++||+|++++|.|+++.. .+...|
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G 196 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCC
Confidence 4567544 654 68888888887544 456777788888987665 578999999999999998764 345689
Q ss_pred CEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC
Q 012124 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279 (470)
Q Consensus 200 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~ 279 (470)
++++.++. .|++.+++++++++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|......
T Consensus 197 ~~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~-g~~lIVD~A~a~~~~~--- 262 (464)
T PLN02509 197 VVVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQ-GALVLVDNSIMSPVLS--- 262 (464)
T ss_pred eEEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHc-CCEEEEECCccccccC---
Confidence 99888864 3789999999999999999999999999755 99999999999 9999999998643221
Q ss_pred cccccccCCCCCceEEEeccCccccccc-ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHH
Q 012124 280 HTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 357 (470)
Q Consensus 280 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 357 (470)
.++ . .+..+++.|++|.++-+| .=.|++++ ++.+.+.+...+.......+++....+...| +.+.
T Consensus 263 -~pl---~--~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L-------~tL~ 329 (464)
T PLN02509 263 -RPL---E--LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI-------KTMA 329 (464)
T ss_pred -Chh---h--cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhh-------hhHH
Confidence 111 1 244599999999985333 23577775 4445555554444333334555433333322 3455
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 012124 358 KMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 358 ~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
.+.++..++.+.+.+.|++.|.+
T Consensus 330 ~R~~r~~~nA~~la~~L~~~p~V 352 (464)
T PLN02509 330 LRIEKQQENARKIAMYLSSHPRV 352 (464)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Confidence 66677777888888888887665
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=176.39 Aligned_cols=216 Identities=14% Similarity=0.197 Sum_probs=159.4
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~ 207 (470)
-..+|.+.++++. | .+..+++++++.|+.+++.+++++||+|+++.++|.+.... +...|+++..+..
T Consensus 62 tv~~lE~~la~le----g----~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 62 TLAAFEQKLAELE----G----GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 3456777777764 2 24688999999999999999999999999999999877765 6778999988864
Q ss_pred cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC
Q 012124 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 287 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~ 287 (470)
. +|++.+++++++++|+|++.+|+||++.+++ +++|+++|+++ |+++|+|++|.. +.+....
T Consensus 134 ~------~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~-gi~livD~T~~t--------P~~~~pl 195 (432)
T PRK06702 134 N------LTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKEL-EVPFIVDNTLAT--------PYLCQAF 195 (432)
T ss_pred C------CCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHc-CCEEEEECCCCc--------hhhCChh
Confidence 2 6899999999999999999999999999999 99999999999 999999999852 2222211
Q ss_pred CCCCceEEEeccCc-----cccccccee-----eEEEcCH-HHH---------------------H-HHHHHhhhccCCC
Q 012124 288 GMWERTLTVNGFSK-----AFAMTGWRL-----GYIAGPK-HFV---------------------A-ACNKIQSQFTSGA 334 (470)
Q Consensus 288 ~~~~~~i~i~S~sK-----~~~~~G~r~-----G~~~~~~-~~~---------------------~-~l~~~~~~~~~~~ 334 (470)
..+-.|++.|+|| ...++|.++ +|...+. +++ . ........+..+.
T Consensus 196 -~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (432)
T PRK06702 196 -EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCM 274 (432)
T ss_pred -hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCC
Confidence 1355699999999 666777776 5654421 111 1 1112333445678
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
+++....+...|+. +..+.++..++...+.+.|++.|.+.
T Consensus 275 sp~~a~l~~rgL~T-------l~lR~~r~~~Na~~la~~L~~~p~V~ 314 (432)
T PRK06702 275 SPFNAYISNIGLET-------LHLRMERHSENALAVAKWLADHERIE 314 (432)
T ss_pred CHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88877666666653 33344444577778888888776553
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=177.38 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=124.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~ 207 (470)
-..+|++.|+++. | .+..++++++++++..++.+++++||+|+++.+.|.+....+.. .|.++..++.
T Consensus 59 t~~~Le~~lA~l~----g----~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 59 TNDVLEQRVAALE----G----GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred hHHHHHHHHHHHh----C----CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 3456777777764 3 23567788888999999999999999999999999976655433 4666665553
Q ss_pred cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC
Q 012124 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 287 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~ 287 (470)
.|++.+++++++++++|++++|+||||.+++ +++|.++|+++ +++||+|++|+..... .++ .
T Consensus 131 -------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-~i~vVvD~a~a~~~~~----~p~-~-- 192 (425)
T PRK06084 131 -------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRH-GVPLIVDNTVATPVLC----RPF-E-- 192 (425)
T ss_pred -------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccC----Chh-h--
Confidence 4899999999989999999999999999999 78999999999 9999999999742211 111 1
Q ss_pred CCCCceEEEeccCcccccccceeeEEEcC
Q 012124 288 GMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
.+..+++.|++|.++.+|.++|.+++.
T Consensus 193 --~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 --HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred --cCCCEEEECchhcccccccceeEEEEe
Confidence 245599999999998788998887763
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-19 Score=178.55 Aligned_cols=346 Identities=15% Similarity=0.075 Sum_probs=215.8
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. +|.+.+++.+++.+..... ...-..+.+..+++.+.+..+. ..+++++++++++|.+
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e 116 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVI-FAGFTHEPAERLAQRLVALTPG--GLDHVFFSDSGSVAVE 116 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHH
Confidence 5778899998853 3333 7899999999987632111 0011235566677777654321 2368999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCccCHHhHhhhcc--
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLT-- 225 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~l~-- 225 (470)
.+++.... +| .+|+...-+|++....+..... .+..++....+....+++.+++.+.
T Consensus 117 ~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~ 196 (423)
T PRK05964 117 VALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence 99886421 33 5788889999986644332111 1222332211101122778888774
Q ss_pred -CCceEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 226 -EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 226 -~~~~~i~l~~-p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
+++.+|++.. .+..+|..+ +.+.+++|.++|++| |+++|.||++.++...+.. ...... +...-+.+++|.
T Consensus 197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~-~a~~~~----~v~pDi~~~~K~ 270 (423)
T PRK05964 197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRH-GVLLIFDEIATGFGRTGTL-FACEQA----GVSPDIMCLSKG 270 (423)
T ss_pred CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcch-hHHHhc----CCCCCeeeeehh
Confidence 3556666644 477788755 899999999999999 9999999999876443321 111111 111224578999
Q ss_pred ccccc-ceeeEEEcCHHHHHHHHHH------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 303 FAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 303 ~~~~G-~r~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
++ .| +++|++++++++.+.+... ....+++.+++...++.+.++.-. .++++++..+..+..++.+.+ +.
T Consensus 271 l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~-~~~~~~~~~~~g~~l~~~l~~-l~ 347 (423)
T PRK05964 271 LT-GGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE-DEPVLERVAALSAGLAEGLEP-FR 347 (423)
T ss_pred hh-cCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHh-hc
Confidence 97 56 8999999999999887531 122345678888888888776311 123344444333333333332 22
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAA 453 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~ 453 (470)
+.+.+.-.. .-|+.+.+.+.+... ......+.+.|.++ ||.+.+. .+.+|++.. .++++|+++
T Consensus 348 ~~~~i~~vr-g~Gl~~~i~l~~~~~--------~~~~~~l~~~l~~~-Gv~v~~~-----~~~lR~~p~l~~t~edId~~ 412 (423)
T PRK05964 348 DLPGVADVR-VLGAIGAVELDRPVL--------ERDGPALRAFALER-GVLLRPL-----GNTIYLMPPYIITAEELDRI 412 (423)
T ss_pred cCCCeEEee-cccEEEEEEeccCcc--------hhHHHHHHHHHHHC-CeEEEec-----CCEEEEeCCcccCHHHHHHH
Confidence 233332122 234545666653200 00245777777765 9998873 257999977 499999999
Q ss_pred HHHHHHHHHhh
Q 012124 454 VERIKKGLLTL 464 (470)
Q Consensus 454 l~~l~~~l~~~ 464 (470)
+++|+++++++
T Consensus 413 v~~l~~al~~~ 423 (423)
T PRK05964 413 TDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=171.58 Aligned_cols=213 Identities=12% Similarity=0.137 Sum_probs=153.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~ 207 (470)
-..+|++.++++. |. ++.+++.+| +.++..++ .+++|||+|++++|+|++... .+...|++++.++.
T Consensus 51 ~~~~Le~~lA~l~----g~---~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 51 TRAALEELIAVLE----GG---HAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred HHHHHHHHHHHHh----CC---CceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 3567777777765 32 234555555 56787665 577999999999999985543 34457999988874
Q ss_pred cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC
Q 012124 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 287 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~ 287 (470)
.|++.+++++++++++|++++|+||||.+.+ +++|.++|+++ |+++|+|++|....+.. ++ .
T Consensus 122 -------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~-g~~lvvD~a~~~~~~~~----p~-~-- 183 (377)
T PRK07671 122 -------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEK-GLLTIVDNTFMTPYWQS----PI-S-- 183 (377)
T ss_pred -------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCCccccCC----hh-h--
Confidence 3889999999999999999999999999988 88889999999 99999999997533321 11 1
Q ss_pred CCCCceEEEeccCccccccc-ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 288 GMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G-~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+..+++.|+||.++-++ .-.|++++ ++++++.+...+.......++.....+..- .+.+....++..+
T Consensus 184 --~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~-------l~tl~~R~~~~~~ 254 (377)
T PRK07671 184 --LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRG-------LKTLGIRMEEHET 254 (377)
T ss_pred --hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-------cChHHHHHHHHHH
Confidence 234599999999996332 33566665 567888888777766555666544333222 2234556666677
Q ss_pred HHHHHHHHhccCCCC
Q 012124 366 RRDFLVKSFGELEGV 380 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~ 380 (470)
+...+.+.|++.|++
T Consensus 255 na~~la~~L~~~~~v 269 (377)
T PRK07671 255 NSRAIAEFLNNHPAV 269 (377)
T ss_pred HHHHHHHHHHcCCCe
Confidence 888888888877654
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-18 Score=169.24 Aligned_cols=321 Identities=15% Similarity=0.171 Sum_probs=202.9
Q ss_pred EEccCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 97 IRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 97 i~l~~g~~~~~~-----~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
..|+.|.|+.+. +..-++++.+.+......+++ -..+|++++++++. .+++++++|+++++.+++
T Consensus 26 ~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~~~G~--~~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~aL 95 (438)
T PRK15407 26 KPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWLTTGR--FNDAFEKKLAEFLG--------VRYALLVNSGSSANLLAF 95 (438)
T ss_pred ccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcccCCh--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHH
Confidence 447888887654 233344555555444443432 35789999999863 247999999999999888
Q ss_pred HHh---------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCccc
Q 012124 172 LAV---------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 172 ~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~ 242 (470)
.++ ++|||+|+++.|+|+.+...+...|++++.++++. ..+.+|++.+++.+++++++|+++++ +|.
T Consensus 96 ~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~---~G~ 171 (438)
T PRK15407 96 SALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT---LGN 171 (438)
T ss_pred HHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---CCC
Confidence 875 47999999999999999999999999999999874 35679999999999989999988664 444
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcCH-H
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPK-H 318 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~~-~ 318 (470)
..+ +++|.++|+++ |++||+|++++... +.+. .+.++. .+.+.||. |.+. .|- -|+++.++ +
T Consensus 172 p~d---l~~I~~la~~~-gi~vIeDaa~a~G~~~~g~---~~G~~g-----d~~~fSf~~~k~~~-~ge-GG~l~t~d~~ 237 (438)
T PRK15407 172 PFD---LAAVKAFCDKH-NLWLIEDNCDALGSTYDGR---MTGTFG-----DIATLSFYPAHHIT-MGE-GGAVFTNDPL 237 (438)
T ss_pred hhh---HHHHHHHHHHC-CCEEEEECccchhhhcCCe---eeeccC-----ceEEEeCCCCCCcc-ccC-ceEEEECCHH
Confidence 444 88999999999 99999999998633 2221 122221 24566664 6674 443 48888754 4
Q ss_pred HHHHHHHHhhhc---------------------------------------cCCCChHHHHHHHHHHhcCCCChHHHHHH
Q 012124 319 FVAACNKIQSQF---------------------------------------TSGASSISQKAGVAALGLGYAGGEVVSKM 359 (470)
Q Consensus 319 ~~~~l~~~~~~~---------------------------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 359 (470)
+.+.+...+... ++..+.+....+..-| +.+++.
T Consensus 238 l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL-------~~l~~~ 310 (438)
T PRK15407 238 LKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQL-------EKLPGF 310 (438)
T ss_pred HHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHH-------HHHHHH
Confidence 555554443211 0111222222222222 233444
Q ss_pred HHHHHHHHHHHHHHhccCCC-Ceec-CCC---ceEEE-eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-
Q 012124 360 VKAFRERRDFLVKSFGELEG-VKMS-EPQ---GAFYL-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA- 432 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~g-~~~~-~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~- 432 (470)
.+.-++..+++.+.|.++++ +.+. .+. ..+|. .+.+++.. ..+-+++.+.|.++ ||.+.+...
T Consensus 311 ~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~Rd~l~~~L~~~-GI~~~~~~~~ 380 (438)
T PRK15407 311 IEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA---------GFTRVELVKYLEEN-KIGTRLLFAG 380 (438)
T ss_pred HHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC---------CCCHHHHHHHHHHC-CCCccccCCC
Confidence 44555566666777776654 3221 111 22322 23443210 01467888888766 887653221
Q ss_pred -------CC------C---C-------CcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 433 -------FG------D---D-------TCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 433 -------f~------~---~-------~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
|. . + ..+-|-+.. ++++++..++.|+++++
T Consensus 381 ~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 381 NLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred ccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 10 0 0 124444433 78999999999998875
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=164.43 Aligned_cols=325 Identities=19% Similarity=0.222 Sum_probs=242.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
.++.+++++.+. ..+. -++...++-+.+.+.++..++.. +.+-++++.+++.+++.++..+++|||+|++..-+
T Consensus 16 v~~~V~~am~~~----~~~h-~s~~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG 89 (383)
T COG0075 16 VPPRVLLAMARP----MVGH-RSPDFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNG 89 (383)
T ss_pred CCHHHHHHhcCC----CCCC-CCHHHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCC
Confidence 367777766553 2221 22344566666666666666642 23567778999999999999999999999999888
Q ss_pred CCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEE
Q 012124 188 WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263 (470)
Q Consensus 188 y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~ 263 (470)
..+.+ ++++.+|++++.+... .+..+|++++++++++ +.+++.+++.-.+||+..| +++|+++|++| |.+
T Consensus 90 ~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~-g~l 163 (383)
T COG0075 90 KFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEH-GAL 163 (383)
T ss_pred hHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHc-CCE
Confidence 87754 7899999999999886 4456899999999974 5677878777789999999 99999999999 999
Q ss_pred EEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc-ccceeeEEEcCHHHHHHHHHHh---------------
Q 012124 264 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQ--------------- 327 (470)
Q Consensus 264 iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~~~~~~~~l~~~~--------------- 327 (470)
+|+|.+-+. ++ .... .+. ++-.+++++--|.++. || +|++..+++..+.+....
T Consensus 164 ~iVDaVsS~---Gg-~~~~---vd~-wgiDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~ 233 (383)
T COG0075 164 LIVDAVSSL---GG-EPLK---VDE-WGIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYM 233 (383)
T ss_pred EEEEecccC---CC-cccc---hhh-cCccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHH
Confidence 999998763 22 1111 232 5667888889999963 45 789998887666553211
Q ss_pred ---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCccCC
Q 012124 328 ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGS 401 (470)
Q Consensus 328 ---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~ 401 (470)
..+.+.++....+++..+|+.- .++.++.+.+++++..+.+++.++.+ |++..... +.....+..|+.+
T Consensus 234 ~~~~~~p~Tppv~~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~-- 308 (383)
T COG0075 234 EKKGSTPYTPPVNLIYALREALDLI--LEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGV-- 308 (383)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCC--
Confidence 2344556666677777777752 25668999999999999999999998 88766521 2233456777764
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCCC
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPGV 468 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~~ 468 (470)
+..++...+++++||.+.+|..-.....+||+... ..+++..++..|+.+++++....
T Consensus 309 ---------~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~~~ 368 (383)
T COG0075 309 ---------DDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGVKV 368 (383)
T ss_pred ---------CcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 44455557888889999988765566799999887 88999999999999999876543
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-19 Score=167.69 Aligned_cols=347 Identities=16% Similarity=0.179 Sum_probs=229.2
Q ss_pred cCCCeEEccCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..+.-+.-. +|.+.+++.+++.++...-.|+ ++.-.+|+.+.++.+ ..|.|-+++++++|..
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pt----e~Ei~~Aell~~~~p---~~e~vrfvnSGTEAtm 123 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPT----ELEVELAELLIERVP---SIEKVRFVNSGTEATM 123 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcC---cccEEEEecchhHHHH
Confidence 67789999998754332 7889999999998875433343 444555555554433 4589999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cC--C-----------------EEEEecCcCCCCCccCHHhHhhhccC
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD--A-----------------TPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g--~-----------------~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+++... -..|.|+..+-||+++.+.+.. .| . .++.+|. -|++.+++++++
T Consensus 124 sAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y-------ND~~al~~~~~~ 196 (432)
T COG0001 124 SAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY-------NDLEALEEAFEE 196 (432)
T ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC-------CCHHHHHHHHHH
Confidence 8888642 2348999999999998875432 22 1 2233333 189999998854
Q ss_pred ---CceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 227 ---KSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 227 ---~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++.+|++ +...|..=+...++.++.|.++|++| |+++|.||+...|+..-.....+..+.++ +.+|.|.
T Consensus 197 ~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~-G~lLI~DEViTGFR~~~gGaq~~~gi~PD------lttlGKi 269 (432)
T COG0001 197 YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEH-GALLIFDEVITGFRVALGGAQGYYGVEPD------LTTLGKI 269 (432)
T ss_pred cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchhhcccCCcccccccCcCcc------hhhhhhh
Confidence 5666666 44577554577788999999999999 99999999999887664444555556554 7889999
Q ss_pred cccccceeeEEEcCHHHHHHHHH---HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
+| .|+++|.+.+++++++.+.. +....+++.+++...|..+.|+.-...+...+++.+.-.+.++-+.+.+.+. |
T Consensus 270 IG-GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g 347 (432)
T COG0001 270 IG-GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERH-G 347 (432)
T ss_pred hc-CCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 99 99999999999999997753 3445577889999888888887421101123333333333333333344333 5
Q ss_pred Ceec--CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHH
Q 012124 380 VKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 380 ~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l 457 (470)
+.+. ...+.|-+++.-.+...-+.......+....+...|+++ ||.+.|.. | ...=+|.++++++|+..++.+
T Consensus 348 ~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps~-~---ea~flS~ahte~di~~~~~a~ 422 (432)
T COG0001 348 IPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPSQ-F---EAGFLSTAHTEEDIDRTLEAA 422 (432)
T ss_pred CCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCcc-c---cceeeecccCHHHHHHHHHHH
Confidence 5443 323333333332111000000000011123555677776 99998864 1 234588888999999999999
Q ss_pred HHHHHhhCC
Q 012124 458 KKGLLTLRP 466 (470)
Q Consensus 458 ~~~l~~~~~ 466 (470)
.++++++..
T Consensus 423 ~~~~~~~~~ 431 (432)
T COG0001 423 DEAFKELAG 431 (432)
T ss_pred HHHHHHhhc
Confidence 999887653
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=171.59 Aligned_cols=212 Identities=14% Similarity=0.151 Sum_probs=145.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~ 208 (470)
...|++.++++. | .+..+++ ++++.++.+++ .+++|||+|++++|.|++... .+...|++++.++.
T Consensus 52 ~~~Le~~la~l~----g---~~~al~~-~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~- 121 (380)
T PRK06176 52 RFALEELIADLE----G---GVKGFAF-ASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT- 121 (380)
T ss_pred HHHHHHHHHHHh----C---CCCEEEE-CCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC-
Confidence 566777777764 3 2234555 55556888666 567999999999999986653 34567888887764
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|++.+++++++++++|++.+|+||||.+++ +++|+++|+++ +++||+|++|+...+. .++ .
T Consensus 122 ------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~-gi~vivD~t~a~~~~~----~p~-~--- 183 (380)
T PRK06176 122 ------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDH-GLLTIVDNTFATPYYQ----NPL-L--- 183 (380)
T ss_pred ------CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHc-CCEEEEECCccccccC----Ccc-c---
Confidence 3899999999999999999999999999998 88899999999 9999999999864322 111 1
Q ss_pred CCCceEEEeccCccccccc-ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G-~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+..+++.|++|.++.+| .-.|+++. ++++.+++...+.....+.++.....+..-++ .+..+.++..++
T Consensus 184 -~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~-------tl~~R~~~~~~~ 255 (380)
T PRK06176 184 -LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK-------TLGLRMEAHQKN 255 (380)
T ss_pred -cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC-------cHHHHHHHHHHH
Confidence 244589999999996444 34677776 45677777766665444445554333222221 122233333445
Q ss_pred HHHHHHHhccCCCC
Q 012124 367 RDFLVKSFGELEGV 380 (470)
Q Consensus 367 ~~~l~~~L~~~~g~ 380 (470)
...+.+.|++.|.+
T Consensus 256 a~~la~~L~~~p~v 269 (380)
T PRK06176 256 ALCVAEFLEKHPKV 269 (380)
T ss_pred HHHHHHHHHhCCCe
Confidence 55566666655443
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=176.10 Aligned_cols=168 Identities=22% Similarity=0.321 Sum_probs=131.7
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
|..-+.++++.+++++ | ..+-+++++|+++++..++.++++|||+|+++.++|.+....+...|++++.++.+
T Consensus 57 ~~g~i~~~~~~~A~~~----g---a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~ 129 (294)
T cd00615 57 PTGPIKEAQELAARAF----G---AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPE 129 (294)
T ss_pred CChHHHHHHHHHHHHh----C---CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCc
Confidence 3334567778888775 3 22345569999999999999999999999999999999999999999999999876
Q ss_pred CCCC----CccCHHhHhhhcc--CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcc
Q 012124 209 ISEN----FLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHT 281 (470)
Q Consensus 209 ~~~~----~~~d~~~l~~~l~--~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~ 281 (470)
.+.+ ..+|++.++++++ ++++++++++| ||||.+++ +++|+++|+++ |++||+|++|+. +.|.+....
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~-g~~livDeA~~~~~~~~~~~~~ 204 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHR-GLPVLVDEAHGAHFRFHPILPS 204 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhc-CCeEEEECcchhhhccCcccCc
Confidence 5443 3689999999995 46889999988 78999998 88999999999 999999999974 334322111
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
. .. ..+.++++.|++|++ +|++.|+++
T Consensus 205 ~--~~--~~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 205 S--AA--MAGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred c--hh--hcCCcEEEEchhccc--chHhHHHHH
Confidence 1 11 136789999999986 677765544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-19 Score=172.74 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=125.8
Q ss_pred CcH---HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEe
Q 012124 132 GTL---ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVIL 205 (470)
Q Consensus 132 g~~---~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v 205 (470)
|.+ .|.+.++++. | .+..+++++++.|+..++.++++|||+|++.++.|+++.. .++..|++++.+
T Consensus 45 g~p~~~~lE~~la~le----g----~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v 116 (397)
T PRK05939 45 GTPTTAALEAKITKME----G----GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMV 116 (397)
T ss_pred CCHHHHHHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEE
Confidence 555 7777777764 3 2334555556899999999999999999999999987543 456789999988
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+. .|++.+++++++++++|++++|+||||.+.+ +++|+++|+++ |++||+|++|.... .+..
T Consensus 117 ~~-------~d~e~l~~~l~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~t~a~~~-------~~~~ 178 (397)
T PRK05939 117 DA-------TDVQNVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALCRER-GLLYVVDNTMTSPW-------LFRP 178 (397)
T ss_pred CC-------CCHHHHHHhCCCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHc-CCEEEEECCccccc-------ccCc
Confidence 86 3889999999999999999999999999866 99999999999 99999999986311 1111
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
. ..+..+++.|+||.++..|.++|+++.+
T Consensus 179 ~--~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 179 K--DVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred c--ccCCEEEEecCeecccCCCCeEEEEEec
Confidence 1 1356799999999998789999998774
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-18 Score=168.32 Aligned_cols=341 Identities=15% Similarity=0.070 Sum_probs=221.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC-------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+..|+|-..++- .++.+.+++...+.+. ...|+......++.....++..+.||.. .-+|-.-+|++ |
T Consensus 49 ~~~l~LiasEN~--~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~--~anvqp~Sg~~-A 123 (493)
T PRK13580 49 RSSLKLIASENY--SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAE--HAYVQPHSGAD-A 123 (493)
T ss_pred hcCceEeccccc--CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--cccccCCCcHH-H
Confidence 455777666654 3567777777666542 1334445566677777778888888743 34666666655 5
Q ss_pred HHHHHHHhcCC-------------------------------CCeEEEcCCCCCChH-----HHHHHcCCEEEEecCcCC
Q 012124 167 ILQAVLAVCSP-------------------------------GDEVIIPAPFWVSYP-----EMARIADATPVILPTRIS 210 (470)
Q Consensus 167 l~~~~~~l~~~-------------------------------gd~Vlv~~p~y~~~~-----~~~~~~g~~~~~v~~~~~ 210 (470)
...++.++++| ||+|+-.++...++. ..+.....+.+.++++.+
T Consensus 124 n~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~ 203 (493)
T PRK13580 124 NLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD 203 (493)
T ss_pred HHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc
Confidence 66678888876 799998766554432 122223356777777644
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
+ ..+|++.+++.++++++.++++..+|-+ ...+ +++|.++|+++ |+++++|++|....+++..... .+.+..
T Consensus 204 ~-g~iD~d~l~~~~~~~~plvii~g~S~~~-~~~d---l~~i~eia~~~-gA~L~VD~AH~~Gligg~~~~~--~~~~~~ 275 (493)
T PRK13580 204 T-GLLDYDEIAALAREFKPLILVAGYSAYP-RRVN---FAKLREIADEV-GAVLMVDMAHFAGLVAGKVFTG--DEDPVP 275 (493)
T ss_pred c-CccCHHHHHHHHhhcCCEEEEeCccccC-CCcC---HHHHHHHHHHc-CCEEEEECchhhceeccccchh--hcCCCC
Confidence 3 4599999999999888888888877764 4667 88889999999 9999999999976655332110 011112
Q ss_pred CceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 370 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 370 (470)
+..|+++|++|++ .|.+.|++++++++++.+.........++.+....+++.++..-. ....++.++++.++.+.|
T Consensus 276 ~~D~vtgT~hKaL--~GP~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~--~~ef~~y~~~l~~Na~~L 351 (493)
T PRK13580 276 HADIVTTTTHKTL--RGPRGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR--TPEFQKYAQQVVDNARAL 351 (493)
T ss_pred CCcEEEeCChhhc--cCCCeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHH
Confidence 3458999999998 334469999999999988655433333333333333333333211 111255677888899999
Q ss_pred HHHhccCCCCeecCC-CceEEEeeeccCccCCcccCCCCCCCHH-HHHHHHHHcCCEEEECCCCCCC------CCcEEEE
Q 012124 371 VKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSE-SLCRYLLDKAQVALVPGDAFGD------DTCIRIS 442 (470)
Q Consensus 371 ~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~~~gI~v~pg~~f~~------~~~iRls 442 (470)
.+.|.+. |+.+... .....+++.+.+.- ... .+.+.| ++.||.+.+-..... ...|||+
T Consensus 352 a~~L~~~-G~~vv~ggTdshIV~V~lg~~~-----------~~g~~a~~~L-~e~GI~vn~i~~Ptvp~g~~~~srLRIg 418 (493)
T PRK13580 352 AEGFLKR-GARLVTGGTDNHLVLIDVTSFG-----------LTGRQAESAL-LDAGIVTNRNSIPSDPNGAWYTSGIRLG 418 (493)
T ss_pred HHHHHhc-CCCccCCCCCCCEEEEEeCCHH-----------HHHHHHHHHH-HHCCeEEccccCCCCCCCCCCCceEEec
Confidence 9999887 8876521 22344777876430 123 344454 556999875433221 4579999
Q ss_pred eec------CHHHHHHHHHHHHHHHHhh
Q 012124 443 YAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 443 ~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
... ++++|++.++.|.++++..
T Consensus 419 ~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 419 TPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred cchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 765 5799999999999888753
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=170.69 Aligned_cols=358 Identities=14% Similarity=0.086 Sum_probs=214.2
Q ss_pred cCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCc-EEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~-i~it~g~~~al 167 (470)
+|+.++|+..|.... .. ++.+.+++.+++.+....+. ..-..+.+..+++.+....+....... ++.++++++|.
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~ 115 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHT-LDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAV 115 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccc-cccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHH
Confidence 677889999886433 33 78999999999876332211 111235666777777654431111134 45568999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCCCC--Cc----cCH----HhHhh
Q 012124 168 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISEN--FL----LDP----KVLES 222 (470)
Q Consensus 168 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~--~~----~d~----~~l~~ 222 (470)
+.+++... ....+|+...-+|++....+... |. .+..++....-. ++ -+. +.+++
T Consensus 116 e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (442)
T TIGR00709 116 EAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFEN 195 (442)
T ss_pred HHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 99988643 22367888899999887554432 20 122233211000 00 011 12333
Q ss_pred hcc------CCceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEE
Q 012124 223 KLT------EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 295 (470)
Q Consensus 223 ~l~------~~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 295 (470)
.+. +++.++++... +|+....+|++.+++|.++|++| |+++|.||++.+|...+. ......+.- ... |+
T Consensus 196 ~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~-~~a~~~~gv-~PD-iv 271 (442)
T TIGR00709 196 FIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKH-DIKLILDEVQAGFGRSGT-MFAFEHAGI-EPD-FV 271 (442)
T ss_pred HHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCc-hhHHHHcCC-CCc-EE
Confidence 332 35667776444 45555668999999999999999 999999999998755442 222222221 112 22
Q ss_pred EeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+++|.++ .|+++|+++++++ ++.+.......+++.+++.+.++.+.|+.- ++ ..+.+.++++.+++.+.|+
T Consensus 272 --~~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~L~ 342 (442)
T TIGR00709 272 --VMSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYW---KD--DNLAQNAQERGERITSFLD 342 (442)
T ss_pred --EEccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHH
Confidence 3899998 6999999999987 454432233467788999999999988641 11 1334455555555655555
Q ss_pred c----CCCCeecCCCceEEEeeeccCccCC-cccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 376 E----LEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 376 ~----~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~--~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
+ .+.+ .....-|+++.+++.+.... ....... ......+...++++ ||.+.+.... .+.+|+.... +
T Consensus 343 ~l~~~~~~v-~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~--~~~l~~~Ppl~it 418 (442)
T TIGR00709 343 DMIKEHPCI-GNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFEN-GLLLETGGRE--GEVFRLLCPITID 418 (442)
T ss_pred HHHHhCCCe-eeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEECCCCCC
Confidence 4 2212 11223466666776432000 0000000 00134566666655 9998764322 4678887665 9
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 012124 447 LTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~~~~ 467 (470)
++++++++++|+++++++..+
T Consensus 419 ~~ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 419 QEECEEGISRFKQAVEEALAE 439 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876443
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-18 Score=168.48 Aligned_cols=334 Identities=14% Similarity=0.131 Sum_probs=217.3
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||..|. ..+.. +|.+.+++.+++.+....+ .....++...+++++.+.. ..+.+++++++++|.+
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~--~~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e 107 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPS--PAFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANE 107 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccccc--ccccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHH
Confidence 577889999864 22333 7889999999887533222 2234678888999887532 2368999999999999
Q ss_pred HHHHHhc------CCC-CeEEEcCCCCCChHHH-HHHcCCEEEE---ecCcCCCCC----ccCHHhHhhhccCCceEEEE
Q 012124 169 QAVLAVC------SPG-DEVIIPAPFWVSYPEM-ARIADATPVI---LPTRISENF----LLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 169 ~~~~~l~------~~g-d~Vlv~~p~y~~~~~~-~~~~g~~~~~---v~~~~~~~~----~~d~~~l~~~l~~~~~~i~l 233 (470)
.+++... ++| +.|+..+.+|++.... +...|..... .|.. .++ ..|++.+++.+.+++++|++
T Consensus 108 ~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~aavi~ 185 (395)
T PRK03715 108 GAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASVEKLITDKTVAVML 185 (395)
T ss_pred HHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHHHHHcCCCceEEEE
Confidence 9998764 134 5788888888886543 3333322111 1111 011 13789999999877888877
Q ss_pred cCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccccccceee
Q 012124 234 CSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 234 ~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
...++..|... +++.+++|.++|++| |+++|.||++..+...+.... ....+.+ | +.+|+|.++ .|+.+|
T Consensus 186 Epv~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~GRtG~~~a~~~~gv~P--D----i~t~gK~lg-~G~p~~ 257 (395)
T PRK03715 186 EPVQGEGGVIPATREFMQQLRALTKQH-GLLLIVDEVQTGCGRTGTLFAYELSGIEP--D----IMTLGKGIG-GGVPLA 257 (395)
T ss_pred eCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCcchhhHhhcCCCC--c----eeeehhhhh-CCcceE
Confidence 76677788764 799999999999999 999999999997533332110 1112222 2 567899998 789999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCCeecCCCce
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGA 388 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~g 388 (470)
.+++++++.. +.......+++.+++...++.+.|+.- + -.++.+..+++-+++.+.|+++ .++.... .-|
T Consensus 258 av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l---~--~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G~G 330 (395)
T PRK03715 258 ALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQL---L--APGFLEGVRARGEYLKEKLLELSEERGLEGER-GEG 330 (395)
T ss_pred EEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHHHHHHHHHhhcCCcCeEE-cce
Confidence 9999888752 221122345567888888887777641 1 1234445555555555555542 1343222 335
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHH--cCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD--KAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+.+-+.+.+. ....+.+.+.+ +.||.+.+.. .+.+|++... +++++++++++|+++++++
T Consensus 331 lm~~i~l~~~------------~~~~~~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 331 LLRALLLGKD------------IGPQIVEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred eEEEEEecCc------------hHHHHHHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 6566777531 12334333221 1289886532 3689999876 9999999999999998764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-18 Score=169.04 Aligned_cols=354 Identities=15% Similarity=0.154 Sum_probs=214.3
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+... +.......+....+++.+.+..+.. ..+.+++++++++|.+
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p~~-~~~~v~f~~SGseA~e 117 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIH-YTPAYMYHEPLVRLAKKLCELAPGD-FEKRVTFGLSGSDAND 117 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHH
Confidence 6778999988753 3333 78999999999875321 1111122355566666666543211 1258999999999999
Q ss_pred HHHHHhc-CCC-CeEEEcCCCCCChHHHHH-HcCC-------------EEEEecCcCCCC--Cc-cC-------HHhHhh
Q 012124 169 QAVLAVC-SPG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISEN--FL-LD-------PKVLES 222 (470)
Q Consensus 169 ~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~~--~~-~d-------~~~l~~ 222 (470)
.+++... -.| ..|+..+-+|++...... ..+. .++.+|...... +. .+ ++.+++
T Consensus 118 ~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK08593 118 GIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE 197 (445)
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHH
Confidence 9988632 123 568888888988764332 2221 122333221100 00 01 234444
Q ss_pred hcc-----CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc--ccCCCCCceE
Q 012124 223 KLT-----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERTL 294 (470)
Q Consensus 223 ~l~-----~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~--~~~~~~~~~i 294 (470)
.+. +++.+|++...+...|.. .+++.+++|.++|++| |+++|.||++..|...+.. .... .+.+ +
T Consensus 198 ~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tg~GrtG~~-~a~~~~gv~p--D--- 270 (445)
T PRK08593 198 MFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH-GILFAVDDIQQGLGRTGKW-SSISHFNITP--D--- 270 (445)
T ss_pred HHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchH-HHHHhcCCCC--C---
Confidence 332 456677776667777875 7899999999999999 9999999999876433321 1111 2222 2
Q ss_pred EEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
+-+|+|.++ .|+++|++++++++++.+......++++.+++...++.+.|+.-.. ++.+++.++.-+..++.+.+..
T Consensus 271 -i~t~gK~l~-~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~ 347 (445)
T PRK08593 271 -LMSFGKSLA-GGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-ESLLQRSAEKGEYARKRFDQWV 347 (445)
T ss_pred -Eeeeccccc-CCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 447999998 8999999999999998876434445777899998888888864211 2223333333233333333322
Q ss_pred ccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHH
Q 012124 375 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQA 452 (470)
Q Consensus 375 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~ 452 (470)
++.+ +......-|+++.+.+....... .........+++.++++ ||.+.+.. .+.+|++.+. +++++++
T Consensus 348 ~~~~-~v~~vrG~Gl~~gi~l~~~~~~~---~~~~~~~~~~~~~~~~~-Gv~~~~~~----~~~lr~~p~l~~t~~~id~ 418 (445)
T PRK08593 348 SKYN-FVGDVRGYGLSIGIDIVSDKKLK---TRDNEAALKICNYCFEH-GVVIIAVA----GNVLRFQPPLVITYEQLDT 418 (445)
T ss_pred hcCC-cEEEEeccceEEEEEEecCCCcC---CCcHHHHHHHHHHHHHC-CeEEeccC----CCEEEEECCCccCHHHHHH
Confidence 3333 21112233555555553210000 00000234677777765 99886631 3678988775 9999999
Q ss_pred HHHHHHHHHHhhCC
Q 012124 453 AVERIKKGLLTLRP 466 (470)
Q Consensus 453 ~l~~l~~~l~~~~~ 466 (470)
++++|.++++++..
T Consensus 419 ~~~~l~~~l~~~~~ 432 (445)
T PRK08593 419 ALNTIEQAFTALEA 432 (445)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-18 Score=163.33 Aligned_cols=354 Identities=15% Similarity=0.161 Sum_probs=229.0
Q ss_pred HHHHHHHhcCCCeEEccCCCCCCC--C---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE
Q 012124 84 DQATALAQAGVSVIRLAAGEPDFD--T---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158 (470)
Q Consensus 84 ~~~~~~~~~~~~~i~l~~g~~~~~--~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 158 (470)
++.+.+.+.|.+...|...+-... + ..++.++....+..+.-.|..++.+.+|.+++++++ ..++++
T Consensus 19 ~r~~~l~~ag~n~f~l~~~~v~iDLltDsgT~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~--------G~~~av 90 (450)
T TIGR02618 19 EREKKMQEAGYNTFLLNSEDVYIDLLTDSGTNAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELY--------GFKYVV 90 (450)
T ss_pred HHHHHHHHcCCCcccCccCceEEEcccCCCcHHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHH--------CCCeEE
Confidence 344555566666666666553221 1 255655533333344556988889999999999996 335899
Q ss_pred EecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH-HHHHcCCEEEEecCcC--------CCCCccCHHhHhhhccC---
Q 012124 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE-MARIADATPVILPTRI--------SENFLLDPKVLESKLTE--- 226 (470)
Q Consensus 159 it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~--------~~~~~~d~~~l~~~l~~--- 226 (470)
.+++++.|+.+++...++|||.| +.++|..... .++..|+..+.++.+. ...+.+|++.|++++++
T Consensus 91 ~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~ 168 (450)
T TIGR02618 91 PTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGA 168 (450)
T ss_pred EcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC
Confidence 99999999998877788999987 6677755444 4788999777775431 23456899999999975
Q ss_pred -CceEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEEecccccc--cc-----CCCCccccc----ccCCCCCce
Q 012124 227 -KSRLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI--IY-----APATHTSFA----SLPGMWERT 293 (470)
Q Consensus 227 -~~~~i~l~~p~n-PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~--~~-----~~~~~~~~~----~~~~~~~~~ 293 (470)
++++|.+.+++| ..|.++|.++++++.++|++| |+.||+|.+...- .+ .+....++. .+.. .-.
T Consensus 169 ~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~-Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~--~aD 245 (450)
T TIGR02618 169 DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAH-GIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMS--YAD 245 (450)
T ss_pred cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHc-CCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhc--cCc
Confidence 344677777777 568999999999999999999 9999999987541 11 111122331 1111 112
Q ss_pred EEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhccC----CC-ChHHHHHHHHHHhcCCCChHHHHHHHHHH-HHH
Q 012124 294 LTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTS----GA-SSISQKAGVAALGLGYAGGEVVSKMVKAF-RER 366 (470)
Q Consensus 294 i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~~~----~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~-~~~ 366 (470)
.+..|..|..+.|- -|+++ .+++++++++.....+.. +. ..-...+++..|. +++++....+ ...
T Consensus 246 ~~~~S~~Kd~~~~~--GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~------e~~~~~y~~~r~~~ 317 (450)
T TIGR02618 246 GCTMSGKKDCLVNI--GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIR------EAVDYEYIEHRVKQ 317 (450)
T ss_pred EEEEeeccCCCCCC--ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHH------HhhhHHHHHHHHHH
Confidence 47788888876441 26666 588899988877544311 11 1112223333333 3333322222 234
Q ss_pred HHHHHHHhccCCCCeecCCCceEEEeeeccCccC-CcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCC-CC--------
Q 012124 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVP-GDAF-GD-------- 435 (470)
Q Consensus 367 ~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f-~~-------- 435 (470)
.++|.+.|.+. |+.+..|.+|..++++...... .+... -....++..|..+.||--.- |+.. +.
T Consensus 318 a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~----~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~ 392 (450)
T TIGR02618 318 VRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQ----FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHH 392 (450)
T ss_pred HHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhh----ChHHHHHHHHHHHhCccEEeecceecccCCCCCccc
Confidence 67888888888 9988778888878887533210 00111 15678888888788884432 3321 11
Q ss_pred ---CCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012124 436 ---DTCIRISYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 436 ---~~~iRls~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
-.-+||++.. +.+.++-..++|..+.++
T Consensus 393 ~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 393 RPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred CCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1369999986 888899999998888764
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-18 Score=169.30 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=210.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCC-CCCC---CcC---cHHHHHHHHHHHHHHcCCCCCCCcEEEe---cCh
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTP---NAG---TLELRSAICHKLKEENGLSYTPDQILVS---NGA 163 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~y~~---~~g---~~~lr~~ia~~l~~~~g~~~~~~~i~it---~g~ 163 (470)
+..|+|...++- .++.+++++...+.+... +++. ..| ...+.+...+.+.+.+| ++++++.++ +|+
T Consensus 34 ~~~l~l~~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~--a~~~~~~~~~~~~sg 109 (452)
T PTZ00094 34 IEGLELIASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFG--LDPEEWGVNVQPYSG 109 (452)
T ss_pred HcCeeEeccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhC--CCcccceeecCCCch
Confidence 455888777764 466788888777754221 2211 122 22222222334445556 356677666 788
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----------HcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEE
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----------IADATPVILPTRISENFLLDPKVLESKLTE-KSRLLI 232 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----------~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~ 232 (470)
+++...++.+++++||+|++.+..+.++..... ..+.+++.++++.+ +.+|++.|++.++. ++++++
T Consensus 110 t~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~~L~~~l~~~~~~lvi 187 (452)
T PTZ00094 110 SPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYDKLEELAKAFRPKLII 187 (452)
T ss_pred HHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHHHHHHHHHHhCCCEEE
Confidence 899999999999999999998777766543221 11234455556543 45999999999954 677666
Q ss_pred EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 233 l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+. ++.+|...| +++|.++|+++ |+++++|++++.........+ .+- .+..++++|++|+++ |.+.|+
T Consensus 188 ~~--~s~~g~~~d---i~~I~~i~~~~-ga~l~vDaaq~~G~i~~~~~~----~~~-~~~D~l~~S~hK~l~--GP~Gg~ 254 (452)
T PTZ00094 188 AG--ASAYPRDID---YKRFREICDSV-GAYLMADIAHTSGLVAAGVLP----SPF-PYADVVTTTTHKSLR--GPRSGL 254 (452)
T ss_pred Ee--CCCCCCccC---HHHHHHHHHHc-CCEEEEeccchhccccCCCCC----CCC-CCCcEEEcCCccCCC--CCCceE
Confidence 53 335999999 77888999999 999999999986444321111 111 134588999999872 333488
Q ss_pred EEcCHHHHHHHHHHh-----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 313 IAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 313 ~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
++..+++.+.+.... ..+..+++.....++..+++.- .....++.+++..++.+++.+.|.+. |+.+..+..
T Consensus 255 l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~--~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~ 331 (452)
T PTZ00094 255 IFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEV--QSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGT 331 (452)
T ss_pred EEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCC
Confidence 887765554333211 1111234555555555556531 02345567788888999999999876 777654221
Q ss_pred -eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCCCC----CCCcEEEEeec------CHHHHHHHHH
Q 012124 388 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFG----DDTCIRISYAA------SLTTLQAAVE 455 (470)
Q Consensus 388 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~-pg~~f~----~~~~iRls~~~------~~~~i~~~l~ 455 (470)
.....+.+... ..+..++...| +++||.+. ++..+. .++++|+++.. +++||+.+++
T Consensus 332 ~~~~~~v~~~~~----------~~~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~ 400 (452)
T PTZ00094 332 DNHLVLVDLRPF----------GITGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVAD 400 (452)
T ss_pred CCceEeecCCcC----------CCCHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHH
Confidence 22234444321 01456666655 56699994 443332 24789999864 3899999999
Q ss_pred HHHHHHHh
Q 012124 456 RIKKGLLT 463 (470)
Q Consensus 456 ~l~~~l~~ 463 (470)
.|.++++.
T Consensus 401 ~l~~~~~~ 408 (452)
T PTZ00094 401 FLDRAVKL 408 (452)
T ss_pred HHHHHHHH
Confidence 99998874
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-18 Score=167.26 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=210.2
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChH-HHHHHHHHHhcC---CCCeEEEcCCCCCChHHHHHHcCCEEEEecC-
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS---PGDEVIIPAPFWVSYPEMARIADATPVILPT- 207 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~-~al~~~~~~l~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~- 207 (470)
...+...+.+.+.+..|.+ +-+..++++|++ .++.+++.++-. +||.|+++.-+|.+....+...|++++.++.
T Consensus 103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeee
Confidence 4566777777777667753 224688888888 588777776642 5899999999999999999999999999995
Q ss_pred cCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc-
Q 012124 208 RISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF- 283 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~- 283 (470)
..++++.+|++.|++++++ +..++++.+|+ |+.....+++++|+++|++| |+++|+|++|+..... ...+
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~-gI~lIvDaAyg~~~~~---~~~~~ 255 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANY-DIPHIVNNAYGLQSNK---YMELI 255 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHc-CCEEEEECcCcCcChh---hhhhh
Confidence 2346788999999999975 44566666665 45545556699999999999 9999999999852210 0011
Q ss_pred -cccCCCCCc-eEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 284 -ASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 284 -~~~~~~~~~-~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
..+. .++ .+++.|++|.+.+||. .|.++. ++++++.+..... ....+.+.|.+...++.. +.+.++++.
T Consensus 256 ~~g~~--~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~--g~~~~s~~~~~~~~ll~~---G~~g~~~li 327 (444)
T TIGR03531 256 NKAIK--VGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYP--GRASASPSLDVLITLLSL---GSKGYLELL 327 (444)
T ss_pred hcccc--ccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhcc--CCCCChHHHHHHHHHHHh---CHHHHHHHH
Confidence 0111 122 5778899999987776 344445 7788887776432 223456778888888876 478889999
Q ss_pred HHHHHHHHHHHHHhccC---CCCeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE----EEECCC-
Q 012124 361 KAFRERRDFLVKSFGEL---EGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV----ALVPGD- 431 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~---~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI----~v~pg~- 431 (470)
+++.++++++.+.|+++ -|.++.. |...+.+.+.+.... ..+...+...|..+ +| .|.||.
T Consensus 328 ~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~---------~~~~~~~g~~l~~~-~v~g~r~v~~~~~ 397 (444)
T TIGR03531 328 KERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK---------GKDPTMLGSMLYSR-RVTGPRVVTNGDS 397 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc---------ccCHHHHHHHHHhC-CCCCceeecCCCc
Confidence 99999999999999875 2555543 344455555554221 01567777777655 44 245655
Q ss_pred ------CC---CC------CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 432 ------AF---GD------DTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 432 ------~f---~~------~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
.| +. -.|+-++.+. +.+|++.++.+|++++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 398 KTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred eEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 23 11 1255555443 8899999999998763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=165.91 Aligned_cols=335 Identities=16% Similarity=0.078 Sum_probs=200.7
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHH-HcCCCCCCC---CcCcHHHHHHHHH----HHHHHcCCCCCCCcE-EEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAI-REGFTRYTP---NAGTLELRSAICH----KLKEENGLSYTPDQI-LVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~-~~~~~~y~~---~~g~~~lr~~ia~----~l~~~~g~~~~~~~i-~it~g~~ 164 (470)
++.++|...++- .+|.+++++...+ .+...+|+. ..| .+..+.+.+ .+.+.+|. +.. +.+++++
T Consensus 28 ~~~~~l~~sen~--~~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~----~~alv~~~SG~ 100 (416)
T PRK13034 28 QDHLELIASENF--TSPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGC----DYANVQPHSGS 100 (416)
T ss_pred hcCeeecccccC--CCHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCC----CceEEecCCcH
Confidence 345777666654 3788888888875 332121111 123 233444444 55555553 245 4467888
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCCh-HHHHHH--cCCEE--EEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCC
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSY-PEMARI--ADATP--VILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSN 238 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~-~~~~~~--~g~~~--~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~n 238 (470)
.|+..++.++++|||+|+++..+|.+. ...++. .+... +.++++.. ++.+|++.+++.++ .++++|++..+.
T Consensus 101 ~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~klVi~~~~~- 178 (416)
T PRK13034 101 QANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEHKPKLIIAGFSA- 178 (416)
T ss_pred HHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhcCCeEEEECCCc-
Confidence 999999999999999999999988763 221221 12222 34444332 34589999999884 367888765554
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
+|...+ +.+|.++|++| |+++|+|++++...+.... ....+ ..-.++++|++|.++.+ .-|++++.++
T Consensus 179 -~g~~~d---l~~l~~la~~~-g~~livD~Aha~G~~~~g~--~~~~~---~~~Di~~~s~~K~l~g~--~GG~v~~~~~ 246 (416)
T PRK13034 179 -YPRELD---FARFREIADEV-GALLMVDMAHIAGLVAAGE--HPNPF---PHAHVVTTTTHKTLRGP--RGGMILTNDE 246 (416)
T ss_pred -cccccC---HHHHHHHHHHc-CCEEEEeCcccccCcccCC--CCCCC---CCceEEEEeCcccCCCC--CCeEEEECcH
Confidence 456666 77888889999 9999999998864443211 11111 23458999999999312 2477777654
Q ss_pred H-HHHHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeec
Q 012124 319 F-VAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDF 395 (470)
Q Consensus 319 ~-~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~ 395 (470)
. .+.++...... ..+.++....++...+..- ......+.++++.++.+++.+.|.+. |+.+..+ .....+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~ 323 (416)
T PRK13034 247 EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEA--LQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDL 323 (416)
T ss_pred HHHHHHHhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEc
Confidence 4 44444322211 1122333333333222210 01223355688888999999999888 8877542 2233355555
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------CCCCCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------AFGDDTCIRISYAA------SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~------~f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~~ 463 (470)
...- .+...+.+.| ++.||.+.+-. .-..+..+|++++. ++++++++++.|++++.+
T Consensus 324 ~~~~----------~~~~~~~~~L-~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 324 RPKG----------LSGKDAEQAL-ERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CCCC----------CCHHHHHHHH-HhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 4320 0344555655 45599887511 11124579998653 679999999999988764
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=166.06 Aligned_cols=335 Identities=13% Similarity=0.091 Sum_probs=211.5
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..| ...+.. +|.+.+++.+++.+..+. ...-..+.+..+++.+.+..+. ..+.+++++++++|.+
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~--~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~SGsEA~e 148 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLH--SQELLDPLRALLAKTLAALTPG--KLKYSFFCNSGTESVE 148 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCc--ccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHHHH
Confidence 67789999888 444544 788999999998753211 1112245566677776654331 2267999999999999
Q ss_pred HHHHHhcC----CC-CeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhcc-----
Q 012124 169 QAVLAVCS----PG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT----- 225 (470)
Q Consensus 169 ~~~~~l~~----~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~----- 225 (470)
.+++.... .| ..|+....+|++..........+ +..+|. .|.+.+++.++
T Consensus 149 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-------~d~~~~~~~l~~~~~~ 221 (442)
T TIGR03372 149 AALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-------GDIEAMLKALNECKKT 221 (442)
T ss_pred HHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-------CCHHHHHHHHHHHhcC
Confidence 99886432 23 67888999999876544332211 112221 25677766663
Q ss_pred -CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc--cccCCCCCceEEEeccCc
Q 012124 226 -EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 -~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~S~sK 301 (470)
+++.+|++...+...|.. .+++.++++.++|++| |+++|.||++..|.-.+. .... ..+.+ | +-+|+|
T Consensus 222 ~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~-~~a~e~~gv~P--D----ivt~gK 293 (442)
T TIGR03372 222 GDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEF-GALLILDEVQTGMGRTGK-MFACEHEGVQP--D----ILCLAK 293 (442)
T ss_pred CCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeecccCCCcccc-chhhhhcCCCC--C----eeeehh
Confidence 245666665556666764 4788999999999999 999999999987532222 1111 11222 2 345899
Q ss_pred cccccc-ceeeEEEcCHHHHHHHHH--HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 302 AFAMTG-WRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 302 ~~~~~G-~r~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
.+| .| +++|.+++.+++.+.+.. .....+++.++++..++.+.|+.-.. ++..++.++.-...++.|.+...+.|
T Consensus 294 ~lg-~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-~~l~~~~~~~G~~l~~~L~~l~~~~~ 371 (442)
T TIGR03372 294 ALG-GGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-KNLPAQAAIKGDFLLDGFQQLAAEYP 371 (442)
T ss_pred hhc-CCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 998 88 699999999999887742 12345667789888888887764110 12233333322223333333323343
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~ 456 (470)
..-......|+++.+.+.+.. ....+++.|+++ ||.+.+... ..+.+|+.... +++++++++++
T Consensus 372 ~~i~~vRG~Gl~~giel~~~~-----------~~~~i~~~l~~~-Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~ 437 (442)
T TIGR03372 372 DLIIEARGKGLLMAIEFRDNE-----------IGYAFAKELFQQ-NILVAGTLN--NAKSIRIEPPLTITIEQCALVIKA 437 (442)
T ss_pred CceEEEecceEEEEEEeCChH-----------HHHHHHHHHHHC-CcEEeecCC--CCCEEEEECCcccCHHHHHHHHHH
Confidence 221111234676777875420 345678888765 998865321 24689988775 99999999999
Q ss_pred HHHHH
Q 012124 457 IKKGL 461 (470)
Q Consensus 457 l~~~l 461 (470)
|++++
T Consensus 438 l~~~~ 442 (442)
T TIGR03372 438 AKDAL 442 (442)
T ss_pred HHHhC
Confidence 98753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=167.99 Aligned_cols=355 Identities=13% Similarity=0.130 Sum_probs=216.9
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+..+ +.......+....+++.+.+..+ ...+.+++++++++|.+
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseAve 126 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAF-FPLWSYAHPPAIELAERLAALAP--GDLNRVFFTTGGSEAVE 126 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcC-ccccccCCHHHHHHHHHHHHhCC--CCcCEEEEcCCcHHHHH
Confidence 6778999988852 2333 78899999999876321 11111223555666666665332 12368999999999999
Q ss_pred HHHHHhcC-------C-CCeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCCC---CCccC--------
Q 012124 169 QAVLAVCS-------P-GDEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE---NFLLD-------- 216 (470)
Q Consensus 169 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~---~~~~d-------- 216 (470)
.+++.... + ..+|+...-+|++....+... |. .+..+|....- .++-+
T Consensus 127 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
T PRK06541 127 SAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWA 206 (460)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHH
Confidence 98886431 1 367888888898876433321 11 12223221100 01112
Q ss_pred HHhHhhhcc---CCceEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT---EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~---~~~~~i~l~~p-~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.+++.+. .+..+.++..| ++++|... +.+.+++|.++|++| |+++|.||++..|...+.. .....+.- ..
T Consensus 207 ~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tGfGR~G~~-~a~~~~gv-~P 283 (460)
T PRK06541 207 ADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRY-DVLLVSDEVICAFGRLGEM-FGCERFGY-VP 283 (460)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchh-hhhhhcCC-CC
Confidence 356777764 23344445555 89999865 599999999999999 9999999999776222211 11111111 11
Q ss_pred ceEEEeccCcccccccc-eeeEEEcCHHHHHHHHHHh----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
. +-+|+|.++ .|+ ++|++++++++++.+.... ...+++.+++...++.+.|+.- . -+...+..+++
T Consensus 284 D---ivt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l---~--~~~~~~~~~~~ 354 (460)
T PRK06541 284 D---IITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIF---E--REGLLDHVRDN 354 (460)
T ss_pred C---EEEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHH---H--hccHHHHHHHH
Confidence 1 335899998 897 9999999999988875421 2236667888888887777641 1 12345666777
Q ss_pred HHHHHHHhccCCCCee--cCCCceEEEeeeccCccCCcccCCCCCC----CHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012124 367 RDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYYGSEAEGFGKIE----NSESLCRYLLDKAQVALVPGDAFGDDTCIR 440 (470)
Q Consensus 367 ~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gI~v~pg~~f~~~~~iR 440 (470)
.+++.+.|+++....+ .....|.++.+.+.+..... ....... ....+.+.|+++ ||.+.+.. . ..+.+|
T Consensus 355 g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-Gi~~~~~~-~-g~~~lr 430 (460)
T PRK06541 355 EPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATK-ETFTDDESERLLRGFLSPALFEA-GLYCRADD-R-GDPVVQ 430 (460)
T ss_pred HHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccc-cCCcchhhhhhHHHHHHHHHHhC-CeEEEecC-C-CCCEEE
Confidence 7777777766522211 11233555666663210000 0000000 012456667665 99998731 1 136799
Q ss_pred EEee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 441 ISYA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 441 ls~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|+.. .+++++++++++|.++++++.
T Consensus 431 l~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 431 LAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9988 499999999999999998754
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=154.99 Aligned_cols=324 Identities=18% Similarity=0.182 Sum_probs=206.8
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
++|.+.+.. .+.+++++++.++-..+...|+.+ +.-+++.+++++.+|. +.++++.++|++..+++.+.++
T Consensus 2 ~~f~SDn~~-g~~~~m~eam~~a~~~~~~~YG~D----~~~~~~e~~~ae~~g~----~a~~Fv~sGT~aN~lal~~~~~ 72 (342)
T COG2008 2 IDFRSDNVA-GPTPEMREALAAANAVGDDVYGED----PTTNALEQRIAELFGK----EAALFVPSGTQANQLALAAHCQ 72 (342)
T ss_pred CccccCccC-CCCHHHHHHHHhccccCCCCCCCC----HHHHHHHHHHHHHhCC----ceEEEecCccHHHHHHHHHhcC
Confidence 455555443 356788888887754456667554 5555555555555553 6899999999999999999999
Q ss_pred CCCeEEEcCCCCCChHH--HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHH
Q 012124 177 PGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
||+.|++..-+|..... ..+.++ .+.+++..+..+..+++|.++..+.. .+.++++.+.+|-.|.++|.++
T Consensus 73 ~~~~vi~~~~aHi~~~E~Ga~~~~~-~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~e 151 (342)
T COG2008 73 PGESVICHETAHIYTDECGAPEFFG-GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDE 151 (342)
T ss_pred CCCeEEEeccccceecccCcHHHHc-CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHH
Confidence 99999999887765543 233333 12234444445567999999998753 3455666566658899999999
Q ss_pred HHHHHHHHHhCCCEEEEEecc--ccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHH
Q 012124 249 LDEIARIVAKHPRLLVLSDEI--YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNK 325 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~--~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~ 325 (470)
+++|.++|++| ++.|..|.+ +..+...+ ++...+.. .-.++.-++||..+.|+ |.++ ++.++++++..
T Consensus 152 l~~i~~~~k~~-~l~LHmDGAR~~nA~valg---~~~~~~~~--~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~ 222 (342)
T COG2008 152 LEAISAVCKEH-GLPLHMDGARLANALVALG---VALKTIKS--YVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARR 222 (342)
T ss_pred HHHHHHHHHHh-CCceeechHHHHHHHHHcC---CCHHHHHh--hCCEEEEecccCCccee---eeEEEcCHHHHHHHHH
Confidence 99999999999 999999987 33333223 23333322 12244445889987554 6554 78999999887
Q ss_pred HhhhccCCCChHH--HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccCccCCc
Q 012124 326 IQSQFTSGASSIS--QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSE 402 (470)
Q Consensus 326 ~~~~~~~~~~~~~--q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~ 402 (470)
++.......+... ......+|++ +-|.... .+-....+.|.+.|+..+|+++..| ++++ +|+++++..
T Consensus 223 ~rK~~Ggl~~k~r~laA~~~~~l~~----~~~~~~~-~Han~mA~~La~~~~~~~G~~~~~~~~tN~-vf~~l~~~~--- 293 (342)
T COG2008 223 WRKRAGGLMRKARFLAAQGLYALED----DVWRLAA-DHANAMAARLAEGLEAKPGVKLAFPVETNM-VFVRLPESA--- 293 (342)
T ss_pred HHHHhcccHhhhhHHHHHHHHHHhc----cHHHHHH-HHHHHHHHHHHHhhhhcCCceeccCCcccE-EEEECChHH---
Confidence 7665554444333 3333455554 2222221 1112236778888887789988765 5555 788887531
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
.+...+...+. ..|+.+.++. .-+|+..+. +++++++++..+++++
T Consensus 294 -------i~~l~~~~~~~-~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 294 -------IEALRLAGALF-YRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred -------HHHHHhhchhh-eeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 01111111222 2244443322 358888776 8899999998887764
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-17 Score=160.31 Aligned_cols=315 Identities=12% Similarity=0.124 Sum_probs=217.8
Q ss_pred ChHHHHHHHHHHHHc----CCCCCCCCcCcH---HHHHHHHHHHHHHcCCCCCCCcEEEecC-hHHHHHHHHHHhcCCCC
Q 012124 108 TPVLIAEAGINAIRE----GFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNG-AKQSILQAVLAVCSPGD 179 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~----~~~~y~~~~g~~---~lr~~ia~~l~~~~g~~~~~~~i~it~g-~~~al~~~~~~l~~~gd 179 (470)
.|..+++++.+.+.+ +...|....-.+ ++-+.+.+.+++.++.+ ...+|++++| ++.+++.++..++.+||
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 477888888888874 222232222233 66666777777777742 3357888776 99999999999999999
Q ss_pred eEEEcCCCCCChH--HHHHHcCCEEEEecCcCCC--CCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 180 EVIIPAPFWVSYP--EMARIADATPVILPTRISE--NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 180 ~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
++++..-+..+.. ++++..|+ +..+..++.. +..++++.++ +++++++|.++...+.||+..+ ++
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l 150 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------EL 150 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------ee
Confidence 9988777666543 57788898 7777754222 2235666555 3468899999999999999775 55
Q ss_pred HHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH---------
Q 012124 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI--------- 326 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~--------- 326 (470)
++.+ ++++++|.+.+. +..+..+..+ + +++.|..|.+|.|| +|++++++++++++...
T Consensus 151 ~~~~-~~l~iVDavss~----g~~~id~~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~ 217 (349)
T TIGR01364 151 PDVK-NAPLVADMSSNI----LSRPIDVSKF----G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKI 217 (349)
T ss_pred cccC-CCeEEEEccccc----cCccCCHHHc----c--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHH
Confidence 6678 899999999875 2222333322 3 88889999998666 89999999888765211
Q ss_pred -h--hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecC--C--CceEEEeeeccCc
Q 012124 327 -Q--SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLFIDFSTY 398 (470)
Q Consensus 327 -~--~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~--~~g~~~~~~~~~~ 398 (470)
. .....+++.....++.++|+.- .+. .++.+.++.++..+++++.|++++|+.... + .++..+.+.+++.
T Consensus 218 ~~~~~~~~~Tp~~~~i~al~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~ 295 (349)
T TIGR01364 218 HAENDSMYNTPPTFAIYVSGLVFKWL--KEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE 295 (349)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh
Confidence 1 1112356666667777777641 133 488999999999999999999997763331 1 2324355566532
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
. ...++...+. +.|+++.+|.. ..+.+|+|+.. +.+||+.+++.|++++++
T Consensus 296 ~-----------~~~~~~~~~~-~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 296 E-----------LEKRFLKEAE-ERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred h-----------HhHHHHHHHH-HCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 0 2355655554 45998888764 34789999987 899999999999988764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-17 Score=164.81 Aligned_cols=345 Identities=13% Similarity=0.130 Sum_probs=217.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|. ..+.. ++.+.+++.+++.+... + ...-..+.+..+++.+.+... ...+.+++++++++|.+
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~-~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve 155 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL-H-SQELLDPLRAMLAKTLAALTP--GKLKYSFFCNSGTESVE 155 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc-c-ccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCchHHHH
Confidence 677899998884 44444 78899999999875321 1 111224566667777765433 12368999999999999
Q ss_pred HHHHHhc----CCC-CeEEEcCCCCCChHHHHHH-cCCEEEE---ecCcCCCC--CccCHHhHhhhcc------CCceEE
Q 012124 169 QAVLAVC----SPG-DEVIIPAPFWVSYPEMARI-ADATPVI---LPTRISEN--FLLDPKVLESKLT------EKSRLL 231 (470)
Q Consensus 169 ~~~~~l~----~~g-d~Vlv~~p~y~~~~~~~~~-~g~~~~~---v~~~~~~~--~~~d~~~l~~~l~------~~~~~i 231 (470)
.+++... ++| ..|+...-+|++....... .|-.... .|..+.-. .-.|.+.+++.++ +++.+|
T Consensus 156 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAav 235 (459)
T PRK11522 156 AALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAV 235 (459)
T ss_pred HHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEE
Confidence 9988642 123 4688888899987654332 2211111 11110000 0026777777774 245566
Q ss_pred EEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ce
Q 012124 232 ILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WR 309 (470)
Q Consensus 232 ~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r 309 (470)
++...+.-.|. ..|++.++++.++|++| |+++|.||++..|...+.. .....+.-..| +-+|+|.+| .| ++
T Consensus 236 IvEpv~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~-~a~e~~gv~PD----ivt~gK~lg-gG~~P 308 (459)
T PRK11522 236 ILEPIQGEGGVILPPEGYLTAVRKLCDEF-GALLILDEVQTGMGRTGKM-FACEHENVQPD----ILCLAKALG-GGVMP 308 (459)
T ss_pred EEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEeccceecCCccchh-hhhhccCCCCC----EEEechhhh-CCCcc
Confidence 66555666677 45788999999999999 9999999999875322221 11111111112 337899998 88 69
Q ss_pred eeEEEcCHHHHHHHHH--HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCCeec
Q 012124 310 LGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMS 383 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~ 383 (470)
+|.+++.+++.+.+.. .....+++.+++...++.+.|+.-.. + .+.++.+++-+++.+.|++ +|++-..
T Consensus 309 igav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~-~----~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~ 383 (459)
T PRK11522 309 IGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE-Q----NLPAQAEQKGDYLLDGFRQLAREYPDLVQE 383 (459)
T ss_pred ceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHHHHHHhCCCceee
Confidence 9999999988876642 22345666789888888888774211 2 2334444455555555544 3322111
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
....|.++.+.+.+.- ....+++.|+++ ||.+.+.. ...+.+|+..+. +++++++++++|.+++
T Consensus 384 VrG~Gl~~giel~~~~-----------~~~~i~~~l~~~-Gvl~~~~~--~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l 449 (459)
T PRK11522 384 ARGKGMLMAIEFVDNE-----------IGYNFASEMFRQ-RVLVAGTL--NNAKTIRIEPPLTLTIEQCEQVLKAARKAL 449 (459)
T ss_pred EEeceeEEEEEecCch-----------HHHHHHHHHHHC-CeEEEecC--CCCCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 1134666777775420 345677877765 99987642 124689988765 9999999999999999
Q ss_pred HhhCC
Q 012124 462 LTLRP 466 (470)
Q Consensus 462 ~~~~~ 466 (470)
+++..
T Consensus 450 ~~~~~ 454 (459)
T PRK11522 450 AAMRV 454 (459)
T ss_pred HHHHH
Confidence 87653
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-17 Score=164.08 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~ 208 (470)
..+|.+.++++. | .+..++++++++|+.+++.++++|||+|+++.++|.+... .+...|++++.++.
T Consensus 65 ~~~le~~lA~l~----g----~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 135 (427)
T PRK05994 65 NAVLEERVAALE----G----GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA- 135 (427)
T ss_pred HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC-
Confidence 456677777664 3 2357888999999999999999999999999999987543 35678999998875
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|++.+++++++++++|++++|+||||.+++ +++|+++|+++ ++++|+|+++..... ..++ +
T Consensus 136 ------~d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~a~a~~~~----~~pl---~- 197 (427)
T PRK05994 136 ------DDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRA-GLPLIVDNTLASPYL----IRPI---E- 197 (427)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCcccccc----CCcc---c-
Confidence 2789999999989999999999999999999 88999999999 999999999974211 1111 1
Q ss_pred CCCceEEEeccCcccccccceeeEEEc
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
.+-.+++.|++|.++-+|-.+|.++.
T Consensus 198 -~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 198 -HGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred -cCCcEEEEcCccccCCCCCcEEEEEE
Confidence 24459999999999755655665444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=165.11 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 208 (470)
..+|++.++++. | .+..++|+++++|+.+++.+++++||+|++....|.+....+ ...|++++.++.+
T Consensus 66 ~~~le~~lA~l~----g----~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~ 137 (433)
T PRK08134 66 VAVLEERVAALE----G----GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG 137 (433)
T ss_pred HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC
Confidence 466777777765 3 234788999999999999999999999999999998765544 4589999998862
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
|++.+++++++++|+|++.+++||||.+.+ +++|+++|+++ |+++|+|.++..-.. ..++ .
T Consensus 138 -------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~-gi~livD~t~a~~~~----~~pl-~--- 198 (433)
T PRK08134 138 -------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEA-GVPLLVDSTFTTPYL----LRPF-E--- 198 (433)
T ss_pred -------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHc-CCEEEEECCCccccc----CCch-h---
Confidence 789999999999999999999999999999 88999999999 999999999864211 1122 1
Q ss_pred CCCceEEEeccCcccccccceeeEEEc
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
.+-.+++.|.+|.++-+|-.+|.++.
T Consensus 199 -~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 199 -HGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred -cCCCEEEeccccccCCCCCceEEEEE
Confidence 34559999999999756765666544
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-16 Score=152.22 Aligned_cols=309 Identities=19% Similarity=0.275 Sum_probs=206.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
-....+++.+.+..++...++ -..++.+++++|+ ...+.+.+++++.||.+++++| +.|||+|+++.-+
T Consensus 14 ~~~e~~~v~~vl~sg~i~~G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~T 83 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTGGP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFT 83 (374)
T ss_pred chHHHHHHHHHHHcCCeecCh--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCc
Confidence 467788888998887665533 5578999999986 4468899999999999999966 6999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|....+.+...|++++.++++++ .+.+|++.+|++|++++|+|+..+- -|...+ +++|.++|++| |++||||
T Consensus 84 fvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~~tKAIipVhl---~G~~~d---m~~i~~la~~~-~l~vIED 155 (374)
T COG0399 84 FVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITPRTKAIIPVHL---AGQPCD---MDAIMALAKRH-GLPVIED 155 (374)
T ss_pred hHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHcccCCeEEEEehh---ccCCCC---HHHHHHHHHHc-CCeEEEE
Confidence 99999999999999999999875 4679999999999999999985433 455556 88899999999 9999999
Q ss_pred ccccccc-cCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhhcc------------
Q 012124 268 EIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFT------------ 331 (470)
Q Consensus 268 d~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~------------ 331 (470)
.+++... |.+. .+.++.. +-+.|| .|.+. .| --|.++. ++++.++++.++....
T Consensus 156 aAqa~Ga~y~gk---~vGt~Gd-----~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~ 225 (374)
T COG0399 156 AAQAHGATYKGK---KVGSFGD-----IGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEE 225 (374)
T ss_pred cchhccCeecCc---ccccccc-----eEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeee
Confidence 9988532 3332 2222322 445566 59987 55 4577776 4567777765544322
Q ss_pred --CC--CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-Cc---eEEEe-eeccCccCCc
Q 012124 332 --SG--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QG---AFYLF-IDFSTYYGSE 402 (470)
Q Consensus 332 --~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~---g~~~~-~~~~~~~~~~ 402 (470)
++ .+.+.++....-|+ .+++..++-++..+...+.|++++++.+... .+ .++++ +.+++.
T Consensus 226 ~G~N~rm~~iqAAigl~QL~-------~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~---- 294 (374)
T COG0399 226 LGYNYRLTEIQAAIGLAQLE-------RLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE---- 294 (374)
T ss_pred cccccCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC----
Confidence 11 22222222223333 2333333444455556667776655443322 22 23322 334331
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCE----EEECCCCC--------C----C-------CCcEEEEeec--CHHHHHHHHHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQV----ALVPGDAF--------G----D-------DTCIRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI----~v~pg~~f--------~----~-------~~~iRls~~~--~~~~i~~~l~~l 457 (470)
..+-+.+.+.|.++ || ...|.... . . ...+.|-+.. +++++++.++.|
T Consensus 295 ------~~~R~~l~~~L~~~-gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l 367 (374)
T COG0399 295 ------GISRDALMESLKEA-GVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEAL 367 (374)
T ss_pred ------CCCHHHHHHHHHhC-CCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHH
Confidence 01456777777655 44 44442221 0 0 1246666554 889999999999
Q ss_pred HHHHHh
Q 012124 458 KKGLLT 463 (470)
Q Consensus 458 ~~~l~~ 463 (470)
++++.+
T Consensus 368 ~~~~~~ 373 (374)
T COG0399 368 KEVLGS 373 (374)
T ss_pred HHHhcc
Confidence 988753
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=157.66 Aligned_cols=202 Identities=18% Similarity=0.224 Sum_probs=158.5
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHc----CCCC-CC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIRE----GFTR-YT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~-y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+.+.+.|..+.-. +.++.+.+++.+.... .... |+ ...+.++-|+.+|++++ +++.+|++|+|+|+
T Consensus 41 ~~~~vyld~~at~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFts~ATE 113 (428)
T KOG1549|consen 41 GTRPVYLDNQATG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFTSGATE 113 (428)
T ss_pred CCccEEEecCcCC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEeCCchH
Confidence 3455666666543 3467777777776654 2222 32 23446788999999875 57778999999999
Q ss_pred HHHHHHHHhc-CCCC----eEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 166 SILQAVLAVC-SPGD----EVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 166 al~~~~~~l~-~~gd----~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
+++++++.+. ..+| .|++.+-.|++... .++..|+++..+|+. +...+|++.+++.++++|+++.+...+
T Consensus 114 s~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~I~~Vn 191 (428)
T KOG1549|consen 114 SNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVSIMHVN 191 (428)
T ss_pred HHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEEEEecc
Confidence 9999999873 4566 89988888887664 456789999999997 344589999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|.+|+.+| +++|.++|+++ ++.++.|.+++- |.-...+..+.. .++..|.+|.+|.+| +|++++.+
T Consensus 192 n~~gv~~P---v~EI~~icr~~-~v~v~~DaAQav----G~i~vDV~eln~----D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 192 NEIGVLQP---VKEIVKICREE-GVQVHVDAAQAV----GKIPVDVQELNA----DFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred cCcccccc---HHHHHHHhCcC-CcEEEeehhhhc----CCccccHHHcCc----hheeeecccccCCCc--ceEEEEcc
Confidence 99999999 99999999999 999999999986 444555665543 378888999999888 89999875
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-17 Score=158.77 Aligned_cols=348 Identities=14% Similarity=0.140 Sum_probs=225.3
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCC---CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.+|||..|. ..+.. +|.+.+++.+++..-. ..|.. .+-...+++.|......+ ..+.+++++++++
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~----~e~~v~~ae~L~~~~p~~-~~~~~~f~~sGae 128 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLY----YEPYVELAEKLTALAPGS-GLKKVFFGNSGAE 128 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCccc----chhHHHHHHHHHHhCCcc-cCCeEEecCCcHH
Confidence 678899999965 44444 8999999999887522 22322 255666666666543322 4568999999999
Q ss_pred HHHHHHHHhc--CCCCeEEEcCCCCCChHHHH-HHcC-------------CEEEEecCcC--CCCCcc--------CHHh
Q 012124 166 SILQAVLAVC--SPGDEVIIPAPFWVSYPEMA-RIAD-------------ATPVILPTRI--SENFLL--------DPKV 219 (470)
Q Consensus 166 al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~-~~~g-------------~~~~~v~~~~--~~~~~~--------d~~~ 219 (470)
|.+.+++... ..+..|+...-+|++..... ...| ..++.+|... .+.+.. ..+.
T Consensus 129 A~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~ 208 (447)
T COG0160 129 AVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEY 208 (447)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHH
Confidence 9999998742 23467888888888765432 1111 2244555432 111111 2334
Q ss_pred Hhhhcc------CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc
Q 012124 220 LESKLT------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 292 (470)
Q Consensus 220 l~~~l~------~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (470)
+++.+. .++.++++...+.-.|. +.|++.++++.++|++| |+++|.||++..+...| .++.+.. .+-
T Consensus 209 ~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~-gillI~DEVQtG~GRTG----~~fa~E~-~gv 282 (447)
T COG0160 209 IERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH-GILLIADEVQTGFGRTG----KMFAFEH-FGV 282 (447)
T ss_pred HHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccc----cchhhhh-cCC
Confidence 555442 24667777777887886 67888999999999999 99999999999976554 3333322 122
Q ss_pred eEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
.--|-++||.+| .|+++|.+++.+++.+ ...-....+++.|+++..++.+.|+.- + -+.+.++.++.-+++.+
T Consensus 283 ~PDivt~aK~ig-~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vi---e--~e~L~~~a~~~G~~l~~ 355 (447)
T COG0160 283 EPDIVTLAKSLG-GGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDVI---E--EENLLERAAELGEYLRD 355 (447)
T ss_pred CCCEEEeccccc-CCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHHH---H--HccHHHHHHHHHHHHHH
Confidence 222556899998 7999999999999988 544445566889999999999888731 1 11334444444444444
Q ss_pred Hhcc----CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 373 SFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 373 ~L~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
.|.+ .| +--....-|+++.+++-+....... ..+....++.+++++ |+.+..+..+ .+.|||.... +
T Consensus 356 ~L~~l~~~~~-~IgdVRG~Glm~giE~v~d~~t~~p---~~~~~~~i~~~~~~~-Glil~~~G~~--~nviRi~PPL~is 428 (447)
T COG0160 356 RLEELQEKHP-LIGDVRGLGLMIGVELVKDRDTKEP---DAELAAKIVARAFER-GLLLLTCGPH--GNVLRILPPLTIS 428 (447)
T ss_pred HHHHHHhhcC-ceecccccceEEEEEEecCCCCCCC---CHHHHHHHHHHHHHc-CCEEeccCCC--CcEEEEeCCcccC
Confidence 4443 32 1111123367788777542100000 001346777777766 8877765433 4789998765 9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012124 447 LTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~ 464 (470)
+++++++++.|+++++++
T Consensus 429 ~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 429 DEELDEGLDILEEALKEA 446 (447)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-17 Score=162.31 Aligned_cols=340 Identities=16% Similarity=0.129 Sum_probs=209.7
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.-. +.. ++.+.+++.+++.+......+ .+....+++.+.+..+ .+.+.+++++++|..
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~----~~~~~~lAe~l~~~~~----~~~v~F~nSGtEA~e 144 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLP----SEDAAWVGEELARRFG----LPYWQVATTATDANR 144 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHHhC----CCEEEEECCHHHHHH
Confidence 67889999877633 333 789999999999875322212 3555666666665432 478999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHH-H-cCCE-----------------EEEecCcCCCCCccCHHhHhhhcc-C
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMAR-I-ADAT-----------------PVILPTRISENFLLDPKVLESKLT-E 226 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~-~g~~-----------------~~~v~~~~~~~~~~d~~~l~~~l~-~ 226 (470)
.+++... ...++|+...-+|+++.+... . .+.+ +..+| | -|++.+++.+. +
T Consensus 145 ~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~-nd~~~l~~~l~~~ 217 (453)
T PRK07046 145 FVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------F-NDLAALEAALADG 217 (453)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------C-CCHHHHHHHhCCC
Confidence 9888642 223678888889999753221 1 1100 11111 1 17899998885 3
Q ss_pred CceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
++.+|++...+...| ...+.+.++++.++|++| |+++|.||+.. |..+-........+.++ +-+|+|.+|
T Consensus 218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~-g~llI~DEV~t-fr~g~Gg~~~~~gv~PD------i~t~gK~lg- 288 (453)
T PRK07046 218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRY-GTLLVIDETHT-ISSGPGGYTRAHGLEPD------FLVVGKPIA- 288 (453)
T ss_pred CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEcccc-CccCCcchhHHhCCCcc------ceeehhhhc-
Confidence 566666644444345 456778999999999999 99999999987 44322111111222221 346899998
Q ss_pred ccceeeEEEcCHHHHHHHHHH---------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 306 TGWRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
.|+++|.+++++++.+.+... ....+++.+++...++.+.|+.-.. ++.+++..+.-+..++.|.+.+.+
T Consensus 289 gG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~ 367 (453)
T PRK07046 289 GGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAYAHMLALAARLAAGLRAVIAR 367 (453)
T ss_pred CCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887532 1223667899998888888763211 233444433333334444444444
Q ss_pred CCCC--eecCCCceEEEeeeccC-ccCCcccCCC--CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHH
Q 012124 377 LEGV--KMSEPQGAFYLFIDFST-YYGSEAEGFG--KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQ 451 (470)
Q Consensus 377 ~~g~--~~~~~~~g~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~ 451 (470)
. ++ .+.. .+.+ +.+.+.+ .......... ...-...++..++++ ||.+.|. .+.++++...++++|+
T Consensus 368 ~-~~~~~v~g-~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gv~~~~~-----~~~~~~~p~~t~~did 438 (453)
T PRK07046 368 H-GLPWHVTR-VGAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNR-GVLITPF-----HNMMLVCPATTAADVD 438 (453)
T ss_pred C-CCCeEEEE-eCcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHC-CCEEecc-----cCcEEEeCCCCHHHHH
Confidence 4 32 2322 2222 3333311 1000000000 000123456666665 9998773 2467888888999999
Q ss_pred HHHHHHHHHHHhhC
Q 012124 452 AAVERIKKGLLTLR 465 (470)
Q Consensus 452 ~~l~~l~~~l~~~~ 465 (470)
++++++.++++++.
T Consensus 439 ~~~~~~~~~l~~~~ 452 (453)
T PRK07046 439 RLVAAFDACLGELL 452 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-17 Score=163.36 Aligned_cols=340 Identities=12% Similarity=0.137 Sum_probs=209.3
Q ss_pred hcCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 91 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.+|+.+||+..|... +.. ++.+.+++.+++.+... +.. ..++...+++.+.+..+ ..+.+.+++++++|.
T Consensus 96 ~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~-~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~ 168 (474)
T PLN02482 96 VDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTS-FGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEAC 168 (474)
T ss_pred CCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCC-CCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHHH
Confidence 368889999888643 333 78999999999986442 322 23566677777765433 247999999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHH-c--CC-----------------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 168 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-A--DA-----------------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 168 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~--g~-----------------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
+.+++... ...++|+...-+|+++...+.. . |. .++.+|. -|++.+++.+.
T Consensus 169 e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------nd~~~l~~~l~ 241 (474)
T PLN02482 169 MGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-------NDLEAVKKLFE 241 (474)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-------CChHHHHHHHH
Confidence 99888643 1236788888899997643211 0 10 0111111 17888888874
Q ss_pred ---CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 226 ---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 ---~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+++.+|++...+...|... +++.+++|.++|++| |+++|.||++..|..+.........+.+ | +.+|+|
T Consensus 242 ~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~-g~lLI~DEV~tGfR~g~~ga~~~~gv~P--D----i~t~gK 314 (474)
T PLN02482 242 ANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKEN-GALLVFDEVMTGFRIAYGGAQEYFGITP--D----LTTLGK 314 (474)
T ss_pred hCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCeecCcchHhHHhCCCC--C----EEEecc
Confidence 3455666655566677655 578999999999999 9999999999877433211111112222 2 457899
Q ss_pred ccccccceeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
.+| .|+++|.+++++++++.+... ....+++.+++...++.+.|+.-.. + ...++.+++-+.+.+.|+++
T Consensus 315 ~lg-gG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~-~----~~~~~~~~~g~~l~~~L~~l~ 388 (474)
T PLN02482 315 VIG-GGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ-P----GTYEYLDKITKKLIQGILEAG 388 (474)
T ss_pred hhh-CCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc-c----CHHHHHHHHHHHHHHHHHHHH
Confidence 998 899999999999999887531 2234556788888888777764211 2 23334444444444444432
Q ss_pred --CCCeec-CCCceEEEeeeccC-ccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHH
Q 012124 378 --EGVKMS-EPQGAFYLFIDFST-YYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQA 452 (470)
Q Consensus 378 --~g~~~~-~~~~g~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~ 452 (470)
-|+.+. ...++++ .+.+.. .... ......+......+.+.|+++ ||.+.|... +.+ -+++..++++|++
T Consensus 389 ~~~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~~~~~~~---~~~-~psl~ht~~dId~ 462 (474)
T PLN02482 389 KKAGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGMLEE-GVYLAPSQF---EAG-FTSLAHTEEDIDF 462 (474)
T ss_pred HhcCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHHHHC-CeEEeccCC---CCC-cCCCCCCHHHHHH
Confidence 033332 2334443 222211 0000 000000000134677777765 999987321 111 1677779999999
Q ss_pred HHHHHHHHHHh
Q 012124 453 AVERIKKGLLT 463 (470)
Q Consensus 453 ~l~~l~~~l~~ 463 (470)
+++++++++++
T Consensus 463 ~l~al~~~l~~ 473 (474)
T PLN02482 463 TIAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=160.57 Aligned_cols=320 Identities=13% Similarity=0.087 Sum_probs=211.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|. ..+.. ++.+.+++.+++.+..+ +.+ .-..+.+..+++.+.+..+ .+.+++++++++|++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~SGseA~e 95 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVV-AGP-MFEHEEKEEMLEELSKWVN----YEYVYMGNSGTEAVE 95 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCC-ccC-CcCCHHHHHHHHHHHhhcC----CCEEEEeCchHHHHH
Confidence 577889998875 33333 68888999999876321 111 1123445555666654333 358999999999999
Q ss_pred HHHHHhc-CCC-CeEEEcCCCCCChHHHHHHc--------CCE-----EEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 169 QAVLAVC-SPG-DEVIIPAPFWVSYPEMARIA--------DAT-----PVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 169 ~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~--------g~~-----~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
.+++... .+| ++|+..+.+|++....+... +.. +..+|. .|++.+++.+.+++++|++
T Consensus 96 ~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~~~aAviv 168 (364)
T PRK04013 96 AALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-------NDVEAAKEAITKETAAVIF 168 (364)
T ss_pred HHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-------CCHHHHHHHhcCCcEEEEE
Confidence 9998753 345 89999999999876443321 111 111221 2678899988888888888
Q ss_pred cCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 234 CSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 234 ~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
...+...|. ..+++.+++|.++|++| |+++|+||++..+..+.........+.++ +-+|+|.++ .|+++|.
T Consensus 169 Epi~g~gG~~~~~~~yl~~lr~lc~~~-gillI~DEv~tG~RtG~~~a~~~~gv~PD------iv~~gK~lg-gG~P~~a 240 (364)
T PRK04013 169 EPIQGEGGIVPAKEEFVKTLRDLTEDV-GALLIADEVQSGLRTGKFLAIEHYKVEPD------IVTMGKGIG-NGVPVSL 240 (364)
T ss_pred cCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCCCchhHHHhcCCCCC------EEEeccccc-CCceeEE
Confidence 766665665 55788999999999999 99999999999873321111112233332 455799998 8999999
Q ss_pred EEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 313 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
++.+.++. ......+++.++++..++.+.|+.-.. ++.+++.++. + ..+.. +-+.- ...-|+++-
T Consensus 241 ~~~~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~-------l-~~l~~-~~v~~-vRG~Gl~~g 305 (364)
T PRK04013 241 TLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGEK-------F-IEIKG-ERVVT-TRGRGLMIG 305 (364)
T ss_pred EEeccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------H-HHhcc-Cccee-eeeCcEEEE
Confidence 99877652 223446778899999888888764211 2223333322 2 12221 21111 123367777
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++.+ +...+.+.++++ |+.+.+.. .+.+|+.... +++++++++++|+++++++.
T Consensus 306 ve~~~-------------~~~~i~~~~~~~-Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 306 IVLKK-------------PVGKYVEELQNR-GYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred EEeCC-------------cHHHHHHHHHhC-CcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHHh
Confidence 78753 345677777765 89887632 3679998775 99999999999999998754
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=161.31 Aligned_cols=356 Identities=12% Similarity=0.036 Sum_probs=213.8
Q ss_pred cCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.... .. ++.+.+++.+++.+.........-..+.+..+++.+.+..+ ...+.+++++++++|++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGSEAve 125 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAP--AGMSKVYYGLSGSDANE 125 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHH
Confidence 677899999886433 32 78999999999876321110011224666777777765432 23468999999999999
Q ss_pred HHHHHhc------C-C-CCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCC-----------ccC
Q 012124 169 QAVLAVC------S-P-GDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENF-----------LLD 216 (470)
Q Consensus 169 ~~~~~l~------~-~-gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~-----------~~d 216 (470)
.+++... . + ..+|+...-+|++.......... .+..++....... .-+
T Consensus 126 ~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 205 (461)
T PRK07482 126 TQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYC 205 (461)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHH
Confidence 9998753 1 2 25788888999986543222111 1112221110000 013
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 290 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~ 290 (470)
++.+++.+. +++.+|++...+.-.|.. .+++.+++|.++|++| |+++|.||++..|...+... .....+.++
T Consensus 206 ~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~~a~~~~gv~PD- 283 (461)
T PRK07482 206 ADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKY-DILLIADEVVTGFGRLGSMFGSDHYGIEPD- 283 (461)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCcchhhHHhcCCCCC-
Confidence 567777773 346667765556556765 6788999999999999 99999999999873333211 111122222
Q ss_pred CceEEEeccCcccccccc-eeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
+-+++|.++ .|+ ++|.+++.+++.+.+... ....+++.++++..++.+.|+.-.. ++.+++.++.
T Consensus 284 -----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~-~~l~~~~~~~ 356 (461)
T PRK07482 284 -----LITVAKGLT-SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILER-ENLVGNAAEV 356 (461)
T ss_pred -----EEEEccccc-cCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence 344789998 885 999999999988777521 2335677899999888888764111 2223333222
Q ss_pred HHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCC-CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 363 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI-ENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
=...++.+.+.+.+.+-+ .....-|+++.+++.+.... ...+... .....++..++++ ||.+.++. ..+.+|+
T Consensus 357 g~~l~~~L~~l~~~~~~v-~~vrG~Glm~giel~~~~~~-~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~~---~~~~i~~ 430 (461)
T PRK07482 357 GAYFRARLRAAFGDHPLV-GEVRGVGMLAAVEFVADRDD-RTPFDPALKIGPQVSAAALER-GVIARAMP---HGDILGF 430 (461)
T ss_pred HHHHHHHHHHHHhcCCCE-EEEeeceeEEEEEeccCCCc-CCCCChhhHHHHHHHHHHHHC-CcEEecCC---CCCEEEE
Confidence 222233333333334322 22224466666777431000 0000000 0124577777765 89886531 1357888
Q ss_pred Eee--cCHHHHHHHHHHHHHHHHhh
Q 012124 442 SYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 442 s~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
... .+++++++++++|+++++++
T Consensus 431 ~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 431 APPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 744 49999999999999998765
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-17 Score=145.34 Aligned_cols=330 Identities=18% Similarity=0.241 Sum_probs=228.3
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
.+||.+..-.. |..++++++.++.. +..-|+.......|.+.+|+... ...-+++++|++..+..+...+-
T Consensus 23 ~vDLRSDTvT~-PTdeMr~am~eA~v-gDdVyGeD~tt~rLE~~vA~l~G-------KEAgLFv~SGTmgNllaIm~Hc~ 93 (384)
T KOG1368|consen 23 SVDLRSDTVTV-PTDEMRRAMAEASV-GDDVYGEDPTTNRLEQRVAELFG-------KEAGLFVPSGTMGNLLAIMVHCH 93 (384)
T ss_pred ccccccccccC-ChHHHHHHHhhccc-CcccccCCccHHHHHHHHHHHhC-------ccceeeecccccccHHHHHHHhc
Confidence 36666655443 34678888877654 34557777777889999888864 33468888888887776666666
Q ss_pred CCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--------CceEEEEcCCCCCcc-cC
Q 012124 176 SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE--------KSRLLILCSPSNPTG-SV 243 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--------~~~~i~l~~p~nPtG-~~ 243 (470)
++|.+|++.+-++...+. +....|+.+.++... ++..+|++++++++.. .+++|++.+.||-+| .+
T Consensus 94 ~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~v 171 (384)
T KOG1368|consen 94 QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKV 171 (384)
T ss_pred CCCceEEeccchheeehhccChhhhccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceE
Confidence 799999999988764442 456678887777764 4445999999999962 588999977765555 99
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE-EEcCHHHHHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAA 322 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~-~~~~~~~~~~ 322 (470)
+|.|++.++.+||++| ++.+..|.+--.-.- -....++..+....+.|=. .|||.+|. ++|- ++++.+++++
T Consensus 172 lPle~~~~v~~lak~~-glkLH~DGARi~NAa-vasgV~vk~i~~~fDSVsi--CLSKglgA---PVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 172 LPLEELDRVKALAKRH-GLKLHMDGARIFNAA-VASGVPVKKICSAFDSVSI--CLSKGLGA---PVGSVIVGSKDFIDK 244 (384)
T ss_pred eeHHHHHHHHHHHhcc-CCeeecchhhhhhHH-HHcCCCHHHHHHhhhhhhh--hhhccCCC---CcccEEEccHHHHHH
Confidence 9999999999999999 999999987321000 0111333333322233322 38899873 3565 5689999999
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC--CceEEEeeeccCccC
Q 012124 323 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~~g~~~~~~~~~~~~ 400 (470)
.+..+.....+.-..+..++++.... ++-...++ .-.++...+.+.++..+++++..| +.++ +.+.+-..
T Consensus 245 A~~~RKalGGGmRQsGvLaaaaLval----~~~~~~L~-~dHk~A~~lAe~~~~~~~i~v~v~a~etNi-v~~~l~q~-- 316 (384)
T KOG1368|consen 245 ARHFRKALGGGMRQSGVLAAAALVAL----DENVPLLR-ADHKRAKELAEYINTPEEIRVEVPAVETNI-VNMVLCQA-- 316 (384)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHh----hcchHHHH-HHHHHHHHHHHHhccccceeeecchhhcce-eeeecccc--
Confidence 99888888888877777777766653 22233333 234566667777777756766544 4454 45444221
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHH-HHHHHhh
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI-KKGLLTL 464 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l-~~~l~~~ 464 (470)
..+.++++..+. ++||.+.+|..+ .+|+.+.+ ++++++..+..+ +.++.++
T Consensus 317 --------~~~~~~l~~~~~-k~gi~lm~~~s~----r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 317 --------RLTAEELCKFLE-KNGILLMGGASR----RIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred --------cCCHHHHHHHHH-HCCeEEeecccc----ceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 027889998875 569999997654 59999997 899999999999 5555543
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-17 Score=162.12 Aligned_cols=213 Identities=11% Similarity=0.098 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~ 209 (470)
..|.+.++++. | .+..+++++++.|+..++.+++++||+|++....|.+.... +...|++++.++ +.
T Consensus 72 ~~Le~~lA~l~----g----~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~ 142 (436)
T PRK07812 72 DVVEQRIAALE----G----GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP 142 (436)
T ss_pred HHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC
Confidence 45566666553 4 24578888888899999999999999999999888876643 344788877775 21
Q ss_pred CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
.|++.+++++++++++|++.+|+||+|.+.+ +++|.++|+++ |+++|+|+++..-.. ..++ .
T Consensus 143 -----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~-gi~liVD~t~a~~~~----~~pl---~-- 204 (436)
T PRK07812 143 -----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEA-GVPLIVDNTIATPYL----IRPL---E-- 204 (436)
T ss_pred -----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCccccc----CCch---h--
Confidence 3899999999999999999999999999999 88899999999 999999998864111 1111 1
Q ss_pred CCceEEEeccCcccccccceeeEEEcCHH-------------------------------HH-HHHHHHhhhccCCCChH
Q 012124 290 WERTLTVNGFSKAFAMTGWRLGYIAGPKH-------------------------------FV-AACNKIQSQFTSGASSI 337 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-------------------------------~~-~~l~~~~~~~~~~~~~~ 337 (470)
.+-.+++.|++|.+|..|--+|.++.... ++ +...........+.+++
T Consensus 205 ~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~ 284 (436)
T PRK07812 205 HGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPF 284 (436)
T ss_pred cCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHH
Confidence 24458889999999756655666655311 01 11112223344555665
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 338 SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 338 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
....+..-| +-+..+.++..++...+.+.|++.|++
T Consensus 285 ~a~l~~rgl-------~tL~~R~~~~~~nA~~la~~L~~~p~v 320 (436)
T PRK07812 285 NAFLIAQGL-------ETLSLRIERHVANAQRVAEFLEARDEV 320 (436)
T ss_pred HHHHHhcCc-------CcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 433322222 224445555567777788888877665
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=146.85 Aligned_cols=373 Identities=16% Similarity=0.132 Sum_probs=233.9
Q ss_pred ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCC-CCCCChHHHHHHHHH
Q 012124 40 NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE-PDFDTPVLIAEAGIN 118 (470)
Q Consensus 40 Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~-~~~~~~~~~~~a~~~ 118 (470)
|+.+-.-++=++...| .|||=+.+.-.+.....++-. -..+++++|+.++ ..+..+|++.++-.+
T Consensus 27 ~q~r~~l~~~legi~g-agtwk~erVi~s~q~p~i~v~-------------G~~k~ilnFcaNnYLGLsshPeii~a~~~ 92 (417)
T KOG1359|consen 27 AQLRAILGDELEGIKG-AGTWKRERVITSRQGPTIQVK-------------GSDKKILNFCANNYLGLSSHPEIINAGQK 92 (417)
T ss_pred HHHHHhccCccceecc-cccceeeeEEeecccceEEEe-------------ccccceeeecccccccccCChHHHHHHHH
Confidence 4444444555677778 899876543222222111100 1223678888776 556668999999999
Q ss_pred HHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH
Q 012124 119 AIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA 195 (470)
Q Consensus 119 ~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~ 195 (470)
++.+. ...-.-..|+....+.+...+.+..+ .|+.++.+..-.|...++.+++.|.|.|+-+.-.+.+..+-+
T Consensus 93 aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~----rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGi 168 (417)
T KOG1359|consen 93 ALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHG----REDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGI 168 (417)
T ss_pred HHHHhCCCccceeEEecchHHHHHHHHHHHHHhC----CCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhh
Confidence 98762 11111234555555555555544333 345556666666777788888999999999988888888877
Q ss_pred HHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc
Q 012124 196 RIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271 (470)
Q Consensus 196 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~ 271 (470)
+.+. + + . .+|+-.++..+. .+-|+|+....-...|...| +++|.+++++| |+++++||+++
T Consensus 169 rLck-r---y-----~--h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP---l~ei~~La~kY-gaLlfiDecHa 233 (417)
T KOG1359|consen 169 RLCK-R---Y-----R--HVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP---LEEISQLAKKY-GALLFIDECHA 233 (417)
T ss_pred HHHh-h---h-----c--cchhHHHHHHHHHhhhheEEEEEecceeccCCCccc---HHHHHHHHHhc-CcEEEEeeccc
Confidence 7765 1 1 1 156666655443 34555555555778999999 88889999999 99999999999
Q ss_pred ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChH--HHHHHHHHHhcC
Q 012124 272 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI--SQKAGVAALGLG 349 (470)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~--~q~a~~~~l~~~ 349 (470)
.+.++..+...-..+..+.+..|..++++|.+| |.--||..+|++++.-++...+++-++.+-+ ..-.+.++++.
T Consensus 234 Tgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dl- 310 (417)
T KOG1359|consen 234 TGFFGETGRGTAEEFGVMGDVDIINSTLGKALG--GASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL- 310 (417)
T ss_pred ceeecCCCCChHHHhCCCCcceehhhhhhhhhc--CCCCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHH-
Confidence 887775544444444444577789999999985 3344999999999999987766554433221 22222222221
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 350 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
--.-.......+.+.+++.+..+.- |+++......+ .-+-+.+. ..+..+++.|+++ ||.|..
T Consensus 311 ---lm~s~~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI-~pv~lGda-----------~lA~~~ad~lLk~-Gi~Vig 373 (417)
T KOG1359|consen 311 ---LMVSSKEIQSRQANTQRFREFMEAA-GFTISGASHPI-CPVMLGDA-----------RLASKMADELLKR-GIYVIG 373 (417)
T ss_pred ---HHhhHHHHHHHHHHHHHHHHHHHhc-CceecCCCCCc-cceecccH-----------HHHHHHHHHHHhc-CceEEe
Confidence 1111223333344555555555443 88776533222 22233322 1567888899987 898865
Q ss_pred CCCCC-CC--CcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 430 GDAFG-DD--TCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 430 g~~f~-~~--~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
-++.- ++ ..+|+.++. ++++|++.++++.++.+.+.
T Consensus 374 fs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 374 FSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 (417)
T ss_pred ecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence 33222 22 367777765 99999999999999877543
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=160.60 Aligned_cols=316 Identities=12% Similarity=0.037 Sum_probs=203.7
Q ss_pred ChHH-HHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEec-ChHHHHHHHHHHhcCC-CCeEEEc
Q 012124 108 TPVL-IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSILQAVLAVCSP-GDEVIIP 184 (470)
Q Consensus 108 ~~~~-~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~-g~~~al~~~~~~l~~~-gd~Vlv~ 184 (470)
+++. +++++.+...... +.++ -..++-+.+.+.+.+.+|.+ ++++|++++ +++.+++.++..++++ ++.|++
T Consensus 23 ~~~~~v~~a~~~~~~~~~-hr~~--~f~~~~~~~r~~l~~l~~~~-~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~- 97 (378)
T PRK03080 23 KRPGWQLEALADALLGRS-HRQK--PVKALLKRVIEGTRELLSLP-EGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA- 97 (378)
T ss_pred CChHHHHHHHHhhhcccC-cCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEECCchHHHHHHHHHhcCCCCcceEEE-
Confidence 4555 8888775533211 1211 23445555555555556642 445788875 8999999999999875 455554
Q ss_pred CCCCCCh-HH-HHHHcCC-EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 APFWVSY-PE-MARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ~p~y~~~-~~-~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
.-.|..- .. +.+..|. +++.++.+ .+..+|++.++. ++.|.+++.+|.||..+| +++|++ +++ |
T Consensus 98 ~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g~~~d~~~i~~-----~~~V~~~h~~t~tG~~~p---i~~I~~--~~~-g 164 (378)
T PRK03080 98 WESFGSKWATDVVKQLKLEDPRVLEAD--YGSLPDLSAVDF-----DRDVVFTWNGTTTGVRVP---VARWIG--ADR-E 164 (378)
T ss_pred eCHHHHHHHHHHHhhcCCCCceEeccC--CCCCCCHhhcCC-----CCCEEEEecCCccceecc---chhhcc--ccC-C
Confidence 3344332 22 2356788 88888875 334477776442 566888889999999999 777777 788 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh--------------
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------- 327 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-------------- 327 (470)
+++|+|.+.+.. ..+..+.. -.+++.|..|.++ +...+|+++..++.++.+....
T Consensus 165 ~~~vVDa~qs~G----~~pidv~~------iD~~~~s~~K~l~-~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~ 233 (378)
T PRK03080 165 GLTICDATSAAF----ALPLDWSK------LDVYTFSWQKVLG-GEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKG 233 (378)
T ss_pred CeEEEecccccc----cCCCCHHH------CcEEEEehhhhCC-CCCceEEEEECHHHHHhhhcccCCCCCchhheeccc
Confidence 999999998752 22233332 2488999999985 3234899999998887764311
Q ss_pred --------hhccCC-CChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecC--C--CceEEEee
Q 012124 328 --------SQFTSG-ASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLFI 393 (470)
Q Consensus 328 --------~~~~~~-~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~--~~g~~~~~ 393 (470)
...+.+ ++.....++.++|+.- .+. .++.+.++.+++.+++.+.|++++++.+.. + .++..+.+
T Consensus 234 ~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~ 311 (378)
T PRK03080 234 GKAIENSFKGQTINTPSMLTVEDYLDQLDWA--NSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTL 311 (378)
T ss_pred hHHhhhhhcCCcccCchHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEE
Confidence 011112 2333333334444431 022 367788888889999999999886665542 1 23333555
Q ss_pred eccC---ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 394 DFST---YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 394 ~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
.+|+ . ...++...|+++ ||.+..|......+.+|+|+.. ++++++.+++.|++++++++..
T Consensus 312 ~~~~~~~~------------~~~~~~~~l~~~-~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~~ 377 (378)
T PRK03080 312 DFVDAQAA------------VDAAAVAKLLRE-NGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKAA 377 (378)
T ss_pred EcCCchHH------------HHHHHHHHHHHc-CCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 6664 2 233466677766 7888776432235789999886 8999999999999999888753
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=159.24 Aligned_cols=346 Identities=15% Similarity=0.179 Sum_probs=210.6
Q ss_pred hcCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 91 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.+|+.+||+..|... +.. +|.+.+++.+++.+......+ .+....+++.+.+..+ ..+.+++++++++|.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~ 122 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTP----TELEIEFAKMLKEAIP---SLEKVRFVNSGTEAV 122 (428)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCC----CHHHHHHHHHHHHhCC---CCcEEEEeCCHHHHH
Confidence 367889999888643 333 788999999998764322212 2445666666654332 246899999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCCEEEE--------ecCc-CCCC---CccCHHhHhhhcc---CCce
Q 012124 168 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADATPVI--------LPTR-ISEN---FLLDPKVLESKLT---EKSR 229 (470)
Q Consensus 168 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~--------v~~~-~~~~---~~~d~~~l~~~l~---~~~~ 229 (470)
+.+++... .....|+...-+|++....+.. .|..... ++.. ..+- ...|++.+++.+. +++.
T Consensus 123 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~va 202 (428)
T PRK12389 123 MTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVA 202 (428)
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEE
Confidence 99988643 2236788888899987654332 2211110 0000 0000 0026788888774 3566
Q ss_pred EEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccc
Q 012124 230 LLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 230 ~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
+|++...+...|.. .+.+.+++|.++|++| |+++|.||++..|............+.+ | +-+|+|.++ .|+
T Consensus 203 avi~EPv~g~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~Rt~~~~a~~~~gv~P--D----ivt~gK~lg-gG~ 274 (428)
T PRK12389 203 AVLVEPIVGNFGIVEPKPGFLEAVNELAHEA-GALVIYDEVITAFRFMYGGAQDLLGVEP--D----LTALGKIIG-GGL 274 (428)
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCcchhhHHhCCCC--C----eeeechhhc-CCC
Confidence 66665556667764 5788999999999999 9999999999987432110011112222 2 457899998 899
Q ss_pred eeeEEEcCHHHHHHHHH---HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCC-C
Q 012124 309 RLGYIAGPKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG-V 380 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g-~ 380 (470)
++|.+++++++++.+.. .....+++.+++...++.+.|+.-.. ++ +.++.++.-+++.+.|++ .+- .
T Consensus 275 Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~-~~----l~~~~~~~g~~l~~~L~~l~~~~~~~~ 349 (428)
T PRK12389 275 PIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ-EG----VYEKLDRLGAMLEEGILEAAEKHGITI 349 (428)
T ss_pred ceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc-cc----HHHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999888742 12334667899998888888874211 22 333334444444444433 321 1
Q ss_pred eecCCCceEEEeeeccCccCCcccCCC--CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFG--KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~ 458 (470)
.+.. ..|++ .+.+............ .......+.+.|.++ ||.+.+.. .+.+.+++..+++++++++++++
T Consensus 350 ~v~r-~~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~~~~~l~~t~e~id~~~~~l~ 422 (428)
T PRK12389 350 TINR-LKGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQ-GINLAPSK----YEAWFLTTAHTEEDIEETLEAVD 422 (428)
T ss_pred EEEe-cCcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHC-CcEeecCC----CCCeeecCCCCHHHHHHHHHHHH
Confidence 2222 23342 3333211000000000 000134667777665 99998742 23456777779999999999999
Q ss_pred HHHHh
Q 012124 459 KGLLT 463 (470)
Q Consensus 459 ~~l~~ 463 (470)
+++++
T Consensus 423 ~~l~~ 427 (428)
T PRK12389 423 RAFAQ 427 (428)
T ss_pred HHHHh
Confidence 99875
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=160.44 Aligned_cols=355 Identities=15% Similarity=0.111 Sum_probs=213.6
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+... + ...-..+....+++.+.+..+ ..+.+++++++++|.+
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~-~~~~~~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e 119 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSY-F-PLTQSHEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANE 119 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCc-c-ccccCCHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHH
Confidence 67789999887532 333 78899999998875321 1 111123445566666665443 2358999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCCCC--Cc-----cC---H
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISEN--FL-----LD---P 217 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~--~~-----~d---~ 217 (470)
.+++.... +| .+|+...-+|++....+... |. .+..+|...... +. -| +
T Consensus 120 ~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T PRK07678 120 TAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECV 199 (451)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHH
Confidence 98886421 23 57888889999876543321 11 112222211000 00 01 2
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc--cccCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMW 290 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~--~~~~~~~ 290 (470)
+.+++.+. +++.+|++...+.-.|. ..+++.++++.++|++| |+++|.||++..|...+. .... ..+.++
T Consensus 200 ~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~-~~~~~~~gv~PD- 276 (451)
T PRK07678 200 KEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH-GALLISDEVICGFGRTGK-AFGFMNYGVKPD- 276 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhcCCcCch-hHHHHhcCCCCC-
Confidence 23455553 35667777555544565 46888999999999999 999999999988643332 1111 122222
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+-+|+|.++ .| +++|.+++++++.+.+.. .....+++.+++...++.+.|+.-.. +..+++.++.-
T Consensus 277 -----ivt~gK~lg-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g 349 (451)
T PRK07678 277 -----IITMAKGIT-SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN-ENLIERSAQLG 349 (451)
T ss_pred -----EEEeecccc-cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 446899998 77 699999999999887753 12346778899999988888874211 22233333333
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--CCCCcEEE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--GDDTCIRI 441 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--~~~~~iRl 441 (470)
+..++.|.+.+.+.+ +......-|+++.+.+.+....... ........++..|+++ ||.+.+.... ...+.+|+
T Consensus 350 ~~l~~~l~~~~~~~~-~v~~vrg~Gl~~~i~~~~~~~~~~~--~~~~~a~~i~~~l~~~-Gv~~~~~g~~v~~~~~~lrl 425 (451)
T PRK07678 350 ELLLEQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEP--ADNDKVASVVAACKEK-GLIIGKNGDTVAGYNNVLTL 425 (451)
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeeceEEEEEEecCCcccCc--CchHHHHHHHHHHHHC-CcEEeecCccccCCCCEEEE
Confidence 333333434444443 2111123355555666321000000 0000235677777765 9998763221 12367999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 442 SYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 442 s~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+... ++++|++++++|.+++++++
T Consensus 426 ~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (451)
T PRK07678 426 SPPLVISSEEIAFIVGTLKTALERIK 451 (451)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 8775 99999999999999998764
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-17 Score=173.85 Aligned_cols=340 Identities=14% Similarity=0.113 Sum_probs=212.8
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC----CCCCCCC----cCcHHHHHHHHHHHHHHcCCCCCCC--cEEEecChHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTPN----AGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQ 165 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~--~i~it~g~~~ 165 (470)
++.|..+.-.+.++..+.+++.+..... ...|... .-+.+.|+.+++++ |. +++ .|++|+|+++
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~l----ga--~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF----NA--PPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHh----CC--CccceEEEEeCChHH
Confidence 4667666555444556666665554321 1111111 12345556666554 53 444 5899999999
Q ss_pred HHHHHHHHh-cCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCC------CCccCH--HhHhhhc---------
Q 012124 166 SILQAVLAV-CSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISE------NFLLDP--KVLESKL--------- 224 (470)
Q Consensus 166 al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~------~~~~d~--~~l~~~l--------- 224 (470)
++++++..+ +++||+|++..-.|++.... ++..|+++..++++.+. ...+++ +.|++.+
T Consensus 109 alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~ 188 (805)
T PLN02724 109 ALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRED 188 (805)
T ss_pred HHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccc
Confidence 999999887 68899999987777765543 34569999999886211 112333 5566553
Q ss_pred -cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC----CCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc
Q 012124 225 -TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH----PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299 (470)
Q Consensus 225 -~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~----~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 299 (470)
.++++++.++..+|-||..+|.+.++++.+.++.+ .++++++|.+++. +..+..+..+ +-.+++.|+
T Consensus 189 ~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~----~~Dfl~~S~ 260 (805)
T PLN02724 189 DGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRY----PADFVVVSF 260 (805)
T ss_pred cCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhc----CCCEEEEec
Confidence 24568888999999999999966443333332221 1367999999865 3333444443 345899999
Q ss_pred CcccccccceeeEEEcCHHHHHHHHHHh------------------------hhccCCCChHHHHHHHHHHhcCCCChH-
Q 012124 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQ------------------------SQFTSGASSISQKAGVAALGLGYAGGE- 354 (470)
Q Consensus 300 sK~~~~~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~- 354 (470)
.|.+|.| ..+|++++.+++.+.+.... +....+++.....++.++++. ..+
T Consensus 261 HK~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~---l~~i 336 (805)
T PLN02724 261 YKIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL---LNRL 336 (805)
T ss_pred ceeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH---HHHh
Confidence 9998722 34899998888776554211 111223444555555555553 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC------CCeecCCC---------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHH
Q 012124 355 VVSKMVKAFRERRDFLVKSFGELE------GVKMSEPQ---------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 419 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~L~~~~------g~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 419 (470)
.++++.++.++..+++.+.|.+++ ++.++.+. ++. +.+.+...-+ ......+ +..|
T Consensus 337 g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~i-vsFnv~~~~~-------~~v~~~~-v~~l 407 (805)
T PLN02724 337 TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPI-VTFNLKRADG-------SWVGHRE-VEKL 407 (805)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCE-EEEEEEcCCC-------CEeCHHH-HHHH
Confidence 356777888888889999998875 46666532 344 3334432100 0002233 4456
Q ss_pred HHcCCEEEECCCCCCC-----------------------------------CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 420 LDKAQVALVPGDAFGD-----------------------------------DTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 420 ~~~~gI~v~pg~~f~~-----------------------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+.++||.++.|..+.. .+.+|+||+. +.+|++.+++.|++.+-
T Consensus 408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 6677999999876531 2679999997 89999999999999663
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=160.69 Aligned_cols=314 Identities=14% Similarity=0.140 Sum_probs=201.5
Q ss_pred CChHHHHHHHHHHHHc----CCCCCCCC---cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecC-hHHHHHHHHHHhcC--
Q 012124 107 DTPVLIAEAGINAIRE----GFTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNG-AKQSILQAVLAVCS-- 176 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~----~~~~y~~~---~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g-~~~al~~~~~~l~~-- 176 (470)
..|+.+++++.+.+.+ +...|... .-..++-+.+.+.+.+.+|. -++++|++|+| ++++++.++..++.
T Consensus 9 ~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~-~~~~~vvf~~gs~T~a~~~~~~~l~~~~ 87 (355)
T cd00611 9 ALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNI-PDNYKVLFLQGGATGQFAAVPLNLLGDK 87 (355)
T ss_pred CCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC-CCCceEEEEcCCchHHHHHHHHhcCCCC
Confidence 3488999999887743 11122222 11123333444444444564 25678999988 99999999999987
Q ss_pred -CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccC-HHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 177 -PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 177 -~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d-~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
+||.|++ .|....+.++++..|++++.++.+.+++++ + ++..+..+++++++|.+++..|.||..++ +
T Consensus 88 ~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~--------~ 157 (355)
T cd00611 88 GTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKYT-KIPDVETWDLAPDAAYVHYCSNETIHGVEFD--------E 157 (355)
T ss_pred CeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCCC-CCCCHhhcCCCCCCCEEEEeCCcccccEEcc--------e
Confidence 5555544 222222334678889999999875433221 3 33333446778999999999999999754 3
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH--------
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------- 326 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------- 326 (470)
+++.| |+++++|.+.+. +..+..+..+ + +.+.|..|.+|.+| +|++++++++.+++...
T Consensus 158 i~~~~-g~~~~VDa~qs~----g~~~idv~~~----~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd00611 158 VPDTG-GVPLVADMSSNI----LSRPIDVSKF----G--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLNYK 224 (355)
T ss_pred ecccC-CCeEEEEccccc----cCCCCCHHHh----C--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCcccHH
Confidence 44458 999999999875 2223333322 2 45566899998665 89999999887664321
Q ss_pred ---hh-hccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCe-ec-CC--CceEEEeeeccC
Q 012124 327 ---QS-QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVK-MS-EP--QGAFYLFIDFST 397 (470)
Q Consensus 327 ---~~-~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~-~~--~~g~~~~~~~~~ 397 (470)
.. ....+++.....++.++|+.- .+. .++.+.++.++..+++++.|+++||+. .. .+ ..+..+.+.+++
T Consensus 225 ~~~~~~~~~~Tpn~~~i~~L~aal~~l--~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~ 302 (355)
T cd00611 225 THADNNSLYNTPPTFAIYMMGLVLKWL--KEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGK 302 (355)
T ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCC
Confidence 11 112345555666666666641 123 478889999999999999999998852 21 11 233434555543
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
.. ...++...+. +.|+.+.+|.. ..+.+|+|+.. +.+|++.+++.|+++
T Consensus 303 ~~-----------l~~~~~~~~~-r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 303 EE-----------LEKEFLKEAE-AAGMIGLKGHR--SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred hh-----------hhHHHHHHHH-HCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 10 2344444444 45888666653 34789999987 999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=154.73 Aligned_cols=216 Identities=19% Similarity=0.245 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~ 210 (470)
+-++.+.+.+....| .+.++++++++.|+..++.+++++||.|++.+..|.+....++ ..|.++..++.
T Consensus 55 Pt~~~le~~la~Le~----g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~--- 127 (386)
T PF01053_consen 55 PTVRALEQRLAALEG----GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP--- 127 (386)
T ss_dssp HHHHHHHHHHHHHHT-----SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST---
T ss_pred ccHHHHHHHHHHhhc----ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc---
Confidence 444444444444333 3689999999999999999999999999999999998876654 47999988864
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-EEEEEeccccccccCCCCcccccccCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~-~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
-|++++++++++++++|++.+|.||+..+.+ +++|+++|+++ | +++|+|+++....+. .+ +.
T Consensus 128 ----~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~-g~~~~vVDnT~atp~~~----~p---L~-- 190 (386)
T PF01053_consen 128 ----TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEH-GDILVVVDNTFATPYNQ----NP---LE-- 190 (386)
T ss_dssp ----TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHT-TT-EEEEECTTTHTTTC-----G---GG--
T ss_pred ----hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHh-CCceEEeeccccceeee----cc---Cc--
Confidence 3899999999999999999999999988888 99999999999 8 999999999752111 11 21
Q ss_pred CCceEEEeccCcccc-cccceeeEEEcC--HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFA-MTGWRLGYIAGP--KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~-~~G~r~G~~~~~--~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+-.|++.|.+|.++ -...=.|.++++ .++.+.++..........++.....+..-++. +.-+.++..++
T Consensus 191 ~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-------l~~R~~~~~~n 263 (386)
T PF01053_consen 191 LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-------LPLRMERQNEN 263 (386)
T ss_dssp GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-------HHHHHHHHHHH
Confidence 345699999999884 222226777754 47888888777777766777765555554443 33444555667
Q ss_pred HHHHHHHhccCCCCe
Q 012124 367 RDFLVKSFGELEGVK 381 (470)
Q Consensus 367 ~~~l~~~L~~~~g~~ 381 (470)
...+.+.|++.|.++
T Consensus 264 A~~lA~~L~~hp~V~ 278 (386)
T PF01053_consen 264 AEALAEFLEEHPKVK 278 (386)
T ss_dssp HHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHhCCCCC
Confidence 777888888876653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-16 Score=160.40 Aligned_cols=354 Identities=14% Similarity=0.104 Sum_probs=214.3
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+..+......-..+.+..+++.+.+..+ -..+.+++++++++|.+
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGSEAve 121 (459)
T PRK05965 44 SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAP--GSLNHVYFTLGGSDAVD 121 (459)
T ss_pred CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCChhHHHH
Confidence 57788999887533 332 78899999999876322110001123455567777765432 13468999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHH-cCC------------EEEEecCcC--CCCCccC--------H
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRI--SENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~--~~~~~~d--------~ 217 (470)
.+++.... ++ .+|+..+-+|++....... .|. .+..++... ...+.-| +
T Consensus 122 ~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (459)
T PRK05965 122 SAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASV 201 (459)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHH
Confidence 99986431 23 5788889999987643211 111 112222211 0001112 2
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc--cccCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMW 290 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~--~~~~~~~ 290 (470)
+.+++.+. +++.+|++...+...|. ..|++.+++|.++|++| |+++|.||+...|...+.. ... ..+.++
T Consensus 202 ~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfGRtG~~-~a~~~~gv~PD- 278 (459)
T PRK05965 202 AALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL-GILFVADEVITGFGRTGPL-FACEAEGVVPD- 278 (459)
T ss_pred HHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhccCccCchh-hhHhhcCCCCC-
Confidence 56677663 35667777556666676 56889999999999999 9999999999987333321 111 122222
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
+-+++|.++ .| +++|.+++++++.+.+.. .....+++.++++..++.+.|+.-.. ++ +.+.
T Consensus 279 -----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~-~~----l~~~ 347 (459)
T PRK05965 279 -----LMTVAKGLT-SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE-GG----LLAN 347 (459)
T ss_pred -----eEEechhhc-cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh-cc----HHHH
Confidence 445789998 89 499999999999887753 12345777899998888888763110 12 2233
Q ss_pred HHHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 363 FRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 363 ~~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
.++.-+++.+.|++ .+.+.- ...-|+++-+++....... ..... ......+.+.++++ ||.+.+.. .+.
T Consensus 348 ~~~~g~~l~~~l~~l~~~~~v~~-vrG~Gl~~gie~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gll~~~~g----~~~ 420 (459)
T PRK05965 348 GQKAGPRFAAGLDALRAHPLVGD-VRGRGLLGALELVADKATK-TPFDAALDPADRIFDRAYAN-GLVFRAFG----DGV 420 (459)
T ss_pred HHHHHHHHHHHHHhhccCCCEEE-EeecceEEEEEEecccccc-CCCCchhHHHHHHHHHHHhC-CeEEEecC----CcE
Confidence 33444444444443 332211 1234565666664210000 00000 00134566666655 99987631 356
Q ss_pred EEEEee--cCHHHHHHHHHHHHHHHHhhCCCC
Q 012124 439 IRISYA--ASLTTLQAAVERIKKGLLTLRPGV 468 (470)
Q Consensus 439 iRls~~--~~~~~i~~~l~~l~~~l~~~~~~~ 468 (470)
+|+... .+++++++++++|.++++++....
T Consensus 421 i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~~ 452 (459)
T PRK05965 421 LGFAPALCCTEGEFDLIFERTRKTLDDVLADP 452 (459)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHHHhcCc
Confidence 888855 499999999999999998875543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=158.74 Aligned_cols=338 Identities=13% Similarity=0.073 Sum_probs=221.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE--EecChHHHHHHHHHHhc--------CCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL--VSNGAKQSILQAVLAVC--------SPG 178 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~--it~g~~~al~~~~~~l~--------~~g 178 (470)
.+.+.+.+...+.....++.......++.+.+.+++.+.+|.+...+++. +|+|+++++.+++.+.. ..|
T Consensus 54 ~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g 133 (431)
T TIGR01788 54 EPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAG 133 (431)
T ss_pred CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678888888765444443444555888888888988888641113454 48999999998876542 112
Q ss_pred -----CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 179 -----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 179 -----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
..|++.+-.|+++...++..|+++..+|+++ +++.+|++.|++++++++.+|+++..+|.||.+.| +++|+
T Consensus 134 ~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~I~ 209 (431)
T TIGR01788 134 KPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKALN 209 (431)
T ss_pred CCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHHHH
Confidence 3688999999999999999999999999975 34569999999999989998888999999999999 78888
Q ss_pred HHHHhCC-----CEEEEEecccccccc---CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH--HHHHH
Q 012124 254 RIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAAC 323 (470)
Q Consensus 254 ~~~~~~~-----~~~iI~Dd~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~--~~~~l 323 (470)
++|++++ ++++++|.+|+.+.. .+.....+ . ...-.-+..|.+|.+. ....+|+++..++ +.+.+
T Consensus 210 ~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~---~-~~~~DSis~s~HK~~~-~P~g~G~l~~r~~~~l~~~~ 284 (431)
T TIGR01788 210 DALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDF---R-LPRVKSINVSGHKYGL-VYPGVGWVIWRDEEALPEEL 284 (431)
T ss_pred HHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhc---C-CCCceEEEECchhccC-CCCCcEEEEEeChHHcchhh
Confidence 8888872 599999999995331 11111111 1 1233456778999861 3345888887553 22322
Q ss_pred HHHhhh-------ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC--CceEEEeee
Q 012124 324 NKIQSQ-------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFYLFID 394 (470)
Q Consensus 324 ~~~~~~-------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~~g~~~~~~ 394 (470)
.....+ .+...+...-.++..++..-.++...++++.++..+..+++.+.|++.+++++..+ ..++ +.++
T Consensus 285 ~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~i-V~Fr 363 (431)
T TIGR01788 285 IFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPL-VAFK 363 (431)
T ss_pred eecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceE-EEEE
Confidence 110000 11112222111122222211113456778888888999999999999988887754 5555 4456
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC---CCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA---FGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~---f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++.. + ....+..++.++|.++ |+.+..-.. ....-.+|+++.. +.+.++++++.|++++.++
T Consensus 364 ~~~~-~------~~~~~~~~l~~~L~~~-G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 364 LKDD-A------DPGYTLYDLSHRLRER-GWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eCCC-C------CCCcCHHHHHHHHHHC-CCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 5431 0 0011567888887655 886432111 1112368999874 7889999999999988754
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=155.77 Aligned_cols=305 Identities=17% Similarity=0.260 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCCC
Q 012124 110 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 188 (470)
Q Consensus 110 ~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y 188 (470)
.+..+++.+.+..+.... ...-..++.+.+++++ ...+++.+++++.||.+++.++ +++||+|+++..+|
T Consensus 5 ~e~~~~v~~~l~s~~~~~-~g~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~ 75 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLST-YGPYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTF 75 (363)
T ss_dssp HHHHHHHHHHHHHTCCSS-SSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-
T ss_pred HHHHHHHHHHHHhCCccC-CCHHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcc
Confidence 456777888887764332 1345577888888886 3468999999999999999998 58999999999999
Q ss_pred CChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEec
Q 012124 189 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268 (470)
Q Consensus 189 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd 268 (470)
+.....+...|++++.++++++ .+.+|++.+++.+++++++|++++. -|...+ +.+|.++|+++ |++||||.
T Consensus 76 ~~~~~ai~~~G~~pv~~Di~~~-~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d---~~~i~~~~~~~-~i~lIeD~ 147 (363)
T PF01041_consen 76 PATASAILWAGAEPVFVDIDPE-TLNIDPEALEKAITPKTKAILVVHL---FGNPAD---MDAIRAIARKH-GIPLIEDA 147 (363)
T ss_dssp THHHHHHHHTT-EEEEE-BETT-TSSB-HHHHHHHHHTTEEEEEEE-G---GGB------HHHHHHHHHHT-T-EEEEE-
T ss_pred hHHHHHHHHhccEEEEEeccCC-cCCcCHHHHHHHhccCccEEEEecC---CCCccc---HHHHHHHHHHc-CCcEEEcc
Confidence 9999999999999999999864 5789999999999999999986543 444445 88999999999 99999999
Q ss_pred ccccccc-CCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEcC-HHHHHHHHHHhhhc--------------
Q 012124 269 IYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF-------------- 330 (470)
Q Consensus 269 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~-------------- 330 (470)
+++.... .+ ..+..+ ..+.+.|| +|.+. .|- -|+++.+ +++.++++.++...
T Consensus 148 a~a~g~~~~g---~~~G~~-----gd~~~fSf~~~K~i~-~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (363)
T PF01041_consen 148 AQAFGARYKG---RPVGSF-----GDIAIFSFHPTKIIT-TGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELP 217 (363)
T ss_dssp TTTTT-EETT---EETTSS-----SSEEEEESSTTSSS--SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSS
T ss_pred ccccCceeCC---EeccCC-----CCceEecCCCCCCCc-CCC-CeeEEecHHHHHHHhhhhhccCcCcccccccccccc
Confidence 9986332 22 122222 23667777 58884 443 4787764 66777777655322
Q ss_pred ---cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCC-c---eEE-EeeeccCccCC
Q 012124 331 ---TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ-G---AFY-LFIDFSTYYGS 401 (470)
Q Consensus 331 ---~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~-~---g~~-~~~~~~~~~~~ 401 (470)
++..+.+....+..-|+. +++..+.-+++.+.+.+.|.+++++... .+. . .++ +.+.+++..
T Consensus 218 ~g~n~rm~~~~AAigl~QL~~-------L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~-- 288 (363)
T PF01041_consen 218 PGYNFRMSELQAAIGLAQLKR-------LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA-- 288 (363)
T ss_dssp S--B-B-BHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG--
T ss_pred CCcccccHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc--
Confidence 223444444444444443 4445555566777788888888776432 222 1 221 233444320
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCC--CC------C-----C-----------CcEEEEeec--CHHHHHHHHH
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDA--FG------D-----D-----------TCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~--f~------~-----~-----------~~iRls~~~--~~~~i~~~l~ 455 (470)
..+-+++.+.|.++ ||.+.+... +. . . ..|.|.+.. ++++++..++
T Consensus 289 -------~~~rd~l~~~L~~~-GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~ 360 (363)
T PF01041_consen 289 -------LADRDELVEALRAR-GIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAE 360 (363)
T ss_dssp -------CSTHHHHHHHHHHT-TBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHH
T ss_pred -------cchHHHHHHHHHHC-CCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhh
Confidence 01467888888766 999887552 10 0 0 135555554 7888888877
Q ss_pred HHH
Q 012124 456 RIK 458 (470)
Q Consensus 456 ~l~ 458 (470)
.|+
T Consensus 361 ~ir 363 (363)
T PF01041_consen 361 AIR 363 (363)
T ss_dssp HHH
T ss_pred ccC
Confidence 764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=160.11 Aligned_cols=354 Identities=10% Similarity=0.039 Sum_probs=212.3
Q ss_pred hcCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 91 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 91 ~~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.+|+.+||+..|. ..+.. +|.+.+++.+++.+.........+..+....+++.|.+.+. +...+.+++++++++|.
T Consensus 86 ~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsEA~ 164 (504)
T PLN02760 86 INGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSEAN 164 (504)
T ss_pred CCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHHHH
Confidence 3678899999874 33333 78999999999876322111112345666777777665432 11235799999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHH-HHcCCE------------EEEecCcCCCC----C-------cc
Q 012124 168 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMA-RIADAT------------PVILPTRISEN----F-------LL 215 (470)
Q Consensus 168 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~-~~~g~~------------~~~v~~~~~~~----~-------~~ 215 (470)
+.+++... .++ +.|+..+-+|++..... ...|.. +..++...... + ..
T Consensus 165 e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 244 (504)
T PLN02760 165 DTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTR 244 (504)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHH
Confidence 99998763 133 57888888898875432 223321 11122110000 0 00
Q ss_pred CHHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCC
Q 012124 216 DPKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGM 289 (470)
Q Consensus 216 d~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~ 289 (470)
..+.+++.+. +++.+|++...+.-.|. ..|++.+++|.++|++| |+++|.||++..|...+.... ....+.+
T Consensus 245 ~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~TGfGRtG~~~a~e~~gv~P- 322 (504)
T PLN02760 245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY-DILFIADEVICAFGRLGTMFGCDKYNIKP- 322 (504)
T ss_pred HHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEecchhhCCcccchhhHHHhcCCCC-
Confidence 1234666552 24556666555665675 45789999999999999 999999999977632222111 1111222
Q ss_pred CCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
| +.+|+|.++ .| +++|.+++++++.+.+... ....+++.++++..++.+.|+.-.. + .+.+
T Consensus 323 -D----ivtlgK~lg-gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~-~----~l~~ 391 (504)
T PLN02760 323 -D----LVSLAKALS-SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKE-R----NIPE 391 (504)
T ss_pred -c----EEEeccccc-CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHh-C----CHHH
Confidence 2 677899997 77 4999999999999887531 2345777899999888888864111 1 2333
Q ss_pred HHHHHHHHHHHHhccCC--CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012124 362 AFRERRDFLVKSFGELE--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439 (470)
Q Consensus 362 ~~~~~~~~l~~~L~~~~--g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~i 439 (470)
..+++-+++.+.|+++. ++......-|+++.+++.+.............-...+.+.++++ ||.+.+.. +.+
T Consensus 392 ~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g-----~~l 465 (504)
T PLN02760 392 HVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKR-GMLVRVAG-----DNI 465 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhC-CcEEEecC-----CEE
Confidence 34444444444443321 12111123356566666432100000000000134566777665 99987632 468
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 440 RISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 440 Rls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
|++.. .++++|++++++|+++++++
T Consensus 466 rl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 466 MMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99966 59999999999999998765
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-16 Score=157.48 Aligned_cols=347 Identities=14% Similarity=0.115 Sum_probs=213.4
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..... ...-..+....+++.+....+.. ..+.+++++++++|.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~~-~~~~v~f~~SGsEA~e 129 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYS-LTDFYYEPAVELAERLVEIAPGG-FEKKVFFTNSGTESNE 129 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCcc-CcccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHH
Confidence 67789999988643 333 7889999999987632211 11112355667777776543211 1368999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcCC--CCCc---------cCHHhHh
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRIS--ENFL---------LDPKVLE 221 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~--~~~~---------~d~~~l~ 221 (470)
.+++... ...++|+...-+|++....+... |. .+..++.... ..+. -+++.++
T Consensus 130 ~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 209 (441)
T PRK05769 130 AAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE 209 (441)
T ss_pred HHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHH
Confidence 9988642 22367888888999877543322 21 1223332110 0000 0123455
Q ss_pred h-hcc-----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceE
Q 012124 222 S-KLT-----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 294 (470)
Q Consensus 222 ~-~l~-----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i 294 (470)
+ .++ +++.+|++...+...|. ..+.+.+++|.++|++| |+++|.||++..+...+.. .....+.- ... +
T Consensus 210 ~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~tG~gr~G~~-~a~~~~gv-~pD-i 285 (441)
T PRK05769 210 DYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY-GILLIDDEVQTGMGRTGKM-FAIEHFGV-EPD-I 285 (441)
T ss_pred HHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccce-ehhhccCC-CCC-E
Confidence 5 221 34566666545666676 45788999999999999 9999999999976443321 11112211 112 2
Q ss_pred EEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
-+|||.++ .|+++|++++++++.+.+.. ....+++.+++.+.++.+.|+. .++ ...+..+++-+++.+.|
T Consensus 286 --vt~~K~l~-~G~p~gav~~~~~i~~~~~~-~~~~T~~g~p~~~aaa~a~L~~---l~~---~~~~~~~~~g~~l~~~L 355 (441)
T PRK05769 286 --ITLAKAIA-GGLPLGAVIGRAELMFLPPG-SHANTFGGNPVAAAAALATLEE---LEE---GLLENAQKLGEYLRKEL 355 (441)
T ss_pred --EEEccccc-CCcccEEEEEehhhhhcCCC-CCCCCCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHH
Confidence 25899998 89999999999988754321 2334566789999888888874 122 45556666666666666
Q ss_pred ccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHH
Q 012124 375 GELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 449 (470)
Q Consensus 375 ~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~ 449 (470)
+++. ++......-|+++.+.+.+... .. .......+.+.++++ ||.+.+.. .+.+|++... ++++
T Consensus 356 ~~l~~~~~~~~~vrg~G~~~~i~~~~~~~-~~----~~~~~~~~~~~~~~~-Gil~~~~~----~~~lr~~p~l~~t~~~ 425 (441)
T PRK05769 356 KELKEKYEFIGDVRGLGLMIGVELVKDRK-EP----DPKLRDKVLYEAFKR-GLLLLGAG----KSAIRIIPPLIITEEE 425 (441)
T ss_pred HHHHHhCCCeeeeecceEEEEEEeccCCc-cc----cHHHHHHHHHHHHhC-CcEEecCC----CCEEEEeCCCCCCHHH
Confidence 5431 2211112335556666632100 00 000134566666665 89887632 3678998776 9999
Q ss_pred HHHHHHHHHHHHHhh
Q 012124 450 LQAAVERIKKGLLTL 464 (470)
Q Consensus 450 i~~~l~~l~~~l~~~ 464 (470)
|++++++|+++++++
T Consensus 426 id~~~~~l~~~l~~~ 440 (441)
T PRK05769 426 ADIGLEILEEAIKEL 440 (441)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998754
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=159.68 Aligned_cols=351 Identities=13% Similarity=0.107 Sum_probs=208.6
Q ss_pred hcCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 91 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.+|+.+||+..|... +.. ++.+.+++.+++.+......+ .+....+++.+.+..+ ...+.+.+++++++|.
T Consensus 50 ~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~la~~L~~~~~--~~~~~v~f~~SGsEA~ 123 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLT----SEQEILFAEELFSYLG--LEDHKIRFVSSGTEAT 123 (433)
T ss_pred CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHH
Confidence 367889999888643 333 789999999998764321112 2445556666655433 1236899999999999
Q ss_pred HHHHHHhcC-CC-CeEEEcCCCCCChHHH----HHHcCCEE----EEe--cCcCCC----CCccCHHhHhhhcc---CCc
Q 012124 168 LQAVLAVCS-PG-DEVIIPAPFWVSYPEM----ARIADATP----VIL--PTRISE----NFLLDPKVLESKLT---EKS 228 (470)
Q Consensus 168 ~~~~~~l~~-~g-d~Vlv~~p~y~~~~~~----~~~~g~~~----~~v--~~~~~~----~~~~d~~~l~~~l~---~~~ 228 (470)
+.+++.... .| ..|+...-+|++.... ....+... ... +..... .+ -|++.+++.+. +++
T Consensus 124 e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~ 202 (433)
T PRK00615 124 MTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-NDFQIFQTVMNSLGHRV 202 (433)
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-CCHHHHHHHHHhcCCce
Confidence 999886531 33 5788888889886521 11111000 000 000000 01 26788888774 345
Q ss_pred eEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 229 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
.+|++...+...|.. .+++.+++|.++|++| |+++|.||++..+..+.........+.+ | | -+|+|.+| .|
T Consensus 203 aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~R~G~~ga~~~~gv~P--D--i--~~~gK~lg-gG 274 (433)
T PRK00615 203 AGVIFEPICANMGVVLPKPGFIEGIIQTCRRT-GSLSIMDEVVTGFRVAQGGAAAIYHVKP--D--I--TVYGKILG-GG 274 (433)
T ss_pred EEEEECCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcccccccccHhHHHHhcCCCC--C--e--EEEccccc-CC
Confidence 566665556556764 4688999999999999 9999999999876432211111112222 2 2 35899998 88
Q ss_pred ceeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--Cee
Q 012124 308 WRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--VKM 382 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--~~~ 382 (470)
+.+|++++++++++.+... ....+++.+++...++.+.|+.-.. ++.+++.++.-+..++.+.+.+.+. | +..
T Consensus 275 ~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~-g~~v~~ 352 (433)
T PRK00615 275 LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE-QGFYTQLSTLEQNFLSPIEEMIRSQ-GFPVSL 352 (433)
T ss_pred cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHc-CCCeEE
Confidence 9999999999999887532 1224556688888888888764211 2223333222222233333333332 3 333
Q ss_pred cCCCceEEEeeeccCccCC--cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGS--EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.. .|.++.+.+.+.... .............+.+.|.++ ||.+.|...- . .=++..+++++|++.++.+.++
T Consensus 353 ~r--~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~---~-~~ls~~ht~~did~~~~a~~~~ 425 (433)
T PRK00615 353 VR--YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYLSPSPFE---A-SFLSSAHSMENLDYAQNVLIDS 425 (433)
T ss_pred Ee--eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-CeeecCcccc---c-cceecCCCHHHHHHHHHHHHHH
Confidence 33 455566666432000 000000000134677777776 9998875321 1 1367777999999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
++++-
T Consensus 426 ~~~~~ 430 (433)
T PRK00615 426 LEKVF 430 (433)
T ss_pred HHHHh
Confidence 98764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=170.81 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=220.4
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH----HHHHHHHHHhcCC-CC----eEEEcCCCCCChHHHHHHcCCE
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK----QSILQAVLAVCSP-GD----EVIIPAPFWVSYPEMARIADAT 201 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~----~al~~~~~~l~~~-gd----~Vlv~~p~y~~~~~~~~~~g~~ 201 (470)
+|+.++...+.+++.+..|. ++|.++++++ +++.++++.+.++ || +|+++...|......+...|++
T Consensus 564 ~g~~~~~~~~r~~la~i~g~----~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~ 639 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGF----DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMK 639 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCC----CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCE
Confidence 78887777777777777774 8999999888 8999999999866 88 8999999999888888889999
Q ss_pred EEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC
Q 012124 202 PVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 278 (470)
Q Consensus 202 ~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~ 278 (470)
++.++.+.++ .+|+++|++++++ ++++|++++|+|-+|...+ +++|+++|+++ |+++++|.++.--...
T Consensus 640 vv~v~~d~~G--~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~-Galv~vDgAq~~a~~~-- 711 (993)
T PLN02414 640 IVVVGTDAKG--NINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDN-GGQVYMDGANMNAQVG-- 711 (993)
T ss_pred EEEeccCCCC--CcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHc-CCEEEEEecCHHhccC--
Confidence 9999997444 5999999999974 7889999999999999988 89999999999 9999999998531110
Q ss_pred CcccccccCCCCCceEEEeccCcccc----cccceeeEEEcCHHHHHHHHHH---------h--hhccCCC---Ch----
Q 012124 279 THTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKI---------Q--SQFTSGA---SS---- 336 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~i~i~S~sK~~~----~~G~r~G~~~~~~~~~~~l~~~---------~--~~~~~~~---~~---- 336 (470)
.... ...+-.++++|..|+|+ ..|-.+|++.+.+++...+-.. . ...+.|+ .+
T Consensus 712 -l~~p----~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~a 786 (993)
T PLN02414 712 -LTSP----GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSA 786 (993)
T ss_pred -cCCc----cccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhH
Confidence 1111 12355689999999774 2345589999888766554311 0 1111222 12
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE--EeeeccCccCCcccCCCCCCCHHH
Q 012124 337 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 337 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
....++..++.. ++.+.+++..+....+.+++.+.|.+..++.+..+.+.++ +.+.++... .. ...+..+
T Consensus 787 l~l~~A~~yi~~--lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~--~~----~g~~~~d 858 (993)
T PLN02414 787 LILPISYTYIAM--MGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFK--NT----AGIEPED 858 (993)
T ss_pred HHHHHHHHHHHH--HCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccc--cc----cCCCHHH
Confidence 223333444443 1467788888888899999999998754555554443211 123333110 00 0125688
Q ss_pred HHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 415 LCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+.++|+ ++||...- ..|-..+++|++.+. +.++|+.+++.|..+..+..
T Consensus 859 i~krL~-d~Gihapt-~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 859 VAKRLM-DYGFHAPT-MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred HHHHHH-HcCcEEee-eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 999998 56886544 335457899999986 88999999999988877654
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-16 Score=151.94 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=152.3
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCce
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSR 229 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 229 (470)
.+..+++++++.|+..++.+++++||+|++.+..|.+....+ +..|.++..++. .|.+.+++++++++|
T Consensus 77 ~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-------~d~~~l~~~l~~~Tr 149 (395)
T PRK08114 77 GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-------LIGADIAKLIQPNTK 149 (395)
T ss_pred CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-------CCHHHHHHhcCCCce
Confidence 467888889999999999999999999999999998777654 568999988874 378999999999999
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-
Q 012124 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG- 307 (470)
Q Consensus 230 ~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~-~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G- 307 (470)
+|++.+|+||||.+.+ +++|+++|++++ ++++|+|.+++.-. +..... .+-.+++.|.+|.++-++
T Consensus 150 lV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~--------~~~pl~-~GaDivv~S~tKyl~Ghsd 217 (395)
T PRK08114 150 VVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGV--------LFKALD-FGIDISIQAGTKYLVGHSD 217 (395)
T ss_pred EEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccc--------ccCHHH-cCCcEEEEcCcccccCCCc
Confidence 9999999999999999 899999999981 49999999997411 111111 356699999999884343
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
.-.|.++..++..+.+.........+.+++....+..-|+ -+.-+.++..++...+.+.|++.|.+
T Consensus 218 v~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~-------TL~lR~~~~~~na~~va~~L~~hp~V 283 (395)
T PRK08114 218 AMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLR-------TLGVRLRQHEESSLKVAEWLAEHPEV 283 (395)
T ss_pred ceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 5678888888777777666555666667765443333232 34445555667777788888876554
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=154.47 Aligned_cols=317 Identities=11% Similarity=0.073 Sum_probs=213.3
Q ss_pred CChHHHHHHHHHHHHc----CCCCCCCC---cCcHHHHHHHHHHHHHHcCCCCCCCcEE-EecChHHHHHHHHHHhcCCC
Q 012124 107 DTPVLIAEAGINAIRE----GFTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQIL-VSNGAKQSILQAVLAVCSPG 178 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~----~~~~y~~~---~g~~~lr~~ia~~l~~~~g~~~~~~~i~-it~g~~~al~~~~~~l~~~g 178 (470)
..|+.+++++...+.+ +...+... ....++-+.+.+.+++.++.+ +..+|+ ++++++.+++.++..++.+|
T Consensus 13 ~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl~~~g 91 (360)
T PRK05355 13 MLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNLLGGG 91 (360)
T ss_pred CCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhcCCCC
Confidence 3488999998887632 11222111 222366667777777777742 233455 55788888999999999999
Q ss_pred CeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhh-hccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 179 DEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 179 d~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
|++++..-+..+.. ++++..|.. ..+..+...+. .+..++++ .+++++++|.+++..+.||+..+ .+++|
T Consensus 92 ~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~~i--- 164 (360)
T PRK05355 92 KKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELPDT--- 164 (360)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCCCCCEEEEccCCCcceEecC--ccccc---
Confidence 99988776665543 567888865 55655432333 34444444 77778999999999999999984 25544
Q ss_pred HHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH---------
Q 012124 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI--------- 326 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~--------- 326 (470)
+ ++++|+|.+.+. +..+..+..+ + +++.|..|.+|.+| +|++++++++++++...
T Consensus 165 ---~-g~l~vVDavss~----g~~~idv~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~~ 228 (360)
T PRK05355 165 ---G-DVPLVADMSSDI----LSRPIDVSKF----G--LIYAGAQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYKT 228 (360)
T ss_pred ---C-CCcEEEEcCccc----cCccCCHHHc----c--EEEEeccccccCCc--eEEEEECHHHHhhcccCCChHHHHHH
Confidence 7 899999999875 2222333322 3 88888999998555 89999999887765431
Q ss_pred --h-hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCee-cC--CCceEEEeeeccCcc
Q 012124 327 --Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKM-SE--PQGAFYLFIDFSTYY 399 (470)
Q Consensus 327 --~-~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~--~~~g~~~~~~~~~~~ 399 (470)
. .....+++.....++.++|+.- .+. .++.+.++.++..+++++.|++++.+.. .. ..++..+.+.+|+..
T Consensus 229 ~~~~~~~~~Tp~~~~i~aL~~aL~~i--~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~ 306 (360)
T PRK05355 229 HADNDSMYNTPPTFAIYLAGLVFKWL--KEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEE 306 (360)
T ss_pred HHhcCCccCCCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChH
Confidence 1 1123456666677777777641 123 4788999999999999999999843222 11 123344556666532
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
+..++...+.++ |+...+|.. ..+.+|+|+.. +.+|++.+++.|+++++.
T Consensus 307 -----------~~~~~~~~~~~~-Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 307 -----------LDKKFLAEAKAA-GLVGLKGHR--SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred -----------HHHHHHHHHHHC-CCcccCCCC--ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 345665666544 888766653 35789999987 899999999999998764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-15 Score=148.23 Aligned_cols=290 Identities=13% Similarity=0.135 Sum_probs=203.1
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcE--EEecChHHHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i--~it~g~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 207 (470)
...++.+.+.+++.+.+|. .++++ ++|+|+++++...+... ..++++|++++-.|++....++.+|.+.+.|+.
T Consensus 62 ~~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~ 139 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITS 139 (380)
T ss_pred ChHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceecc
Confidence 3567777778888887885 33444 88999999987665443 257889999999999999999999999989998
Q ss_pred cCCCCCccCHHhHhhhccCC---ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC---EEEEEeccccccccCCCCcc
Q 012124 208 RISENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR---LLVLSDEIYEHIIYAPATHT 281 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~---~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~---~~iI~Dd~~~~~~~~~~~~~ 281 (470)
++ ++.+|++.|+++++++ +.+|+++..+|+||.+.| +++|+++|+++ | +++++|.+++.+...-....
T Consensus 140 ~~--~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~-g~~~~~lHVDaA~gg~~~p~~~~~ 213 (380)
T PRK02769 140 LP--NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKI-GIDDYYIHADAALSGMILPFVNNP 213 (380)
T ss_pred CC--CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh-CCCceEEEEEecccceeecccCcc
Confidence 64 3459999999999765 888888999999999999 88889999999 7 79999999987443211011
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-------hccCCCChHHHHHHHHHHhcCCCChH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGE 354 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~ 354 (470)
...++. .+-..+..|.+|.++ ....+|+++.+++..+.+..... ....+.+.....++...|+. ++..
T Consensus 214 ~~~d~~--~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~--lg~~ 288 (380)
T PRK02769 214 PPFSFA--DGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRS--LGSK 288 (380)
T ss_pred ccCCcc--CCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHH--HCHH
Confidence 111121 234567788999886 44678999988877665421111 11222333444555555553 1356
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 355 VVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
..+++.+...+..+++.+.|++. |++.. .|.... +.++.| + .++ .+ |-.+.+-
T Consensus 289 G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~-v~f~~~--------------~-~~~----~~--~w~l~~~--- 342 (380)
T PRK02769 289 GLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSIT-VVFPCP--------------S-ERI----WK--KWHLATS--- 342 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceE-EEEcCC--------------C-HHH----Hh--CeeEccc---
Confidence 67888888899999999999876 77654 444444 444543 2 222 22 4444432
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 434 GDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 434 ~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
++++|+.++. +.+.++++++.|...+.
T Consensus 343 --~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 343 --GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred --CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 2489999886 88889999999988765
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-18 Score=154.08 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC----C--CeEEEcCCCCCChHHHHHHcCCEEEEec
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP----G--DEVIIPAPFWVSYPEMARIADATPVILP 206 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~----g--d~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 206 (470)
.++|.+.|.+....--+...+.-.|++++|+++.++.++.+|... + -.|+...|.|+.|....+.+........
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~ 124 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA 124 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence 478888888877665555556669999999999999999998532 1 3788999999999977554332222222
Q ss_pred CcCCCCCccCHHhHhhhccCCceEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i-~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
- |....... +.....| ++++||||.|.. ++.++ +.- +..+|.|-+|..=.|. ++..
T Consensus 125 G--------da~~~~~~-~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~-~~k~I~D~AYYWPhyT-----pI~~ 181 (363)
T PF04864_consen 125 G--------DASNFKNS-DNPSPYIELVTSPNNPDGQL-----REAVL---NGS-SGKVIHDLAYYWPHYT-----PITA 181 (363)
T ss_dssp E--------ECCCGTT--S-CCGEEEEEESS-TTT-----------SS---TTT-EEEEEEE-TT-STTTS--------S
T ss_pred c--------cHHhhccC-CCCCCeEEEEeCCCCCcccc-----cchhc---CCC-Ccceeeeeeeeccccc-----ccCC
Confidence 1 21222110 1123344 689999999986 33444 243 7788999998752222 2222
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCC----hHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAG----GEVVS 357 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~----~~~~~ 357 (470)
..+..|.+.|+||.-|-+|-|+||.+.. +++.+++.......+.+.+.=.|.-++..|+. +... .+...
T Consensus 182 ---~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~ 258 (363)
T PF04864_consen 182 ---PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFH 258 (363)
T ss_dssp ----B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHH
T ss_pred ---CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHH
Confidence 1356699999999999999999998874 57888899988889999999999888877762 1110 13455
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCeec-------------CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCC
Q 012124 358 KMVKAFRERRDFLVKSFGELEGVKMS-------------EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424 (470)
Q Consensus 358 ~~~~~~~~~~~~l~~~L~~~~g~~~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 424 (470)
--++.+++|.+.|.+.+..-.-+.+. ...+.-|.|+++... .. +=|...++++|
T Consensus 259 f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e------------ed-~DC~~~l~~~~ 325 (363)
T PF04864_consen 259 FGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE------------ED-EDCYAVLREAK 325 (363)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC------------GG-SSHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc------------cc-ccHHHHHHhCC
Confidence 56677788888888888763112211 112345699999753 11 22334455779
Q ss_pred EEEECCCCCCC-CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 425 VALVPGDAFGD-DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 425 I~v~pg~~f~~-~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
|..+.|..|+. ..++|||+-.++++++.+++||.++
T Consensus 326 I~tr~G~~fga~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 326 IITRSGVLFGADSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp EEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred cccCCCCccCCCCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 99999999996 4799999999999999999999754
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-16 Score=153.92 Aligned_cols=355 Identities=14% Similarity=0.098 Sum_probs=213.0
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+..+.+. ..-..+.+..+++.+.+..+ ...+.+++++++++|.+
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~-~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve 105 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYR-SQFTSEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEANE 105 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccc-cccCCHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHHH
Confidence 67789999888533 333 79999999999886432221 11123556667777765433 12358999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cCCE------------EEEecCcCCCC--Cc--------cCH
Q 012124 169 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADAT------------PVILPTRISEN--FL--------LDP 217 (470)
Q Consensus 169 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~~--~~--------~d~ 217 (470)
.+++... .+| .+|+...-+|++....... .|.. +..++...... +. -++
T Consensus 106 ~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 185 (447)
T PRK06917 106 TAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACA 185 (447)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHH
Confidence 9998752 133 6788889999987654332 2211 11122110000 00 023
Q ss_pred HhHhhhcc----CCceEEEEcCCC-CCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPS-NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMW 290 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~-nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~ 290 (470)
+.+++.++ +++.+|++...+ +-.|. ..+++.+++|.++|++| |+++|.||++..|.-.+.... ....+.+
T Consensus 186 ~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~-g~llI~DEv~tGfGRtG~~~a~~~~gv~P-- 262 (447)
T PRK06917 186 TELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY-DILFIADEVMTGLGRTGAMFAMEHWGVEP-- 262 (447)
T ss_pred HHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc-CCEEEEechhhCcCcccchhhHHhcCCCC--
Confidence 56666664 246677665444 44454 56899999999999999 999999999987532222110 1112222
Q ss_pred CceEEEeccCcccccccc-eeeEEEcCHHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
| +-+|+|.++ .|+ ++|.+++.+++.+.+... ....+++.+++...++.+.|+.-.. ++ +.+..++
T Consensus 263 D----i~~~gK~l~-~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~-~~----l~~~~~~ 332 (447)
T PRK06917 263 D----IMTLGKGLG-AGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEK-HN----LPEKAAE 332 (447)
T ss_pred C----EEEeeehhc-cCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHH-CC----HHHHHHH
Confidence 2 456899998 886 999999999998877532 1234667889998888888764110 12 3333333
Q ss_pred HHHHHHHHhcc----CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--C-CCCc
Q 012124 366 RRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--G-DDTC 438 (470)
Q Consensus 366 ~~~~l~~~L~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--~-~~~~ 438 (470)
+-+.+.+.|++ .+ +......-|+++.+++...................+.+.++++ ||.+.|...- + ..+.
T Consensus 333 ~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~~~g~~~~~ 410 (447)
T PRK06917 333 KGEYLIKGLQKVQQQST-IIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKN-GLLLYPAVAGQDGKEGDA 410 (447)
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhC-CcEEEecccccCCCCCCE
Confidence 44444444433 32 2111223355566665221000000000000134566777665 9999874210 1 1367
Q ss_pred EEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 439 IRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 439 iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
+|++.. .++++|++++++|.++++++
T Consensus 411 i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 411 VIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 899866 59999999999999999775
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-16 Score=154.19 Aligned_cols=348 Identities=16% Similarity=0.140 Sum_probs=209.2
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+..+.. ......+....+++.+.+..+ ...+.+.+++++++|.+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEA~e 127 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSM-IGYTHSERAIRVAEKLAEISP--IENPKVLFGLSGSDAVD 127 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccc-cCccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHH
Confidence 6788999998853 3333 7889999999987532110 111112445556666655333 22368999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCC-------------EEEEecCcCCCC--Cc----cCH--------H
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISEN--FL----LDP--------K 218 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~--~~----~d~--------~ 218 (470)
.+++... .....|+....+|++....... .|. .++.+|...... +. -+. +
T Consensus 128 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (457)
T PRK05639 128 MAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLD 207 (457)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHH
Confidence 9988753 2335788888899986643322 221 123333321100 00 022 2
Q ss_pred hHhhhc------cCCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCC
Q 012124 219 VLESKL------TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 290 (470)
Q Consensus 219 ~l~~~l------~~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~ 290 (470)
.+++.+ .+++.+|++...+...|. ..+.+.+++|.++|++| |+++|.||++..|...+... .....+.+
T Consensus 208 ~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~~a~~~~gv~P-- 284 (457)
T PRK05639 208 YLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH-GILLVMDEVQTGIGRTGKWFASEWFEVKP-- 284 (457)
T ss_pred HHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCcCchHHHHHhcCCCC--
Confidence 344443 245667777555666676 56799999999999999 99999999998753333210 11112222
Q ss_pred CceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 370 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 370 (470)
| +-+|+|.++ .|+.+|.+++++++.+.. ......+++.+++...++.+.|+.-.. ++.+ +..+++-+++
T Consensus 285 D----iv~~gK~l~-gG~pi~av~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~l~~l~~-~~l~----~~~~~~g~~l 353 (457)
T PRK05639 285 D----LIIFGKGVA-SGMGLSGVIGRKELMDLT-SGSALLTPAANPVISAAAEATLEIIEE-ENLL----KNALKVGEFI 353 (457)
T ss_pred C----EEEechhhc-CCCcceeEEehHHHHhhc-CCCcccCCCcCHHHHHHHHHHHHHHHH-ccHH----HHHHHHHHHH
Confidence 2 333899998 899999999999998832 212234667788888777777763111 2222 3333344444
Q ss_pred HHHhcc----CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012124 371 VKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 445 (470)
Q Consensus 371 ~~~L~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~- 445 (470)
.+.|++ . ++......-|+++.+.+-..... ........+.+.++++ ||.+.+... ..+.+|+....
T Consensus 354 ~~~L~~l~~~~-~~~~~VrG~Gl~~gve~~~~~~~-----~~~~~~~~~~~~~~~~-Gv~~~~~g~--~~~~lr~~Ppl~ 424 (457)
T PRK05639 354 KKRLLEMKESF-EVIGDVRGKGLMIGVEIVKENGK-----PDPELTGKICWRAFEL-GLILPSYGM--FGNVIRITPPLV 424 (457)
T ss_pred HHHHHHHHHhC-CCEEeeccceeEEEEEEecCCCC-----CCHHHHHHHHHHHHhC-CeEEeecCC--CCCEEEEeCCCc
Confidence 444443 3 22222223456566665321000 0000234667777765 999876421 14689998775
Q ss_pred -CHHHHHHHHHHHHHHHHhhC
Q 012124 446 -SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 446 -~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++++|+++++++.
T Consensus 425 it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 425 ITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-16 Score=154.80 Aligned_cols=352 Identities=15% Similarity=0.135 Sum_probs=209.6
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+..+......-..+.+..+++.+.+..+. -..+.+++++++++|.+
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~sGsEAve 118 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAP-EGMRRVFFSSGGSDSVE 118 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCC-CCCCEEEEcCchHHHHH
Confidence 5778899988743 3333 688999999998763221100011235566677777654421 12368999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCC--CCCc-cCHHh-----
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRIS--ENFL-LDPKV----- 219 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~--~~~~-~d~~~----- 219 (470)
.+++.... +| .+|+...-+|++........+. .+..++.... ..+. -|++.
T Consensus 119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~ 198 (449)
T PRK07481 119 TALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARIC 198 (449)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHH
Confidence 99886431 33 5788888999986643222111 1122221100 0011 13333
Q ss_pred ---Hhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCC
Q 012124 220 ---LESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 290 (470)
Q Consensus 220 ---l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~ 290 (470)
+++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+... .....+.++
T Consensus 199 ~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~a~~~~gv~PD- 276 (449)
T PRK07481 199 ARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRH-GILLIADEVVTGFGRTGSWFGSRGWGVKPD- 276 (449)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCcCchhhHhhhcCCCCC-
Confidence 344332 35667777555655676 56888999999999999 99999999999863333211 111122222
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
+-+++|.++ .| +++|.+++++++.+.+... ....+++.+++...++.+.|+.-.. ++ +.+.
T Consensus 277 -----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~-~~----l~~~ 345 (449)
T PRK07481 277 -----IMCLAKGIT-SGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR-ED----LPAN 345 (449)
T ss_pred -----EEEEeeccc-CCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh-hh----HHHH
Confidence 445789998 88 5999999999998877531 2334677899998888888764111 22 2333
Q ss_pred HHHHHHHHHHHhcc----CCCCeecCCCceEEEeeeccCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 363 FRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 363 ~~~~~~~l~~~L~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
.++.-+.+.+.|++ .+ +......-|+++.+++....... ..... ......+.+.++++ ||.+.+.. +
T Consensus 346 ~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Glm~gi~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gvl~~~~g-----~ 417 (449)
T PRK07481 346 AAKRGAYLLEGLQPLKERFE-LVGDVRGKGLMLALDLVADKATR-EPIDPSKGYANAVADVAREN-GVLVRPSG-----T 417 (449)
T ss_pred HHHHHHHHHHHHHHHhhcCC-CeEEEeecceEEEEEeccccccc-CCCCchhHHHHHHHHHHHhC-CeEEEecC-----C
Confidence 33334444444433 32 21111233555666663210000 00000 00134566666655 99997742 3
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 438 CIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+||+... +++++++++++|.++++++.
T Consensus 418 ~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 447 (449)
T PRK07481 418 KIILSPPLVIQREDVDRIVDALDAGLSAVP 447 (449)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 58888554 99999999999999998764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-16 Score=155.87 Aligned_cols=351 Identities=13% Similarity=0.056 Sum_probs=211.5
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+............+.+..+++.|.+..+. .-+.+++++++++|.+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseAve 123 (460)
T PRK06105 46 AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPV--PMSKVFFTNSGSEAND 123 (460)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHH
Confidence 6778999988853 3333 788999999998763211111112345566677777664432 2368999999999999
Q ss_pred HHHHHhc------C-CC-CeEEEcCCCCCChHHHHHH-cCCE------------EEEecCcCCCCCc-----------cC
Q 012124 169 QAVLAVC------S-PG-DEVIIPAPFWVSYPEMARI-ADAT------------PVILPTRISENFL-----------LD 216 (470)
Q Consensus 169 ~~~~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~~~~-----------~d 216 (470)
.+++... . +| .+|+...-+|++....... .|.. +..+|......+. ..
T Consensus 124 ~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 203 (460)
T PRK06105 124 TVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRL 203 (460)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHH
Confidence 9998742 1 23 5788888889887643221 1111 1112211000000 01
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMW 290 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~ 290 (470)
++.+++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+.... ....+.+
T Consensus 204 ~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~-~~llI~DEv~tG~GRtG~~f~~~~~~v~P-- 280 (460)
T PRK06105 204 ANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY-DILLVADEVICGFGRTGNMFGCETFGIKP-- 280 (460)
T ss_pred HHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCeEEEeccccCCCcCchhhhHHhcCCCC--
Confidence 345666662 34666766555666676 46899999999999999 999999999987632232111 1112222
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
| +-+|+|.++ .| +++|.+++++++.+.+... ....+++.++++..++.+.|+.-.. + ++.+.
T Consensus 281 D----i~~~gK~lg-gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~-~----~l~~~ 350 (460)
T PRK06105 281 D----ILVMSKQLS-SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEE-R----DLVGN 350 (460)
T ss_pred C----eeeeecccc-cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHH
Confidence 2 557899998 77 6999999999998877532 1235677889998888777764111 2 23333
Q ss_pred HHHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 363 FRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 363 ~~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
.++.-+++.+.|++ .+-+. ....-|+++-+++....... ....... ....+...++++ ||.+.+. .+.
T Consensus 351 v~~~g~~l~~~L~~l~~~~~v~-~vrG~Gl~~gie~~~~~~~~-~~~~~~~~~a~~i~~~~~~~-Gvl~~~~-----g~~ 422 (460)
T PRK06105 351 AAERGARLQARLRALADHPLVG-EVRGVGLIAAVELVADKATK-TPFEPPGKVGARANAAAHEH-GVISRAM-----GDT 422 (460)
T ss_pred HHHHHHHHHHHHHHhhcCCCeE-EEEecceEEEEEEecCcccC-CCCCchhHHHHHHHHHHHHC-CeEEEec-----CCE
Confidence 34444444444443 32221 11233565656653210000 0000000 124566666654 9999773 257
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 439 IRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 439 iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|++... +++++++++++|.++++++.
T Consensus 423 i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 423 LAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred EEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 9998765 99999999999999998764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-16 Score=155.50 Aligned_cols=345 Identities=14% Similarity=0.055 Sum_probs=213.4
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+..+.. ...-..+....+++.+.+..+. .-+.+++++++++|.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGseAve 128 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAM-LAGCTHEPAIELAERLAALTGG--TLGHAFFASDGASAVE 128 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCCHHHHH
Confidence 5778999988853 3333 7889999999987632111 1111234556677777654332 2258999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cCC------------EEEEecCcCCCC--Cc--------cCH
Q 012124 169 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN--FL--------LDP 217 (470)
Q Consensus 169 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~--~~--------~d~ 217 (470)
.+++... .+| .+|+...-+|++....... .|- .+..++.....+ +. -++
T Consensus 129 ~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 208 (453)
T PRK06943 129 IALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARAL 208 (453)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHH
Confidence 9998752 123 6788889999986633222 111 122232211000 00 124
Q ss_pred HhHhhhcc---CCceEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCC
Q 012124 218 KVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~---~~~~~i~l~~-p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~ 291 (470)
+.+++.+. +++.+|++.. .+.-.|. ..|++.+++|.++|++| |+++|.||++..|...+.... ....+.++
T Consensus 209 ~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~-gillI~DEV~TG~GRtG~~fa~~~~gv~PD-- 285 (453)
T PRK06943 209 ADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY-GVHLIADEIAVGCGRTGTFFACEQAGVWPD-- 285 (453)
T ss_pred HHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCCCcchhHHHhCCCCCC--
Confidence 66777764 4667777755 3665676 66899999999999999 999999999988633332110 11122222
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
+-+++|.++ .| +++|.+++++++.+.+.. .....+++.+++...++.+.|+.-.. ++.+++. +
T Consensus 286 ----ivt~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~----~ 355 (453)
T PRK06943 286 ----FLCLSKGIS-GGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAE-DDVLARN----A 355 (453)
T ss_pred ----eEeeehhhc-cCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHH----H
Confidence 444789998 89 599999999999887753 12344667899998888888764111 2223333 3
Q ss_pred HHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 365 ERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 365 ~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
++-+++.+.|++ .+++.-. ..-|+++-+++..... .. ......+.+.++++ ||.+.+.. +.+|+
T Consensus 356 ~~G~~l~~~L~~l~~~~~v~~v-rG~Gl~~gvel~~~~~--~~----~~~~~~i~~~~~~~-Gll~~~~g-----~~l~~ 422 (453)
T PRK06943 356 RKSARLRAALAPLAAHPQVRHL-RQRGTIFAFDVALDGD--AA----RTFSRRFFEAALER-ELLLRPIG-----TTVYL 422 (453)
T ss_pred HHHHHHHHHHHHHhcCCCEEeE-eccccEEEEEEccCCC--cc----hHHHHHHHHHHHHC-CcEEEecC-----CEEEE
Confidence 333334444433 3444322 2345656666642100 00 00134567777665 99887632 46899
Q ss_pred E--eecCHHHHHHHHHHHHHHHHhhC
Q 012124 442 S--YAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 442 s--~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+ +..+++++++++++|+++++++.
T Consensus 423 ~Ppl~it~~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 423 MPPYVLDDDEIAWLAERTRATLDATL 448 (453)
T ss_pred eCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 8 44599999999999999998763
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-16 Score=145.81 Aligned_cols=324 Identities=15% Similarity=0.185 Sum_probs=225.1
Q ss_pred CCChHHHHHHHHHHHHcC---CCC----CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCC
Q 012124 106 FDTPVLIAEAGINAIREG---FTR----YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 178 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~---~~~----y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~g 178 (470)
..-++.+++++.+.+.+. ..+ -+...-...|.+.+|+..++.-- .--..+++.+.++ |+.+.+.+ ||
T Consensus 184 ms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aA--LlFsSCfVANDst--LftLak~l--pg 257 (570)
T KOG1360|consen 184 MSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAA--LLFSSCFVANDST--LFTLAKKL--PG 257 (570)
T ss_pred ccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcce--eeeeeeeeccchH--HHHHHHHC--CC
Confidence 334899999999998762 111 22233445777888877543100 0011333434433 33333333 88
Q ss_pred CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 179 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 179 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
-+|.-+.-.+.+..+.++..++.-.-... + |++.|++++.+ .+|.|-+.+.+..+|.+.| +++|++
T Consensus 258 cei~SD~gNHASMI~GIrns~v~K~IFrH---N----D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcD 327 (570)
T KOG1360|consen 258 CEIFSDEGNHASMIQGIRNSRVPKHIFRH---N----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCD 327 (570)
T ss_pred cEEeccccchHHHHHHhhhcCCcceeecc---C----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC---HHHHHH
Confidence 88888888888888888988887655553 2 88888888843 5778889999999999999 889999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCC-CCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++++| |.+-+.||++.-..|+..+. .+..-++ +....|+-|++.|+||+-| ||+.+..++++.++.+...+.+.
T Consensus 328 vah~y-GAiTFlDEVHAVGlYG~rGa-GvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFT 402 (570)
T KOG1360|consen 328 VAHKY-GAITFLDEVHAVGLYGPRGA-GVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFT 402 (570)
T ss_pred HHHHh-CceeeeehhhhhccccCCCC-CccccCCcchhhhhcccchhhhccccc---ceehhhhhHHHHHHHhcCceEEe
Confidence 99999 99999999999888875432 2222222 1344588899999999888 99999999999999887655443
Q ss_pred --CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 334 --ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 334 --~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
.|+.....+.++++.-. -+.-+.+|...+++..++.+.|.++ |+.+.+..+-+ +-+++.+.- .
T Consensus 403 TSLPP~vl~GAleaVr~lk--~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~~pSHI-iPv~vgda~-----------l 467 (570)
T KOG1360|consen 403 TSLPPMVLAGALEAVRILK--SEEGRVLRRQHQRNVKYVKQLLMEL-GIPVIPNPSHI-IPVRVGDAA-----------L 467 (570)
T ss_pred cCCChHHHHhHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHc-CCcccCCCcce-eeeeccCHH-----------H
Confidence 34544444444444210 1112455666677788888888888 88887555444 556665431 5
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
..+++..|+.++||+|..-.+... ...+||..+. +++.++.+++.+..+++++.
T Consensus 468 ~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 468 AKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred HHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 678888999999999987554332 3478888765 88999999999999998764
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-16 Score=155.32 Aligned_cols=350 Identities=13% Similarity=0.108 Sum_probs=211.2
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. +|.+.+++.+++.+..... + .-..+.+..+++.+....+ -..+.+++++++++|.+
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve 126 (451)
T PRK06062 51 EGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVA-P-AHANDARSEAARLIAERAP--GDLSKVFFTNGGADANE 126 (451)
T ss_pred CCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcC-C-ccCCHHHHHHHHHHHHhCC--CCCCEEEEcCChHHHHH
Confidence 67889999988533 333 7889999999987632211 1 2234556667777765432 12368999999999999
Q ss_pred HHHHHhcC-C-CCeEEEcCCCCCChHHHHHHc-CCE-----------EEEecCcCCC--CCc--cC-------HHhHhhh
Q 012124 169 QAVLAVCS-P-GDEVIIPAPFWVSYPEMARIA-DAT-----------PVILPTRISE--NFL--LD-------PKVLESK 223 (470)
Q Consensus 169 ~~~~~l~~-~-gd~Vlv~~p~y~~~~~~~~~~-g~~-----------~~~v~~~~~~--~~~--~d-------~~~l~~~ 223 (470)
.+++.... . ..+|+...-+|++....+... |.. +..++..... .+. -| ++.+++.
T Consensus 127 ~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~ 206 (451)
T PRK06062 127 HAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERV 206 (451)
T ss_pred HHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHH
Confidence 99886421 2 367888888999876543322 111 1122211000 010 02 5677777
Q ss_pred cc----CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEe
Q 012124 224 LT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVN 297 (470)
Q Consensus 224 l~----~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~ 297 (470)
++ +++.+|++...+...|.. .+++.+++|.++|++| |+++|.||++..|...+... .....+.+ | +.
T Consensus 207 l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~~a~~~~gv~P--D----i~ 279 (451)
T PRK06062 207 IELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH-GIVLIADEVMAGFGRTGKWFAIEHFGVVP--D----LI 279 (451)
T ss_pred HHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeeccccCCCcCcHHHHHHhcCCCC--C----ee
Confidence 74 345666665555556765 5889999999999999 99999999999863222110 11112222 2 55
Q ss_pred ccCcccccccc-eeeEEEcCHHHHHHHHHH--hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HHHHHH
Q 012124 298 GFSKAFAMTGW-RLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR-DFLVKS 373 (470)
Q Consensus 298 S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 373 (470)
+|+|.++ .|+ ++|.+++.+++.+.+... ....+++.+++...++.+.|+.-.. ++ +.++.++.- +++.+.
T Consensus 280 t~gK~lg-gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~----l~~~~~~~G~~~l~~~ 353 (451)
T PRK06062 280 TFAKGVN-SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEE-EG----IVENAARIGAEVLGPG 353 (451)
T ss_pred eechhhh-cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHh-cC----HHHHHHHHHHHHHHHH
Confidence 7899998 885 999999999998887532 2334677889988888888864111 12 222222222 233333
Q ss_pred hcc----CCCCeecCCCceEEEeeeccCccC-Ccc-cCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--
Q 012124 374 FGE----LEGVKMSEPQGAFYLFIDFSTYYG-SEA-EGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-- 444 (470)
Q Consensus 374 L~~----~~g~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~-~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-- 444 (470)
|++ .+.+.-. ..-|+++.+.+..... ... .... .......+.+.|+++ ||.+.+. .+.+|++..
T Consensus 354 L~~l~~~~~~v~~v-rG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gvl~~~~-----~~~lrl~ppl~ 426 (451)
T PRK06062 354 LRELAERHPSVGEV-RGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKER-GLLPFVN-----GNRIHVVPPCT 426 (451)
T ss_pred HHHHHhcCCcEEeE-eccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHC-CcEEeec-----CCEEEEECCcc
Confidence 332 3222111 2335555666532100 000 0000 000134677777665 9987652 357899874
Q ss_pred cCHHHHHHHHHHHHHHHHhhC
Q 012124 445 ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.++++|++++++|+++++++.
T Consensus 427 ~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 427 VTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 499999999999999998764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-15 Score=149.43 Aligned_cols=355 Identities=14% Similarity=0.135 Sum_probs=222.4
Q ss_pred HHHHHHHhcCCCeEEccCCCCC--CCC---hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE
Q 012124 84 DQATALAQAGVSVIRLAAGEPD--FDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158 (470)
Q Consensus 84 ~~~~~~~~~~~~~i~l~~g~~~--~~~---~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 158 (470)
++.+.+.+.|.+...|...+-. +.+ ...+.+++...+..+.-.|..++.+.+|.+.+++++ | .+.++
T Consensus 26 ~r~~~l~~ag~n~f~l~~~~v~IDLlSDS~T~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~l----G----~e~aV 97 (460)
T PRK13237 26 EREAAMKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYY----G----FKHVV 97 (460)
T ss_pred HHHHHHHHcCCCcccCCcCcEEEECcccCCchhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHH----C----CCeEE
Confidence 4445555666655555555421 111 133444444444445667988889999999999996 3 35799
Q ss_pred EecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH-HHHHHcCCEEEEecCc--------CCCCCccCHHhHhhhccCC--
Q 012124 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTR--------ISENFLLDPKVLESKLTEK-- 227 (470)
Q Consensus 159 it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~--------~~~~~~~d~~~l~~~l~~~-- 227 (470)
.+++++.|+.+++...++|||.| +..+|.... ..+...|+..+.+..+ ....+.+|++.|+++++++
T Consensus 98 ~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~ 175 (460)
T PRK13237 98 PTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGA 175 (460)
T ss_pred EeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccC
Confidence 99999999998777678999975 444444433 3377888866655322 1234679999999999653
Q ss_pred --ceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEecccccc----cc---CCCCcccccc----cCCCCCce
Q 012124 228 --SRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI----IY---APATHTSFAS----LPGMWERT 293 (470)
Q Consensus 228 --~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~----~~---~~~~~~~~~~----~~~~~~~~ 293 (470)
++++.+..++|.. |.+.|.++++++.++|++| |+.||+|.+...- .- .+....++.. +. .--.
T Consensus 176 ~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~-Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~--s~aD 252 (460)
T PRK13237 176 ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMF--SYAD 252 (460)
T ss_pred CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHc-CCEEEEECcchhcChhhhcccccccCCCcHhHHhhhcc--CcCc
Confidence 3456667777876 7999999999999999999 9999999987631 10 0111122211 11 1223
Q ss_pred EEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhc----cCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012124 294 LTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF----TSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367 (470)
Q Consensus 294 i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~----~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (470)
+...|++|.++.+ . -|+++. ++++.++++...-.+ +++ .+.-...+++..|..... .+++.... ...
T Consensus 253 ~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~-~~y~~~ri----~~~ 325 (460)
T PRK13237 253 GCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ-YEYIEHRV----GQV 325 (460)
T ss_pred EEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch-HHHHHHHH----HHH
Confidence 6677899998633 2 377775 667888887764332 111 112133344433443221 23333333 345
Q ss_pred HHHHHHhccCCCCeecCCCceEEEeeeccCccC-CcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCC-CCC---------
Q 012124 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVP-GDA-FGD--------- 435 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~-f~~--------- 435 (470)
++|.+.|.+. |+.+..|.+|.-++++...... .+... -....++..|..+.||--.- |+. ++.
T Consensus 326 ~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~----~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~ 400 (460)
T PRK13237 326 RYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQ----FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHY 400 (460)
T ss_pred HHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCccc----ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCC
Confidence 6777777776 8999999999888886433200 00011 15678888888888885432 222 111
Q ss_pred --CCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012124 436 --DTCIRISYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 436 --~~~iRls~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
-.-+||++.. +.+.++-..++|..+.++
T Consensus 401 ~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 401 PKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred CccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 1369999986 888899998888887764
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-16 Score=154.23 Aligned_cols=344 Identities=14% Similarity=0.085 Sum_probs=210.3
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+-.+.. ......+....+++.+.+... -..+.+++++++++|.+
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~-~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e 120 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAP-AFQMGHPKAFELANRIAEIAP--GGLNHVFFTNSGSESVD 120 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcc-cCCcCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHH
Confidence 5778899988753 2333 7889999999987522111 111223555667777765432 12368999999999999
Q ss_pred HHHHHhcC-------C-CCeEEEcCCCCCChHHHHH-HcC------------CEEEEecCcCC---CCCcc--------C
Q 012124 169 QAVLAVCS-------P-GDEVIIPAPFWVSYPEMAR-IAD------------ATPVILPTRIS---ENFLL--------D 216 (470)
Q Consensus 169 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~-~~g------------~~~~~v~~~~~---~~~~~--------d 216 (470)
.+++.... + ..+|+...-+|++.....- ..| ..+..+|...+ ..+.. .
T Consensus 121 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (442)
T PRK13360 121 TALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAEL 200 (442)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHH
Confidence 99886431 2 2578888999998653221 111 11222332210 00111 1
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 290 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~ 290 (470)
.+.+++.+. +++.+|++...+...|.. .+++.+++|.++|++| |+++|.||++..+...+... .....+.+
T Consensus 201 ~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~-g~llI~DEv~tG~GrtG~~~a~~~~gv~P-- 277 (442)
T PRK13360 201 ADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAPFAAQYFGVTP-- 277 (442)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccchhhhhcCCCC--
Confidence 456777763 345566665556666764 6788999999999999 99999999997753222211 11112222
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
| +-+|+|.++ .| +++|.+++++++.+.+... ....+++.+++...++.+.|+.- ++ ..+.++
T Consensus 278 D----ivt~gK~l~-gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l---~~--~~l~~~ 347 (442)
T PRK13360 278 D----LLTCAKGLT-NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY---ER--EGLLTR 347 (442)
T ss_pred c----eeeeeeccc-cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHH
Confidence 2 347899997 67 7899999999998876531 23356678888888888877641 11 123344
Q ss_pred HHHHHHHHHHHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012124 363 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~i 439 (470)
.+++-+++.+.|+++ +.+.-. ...|++.-+.+..... .......++...|+++ ||.+.++ .+.+
T Consensus 348 ~~~~g~~l~~~l~~l~~~~~v~~v-rG~Gl~~~~~l~~~~~------~~~~~~~~~~~~l~~~-Gvl~~~~-----~~~l 414 (442)
T PRK13360 348 AARLAPYWEDALHSLRDAPHVIDI-RNLGLVGAVELAPRDG------KPGKRAYEVFLKCFEK-GLMIRYT-----GDIL 414 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCCeeee-eccceEEEEEEecCCC------CcchhHHHHHHHHHHC-CcEEEec-----CCEE
Confidence 455555555555543 222111 1224444444422100 0001345677777765 9998763 2579
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 440 RISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 440 Rls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
||+.. .+++++++++++|.++++++
T Consensus 415 r~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 415 ALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 99965 49999999999999998764
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=145.22 Aligned_cols=165 Identities=23% Similarity=0.232 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH-HHHHHcCCEEEEecCcCCCC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTRISEN 212 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~ 212 (470)
.++++.+++++. .+.+++++++|+++++.++++++.+++++|++.+++|++.. ..++..|++++.++.+.++.
T Consensus 3 ~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 76 (170)
T cd01494 3 EELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGY 76 (170)
T ss_pred HHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCc
Confidence 577888888763 46789999999999999999999988999999999999998 88899999999999875443
Q ss_pred CccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 213 FLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 213 ~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
...+.+.+++.. .++++++++++++||+|..++ .++|.++|+++ |+++|+|++|..+...... ..... .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~-~~~li~D~a~~~~~~~~~~----~~~~~-~~ 147 (170)
T cd01494 77 GGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVDAASAGGASPAPG----VLIPE-GG 147 (170)
T ss_pred cchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHc-CCEEEEecccccccccccc----ccccc-cc
Confidence 333333554444 568889999999999999998 58888999999 9999999999986654321 11111 34
Q ss_pred ceEEEeccCcccccccceeeEEEc
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
..+++.|++|.++ + .++|++++
T Consensus 148 ~d~~~~s~~K~~~-~-~~~G~l~~ 169 (170)
T cd01494 148 ADVVTFSLHKNLG-G-EGGGVVIV 169 (170)
T ss_pred CCEEEEEcccccC-C-CceEEEEe
Confidence 5688999999997 3 77999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.3e-16 Score=153.10 Aligned_cols=338 Identities=13% Similarity=0.083 Sum_probs=211.0
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+.. ...-..+.+..+++.|.+..+ ...+.+++++++++|.+
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve 117 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHPPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcc-ccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHH
Confidence 57789999887532 222 7889999999987632111 111123556677777765433 22368999999999999
Q ss_pred HHHHHhcC------C-CCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcCCC---CC-ccCHHhHhhh
Q 012124 169 QAVLAVCS------P-GDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISE---NF-LLDPKVLESK 223 (470)
Q Consensus 169 ~~~~~l~~------~-gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~---~~-~~d~~~l~~~ 223 (470)
.+++.... . ..+|+....+|++....+... +- .++.+|..... .+ .-|++.+++.
T Consensus 118 ~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~ 197 (428)
T PRK07986 118 VAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARL 197 (428)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHH
Confidence 99886432 2 367888899999865332221 21 11122221000 00 1256677777
Q ss_pred cc---CCceEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEe
Q 012124 224 LT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVN 297 (470)
Q Consensus 224 l~---~~~~~i~l~~-p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~ 297 (470)
++ +++.+|++.. .+.-.|. ..+++.+++|.++|++| |+++|.||++..+...+... .....+.+ | |+
T Consensus 198 l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~-g~lLI~DEv~tG~GrtG~~fa~~~~gv~P--D--i~-- 270 (428)
T PRK07986 198 MAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE-GILLIADEIATGFGRTGKLFACEHAGIAP--D--IL-- 270 (428)
T ss_pred HHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCCeeeecccCCCC--C--EE--
Confidence 74 3455666654 3555565 55779999999999999 99999999997753222210 01111222 1 33
Q ss_pred ccCccccccc-ceeeEEEcCHHHHHHHHHH-----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 012124 298 GFSKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 371 (470)
Q Consensus 298 S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 371 (470)
+|+|.++ .| +.+|.+++++++.+.+... ....+++.+++...++.+.|+.-.. + ...+..+++-+++.
T Consensus 271 t~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~-~----~~~~~~~~~g~~l~ 344 (428)
T PRK07986 271 CLGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLES-G----DWQQQVAAIEAQLR 344 (428)
T ss_pred Eechhhh-CCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-C----CHHHHHHHHHHHHH
Confidence 5899997 88 5999999999999888642 1334667788888888877763110 1 22333444444444
Q ss_pred HHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cC
Q 012124 372 KSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--AS 446 (470)
Q Consensus 372 ~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~ 446 (470)
+.|+++ +.+.-. ...|+++-+.+.+.. ....+.+.|+++ ||.+.+. .+.+|+... .+
T Consensus 345 ~~l~~l~~~~~i~~v-Rg~Gl~~~ve~~~~~-----------~~~~~~~~l~~~-Gl~~~~~-----g~~i~~~Ppl~it 406 (428)
T PRK07986 345 EELAPLRDAPMVADV-RVLGAIGVVETTRPV-----------NMAALQRFFVEQ-GVWIRPF-----GKLIYLMPPYIIL 406 (428)
T ss_pred HHHHHHhcCCCEEeE-eccceEEEEEeCCcc-----------cHHHHHHHHHHC-CcEEEec-----CCEEEEeCCCCCC
Confidence 444443 322111 123555666664321 356777777765 9998773 257999655 49
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012124 447 LTTLQAAVERIKKGLLT 463 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~ 463 (470)
++++++++++|.+++++
T Consensus 407 ~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 407 PEQLQRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999864
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=153.19 Aligned_cols=356 Identities=15% Similarity=0.089 Sum_probs=208.6
Q ss_pred hcCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-CCcEEEe-cChHH
Q 012124 91 QAGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-PDQILVS-NGAKQ 165 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-~~~i~it-~g~~~ 165 (470)
.+|+.++|+..|.... .. ++.+.+++.+++.+..... ...-..+.+..+++.+......... .+.++++ +++++
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSE 138 (464)
T PRK06938 60 VEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLH-TLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTD 138 (464)
T ss_pred CCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccc-ccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHH
Confidence 3688899998886433 33 7889999999986432111 1111235555666666543221111 1356564 78999
Q ss_pred HHHHHHHHhc-CCC-CeEEEcCCCCCChHHHHHH-cCC------------EEEEecCcCCC--CCc--------cCHHhH
Q 012124 166 SILQAVLAVC-SPG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISE--NFL--------LDPKVL 220 (470)
Q Consensus 166 al~~~~~~l~-~~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~--~~~--------~d~~~l 220 (470)
|.+.+++... -.| .+|+...-+|++....... .|. .+..+|..... .++ .+++.+
T Consensus 139 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 218 (464)
T PRK06938 139 AVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYL 218 (464)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHH
Confidence 9999888643 133 6788888899987654332 110 12233332110 000 135677
Q ss_pred hhhccC------CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCc
Q 012124 221 ESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWER 292 (470)
Q Consensus 221 ~~~l~~------~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~ 292 (470)
++.+.+ ++.+|++...+.-.|. ..+++.++++.++|++| |+++|.||+...|...+... .....+.++
T Consensus 219 ~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~~a~e~~gv~PD--- 294 (464)
T PRK06938 219 ENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA-GIPLIVDEIQSGFGRTGKMFAFEHAGIIPD--- 294 (464)
T ss_pred HHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcHHHHHHhcCCCCC---
Confidence 777742 4566666444554566 45799999999999999 99999999999873333210 011122222
Q ss_pred eEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
+-+++|.++ .|+++|.+++.+++ +.+.......+++.++++..++.+.|+.-.. ++.+ +..++.-+++.+
T Consensus 295 ---iv~~gKglg-gG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~-~~l~----~~~~~~G~~l~~ 364 (464)
T PRK06938 295 ---VVVLSKAIG-GSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKE-HRLA----EHAAAMGERLRE 364 (464)
T ss_pred ---EEEeecccc-CCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hHHH----HHHHHHHHHHHH
Confidence 445789998 89999999998774 5443323445777899998888888864110 2222 233333333333
Q ss_pred Hhc----cCCCCeecCCCceEEEeeeccCccCCc-ccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-
Q 012124 373 SFG----ELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA- 444 (470)
Q Consensus 373 ~L~----~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~- 444 (470)
.|+ +.+ +......-|+++.+++....... ...... ......+.+.++++ ||.+.++..+ .+.+|+...
T Consensus 365 ~L~~l~~~~~-~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~g~~--~~~l~~~Ppl 440 (464)
T PRK06938 365 HLRQLQRDYP-QLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRR-GLILELGGRH--GSVVRFLPPL 440 (464)
T ss_pred HHHHHHHhCC-CeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHC-CeEEeecCCC--CCEEEEECCC
Confidence 333 333 22222244666677763210000 000000 00124566677655 9998875322 367888755
Q ss_pred -cCHHHHHHHHHHHHHHHHhhC
Q 012124 445 -ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 445 -~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+++++++++++++++++++.
T Consensus 441 ~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 441 IITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred ccCHHHHHHHHHHHHHHHHHHh
Confidence 499999999999999998653
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-16 Score=153.91 Aligned_cols=340 Identities=13% Similarity=0.039 Sum_probs=211.0
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|. ..+.. ++.+.+++.+++.+..+.. ...-..+....+++.+....+ ...+.+++++++++|.+
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve 118 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIM-FGGFTHEPAVELAQKLLEILP--PSLNKIFFADSGSVAVE 118 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCCchHHHH
Confidence 677899998874 23333 6889999999887632111 101123444556666654332 23468999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHH-HcCC-------------EEEEecCcCCC---C-CccCHHhHhh
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISE---N-FLLDPKVLES 222 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~---~-~~~d~~~l~~ 222 (470)
.+++.... +| .+|+....+|++...... ..|- .+..+|..... . ..-+++.+++
T Consensus 119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~ 198 (429)
T PRK06173 119 VAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQD 198 (429)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHH
Confidence 98886431 33 578888899988542221 1110 01122221000 0 0014566777
Q ss_pred hcc---CCceEEEEcCC-CCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEE
Q 012124 223 KLT---EKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTV 296 (470)
Q Consensus 223 ~l~---~~~~~i~l~~p-~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i 296 (470)
.+. +++.+|++... +.-.|.. .+++.+++|.++|++| |+++|.||++..+...+... .....+.+ | |
T Consensus 199 ~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~~a~~~~gv~P--D--i-- 271 (429)
T PRK06173 199 LLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY-GVLLIFDEIATGFGRTGKLFALEHAGVVP--D--I-- 271 (429)
T ss_pred HHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc-CCeEEecchhcCCCcCCcchHHHhcCCCC--C--E--
Confidence 774 35667777653 6666764 7899999999999999 99999999997753223211 11112222 2 3
Q ss_pred eccCccccccc-ceeeEEEcCHHHHHHHHH-----HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTG-WRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 370 (470)
Q Consensus 297 ~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 370 (470)
.+|+|.++ .| +.++.+++++++.+.+.. .....+++.+++...++.+.|+.- ++ ....+..+++-+.+
T Consensus 272 v~~gK~l~-gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i---~~--~~~~~~~~~~g~~l 345 (429)
T PRK06173 272 MCIGKALT-GGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL---LE--SPWQQNIQRIEAQL 345 (429)
T ss_pred EEeehhhh-CCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHH
Confidence 34899997 88 489999999999887753 122235567888888888777631 11 12344445555555
Q ss_pred HHHhccCCCCeecC--CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 371 VKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 371 ~~~L~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
.+.|+++.+..... ...|+.+-+.+.+.. +...+.+.|+++ ||.+.+.. +.+|+.... +
T Consensus 346 ~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~-----------~~~~i~~~l~e~-Gi~v~~~g-----~~l~~~Ppl~it 408 (429)
T PRK06173 346 KQELAPAAEFDSVAEVRVLGAIGVVEMKEPV-----------NMATLQPRFVEH-GIWVRPFG-----KLVYIMPPFIIS 408 (429)
T ss_pred HHHHHHhhcCCCeeeeeccceEEEEEeCCcc-----------cHHHHHHHHHHC-CeEEEecC-----CEEEEeCCccCC
Confidence 55555331222111 123565666765421 456788887765 99997742 588998765 9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012124 447 LTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~ 464 (470)
++++++++++|++++++.
T Consensus 409 ~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 409 PDELSQLTSGLLRVLKQE 426 (429)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-16 Score=154.44 Aligned_cols=354 Identities=14% Similarity=0.091 Sum_probs=209.2
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|. ..+.. ++.+.+++.+++.+..+.........+.+..+++.+....+ ...+.+++++++++|.+
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e 125 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEAND 125 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHH
Confidence 577889998875 22333 78899999999876322111112234666677777765443 23468999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CCE------------EEEecCcC--CCCCccC--------H
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DAT------------PVILPTRI--SENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~~------------~~~v~~~~--~~~~~~d--------~ 217 (470)
.+++.... +| .+|+...-+|++........ |.. +..++... ...+..+ +
T Consensus 126 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 205 (456)
T PRK07480 126 TVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAA 205 (456)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHH
Confidence 99886421 33 46888888898865322221 111 11122110 0000001 2
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~ 291 (470)
+.+++.+. +++.+|++...+.-.|. ..+.+.+++|.++|++| |+++|.||++..|.-.+... .....+.++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~a~~~~gv~PD-- 282 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKY-DILLVADEVICGFGRTGEWFGSQHFGIKPD-- 282 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcchhhhhhcCCCCC--
Confidence 55554442 35667777555655676 56788899999999999 99999999998763222210 111122222
Q ss_pred ceEEEeccCcccccccc-eeeEEEcCHHHHHHHHH----HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH-HHHHH
Q 012124 292 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRE 365 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~----~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~-~~~~~ 365 (470)
+-+|+|.++ .|+ ++|.+++.+++.+.+.. .....+++.++++..++.+.|+.-.. ++.+++.+ +.-..
T Consensus 283 ----iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~~~~g~~ 356 (456)
T PRK07480 283 ----LMTIAKGLT-SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRD-EGIVERVRDDTGPY 356 (456)
T ss_pred ----eeeeehhhc-cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Confidence 456899998 785 89999999999887731 22345778899999999888864211 12223321 21122
Q ss_pred HHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC-HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012124 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN-SESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~ 444 (470)
.++.+.+ +.+.+-+.-. ..-|+++.+++.+.... ......... ...+.+.++++ ||.+.+. .+.+|++..
T Consensus 357 l~~~l~~-l~~~~~i~~v-rG~Glm~gie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----~~~l~~~Pp 427 (456)
T PRK07480 357 LQKRLRE-LADHPLVGEV-RGVGLVGAIELVKDKAT-RERFEAGGGVGTICRDHCFAN-GLIMRAV-----GDRMIISPP 427 (456)
T ss_pred HHHHHHH-hhcCCCeeeE-EeecceEEEEEeccccc-cccCcchhhHHHHHHHHHHHC-CcEEeec-----CCEEEEECC
Confidence 2222332 3333211111 23356566666321000 000000001 13455666655 8988762 257899887
Q ss_pred c--CHHHHHHHHHHHHHHHHhhC
Q 012124 445 A--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 445 ~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
. ++++|++++++|.+++++++
T Consensus 428 l~it~~eid~~~~~l~~al~~~~ 450 (456)
T PRK07480 428 LVITHAEIDELVEKARKALDATA 450 (456)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999998764
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=152.82 Aligned_cols=336 Identities=16% Similarity=0.086 Sum_probs=201.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-CCC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-FTR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAK 164 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~ 164 (470)
..|+|-..++- .++.+.+++...+.+. ..+ |+...-..++.+...+...+.++. ..+.+++ .++++
T Consensus 35 ~~l~liasen~--~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~--~~~~~~~nv~~~SG~ 110 (475)
T PLN03226 35 KGLELIASENF--TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRL--DPEKWGVNVQPLSGS 110 (475)
T ss_pred cCeeEecCCcc--CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCC--CcceeEEecCcCchH
Confidence 44677666554 4677888888887432 222 222222333433333345555553 3344433 35666
Q ss_pred HHHHHHHHHhcCCCCeEEEcCC---CCCChHHHH---HHcCCEE----EEecCcCCCCCccCHHhHhhhcc-CCceEEEE
Q 012124 165 QSILQAVLAVCSPGDEVIIPAP---FWVSYPEMA---RIADATP----VILPTRISENFLLDPKVLESKLT-EKSRLLIL 233 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p---~y~~~~~~~---~~~g~~~----~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l 233 (470)
.|...++.+|++|||+|+..+. +|.++.... +..+... +++.++. ++..+|+++|++.+. .++++|++
T Consensus 111 ~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~pklIv~ 189 (475)
T PLN03226 111 PANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRPKLIIA 189 (475)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCCeEEEE
Confidence 7788889999999999998553 333322111 1112221 2344443 345699999999886 46776655
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
. .++ +|...+ +++|.++|+++ |+++++|+++..........++. + ....++++|++|++ +|.+-|++
T Consensus 190 ~-~S~-~s~~~D---~a~i~~ia~~~-ga~LlvD~AH~~Gli~~~~~~~p--~---~~~Div~~t~hK~L--~GP~Gg~I 256 (475)
T PLN03226 190 G-ASA-YPRDWD---YARMRKIADKV-GALLMCDMAHISGLVAAQEAASP--F---EYCDVVTTTTHKSL--RGPRGGMI 256 (475)
T ss_pred e-cCc-CCCccC---HHHHHHHHHHc-CCEEEEEchhhhCcccCCCCCCC--C---CCCeEEEecCcccc--cCCCceEE
Confidence 3 333 677777 67888999999 99999999998644433222211 1 13448899999998 23344888
Q ss_pred EcCHHHH-----------HH---HHHHhh-hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 314 AGPKHFV-----------AA---CNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 314 ~~~~~~~-----------~~---l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
+++++++ +. +..... .+..++++....++..+++.-. ....++.+++..++.++|.+.|.+.
T Consensus 257 ~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~--~~~~~~~~~~~~~na~~L~~~L~~~- 333 (475)
T PLN03226 257 FFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFKAYQKQVKANAAALANRLMSK- 333 (475)
T ss_pred EEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHHHHHhC-
Confidence 8877544 21 221111 1223344444444445555311 1224566788888999999999885
Q ss_pred CCeecCCC-ceEEEeeec-cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEee------c
Q 012124 379 GVKMSEPQ-GAFYLFIDF-STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYA------A 445 (470)
Q Consensus 379 g~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----~~~~iRls~~------~ 445 (470)
|+.+..+. ....+++++ +..+ +..++.+.| ++.||.+..+...+ .+..+|++.. .
T Consensus 334 G~~l~~~~t~~hi~lv~~~~~gi-----------~~~~~~~~L-~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~ 401 (475)
T PLN03226 334 GYKLVTGGTDNHLVLWDLRPLGL-----------TGSRVEKVL-DLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGL 401 (475)
T ss_pred CCEEEcCCCCCCEEEEEccCCCC-----------CHHHHHHHH-HHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCC
Confidence 88876532 234466777 3332 556666655 56699998764322 2457898533 2
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 012124 446 SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~l~~ 463 (470)
++++|++..+.|.++++.
T Consensus 402 ~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 402 VEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 788999999999888873
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=152.84 Aligned_cols=345 Identities=16% Similarity=0.121 Sum_probs=211.7
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+-.+.. ...-..+....+++.|.+..+. ..+.+++++++++|.+
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~-~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAve 123 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAP-AFQMGHPLAFELAERLAELAPG--GLDHVFFTNSGSESVD 123 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHH
Confidence 57789999888532 333 7889999999987522111 1111234455677777654321 2368999999999999
Q ss_pred HHHHHhcC-------C-CCeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcC---CCCCcc--------C
Q 012124 169 QAVLAVCS-------P-GDEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRI---SENFLL--------D 216 (470)
Q Consensus 169 ~~~~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~---~~~~~~--------d 216 (470)
.+++.... + ..+|+...-+|++........ |. .+..+|... ...+.. .
T Consensus 124 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (445)
T PRK09221 124 TALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAEL 203 (445)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHH
Confidence 98886431 2 257888888998865432211 10 122232211 000000 1
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMW 290 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~ 290 (470)
.+.+++.+. +++.+|++...+...|. ..+.+.+++|.++|++| |+++|.||++..|...+... .....+.+
T Consensus 204 ~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~~~~~~~~gv~P-- 280 (445)
T PRK09221 204 ADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAAFAAERFGVTP-- 280 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCCcCchhhHHHhcCCCC--
Confidence 346666663 34566666555666777 45788999999999999 99999999998753222211 11112222
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
| +-+|+|.++ .| +++|.+++++++++.+.. .....+++.+++...++.+.|+.- ++ ..+.++
T Consensus 281 D----i~~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i---~~--~~l~~~ 350 (445)
T PRK09221 281 D----IITFAKGLT-NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIY---RE--EDLFER 350 (445)
T ss_pred C----EEEeccccc-cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHH---Hh--ccHHHH
Confidence 2 457899997 67 689999999999887643 122346678888888887777641 11 133455
Q ss_pred HHHHHHHHHHHhccCCCCee--cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012124 363 FRERRDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 440 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iR 440 (470)
.++.-+++.+.|+++.+... ....-|+.+.+++..... ........+.+.++++ ||.+.++ .+.+|
T Consensus 351 ~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~------~~~~~~~~~~~~~~~~-Gv~~~~~-----~~~lr 418 (445)
T PRK09221 351 AAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPG------APGARGYEAFMKCFEK-GLLVRYT-----GDTIA 418 (445)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccc------cccchHHHHHHHHHHC-CeEEeec-----CCEEE
Confidence 55666666666655422111 111235555555532100 0001245677777765 8998764 25799
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 441 ISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 441 ls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++... ++++|++++++|+++++++
T Consensus 419 ~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 419 LSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHhh
Confidence 98654 9999999999999998764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-15 Score=152.24 Aligned_cols=353 Identities=12% Similarity=0.040 Sum_probs=206.3
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. +|.+.+++.+++.+.........+..+....+++.+....+. ..+.+++++++++|.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~e 129 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPG--HYSHAIYTNSGSEANE 129 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHHHH
Confidence 5778899887742 2333 789999999998763221111123455666677777654431 2368999999999999
Q ss_pred HHHHHhc-------CCCCe-EEEcCCCCCChHHH-HHHcCCE-----------EEEecCcC--CCCCcc--------CHH
Q 012124 169 QAVLAVC-------SPGDE-VIIPAPFWVSYPEM-ARIADAT-----------PVILPTRI--SENFLL--------DPK 218 (470)
Q Consensus 169 ~~~~~l~-------~~gd~-Vlv~~p~y~~~~~~-~~~~g~~-----------~~~v~~~~--~~~~~~--------d~~ 218 (470)
.+++... ++++. |+...-+|++.... +...|.+ +..+|... ..++.. +.+
T Consensus 130 ~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 209 (460)
T PRK12403 130 VLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAAL 209 (460)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHH
Confidence 9998763 23333 44556688876432 2222221 22222110 000011 134
Q ss_pred hHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCce
Q 012124 219 VLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 293 (470)
Q Consensus 219 ~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
.+++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|.-.+... ....+.- ...
T Consensus 210 ~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~~-a~e~~gv-~PD- 285 (460)
T PRK12403 210 QLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY-DVLLCADEVIGGFGRTGEWF-AHEHFGF-EPD- 285 (460)
T ss_pred HHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchhh-hhhhcCC-CCC-
Confidence 5555542 34556666555666676 45789999999999999 99999999998763323211 1111111 111
Q ss_pred EEEeccCcccccccc-eeeEEEcCHHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHH
Q 012124 294 LTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRERR 367 (470)
Q Consensus 294 i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~-~~~~~~~ 367 (470)
|+ +|+|.++ .|+ .+|.+++.+++.+.+... ....+++.+++...++.+.|+.-.. +..+++.+ +.-...+
T Consensus 286 iv--~~gK~lg-gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~~l~~~~~~~~g~~l~ 361 (460)
T PRK12403 286 TL--SIAKGLT-SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-EGVVTRVKDDTGPYLQ 361 (460)
T ss_pred eE--EEccccc-ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 33 4899998 885 999999999988877421 1234667889998888888864111 22233332 2222233
Q ss_pred HHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC----HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012124 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN----SESLCRYLLDKAQVALVPGDAFGDDTCIRISY 443 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~ 443 (470)
+.|.+...+.+ +......-|+++.+++..... . ...... ...+...++++ ||.+.+. .+.+|++.
T Consensus 362 ~~L~~l~~~~~-~i~~vrG~Gl~~gie~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----~~~~~l~P 430 (460)
T PRK12403 362 RCLREVFGDHP-LVGEVQGAGLVAALQFAEDKA---T-RKRFANENDLAWRCRTIGFEE-GVIIRST-----LGRMIMAP 430 (460)
T ss_pred HHHHHHHhcCC-CEEeEeecceEEEEEEccCcc---c-cccccchhHHHHHHHHHHHhC-CEEEEec-----CCEEEEEC
Confidence 33333333342 222222345656666632100 0 000001 12344445555 8998753 14588887
Q ss_pred ec--CHHHHHHHHHHHHHHHHhhC
Q 012124 444 AA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 444 ~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.. ++++++++++.|+++++++.
T Consensus 431 pl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 431 ALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 99999999999999998874
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-15 Score=151.01 Aligned_cols=338 Identities=14% Similarity=0.074 Sum_probs=209.3
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+.. ...-..+....+++.+.+..+. .-+.+++++++++|.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~e 114 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVM-FGGLTHEPAIKLTRKLLNLTDN--GLDHVFYSDSGSVSVE 114 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcc-cCCcCCHHHHHHHHHHHhhCCC--CcCEEEEeCCcHHHHH
Confidence 67788999888533 333 7899999999987632111 0001234455666666543321 2368999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcCCCCCc-cC----HHhHh
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISENFL-LD----PKVLE 221 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~~~-~d----~~~l~ 221 (470)
.+++.... ++ .+|+....+|++....+... +. ....+|........ -+ .+.++
T Consensus 115 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 194 (422)
T PRK05630 115 VAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLE 194 (422)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHH
Confidence 98886431 23 57888899999865433221 21 11223322110000 01 24455
Q ss_pred hhccCCceEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEec
Q 012124 222 SKLTEKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNG 298 (470)
Q Consensus 222 ~~l~~~~~~i~l~~-p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S 298 (470)
+.+.+++.+|++.. .+.-.|. ..+.+.+++|.++|++| |+++|.||++..+...+.... ......++ +-+
T Consensus 195 ~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~-g~llI~DEv~tG~GrtG~~~a~~~~gv~PD------i~t 267 (422)
T PRK05630 195 LLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH-DILLIADEIATGFGRTGELFATLAAGVTPD------IMC 267 (422)
T ss_pred HHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEecceeCCCcCchhhHHHhcCCCCC------eee
Confidence 55556777777765 3666776 56788999999999999 999999999987633222110 11122221 337
Q ss_pred cCccccccc-ceeeEEEcCHHHHHHHHHH------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 371 (470)
Q Consensus 299 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 371 (470)
|+|.++ .| ..+|++++++++.+.+... ....+++.+++...++.+.|+.-.. +...+ ..+++-+++.
T Consensus 268 ~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~-~~~~~----~~~~~g~~l~ 341 (422)
T PRK05630 268 VGKALT-GGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIET-GMWRK----QVKRIEAELI 341 (422)
T ss_pred eechhh-cCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHh-CcHHH----HHHHHHHHHH
Confidence 899997 77 5899999999998887531 2235667888888888887764111 12222 3333334444
Q ss_pred HHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 372 KSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 372 ~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
+.|++ .+.+.-.. .-|+++-+.+.+.. +...+.+.++++ ||.+.+. .+.+|+.... +
T Consensus 342 ~~L~~l~~~~~v~~vR-g~Gl~~~ie~~~~~-----------~~~~~~~~~~~~-Gl~~~~~-----g~~l~~~PpL~it 403 (422)
T PRK05630 342 AGLSPLAHLPGVADVR-VLGAIGVVEMEQPV-----------DMEEATQAAVDH-GVWLRPF-----GRLVYVMPPYITT 403 (422)
T ss_pred HHHHHhhcCCCeeeee-ccccEEEEEECCcc-----------cHHHHHHHHHHC-CeEEEec-----CCEEEEECCccCC
Confidence 43433 33322111 23565667775321 355777777765 9998763 2578888764 9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012124 447 LTTLQAAVERIKKGLLT 463 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~ 463 (470)
++++++++++|+++++.
T Consensus 404 ~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 404 SEQIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998864
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-15 Score=151.07 Aligned_cols=348 Identities=14% Similarity=0.116 Sum_probs=208.7
Q ss_pred cCCCeEEccCC-CCCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 92 AGVSVIRLAAG-EPDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 92 ~~~~~i~l~~g-~~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
+|+.+||+..+ ...+. .+|.+.+++.+++.+... ....-..+....+++.+.+..+. ..+.+++++++++|.+.
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~--~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGseAve~ 145 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPF--SPRRFTNETAIECAEKLTEIAGG--ELNRVLFAPGGTSAIGM 145 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCC--ccCccCCHHHHHHHHHHHHhCCC--CCCEEEECCCcHHHHHH
Confidence 67789998733 12233 378899999999875322 11112245666777777665431 23689999999999999
Q ss_pred HHHHhc--CCCCeEEEcCCCCCChHHH-HHHcCCE------------EEEecCcCC--CCCc-c------CHHhHhhhcc
Q 012124 170 AVLAVC--SPGDEVIIPAPFWVSYPEM-ARIADAT------------PVILPTRIS--ENFL-L------DPKVLESKLT 225 (470)
Q Consensus 170 ~~~~l~--~~gd~Vlv~~p~y~~~~~~-~~~~g~~------------~~~v~~~~~--~~~~-~------d~~~l~~~l~ 225 (470)
+++... ....+|+...-+|++.... +...|.. +..+|.... ..+. . +++.+++.+.
T Consensus 146 AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 225 (459)
T PRK06082 146 ALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIE 225 (459)
T ss_pred HHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHh
Confidence 888642 2236788888889887532 2222221 122221100 0000 0 1345777664
Q ss_pred --CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcc
Q 012124 226 --EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 226 --~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~ 302 (470)
+++.+|++...++..+...+++.+++|.++|++| |+++|.||++..|...+.... ....+.+ | |+ +|+|.
T Consensus 226 ~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~fa~e~~gv~P--D--iv--~~gKg 298 (459)
T PRK06082 226 KEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKH-NVLLIIDEIPNGMGRTGEWFTHQAYGIEP--D--IL--CIGKG 298 (459)
T ss_pred cCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchhhHhHhhCCCC--C--EE--Eeccc
Confidence 3455666654566556678889999999999999 999999999987633332100 1112222 2 22 48999
Q ss_pred ccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----C
Q 012124 303 FAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----L 377 (470)
Q Consensus 303 ~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 377 (470)
++ .| +.+|.+++++++...........+++.++++..++.+.|+.- ++ +.+.+..+++-+++.+.|++ .
T Consensus 299 l~-gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 372 (459)
T PRK06082 299 LG-GGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVI---EQ--EGLLEKVKADSQFMRERLLEMKAKY 372 (459)
T ss_pred cc-CCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 98 78 599999999887644321111257778999888888877641 11 12334444444444444443 3
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~ 455 (470)
+ +......-|+++.+++...... ..........+...++++ ||.+.+. ..+.+|++... ++++|+++++
T Consensus 373 ~-~i~~vrG~Gl~~~ve~~~~~~~---~~~~~~~~~~~~~~~~~~-Gvl~~~~----~~~~i~~~Ppl~it~~eid~~~~ 443 (459)
T PRK06082 373 P-LIGDVRGIGLLWGVELVTDRHT---KERAYDEAEAVLYRCLNN-GLSFKVS----QGNVIQLSPPLIITREELTQALA 443 (459)
T ss_pred C-CeeeeeeccceeEEEEccCccc---cCccHHHHHHHHHHHHhC-CCEEEec----CCCEEEEeCCCccCHHHHHHHHH
Confidence 2 2111123356566676421000 000000134566666655 9988763 13679998654 9999999999
Q ss_pred HHHHHHHhhC
Q 012124 456 RIKKGLLTLR 465 (470)
Q Consensus 456 ~l~~~l~~~~ 465 (470)
++++++.++.
T Consensus 444 ~l~~~l~~~~ 453 (459)
T PRK06082 444 ILEEAIAKIC 453 (459)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-15 Score=150.92 Aligned_cols=350 Identities=13% Similarity=0.094 Sum_probs=209.8
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. +|.+.+++.+++.+..+.........+.+..+++.+..... ...+.+++++++++|.+
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve 126 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAP--GDLNHVFLTTGGSTAVD 126 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHH
Confidence 67789999888532 333 78899999999876321111001224566777777765432 22368999999999999
Q ss_pred HHHHHhc------C-CC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCC--CCCccC--------H
Q 012124 169 QAVLAVC------S-PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRIS--ENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~~d--------~ 217 (470)
.+++... . +| .+|+...-+|++....+... |. .+..++.... ..++.+ +
T Consensus 127 ~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07036 127 SALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLV 206 (466)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHH
Confidence 9988642 1 22 67888888999876443221 11 1222222110 011111 2
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc---ccccCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS---FASLPGM 289 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~---~~~~~~~ 289 (470)
+.+++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+.. .. ...+.++
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~~~~~~~gv~PD 284 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRY-DILYISDEVVTGFGRLGHF-FASEAVFGIQPD 284 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCcCchh-hhhhhhcCCCCC
Confidence 33444442 35667777555666676 56889999999999999 9999999999876322211 11 1122222
Q ss_pred CCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
+-+|+|.++ .| +++|.+++++++.+.+... ....+++.+++...++.+.|+.-.. + .+.+
T Consensus 285 ------ivt~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~-~----~l~~ 352 (466)
T PRK07036 285 ------IITFAKGLT-SGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMER-E----GLCE 352 (466)
T ss_pred ------EEEEccccc-cCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHh-C----CHHH
Confidence 456899998 88 5999999999998877531 2234667899998888888764110 1 2223
Q ss_pred HHHHHHHHHHHHhc---cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 362 AFRERRDFLVKSFG---ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 362 ~~~~~~~~l~~~L~---~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
..++.-+++.+.|+ +.+-+ .....-|+++.+++.+.................+...++++ ||.+.+.. +.
T Consensus 353 ~~~~~g~~l~~~L~~l~~~~~v-~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~-----~~ 425 (466)
T PRK07036 353 HVREVGPYFEERLASLRELPLV-GDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQER-GLLVRPLE-----HL 425 (466)
T ss_pred HHHHHHHHHHHHHHHhccCCCE-EEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHC-CcEEeecC-----CE
Confidence 33333333434433 33222 11223456667777432100000000000134566666665 99987631 46
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 439 IRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 439 iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+|++... ++++|++++++|.++++++
T Consensus 426 ~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 426 CVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 8888554 9999999999999988765
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-15 Score=150.14 Aligned_cols=359 Identities=11% Similarity=0.091 Sum_probs=211.9
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+... +....-..+....+++.+....+ -..+.+++++++++|.+
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve 104 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAY-AHTSFFTTEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVE 104 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHH
Confidence 6778999998853 3333 78899999999876321 11111123555667777765432 12368999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHH-cCCE------------EEEecCcCC-CCC--cc--------C
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADAT------------PVILPTRIS-ENF--LL--------D 216 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~-~~~--~~--------d 216 (470)
.+++.... +| .+|+...-+|++....... .|-. +..++.... ... .. .
T Consensus 105 ~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (443)
T PRK07483 105 AALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRL 184 (443)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHH
Confidence 99886431 33 5688888899887643322 1111 112221100 000 00 0
Q ss_pred HHhHhhhcc----CCceEEEEcCCCC-Ccc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc--cccCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSN-PTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPG 288 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~n-PtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~--~~~~~ 288 (470)
++.+++.+. +++.+|++...+. -.| ...+++.+++|.++|++| |+++|.||++..|...+. .... ..+.+
T Consensus 185 ~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~-~~a~~~~gv~P 262 (443)
T PRK07483 185 ADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRY-GVLLILDEVMCGMGRTGT-LFACEEDGVAP 262 (443)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHh-CCEEEEecceeCcccCcH-HHHHhhcCCCC
Confidence 245665552 3566777654453 235 467889999999999999 999999999988633321 1111 12222
Q ss_pred CCCceEEEeccCcccccccc-eeeEEEcCHHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+ +-+++|.++ .|+ ++|.+++++++.+.+... ....+++.++++..++.+.|+.-.. ++.+++.++.=
T Consensus 263 D------iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~-~~l~~~~~~~g 334 (443)
T PRK07483 263 D------LVTIAKGLG-AGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAE-DGLLANVRARG 334 (443)
T ss_pred C------eeeehhhhc-cCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 2 445799998 896 999999999998877532 2335677899998888888763111 22233333322
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCC-C-C-CCCcE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDA-F-G-DDTCI 439 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gI~v~pg~~-f-~-~~~~i 439 (470)
+..++.|.+.+++.+.+.-. ..-|+++-+++.+..... ..... ......+.+.++++ ||.+.+... . + .++.+
T Consensus 335 ~~l~~~L~~l~~~~~~i~~v-RG~Glm~gie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gll~~~~~~~~~~~~~~~l 411 (443)
T PRK07483 335 EQLRARLRERLGQHPHVGDI-RGRGLFVGVELVADRATK-APFDPALKLHARIKREAMAR-GLMVYPMGGTIDGVRGDHV 411 (443)
T ss_pred HHHHHHHHHHHhcCCCeeeE-eecccEEEEEEeeccccc-CCCCchhhHHHHHHHHHHHC-CcEEEecCccccCCCCCEE
Confidence 22333333333334322111 233555556653210000 00000 00124577777765 999876421 1 1 13689
Q ss_pred EEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 440 RISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 440 Rls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
|+.... +++++++++++|+++++++..
T Consensus 412 ~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 412 LLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 997664 999999999999999987654
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-15 Score=147.83 Aligned_cols=213 Identities=13% Similarity=0.167 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~ 209 (470)
..+++.++++. |. .+.|++++|+ .++.+++..++++||+|++.+..|.+.. ..++..|++++.++ ++
T Consensus 72 ~~le~~la~l~----g~---~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~ 142 (437)
T PRK05613 72 EALENRIASLE----GG---VHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NP 142 (437)
T ss_pred HHHHHHHHHHh----CC---CeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CC
Confidence 44555555553 42 2345555555 8888888888999999999999998874 34577899999987 21
Q ss_pred CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
.|++.+++++++++++|++.++.||+|.+.+ +++|+++|+++ |+++|+|.+++.... ..++ .
T Consensus 143 -----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~-gi~livD~t~a~g~~----~~p~-~---- 204 (437)
T PRK05613 143 -----DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRN-QVPLIVDNTIATAAL----VRPL-E---- 204 (437)
T ss_pred -----CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCeEEEECCCccccc----cChH-H----
Confidence 2789999999999999999999999999999 88999999999 999999999864211 1111 1
Q ss_pred CCceEEEeccCcccccccceeeE-EEcCHHH-----------------------------------H-HHHHHHhhhccC
Q 012124 290 WERTLTVNGFSKAFAMTGWRLGY-IAGPKHF-----------------------------------V-AACNKIQSQFTS 332 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G~r~G~-~~~~~~~-----------------------------------~-~~l~~~~~~~~~ 332 (470)
.+-.+++.|++|.++-.|.-+|- ++...++ . +...........
T Consensus 205 ~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 284 (437)
T PRK05613 205 LGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGA 284 (437)
T ss_pred hCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCC
Confidence 24469999999998634544444 4432110 0 111223334455
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
+.+++....+..-|+ -+.-+.++..++...+.+.|++.|.+
T Consensus 285 ~~~p~~a~l~~rgl~-------TL~lR~~~~~~nA~~lA~~L~~hp~V 325 (437)
T PRK05613 285 TLSPFNAWVTAQGLD-------TLSLRLERHNENAIKVAEFLNNHEKV 325 (437)
T ss_pred CCCHHHHHHHHcccC-------cHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 666665444333332 23444455567777788888877654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=145.28 Aligned_cols=318 Identities=19% Similarity=0.159 Sum_probs=197.0
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCCC---cC--cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeE
Q 012124 108 TPVLIAEAGINAIREGF-TRYTPN---AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~-~~y~~~---~g--~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~V 181 (470)
.++.+.+++.+.+.... ..|.-. .| +..+++.+++++ | .+..+++++++.|+.+++.+ +.+||+|
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~----G----ae~a~vv~sgtaAl~l~l~~-l~~GdeV 168 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT----G----AEDALVVNNNAAAVLLALNA-LAAGKEV 168 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHH-hCCCCEE
Confidence 47889999988876531 222111 12 235566666654 4 24677888888999988866 4799999
Q ss_pred EEcCCCCCC------hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC--cc--cCCCHHHHHH
Q 012124 182 IIPAPFWVS------YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP--TG--SVYPKNLLDE 251 (470)
Q Consensus 182 lv~~p~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP--tG--~~~s~~~~~~ 251 (470)
++.+..+.. ....++..|++++.++.+. ..+++++++++++++++|++.+++|| +| ...+ +++
T Consensus 169 Ivs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---l~e 241 (464)
T PRK04311 169 IVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---LAE 241 (464)
T ss_pred EEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---HHH
Confidence 998764431 2245678899999998642 14789999999999999999999998 34 4556 899
Q ss_pred HHHHHHhCCCEEEEEecccccc----ccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHI----IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~----~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
|+++|++| |+++|+|...+.+ .|+-...+.+..... .+-.+++.|.+|.+|-| ..|++++.+++++.+++..
T Consensus 242 I~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~-~GaDiv~fSg~K~LgGp--~~G~i~g~~~li~~l~~~~ 317 (464)
T PRK04311 242 LAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPTVQELLA-AGVDLVTFSGDKLLGGP--QAGIIVGKKELIARLKKHP 317 (464)
T ss_pred HHHHHHHc-CCeEEEECCCcccccchhccCCCCCchhhHHh-cCCcEEEecCcccccCC--ceEEEEEcHHHHHHHhhch
Confidence 99999999 9999999964432 121111122222111 35569999999998523 5899999999998776321
Q ss_pred hhccCCCChHHHHHHHHHHh----cCCC-----ChHHHHHHHHHHHHHHHHHHHHhccCC--CC--eecCC---------
Q 012124 328 SQFTSGASSISQKAGVAALG----LGYA-----GGEVVSKMVKAFRERRDFLVKSFGELE--GV--KMSEP--------- 385 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~----~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~--~~~~~--------- 385 (470)
..-..-.......++.+.|. .... ..+.+....+..+++.+.+.+.|+..+ ++ ++...
T Consensus 318 ~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~ 397 (464)
T PRK04311 318 LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSL 397 (464)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCC
Confidence 11111122333333333332 1000 001122233555667777788887643 22 33321
Q ss_pred -C---ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc-CCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHH
Q 012124 386 -Q---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-AQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 459 (470)
Q Consensus 386 -~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~ 459 (470)
. ..+-+-++... .+..++.++|.+- --|..+- .++.+.|.+.+ .+++++..+++|.+
T Consensus 398 p~~~~~~~~v~~~~~~------------~~~~~l~~~lr~~~~~i~~r~-----~~~~~~ld~r~~~~~~~~~~~~~~~~ 460 (464)
T PRK04311 398 PVDRLPSAAVTLTPKD------------RSLEALAARLRLLPPPVIGRI-----EDGRLLLDLRTLEEEDEERLAAALLE 460 (464)
T ss_pred cCCCCCeEEEEEeCCC------------CCHHHHHHHHhcCCCCEEEEE-----ECCEEEEEeCcCCHHHHHHHHHHHHH
Confidence 1 12222222221 1678888877532 1243331 35788888888 88899999999988
Q ss_pred HHH
Q 012124 460 GLL 462 (470)
Q Consensus 460 ~l~ 462 (470)
++.
T Consensus 461 ~~~ 463 (464)
T PRK04311 461 ALN 463 (464)
T ss_pred Hhh
Confidence 764
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-15 Score=146.43 Aligned_cols=337 Identities=15% Similarity=0.086 Sum_probs=211.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-C------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCC--CcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-F------TRYTPNAGTLELRSAICHKLKEENGLSYTP--DQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~--~~i~it~g~~~ 165 (470)
..|.|-..++- +++.+.+++...+.+. . ..|+..+...++.....++..+.||.+... -||-.- +++.
T Consensus 149 ~~l~LIASEN~--~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~ 225 (586)
T PLN02271 149 KGIELIASENF--VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTS 225 (586)
T ss_pred cCeeecccccc--CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHH
Confidence 34566555443 3566777766666542 1 223333444566666667777778754321 355555 5556
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHH---------HHcCCEE--EEecCcCCCCCccCHHhHhh-hccCCceEEEE
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMA---------RIADATP--VILPTRISENFLLDPKVLES-KLTEKSRLLIL 233 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~--~~v~~~~~~~~~~d~~~l~~-~l~~~~~~i~l 233 (470)
|...++.+|++|||+|+..+..+.++.... ...|..+ ++++++.+ ...+|.|++++ +...++|+|++
T Consensus 226 AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~rPKLII~ 304 (586)
T PLN02271 226 ANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDFRPKILIC 304 (586)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhcCCeEEEE
Confidence 777788999999999999888777665422 3345444 44445433 34599999998 55779999988
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
..-.|| ..++ ++++.++|+++ |+++++|.++......+...++.. ....++.+|.+|++ .|-|-|.+
T Consensus 305 g~Sayp--r~~D---~~~i~eIAdev-GA~LmvD~AH~aGLIa~g~~~sP~-----~~aDvvt~TTHKtL--rGPrGG~I 371 (586)
T PLN02271 305 GGSSYP--REWD---YARFRQIADKC-GAVLMCDMAHISGLVAAKECVNPF-----DYCDIVTSTTHKSL--RGPRGGII 371 (586)
T ss_pred Cchhcc--CcCC---HHHHHHHHHHc-CCEEEEECcccccccccCcCCCCC-----cCCcEEEeCCcccC--CCCCceEE
Confidence 777788 5677 77888889999 999999999986444332222111 12348999999998 56677888
Q ss_pred EcCHH--------------------HHHHHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 314 AGPKH--------------------FVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 314 ~~~~~--------------------~~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
+..++ +.+++.+...+. ..++......+.+.++..... .++ +...++..++.+.|.+
T Consensus 372 ~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~-~ef-k~Ya~QVv~NAkaLA~ 449 (586)
T PLN02271 372 FYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT-PEY-KAYMQQVKKNAQALAS 449 (586)
T ss_pred EecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC-hHH-HHHHHHHHHHHHHHHH
Confidence 87542 445555443332 122222223333344442111 233 5666667778888888
Q ss_pred HhccCCCCeecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEeec-
Q 012124 373 SFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA- 445 (470)
Q Consensus 373 ~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----~~~~iRls~~~- 445 (470)
.|.+. |+++... ..+..+|+++... + -.-..+++++++.||.+.--..++ .++.|||....
T Consensus 450 ~L~~~-G~~vv~ggTdnHlvLvDl~~~-g----------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~al 517 (586)
T PLN02271 450 ALLRR-KCRLVTGGTDNHLLLWDLTTL-G----------LTGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAM 517 (586)
T ss_pred HHHHC-CCeEeeCCCCcceeeecCccc-C----------CCHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHH
Confidence 88877 8876532 3356678888542 1 133455667788899885433332 24689998653
Q ss_pred -----CHHHHHHHHHHHHHHHH
Q 012124 446 -----SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 446 -----~~~~i~~~l~~l~~~l~ 462 (470)
.++++++..+-|.++++
T Consensus 518 T~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 518 TSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred HhcCCCcHHHHHHHHHHHHHHh
Confidence 56888888777777765
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-15 Score=149.24 Aligned_cols=349 Identities=12% Similarity=0.055 Sum_probs=212.1
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|... +.. ++.+.+++.+++.+..+.. ...-..+.+..+++.+....+ ...+.+++++++++|.+
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve 121 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVI-LAGFSHEPVIELSERLVKITP--PGLSRCFYADNGSSAIE 121 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHH
Confidence 57788999888532 333 7889999999987632111 111123556667777765332 13368999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCCC--CCcc--------CH
Q 012124 169 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE--NFLL--------DP 217 (470)
Q Consensus 169 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~~--------d~ 217 (470)
.+++... .+| .+|+...-+|++....+... |. .+..+|..... .++. ++
T Consensus 122 ~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l 201 (466)
T PRK07030 122 VALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMF 201 (466)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHH
Confidence 9988752 123 57888889999876443322 21 12222221100 0001 24
Q ss_pred HhHhhhcc---CCceEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCC
Q 012124 218 KVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~---~~~~~i~l~~-p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~ 291 (470)
+.+++.+. +++.+|++.. .+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+... .....+.++
T Consensus 202 ~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~TGfGRtG~~~a~~~~gv~PD-- 278 (466)
T PRK07030 202 AHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY-GVHLIHDEIAVGFGRTGTMFACEQAGIRPD-- 278 (466)
T ss_pred HHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCccccchHHHhcCCCCC--
Confidence 55677664 3566676654 3555565 66889999999999999 99999999998864333211 111122222
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+-+|+|.++ .| +++|.+++++++.+.+.. .....+++.+++...++.+.|+.-.. ++ +.++.
T Consensus 279 ----iv~~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~-~~----l~~~~ 348 (466)
T PRK07030 279 ----FLCLSKALT-GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQ-DN----VIENN 348 (466)
T ss_pred ----EEeeehhcc-CCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-cC----HHHHH
Confidence 445789998 89 599999999999887742 12345667899998888888764111 22 22333
Q ss_pred HHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012124 364 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439 (470)
Q Consensus 364 ~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~i 439 (470)
++.-+++.+.|++ .+.+.-. ..-|+++.+++...... ..... .......+.++++++ ||.+.+. .+.+
T Consensus 349 ~~~G~~l~~~L~~l~~~~~v~~v-rG~Gl~~gie~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-Gvl~~~~-----g~~i 420 (466)
T PRK07030 349 RALARRMAEATAHLADHPHVAEV-RQTGMILAIEMVQDKAS-KTPYPWQERRGLKVYQHALER-GALLRPL-----GSVV 420 (466)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEe-EeceeEEEEEeccCccc-cccCcchhHHHHHHHHHHHHC-CeEEEec-----CCEE
Confidence 3333444444433 3322212 23466666666321000 00000 000123567777765 9998763 2478
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 440 RISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 440 Rls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
|+... .++++|++++++|+++++++
T Consensus 421 ~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 421 YFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 88655 49999999999999999886
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=147.87 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=196.3
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcE--EEecChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i--~it~g~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 207 (470)
...++.+.+.+++.+.+|. +++++ ++|+|+++++...+.... .++..|++..-.|++....++.+|.++..||+
T Consensus 63 ~a~~~e~~v~~~ia~llg~--~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~ 140 (374)
T PLN03032 63 HSRQFEVGVLDWFARLWEL--EKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPT 140 (374)
T ss_pred cHHHHHHHHHHHHHHHhCC--CCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeee
Confidence 4577888888888888884 56666 999999999988777643 35568999999999999999999999999998
Q ss_pred cCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-----EEEEEeccccccccCCCC
Q 012124 208 RISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-----LLVLSDEIYEHIIYAPAT 279 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~-----~~iI~Dd~~~~~~~~~~~ 279 (470)
+.+ +.+|++.|++++++ ++.+++++..+|+||.+-| +++|+++|+++ + +|+.+|.+|+.+...-..
T Consensus 141 d~~--g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~-g~~~~~~~lHvDaA~gg~~~p~~~ 214 (374)
T PLN03032 141 LPS--GEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKEL-GYTEDRFYIHCDGALFGLMMPFVS 214 (374)
T ss_pred CCC--CcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHh-CCCCCCeeEEEEccchhhhhhccC
Confidence 754 45999999999976 4667777888999999999 88889999998 6 599999999764321000
Q ss_pred cccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc-----cCCCCh--HHHHHHHHHHhcCCCC
Q 012124 280 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-----TSGASS--ISQKAGVAALGLGYAG 352 (470)
Q Consensus 280 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-----~~~~~~--~~q~a~~~~l~~~~~~ 352 (470)
..+..++. ..-.-+..|.+|.++ ....+|.++..++.++.+.....+. +...+. .....+...|.. ++
T Consensus 215 ~~~~~~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~--~G 289 (374)
T PLN03032 215 RAPEVTFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRR--KG 289 (374)
T ss_pred CCcccCCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHH--hC
Confidence 01111121 123356678899886 4467899998887766543211111 122222 222333333332 24
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012124 353 GEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 431 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~ 431 (470)
.+.++++.+...+..+++.+.|++. ++.+ ..|.... +.++.|. ... +.+ |-.+.+
T Consensus 290 ~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~-V~f~~~~--------------~~~----~~~--~w~l~~-- 345 (374)
T PLN03032 290 YRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSST-VVFERPM--------------DEA----FIK--KWQLAC-- 345 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceE-EEEcCCC--------------cHh----Hhh--eeeecc--
Confidence 5677788888888999999999886 6654 4555554 4445442 111 222 444433
Q ss_pred CCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 432 AFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 432 ~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
..+++|+.++. +.+.++++++.|++
T Consensus 346 ---~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 346 ---EGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred ---cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 12489999886 77889998888765
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-15 Score=148.70 Aligned_cols=350 Identities=12% Similarity=0.103 Sum_probs=211.6
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. +|.+.+++.+++.+-.+.. ...-..+....+++.+.+..+ ...+.+++++++++|.+
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve 130 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHST-LLGLANVPSILLAEKLIEVVP--EGLKKVFYSDSGATAVE 130 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHH
Confidence 6788999988753 2333 7889999999987622111 111123455666666665433 12368999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCC--CCCc--------cCH
Q 012124 169 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRIS--ENFL--------LDP 217 (470)
Q Consensus 169 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~--------~d~ 217 (470)
.+++... .+| .+|+...-+|++....+... |. .+..+|.... ..++ -++
T Consensus 131 ~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~ 210 (460)
T PRK06916 131 IAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHL 210 (460)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHH
Confidence 9988653 233 67888899999866433322 21 1222322100 0000 135
Q ss_pred HhHhhhcc---CCceEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCC
Q 012124 218 KVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~---~~~~~i~l~~-p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~ 291 (470)
+.+++.++ +++.+|++.. .+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+... .....+.+ |
T Consensus 211 ~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~TG~GRtG~~~a~~~~gv~P--D 287 (460)
T PRK06916 211 EELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY-NVLFITDEVATGFGRTGKMFACEHENVTP--D 287 (460)
T ss_pred HHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCcCchhhHHHhcCCCC--C
Confidence 56677664 4566777755 4665676 46999999999999999 99999999998763222210 01112222 1
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+-+++|.++ .| +++|.+++++++.+.+.. .....+++.+++...++.+.|+.- ++ ..+.+..
T Consensus 288 ----iv~~gK~l~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l---~~--~~l~~~~ 357 (460)
T PRK06916 288 ----IMTAGKGLT-GGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELY---EK--TNLIEQV 357 (460)
T ss_pred ----eeeeehhhh-cCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHH
Confidence 345899998 88 599999999999887642 123346677899888888877631 11 1233344
Q ss_pred HHHHHHHHHHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCC-HHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012124 364 RERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN-SESLCRYLLDKAQVALVPGDAFGDDTCI 439 (470)
Q Consensus 364 ~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~L~~~~gI~v~pg~~f~~~~~i 439 (470)
+++-+++.+.|+++ +.+.-. ..-|+++-+.+.+..... +....... ...+.+.++++ ||.+.|.. +.+
T Consensus 358 ~~~g~~l~~~l~~l~~~~~v~~v-rG~Glm~giel~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gvl~~~~g-----~~l 429 (460)
T PRK06916 358 ARKTEYVATQLEDLFALKHVGDI-RQLGLMVGIELVKNKETK-EPFEWTERVGVQVCKRSREL-GMLTRPLG-----NTI 429 (460)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEe-ecCCceeeEEeecccccc-cCCCchhhHHHHHHHHHHHC-CeEEEecC-----CEE
Confidence 44444455555443 222111 223454555553210000 00000001 24577777665 99998731 468
Q ss_pred EEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 440 RISYA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 440 Rls~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|+... .+++++++++++|+++++++.
T Consensus 430 ~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 430 VFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 87744 499999999999999998764
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-15 Score=148.52 Aligned_cols=337 Identities=14% Similarity=0.100 Sum_probs=206.9
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. ++.+.+++.+++.+....... .-..+....+++.+.+..+. .-+.++++++++++++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~~--~~~~v~f~~sGseA~e 119 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFG-GFTHKPAIELCQKLVKMTPN--ALDCVFLADSGSVAVE 119 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccc-ccCCHHHHHHHHHHHhhCCC--CCCEEEEeCCcHHHHH
Confidence 5778999988752 2233 789999999988753211100 00112334455555443321 2368999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CCE-------------EEEecCcCCCCC-----ccCHHhHh
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DAT-------------PVILPTRISENF-----LLDPKVLE 221 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~~-------------~~~v~~~~~~~~-----~~d~~~l~ 221 (470)
.+++.... +| .+|+...-+|++....+... |.. ...++.. ...+ .-|+++++
T Consensus 120 ~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~ 198 (427)
T TIGR00508 120 VALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLA 198 (427)
T ss_pred HHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHH
Confidence 88886431 23 67888899999875433322 211 1111111 0001 01456677
Q ss_pred hhcc---CCceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEE
Q 012124 222 SKLT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLT 295 (470)
Q Consensus 222 ~~l~---~~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 295 (470)
+.+. +++.+|++... +.-.|. ..+.+.+++|.++|++| ++++|.||++.++...+... .....+.+ + |+
T Consensus 199 ~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~Gr~G~~~~~~~~~v~p--D--i~ 273 (427)
T TIGR00508 199 KLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY-DILLIADEIATGFGRTGKLFACEHAGVVP--D--IL 273 (427)
T ss_pred HHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCccchhhhcCCCC--C--EE
Confidence 7764 34556666543 655565 55899999999999999 99999999997754333221 11122222 2 33
Q ss_pred EeccCcccccccc-eeeEEEcCHHHHHHHHHHh-----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 012124 296 VNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 296 i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
+++|.++ .|+ .++.+++++++.+.+.... ...++..+++...++.+.|+.-.. ++ ..+..+++.++
T Consensus 274 --~~gK~l~-gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-~~----~~~~~~~~~~~ 345 (427)
T TIGR00508 274 --CVGKALT-GGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLE-GE----WQKQVSAIENQ 345 (427)
T ss_pred --Eechhhh-cCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHh-CC----HHHHHHHHHHH
Confidence 4899997 885 7899999999988876421 223455688888888888763110 22 33445555555
Q ss_pred HHHHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--
Q 012124 370 LVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-- 444 (470)
Q Consensus 370 l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-- 444 (470)
+.+.|+++ +.+.-.. .-|.++-+.+.+.. ....+.++|+++ ||.+.+.. +.+|++..
T Consensus 346 l~~~L~~l~~~~~i~~vr-g~G~~~~i~~~~~~-----------~~~~~~~~l~~~-Gv~~~~~~-----~~l~~~ppl~ 407 (427)
T TIGR00508 346 LKRELSPLRKNPVVKDVR-VLGAIGVVEMYKPV-----------NVEELQKKFVEQ-GVWIRPFG-----KLIYVMPPYI 407 (427)
T ss_pred HHHHHHHhhcCCCEEeEe-ccccEEEEEECCcc-----------CHHHHHHHHHHC-CeEEEecC-----CEEEEECCCC
Confidence 66666554 1121111 12444555554321 456788888766 99987632 47899877
Q ss_pred cCHHHHHHHHHHHHHHHHh
Q 012124 445 ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~~ 463 (470)
.++++|++++++|++++++
T Consensus 408 ~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 408 ITTEQLQKLTAALIEALHE 426 (427)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4999999999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.8e-15 Score=140.96 Aligned_cols=212 Identities=17% Similarity=0.187 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~ 209 (470)
..|.+.++++- ..++.+.++++..||..++..++++||.|++.+..|.+.... ++..|.++..++.
T Consensus 66 ~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~-- 135 (396)
T COG0626 66 DALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP-- 135 (396)
T ss_pred HHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC--
Confidence 45555555542 457899999999999999999999999999999999887654 4568888877763
Q ss_pred CCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 210 SENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.+.+.+++++. +++++|++.+|.|||-.+.+ +.+|+++|+++ |+++|+|++|..-.+.. + ++
T Consensus 136 -----~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~-g~~vvVDNTfatP~~q~----P---L~- 198 (396)
T COG0626 136 -----GDDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAY-GALVVVDNTFATPVLQR----P---LE- 198 (396)
T ss_pred -----CChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhc-CCEEEEECCcccccccC----h---hh-
Confidence 25566666666 59999999999999999888 99999999999 89999999997532221 1 21
Q ss_pred CCCceEEEeccCccccc-ccceeeEEEcCHH-HHHHHHHHhh-hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAM-TGWRLGYIAGPKH-FVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~-~G~r~G~~~~~~~-~~~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+-.|++.|.+|-++- ..+=.|.++++.+ +.+.+..... ......+++....+..-++ -+.-+.++..+
T Consensus 199 -~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk-------TL~~Rm~~~~~ 270 (396)
T COG0626 199 -LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR-------TLALRMERHNE 270 (396)
T ss_pred -cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc-------hHHHHHHHHHH
Confidence 3566999999999951 2233576776654 4444433333 3566677776544443333 23344455566
Q ss_pred HHHHHHHHhccCCCC
Q 012124 366 RRDFLVKSFGELEGV 380 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~ 380 (470)
+...+.+.|++.|.+
T Consensus 271 nA~~IA~~L~~~p~V 285 (396)
T COG0626 271 NALKIAEFLADHPKV 285 (396)
T ss_pred HHHHHHHHHhcCCCe
Confidence 677777888776655
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-15 Score=144.83 Aligned_cols=210 Identities=11% Similarity=0.137 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 208 (470)
..+|.+.++++. | .+..+++++++.|+.+++.+++++||+|+++.+.|.+.. ..+...|++++.++++
T Consensus 66 ~~~lE~~la~le----g----~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~ 137 (384)
T PRK06434 66 VQAFEEKYAVLE----N----AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTD 137 (384)
T ss_pred HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCC
Confidence 345555555553 3 356788888889999999999999999999988777665 4566789999999986
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
+.+.+.++ .+++++|++.+|.|||+.+.+ +++|+++|+++ + +++|.++..- +.. .++.
T Consensus 138 ~~~~~~l~--------~~~tklv~~e~~snpt~~v~D---i~~I~~la~~~-~--lvVD~t~~s~-~~~---~pl~---- 195 (384)
T PRK06434 138 RLNSLDFD--------PSNYDLIYAESITNPTLKVPD---IKNVSSFCHEN-D--VIVDATFASP-YNQ---NPLD---- 195 (384)
T ss_pred Chhheeec--------CCCeeEEEEEcCCCCCceeec---HHHHHHHHHHc-C--eEEECCCCCc-ccC---Cchh----
Confidence 43332221 136899999999999999887 88999999999 8 3559997431 111 1221
Q ss_pred CCCceEEEeccCccccccc-ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G-~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+-.+++.|.+|.++-+| .=.|.++. ++++.+.+...........+++....+..-| +.+..+.++.+++
T Consensus 196 -~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL-------~tL~~R~~r~~~~ 267 (384)
T PRK06434 196 -LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGL-------KTLGLRMEKHNKN 267 (384)
T ss_pred -cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCC-------CcHHHHHHHHHHH
Confidence 245588999999996333 33577766 5566677665554455555655433322222 2344555555667
Q ss_pred HHHHHHHhccCCCC
Q 012124 367 RDFLVKSFGELEGV 380 (470)
Q Consensus 367 ~~~l~~~L~~~~g~ 380 (470)
...+.+.|+..|.+
T Consensus 268 a~~~a~~L~~~p~v 281 (384)
T PRK06434 268 GMELARFLRDSKKI 281 (384)
T ss_pred HHHHHHHHHcCCCc
Confidence 77777778776655
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-15 Score=147.81 Aligned_cols=355 Identities=13% Similarity=0.048 Sum_probs=212.1
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCC---CCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS---YTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~---~~~~~i~it~g~~~ 165 (470)
+|+.+||+..|.. .+.. ++.+.+++.+++.+-.... ...-..+.+..+++.+....... ...+.+++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~-~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSE 140 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVM-LAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSA 140 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchH
Confidence 6778999988853 2333 7889999999886421111 11111345667777776543211 12358999999999
Q ss_pred HHHHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHc-CC------------EEEEecCcCCC--CCcc-------
Q 012124 166 SILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE--NFLL------- 215 (470)
Q Consensus 166 al~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~~------- 215 (470)
|.+.+++.... +| .+|+...-+|++....+... |. .+..+|..... .++.
T Consensus 141 AvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~ 220 (472)
T PRK08742 141 GVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL 220 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHH
Confidence 99999887521 33 67888899999876443322 11 11222221100 0011
Q ss_pred -CHHhHhhhcc---CCceEEEEcC-CCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCC
Q 012124 216 -DPKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPG 288 (470)
Q Consensus 216 -d~~~l~~~l~---~~~~~i~l~~-p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~ 288 (470)
+++.+++.+. +++.+|++.. .+.-.|. ..+++.++++.++|++| |+++|.||++..|...+.... ....+.+
T Consensus 221 ~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~-gillI~DEV~TGfGRtG~~~a~e~~gv~P 299 (472)
T PRK08742 221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH-GAFLIADEIATGFGRTGTLFACEQAGVMP 299 (472)
T ss_pred HHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccchHHHhcCCCC
Confidence 2466666663 3566676654 3666676 66899999999999999 999999999998744332111 1112222
Q ss_pred CCCceEEEeccCcccccccc-eeeEEEcCHHHHHHHHHH------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~-r~G~~~~~~~~~~~l~~~------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
+ +-+++|.++ .|+ ++|.+++++++.+.+... ....+++.+++...++.+.|+.-.. ++.+++.++
T Consensus 300 D------iv~~gKgl~-gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~-~~l~~~~~~ 371 (472)
T PRK08742 300 D------LLCLSKGLT-GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFAD-DDVIARNQP 371 (472)
T ss_pred C------EEEEccccc-CCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHH-CCHHHHHHH
Confidence 2 445789998 884 999999999998876421 2335677899998888887763110 122222222
Q ss_pred HHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCCCCCCCcEE
Q 012124 362 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTCIR 440 (470)
Q Consensus 362 ~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~pg~~f~~~~~iR 440 (470)
. -++...+.+.+.+.+.+.-. ..-|+++-+.+....... ..+.... -...+.+.++++ ||.+.+. .+.||
T Consensus 372 ~-g~~l~~~~~~~~~~~~i~dv-RG~Gl~~giel~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~vi~ 442 (472)
T PRK08742 372 T-AARMTQLAAQIGEHPHVADV-RQAGMVVAFELTRGGNKR-TPFPPAARVGLHAYRAALAR-GVVLRPL-----GDVLY 442 (472)
T ss_pred H-HHHHHHHHHHHhcCCCeeeE-eccceEEEEEeccCcccc-ccCCchhHHHHHHHHHHHHC-CeEEEec-----CCEEE
Confidence 2 11112233334444322212 234666666664210000 0000000 024566666665 9998763 25799
Q ss_pred EEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 441 ISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 441 ls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.... +++++++++++|+++++++.
T Consensus 443 ~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 443 WMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 98765 99999999999999998754
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-15 Score=147.11 Aligned_cols=358 Identities=15% Similarity=0.094 Sum_probs=205.9
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al 167 (470)
+|+.+||+..|... +.. +|.+.+++.+++.+....+. ..-..+.+..+++.+....+..... ..+++++++++|.
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAv 134 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHT-LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAV 134 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccc-cccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHH
Confidence 67889999988633 333 78899999998875322111 1112466677777776544311011 1345668999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-C------------CEEEEecCcCCC--CCc----cCHHhH----hh
Q 012124 168 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISE--NFL----LDPKVL----ES 222 (470)
Q Consensus 168 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~--~~~----~d~~~l----~~ 222 (470)
+.+++... ...++|+...-+|++....+... | ..+..+|..... .++ -+.+.+ ++
T Consensus 135 e~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (459)
T PRK06931 135 EAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFEN 214 (459)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 99888642 23467888899999887554422 1 112223321100 000 012222 23
Q ss_pred hcc------CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc--cccCCCCCce
Q 012124 223 KLT------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMWERT 293 (470)
Q Consensus 223 ~l~------~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~--~~~~~~~~~~ 293 (470)
.+. +++.+|++...+.-.|. ..+++.++++.++|++| |+++|.||+...|...+. .... ..+.++
T Consensus 215 ~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~LlI~DEV~tGfGRtG~-~~a~~~~gv~PD---- 288 (459)
T PRK06931 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH-GILLIVDEVQAGFARTGK-MFAFEHAGIEPD---- 288 (459)
T ss_pred HHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhcCCcCch-HHHhhhcCCCCC----
Confidence 322 24666766444544565 56899999999999999 999999999998733332 1111 122222
Q ss_pred EEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 294 i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
+-+++|.++ .|+++|.+++.+++ +.+.......+++.++++..++.+.|+.-.. ++.+++..+.=...++.|.+.
T Consensus 289 --ivt~gK~l~-gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~-~~l~~~~~~~G~~l~~~L~~l 363 (459)
T PRK06931 289 --IIVMSKAVG-GGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKE-ENLAQNAAERGEWLKAQLAEL 363 (459)
T ss_pred --EEEeccccc-CCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH
Confidence 455799998 89999998887653 5543333445778899998888888763110 122233222222223333332
Q ss_pred hccCCCCeecCCCceEEEeeeccCccCCc-ccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHH
Q 012124 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 448 (470)
Q Consensus 374 L~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~ 448 (470)
.++.|-+ .....-|+++.+++.+..... ...... ..-...+...++++ ||.+.+...+ .+.+|+.... +++
T Consensus 364 ~~~~~~i-~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gvl~~~~~~~--~~~l~~~Ppl~it~~ 439 (459)
T PRK06931 364 QKRYPCI-GNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFEN-GLLLERGGRN--GNVVRLLPPLLITQA 439 (459)
T ss_pred HHhCCCe-EeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHC-CcEEeecCCC--CCEEEEECCCCcCHH
Confidence 2334322 112234666666763210000 000000 00124566666655 9998774322 4678877664 999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012124 449 TLQAAVERIKKGLLTLR 465 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~~ 465 (470)
++++++++|.++++++.
T Consensus 440 eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 440 ECEEFIDRFEQALLAAV 456 (459)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987653
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-14 Score=159.00 Aligned_cols=348 Identities=11% Similarity=0.075 Sum_probs=210.7
Q ss_pred cCCCeEEccCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
+|+.++|+..|...+.. ++.+.+++.+++.+..... .-..+....+++.+....+ ..-+.+++++++++|.+.+
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA~e~A 696 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT---RYLHDAIVAYAERLTATLP--DGLTVAFFVNSGSEANSLA 696 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC---CcCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHH
Confidence 47789999888655554 7899999999987531111 1123455666666665432 1236899999999999999
Q ss_pred HHHhc--CCCCeEEEcCCCCCChHHHHHH-cC------------CEEEEecCc--CCCCCcc-C-------HHhHhhhcc
Q 012124 171 VLAVC--SPGDEVIIPAPFWVSYPEMARI-AD------------ATPVILPTR--ISENFLL-D-------PKVLESKLT 225 (470)
Q Consensus 171 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g------------~~~~~v~~~--~~~~~~~-d-------~~~l~~~l~ 225 (470)
++... ....+|+..+-+|++....... .+ -.+..++.. ....+.. + .+.+++.+.
T Consensus 697 lklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 776 (1013)
T PRK06148 697 LRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA 776 (1013)
T ss_pred HHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence 88753 1236788888899887643222 11 011111110 0001110 1 133444442
Q ss_pred ------CCceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc--ccCCCCCceEEE
Q 012124 226 ------EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERTLTV 296 (470)
Q Consensus 226 ------~~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~--~~~~~~~~~i~i 296 (470)
+++.+|++...+.-.| ...+++.++++.++|++| |+++|.||++..|...|....... .+.++ |
T Consensus 777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~-g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD------i 849 (1013)
T PRK06148 777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA-GGVCIADEVQVGFGRVGSHWWAFETQGVVPD------I 849 (1013)
T ss_pred hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEecccCCCCCCCcchhhhhcCCCcc------e
Confidence 3466666644444344 567899999999999999 999999999988633332111111 22222 5
Q ss_pred eccCcccccccceeeEEEcCHHHHHHHHHH-hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~-~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
-+++|.+| .|+++|.+++.+++.+.+..- ....+++.++++..++.+.|+.-.. ++ +.+..++.-+++.+.|+
T Consensus 850 vt~gK~lg-gG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~-e~----l~~~~~~~G~~l~~~L~ 923 (1013)
T PRK06148 850 VTMGKPIG-NGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIED-ED----LQRNALEIGNYLLAGLR 923 (1013)
T ss_pred eeeccccc-CCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHHHHH
Confidence 66899998 899999999999998877532 1346777899998888888764111 22 22333333344444443
Q ss_pred c----CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHH
Q 012124 376 E----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 449 (470)
Q Consensus 376 ~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~ 449 (470)
+ .+-+. ....-|+++-+++......... .......+++.++++ ||.+.+...+ .+.+|+.... ++++
T Consensus 924 ~l~~~~~~i~-~VrG~Gl~~gvel~~~~~~~~~---~~~~~~~i~~~~~~~-Gvl~~~~g~~--~~vlr~~Ppl~it~~~ 996 (1013)
T PRK06148 924 ELQDRFDIIG-DVRGMGLFLGIELVTDRKTKAP---ATAIARYVKNGARER-GILIGTEGPH--DNVLKIRPPLIFSRAD 996 (1013)
T ss_pred HHHHhCCCce-EEeeeceEEEEEecCCccccCc---cHHHHHHHHHHHHhC-CeEEeccCCC--CCEEEEeCCccCCHHH
Confidence 3 32121 1123466677776421000000 000134567777765 9999774322 4678887664 9999
Q ss_pred HHHHHHHHHHHHHhh
Q 012124 450 LQAAVERIKKGLLTL 464 (470)
Q Consensus 450 i~~~l~~l~~~l~~~ 464 (470)
+++++++|+++++++
T Consensus 997 id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 997 ADHLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999765
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-15 Score=138.97 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~ 210 (470)
+-+..+...+....| ..+.++.+++..|+..++..|+.+|+.|+..+..|.+...+++ .+|.+...+.++
T Consensus 77 Pt~~~le~~iaal~g----a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~-- 150 (409)
T KOG0053|consen 77 PTRDVLESGIAALEG----AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD-- 150 (409)
T ss_pred CchHHHHHHHHHHhC----CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh--
Confidence 344444444444333 3568999999999999999999999999999999999876654 578887777653
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
|++.+++++++++++|++.+|.||+..+.+ +++|.++|+++ |++||+|+.+....+. .... .
T Consensus 151 -----~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~-g~~vvVDnTf~~p~~~-----~pL~----l 212 (409)
T KOG0053|consen 151 -----DLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKY-GFLVVVDNTFGSPYNQ-----DPLP----L 212 (409)
T ss_pred -----hHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhC-CCEEEEeCCcCccccc-----Chhh----c
Confidence 788899999999999999999999999999 88889999999 9999999999763221 1111 2
Q ss_pred CceEEEeccCcccc-cccceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHH
Q 012124 291 ERTLTVNGFSKAFA-MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKA 341 (470)
Q Consensus 291 ~~~i~i~S~sK~~~-~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a 341 (470)
+-.|++.|.+|.++ -..+=.|.++.. .++.+++...+....++.+++....
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~l 265 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFL 265 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45599999999995 223445778875 8899999998888888888876443
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-14 Score=147.49 Aligned_cols=341 Identities=13% Similarity=0.089 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-----CcEEEecChHHHHHHHHHHhcC--------
Q 012124 110 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-----DQILVSNGAKQSILQAVLAVCS-------- 176 (470)
Q Consensus 110 ~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-----~~i~it~g~~~al~~~~~~l~~-------- 176 (470)
..+-+.+...+......|...+...++.+.+.+|+.+.+|.+-.. ..-++|+|++++...++.+..+
T Consensus 97 ~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~ 176 (490)
T PLN02880 97 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK 176 (490)
T ss_pred HHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc
Confidence 334455555555445556566778899999999999999975321 2367789988887666654321
Q ss_pred ---CCCeEEEcCCCCCChHHHHHHcCCE---EEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcCCCCCcccCC
Q 012124 177 ---PGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVY 244 (470)
Q Consensus 177 ---~gd~Vlv~~p~y~~~~~~~~~~g~~---~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~p~nPtG~~~ 244 (470)
+.-.|++.+-+|.+....+..+|+. ++.||++.++++.+|++.|++++.+. +-+|+-+....+||.+.
T Consensus 177 ~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred cccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 1124567888899999999999984 78899876566789999999999532 33444466688999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc-cCCCCCceEEEeccCcccccccceeeEEEcCH--HHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVA 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~--~~~~ 321 (470)
| +++|+++|++| |+|+++|.+|+.+.... +.+.. +.+...-.-+..+++|.+. ....+|+++.+. .+.+
T Consensus 257 p---l~eI~~i~~~~-~iwlHVDaA~gg~~~~~---~~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~ 328 (490)
T PLN02880 257 P---LLELGKIAKSN-GMWFHVDAAYAGSACIC---PEYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQ 328 (490)
T ss_pred c---HHHHHHHHHHc-CCEEEEehhhHHHHHhC---HHHHHHhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHHHH
Confidence 9 88999999999 99999999999754321 11111 1211123467788999995 778899988763 2222
Q ss_pred HHHHHhhhcc--------------C---CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 322 ACNKIQSQFT--------------S---GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 322 ~l~~~~~~~~--------------~---~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
.+..-..+.. + +...+....+-..|+. ++.+.++++.+...+..+++.+.+++.+++++..
T Consensus 329 ~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~--~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~ 406 (490)
T PLN02880 329 SLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRL--YGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT 406 (490)
T ss_pred HHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 2211110000 0 1111111111112322 1355566666666688888999998888888765
Q ss_pred C-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHH
Q 012124 385 P-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~ 460 (470)
| ..++ +.++++..... .+.. ..-..++.++|.+++.+.+.+ ..+....++|+++.. ++++++.+++.|.++
T Consensus 407 ~~~~~i-v~Fr~~~~~~~-~~~~--~~~n~~l~~~l~~~g~~~v~~-t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~ 481 (490)
T PLN02880 407 PRIFSL-VCFRLVPPKNN-EDNG--NKLNHDLLDAVNSSGKIFISH-TVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDE 481 (490)
T ss_pred CCceEE-EEEEEeCCCCC-hhhH--HHHHHHHHHHHHhCCCEEEEE-EEECCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5 4455 55676532000 0000 001135666676666666654 334445689999876 679999999999888
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
.+++.
T Consensus 482 ~~~~~ 486 (490)
T PLN02880 482 ASKLL 486 (490)
T ss_pred HHHHH
Confidence 77654
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-14 Score=124.37 Aligned_cols=299 Identities=16% Similarity=0.198 Sum_probs=202.1
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 212 (470)
+..+.+.+++|+ | -|.+-+|+|+.++=+.++.+++++||.|+++.-++....-+++.+|+++..||-.....
T Consensus 63 I~~F~~dlaeFl----g----~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pe 134 (382)
T COG1103 63 IKDFLEDLAEFL----G----MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPE 134 (382)
T ss_pred HHHHHHHHHHHh----C----CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCc
Confidence 456667788876 3 36789999999999999999999999999999998888888999999999999766667
Q ss_pred CccCHHhHhhhccC-------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 213 FLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 213 ~~~d~~~l~~~l~~-------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+.+++|...+.+.+ .+.+.+++.+..--|...+ .++++++|+++ +++++...+|.- +..+.+...
T Consensus 135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~-gvPlllN~AYt~----Grmpvs~ke 206 (382)
T COG1103 135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREY-GVPLLLNCAYTV----GRMPVSGKE 206 (382)
T ss_pred eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHc-CCceEeecceee----ccccccccc
Confidence 88999887776632 3667778888766777666 88999999999 999999999986 444455554
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh-c------cCCCChHHHHHHHHHHhcCCCChHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ-F------TSGASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-~------~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
+ +..++++|-+|+++ +.-++|.+....++.+.+.+.... + -.++..-+. -...++.+ -.++.+
T Consensus 207 ~----g~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGa-pivTlmAS----fP~V~e 276 (382)
T COG1103 207 I----GADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGA-PIVTLMAS----FPHVVE 276 (382)
T ss_pred c----CCCEEEecCccchh-ccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCc-hHHHHHhc----CHHHHH
Confidence 4 34489999999997 666899999999998877554311 1 011111111 11122222 122222
Q ss_pred HHHH---HHHHHHHHHHHhccCCCCeec--CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 359 MVKA---FRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 359 ~~~~---~~~~~~~l~~~L~~~~g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
..++ --++.+++.+.|+++.|+.-. .|..--.+.+..|......... ....-.+.+.|.++.-+-+.||
T Consensus 277 RVkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~---~r~gyFlY~ELK~RgI~GI~~G--- 350 (382)
T COG1103 277 RVKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKH---KRKGYFLYEELKKRGIHGIQPG--- 350 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhC---cCCceeeHHHHHhcCccccccC---
Confidence 2222 223556778888887555432 2322222444544321000000 0022345667776633345554
Q ss_pred CCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 434 GDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 434 ~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
...+|.+|+-. +.|+++..++.++++++++
T Consensus 351 -~Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 351 -QTKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred -ceeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 35789999877 9999999999999999875
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=144.17 Aligned_cols=342 Identities=10% Similarity=0.082 Sum_probs=196.5
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHH--HHHHHHHcCCCCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAE--AGINAIREGFTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~--a~~~~~~~~~~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.++|+..|.. .+.. +|.+.+ ++.+++.+-.... ....-..+....+++.+.+..+ +-..+.+++++++++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~-p~~~~~v~f~~SGsE 121 (443)
T PRK08297 43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLG-DPELPHLFFVDGGAL 121 (443)
T ss_pred CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcC-CCCCCEEEEeCchHH
Confidence 4677899988753 3333 678888 8888876421100 0001112344445555544321 113469999999999
Q ss_pred HHHHHHHHhc--------CC------CCeEEEcCCCCCChHHHHHHc-CCEEE-----------EecCcCC----CCCc-
Q 012124 166 SILQAVLAVC--------SP------GDEVIIPAPFWVSYPEMARIA-DATPV-----------ILPTRIS----ENFL- 214 (470)
Q Consensus 166 al~~~~~~l~--------~~------gd~Vlv~~p~y~~~~~~~~~~-g~~~~-----------~v~~~~~----~~~~- 214 (470)
|++.+++... .. ..+|+...-+|++....+... |.... .++.... .+..
T Consensus 122 Ave~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK08297 122 AVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL 201 (443)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence 9999998752 11 257998999999876544332 21100 0110000 0000
Q ss_pred --------cCHHhHhhhcc---CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-
Q 012124 215 --------LDPKVLESKLT---EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT- 281 (470)
Q Consensus 215 --------~d~~~l~~~l~---~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~- 281 (470)
-+++.+++.+. +++.+|++...+...|. ..|++.+++|.++|++| |+++|.||++..|...+....
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~a~ 280 (443)
T PRK08297 202 EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEH-DALLIFDEVQTGVGLTGTAWAY 280 (443)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCccchHHHH
Confidence 02345556663 46677777544544564 57899999999999999 999999999988643332100
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH-----HhhhccCCCChHHHHHHHHHHhcCCCChHHH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVV 356 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 356 (470)
....+.+ | +-+|+|.++ +|.+++..++.+.... .....+++.++++..++.+.|+.-.. ++.+
T Consensus 281 ~~~gv~P--D----iv~~gK~l~-----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~ 348 (443)
T PRK08297 281 QQLGVRP--D----IVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEE-DGLV 348 (443)
T ss_pred HhcCCCC--C----EEEeccccc-----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHh-cCHH
Confidence 0112222 1 335899974 2333344443222111 12345677889998888888763111 2223
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012124 357 SKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 435 (470)
Q Consensus 357 ~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~ 435 (470)
++..+.-+..++.+.+...+.+.+. .... .|+++.+.+++.. ....+++.|+++ ||.+.|+.
T Consensus 349 ~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg-~G~~~~i~~~~~~-----------~~~~~~~~l~~~-Gvl~~~~~---- 411 (443)
T PRK08297 349 ENAARQGEYLLARLEELAAEFPAVVSNVRG-RGLMCAFDLPTTA-----------DRDEVIRRLWEE-GVLVLPCG---- 411 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcceeeec-cceEEEEEecCHH-----------HHHHHHHHHHHC-CEEEecCC----
Confidence 3333333333333333333344332 2223 3666777875421 345778887755 99998753
Q ss_pred CCcEEEEe--ecCHHHHHHHHHHHHHHHHhh
Q 012124 436 DTCIRISY--AASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 436 ~~~iRls~--~~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+.+|++. ..+++++++++++|.++++++
T Consensus 412 ~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 412 ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 24688854 459999999999999998765
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-14 Score=154.56 Aligned_cols=349 Identities=14% Similarity=0.103 Sum_probs=207.1
Q ss_pred cCCCeEEccCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
+|+.++|+..|...+.. ++.+.+++.+++....... ....+....+++.+.+... -..+.+++++++++|.+.+
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~elae~L~~~~p--~~~~~v~f~~SGsEA~e~A 657 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNS---RFHYAAVAEFSERLAALAP--DGLDTVFLVNSGSEANDLA 657 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhccccc---cccCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHH
Confidence 57789999988755553 7899999999887532211 1122455666666665432 1236899999999999999
Q ss_pred HHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------EEEEecCcC--CCCCc-cC-----HHhHhhhcc-
Q 012124 171 VLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRI--SENFL-LD-----PKVLESKLT- 225 (470)
Q Consensus 171 ~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~--~~~~~-~d-----~~~l~~~l~- 225 (470)
++... .....|+..+-+|++........ +. .+..++... ...|. .+ .+.+++.++
T Consensus 658 lklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 658 IRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 98431 22356788888888755332111 10 112222211 00111 11 233333331
Q ss_pred -----CCceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc
Q 012124 226 -----EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299 (470)
Q Consensus 226 -----~~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 299 (470)
+++.+|++... ++-.....+++.+++|.++|++| |+++|.||++..|...|.....+..+.- ... |-+|
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~-g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PD---ivt~ 812 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR-GGVCIADEVQVGYGRLGHYFWGFEQQGV-VPD---IITM 812 (972)
T ss_pred HhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEEeehhcCCccCccchhhhhcCC-CCC---EEEe
Confidence 24556666444 44444677899999999999999 9999999999775333321111111111 111 3378
Q ss_pred CcccccccceeeEEEcCHHHHHHHHHH-hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--
Q 012124 300 SKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 376 (470)
Q Consensus 300 sK~~~~~G~r~G~~~~~~~~~~~l~~~-~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 376 (470)
+|.+| .|+.+|++++.+++.+.+... ....+++.++++..++.+.|+.-.. + ++.+..++.-+++.+.|++
T Consensus 813 gK~lg-~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~-e----~l~~~~~~~G~~l~~~L~~l~ 886 (972)
T PRK06149 813 AKGMG-NGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE-E----KLQENARRVGDHLKARLEALA 886 (972)
T ss_pred ccccc-CCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHh-c----CHHHHHHHHHHHHHHHHHHHH
Confidence 99998 899999999999998877631 1123467889998888888864111 1 2333333333444444433
Q ss_pred --CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHH
Q 012124 377 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQA 452 (470)
Q Consensus 377 --~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~ 452 (470)
.+-+... ..-|+++-+++......... .......+++.|+++ ||.+.+.... .+.+|+... .+++++++
T Consensus 887 ~~~~~i~~v-rG~Gl~~gvel~~~~~~~~~---~~~~~~~i~~~l~~~-Gvl~~~~g~~--~~vl~~~Ppl~it~~~id~ 959 (972)
T PRK06149 887 DRHPLIGAV-HGMGLYLGVELVRDRQTLEP---ATEETAAICDRLLEL-GVIMQPTGDH--LNILKIKPPLCLDRESADF 959 (972)
T ss_pred HhCCCeEEE-eecceEEEEEEecCcccCCC---ChHHHHHHHHHHHhC-CeEEeecCCC--CCEEEEECCCcCCHHHHHH
Confidence 3222222 23466677776321000000 000235677777765 9999874221 367888766 49999999
Q ss_pred HHHHHHHHHHh
Q 012124 453 AVERIKKGLLT 463 (470)
Q Consensus 453 ~l~~l~~~l~~ 463 (470)
++++|.+++++
T Consensus 960 ~~~~l~~~l~~ 970 (972)
T PRK06149 960 FVDMLDRVLTE 970 (972)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=142.03 Aligned_cols=314 Identities=13% Similarity=0.062 Sum_probs=189.6
Q ss_pred ChHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEe-cChHHHHHHHHHHhcCCCCeEEEc
Q 012124 108 TPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS-NGAKQSILQAVLAVCSPGDEVIIP 184 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it-~g~~~al~~~~~~l~~~gd~Vlv~ 184 (470)
.|+.+.+++...-.. ...++.+ -..++-+.+.+.+.+.++.+ +..+|+++ ++++.+++.++..++.+ +.+++.
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~~--~f~~~~~~~r~~l~~l~~~~-~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~ 89 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQA--PVKNLVGRVREGLAELFSLP-DGYEVILGNGGATAFWDAATFGLIEK-KSLHLS 89 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCCh--HHHHHHHHHHHHHHHHhCCC-CCceEEEECCchhHHHHHHHHhcccc-cccEEe
Confidence 367777776532100 0112211 22344344444444445532 33478876 55999999999998743 333333
Q ss_pred CCCCCC-hHHHHHH--cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 APFWVS-YPEMARI--ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ~p~y~~-~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
.-.|.. +.+.+.. ++.++..++.+. +. .++..+++++++|.+++..|.||...| +++| ++++ |
T Consensus 90 ~G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~lV~~~h~et~tG~~~p---i~~I---~~~~-g 155 (361)
T TIGR01366 90 FGEFSSKFAKAVKLAPWLGEPIIVTADP--GS-----APEPQADPGVDVIAWAHNETSTGVAVP---VRRP---EGSD-D 155 (361)
T ss_pred cCHHHHHHHHHHHhhhccCCceEEecCC--CC-----CCCCccCCCCCEEEEcccCCccceecc---cccc---cccC-C
Confidence 333332 2334443 223566666532 21 222345678999999999999999999 4444 4788 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-------------
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------- 328 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------------- 328 (470)
+++|+|.+.+. +.....+.. -.+++.|-.|.+|.+| .++++++++++++++.....
T Consensus 156 ~~~iVDavqs~----g~~~idv~~------~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~ 224 (361)
T TIGR01366 156 ALVVIDATSGA----GGLPVDIAE------TDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRWVPEFLSLPT 224 (361)
T ss_pred CeEEEEcCccc----cCCCCCHHH------CCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCCCchhhhHHH
Confidence 99999999875 222233332 2478899999998664 26666778877766542110
Q ss_pred -------hccCCCChHH-HHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCC-C---ceEEEeeec
Q 012124 329 -------QFTSGASSIS-QKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP-Q---GAFYLFIDF 395 (470)
Q Consensus 329 -------~~~~~~~~~~-q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~---~g~~~~~~~ 395 (470)
..+.+++.+. ..++..+++.-. +. .++.+.+++++..+++.+.|.++++++.... . +.....+.+
T Consensus 225 ~~~~~~~~~t~~tp~i~~i~~l~~al~~l~--~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~ 302 (361)
T TIGR01366 225 AVDNSLKNQTYNTPAIATLALLAEQIDWMN--GNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF 302 (361)
T ss_pred HHhccccCCCCCCchHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC
Confidence 0112233333 224444444310 12 2567778888999999999998855544321 1 112122344
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++.+ +..++.+.|.++ ||.+.+|...-..+.+|+|+.. +.++++.+++.|+++++++
T Consensus 303 ~~g~-----------~~~~v~~~L~~~-gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 303 VDDI-----------DAATVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred CCcc-----------CHHHHHHHHHHC-CCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 4433 778888888655 9999876422235689999987 8999999999999988753
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-15 Score=147.76 Aligned_cols=331 Identities=15% Similarity=0.168 Sum_probs=187.6
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+... +.. ..+.+-.+++.+.+..+ ..+.+++++++++|.+
T Consensus 46 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~---~~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e 118 (431)
T PRK06209 46 DGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN-FTR---PSAIELDAAESFLELID---GADMVKFCKNGSDATS 118 (431)
T ss_pred CCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcC-CCC---CCHHHHHHHHHHHHhCC---ccceEEEecCHHHHHH
Confidence 67789999988633 333 78999999999886432 321 12333345555544332 2368999999999999
Q ss_pred HHHHHhc-CCC-CeEEEc-CCCCCChHHHHH-----HcCC------EEEEecCcCCCCCccCHHhHhhhccC---CceEE
Q 012124 169 QAVLAVC-SPG-DEVIIP-APFWVSYPEMAR-----IADA------TPVILPTRISENFLLDPKVLESKLTE---KSRLL 231 (470)
Q Consensus 169 ~~~~~l~-~~g-d~Vlv~-~p~y~~~~~~~~-----~~g~------~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i 231 (470)
.+++... -.| ..|+.. .-+|++...... ..|. .+..++ . -|++.+++.++. ++.+|
T Consensus 119 ~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~---~d~~~l~~~l~~~~~~~aav 191 (431)
T PRK06209 119 AAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR----Y---NDIASLEALFEDHPGRIACV 191 (431)
T ss_pred HHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC----C---CCHHHHHHHHHhCCCCEEEE
Confidence 9988642 123 345443 334433111100 0111 011111 1 278889888842 45555
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceee
Q 012124 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 232 ~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
++... .|...+.+.+++|.++|++| |+++|.||++..+...+........+.++ +.+|+|.+| .|+.+|
T Consensus 192 i~Epv---~g~~~~~~~l~~l~~lc~~~-g~lLI~DEv~tG~~~~~~g~~~~~gv~PD------i~t~gK~lg-gG~p~~ 260 (431)
T PRK06209 192 ILEPA---TADEPQDGFLHEVRRLCHEN-GALFILDEMITGFRWHMRGAQKLYGIVPD------LSCFGKALG-NGFAVS 260 (431)
T ss_pred EEccc---cCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccCCcCcchhhHHhCCCcc------eeeehhhhc-CCcccE
Confidence 55332 23477899999999999999 99999999987764321111111122221 577899998 889999
Q ss_pred EEEcCHHHHHH--HHHH---h---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-
Q 012124 312 YIAGPKHFVAA--CNKI---Q---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM- 382 (470)
Q Consensus 312 ~~~~~~~~~~~--l~~~---~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~- 382 (470)
++++++++++. +... . ...+++++++...++.+.|+.-.. +..++++++.-+..++.+.+...++ ++..
T Consensus 261 av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~L~~~~~~~-~~~~~ 338 (431)
T PRK06209 261 ALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD-EDVIERLHEQGAKLAAGVNEAAAEH-GLQDH 338 (431)
T ss_pred EEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHhC-CCCeE
Confidence 99999988876 3111 1 233555677777777776653211 2233333333333333333333334 3321
Q ss_pred cCCCceEEEeeecc-CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFS-TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 383 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
....+.+....-+. ...+. .. ..-...+.++++++ ||.+.| ++++..+++++|++++++|.+++
T Consensus 339 vr~~G~~~~~~~~~~~~~~~-~~----~~~~~~~~~~l~~~-Gi~~p~---------l~is~~ht~~dId~~l~~l~~~l 403 (431)
T PRK06209 339 VRVSGRPCCLTYSTLDGNGQ-PS----QAFRTLFLQETIRR-GVLMPS---------LVVSYAHGDADIERTIDAVHGAL 403 (431)
T ss_pred EEeecceEEEEEecCCcccC-Cc----HHHHHHHHHHHHHC-Cccccc---------ccccccCCHHHHHHHHHHHHHHH
Confidence 11112221111111 10000 00 00122566777665 887632 57776679999999999999998
Q ss_pred Hhh
Q 012124 462 LTL 464 (470)
Q Consensus 462 ~~~ 464 (470)
+++
T Consensus 404 ~~~ 406 (431)
T PRK06209 404 GVY 406 (431)
T ss_pred HHH
Confidence 775
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-14 Score=142.94 Aligned_cols=343 Identities=13% Similarity=0.079 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-----CCcEEEecChHHHHHHHHHHhcC--------
Q 012124 110 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-------- 176 (470)
Q Consensus 110 ~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-----~~~i~it~g~~~al~~~~~~l~~-------- 176 (470)
..+-+.+...+......|...++..++.+.+.+|+.+.+|.+-. ...=++|+|++++...++.+...
T Consensus 145 ~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~ 224 (539)
T PLN02590 145 GFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGK 224 (539)
T ss_pred HHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcc
Confidence 34455556666555667777888899999999999999997632 12356788888887666554311
Q ss_pred ---CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcCCCCCcccCC
Q 012124 177 ---PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVY 244 (470)
Q Consensus 177 ---~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~p~nPtG~~~ 244 (470)
|.-.|++.+.+|.+....++.+|+ +++.||++.++++.+|++.|+++|.+. +-+|+-+...-.||.+=
T Consensus 225 ~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 225 TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred cCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC
Confidence 112555678889899999999998 588999876566789999999999542 33444455677899988
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcccccccceeeEEEcCH--HHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVA 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~--~~~~ 321 (470)
| +++|+++|++| ++|+.+|.+|+.+..-.... ..+..+. .-.=+...++|.+. ....+|.++... .+.+
T Consensus 305 p---l~~Ia~i~~~~-g~WlHVDaA~GG~al~~~~~r~~~~Gie---~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~ 376 (539)
T PLN02590 305 P---LVPLGNIAKKY-GIWLHVDAAYAGNACICPEYRKFIDGIE---NADSFNMNAHKWLF-ANQTCSPLWVKDRYSLID 376 (539)
T ss_pred C---HHHHHHHHHHh-CCeEEEecchhhhhhcChhhHHHhcCCc---cCCEEEECchhhcC-cCcCEEEEEecCHHHHHH
Confidence 8 89999999999 99999999999854321111 1111121 11234557899985 668889877654 2333
Q ss_pred HHHHHhhhc-----------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 322 ACNKIQSQF-----------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 322 ~l~~~~~~~-----------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
.+..-..+. ..+.-.+....+-..|+. ++.+.++++.+..-+..+++.+.+++.+++++..
T Consensus 377 a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~--~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~ 454 (539)
T PLN02590 377 ALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRL--YGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVT 454 (539)
T ss_pred HhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Confidence 332111101 111122222222223332 1356677888888889999999999988898765
Q ss_pred C-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHH
Q 012124 385 P-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~ 460 (470)
+ .-+. +.+++......+. . ......++.++|.+...+.+.+ .......+||+++.. ++++++.+++.|.+.
T Consensus 455 ~~~l~i-VcFr~~~~~~~~~-~--~~~ln~~l~~~l~~~G~~~vs~-t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~ 529 (539)
T PLN02590 455 TRYFSL-VCFRLAPVDGDED-Q--CNERNRELLAAVNSTGKIFISH-TALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKH 529 (539)
T ss_pred CCceEE-EEEEecCCCCCHH-H--HHHHHHHHHHHHHhCCCEEEEe-eEECCEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4 4444 4555432100000 0 0001246666666664455544 333334589999875 789999999999998
Q ss_pred HHhhCCC
Q 012124 461 LLTLRPG 467 (470)
Q Consensus 461 l~~~~~~ 467 (470)
.+++.+.
T Consensus 530 a~~~~~~ 536 (539)
T PLN02590 530 ASKFTRN 536 (539)
T ss_pred HHHhccc
Confidence 8877653
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-13 Score=136.06 Aligned_cols=312 Identities=19% Similarity=0.185 Sum_probs=188.1
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCCC---cC--cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeE
Q 012124 108 TPVLIAEAGINAIREGF-TRYTPN---AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~-~~y~~~---~g--~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~V 181 (470)
.++.+++++.+.+.... ..|.-. .| +..+++.+++++ |. +..+++++++.++.+++.. +.+||+|
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~----ga----e~alvv~sg~aAi~l~l~~-l~~GdeV 163 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT----GA----EDALVVNNNAAAVLLALNT-LAKGKEV 163 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHH-hCCcCEE
Confidence 47889999988876421 122111 11 245666666664 32 3456677788889888855 5899999
Q ss_pred EEcCCCCC---C---hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc--c--cCCCHHHHHH
Q 012124 182 IIPAPFWV---S---YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT--G--SVYPKNLLDE 251 (470)
Q Consensus 182 lv~~p~y~---~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt--G--~~~s~~~~~~ 251 (470)
++.+..|. + +...++..|++++.++.+. ..+++++++++++++++|++.+++|++ | ...+ +++
T Consensus 164 Ivs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---l~~ 236 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---IAE 236 (454)
T ss_pred EECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---HHH
Confidence 99886642 2 2345677899999998642 148899999999999999999999985 6 3667 889
Q ss_pred HHHHHHhCCCEEEEEeccccccc----cCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~----~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
|+++|++| |+++|+|...+.+. |+-...+.+..... .+-.+++.|.+|.++-| ..|++++.+++++.++...
T Consensus 237 I~~la~~~-g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~-~GaDiv~fSg~K~LgGp--~~G~i~g~~~~i~~l~~~~ 312 (454)
T TIGR00474 237 LVALGREH-GLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIA-AGVDLVTFSGDKLLGGP--QAGIIVGKKELIERLKKNP 312 (454)
T ss_pred HHHHHHHc-CCeEEEECCCcccccchhccCCCCcccccHhH-cCCCEEEecCccccCCC--eEEEEEECHHHHHhhhhch
Confidence 99999999 99999998644321 11001122222211 34569999999998524 4899999998887654322
Q ss_pred hhccCCCChHHHHHHHHHH----hcCCC-----ChHHHHHHHHHHHHHHHHHHHHhccC--CCC--eecCCC----c---
Q 012124 328 SQFTSGASSISQKAGVAAL----GLGYA-----GGEVVSKMVKAFRERRDFLVKSFGEL--EGV--KMSEPQ----G--- 387 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l----~~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~--~~~~~~----~--- 387 (470)
-.-..-.......++.+.+ +.... .-+.+....+..+++.+.+.+.|++. +++ ++.... +
T Consensus 313 l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~ 392 (454)
T TIGR00474 313 LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSL 392 (454)
T ss_pred hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCC
Confidence 1111112222222222222 21000 00112223345556677777777663 443 232211 1
Q ss_pred ------eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCC--EEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHH
Q 012124 388 ------AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ--VALVPGDAFGDDTCIRISYAA-SLTTLQAAVERI 457 (470)
Q Consensus 388 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g--I~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l 457 (470)
.+-+.++.... +..++.++|. +.. |..+ -.++.+.|.+.+ .+++++..+++|
T Consensus 393 p~~~l~~~~v~~~~~~~------------~~~~l~~~lr-~~~~~ii~r-----~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 393 PDERLPSYAVTLTPDGL------------SAEKLEARLR-ELPPPIIGR-----IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred cCCCCCeEEEEEecCCC------------CHHHHHHHHh-cCCCCEEEE-----EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 23233332211 6778888775 434 3332 135778888887 778888777765
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=139.29 Aligned_cols=327 Identities=17% Similarity=0.151 Sum_probs=190.4
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC-CC------CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG-FT------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQ 165 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~------~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~ 165 (470)
.|+|-..++- +++.+.+++...+.+. .. .|+...-..++.+...++..+.||. ++++..+ ..+++.
T Consensus 22 ~l~LiaSEN~--~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~--~~~~w~anvqp~SGs~ 97 (399)
T PF00464_consen 22 TLNLIASENY--MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGA--EPKEWYANVQPHSGSQ 97 (399)
T ss_dssp SEE-CTT-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE---SSHHH
T ss_pred CccccCcccc--cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCC--CcccceEEeecCCchH
Confidence 3777666554 3566666666555442 11 2322333456666667777788885 4333322 356677
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHH-----HH-----HHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEc
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPE-----MA-----RIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILC 234 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~-----~~-----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~ 234 (470)
|...++.+|++|||+|+..++...++.. .. .....+.+.++++++ ...+|.|.+++.+. .++++|++.
T Consensus 98 An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G 176 (399)
T PF00464_consen 98 ANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKPKLIICG 176 (399)
T ss_dssp HHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--SEEEEE
T ss_pred HHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCCCEEEEC
Confidence 8888999999999999988776655431 11 334578889999864 46799999999885 489999876
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
.-.+|- .++ ++++.++|++. |.+|+.|-++.. +.-++.-+.|+ .. -.|+.+|..|+| +|-|-|.+
T Consensus 177 ~S~y~~--~~d---~~~~reIad~v-ga~l~~D~sH~~GLIa~g~~~~P~-~~-----ADvvt~sThKtl--~GPrggiI 242 (399)
T PF00464_consen 177 ASSYPR--PID---FKRFREIADEV-GAYLMADISHIAGLIAGGLFPNPF-PY-----ADVVTGSTHKTL--RGPRGGII 242 (399)
T ss_dssp -SSTSS--------HHHHHHHHHHT-T-EEEEE-TTTHHHHHTTSS--GC-CT-----SSEEEEESSGGG---SSS-EEE
T ss_pred chhccC--ccC---HHHHHHHHHhc-CcEEEecccccccceehheecCcc-cc-----ceEEEeeccccc--cccCceEE
Confidence 555542 344 77888889999 999999999764 33333322333 22 238899999997 88899999
Q ss_pred EcC--------------HHHHHHHHHHhhhccCCCChHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 314 AGP--------------KHFVAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 314 ~~~--------------~~~~~~l~~~~~~~~~~~~~~~q~a~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
+.. .++.+++.+...+...+.+.....++ +.++... .....++..++.-++.+.|.+.|.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea--~~~~fk~Ya~qVv~NAk~La~~L~~~- 319 (399)
T PF00464_consen 243 LTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA--LSPEFKEYAKQVVKNAKALAEALQER- 319 (399)
T ss_dssp EES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 999 78999998766554433333333333 2333321 12334566667778888899999887
Q ss_pred CCeecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC----CCC-CCCCCcEEEEeec------C
Q 012124 379 GVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP----GDA-FGDDTCIRISYAA------S 446 (470)
Q Consensus 379 g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p----g~~-f~~~~~iRls~~~------~ 446 (470)
|+++... ..+..+|+++... + .+..+. +..+++.||.+.. +.. ...+..|||+... .
T Consensus 320 G~~v~~ggTd~H~vlvd~~~~-~---------~~g~~a-~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~ 388 (399)
T PF00464_consen 320 GFKVVTGGTDNHQVLVDLRSF-G---------IDGKEA-EKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMK 388 (399)
T ss_dssp T-EEGGGS-SSSEEEEEGGGG-T---------S-HHHH-HHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--
T ss_pred CcEEEECCCCCCeEEEEeccc-c---------cchHHH-HHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCC
Confidence 8887642 2345688898542 0 144444 4456788998853 321 0123589999753 5
Q ss_pred HHHHHHHHH
Q 012124 447 LTTLQAAVE 455 (470)
Q Consensus 447 ~~~i~~~l~ 455 (470)
+++|++..+
T Consensus 389 e~dm~~iA~ 397 (399)
T PF00464_consen 389 EEDMKEIAE 397 (399)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 667666543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-13 Score=122.71 Aligned_cols=319 Identities=16% Similarity=0.147 Sum_probs=217.1
Q ss_pred HHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCCh--H
Q 012124 115 AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--P 192 (470)
Q Consensus 115 a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--~ 192 (470)
++.++...+..+|. .+....+-+.+-+-++.-|.. .++.-.++...++.+++.++-.++.|||.|++..-+-++. .
T Consensus 31 ~V~~A~~~~~lgh~-sPe~~qIm~~v~egikyVFkT-~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~ 108 (385)
T KOG2862|consen 31 RVQEAMSRPSLGHM-SPEFVQIMDEVLEGIKYVFKT-ANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAA 108 (385)
T ss_pred HHHHhhcCCccccC-CHHHHHHHHHHHHHHHHHhcc-CCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHH
Confidence 34444444556663 334444444444444333332 2344567777788899999999999999999877665553 4
Q ss_pred HHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc
Q 012124 193 EMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271 (470)
Q Consensus 193 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~ 271 (470)
+..+..|+++..++.+. +....++.+.+.+. .+++++++++....||+.-+. +..+-++|++| +.++++|.+-+
T Consensus 109 D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~-~~lllVD~VaS 183 (385)
T KOG2862|consen 109 DCARRYGAEVDVVEADI--GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL--LAISGELCHKH-EALLLVDTVAS 183 (385)
T ss_pred HHHHhhCceeeEEecCc--ccCccHHHHHHHHHhcCCceEEEEecCccccccchH--HHHHHHHhhcC-CeEEEEechhh
Confidence 67899999999998764 45589999999884 589999999998899998772 34456788899 99999999877
Q ss_pred ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-----------------------
Q 012124 272 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS----------------------- 328 (470)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~----------------------- 328 (470)
-. + .+ ..+|+ ++..+....--|.++.| -.++.+...+...++++..+.
T Consensus 184 lg---g---t~-F~mDe-wgVDvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~ 254 (385)
T KOG2862|consen 184 LG---G---TE-FEMDE-WGVDVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPR 254 (385)
T ss_pred cC---C---cc-ceehh-hcccEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCccc
Confidence 41 1 12 22454 34444444446999743 346668888877777754432
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC----CCceEEEeeeccCccCCccc
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFSTYYGSEAE 404 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~----~~~g~~~~~~~~~~~~~~~~ 404 (470)
.+...+|....+.+.++|..- .++.+++..++.++..+++...|+++ |++... +.....-.+..|..+
T Consensus 255 ~yhhT~pv~lly~Lr~AL~~I--~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv----- 326 (385)
T KOG2862|consen 255 AYHHTPPVQLLYSLRAALALI--AEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV----- 326 (385)
T ss_pred ccccCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCCC-----
Confidence 112235555566666666642 36788999999999999999999987 664321 111222345666654
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012124 405 GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 405 ~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
|-.+++.++..+++|.+.-|-.-..+..+||.+.. +.+.|+..++.|+..+.+
T Consensus 327 ------Dw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 327 ------DWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ------CHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 88899999988877776554433346789999765 678899999888877654
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-13 Score=125.87 Aligned_cols=336 Identities=15% Similarity=0.114 Sum_probs=216.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
..|.|=..++- .++.+.+++-..+.+. ...|+--.-..++.+...++..+.||. +--|+-..+|++ |.
T Consensus 27 ~~ieLIASEN~--~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga--~~anVQPhSGs~-AN 101 (413)
T COG0112 27 EHIELIASENF--TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGA--EYANVQPHSGSQ-AN 101 (413)
T ss_pred hceeeeecccc--CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCC--CccccCCCCchH-HH
Confidence 44666554443 4678888888877652 233444444556666667888888885 445677777776 45
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHH---HHHcC--CEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.+|++|||+|+-.+-.+.++... +...| .+.+.++++.++ ..+|.|++++... .++|+|+.-...+|
T Consensus 102 ~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et-~~IDyD~~~k~a~e~kPK~ii~G~SaY~-- 178 (413)
T COG0112 102 QAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPET-GLIDYDEVEKLAKEVKPKLIIAGGSAYS-- 178 (413)
T ss_pred HHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEeccccccc-CccCHHHHHHHHHHhCCCEEEECccccc--
Confidence 568889999999999877666655422 11222 577888887653 5699999999884 58998876444444
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~ 319 (470)
..++ ++++.++|.+. |.+++.|-+|-. +.-++.-+.|+. .-.|+.+|.+|+| +|-|-|.+.+.. ++
T Consensus 179 r~id---~~~~reIad~V-GA~L~~DmAHiaGLVA~G~~p~P~~------~AdvVTtTTHKTl--rGPrGG~Il~~~eel 246 (413)
T COG0112 179 RPID---FKRFREIADEV-GAYLMVDMAHVAGLIAGGVHPNPLP------HADVVTTTTHKTL--RGPRGGIILTNDEEL 246 (413)
T ss_pred cccC---HHHHHHHHHHh-CceEEehHHHHHHHHhcccCCCCCC------ccceEeCCcccCC--CCCCceEEEeccHHH
Confidence 3445 77888888899 999999999764 333332222222 2338899999997 788999999885 88
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccCc
Q 012124 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTY 398 (470)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~ 398 (470)
.+++.+...+... .+++.-.+++.+....+..+...++..++..++.+.|.+.|.+. |+++.... .+..+.+++...
T Consensus 247 ~kkin~aVFPg~q-ggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~ 324 (413)
T COG0112 247 AKKINSAVFPGLQ-GGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSK 324 (413)
T ss_pred HHHhhhhcCCccC-CChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccC
Confidence 8888875444332 34444444433333211123334555566667788888888876 88876432 234466777521
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-CC-----CCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-FG-----DDTCIRISYAA------SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~-f~-----~~~~iRls~~~------~~~~i~~~l~~l~~~l~~ 463 (470)
+ .+. .-++.++++.||.+.--.. |. .+..|||.... .++++++..+-|.++++.
T Consensus 325 -~---------~~G-k~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 325 -G---------LTG-KKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred -C---------CCH-HHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 0 033 3445566777998854222 22 24689998652 678888888888887764
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-14 Score=139.79 Aligned_cols=339 Identities=11% Similarity=0.018 Sum_probs=192.2
Q ss_pred cCCCeEEccCCCCCCC--C-hHHHHHHHHHH-HHcCC---CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 92 AGVSVIRLAAGEPDFD--T-PVLIAEAGINA-IREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~--~-~~~~~~a~~~~-~~~~~---~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
+|+.++|+..|..... . ++.+.+++.++ ..... ..|. .....+|-+.+.+.+..... -.-+.++++++++
T Consensus 56 dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~-~~~~~~la~~l~~~l~~~~p--~~~~~v~f~~SGs 132 (464)
T TIGR00699 56 DGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPALG-NFPSKDWAKILKEGILKVAP--KGQDQVWTGMSGS 132 (464)
T ss_pred CCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhcccccCC-cHHHHHHHHHHHHhHHhhCC--CCcCEEEEeCCcH
Confidence 6778999998865433 2 78899999874 23221 1221 11122333333332222222 1236899999999
Q ss_pred HHHHHHHHHhcC--------------------------CC---CeEEEcCCCCCChHHHHHH-cCCE-----------EE
Q 012124 165 QSILQAVLAVCS--------------------------PG---DEVIIPAPFWVSYPEMARI-ADAT-----------PV 203 (470)
Q Consensus 165 ~al~~~~~~l~~--------------------------~g---d~Vlv~~p~y~~~~~~~~~-~g~~-----------~~ 203 (470)
+|.+.+++.... +| ..|+...-+|++....+.. .|.. ..
T Consensus 133 EAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~ 212 (464)
T TIGR00699 133 DANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWP 212 (464)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCce
Confidence 999999987521 11 2699999999987654332 2211 11
Q ss_pred EecCcCCC-CC-----------ccCHHhHhhhcc---CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEe
Q 012124 204 ILPTRISE-NF-----------LLDPKVLESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 204 ~v~~~~~~-~~-----------~~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
.+|..... .+ .-+++.+++.+. +++.+|++...+...|... +++.+++|.++|++| |+++|.|
T Consensus 213 ~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~-g~lLI~D 291 (464)
T TIGR00699 213 QAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-NVAFIVD 291 (464)
T ss_pred ecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEe
Confidence 12211000 00 013556777764 3566777755566668755 799999999999999 9999999
Q ss_pred ccccccccCCCCccccc--ccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 012124 268 EIYEHIIYAPATHTSFA--SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 345 (470)
Q Consensus 268 d~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~ 345 (470)
|++..|...+.. .... .+.. .-. +.+|+|.++ .| |+++..+ .+..........+++.+++...++.+.
T Consensus 292 EV~tGfGrtG~~-fa~e~~gv~~--~PD--i~t~gK~lg-~g---G~~~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~ 361 (464)
T TIGR00699 292 EVQTGVGATGKF-WAHEHWNLDD--PPD--MVTFSKKFQ-TA---GYFFHDP-AFRPNKPYRQFNTWMGDPSRALILREI 361 (464)
T ss_pred eeeeCCCCCcch-hHHHhcCCCC--CCC--EEEehhhhc-cC---Cccccch-hccCCCCcccccCCCCCHHHHHHHHHH
Confidence 999876443321 1111 1210 011 466899995 33 4444432 211111122345667888888888777
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-Ceec-CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012124 346 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423 (470)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 423 (470)
|+.-.. ++..++..+.=+..++.|.+...++|. +.-. ....|+++-+++++.. ....+.+.++++
T Consensus 362 L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~-----------~~~~i~~~~~~~- 428 (464)
T TIGR00699 362 IQEIKR-KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEA-----------KRDKLLKKARNN- 428 (464)
T ss_pred HHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHH-----------HHHHHHHHHHHC-
Confidence 653110 222222222222222333222223432 2211 1245776777775420 245677777766
Q ss_pred CEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 424 QVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 424 gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
||.+.+. ..+.+||.... +++++++++++|.+++
T Consensus 429 Gvl~~~~----g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 429 GVNIGGC----GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred CcEEecC----CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9988763 23679998775 9999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=137.00 Aligned_cols=339 Identities=11% Similarity=0.093 Sum_probs=192.4
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHH--HHHHHHHHcCCCC-CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIA--EAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~--~a~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.+||+..|... +.. ++.+. +++.+++.+.... .....-..+....+++.+.+..+. -..+.+++++++++
T Consensus 36 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~f~~sGsE 114 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGD-PALPHLFFIEGGAL 114 (431)
T ss_pred CCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCC-CCcCEEEEeCCcHH
Confidence 46778999888543 333 67777 8888887653211 111111223344455555433211 13468999999999
Q ss_pred HHHHHHHHhcC--------C------CCeEEEcCCCCCChHHHHHH-cCCE-EE--EecC--------c----C--CCCC
Q 012124 166 SILQAVLAVCS--------P------GDEVIIPAPFWVSYPEMARI-ADAT-PV--ILPT--------R----I--SENF 213 (470)
Q Consensus 166 al~~~~~~l~~--------~------gd~Vlv~~p~y~~~~~~~~~-~g~~-~~--~v~~--------~----~--~~~~ 213 (470)
|.+.+++.... . +.+|+...-+|++....+.. .|.. .. ..|. . + ....
T Consensus 115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 194 (431)
T TIGR03251 115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL 194 (431)
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence 99999887521 1 36799999999987654332 2211 00 0010 0 0 0000
Q ss_pred c-------cCHHhHhhhcc---CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-
Q 012124 214 L-------LDPKVLESKLT---EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT- 281 (470)
Q Consensus 214 ~-------~d~~~l~~~l~---~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~- 281 (470)
. -+++.+++.+. +++.++++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+....
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~~a~ 273 (431)
T TIGR03251 195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEH-DALLIFDEVQTGVGLTGTAWAY 273 (431)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhccCccchHHHH
Confidence 0 12344555552 46777777655666675 46889999999999999 999999999998644432100
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEEEcCH--HHHHHH-H-HHhhhccCCCChHHHHHHHHHHhcCCCChHHHH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVAAC-N-KIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 357 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~--~~~~~l-~-~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 357 (470)
....+.+ | +-+++|.+. . .|++.... ++.... . ......+++.+++...++.+.|+.-.. +..++
T Consensus 274 ~~~gv~P--D----i~~~gK~~~-~---~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~ 342 (431)
T TIGR03251 274 QQLGVQP--D----IVAFGKKTQ-V---CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE-ERLVD 342 (431)
T ss_pred HhcCCCC--C----EEEecccCc-c---ceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHh-cCHHH
Confidence 1112222 1 234789862 2 25665443 222211 1 011234566888888888887764110 12233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 358 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 358 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
++++.-+..++.|.+...+.+++.......|+++.++++... ....+++.|+++ ||.+.|.. .+
T Consensus 343 ~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~-----------~~~~~~~~l~~~-Gvl~~~~g----~~ 406 (431)
T TIGR03251 343 NARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTA-----------DRDEVIRQLYRE-GVLLLGCG----ER 406 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHH-----------HHHHHHHHHHhC-CeEEecCC----CC
Confidence 333333333444443333343332222233666677776420 345678887755 99997743 25
Q ss_pred cEEEEeec--CHHHHHHHHHHHHH
Q 012124 438 CIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
.+|++... +++++++++++|.+
T Consensus 407 ~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 407 SIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred eEEEECCccCCHHHHHHHHHHHHh
Confidence 68887664 99999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-13 Score=143.77 Aligned_cols=305 Identities=17% Similarity=0.151 Sum_probs=196.6
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEec-ChHHHHHHHHHHh----cCCCC----eEEEcCCCCCChHHHHHHcCCE
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSILQAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADAT 201 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~-g~~~al~~~~~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~g~~ 201 (470)
+|..++...+.+++.+..|.+ ++.+.. |++++....+.++ .++|| +|++++..|......+...|++
T Consensus 538 qG~l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~ 613 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMK 613 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCE
Confidence 678899999999999988853 455544 5555443333222 35665 5999999998888889999999
Q ss_pred EEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC
Q 012124 202 PVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA 278 (470)
Q Consensus 202 ~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~ 278 (470)
++.++.+.++ .+|++.|++++++ ++.+|++++|++-++...+ +++|+++|+++ |+++++|.++......
T Consensus 614 vv~v~~d~~G--~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~-G~~v~VDgA~~~al~~-- 685 (954)
T PRK05367 614 VVVVACDENG--NIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEH-GGQVYLDGANMNAQVG-- 685 (954)
T ss_pred EEEECCCCCC--CcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHc-CCEEEEECcChhhccC--
Confidence 9999997543 5999999999965 4667777888765444567 89999999999 9999999998632111
Q ss_pred CcccccccCCCCCceEEEeccCcccc----cccceeeEEEcCHHHHHHHHHHh-----h---hccCCCChHHHHH----H
Q 012124 279 THTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKIQ-----S---QFTSGASSISQKA----G 342 (470)
Q Consensus 279 ~~~~~~~~~~~~~~~i~i~S~sK~~~----~~G~r~G~~~~~~~~~~~l~~~~-----~---~~~~~~~~~~q~a----~ 342 (470)
+.. +...+-.++..|.+|+|+ ..|-.+|++.+.+++...+-... . ....+++.+.|.. +
T Consensus 686 ----l~~-pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a 760 (954)
T PRK05367 686 ----LAR-PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPIS 760 (954)
T ss_pred ----CCC-hhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHH
Confidence 111 112345588899999974 23344778887765544332111 0 0111223332211 2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc----eEEE-eeeccCccCCcccCCCCCCCHHHHHH
Q 012124 343 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYL-FIDFSTYYGSEAEGFGKIENSESLCR 417 (470)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (470)
..++.. .+.+.+++..+..-.+.+++.+.|++...+.+..+.+ .+.+ +..++... ..+..++.+
T Consensus 761 ~~yi~~--~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~---------g~~~~di~k 829 (954)
T PRK05367 761 WMYIRM--MGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKEST---------GITVDDIAK 829 (954)
T ss_pred HHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccC---------CCCHHHHHH
Confidence 223322 1356677777766788889999887643443333221 1212 11222210 015688999
Q ss_pred HHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 418 YLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 418 ~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|. ++|+.... ..|..++.++++++. +.++|+.+++.+..+.+++.
T Consensus 830 rL~-d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~ 877 (954)
T PRK05367 830 RLI-DYGFHAPT-MSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEID 877 (954)
T ss_pred HHH-HCCCeEee-cCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 986 45887654 335557889999886 88999999999988876654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-13 Score=138.90 Aligned_cols=313 Identities=16% Similarity=0.145 Sum_probs=197.2
Q ss_pred CCCCC---CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc----C---C-CCeEEEcCCCCCChHH
Q 012124 125 TRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----S---P-GDEVIIPAPFWVSYPE 193 (470)
Q Consensus 125 ~~y~~---~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~----~---~-gd~Vlv~~p~y~~~~~ 193 (470)
+-|.| .+|+.++...+.+++.+..|.+.. .+.-. ++.++-...+.++. . + .++|+++.-.|.....
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~--Sl~p~-sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpa 606 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFDAI--CMQPN-SGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPA 606 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCCeE--eecCC-chHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHH
Confidence 66777 799999999999999998886533 23233 34444434444432 1 2 3678888877765556
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccc
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 270 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~ 270 (470)
.+...|++++.++.+.++ .+|+++|++.++ +++.+|.+++|++-++. .+.+++|+++|+++ |+++++|.++
T Consensus 607 sa~~~GieVv~Vp~D~~G--~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~-Galv~vDgA~ 680 (954)
T PRK12566 607 SAQMAGMRVVIVECDPDG--NVDLDDLKAKAAAAGDRLSCLMITYPSTHGVY---EEGIREICEVVHQH-GGQVYMDGAN 680 (954)
T ss_pred HHHHCCCEEEEeccCCCC--CcCHHHHHHHhhccCCCEEEEEEEecCcCcee---cchHHHHHHHHHHc-CCEEEEEeeC
Confidence 678899999999997544 599999999996 56777777888775544 34499999999999 9999999988
Q ss_pred cccccCCCCcccccccCCCCCceEEEeccCccccc----ccceeeEEEcCHHHHHHHHHHh------------hhccCCC
Q 012124 271 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNKIQ------------SQFTSGA 334 (470)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~------------~~~~~~~ 334 (470)
.--. ..+.. +...+-.|+.+++.|+|+. .|.-+|.+...+++...+.... .....+.
T Consensus 681 ~~a~------~~l~~-Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~ 753 (954)
T PRK12566 681 LNAQ------VGLAR-PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPW 753 (954)
T ss_pred hhhc------cCCCC-hhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeeccc
Confidence 5211 11111 1124556999999998852 2333555555554444333221 0001111
Q ss_pred -ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE--EeeeccCccCCcccCCCCCCC
Q 012124 335 -SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 335 -~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~ 411 (470)
+.....++..++.. .+.+ +.+.......+.+++.+.|.+..++.+.++.+.++ +.++++...+ . ...+
T Consensus 754 gsa~~l~~A~~Yi~~--lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~--~----~g~~ 824 (954)
T PRK12566 754 GSASILPISWMYIAM--MGPQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKA--Q----TGIS 824 (954)
T ss_pred chHHHHHHHHHHHHH--HCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEcccccc--c----cCCC
Confidence 11122334444443 1345 66666666778888999987643555533222211 1223321100 0 0126
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
..++.++|. ++||...- ..|...+++|++.+. +.++|+.+++.|+++.++.
T Consensus 825 ~~dvakRL~-d~Gihapt-~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 825 EEDVAKRLM-DYGFHAPT-MSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred HHHHHHHHH-HCCcEEeE-EeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 688999998 55886543 345457899999986 8899999999998887763
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-13 Score=124.62 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=123.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~ 208 (470)
...|.+.|+..- -|+ --+.+++++.|+..++..+.++||.|+-..--|.+..+. ++.+|.++..+..
T Consensus 64 ~~vlE~RiAaLE---GG~-----aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~- 134 (426)
T COG2873 64 TDVLEERIAALE---GGV-----AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP- 134 (426)
T ss_pred HHHHHHHHHHhh---cch-----hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC-
Confidence 345666666542 122 346677888999999999999999999998888876654 5778999999874
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|++.+++++++++|+||+.+..||.+.+.+ +++|+++|+++ ++++|+|..+..- .-+..++
T Consensus 135 ------~d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~-gvpliVDNT~atp-------yl~rP~~- 196 (426)
T COG2873 135 ------DDPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRH-GVPLIVDNTFATP-------YLCRPIE- 196 (426)
T ss_pred ------CCHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHc-CCcEEEecCCCcc-------eecchhh-
Confidence 3899999999999999999999999999999 99999999999 9999999988641 1112222
Q ss_pred CCCceEEEeccCcccccccceeeEEEc
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
++-.|++.|.+|.+|-.|--+|-++.
T Consensus 197 -hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 197 -HGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred -cCCCEEEEeecccccCCccccceEEE
Confidence 56779999999999767877776664
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-13 Score=125.57 Aligned_cols=343 Identities=13% Similarity=0.094 Sum_probs=219.5
Q ss_pred cCCCeEEccCCCCCCC---ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
.|+++||+..+-.... ..|++.+++.+....- ...|..-. ..++.+.+.+.+.+ -+.+.|.+.+++++
T Consensus 54 ~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff~nsGTe 127 (433)
T KOG1401|consen 54 DGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFFCNSGTE 127 (433)
T ss_pred CcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccC-----CCccEEEEecCCcH
Confidence 6778999988763222 2688888888887653 22332211 33444444444322 27789999999999
Q ss_pred HHHHHHHHhcC------CCC--eEEEcCCCCCChH-HHHHHcCCEEEEecCcCCC-----CCccCHHhHhhhccCC---c
Q 012124 166 SILQAVLAVCS------PGD--EVIIPAPFWVSYP-EMARIADATPVILPTRISE-----NFLLDPKVLESKLTEK---S 228 (470)
Q Consensus 166 al~~~~~~l~~------~gd--~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~-----~~~~d~~~l~~~l~~~---~ 228 (470)
|.+.+++.-.+ +-+ .|+...-+|++-. ..+...+......|.++-- ..--|...+++.++.+ +
T Consensus 128 Ane~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~I 207 (433)
T KOG1401|consen 128 ANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEI 207 (433)
T ss_pred HHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCce
Confidence 99998886432 112 3777777777654 3444344444444432110 0012788899988653 4
Q ss_pred eEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC-cccccccCCCCCceEEEeccCcccccc
Q 012124 229 RLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 229 ~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
.++++...+--.|. ..+++.+..|...|+++ |+++|.||++..|...+.. ...+...-++ |.++.|.++ .
T Consensus 208 aAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~-~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD------I~t~aK~L~-g 279 (433)
T KOG1401|consen 208 AAVIVEPIQGAGGIIPADPEFLIGLRKECDDN-GVLLIFDEVQTGLGRLGYGWAQEYFGVTPD------ITTVAKPLG-G 279 (433)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHhhc-CceEEeehhhhCccccchHHHHHHhCcCCc------ceeehhhcc-C
Confidence 66776655666775 56889999999999999 9999999999986544321 1111122222 677889998 9
Q ss_pred cceeeEEEcCHHHHHHHHHHhh---hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 307 GWRLGYIAGPKHFVAACNKIQS---QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~---~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
|+++|..++.+++.+.+..-.. ..+++.++++..++...++.-.. .++++++.+.-+..++.+.+.+.+.+....-
T Consensus 280 GlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g 358 (433)
T KOG1401|consen 280 GLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIGKELRKLLDEYLKKTPNSICG 358 (433)
T ss_pred CceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccCCCceee
Confidence 9999999999999998875443 66788999999999888876432 6888888888888888899988875432221
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHH----HH----HHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSE----SL----CRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVE 455 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~l----~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~ 455 (470)
.-..++++.+.+..+... ..|.. .+ ...+++ .||.+.|-. -+++.+++|.++..++
T Consensus 359 ~~grgl~ig~~~~~p~~~-------~~d~~~~~~ll~~~~~~~~~~-~gv~i~P~~--------~l~~~~~~E~i~~~l~ 422 (433)
T KOG1401|consen 359 GVGRGLVIGFEFEGPVYK-------FADAAREQGLLILTLGKGLLE-EGVRIAPIY--------LLTVEHTPEVIQRLLT 422 (433)
T ss_pred eeeeEEEEEEEEeechhh-------hhhhhhhhhHHHHHHhccccc-ceEEEeccc--------cccccCcHHHHHHHHH
Confidence 134455555444322110 00111 11 111222 255555511 1333446889999999
Q ss_pred HHHHHHHhhC
Q 012124 456 RIKKGLLTLR 465 (470)
Q Consensus 456 ~l~~~l~~~~ 465 (470)
.+.+.++++.
T Consensus 423 i~~~~l~~~~ 432 (433)
T KOG1401|consen 423 ILEKVLSALN 432 (433)
T ss_pred HHHHHHHHhc
Confidence 9999887653
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-13 Score=136.03 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=122.6
Q ss_pred CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEe
Q 012124 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVIL 205 (470)
Q Consensus 127 y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v 205 (470)
...+.|...--+..+.. .|| ...-.++++|++.++..++.+++.+||.|+++.-||-+..+. +...|+.++++
T Consensus 169 L~~~eG~i~eAq~~AA~---~fg---Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl 242 (720)
T PRK13578 169 LLIHEGAAKDAQKHAAK---VFN---ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYL 242 (720)
T ss_pred CCCCChHHHHHHHHHHH---HhC---CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEe
Confidence 33455554333333333 355 345788999999999999999999999999999999998885 88999999998
Q ss_pred cCcCCCCCc----cCHHh-----HhhhccCC----------ceEEEEcCCCCCcccCCCHHHHHHHHHH-HHhCCCEEEE
Q 012124 206 PTRISENFL----LDPKV-----LESKLTEK----------SRLLILCSPSNPTGSVYPKNLLDEIARI-VAKHPRLLVL 265 (470)
Q Consensus 206 ~~~~~~~~~----~d~~~-----l~~~l~~~----------~~~i~l~~p~nPtG~~~s~~~~~~l~~~-~~~~~~~~iI 265 (470)
.... +.++ ++.+. +++++.+. .+++++++|++ -|++++ +++|++. ++.+ + .|+
T Consensus 243 ~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~-~-~ll 315 (720)
T PRK13578 243 ETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLC-D-YIL 315 (720)
T ss_pred eccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccC-C-cEE
Confidence 7654 2233 35444 77777543 58888898887 699999 7888888 6777 7 899
Q ss_pred Eeccccc-cccCCC--Ccccc-cccCCCCCceEEEeccCcccccccceee-EEEcCH
Q 012124 266 SDEIYEH-IIYAPA--THTSF-ASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPK 317 (470)
Q Consensus 266 ~Dd~~~~-~~~~~~--~~~~~-~~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~ 317 (470)
+||+|+. +.|... ..+.. .....+...++++.|.+|.+ +++.-+ ++....
T Consensus 316 vDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL--~alTQaS~LHvk~ 370 (720)
T PRK13578 316 FDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQ--AGFSQTSQIHKKD 370 (720)
T ss_pred EeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcc--hhhhhHhhhhcCC
Confidence 9999985 334321 11111 22222234679999999998 455444 444533
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-13 Score=131.51 Aligned_cols=280 Identities=15% Similarity=0.146 Sum_probs=196.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC-----C---CC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-----P---GD 179 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~-----~---gd 179 (470)
+++...+.+...+.++.......++..++.+.+..++.+.++.+ ..-.=.+|+|+++++.+.+.+..+ . +.
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~ 152 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESG 152 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46677788888887766655555588999999999999999875 334567899999999877776421 1 11
Q ss_pred ------eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceE--EEEcCCCCCcccCCCHHHHHH
Q 012124 180 ------EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL--LILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 180 ------~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~--i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+|+++.-.|.++...++.+|.+...+++++. .+.+|++++++++++.+.. |+-+.++.+||.+=+ +++
T Consensus 153 ~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~~ 228 (460)
T COG0076 153 KPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD---IEE 228 (460)
T ss_pred ccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCC---HHH
Confidence 6999999999999999999999999999865 6779999999999876665 777888899999888 999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-HHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~ 330 (470)
|.++|+++ ++|+++|.+|+.+...-......+.+ ......-+.-+++|.. +.-..+||++.+++ -..+.......+
T Consensus 229 ia~ia~~~-~i~lHVDAA~GG~~~pf~~~~~~~~f-~l~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~y 305 (460)
T COG0076 229 LADIAEEY-GIWLHVDAAFGGFLLPFLEPDGRWDF-GLEGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYY 305 (460)
T ss_pred HHHHHHHc-CCcEEEEccccceeecccCccchhhc-CCCCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhccccc
Confidence 99999999 99999999999865321111111111 1112234556899987 57788999998765 333333222111
Q ss_pred c---------CCCChHH-HHHHH-HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 331 T---------SGASSIS-QKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 331 ~---------~~~~~~~-q~a~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
. ...+..+ +.++. ..+.. ++.+.++++.++..+..+.+.+.|++.+.+++..+.....+.++.++
T Consensus 306 l~~~~~~~~ti~~sr~~~~~~~~~~~l~~--lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 306 LPGGGIPNFTILGSRPGRQALALYANLRR--LGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred CCCCCcCceeEeeccchHHHHHHHHHHHH--hCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 1 1112222 22222 22222 13577888888888999999999999866887654344446677754
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-12 Score=135.13 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=199.6
Q ss_pred CCCCCC---CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc--------CCCCeEEEcCCCCCChH
Q 012124 124 FTRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--------SPGDEVIIPAPFWVSYP 192 (470)
Q Consensus 124 ~~~y~~---~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~ 192 (470)
.+-|.| .+|..++...+.+++.+..|.+ .-.+ ..+|+.++-...+.++. ...++|+++.-.+....
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd--~~Sl-~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP 592 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD--AISL-QPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP 592 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC--Cccc-CCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence 344543 3688899999999999988975 2223 33444444433333322 12367999999987777
Q ss_pred HHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc
Q 012124 193 EMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 269 (470)
Q Consensus 193 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~ 269 (470)
..++..|++++.++.+.++ .+|+++|++.++ +++++|++++|+| +|..-+ .+++|+++|+++ |.++++|.+
T Consensus 593 asa~~~G~~Vv~V~~d~~G--~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~-G~~v~VDgA 666 (939)
T TIGR00461 593 ASAAMAGMQVVPVNCDQDG--NIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSF-GGQVYLDGA 666 (939)
T ss_pred HHHHHCCCEEEEeccCCCC--CcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHc-CCEEEEEec
Confidence 7789999999999987443 599999999997 4888999999999 777643 288999999999 999999999
Q ss_pred ccccccCCCCcccccccCCCCCceEEEeccCcccc----cccceeeEEEcCHHHHHHHHHH---------------hhhc
Q 012124 270 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKI---------------QSQF 330 (470)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~----~~G~r~G~~~~~~~~~~~l~~~---------------~~~~ 330 (470)
+..-.. .+. -+...+-.++++|..|+|+ ..|-.+|++.+.+++...+-.. ....
T Consensus 667 q~~al~------~l~-~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s 739 (939)
T TIGR00461 667 NMNAQV------GLT-SPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVS 739 (939)
T ss_pred ChhhCC------CCC-CccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcccccccc
Confidence 853111 111 1122455688999999774 3555679999887655443200 0011
Q ss_pred cCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEE---EeeeccCccCCcccC
Q 012124 331 TSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFY---LFIDFSTYYGSEAEG 405 (470)
Q Consensus 331 ~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~---~~~~~~~~~~~~~~~ 405 (470)
+.+ .+......+..+|.. ++.+.+++..+..-.+.+++.+.|.+. +++..+. .+.+ +.++++.. .+
T Consensus 740 ~~~~g~a~~~l~a~~yi~~--lG~~GL~~~a~~ailnAnYl~~rL~~~--~~~l~~~~~~~~~hEfv~~~~~~--~~--- 810 (939)
T TIGR00461 740 AAPYGSASILPISWMYIKM--MGNEGLPKASVVAILNANYMATRLKDH--YPILFVGTLKHVAHECILDLRPL--KA--- 810 (939)
T ss_pred ccccCcHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHhhcc--CcccccCCCCceeEEEEEeccch--hh---
Confidence 111 121222333344443 146778888888888999999999763 3433221 2221 23455421 00
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
....+..++.++|.+. |+.... ..|-..+.+-+..+ .+.++|+.+++.+.++-+++.
T Consensus 811 -~~g~~~~dIakrL~d~-G~hapt-~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 811 -KTGIEAIDVAKRLQDY-GFHAPT-LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred -hcCCCHHHHHHHHHhC-Ceeccc-cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 0112678999999876 876433 33444455444444 488999999988877766543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=122.37 Aligned_cols=294 Identities=11% Similarity=0.036 Sum_probs=197.7
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 209 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 209 (470)
+..++.+.+.+|+.+.+|.+-+.-.=++|+|+++++...+.+..+ +...|++++-+|.+...+++.+|.+++.||++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d- 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL- 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC-
Confidence 678999999999999999643221347899999999887776533 33478889999999999999999999999996
Q ss_pred CCCCccCHHhHhhhccCC---ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE-----EEEEeccccccccCCCCcc
Q 012124 210 SENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL-----LVLSDEIYEHIIYAPATHT 281 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~---~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~-----~iI~Dd~~~~~~~~~~~~~ 281 (470)
.++.+|++.|++++.++ +-+|+.+..+.++|.+=| +++|.++|+++ |+ |+.+|.+|+.+........
T Consensus 209 -~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~-g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 209 -VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEEC-GFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred -CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHc-CCccCCeeEEEeccchhhHhhhcccc
Confidence 44569999999999654 334445667889999988 88889999998 86 9999999987643111111
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh-----ccCCCChHHH--HHHHHHHhcCCCChH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ-----FTSGASSISQ--KAGVAALGLGYAGGE 354 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-----~~~~~~~~~q--~a~~~~l~~~~~~~~ 354 (470)
+...+. ..-.=+.-+.+|.++ ....+|.++...+.++.+..-..+ .+...+.... ..+-..|.. ++.+
T Consensus 284 ~~~df~--~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~--~G~~ 358 (470)
T PLN02263 284 PKVTFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR--KGYR 358 (470)
T ss_pred cccCCC--cCccEEEECCccccC-CCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH--hCHH
Confidence 111121 112224456789986 668899999887665444221111 1122222222 222233332 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 355 VVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
.+++..+...+..+++.+.|++. |+. +..|.... +.++.|. ... ..+ |-.+.+
T Consensus 359 G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~-V~f~~p~--------------~~~-----~~~-gW~L~~---- 412 (470)
T PLN02263 359 GFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSST-VVFERPK--------------DEE-----FVR-RWQLAC---- 412 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceE-EEEecCc--------------hHH-----hhc-ceEEcc----
Confidence 77778888888899999999888 654 45566555 4444432 111 122 555543
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 434 GDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 434 ~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.++.+++.++. +.+.++++++.|++..+.
T Consensus 413 -~~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 413 -QGNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred -CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 23568998886 789999999999887663
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-13 Score=129.47 Aligned_cols=314 Identities=12% Similarity=0.060 Sum_probs=200.7
Q ss_pred HHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCeEEEcCCCCCC
Q 012124 112 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVS 190 (470)
Q Consensus 112 ~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~ 190 (470)
.++++.+.+-. ..++ ++...++-+.+.+.+++.++.+.+.+-++++.|++.+++.++..++ ++||.|++.. .|..
T Consensus 19 ~~~~~~~~~~~-~~HR--s~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~ 94 (374)
T TIGR01365 19 SIEELKNAPLG-RSHR--SKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK 94 (374)
T ss_pred hHHHHhhhhcc-cCcC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH
Confidence 55566554332 2222 3355677777788888888853233346779999999999999998 5899998854 3332
Q ss_pred h-H-HHHHHcCC-EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 191 Y-P-EMARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 191 ~-~-~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
- . ++++..|+ ++..+... -+..+|++.++. . +.+++++.-..||+..+. ++++.. .+ +.++|+|
T Consensus 95 r~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv---~~i~~~--~~-~~lliVD 161 (374)
T TIGR01365 95 GWVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPN---GDFIPA--DR-EGLTICD 161 (374)
T ss_pred HHHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC--C---CCEEEecCCCchheeccc---cccccc--cC-CCcEEEE
Confidence 2 3 67788999 47777654 344589999874 1 225556556689999984 444421 25 7899999
Q ss_pred ccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh--------------------
Q 012124 268 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------------- 327 (470)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-------------------- 327 (470)
.+-+.. + .+..+. +-.+++.|.-|.+++|+ .++++++.++.+++.....
T Consensus 162 avSs~g---~-~~l~~d------~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~ 230 (374)
T TIGR01365 162 ATSAAF---A-QDLDYH------KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKK 230 (374)
T ss_pred ccchhc---C-CCCChh------HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhh
Confidence 887642 1 112222 24478888999997543 4788898888777655211
Q ss_pred ---hhccCCCChHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----CceEEEeeeccCc-
Q 012124 328 ---SQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTY- 398 (470)
Q Consensus 328 ---~~~~~~~~~~~q~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g~~~~~~~~~~- 398 (470)
..+...++....+++..+|+.- .+ ..++.+.++++++.+.+++.+++++.+.+... .+.....+.++..
T Consensus 231 ~~~~~t~~TP~v~~l~a~~~~l~~i--~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~ 308 (374)
T TIGR01365 231 IFEGSTINTPSMLCVEDWLDALKWA--ESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPA 308 (374)
T ss_pred hhcCCCCCChHHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCcc
Confidence 1122233444444445555420 02 24888999999999999999999832555432 2333344555432
Q ss_pred cCCcccCCCCCCC-----HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 399 YGSEAEGFGKIEN-----SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 399 ~~~~~~~~~~~~~-----~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+... .++ ..++.+.|.++ ||.+.+|..-..+..|||+... +.++++.++..|.=+.+
T Consensus 309 ~~~~------~~~~~~~~~~~~~~~l~~~-gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 309 IDAL------DEDAQADFAKELISTLEKE-GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred cccc------ccchhhHHHHHHHHHHHHC-CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 1000 001 46788777665 9999988654345789999776 89999999998875544
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-12 Score=132.89 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=124.8
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
.+.|...--+.++..+ || .....++++|++.++..++.+++++||.|+++.-||-+..+.+...|+++++++..
T Consensus 202 ~p~G~I~eAq~~aA~~---fg---A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~ 275 (755)
T PRK15029 202 DHTGAFGESEKYAARV---FG---ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPS 275 (755)
T ss_pred CCCcHHHHHHHHHHHH---hC---CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEeccc
Confidence 4455544333333333 55 44678999999999999999999999999999999999999999999999999754
Q ss_pred CCCCCc----cC-----HHhHhhhccC--Cce--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc
Q 012124 209 ISENFL----LD-----PKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 269 (470)
Q Consensus 209 ~~~~~~----~d-----~~~l~~~l~~--~~~--------~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~ 269 (470)
. +.++ ++ ++.+++++.. ..+ ++++++|++ -|++.+ +++|++.|+++ ++.|++||+
T Consensus 276 ~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEA 349 (755)
T PRK15029 276 R-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKT-SDRLHFDEA 349 (755)
T ss_pred c-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhc-CCeEEEECc
Confidence 3 2222 34 8889888843 333 888999987 689999 88999999999 999999999
Q ss_pred ccc-cccCCCCccccccc-----CCCCCceEEEeccCcccccccceeeE-EEc
Q 012124 270 YEH-IIYAPATHTSFASL-----PGMWERTLTVNGFSKAFAMTGWRLGY-IAG 315 (470)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~-----~~~~~~~i~i~S~sK~~~~~G~r~G~-~~~ 315 (470)
|+. +.|... .+....+ ......++++.|.+|++ |++.-|. +..
T Consensus 350 hGah~~F~~~-~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 350 WYGYARFNPI-YADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred cccccccCcc-ccccccccccccccCCCceEEEEchhhcc--cchhhhhhhee
Confidence 975 444331 2211222 11123359999999998 4555454 434
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=136.86 Aligned_cols=222 Identities=21% Similarity=0.269 Sum_probs=136.7
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCC----ccCH-----HhHhhh
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF----LLDP-----KVLESK 223 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~----~~d~-----~~l~~~ 223 (470)
.....++++|++.++..++.++++|||.|+++.-+|-+..+.+...|+++++++.. ++.+ .+++ +.++++
T Consensus 81 Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~-~~~~gi~~~i~~~~~~~~~i~~~ 159 (417)
T PF01276_consen 81 ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE-DNEYGIIGGISPDEFNEEDIEEA 159 (417)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE-E-TTS-BEEB-GGGGSHHHHHHH
T ss_pred CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC-ccccCCccCCChhhhhHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999876 3332 3466 888888
Q ss_pred ccC--Cce---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCccccccc---CCCCCceE
Q 012124 224 LTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASL---PGMWERTL 294 (470)
Q Consensus 224 l~~--~~~---~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~---~~~~~~~i 294 (470)
+++ ..+ ++++++|++ -|++.+ +++|+++|+++ +..|++||+|+. +.|. ..+.+...+ ......++
T Consensus 160 l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEAhGah~~F~-~lp~~a~~~gad~~~~~~~~ 233 (417)
T PF01276_consen 160 LKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKH-GIPLLVDEAHGAHFGFH-PLPRSALALGADRPNDPGII 233 (417)
T ss_dssp HHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCT-ECEEEEE-TT-TTGGCS-GGGTTCSSTTSS-CTSBEEE
T ss_pred HHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhccc-CCEEEEEccccccccCC-CCccchhhccCcccccccee
Confidence 853 344 489999987 689999 89999999999 999999999885 3343 212222212 12235779
Q ss_pred EEeccCcccccccce-eeEEEcCHH---HHHHHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWR-LGYIAGPKH---FVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r-~G~~~~~~~---~~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
++.|.+|++ +++. .+++....+ -.++++...... +.+|+.+....+..+...- ....-+++.+...++.+.
T Consensus 234 vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m--~~~~G~~l~~~~i~~a~~ 309 (417)
T PF01276_consen 234 VVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQM--EEEEGRELLEEAIELAEE 309 (417)
T ss_dssp EEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHH
T ss_pred eeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHH
Confidence 999999998 4454 345554443 234555433333 3334444333332222210 012223344444445555
Q ss_pred HHHHh---ccCCCCeecCC
Q 012124 370 LVKSF---GELEGVKMSEP 385 (470)
Q Consensus 370 l~~~L---~~~~g~~~~~~ 385 (470)
+++.+ +++.++++..|
T Consensus 310 ~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 310 FRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp HHHHHHHHCCT-SSEESS-
T ss_pred HHHHHHhcCCCceEecCCc
Confidence 55555 55656655433
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.7e-15 Score=138.81 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=157.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
+.+++.+++.++.. +...|+......+|.+.+++.+ | .+..+++.+++.+..++++++++|++.|++.+++
T Consensus 7 ~~~~m~~a~~~a~~-gd~~Yg~D~~~~~l~~~i~~l~----g----~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~a 77 (290)
T PF01212_consen 7 PTPAMLEAMAAANV-GDDAYGEDPTTARLEERIAELF----G----KEAALFVPSGTMANQLALRAHLRPGESVICADTA 77 (290)
T ss_dssp S-HHEEHHHHHTTS-B-CCTTSSHHHHHHHHHHHHHH----T----SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTE
T ss_pred CCHHHHHHHHcccc-CCcccCCChhHHHHHHHHHHHc----C----CCEEEEeCCCChHHHHHHHHHHhcCCceeccccc
Confidence 56778888844433 3346988777778888888775 3 3456788899999999999999999999999987
Q ss_pred CCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCC-cccCCCHHHHHHHHHHHH
Q 012124 188 WVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNP-TGSVYPKNLLDEIARIVA 257 (470)
Q Consensus 188 y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nP-tG~~~s~~~~~~l~~~~~ 257 (470)
|.... ......|+++++++...+ ..+|++.|++.+.. ++++|++.+++|. .|.++|.+++++|.++|+
T Consensus 78 Hi~~~E~ga~~~~~G~~~~~l~~~~~--G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~ 155 (290)
T PF01212_consen 78 HIHFDETGAIEELSGAKLIPLPSDDD--GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAR 155 (290)
T ss_dssp HHHHSSTTHHHHHTTCEEEEEBECTG--TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHH
T ss_pred eeeeeccchhhHhcCcEEEECCCccc--CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHH
Confidence 65322 234679999999997532 45999999999953 5789999999885 489999999999999999
Q ss_pred hCCCEEEEEecccc--ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCC
Q 012124 258 KHPRLLVLSDEIYE--HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335 (470)
Q Consensus 258 ~~~~~~iI~Dd~~~--~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~ 335 (470)
+| |+.++.|.+=- ...+.+ .++..+.. .-.++.-|++|.+++++ -+.+++++++++.....+........
T Consensus 156 ~~-gl~lhmDGARl~~a~~~~~---~~~~e~~~--~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~k~~gg~~~ 227 (290)
T PF01212_consen 156 EH-GLPLHMDGARLANAAAALG---VSLAEIAA--GADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQRKRLGGGMR 227 (290)
T ss_dssp HH-T-EEEEEETTHHHHHCHHH---HHHHHHHT--TSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHHHHHTHHHH
T ss_pred hC-ceEEEEehhhHHHhhhccc---ccHHHHhh--hCCEEEEEEEccccccc--ceEEEechHHHHHHHHHHHHhccCee
Confidence 99 99999998721 111111 12222221 22255567999987655 36677899877665444333321111
Q ss_pred ---hHHH-----HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 336 ---SISQ-----KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 336 ---~~~q-----~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
.+.. .++...+ +.+.. ...+..++.+.+.+.|+.++
T Consensus 228 ~~G~~~a~~~~~~~~l~~l------~~~~~-~~~~~~~~A~~La~~l~~~~ 271 (290)
T PF01212_consen 228 QAGVLAAAELYQFAALRAL------ELWLE-RARHANAMAKRLAAGLEALG 271 (290)
T ss_dssp HTTHHHHHHHHHHHHHCHE------ECSHH-HHHCHHHHHHCHHHCHHEEC
T ss_pred ecceeeeechhhHHHHHHH------HhhHH-HHHHHHHHHHHHHHHHHHCC
Confidence 1111 1112222 22333 33444556777888888773
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >COG1725 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-16 Score=126.49 Aligned_cols=54 Identities=9% Similarity=-0.064 Sum_probs=51.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
-.|.+|+|+||+||||.|+||..++||++| ||++|+.+|+|+++.| +|+||+.+
T Consensus 22 ~~I~~g~l~pGdkLPSvRelA~~~~VNpnTv~raY~eLE~eG~i~t~rg-~G~fV~~~ 78 (125)
T COG1725 22 EQIASGELKPGDKLPSVRELAKDLGVNPNTVQRAYQELEREGIVETKRG-KGTFVTED 78 (125)
T ss_pred HHHHhCCcCCCCCCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecC-eeEEEcCC
Confidence 468899999999999999999999999999 9999999999999999 99999875
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=127.55 Aligned_cols=297 Identities=19% Similarity=0.209 Sum_probs=200.8
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 210 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 210 (470)
.|..++.+.+.+.+++..| .++.+++..| -......+.+|+.||.-|+-+.-.+.+...-++..|+.++....+
T Consensus 178 ~G~~~~hkelE~l~A~f~g---~e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-- 251 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLG---VEDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN-- 251 (519)
T ss_pred cccHHHHHHHHHHHHHhcC---CcceEEEecc-ccccccCcceeecCCcceeeccccchheeccccccCceEEEEecC--
Confidence 4666666666666665556 4567777776 334455677889999999999999999999999999999888753
Q ss_pred CCCccCHHhHhhhccC-------C-----ceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccC-
Q 012124 211 ENFLLDPKVLESKLTE-------K-----SRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA- 276 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~-------~-----~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~- 276 (470)
|...||+.+++ + -+.+++ -..-..-|.+.. +.+++++++++ ..+++.||+++....+
T Consensus 252 -----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkky-kayl~lDEAHSiGA~g~ 322 (519)
T KOG1357|consen 252 -----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKY-KAYLYLDEAHSIGAMGA 322 (519)
T ss_pred -----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccc-cEEEEeeccccccccCC
Confidence 56666665532 1 123333 333446677766 88999999999 9999999999864442
Q ss_pred -CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh---hccCCCChHHHHHHHHHH-hcCCC
Q 012124 277 -PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS---QFTSGASSISQKAGVAAL-GLGYA 351 (470)
Q Consensus 277 -~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~---~~~~~~~~~~q~a~~~~l-~~~~~ 351 (470)
+....-+...++ .+..|.+++|.|++|..| ||+.+++++++.++.... ..+..++++.|+...... -.|..
T Consensus 323 tGrgvce~~g~d~-~dvDImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~d 398 (519)
T KOG1357|consen 323 TGRGVCEYFGVDP-EDVDIMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGED 398 (519)
T ss_pred CCcceeeccCCCc-hhheeecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCC
Confidence 222233333444 577899999999998677 999999999998764322 223345566666544332 23333
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE--EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
+....++..++++++..+++..|.+. |+.+........ +.+..|. ....+.++|+++ +|.+.-
T Consensus 399 gt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~-------------k~~~f~r~~l~~-nigvVv 463 (519)
T KOG1357|consen 399 GTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPA-------------KIVAFSREMLER-NIGVVV 463 (519)
T ss_pred cccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCcc-------------cccHHHHHHHhc-CceEEE
Confidence 35667778888899999999999887 777776655532 2223332 455777778776 555443
Q ss_pred CCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 430 GDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 430 g~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+..-.. ....|++.+. +.|+++.+++.+.++-
T Consensus 464 vgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 464 VGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred EeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 332221 3578888775 8889999888877653
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-12 Score=128.52 Aligned_cols=328 Identities=13% Similarity=0.120 Sum_probs=202.2
Q ss_pred HHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCC---------CC--CcEEEecChHHHHHHHHHHhc----C----
Q 012124 116 GINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY---------TP--DQILVSNGAKQSILQAVLAVC----S---- 176 (470)
Q Consensus 116 ~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~---------~~--~~i~it~g~~~al~~~~~~l~----~---- 176 (470)
+...+......|...+...++.+.+.+|+.+..+..- .+ ..=++|+|++++...++.+.. .
T Consensus 110 l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~ 189 (522)
T TIGR03799 110 LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGD 189 (522)
T ss_pred HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccc
Confidence 5555655566676777888999999999988764210 11 234678899988877665421 1
Q ss_pred ------------------CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhcc----CCceEE
Q 012124 177 ------------------PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLT----EKSRLL 231 (470)
Q Consensus 177 ------------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i 231 (470)
++..|++.+-.|.+....++.+|. +++.+|++. ++.+|++.|+++++ ++++.+
T Consensus 190 ~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~ 267 (522)
T TIGR03799 190 FKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPL 267 (522)
T ss_pred ccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcE
Confidence 234688888999999999999998 789999974 45699999999885 355555
Q ss_pred EE--cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc-cCCCCCceEEEeccCcccccccc
Q 012124 232 IL--CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 232 ~l--~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
++ +..++.||.+-| +++|+++|+++ |+|+++|.+|+....-. +.... +.+...-..+..+.+|.+. ...
T Consensus 268 ~vvataGtt~tGaiDp---l~eIa~i~~~~-g~~lHVDaA~gg~~~~~---~~~r~~l~gle~aDSit~d~HK~l~-~P~ 339 (522)
T TIGR03799 268 AIVGVAGTTETGNIDP---LDEMADIAQEL-GCHFHVDAAWGGATLLS---NTYRHLLKGIERADSVTIDAHKQLY-VPM 339 (522)
T ss_pred EEEEEecCcCCCCcCC---HHHHHHHHHHc-CCeEEEEchhhhHHHhC---HHHHHHhcCchhCCEEEEChhhcCC-cCc
Confidence 44 345679999999 88999999999 99999999998633211 11111 1211133467788999764 446
Q ss_pred eeeEEEcC-HHHHHHHHHHhhh-----------ccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 309 RLGYIAGP-KHFVAACNKIQSQ-----------FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 309 r~G~~~~~-~~~~~~l~~~~~~-----------~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
.+|+++.. +++.+.+.....+ ..+ ++-+.....+...|+. ++...++++.++..+..+++.+.|+
T Consensus 340 g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~--lG~~G~~~ii~~~~~la~~l~~~L~ 417 (522)
T TIGR03799 340 GAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHI--IGRKGYELLIDQSIEKAKYFADLIQ 417 (522)
T ss_pred ccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68988775 4454443321000 011 1111112223333332 1256678888888999999999999
Q ss_pred cCCCCeecCC-CceEEEeeec-cCccCCcc-----cCCCC-CC----CHHHHHHHHHHcCCEEEECC----CCCCCC--C
Q 012124 376 ELEGVKMSEP-QGAFYLFIDF-STYYGSEA-----EGFGK-IE----NSESLCRYLLDKAQVALVPG----DAFGDD--T 437 (470)
Q Consensus 376 ~~~g~~~~~~-~~g~~~~~~~-~~~~~~~~-----~~~~~-~~----~~~~l~~~L~~~~gI~v~pg----~~f~~~--~ 437 (470)
+.|++++..+ .-++ +.+++ |....... +.... .. -...+.+++.++..+.+.+- ..+... -
T Consensus 418 ~~~~~el~~~p~l~i-v~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~ 496 (522)
T TIGR03799 418 QQPDFELVTEPELCL-LTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTV 496 (522)
T ss_pred hCCCeEEecCCCccE-EEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcE
Confidence 9989987654 4455 44443 43211000 00000 00 01345555555544444421 112111 3
Q ss_pred cEEEEeec---CHHHHHHHHHH
Q 012124 438 CIRISYAA---SLTTLQAAVER 456 (470)
Q Consensus 438 ~iRls~~~---~~~~i~~~l~~ 456 (470)
.||++++. ++++++..++.
T Consensus 497 ~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 497 VFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 69999986 77888887664
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.7e-12 Score=120.59 Aligned_cols=333 Identities=15% Similarity=0.143 Sum_probs=210.6
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
+|||-+..-.-.+.+..++++.. +.-.|+.++....|.+.+++.+ | .+.++.|..+..+-.+++..++
T Consensus 43 ~IDLrSDTgT~apS~~m~aAM~~----GDD~Y~gdpSv~~Lee~vael~----G----~E~alpthqGRgaE~Il~~~~~ 110 (467)
T TIGR02617 43 FIDLLTDSGTGAVTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_pred EEECccCCCCCCCCHHHHHHHHc----CCcccccCchHHHHHHHHHHHh----C----CceEEECCCCchHHHHHHHhhc
Confidence 56666655554456777777775 5667988888899999999986 3 3467888878888888889998
Q ss_pred C-CCCeEEEcCC-------C-CCChHHHHHHcCCEEEEecCc--------CCCCCccCHHhHhhhccC----CceEEEEc
Q 012124 176 S-PGDEVIIPAP-------F-WVSYPEMARIADATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILC 234 (470)
Q Consensus 176 ~-~gd~Vlv~~p-------~-y~~~~~~~~~~g~~~~~v~~~--------~~~~~~~d~~~l~~~l~~----~~~~i~l~ 234 (470)
+ |||++.++.+ . |......+...|+.++.++.+ ......+|++.|++++++ ++-.+...
T Consensus 111 ~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~t 190 (467)
T TIGR02617 111 KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190 (467)
T ss_pred ccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeee
Confidence 8 7888886554 1 222234677899998876532 112245899999999974 22333222
Q ss_pred CCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEEeccc-c---cc------ccCCCCccccccc----CCCCCceEEEecc
Q 012124 235 SPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-E---HI------IYAPATHTSFASL----PGMWERTLTVNGF 299 (470)
Q Consensus 235 ~p~n-PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~-~---~~------~~~~~~~~~~~~~----~~~~~~~i~i~S~ 299 (470)
-.+| -.|+++|.+.++++.++|++| |+.++.|.+= . .| .+.+ .++..+ .. .-..+.-|+
T Consensus 191 lt~N~~GGqpvslenlr~V~~la~~~-GIplhLDgARl~nNA~fIk~rE~~a~~---~si~eI~rE~~~--~aDsvt~sl 264 (467)
T TIGR02617 191 ITCNSAGGQPVSLANLKAVYEIAKKY-DIPVVMDSARFAENAYFIKQREAEYKN---WSIEQITRETYK--YADMLAMSA 264 (467)
T ss_pred EEEecCCCEEeCHHHHHHHHHHHHHc-CCcEEEEhHHHHHHhhhhhhcchhhcC---CCHHHHHHHhhc--cCCEEEEEc
Confidence 1234 468899999999999999999 9999999751 1 11 1222 233222 11 112456679
Q ss_pred Ccccccc-cceeeEEEcCHH-HHHHHHHHhh-------hc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 012124 300 SKAFAMT-GWRLGYIAGPKH-FVAACNKIQS-------QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 300 sK~~~~~-G~r~G~~~~~~~-~~~~l~~~~~-------~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
||.++.| | |+++++++ +.+.+.+.+. .. ..+.+.-...+++.-|..+.. +++++.... ..++
T Consensus 265 sKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~-~~yl~~ri~----qv~y 336 (467)
T TIGR02617 265 KKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN-LDWLAYRIN----QVQY 336 (467)
T ss_pred CCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhccc-HHHHHHHHH----HHHH
Confidence 9998755 3 56666554 3333333221 11 123444455555555655422 455554443 4456
Q ss_pred HHHHhccCCCCeecCCCceEEEeeec----cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCC-CC--------
Q 012124 370 LVKSFGELEGVKMSEPQGAFYLFIDF----STYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAF-GD-------- 435 (470)
Q Consensus 370 l~~~L~~~~g~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f-~~-------- 435 (470)
|.+.|.+. |+.+.. .||.-++++. |+... .. -....++..|..+.||--.- |+.. +.
T Consensus 337 l~~~L~~~-Gvpi~~-~Gghav~iDa~~~lphip~---~~----fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~ 407 (467)
T TIGR02617 337 LVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLPHIPA---DQ----FPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQL 407 (467)
T ss_pred HHHHHHhC-CCcEEe-cCccEEEEehhhhCCCCCh---hh----CcHHHHHHHHHHHcCcceEeecceecccCCCCCccC
Confidence 66777666 888877 7777777653 33211 11 15678888888788885332 3221 11
Q ss_pred ---CCcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012124 436 ---DTCIRISYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 436 ---~~~iRls~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
-.-+||++.. +.+.++-..+++..+.++
T Consensus 408 ~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred CCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1369999986 888999999999888764
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=120.73 Aligned_cols=326 Identities=13% Similarity=0.142 Sum_probs=211.9
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC------CCCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG------FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~------~~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
.+.|+.|- ...|+.+++++.+.+.+. .... .-..-..++-+.+.+.+++.++++-+-+-++++.|++.+++
T Consensus 8 ~~~f~pGP--~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~e 85 (365)
T PLN02452 8 VFNFSAGP--ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFA 85 (365)
T ss_pred eEeeeCCC--CCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHH
Confidence 45565443 235888888888765331 1111 12334457777778888888886433344667799999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCC--CccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISEN--FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~--~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
.+...|+.+||++++..-++++-. +.++.+|...+..... +++ ..++++.++. .++.+.+.+++..-.||+.+
T Consensus 86 a~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~v~~~hnETstGv~~ 162 (365)
T PLN02452 86 AIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGK-DEKYTKIPSVSEWEL--TPDAKFVHICANETIHGVEF 162 (365)
T ss_pred HHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecC-CCCCCCCCChHHcCC--CCCCcEEEECCCCCCCcEec
Confidence 999999999999998887776644 5677787644333211 122 1356666532 34567777777777899964
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
.+ ++++. ++++|+|.+.+.. ..+..+..+ + + .+.|..|.+|.+| +|++++++++++++.
T Consensus 163 ~~--~~~i~-------~~~lvVDa~Ss~g----~~pidv~~~----~-v-~~~saqK~lGP~G--l~~v~vr~~~l~~~~ 221 (365)
T PLN02452 163 KD--YPDVG-------NVPLVADMSSNFL----SKPVDVSKY----G-V-IYAGAQKNVGPSG--VTIVIIRKDLIGNAR 221 (365)
T ss_pred Cc--ccccC-------CCeEEEECCcccc----CcccCHHHc----C-E-EEEecccccCCCC--eEEEEEcHHHHhhcc
Confidence 31 32321 4788999988752 222333322 2 2 3468999999777 799999998876643
Q ss_pred HH-------h-----hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCC-ee-cCC--Cc
Q 012124 325 KI-------Q-----SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGV-KM-SEP--QG 387 (470)
Q Consensus 325 ~~-------~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~-~~-~~~--~~ 387 (470)
.. + .....+++....+++..+|+.-. ++ .++.+.++++++.+++++.|++.+|+ .. ..+ .+
T Consensus 222 ~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~--~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs 299 (365)
T PLN02452 222 PITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLL--AQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRS 299 (365)
T ss_pred cCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhC
Confidence 21 0 01113566667777777776411 22 48889999999999999999987676 11 111 34
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.+.+.+.+++. ....+|.+.+.++ |+...+|..- -+.+|+|+-. +.++++.+++-++++-++
T Consensus 300 ~~~vsF~~~~~-----------~~~~~f~~~~~~~-g~~~~~G~r~--~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 300 LMNVPFTLGGS-----------ELEAEFVKEAAKA-GMVQLKGHRS--VGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CeEEEEEcCCc-----------hhHHHHHHHHHHC-CCcccCCccc--cCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 55666777653 1567788877554 9999998753 2349999876 889999988888887654
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-12 Score=117.75 Aligned_cols=342 Identities=14% Similarity=0.130 Sum_probs=214.1
Q ss_pred hcCCCeEEccCCCCCCCC---hHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 91 QAGVSVIRLAAGEPDFDT---PVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~---~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
++|+.++|+-.|...... +|++.+++.+++.. ....|.. .-..+|-+++++.+- -+-..++++|+++
T Consensus 47 e~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~-~pi~~~Ae~L~s~~P------~~l~~vfF~nsGs 119 (442)
T KOG1404|consen 47 EEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLN-PPIHDLAEALVSKLP------GDLKVVFFVNSGS 119 (442)
T ss_pred CCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeeccccC-CcHHHHHHHHHHhCC------CCceEEEEecCCc
Confidence 467778888888754332 78889999888854 2344532 334566666666542 2335689999999
Q ss_pred HHHHHHHHHhc---CCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCcCC--------------CCCccC---------H
Q 012124 165 QSILQAVLAVC---SPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRIS--------------ENFLLD---------P 217 (470)
Q Consensus 165 ~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~--------------~~~~~d---------~ 217 (470)
+|.+++++... +.-| ++--.-+|++.... +...|.....-+.... +-|+=+ .
T Consensus 120 EANelal~mar~Yt~~~d-iIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a 198 (442)
T KOG1404|consen 120 EANELALKMARLYTGNLD-IIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYA 198 (442)
T ss_pred hHHHHHHHHHHHhcCCce-EEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHH
Confidence 99998887642 3334 44446677665433 3333333322222100 000001 1
Q ss_pred HhHhhhcc---C-CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc
Q 012124 218 KVLESKLT---E-KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 292 (470)
Q Consensus 218 ~~l~~~l~---~-~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (470)
+++++.+. + .+.+++..+.+--.|+ .+++..+++..+.|+++ |.+.|.||+...|...| .++.+.. ++.
T Consensus 199 ~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~-Ggl~IaDEVqtGfGRtG----~~wgfe~-h~v 272 (442)
T KOG1404|consen 199 KELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR-GGLFIADEVQTGFGRTG----HMWGFES-HGV 272 (442)
T ss_pred HHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc-CCEEEehhhhhcccccc----ccccccc-cCC
Confidence 34444441 2 3444455555666675 67888999999999999 99999999999865443 5666654 355
Q ss_pred eEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 371 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 371 (470)
+=-|-|++|.+| .|+++|.++..+++.+-+.+.. ...+++.+++...++.+.|+-- ..+++.+..++.-.+|.
T Consensus 273 ~PDIvTmAKgiG-nG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vi-----kee~LqE~aa~vG~yl~ 346 (442)
T KOG1404|consen 273 VPDIVTMAKGIG-NGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVI-----KEENLQENAAEVGSYLL 346 (442)
T ss_pred CccHHHHHhhcc-CCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHH-----HHHhHHHHHHHHHHHHH
Confidence 556889999999 9999999999999999988765 6778889999988888887631 12333444444555566
Q ss_pred HHhccCC-CCeec--CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 372 KSFGELE-GVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 372 ~~L~~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
+.|.++. +..++ ...-|+++-+++-+... ++..-.+ .....+.+.++ +.|+.+--|..++. .+||+... +
T Consensus 347 ~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~-~~~pp~~-~~~~~i~~~ck-e~Gvlvg~g~i~G~--vfriaPPlciT 421 (442)
T KOG1404|consen 347 EKLAALKDKHPIIGDVRGRGLMLGVELVSDKS-EPKPPAT-AEGAVIGEQCK-ELGVLVGKGGIHGN--VFRIAPPLCIT 421 (442)
T ss_pred HHHHHHhhcCCceeecccceeEEEEEEecccC-CCCCcch-HHHHHHHHHHH-HhCeeeecccccce--EEEecCCeecc
Confidence 6665541 22222 22447777777644310 0000000 02345556665 45999977776654 99998654 8
Q ss_pred HHHHHHHHHHH
Q 012124 447 LTTLQAAVERI 457 (470)
Q Consensus 447 ~~~i~~~l~~l 457 (470)
.+|++-+++..
T Consensus 422 ~edi~f~~~~~ 432 (442)
T KOG1404|consen 422 KEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHH
Confidence 89986666644
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-11 Score=130.76 Aligned_cols=347 Identities=14% Similarity=0.090 Sum_probs=204.0
Q ss_pred CeEEccCCC--CCCC--ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGE--PDFD--TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~--~~~~--~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.++|+..+- ..+. .++++.+++.+++.+-.+.. ...-..+-...+++.|.+..+.+ ..+++++++++++|++.+
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~-~~~~~hepa~~LAe~L~~~~~~~-~l~rVffs~sGSeAvE~A 443 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVM-FPENVHEPALRAAELLLGGPGKG-WASRVFFSDNGSTAIEVA 443 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccc-cCccCCHHHHHHHHHHHhccCCC-CCCEEEECCchHHHHHHH
Confidence 466666553 2233 37889999999987632211 11223456666777776422100 136899999999999998
Q ss_pred HHHhcC---------------------CCCeEEEcCCCCCChHHHHHHcCCE---------E------EEecCcC----C
Q 012124 171 VLAVCS---------------------PGDEVIIPAPFWVSYPEMARIADAT---------P------VILPTRI----S 210 (470)
Q Consensus 171 ~~~l~~---------------------~gd~Vlv~~p~y~~~~~~~~~~g~~---------~------~~v~~~~----~ 210 (470)
++...+ ...+|+...-+|++....+-..+.. . ..++... .
T Consensus 444 lKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~ 523 (817)
T PLN02974 444 LKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRN 523 (817)
T ss_pred HHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcccccc
Confidence 885421 1246888889998855433322210 0 0011000 0
Q ss_pred --------CC-----------Cc-----cC------------HHhHhhhcc--------CCceEEEEcC-CCCCcccC-C
Q 012124 211 --------EN-----------FL-----LD------------PKVLESKLT--------EKSRLLILCS-PSNPTGSV-Y 244 (470)
Q Consensus 211 --------~~-----------~~-----~d------------~~~l~~~l~--------~~~~~i~l~~-p~nPtG~~-~ 244 (470)
.+ |. .| .+.+++.+. +++.++++.. .+.-.|+. .
T Consensus 524 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~ 603 (817)
T PLN02974 524 GRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLI 603 (817)
T ss_pred ccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccC
Confidence 00 00 00 144555553 2455666644 36767875 5
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAA 322 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~ 322 (470)
+++.+++|.++|++| |+++|.||++..|...|... .......++ |-+++|.++ .| +++|.+++.+++.+.
T Consensus 604 ~~~yl~~lr~lc~~~-gilLI~DEV~TGfGRtG~~fa~e~~gv~PD------Ii~~gKgLt-gG~~Plaa~l~~~~I~~~ 675 (817)
T PLN02974 604 DPLFQRALVQVCRSR-KIPVIFDEVFTGLWRLGVESAWELLGCKPD------IACYAKLLT-GGLVPLAATLATEEVFEA 675 (817)
T ss_pred CHHHHHHHHHHHHHh-CCEEEEeecccCCCcccchhhHHhcCCCCC------EEeeccccc-CCCCccEEEEEcHHHHHh
Confidence 789999999999999 99999999999874433211 111122222 555889998 89 699999999999998
Q ss_pred HHH------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH----HHhccCCCCeecCCCceEEEe
Q 012124 323 CNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV----KSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 323 l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+.. +....+++.++++..++.+.|+.-.. ++....+.+.-++..+.+. +.|.+.|.+.-.. .-|+++.
T Consensus 676 f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~-~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VR-g~Gl~~~ 753 (817)
T PLN02974 676 FRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD-PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVV-SLGTVLA 753 (817)
T ss_pred hccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEE-eeeeEEE
Confidence 852 12345788999999999888764211 2222233333333333333 3344444332222 3366677
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+++.+.... .+. ...-...+.+.++.+.||.++|. .+.+++.... +++++++.+++|.+.+
T Consensus 754 iel~~~~~~--~~~-~~~~a~~v~~~~~~~~Gl~~r~~-----Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 754 LELDAEGSG--SGY-SSLYARSVVRRLRREDGIYARPL-----GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEecCCcc--ccc-chHHHHHHHHHHHHhCCEEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 777432100 000 00013456677762459999884 2578876544 8999999999998765
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-11 Score=120.07 Aligned_cols=354 Identities=13% Similarity=0.058 Sum_probs=206.0
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|-.+|-. ...- .+++.+++.+++.+-.+.+. ...+.+ -..+|+.|.+..+- -+-++|++++|+++++
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P--a~~LA~~L~~~aP~-~~l~~vFf~~sGSeAv 118 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP--AIELAEKLAELAPE-GGLDHVFFTDSGSEAV 118 (449)
T ss_pred CCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCch--HHHHHHHHHHhCCC-CCccEEEEeCCchHHH
Confidence 5666777666642 2222 68899999999876221110 111222 34444444432221 1247999999999999
Q ss_pred HHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cC-------------CEEEEecCcCC------CCCc----c
Q 012124 168 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRIS------ENFL----L 215 (470)
Q Consensus 168 ~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g-------------~~~~~v~~~~~------~~~~----~ 215 (470)
+.+++... +|. .+++.-..+|++-.-..-+ .| ..+..+|.... +.+. -
T Consensus 119 EtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~ 198 (449)
T COG0161 119 ETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE 198 (449)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHH
Confidence 99998753 343 3477788888864322111 11 11222222210 1111 1
Q ss_pred CHHhHhhhccC----CceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc-cccCC
Q 012124 216 DPKVLESKLTE----KSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF-ASLPG 288 (470)
Q Consensus 216 d~~~l~~~l~~----~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~-~~~~~ 288 (470)
..++|++.+.. ++.++++... +--+|+ ++++..++++.++|++| |+++|.||+-..|-..|.....- ..+.+
T Consensus 199 ~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky-~ILlI~DEV~tGFGRTG~~FA~e~~gi~P 277 (449)
T COG0161 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY-GILLIADEVATGFGRTGKMFACEHAGIVP 277 (449)
T ss_pred HHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc-CcEEEeecceeCCCcCchhhhhhhcCCCC
Confidence 25667777732 4445555333 455786 55777899999999999 99999999998865544321110 11222
Q ss_pred CCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH-----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+ +-+++|.+...=+++|.+++.+++.+.+..- ....+++.++++..++.+.|+--+. +.++++.++.-
T Consensus 278 D------i~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~-e~l~~~~~~~~ 350 (449)
T COG0161 278 D------ILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEE-EDLLERVAEIG 350 (449)
T ss_pred C------eeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 2 5557899964557888899999999888653 3445778899998888887764211 34455544433
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 443 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~ 443 (470)
....+.|.+.|.+.|.+.= ...-|+..-+++....+. ...+ ...-...+...+.++ |+.++|.. +.+=++.
T Consensus 351 ~~l~~~L~~~l~~~p~Vgd-VR~~Gli~~iElv~d~~t-~~~f-~~~~~~~~~~~~~e~-Gl~iRp~g-----~~i~~~P 421 (449)
T COG0161 351 AYLQAGLQAALADHPLVGD-VRGLGLIGAIELVADKAT-KTPF-EARVGARVRAAALER-GLLIRPLG-----DVIYLMP 421 (449)
T ss_pred HHHHHHHHHhcccCCcEEE-eeccceEEEEEEeccccc-ccch-hhhHHHHHHHHHHHC-CeEEeecC-----CEEEEcC
Confidence 3333344433333332211 124467677777543210 0000 000134555555555 99999962 2444443
Q ss_pred ec--CHHHHHHHHHHHHHHHHhhC
Q 012124 444 AA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 444 ~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.. +++++++.++++++.+++..
T Consensus 422 Pliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 422 PLIITREEIDELVDALREALDETL 445 (449)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHH
Confidence 33 99999999999999998754
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=112.23 Aligned_cols=331 Identities=17% Similarity=0.208 Sum_probs=215.5
Q ss_pred hcCCCeEEccCCCCCCCChHHHHHHHHHHH---HcC-CCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 91 QAGVSVIRLAAGEPDFDTPVLIAEAGINAI---REG-FTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~---~~~-~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
..+.++|.|..+.....++....+....+. .+. ...+. -.....++-+.+...+....| ..+++++++.+++-
T Consensus 27 ~lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiG--A~~~Evvv~dtts~ 104 (407)
T COG3844 27 ALPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIG--ARAGEVVVTDTTSI 104 (407)
T ss_pred cCCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhc--CCCCceEEeCCcch
Confidence 345578888887766544333333322222 221 11111 123445566667777766556 57789999999999
Q ss_pred HHHHHHHHhc--CCCCeEEEcC-CCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCC
Q 012124 166 SILQAVLAVC--SPGDEVIIPA-PFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 238 (470)
Q Consensus 166 al~~~~~~l~--~~gd~Vlv~~-p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~n 238 (470)
.++.++.+.+ .+|++|++++ -+|+.-. ..+...|.. +.+ ...+.++.+++++++++.++++++.++
T Consensus 105 nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~----~~~~~P~~~~~~~~dd~AvV~L~~V~y 177 (407)
T COG3844 105 NLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL----EGVIAPRALEEAITDDVAVVLLSHVNY 177 (407)
T ss_pred HHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc----eeeeChHHHHHhhccceEEEEeccccc
Confidence 9998888765 4578888765 4555433 333444432 111 122577899999999999999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPK 317 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~ 317 (470)
-||..++ +.+|-++++++ +++++-|=+++.. .-+.. +.. .+-.+-|++-.|-+ |-||-..|..+.++
T Consensus 178 ~TGql~d---m~aiT~~AH~~-galv~wDLAHsaG----avp~~---Lh~-~gaDfaigcsyKYLNgGPGapa~l~v~~~ 245 (407)
T COG3844 178 KTGQLLD---MRAITALAHQH-GALVGWDLAHSAG----AVPVD---LHA-AGADFAIGCSYKYLNGGPGAPAGLFVAPR 245 (407)
T ss_pred cccceee---HHHHHHHHHhc-CceEEeehhcccC----Cccee---ecc-cCCCeeeeeeceeccCCCCCceeEEeccc
Confidence 9999999 88999999999 9999999999862 22222 222 45567888888988 23665444444433
Q ss_pred HHHHHH-----------------------HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 318 HFVAAC-----------------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 318 ~~~~~l-----------------------~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
..+.. ..+.+.....++.++..++...|+-.. +-.+.++|++--...+++.+.+
T Consensus 246 -h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa--~~~i~~lR~kSlaLTd~fieLv 322 (407)
T COG3844 246 -HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFA--DVDITELRKKSLALTDYFIELV 322 (407)
T ss_pred -cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhh--hcCHHHHHHhhhHHHHHHHHHH
Confidence 22211 112233333455555555555555421 2236777777777788888887
Q ss_pred ccC-C--CCeecCCCc----eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--
Q 012124 375 GEL-E--GVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-- 445 (470)
Q Consensus 375 ~~~-~--g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-- 445 (470)
+.. + ++++..|.. |-.+-+..| ...++.+.|.++ ||.. .|..++-+|+.|+.
T Consensus 323 Ea~~~~~~l~l~tPr~~~~rGsqvS~~hp--------------~~~~V~qaLi~r-GVig----D~R~P~vlRfgftPlY 383 (407)
T COG3844 323 EARCEYYGLTLVTPRAHEERGSQVSLYHP--------------HGYQVMQALIDR-GVIG----DFREPDVLRFGFTPLY 383 (407)
T ss_pred HhccccCCcEEeccchhhhccceeeEecC--------------cHHHHHHHHHHc-Cccc----cccCCCeeeecCccce
Confidence 753 2 566666643 555666666 467888888876 8853 46778999999986
Q ss_pred -CHHHHHHHHHHHHHHHHhh
Q 012124 446 -SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 446 -~~~~i~~~l~~l~~~l~~~ 464 (470)
+-.++-.+++.|++++++.
T Consensus 384 ~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 384 VSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred echhHHHHHHHHHHHHHHhh
Confidence 7789999999999999864
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-12 Score=129.25 Aligned_cols=169 Identities=11% Similarity=0.169 Sum_probs=118.5
Q ss_pred CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEec
Q 012124 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 206 (470)
Q Consensus 127 y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 206 (470)
...+.|...--+..+.. .|| .....++++|++.++..++.+++.+||.|+++.-||-+..+.+...|+.+++++
T Consensus 190 Ll~~~G~i~eAe~~AA~---~fg---Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~ 263 (714)
T PRK15400 190 LLDHSGPHKEAEEYIAR---VFN---ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFR 263 (714)
T ss_pred CCCCChHHHHHHHHHHH---HhC---CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEec
Confidence 33445544333333333 245 335788999999999999999999999999999999999999999999999997
Q ss_pred CcCCCCCc----cC-----HHhHhhhccC--Cce---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc
Q 012124 207 TRISENFL----LD-----PKVLESKLTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272 (470)
Q Consensus 207 ~~~~~~~~----~d-----~~~l~~~l~~--~~~---~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~ 272 (470)
... +.++ ++ .+.+++++.. +.+ .+++++|++ -|.+++ +++|++.|+.+ + |++||+|+.
T Consensus 264 P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~-~--ilvDEAwga 335 (714)
T PRK15400 264 PTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVK-S--IHFDSAWVP 335 (714)
T ss_pred ccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCC-C--EEEEccchh
Confidence 654 2332 34 7889888854 223 678888855 799999 77888888887 6 688999985
Q ss_pred c-ccCCCC--cccccccCCCCCceEEEeccCcccccccceee
Q 012124 273 I-IYAPAT--HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 273 ~-~~~~~~--~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
. .|...- ..++.......+.++++.|.+|.+ +++.-+
T Consensus 336 h~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL--~alTQa 375 (714)
T PRK15400 336 YTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLL--AAFSQA 375 (714)
T ss_pred hhccCcccCCcChhhcCCCCCCceEEEEchhhcc--cchhHH
Confidence 3 333211 112221111125679999999998 454433
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=132.52 Aligned_cols=326 Identities=15% Similarity=0.142 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhcCCCe-EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----cCcHHHHHHHHHHHHHHcCCCCC
Q 012124 80 VAITDQATALAQAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
.++.+..+.+.++++.. ..++.|.-+.-.|+.+.+.+.+.- ...+.|+|. +|..+..-.....+.+..| ++
T Consensus 61 ~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~-~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG--~~ 137 (954)
T PRK05367 61 AEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENP-AWYTAYTPYQPEISQGRLEALLNFQTMVADLTG--LE 137 (954)
T ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCc-chhhccCCCChHHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 34555556666555431 234555555445666655444421 114556653 5777666666666766667 46
Q ss_pred CCcEEEecChHHHHHHHHHHh-cCC--CCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 154 PDQILVSNGAKQSILQAVLAV-CSP--GDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l-~~~--gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
..|+.+..+++.+.+.++.++ ..+ +|+|++++..||.....+ +..|++++.++.+.+ ++ .+
T Consensus 138 ~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~--------~~ 205 (954)
T PRK05367 138 IANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD--------HD 205 (954)
T ss_pred hhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC--------cc
Confidence 789999999999999888876 345 489999999999887654 568999999987421 11 22
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc----
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA---- 302 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~---- 302 (470)
++.++++.+| |-+|.+.+ +++|+++|+++ |+++++|.....+... .+ +++.+-.|+++|..|.
T Consensus 206 ~~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~-Gal~~vda~~~Al~~l----~~----pge~GaDi~vgs~qkfg~P~ 272 (954)
T PRK05367 206 DVFGVLLQYP-GTSGEVRD---YTALIAAAHAR-GALVAVAADLLALTLL----TP----PGEMGADIAVGSAQRFGVPM 272 (954)
T ss_pred cEEEEEEecC-CCCeeecc---HHHHHHHHHHc-CCEEEEEehhhhccCC----CC----hhhcCCCEEEeeCcccCCCC
Confidence 4444555554 66999998 89999999999 9999998644222111 11 1224556999999987
Q ss_pred -cccccceeeEEEcCHHHHHHHH-H---------------------------HhhhccCCCChHHHHHHHH-HHh-cCCC
Q 012124 303 -FAMTGWRLGYIAGPKHFVAACN-K---------------------------IQSQFTSGASSISQKAGVA-ALG-LGYA 351 (470)
Q Consensus 303 -~~~~G~r~G~~~~~~~~~~~l~-~---------------------------~~~~~~~~~~~~~q~a~~~-~l~-~~~~ 351 (470)
+|-| -.|++.+.+++.+.+. . .+...+.|++.....+.+. ++. .
T Consensus 273 g~GGP--~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~--- 347 (954)
T PRK05367 273 GFGGP--HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYH--- 347 (954)
T ss_pred CCCCC--CEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHH---
Confidence 4434 4899999888776652 0 0001111111111111111 111 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012124 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430 (470)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg 430 (470)
+...++++.++...+.+++.+.|++. |+++..+. .+. +.++++. +..++.++|+++ ||.+..
T Consensus 348 g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~~~f~~-~~~~~~~-------------~~~~i~~~l~~~-gi~~~~- 410 (954)
T PRK05367 348 GPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHDSFFDT-LTVEVGG-------------DAAAVLARALAA-GINLRR- 410 (954)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCCCCCCe-EEEeCCC-------------CHHHHHHHHHHC-Cceecc-
Confidence 25568888888888999999999774 77764331 122 2233331 678899998766 887732
Q ss_pred CCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 431 DAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 431 ~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
. .++.+|+|+.. ++++|+.+++.|.
T Consensus 411 --~-~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 411 --V-DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred --c-cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 1 25689999986 8899999999986
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=131.16 Aligned_cols=332 Identities=11% Similarity=0.128 Sum_probs=201.4
Q ss_pred HHHHHHHHHHhcCCCeEE-ccCCCCCCCChHHHHHHHHHHHH--cCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCC
Q 012124 81 AITDQATALAQAGVSVIR-LAAGEPDFDTPVLIAEAGINAIR--EGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPD 155 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~-l~~g~~~~~~~~~~~~a~~~~~~--~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~ 155 (470)
++.+....+...++...+ .+.|.-+.-.|+.+.+++.+... ...+-|.+. +|..+........+.+..| ++++
T Consensus 89 e~~~~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG--~~~a 166 (993)
T PLN02414 89 QMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTG--LPMS 166 (993)
T ss_pred HHHHHHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhC--CChh
Confidence 444555555555543222 23344444457777677766543 223444432 5655544455555555556 5788
Q ss_pred cEEEecChHHHHHHHHHHh-cCCC--CeEEEcCCCCCChHHHHH----HcCCEEEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 156 QILVSNGAKQSILQAVLAV-CSPG--DEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l-~~~g--d~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
++.++.+++.+.+.++.++ +.+| |+|++.+..|+.+...++ ..|++++.++.+.. + ...+.+
T Consensus 167 naSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~~~~v 235 (993)
T PLN02414 167 NASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YSSGDV 235 (993)
T ss_pred hEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cccCce
Confidence 9999999999999888776 3544 789999999999876654 46999999987421 1 111123
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc---cc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF---AM 305 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~---~~ 305 (470)
..+++..| |-+|.+.+ +++|+++|+++ |+++++ .++.- ... ...+.. ..+-.|++++..|.. |.
T Consensus 236 ~~vlvq~P-~~~G~v~d---v~~I~~~ah~~-GaL~iV-aad~l-al~--~l~~pg----e~GADi~vgsgqKwg~P~G~ 302 (993)
T PLN02414 236 CGVLVQYP-ATDGEVLD---YAEFVKNAHAN-GVKVVM-ATDLL-ALT--MLKPPG----EWGADIVVGSAQRFGVPMGY 302 (993)
T ss_pred EEEEEecC-CCCeEEcC---HHHHHHHHHHc-CCEEEE-EECHH-Hhc--CCCCHh----hccCcEEEECCCccccCCCC
Confidence 33433333 34999988 88999999999 999998 43322 111 111122 235568899988876 23
Q ss_pred ccceeeEEEcCHHHHHHHH-HHhh-----------------------hccCCCChHHHHHHHHHHhc---CCCChHHHHH
Q 012124 306 TGWRLGYIAGPKHFVAACN-KIQS-----------------------QFTSGASSISQKAGVAALGL---GYAGGEVVSK 358 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~-~~~~-----------------------~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~ 358 (470)
.|-+.|++.+.+++.+.+- ++.. .-....+.-...++.+.+.. ...+...+++
T Consensus 303 GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~ 382 (993)
T PLN02414 303 GGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 382 (993)
T ss_pred CCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHH
Confidence 4555899999887765431 0000 00111222122222222211 0002345778
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
+.++..++..++.+.|... |+++..+ ..+. +.++++ +..++.++|.++ ||.+..-. ++
T Consensus 383 Ia~ri~~la~~l~~~L~~~-G~~~~~~~~f~~-vt~~~~--------------~~~~v~~~L~~~-gI~l~~~~----~~ 441 (993)
T PLN02414 383 IAQRVHGLAGVFAAGLKKL-GFQVQSLPFFDT-VKVKCS--------------DADAIADAAAKV-GINLRVVD----AN 441 (993)
T ss_pred HHHHHHHHHHHHHHHHhhc-CCccCCCCCcCe-EEEecC--------------CHHHHHHHHHHC-CCeeEEec----CC
Confidence 8888888999999999775 7766433 1222 223443 457888888766 88665421 46
Q ss_pred cEEEEeec--CHHHHHHHHHHHHH
Q 012124 438 CIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
.+|+|+.. +++||+.+++.|..
T Consensus 442 ~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 442 TVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred eEEEEeeccCCHHHHHHHHHHHcc
Confidence 79999986 88999999999863
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.2e-12 Score=113.44 Aligned_cols=335 Identities=14% Similarity=0.132 Sum_probs=212.7
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
.|+.++||-.+... .. .++.+++++.++...-. -....-+..+--..++|+...+|. +.++-++.+.+|.+
T Consensus 57 eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLt--lssrafYnd~~~~f~~~vt~lf~~----~kvlpmnTGaEa~E 130 (427)
T KOG1402|consen 57 EGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLT--LSSRAFYNDVLGEFAEYVTKLFGY----DKVLPMNTGAEAVE 130 (427)
T ss_pred CccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhh--hhhHHHhhhhHHHHHHHHHHhcCc----ceeeecccchhHHH
Confidence 45566777655432 22 37899999999886411 111122345666777777776663 57888888899999
Q ss_pred HHHHHhc------C--CCC--eEEEcCCCCCChHH----------HHHHcCC----EEEEecCcCCCCCccCHHhHhhhc
Q 012124 169 QAVLAVC------S--PGD--EVIIPAPFWVSYPE----------MARIADA----TPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 169 ~~~~~l~------~--~gd--~Vlv~~p~y~~~~~----------~~~~~g~----~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
.+++... + |.| .|+...-+|++-.. ..+..|- .+..+|. -|.++|+.++
T Consensus 131 ta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y-------~d~eale~~l 203 (427)
T KOG1402|consen 131 TACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY-------GDAEALEVAL 203 (427)
T ss_pred HHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc-------CCHHHHHHHh
Confidence 8887643 1 332 33333444443221 1111111 1222232 1889999999
Q ss_pred cC-CceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 225 TE-KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 225 ~~-~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++ +.+++++...|-..|++ .|+..+++..++|.+| |+++|.||++..+...|.- ...........++. |.|.
T Consensus 204 ~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-nvl~I~DEvQTGl~RTGk~--la~d~env~PDivi---lgKa 277 (427)
T KOG1402|consen 204 KSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-NVLLIADEVQTGLARTGKL--LACDYENVRPDIVI---LGKA 277 (427)
T ss_pred cCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-cEEEEehhhhhcccccCcE--EEeehhhcCCCeEE---Eecc
Confidence 65 45555555558888875 4667899999999999 9999999999987655431 11112221122333 5699
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----C
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----E 378 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 378 (470)
++-.=++++.+++.++++..++......+++.++++..++.++|+- -.-+++.++.+..-+.|++.|+++ |
T Consensus 278 lSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalev-----i~eekL~era~~lG~~l~~~L~~l~~~~p 352 (427)
T KOG1402|consen 278 LSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEV-----IVEEKLVERAAKLGEILRDQLNKLQKKFP 352 (427)
T ss_pred ccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8623367899999999999888777788899999999999888873 223455555666667777777765 3
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~ 456 (470)
++--....-|++..+.+.... .. ..++-+++-.|. +.|++.-|- ..+-||++... ++++++++++.
T Consensus 353 ~~v~~VRGrGl~~ai~i~~~~---~~----~~~aw~~cl~lk-~~g~LAkpt----H~~IiRfaPPL~I~e~dl~eg~e~ 420 (427)
T KOG1402|consen 353 HVVKEVRGRGLLNAIVINPSK---TS----GQDAWDVCLALK-ENGLLAKPT----HGNIIRFAPPLVISEEDLREGIEA 420 (427)
T ss_pred chhheeeccceEEEEEecccc---cc----chhHHHHHHccc-ccccccCCC----CCCeEEecCCcccCHHHHHHHHHH
Confidence 321112234666666653210 01 115667776665 448877663 25689998765 99999999999
Q ss_pred HHHHHH
Q 012124 457 IKKGLL 462 (470)
Q Consensus 457 l~~~l~ 462 (470)
|++.+.
T Consensus 421 i~k~i~ 426 (427)
T KOG1402|consen 421 IEKTIA 426 (427)
T ss_pred HHHHhc
Confidence 988764
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-12 Score=119.92 Aligned_cols=341 Identities=20% Similarity=0.227 Sum_probs=224.5
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcC-------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~-------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+++++|.+.+ ..+...+.+++.+...+++- ..-|+...-...|.+.||+++. .++.|+...|-
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G-------~E~aivYs~gF 164 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG-------TEDAIVYSYGF 164 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC-------Ccceeeecccc
Confidence 566788887766 34555778888877777651 2447666667788999999873 45677777776
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCc------------eE-
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS------------RL- 230 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~------------~~- 230 (470)
+ ++..++.++.+.||.|.+.+-........++...-.++....+ |.+.++..+.+.+ +-
T Consensus 165 ~-ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrf 236 (467)
T KOG1358|consen 165 S-TIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRF 236 (467)
T ss_pred c-hhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccceEE
Confidence 5 4666788999999999999888777888888888787777642 6677766663322 33
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC--CCcccccccCCCCCceEEEeccCcccccccc
Q 012124 231 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 231 i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~--~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
|++..---+||...+ +.+|+++..+| .+.||.||.|+....+. .+.......+. .+-.++++|+.-+++..|
T Consensus 237 iv~EGl~~N~g~i~p---l~~iv~lk~Ky-k~RvildEs~SfG~lg~~GrGvteH~~v~~-~~iDiv~~sm~~alas~G- 310 (467)
T KOG1358|consen 237 IVVEGLYANTGDICP---LPEIVKLKNKY-KFRVILDESLSFGVLGKTGRGVTEHFGVPI-TDIDIVTASMETALASGG- 310 (467)
T ss_pred EEEEeeccCCCcccc---cHHHHHHHhhh-eEEEEEecccccccccccCccccccCCCCc-cceeeeeecccccccccC-
Confidence 334444557999999 88999999999 99999999999755543 22233333332 466789999999987555
Q ss_pred eeeEEEcCHHH--HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 309 RLGYIAGPKHF--VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 309 r~G~~~~~~~~--~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
||.++..-+ .+++......++-+.++....++..++.- .++-.++.+.++.....+.+.|+...++.+....
T Consensus 311 --gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i----~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~ 384 (467)
T KOG1358|consen 311 --GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI----EEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSP 384 (467)
T ss_pred --ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHH----HhhCcchhhhhhccccccchhhhcCCceEEecCc
Confidence 888774322 23333333344455666666666666653 3444445666666666777777776567665443
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC------CCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF------GDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f------~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
-...+.+.+.+..+.... ...--++++++.+.+ ++.+...... -.+..+|+++.. ++++++.+...|+
T Consensus 385 ~SPi~hl~l~~~~~s~e~---e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik 460 (467)
T KOG1358|consen 385 ESPIIHLQLERSYGSREK---EEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIK 460 (467)
T ss_pred CCceeeeeecccccchHH---HHHHHHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 333355565442111000 000124556666666 7777654332 124589999987 9999999999998
Q ss_pred HHHHh
Q 012124 459 KGLLT 463 (470)
Q Consensus 459 ~~l~~ 463 (470)
++...
T Consensus 461 ~~~~~ 465 (467)
T KOG1358|consen 461 EVASA 465 (467)
T ss_pred HHHHh
Confidence 87654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-13 Score=129.59 Aligned_cols=239 Identities=17% Similarity=0.170 Sum_probs=159.3
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|. ..+.. ++.+.+++.+++....... ......+....+++.+.+..+. ..+++++++++++|++
T Consensus 14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAve 90 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVS-FSGFTHPEAAELAEKLAELFPG--GLDRVFFANSGSEAVE 90 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCS-TTTSEEHHHHHHHHHHHHHSST--TEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCccceecCCCccccchhHHHHhhhccccc-ccceeccchhhhhhhhhhcccc--ccceeeeccCchHHHH
Confidence 567889998774 33333 6899999999887643222 2444567778888888776632 4479999999999999
Q ss_pred HHHHHhc-------CCC-CeEEEcCCCCCChHHHHHHc-C------------CEEEEecCcCCCCCccCHHh--------
Q 012124 169 QAVLAVC-------SPG-DEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISENFLLDPKV-------- 219 (470)
Q Consensus 169 ~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~d~~~-------- 219 (470)
.+++... .++ ..|+...-+|++........ + ..+..+|.. ++..
T Consensus 91 ~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~ 163 (339)
T PF00202_consen 91 AALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP-------DPAADEEEQACL 163 (339)
T ss_dssp HHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT-------CHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC-------ccchhhhHHHHH
Confidence 9998765 233 78888899999865432221 1 133445542 2222
Q ss_pred --Hhhhc----cCCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCC
Q 012124 220 --LESKL----TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWE 291 (470)
Q Consensus 220 --l~~~l----~~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~ 291 (470)
+++.+ .+++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..+...+... .....+.++
T Consensus 164 ~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gRtG~~~a~~~~gv~PD-- 240 (339)
T PF00202_consen 164 NALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREH-GILLIADEVQTGFGRTGKFFASEHYGVDPD-- 240 (339)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHT-T-EEEEEETTTTTTTTSSSSGHHHHTSSSS--
T ss_pred HHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccc-ccceecccccccccccCCccceecccccCc--
Confidence 22222 345667777555555564 56788999999999999 99999999999874333211 111223332
Q ss_pred ceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 348 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 348 (470)
+-+|+|.++ .|+.+|.+++++++.+.+.......+++.+++...++.+.|+.
T Consensus 241 ----iv~~gK~l~-gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 241 ----IVTFGKGLG-GGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp ----EEEEEGGGG-TTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred ----ccccccchh-hhhhcccccccchhhccccccccccccccchHhhhhhhhHHHh
Confidence 334679998 8899999999999998775555556777889998888888764
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-11 Score=113.69 Aligned_cols=324 Identities=11% Similarity=0.046 Sum_probs=205.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcC------CCCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREG------FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~------~~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
++|+.|-- ..|+++.+++.+.+.+. .... .-..-..++-+.+.+.+++.++++-+.+=++++.|++.++..
T Consensus 6 ~nF~aGPa--~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea 83 (364)
T PRK12462 6 LNFSGGPG--ALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSM 83 (364)
T ss_pred ceecCCCc--CCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHH
Confidence 55655532 34788888877766541 1111 122345667777778888888875333334566679999999
Q ss_pred HHHHhcCCCCeEE-EcCCCCCChH--HHHHHcCCEEEEecCcCC--CCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 170 AVLAVCSPGDEVI-IPAPFWVSYP--EMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 170 ~~~~l~~~gd~Vl-v~~p~y~~~~--~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
+...|+.+||+++ +..-++++-. ..++..| ++..+..... -+..++++.+ .+.++.+.+.+++..-.||+.+
T Consensus 84 ~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~ 160 (364)
T PRK12462 84 IPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQF 160 (364)
T ss_pred HHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEec
Confidence 9999999999665 5555555433 4556666 4444432111 1233556665 2334567777777667899988
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+ ++.+.+ +.++|+|-+-+.+. .+..+..+ .+++.+.-|.+|.|| ++.++..++.+++..
T Consensus 161 ~--------~~~~~~-~~llvvD~sS~~~s----~pid~~~~------dvi~agsQKnlgP~G--ltvvivs~~al~~~~ 219 (364)
T PRK12462 161 P--------DAAGLP-DSPLIADMSSDFMS----RPFDVEAY------GMVYAHAQKNLGPAG--VTVAIIRRALLERVP 219 (364)
T ss_pred C--------cccccC-CCeEEEEcCchhhC----CCCChHHc------cEEEeeccccCCCCc--eEEEEECHHHHhhcc
Confidence 6 222346 88999998776422 12222222 367777889999666 688888888776543
Q ss_pred HH-----------hhhcc-CCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCCeec----CCC
Q 012124 325 KI-----------QSQFT-SGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMS----EPQ 386 (470)
Q Consensus 325 ~~-----------~~~~~-~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~----~~~ 386 (470)
.. ..... ..++.+..+++...|+.- .++ .++.+.++.+++.+.+++.+.+.+|+... ...
T Consensus 220 ~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i--~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~R 297 (364)
T PRK12462 220 DTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWI--RDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAAR 297 (364)
T ss_pred ccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhc
Confidence 21 11112 245666777777776642 133 67888899999999999999988654321 224
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+-+.+.+++++.. ...+|.+.+. +.|+.-.-|. ..-|.+|.|+-. +.+.++.+++-++++-+
T Consensus 298 S~mnv~f~~~~~~-----------l~~~f~~~a~-~~gl~~lkGh--r~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 298 STMNVAFRFRQPR-----------LDTLFKEQST-EAGFCGLSGH--RSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred CcceEEEEcCCHH-----------HHHHHHHHHH-HCCCccccCC--cccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 4577777776541 4566776654 5588776664 345789999876 87887777777766654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-10 Score=119.28 Aligned_cols=153 Identities=13% Similarity=0.165 Sum_probs=107.9
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCc----cCH-----HhHhhh
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL----LDP-----KVLESK 223 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~----~d~-----~~l~~~ 223 (470)
.....++++|++.++..++.+++.+||.|+++.-||-+..+.+...|+.+++++... +.++ ++. +.++++
T Consensus 210 Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~ 288 (713)
T PRK15399 210 AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-NALGILGGIPRREFTRDSIEEK 288 (713)
T ss_pred CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccc-cccCCcCCCChhhccHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999997553 2232 445 888888
Q ss_pred ccC-----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCC--cccccccCCCCCceEE
Q 012124 224 LTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPAT--HTSFASLPGMWERTLT 295 (470)
Q Consensus 224 l~~-----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~--~~~~~~~~~~~~~~i~ 295 (470)
+.+ +++++++++|++ -|.+++ +++|++.| . --+|++||+|+. +.|.... ..++....+....++.
T Consensus 289 i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~--g-~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~ 361 (713)
T PRK15399 289 VAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTL--D-VPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFE 361 (713)
T ss_pred HHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHh--C-CCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeee
Confidence 853 336788888865 799999 66667766 2 225569999985 2333211 1122211122234567
Q ss_pred EeccCcccccccceee-EEEc
Q 012124 296 VNGFSKAFAMTGWRLG-YIAG 315 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G-~~~~ 315 (470)
+.|.+|.+ +++.-+ ++..
T Consensus 362 tQStHKtL--~alTQaS~iHv 380 (713)
T PRK15399 362 TQSTHKML--AAFSQASLIHI 380 (713)
T ss_pred eeehhccc--cccchheeeee
Confidence 89999998 455544 4444
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-13 Score=112.51 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=69.6
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcC--CCCCCCcEEEecChHHHHHHHHHHhcCCCCeE
Q 012124 104 PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181 (470)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~it~g~~~al~~~~~~l~~~gd~V 181 (470)
|++.+|+.+++++.+. ..|++..|.++||+++++|+.+.+| +.+++++|++|+|++++++.++.++++|||.|
T Consensus 70 ~d~~~~~~i~~~~~~~-----a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~V 144 (153)
T PLN02994 70 ADICTAEGTIDSFKDI-----ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAF 144 (153)
T ss_pred cccCCcHHHHHHHHHH-----hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEE
Confidence 3444555555555542 3488999999999999999999988 67889999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 012124 182 IIPAPFWVS 190 (470)
Q Consensus 182 lv~~p~y~~ 190 (470)
++++|+|++
T Consensus 145 lVp~P~Y~~ 153 (153)
T PLN02994 145 LVPTPYYAA 153 (153)
T ss_pred EEeCCCCCC
Confidence 999999974
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-10 Score=114.78 Aligned_cols=223 Identities=19% Similarity=0.173 Sum_probs=144.3
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCC----CccCHHhHhhhccC--
Q 012124 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN----FLLDPKVLESKLTE-- 226 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~----~~~d~~~l~~~l~~-- 226 (470)
.....++++|++.++..+..+++.+||.|+++..++-+..+.+-..|+.++++....+.. .+++.+.+++++.+
T Consensus 85 Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~ 164 (557)
T COG1982 85 ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHP 164 (557)
T ss_pred CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhCh
Confidence 335788999999999999999999999999999999999999999999999887654431 34789999887733
Q ss_pred Cc-eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 227 KS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~-~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
.. |++++++|.+ -|++++ .++|.+++..+ ++|+.+|+++.... +-.+..+ ......+.+++..|.+|.++
T Consensus 165 ~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~-~a~v~~deah~~~~-~~~~~l~--~~~~~~~~~~~tqS~HK~l~- 235 (557)
T COG1982 165 DAEKLAVITNPTY-DGVCYN---LRKIVELLHHY-GAWVLYDEAHPAHF-DFSPMLP--ESALNGGADFVTQSTHKLLA- 235 (557)
T ss_pred hhheeEEEecCcc-ceEeec---HHHHHHHHhhc-CceEEhhhcCcccc-cccccCc--chhhhcCceEEEechhhhhh-
Confidence 44 7778888876 699999 88889999999 99999999987532 1111111 12222578899999999984
Q ss_pred cccee-eEEEcCH--H-HHHHHHHHhhhccCCCChHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 306 TGWRL-GYIAGPK--H-FVAACNKIQSQFTSGASSISQKAGVAALG--LGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 306 ~G~r~-G~~~~~~--~-~~~~l~~~~~~~~~~~~~~~q~a~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
++.- .++.... . -.+++.........+.|.....|....-+ .+..+....++..+..-+.|+.+.+..+++++
T Consensus 236 -alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~ 314 (557)
T COG1982 236 -ALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGF 314 (557)
T ss_pred -hhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444 3444442 1 12344433333333333333333332211 11111222233344445556666666666655
Q ss_pred CeecCC
Q 012124 380 VKMSEP 385 (470)
Q Consensus 380 ~~~~~~ 385 (470)
+.+..+
T Consensus 315 ~~~~~~ 320 (557)
T COG1982 315 FPVLQP 320 (557)
T ss_pred eeeccc
Confidence 554433
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-10 Score=105.93 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCCeEEE-cCCCCCChHHHH----------HHcCCE
Q 012124 136 LRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVII-PAPFWVSYPEMA----------RIADAT 201 (470)
Q Consensus 136 lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd~Vlv-~~p~y~~~~~~~----------~~~g~~ 201 (470)
=|+.+-+-+.+-+|. |.-++ .-++++||.+++..+++|||+.+. ...-|.....++ +.+|.+
T Consensus 55 GRd~le~iyA~vfga----E~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~ 130 (403)
T PF06838_consen 55 GRDKLERIYADVFGA----EDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIK 130 (403)
T ss_dssp HHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-E
T ss_pred cHHHHHHHHHHHhCc----hhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCce
Confidence 366666666665653 33333 247899999999999999999985 444566665554 668899
Q ss_pred EEEecCcCCCCCccCHHhHhhhccCCceEEEE-cCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEEeccccccccCCCC
Q 012124 202 PVILPTRISENFLLDPKVLESKLTEKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPAT 279 (470)
Q Consensus 202 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~~~~ 279 (470)
...+++.+++. +|+|.+++++++++|++++ =+..+-+=-.++.++++++++++++ +|++++++|++|++|.-. .
T Consensus 131 Y~~v~L~~dg~--~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~--~ 206 (403)
T PF06838_consen 131 YREVPLTEDGT--IDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET--Q 206 (403)
T ss_dssp EEE--B-TTSS--B-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS--S
T ss_pred eEEEeecCCCC--cCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc--c
Confidence 99999986554 9999999999999999998 4446666678899999999999977 358999999999997532 2
Q ss_pred cccccccCCCCCceEEEeccCcccccccce--eeEEEcCHHHHHHHHHH
Q 012124 280 HTSFASLPGMWERTLTVNGFSKAFAMTGWR--LGYIAGPKHFVAACNKI 326 (470)
Q Consensus 280 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r--~G~~~~~~~~~~~l~~~ 326 (470)
.|.- -+-.+..||+-|..| .|+- -||+++.+++++.....
T Consensus 207 EP~~------vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~R 248 (403)
T PF06838_consen 207 EPTE------VGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYR 248 (403)
T ss_dssp -GGG------GT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHH
T ss_pred Cccc------cchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhh
Confidence 2221 244589999999986 5543 48999999999987654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-09 Score=112.75 Aligned_cols=328 Identities=11% Similarity=0.139 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHhcCCCe-EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----cCcHHHHHHHHHHHHHHcCCCC
Q 012124 79 TVAITDQATALAQAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
-.++.+....+.+.++.+ ..++.|.-+.-.|+.+.+.+.+.-. ..+.|+|. +|..+..=.++..+.+..|.
T Consensus 48 E~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~-~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm-- 124 (939)
T TIGR00461 48 EYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPG-WYTAYTPYQPEISQGRLEALLNFQTVVSDLTGL-- 124 (939)
T ss_pred HHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCch-hhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCC--
Confidence 345555566666666542 2334555444457777655544211 13556553 57666666666777776775
Q ss_pred CCCcEEEecChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 153 TPDQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
+..|.-+..+++.+.+.++.+.. +++++|+|++-.||.+..+++ ..|.+++.++ ++.|++.+
T Consensus 125 ~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~- 193 (939)
T TIGR00461 125 PVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV- 193 (939)
T ss_pred ChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC-
Confidence 44577788888888887776642 234899999999999886665 6888887764 34465555
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA- 304 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~- 304 (470)
++.++++.+|+. +|.+.+ +++|+++++++ |.+++++---..+. +..-+++.+-.|++++ +|.||
T Consensus 194 -~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~-gal~~~~ad~~al~--------ll~~Pge~GaDi~vg~-~q~fg~ 258 (939)
T TIGR00461 194 -DVFGCLLQYPAT-DGSILD---YKQLIDALHSH-KSLVSVAADLMALT--------LLTPPGHYGADIVLGS-SQRFGV 258 (939)
T ss_pred -CEEEEEEECCCC-CeEEec---HHHHHHHHHHc-CCEEEEEechHHhC--------CcCCHHHcCCcEEeeC-CCccCC
Confidence 466667777765 788765 88999999999 88888743221111 1111122344455553 23333
Q ss_pred ---cccceeeEEEcCHHHHHHH----------------------------HHHhhhccCCCChHHHHHHHH--HHhcCCC
Q 012124 305 ---MTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAGVA--ALGLGYA 351 (470)
Q Consensus 305 ---~~G~r~G~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q~a~~~--~l~~~~~ 351 (470)
..|--.|++.+.+++.+.+ ++.+...++|++.......+. +.-.
T Consensus 259 p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~--- 335 (939)
T TIGR00461 259 PMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH--- 335 (939)
T ss_pred CCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH---
Confidence 2355577777777665543 223333444554443332222 2223
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE--EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
+.+.++++.++...+..++.+.|.+. |+++..+ .|| +.++++.. +..++.++|+++ ||.+..
T Consensus 336 G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~fF~~~~v~~~~~------------~~~~i~~~~~~~-gi~l~~ 399 (939)
T TIGR00461 336 GPKGLKNIARRIHSLTSILANGLEND-PHELINK--TWFDTLTVKVGNG------------ISSELLKAAEEF-NINLRA 399 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CccceEEEEeCCC------------CHHHHHHHHHHC-CCeeee
Confidence 36778899898888999999999885 8877644 333 23344321 578888888766 888765
Q ss_pred CCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 430 GDAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 430 g~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
. .++.+++|+.- +.++|+..++.+.
T Consensus 400 ~----~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 400 V----DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred c----CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 2 24689999986 8899999998884
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-10 Score=109.00 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-----CCcEEEecChHHHHHHHHHHhcC--------C
Q 012124 111 LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS--------P 177 (470)
Q Consensus 111 ~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-----~~~i~it~g~~~al~~~~~~l~~--------~ 177 (470)
.+-+.+...+......|...+...++.+.+.+++.+.+|.+.+ ...=++|+|+++++..++.+..+ .
T Consensus 55 i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~ 134 (373)
T PF00282_consen 55 ILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAK 134 (373)
T ss_dssp HHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhc
Confidence 3445566666656666766677889999999999999998621 23567899999998877655321 1
Q ss_pred C-----C-eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---C--ce-EEEEcCCCCCcccCCC
Q 012124 178 G-----D-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---K--SR-LLILCSPSNPTGSVYP 245 (470)
Q Consensus 178 g-----d-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~--~~-~i~l~~p~nPtG~~~s 245 (470)
| + .|++.+-+|.+....+..+|+.++.||+++ ++.+|++.|++++.+ + +- +|+.+..+..||.+=+
T Consensus 135 ~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~ 212 (373)
T PF00282_consen 135 GVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP 212 (373)
T ss_dssp TTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S
T ss_pred ccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC
Confidence 2 2 566777789999999999999999999985 456999999998843 2 22 3444666778998866
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccC-CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-HHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAAC 323 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~~l 323 (470)
+++|.++|+++ ++|+.+|.+|+...+- ......+..+. .-.=+.-+++|.++ ....+|+++...+ .+...
T Consensus 213 ---l~~i~~i~~~~-~~wlHVDaA~gg~~~~~~~~~~~~~gi~---~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~~ 284 (373)
T PF00282_consen 213 ---LEEIADICEKY-NIWLHVDAAYGGSALLSPEYRHLLFGIE---RADSITIDPHKWLG-VPYGCGVLLVRDKSDLRDA 284 (373)
T ss_dssp ---HHHHHHHHHHC-T-EEEEEETTGGGGGGHCTTGGGGTTGG---GESEEEEETTTTTS--SSS-EEEEESSGGGHHGG
T ss_pred ---HHHHhhhcccc-ceeeeecccccccccccccccccccccc---cccccccchhhhhc-CCccceeEEeecccchHHH
Confidence 88999999999 9999999999983321 11111111121 11223456899997 5678999887653 33221
Q ss_pred H----H-Hh------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-
Q 012124 324 N----K-IQ------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP- 385 (470)
Q Consensus 324 ~----~-~~------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~- 385 (470)
. . +. ...+...+. ...++...+..-.++.+.+++..+...+..+++.+.|++.+++++..+
T Consensus 285 ~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~ 363 (373)
T PF00282_consen 285 FSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEP 363 (373)
T ss_dssp GEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTT
T ss_pred hccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1 0 00 001223333 223332222211113566777888888899999999999888887654
Q ss_pred CceEEEeee
Q 012124 386 QGAFYLFID 394 (470)
Q Consensus 386 ~~g~~~~~~ 394 (470)
.-+. +.++
T Consensus 364 ~~~~-vcFr 371 (373)
T PF00282_consen 364 DLNI-VCFR 371 (373)
T ss_dssp SSSE-EEEE
T ss_pred CceE-EEEE
Confidence 4444 4444
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-13 Score=98.82 Aligned_cols=53 Identities=6% Similarity=-0.101 Sum_probs=46.5
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
..+.|.+|.++||++|||.++||+.|+|||+| ||++|+++|+|+.+++ +|+||
T Consensus 9 l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~-~G~~V 64 (64)
T PF00392_consen 9 LRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPG-RGTFV 64 (64)
T ss_dssp HHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECC-ceEEC
Confidence 34679999999999999999999999999999 9999999999999999 99997
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=97.48 Aligned_cols=357 Identities=16% Similarity=0.195 Sum_probs=218.4
Q ss_pred HHHHHhcCCCeEEccCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEe
Q 012124 86 ATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS 160 (470)
Q Consensus 86 ~~~~~~~~~~~i~l~~g~~~~~~-----~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it 160 (470)
...+...|.+..-|.+.+....+ .-.+.+....++-.+.-.|..+.++..|.+++.+.+ |. +.++.|
T Consensus 29 E~al~~ag~N~F~l~Sedv~IDLLTDSGTgams~~qwaamm~GDEAYagsrs~~~L~~avkdif----Gf----q~~iPt 100 (471)
T COG3033 29 EEALKKAGYNPFLLDSEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGSRSYYALADAVKDIF----GF----QYTIPT 100 (471)
T ss_pred HHHHHHcCCCeeeccccceEEEeeccCCcccccHHHHHHHhccchhhcccccHHHHHHHHHHhc----Cc----eeeeec
Confidence 34455667666666666532111 122333333444456778988999999999999885 43 578888
Q ss_pred cChHHHHHHHHHHhcCCCC-----eEEEcCCCCC-ChHHHHHHcCCEEEEecCcCCCC--------CccCHHhHhhhccC
Q 012124 161 NGAKQSILQAVLAVCSPGD-----EVIIPAPFWV-SYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTE 226 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd-----~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~--------~~~d~~~l~~~l~~ 226 (470)
.-+..|-+.++..++++|+ +.++++-.|. ......+..|+.++.++++...+ ..+|++.|++.|++
T Consensus 101 hQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lide 180 (471)
T COG3033 101 HQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDE 180 (471)
T ss_pred cCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHH
Confidence 8888887777777776554 3344444444 45556788999888888764221 23799999999964
Q ss_pred ----CceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc-ccccccC------CCCcccccccCCCC--Cc
Q 012124 227 ----KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIYA------PATHTSFASLPGMW--ER 292 (470)
Q Consensus 227 ----~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~-~~~~~~~------~~~~~~~~~~~~~~--~~ 292 (470)
++-.|+++-. |.-.|+..|.+.++++.++|++| ++.++.|.+ |.+-.|- +....++..+..+. =-
T Consensus 181 vG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky-~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYa 259 (471)
T COG3033 181 VGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY-DIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYA 259 (471)
T ss_pred hCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc-CCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhh
Confidence 5666665444 55789999999999999999999 999999976 3332221 11223333321100 00
Q ss_pred eEEEeccCcccccccceeeEEEcCHH----HHHHHHHHhhhc-----cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKH----FVAACNKIQSQF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~----~~~~l~~~~~~~-----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
.-..-|.-|- |+.-+ -|++...++ +...++...-.. ..+.+.=...+++.-|.++.. .+|++...++
T Consensus 260 D~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv~Q- 335 (471)
T COG3033 260 DGCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRVAQ- 335 (471)
T ss_pred hhheeecccc-ceecc-ccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcC-cHHHHHHHHH-
Confidence 0122333333 33322 167776654 555554332111 112233334445555555443 5666665544
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--C----
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--D---- 436 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~---- 436 (470)
.++|.+.|.+. |+.+..|.||.-++++..+.... +.+.+ ....|+-.|..+.||-..--..|.. +
T Consensus 336 ---v~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eqF----paqala~ely~e~GiRavElG~~~~~rd~ktg 407 (471)
T COG3033 336 ---VQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQF----PAQALACELYKEAGIRAVELGSFSLGRDPKTG 407 (471)
T ss_pred ---HHHHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCChhhC----cHHHHHHHHHHHhCeeeeeeeceecccCCCcc
Confidence 45677777777 99898999998888875332111 11112 5677888888888997765444421 0
Q ss_pred -------CcEEEEeec---CHHHHHHHHHHHHHHHHh
Q 012124 437 -------TCIRISYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 437 -------~~iRls~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
.-+|+++.. +.+-++-.++.++++.+.
T Consensus 408 ~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 408 KQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred ccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 369999875 778888888888877664
|
|
| >COG2186 FadR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-12 Score=118.37 Aligned_cols=56 Identities=7% Similarity=-0.017 Sum_probs=53.0
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...+|.+|.++||++|||.|+||++|||||+| |+..|+.+|+|++++| +||||...
T Consensus 19 i~~~I~~g~~~~G~~LP~EreLae~fgVSR~~vREAl~~L~a~Glve~r~G-~Gt~V~~~ 77 (241)
T COG2186 19 IGALIVSGELPPGDRLPSERELAERFGVSRTVVREALKRLEAKGLVEIRQG-SGTFVRPR 77 (241)
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHCCCcHHHHHHHHHHHHCCCeeecCC-CceEecCC
Confidence 45689999999999999999999999999999 9999999999999999 99999763
|
|
| >COG2188 PhnF Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-12 Score=118.90 Aligned_cols=55 Identities=9% Similarity=-0.056 Sum_probs=52.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|+++||++|||.|+||+++||||.| |+++|+++|+|+.+.| +||||...
T Consensus 17 ~~~I~~G~~~~G~~LPsE~eLa~~f~VSR~TvRkAL~~L~~eGli~r~~G-~GtfV~~~ 74 (236)
T COG2188 17 RQRIESGELPPGDKLPSERELAEQFGVSRMTVRKALDELVEEGLIVRRQG-KGTFVASP 74 (236)
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHCCcHHHHHHHHHHHHHCCcEEEEec-CeeEEcCc
Confidence 3579999999999999999999999999999 9999999999999999 99999764
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-08 Score=96.26 Aligned_cols=221 Identities=19% Similarity=0.147 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHH-HHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEE----
Q 012124 109 PVLIAEAGINAIREG-FTRYTPNAGTLELRSA-ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI---- 182 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~-ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vl---- 182 (470)
.++..+++....... ...|.-..|...-|.. +++.+ .+. ...+.++++++.+.++.+++.++.+++..|+
T Consensus 40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~---~~~-~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~ 115 (395)
T COG1921 40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELL---CGL-TGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGE 115 (395)
T ss_pred CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHH---hcc-cchhheeeECCcHHHHHHHHhhhccCCeEEEEccc
Confidence 677788888777653 1244344443333332 33333 343 3467899999999999999999876544443
Q ss_pred -EcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 183 -IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 183 -v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
|+ ++.++..++++..|++++.+-... .-...+++.+|++++++++- .+.|.+.-..++ .++++++|+++
T Consensus 116 lV~-gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~- 186 (395)
T COG1921 116 LVE-GGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNYGFTGMLS---EEELVEIAHEK- 186 (395)
T ss_pred ccc-CCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeecccccccccc---HHHHHHHHHHc-
Confidence 34 688889999999999999987532 25788999999999998875 444544434556 77789999999
Q ss_pred CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHH
Q 012124 261 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQK 340 (470)
Q Consensus 261 ~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~ 340 (470)
++++|+|++-+...-. .+.+..+.. .+-.+++.|-.|.+ .|.+.|.+++.+++++.+++..-....-.......
T Consensus 187 ~lpvivD~aSg~~v~~---e~~l~~~la-~GaDLV~~SgdKll--gGPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla 260 (395)
T COG1921 187 GLPVIVDLASGALVDK---EPDLREALA-LGADLVSFSGDKLL--GGPQAGIIVGKKELIEKLQSHPLKRALRVDKETLA 260 (395)
T ss_pred CCCEEEecCCcccccc---ccchhHHHh-cCCCEEEEecchhc--CCCccceEechHHHHHHHHhhhhhhhhhcCcHhHH
Confidence 9999999988764321 223333222 35558889999998 47789999999999999987655555556777777
Q ss_pred HHHHHHhc
Q 012124 341 AGVAALGL 348 (470)
Q Consensus 341 a~~~~l~~ 348 (470)
++.++|+.
T Consensus 261 ~l~~aLe~ 268 (395)
T COG1921 261 ALEAALEL 268 (395)
T ss_pred HHHHHHHH
Confidence 77777764
|
|
| >TIGR02404 trehalos_R_Bsub trehalose operon repressor, B | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-12 Score=118.56 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||+||||.++||+++||||.| |+++|++||+|+.++| +||||..
T Consensus 10 ~~~I~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G-~GTfV~~ 66 (233)
T TIGR02404 10 EQKITHGQYKEGDYLPSEHELMDQYGASRETVRKALNLLTEAGYIQKIQG-KGSIVLN 66 (233)
T ss_pred HHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-ceEEEec
Confidence 3568999999999999999999999999999 9999999999999999 9999964
|
subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. |
| >TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-12 Score=118.40 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=51.0
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+|.++||+||||.|+||+++||||.| |+++|+.||+|++++| +||||..
T Consensus 19 ~~I~~g~~~~G~~LPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G-~GtfV~~ 74 (238)
T TIGR02325 19 QEIAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQG-RGTFVAA 74 (238)
T ss_pred HHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CEEEECC
Confidence 568999999999999999999999999999 9999999999999999 9999964
|
All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. |
| >PRK14999 histidine utilization repressor; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-12 Score=118.25 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||+||||.|+||+++||||+| |+++|+.||+|+.++| +||||..
T Consensus 22 ~~~I~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGli~r~~G-kGTfV~~ 78 (241)
T PRK14999 22 CKKIAGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWLVRLQG-VGTFVAE 78 (241)
T ss_pred HHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-cEEEECC
Confidence 3568999999999999999999999999999 9999999999999999 9999965
|
|
| >PRK11402 DNA-binding transcriptional regulator FrlR; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-12 Score=117.59 Aligned_cols=55 Identities=15% Similarity=-0.013 Sum_probs=51.7
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||+||||.++||++|||||.| |.++|++||+|+.+.| +||||...
T Consensus 19 ~~~I~~G~~~~g~kLPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G-~GTfV~~~ 76 (241)
T PRK11402 19 LDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQG-KGTFVQSQ 76 (241)
T ss_pred HHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-ceeEECCC
Confidence 3568999999999999999999999999999 9999999999999999 99999654
|
|
| >TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-12 Score=116.48 Aligned_cols=54 Identities=11% Similarity=-0.056 Sum_probs=51.5
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
.+.|.+|.++||+||||.|+||+++||||.| |++.|++||+|+.++| +||||..
T Consensus 11 ~~~I~~g~~~~g~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G-~GtfV~~ 67 (230)
T TIGR02018 11 LERIRSGEWPPGHRIPSEHELVAQYGCSRMTVNRALRELTDAGLLERRQG-VGTFVAE 67 (230)
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CEEEEcc
Confidence 4579999999999999999999999999999 9999999999999999 9999965
|
This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-08 Score=95.96 Aligned_cols=329 Identities=18% Similarity=0.251 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhcCCC-eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CcCcHHHHHHHHHHHHHHcCCCCCC
Q 012124 81 AITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTP 154 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~-~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~-----~~g~~~lr~~ia~~l~~~~g~~~~~ 154 (470)
++.+....+.+++.. .-.++.|.-+.-.|+.+.+.+.+.- +..+.|+| ++|..+..-..+..+.+..|.++
T Consensus 51 e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~-ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdv-- 127 (429)
T PF02347_consen 51 ELLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRP-EFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDV-- 127 (429)
T ss_dssp HHHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCH-HCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSE--
T ss_pred HHHHHHHHHHhcCCCCCccccccccCceeChhhcCccccCh-hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCc--
Confidence 445555555555442 1123344444334555544222211 12456665 57877777778888888788653
Q ss_pred CcEEEecChHHHHHHHHHHh---cCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 155 DQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
-|.-+-.|++.+-+.++.+. -+.+++|+++.-.+|.+..+++. .|.+++.++.+.++. .| +++
T Consensus 128 aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~--~d--------~~~ 197 (429)
T PF02347_consen 128 ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGT--TD--------DDD 197 (429)
T ss_dssp E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCS--B---------STT
T ss_pred cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCC--cc--------ccC
Confidence 24456667777766665553 23346999999999999886554 899999999875432 33 568
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc---
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA--- 304 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~--- 304 (470)
+.+|++.+|+. .|..-+ +++|.++++++ |.++|. .+.- +.... ..-+++.+-.|++++ +|.||
T Consensus 198 ~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~-gal~~~-~ad~-~aL~~------l~~Pge~GADI~vg~-~Q~fg~p~ 263 (429)
T PF02347_consen 198 TAAVMVQNPNT-FGVFED---IKEIADIAHAA-GALVIV-GADP-NALGG------LKSPGEYGADIVVGE-HQTFGIPM 263 (429)
T ss_dssp EEEEEEESS-T-TSB--T---HHHHHHHHHHT-T-EEEE-CGGC-CGCCT------C--GGGGT-SEEEEC-CTTTT---
T ss_pred eEEEEeecCCC-CceEee---HHHHHHHHHHc-CCEEEE-ecCH-HHHhC------cCChhhcCccEEeeC-CCCCcccC
Confidence 89999999986 677766 89999999999 888875 2221 11111 111222344577776 66664
Q ss_pred -cccceeeEEEcCHHHHHHH----------------------------HHHhhhccCCCChHHHH--HHHHHHhcCCCCh
Q 012124 305 -MTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQK--AGVAALGLGYAGG 353 (470)
Q Consensus 305 -~~G~r~G~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q~--a~~~~l~~~~~~~ 353 (470)
..|--+|++.+.+++++.+ ++-+...++|++..... ++..+... +.
T Consensus 264 ~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~---G~ 340 (429)
T PF02347_consen 264 GFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL---GP 340 (429)
T ss_dssp CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH---HH
T ss_pred CCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh---CH
Confidence 3455678888887766543 33344556666655433 22333333 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeee-ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 354 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID-FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
+.++++.+....+..++.+.|+++.+..+.. .-||=++. .++.. ...++.++... .|+.. .
T Consensus 341 ~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~--~~f~e~v~~~~~~~-----------~~~~l~~~~~~-~gl~~----~ 402 (429)
T PF02347_consen 341 EGLREIAERIHLNAHYLAERLKKIYGLPFDN--PFFFEFVVVFSKDK-----------EVEELLKRGIE-GGLNL----R 402 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTBECSSS--SSBSSEEEEESS-H-----------HHHHHHHTT-----EEE----G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCC--CCceeeeeecCCcH-----------HHHHHHHHHHh-cCCCc----c
Confidence 8899999999999999999999863444432 22321222 11100 22233333322 24322 1
Q ss_pred CCCCCcEEEEeec--CHHHHHHHHHHH
Q 012124 433 FGDDTCIRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 433 f~~~~~iRls~~~--~~~~i~~~l~~l 457 (470)
+...+++-++++- +.++|+..++.|
T Consensus 403 ~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 403 YPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 2234578888875 788998887754
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK09764 DNA-binding transcriptional repressor MngR; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-12 Score=116.03 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=51.5
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
.+.|.+|.++||+||||.++||+++||||.| |.++|+.||+|+.++| +||||..
T Consensus 15 ~~~I~~g~~~~G~~LPsE~eL~~~~~VSR~TvR~Al~~L~~eGli~r~~G-~GtfV~~ 71 (240)
T PRK09764 15 REQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQG-SGTYVKE 71 (240)
T ss_pred HHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-ceeEEcc
Confidence 3579999999999999999999999999999 9999999999999999 9999965
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-07 Score=87.90 Aligned_cols=337 Identities=15% Similarity=0.174 Sum_probs=207.1
Q ss_pred HHHHHHHHHHhcCCCeE-EccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----cCcHHHHHHHHHHHHHHcCCCCCC
Q 012124 81 AITDQATALAQAGVSVI-RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 154 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~i-~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----~g~~~lr~~ia~~l~~~~g~~~~~ 154 (470)
+.....+.+..+++.+. .++.|.-+.-.|+.+.+.+.+.- ...+.|+|. +|..+..=..+..+....|.++.
T Consensus 61 e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~p-ewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VA- 138 (450)
T COG0403 61 EALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENP-EWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVA- 138 (450)
T ss_pred HHHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCc-cccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcc-
Confidence 33444455555555322 34566666666777775544421 124567664 55555444445555555676554
Q ss_pred CcEEEecChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 155 DQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
|--+-.+++.+-+.++.+.. ++.++|+|+.-+||.+..+++. .|.+++.++.+ |++.|++.....
T Consensus 139 -NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~~~~~ 210 (450)
T COG0403 139 -NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESADDGD 210 (450)
T ss_pred -cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhccccC
Confidence 55556677777776666542 3358999999999999988764 56777777653 778888873347
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEE-eccccccccCCCCcccccccCCCCCceEEEeccC---ccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS-DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS---KAF 303 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~-Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s---K~~ 303 (470)
+-++++..|+. .| ...+++++|.+.++++ +.++++ =|.-+ ..+..-++..+-.|++|+.. =.+
T Consensus 211 ~~gv~vQyP~~-~G--~~~~d~~~l~~~~h~~-~al~~v~aDpla---------L~LL~pPGe~GADIvvG~~QrfGvPm 277 (450)
T COG0403 211 VFGVLVQYPNT-FG--IVEEDLRALIEAAHSA-GALVIVAADPLA---------LGLLKPPGEFGADIVVGSAQRFGVPM 277 (450)
T ss_pred eEEEEEecCCC-CC--ccchhHHHHHHHHhhc-CCEEEEEechhH---------hhccCCccccCCceEEecCcccCCCc
Confidence 78888877764 45 2334599999999999 776663 12111 12223344456678888754 445
Q ss_pred ccccceeeEEEcCHHHHHH----------------------------HHHHhhhccCCCChHHHHHHHHHHhcCCCChHH
Q 012124 304 AMTGWRLGYIAGPKHFVAA----------------------------CNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 355 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~----------------------------l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~ 355 (470)
|+.|-.+||+.+.+++.+. +++-+...++|++......++.....- .+...
T Consensus 278 gfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~-hGp~G 356 (450)
T COG0403 278 GFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVY-HGPQG 356 (450)
T ss_pred CCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH-hChHH
Confidence 6667778999888876544 345556667777665443333222111 14788
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC-CCeecCCCceEE--EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELE-GVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
++++..+..+...++.+.|++.. |+++... .|| +.++++.. ....+.++.. ..|+-+..-.
T Consensus 357 Lk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~------------~~~~l~~~~~-~~G~~L~~~~- 420 (450)
T COG0403 357 LKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPEE------------VAEALLAAAI-AGGINLRRVD- 420 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecchh------------HHHHHHHHHH-hcCCceeeec-
Confidence 99999999999999999999752 5666533 444 23444421 3444444433 3466554321
Q ss_pred CCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 433 FGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 433 f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
.+++-+++.- ++++++..++.+...
T Consensus 421 ---~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 421 ---ADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ---CCceEEEeecccCHHHHHHHHHHHhhh
Confidence 2366677765 678898888877654
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-07 Score=96.19 Aligned_cols=280 Identities=13% Similarity=0.096 Sum_probs=169.0
Q ss_pred ChHHHHH-HHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC----C-----
Q 012124 108 TPVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----P----- 177 (470)
Q Consensus 108 ~~~~~~~-a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~----~----- 177 (470)
+++.+.. .+...+......|...++...+.+.+.+++.+.+|.+- ..=.+|+|++++....+....+ |
T Consensus 95 ~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~ 172 (608)
T TIGR03811 95 LMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFAMKE 172 (608)
T ss_pred CHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccchhhh
Confidence 3455544 44444444556666677889999999999999999752 3344788888877655443211 0
Q ss_pred -------------------------------------------CC------eEEEcCCCCCChHHHHHHcCC---EEEEe
Q 012124 178 -------------------------------------------GD------EVIIPAPFWVSYPEMARIADA---TPVIL 205 (470)
Q Consensus 178 -------------------------------------------gd------~Vlv~~p~y~~~~~~~~~~g~---~~~~v 205 (470)
|. +|+++.-.|.++...+..+|+ +++.|
T Consensus 173 ~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~V 252 (608)
T TIGR03811 173 VKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPV 252 (608)
T ss_pred ccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEe
Confidence 00 577888889999999999999 58999
Q ss_pred cCcCCCCCccCHHhHhhhccC----C--ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE--EEEEeccccccc---
Q 012124 206 PTRISENFLLDPKVLESKLTE----K--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL--LVLSDEIYEHII--- 274 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~----~--~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~--~iI~Dd~~~~~~--- 274 (470)
|++ +++.+|++.|++.+++ + +-+|+-+..+..+|.+=+.+++.+|++.++++ |+ |+.+|.+|+.+.
T Consensus 253 pvD--~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~-gl~~~lHVDAAyGG~~~~l 329 (608)
T TIGR03811 253 PVD--SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKE-GIYFYLHVDAAYGGYGRAI 329 (608)
T ss_pred ecC--CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHc-CCceeEeeeccccchhhhh
Confidence 996 4456999999998853 2 22344466678899999955555555555888 86 799999999742
Q ss_pred cCCCC--cccc------------------------c-ccCCCCCceEEEeccCcccccccceeeEEEcCHH-HHHHHHHH
Q 012124 275 YAPAT--HTSF------------------------A-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKI 326 (470)
Q Consensus 275 ~~~~~--~~~~------------------------~-~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~~l~~~ 326 (470)
+-... ..++ . .+.+...-.=+.-.++|.+. ....+|.++.+.. +.+.+...
T Consensus 330 ~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~~~~ 408 (608)
T TIGR03811 330 FLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVISYF 408 (608)
T ss_pred hccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHHhcC
Confidence 11100 0000 0 01111111223446899985 5678898776543 33333211
Q ss_pred hhh--------------ccCCCChHHHHHHH--HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCee--
Q 012124 327 QSQ--------------FTSGASSISQKAGV--AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL------EGVKM-- 382 (470)
Q Consensus 327 ~~~--------------~~~~~~~~~q~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~-- 382 (470)
..+ .....+.+...++. ..++.-.++.+.+.++.+...+.++++.+.|++. +.+++
T Consensus 409 a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~ 488 (608)
T TIGR03811 409 ATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHP 488 (608)
T ss_pred cchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEe
Confidence 000 01123333322222 2222210135667778888888888888888773 34553
Q ss_pred -cCCCceEEEee
Q 012124 383 -SEPQGAFYLFI 393 (470)
Q Consensus 383 -~~~~~g~~~~~ 393 (470)
.+|+-++..|.
T Consensus 489 ~~~pdlniV~Fr 500 (608)
T TIGR03811 489 LTKPDFNMVDYV 500 (608)
T ss_pred cCCCCcceEEEE
Confidence 45666764443
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-08 Score=93.75 Aligned_cols=308 Identities=16% Similarity=0.157 Sum_probs=192.7
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc----C-CC---CeEEEcCCCCCChHHHHHHcCCE
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----S-PG---DEVIIPAPFWVSYPEMARIADAT 201 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~----~-~g---d~Vlv~~p~y~~~~~~~~~~g~~ 201 (470)
.++..++..++.+++.+.++-+ +...=..|+|+++++.++.+... + .| ..++.+.-.+..+...++.++.+
T Consensus 115 fp~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~ 193 (491)
T KOG1383|consen 115 FPVVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVE 193 (491)
T ss_pred cchhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEE
Confidence 3577888889999998888865 22333578899999665555421 1 22 24555555566667778889999
Q ss_pred EEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEEeccccccccC-CCC
Q 012124 202 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYA-PAT 279 (470)
Q Consensus 202 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~-~~~ 279 (470)
+..||+++ +.+.+|+..+.+.+++++.+++...|+.|+|..=+ .++|.++..+ + ++.|.+|.+-+.|.-. +..
T Consensus 194 l~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~---ve~l~~l~~e~w-~ipiHvDa~~GgFi~p~~~~ 268 (491)
T KOG1383|consen 194 LREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIED---VEKLADLLLEIW-DIPIHVDACLGGFINPAGYL 268 (491)
T ss_pred EEeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccchhh---HHHHHHHHHHHh-CCceeecccCcccccccccc
Confidence 99999986 67899999999999999999999999999998766 8888888888 9 9999999999887652 111
Q ss_pred cccccccCCCCCceEEEec-cCcccccccceeeEEEcCH-HHH-HH-------HHHHhhhccCCCChHH-HHHH--HHHH
Q 012124 280 HTSFASLPGMWERTLTVNG-FSKAFAMTGWRLGYIAGPK-HFV-AA-------CNKIQSQFTSGASSIS-QKAG--VAAL 346 (470)
Q Consensus 280 ~~~~~~~~~~~~~~i~i~S-~sK~~~~~G~r~G~~~~~~-~~~-~~-------l~~~~~~~~~~~~~~~-q~a~--~~~l 346 (470)
...-+++.. ..|-.+.. -+| ||+.--.+||++-.. ++. .+ +-......+.+.|..+ |.++ ++++
T Consensus 269 ~~~~fdFr~--p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~ 345 (491)
T KOG1383|consen 269 NEEEFDFRV--PGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALM 345 (491)
T ss_pred CccccccCC--CCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHH
Confidence 111122211 22222222 223 444333478877432 221 11 1111111222222222 2222 2334
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE
Q 012124 347 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425 (470)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 425 (470)
.. +.+...+..+...+....+.+.+++++++.+... .-.+.+| .-... +.-++...|.+. |-
T Consensus 346 ~l---G~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~-~s~~~------------~i~elsd~l~~~-GW 408 (491)
T KOG1383|consen 346 SL---GEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILF-GSNDV------------NIFELSDLLRKK-GW 408 (491)
T ss_pred Hh---hHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEc-cCCcc------------chhhhhHHHHhc-Cc
Confidence 44 3555666666677888889999999888877643 3344333 22221 566777776655 65
Q ss_pred EEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhCC
Q 012124 426 ALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 426 ~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.+ |... .+..+-+++.. .++--++++..|++++++++.
T Consensus 409 ~l-nalq--~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 409 IL-NALQ--FPAAIHICVTRVHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred Cc-cccC--CCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHh
Confidence 44 3322 24466666654 444467788888888887754
|
|
| >PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-11 Score=114.19 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=48.7
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+ .++||+||||.++||+++||||.| |+++|++||+|++++| +||||..
T Consensus 23 ~~I~~-~~~~G~~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGli~r~~G-~GtfV~~ 77 (241)
T PRK10079 23 QELRQ-HYRCGDYLPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQG-VGVLVLM 77 (241)
T ss_pred HHHhc-ccCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CEEEEec
Confidence 34665 999999999999999999999999 9999999999999999 9999965
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-07 Score=83.90 Aligned_cols=334 Identities=16% Similarity=0.114 Sum_probs=184.0
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcC-------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC--cEEEecChHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQSI 167 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~-------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~--~i~it~g~~~al 167 (470)
|.|-..++. +..++.+++-..+.+. ...|+..+-+.+..-...++-.+.|+.+-... ||-.-+|+ .|.
T Consensus 43 ieLIaSENF--ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGS-PAN 119 (477)
T KOG2467|consen 43 IELIASENF--TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGS-PAN 119 (477)
T ss_pred eeEeecccc--hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCC-chh
Confidence 444433332 4677788888777663 12233222222222222333334456433322 44444555 456
Q ss_pred HHHHHHhcCCCCeEEEcC-CCCCChHHHHHHcCC---------EEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCC
Q 012124 168 LQAVLAVCSPGDEVIIPA-PFWVSYPEMARIADA---------TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSP 236 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~-p~y~~~~~~~~~~g~---------~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p 236 (470)
..+..++++|+|+|+-.+ |.=....+-...-+- +-.++.+++..+ -||.|.||+.... ++|+|+--..
T Consensus 120 favYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG-~IDYD~Le~~A~~frPk~iiaG~S 198 (477)
T KOG2467|consen 120 FAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTG-YIDYDKLEKTATLFRPKLIIAGTS 198 (477)
T ss_pred hHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCC-ceehHHHHHHHHhcCCcEEEeccc
Confidence 668889999999998433 321111111111111 222344554444 5899999987644 7787664222
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
.++ ..++-.++ .++|.+. +.+++.|-++-.........++..... .|+..|..|++ .|-|-|.+...
T Consensus 199 aY~--R~~DYaR~---R~Iad~~-gA~Lm~DMAHISgLVAA~vipsPFey~-----DiVTTTTHKsL--RGPRg~mIFyR 265 (477)
T KOG2467|consen 199 AYS--RLIDYARF---RKIADKV-GAYLMADMAHISGLVAAGVIPSPFEYC-----DIVTTTTHKSL--RGPRGAMIFYR 265 (477)
T ss_pred cch--hhccHHHH---HHHHHhc-CceeehhhhhHHHHHhcccCCCccccc-----ceeeccccccc--cCCcceeEEEe
Confidence 333 34554444 5555577 899999999754222222223332222 38888899987 78888877754
Q ss_pred H---------------HHHHHHHHH-hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 317 K---------------HFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 317 ~---------------~~~~~l~~~-~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
+ ++-+++... ......++......+++.+|..... ...+...++...+.+.|.+.|.+. |+
T Consensus 266 kGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~t--pefk~Yq~qV~~Nakala~~l~~~-Gy 342 (477)
T KOG2467|consen 266 KGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMT--PEFKEYQKQVLKNAKALASALISR-GY 342 (477)
T ss_pred ccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHHHHHHc-Cc
Confidence 3 123333322 2223345555566666667765432 334445555666777888888877 88
Q ss_pred eecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-----CCcEEEEeec------CHH
Q 012124 381 KMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-----DTCIRISYAA------SLT 448 (470)
Q Consensus 381 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-----~~~iRls~~~------~~~ 448 (470)
++... ..+..+.+++... + -+-.-+++.++..+|.+.--..++. ++.+|+.... .++
T Consensus 343 ~lvtgGTDnHlvLvDLr~~-G----------~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~ 411 (477)
T KOG2467|consen 343 KLVTGGTDNHLVLVDLRPK-G----------VDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEE 411 (477)
T ss_pred eEecCCccceEEEEecccc-C----------CchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHH
Confidence 76533 3344456677542 1 2233345566666776655555543 6899997532 567
Q ss_pred HHHHHHHHHHHHH
Q 012124 449 TLQAAVERIKKGL 461 (470)
Q Consensus 449 ~i~~~l~~l~~~l 461 (470)
|+++..+-|.+++
T Consensus 412 df~~v~~fi~~av 424 (477)
T KOG2467|consen 412 DFEKVADFIDRAV 424 (477)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666554
|
|
| >PRK04984 fatty acid metabolism regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-11 Score=113.07 Aligned_cols=54 Identities=15% Similarity=-0.103 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||+||||.|+||++|||||+| |+.+|+.+|+|+.++| +||||+.
T Consensus 17 ~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~~~g-~G~~V~~ 73 (239)
T PRK04984 17 IESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG-KPTKVNN 73 (239)
T ss_pred HHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CeeEeCC
Confidence 3579999999999999999999999999999 9999999999999999 9999965
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-08 Score=87.09 Aligned_cols=329 Identities=13% Similarity=0.079 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHHHcC--CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh---cCCCCeEEE
Q 012124 109 PVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVII 183 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l---~~~gd~Vlv 183 (470)
+|++.++..+++..- ..++-. .+|-+......... ..-+-+++++++++|.+++++.. .+..|.| +
T Consensus 63 hp~VV~A~~kQmat~~tN~RFlh----d~lv~cA~~l~stl----PeLsvc~F~NSGSEANDLALRLAR~ftkhqDvI-t 133 (452)
T KOG1403|consen 63 HPEVVRAGAKQMATISTNNRFLH----DELVQCARTLTSTL----PELSVCFFVNSGSEANDLALRLARNFTKHQDVI-T 133 (452)
T ss_pred CHHHHHHHHHHHhHhcccchhhH----HHHHHHHHHHhhcC----CCceEEEEecCCchhhHHHHHHHHhhcccCceE-E
Confidence 677777777665432 222211 23333322222211 12356788999999999998864 3444554 5
Q ss_pred cCCCCCChHHHH-HH------cCC-----EEEEe-cCcC--CCCCc-----------cCHHhHhhhcc----C--CceEE
Q 012124 184 PAPFWVSYPEMA-RI------ADA-----TPVIL-PTRI--SENFL-----------LDPKVLESKLT----E--KSRLL 231 (470)
Q Consensus 184 ~~p~y~~~~~~~-~~------~g~-----~~~~v-~~~~--~~~~~-----------~d~~~l~~~l~----~--~~~~i 231 (470)
.+..|+++.... +. .|. +.+.| |..+ .+.+. .-.|.+++.++ . ++.+.
T Consensus 134 ldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAf 213 (452)
T KOG1403|consen 134 LDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAF 213 (452)
T ss_pred EechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHH
Confidence 567777765321 11 111 11111 1110 00000 11123333332 1 22233
Q ss_pred EEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee
Q 012124 232 ILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 310 (470)
Q Consensus 232 ~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~ 310 (470)
+-.+-+.-.|+++| ....+++++..+.+ |-+.|.||+.-.|..-+.....+.-. +-+--|-++.|.+| .|.++
T Consensus 214 iAEslQSCGGQiiPPagYFq~Va~~Vr~a-GGv~IaDEVQvGFGRvG~hyWafq~y----~fiPDIVtmgKpmG-NGhPV 287 (452)
T KOG1403|consen 214 IAESLQSCGGQIIPPAGYFQAVADAVRSA-GGVCIADEVQVGFGRVGSHYWAFQTY----NFIPDIVTMGKPMG-NGHPV 287 (452)
T ss_pred HHHHHHhcCCcccCchhHHHHHHHHHhcC-CCeEEeehhhhcccccchhhhhhhhh----ccccchheecccCC-CCCee
Confidence 33555777777655 55789999999999 88888899998865444433333221 11112556889999 99999
Q ss_pred eEEEcCHHHHHHHHH--HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC-CCeecC--C
Q 012124 311 GYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GVKMSE--P 385 (470)
Q Consensus 311 G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~--~ 385 (470)
+.++..+++.+++.. ...+.+++.++++.++..+.++.-+ ++.+.+...+ .-+.|...|+++. ..++++ .
T Consensus 288 a~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e--~E~Lq~ha~~---vG~~L~~lL~~~k~kh~~IGDvR 362 (452)
T KOG1403|consen 288 AAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCE--DENLQEHAQQ---VGEKLEVLLRRLKQKHECIGDVR 362 (452)
T ss_pred eEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHh--hhhHHHHHHH---HHHHHHHHHHHHhhhccceeccc
Confidence 999999999999874 4556678899999888888776311 2223333332 2333333333320 122222 2
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe--ecCHHHHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY--AASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~--~~~~~~i~~~l~~l~~~l~ 462 (470)
.-|+|+-+++-+... .+.-....+..+..+|.+.++|++..-.+ ..+-+.|-. +-++++.++.+..|.+++.
T Consensus 363 GvGLFiGIdLVkD~~---tRtP~tk~A~~~v~rlke~y~VLlsaDGP--h~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 363 GVGLFIGIDLVKDRK---TRTPDTKEAHWVVNRLKELYRVLLSADGP--HRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred cceEEEeeeeecccc---cCCCcHHHHHHHHHHHHHhhhEEEecCCC--CCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 447888787743211 10000012345667788888898875321 123444432 2267777777777777664
|
|
| >TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-11 Score=108.68 Aligned_cols=54 Identities=15% Similarity=-0.100 Sum_probs=51.6
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++|||.|+||++|||||+| |+..|+.+|+|+.++| +||||+.
T Consensus 16 ~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~~~~~-~G~~V~~ 72 (235)
T TIGR02812 16 VESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG-KPTKVNN 72 (235)
T ss_pred HHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-CccEecC
Confidence 4579999999999999999999999999999 9999999999999999 9999976
|
Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function. |
| >PRK10225 DNA-binding transcriptional repressor UxuR; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.3e-11 Score=109.94 Aligned_cols=54 Identities=7% Similarity=-0.071 Sum_probs=51.6
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++|||.|+||++|||||+| |+.+|+.+|+|+.++| +|+||..
T Consensus 19 ~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~~-~G~~V~~ 75 (257)
T PRK10225 19 RDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRG-AGIYVLD 75 (257)
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecC-CEEEEeC
Confidence 4679999999999999999999999999999 9999999999999999 9999965
|
|
| >PRK09990 DNA-binding transcriptional regulator GlcC; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-11 Score=109.54 Aligned_cols=55 Identities=9% Similarity=-0.043 Sum_probs=51.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
-..|.+|.++||++|||.|+||+.|||||+| |...|+.+|+|+.++| +|+||+..
T Consensus 17 ~~~I~~g~l~pG~~LPsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~~~~-~G~~V~~~ 74 (251)
T PRK09990 17 ERLIVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQG-RGSFVARL 74 (251)
T ss_pred HHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CeeEEecC
Confidence 4579999999999999999999999999999 9999999999999999 99999753
|
|
| >PRK11523 DNA-binding transcriptional repressor ExuR; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-11 Score=109.52 Aligned_cols=54 Identities=13% Similarity=-0.082 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||+||||.|+||++|||||+| |+..|+.+|+|+.++| +|+||..
T Consensus 18 ~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~L~~eGlV~~~~~-~G~~V~~ 74 (253)
T PRK11523 18 KERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKG-SGIHVVS 74 (253)
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CeeEEec
Confidence 3578899999999999999999999999999 9999999999999999 9999965
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-07 Score=84.83 Aligned_cols=309 Identities=18% Similarity=0.156 Sum_probs=187.3
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEE--ecChHHHHH--HHHHHh-cCCC----CeEEEcCCCCCChHHHHHHcCC
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILV--SNGAKQSIL--QAVLAV-CSPG----DEVIIPAPFWVSYPEMARIADA 200 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i--t~g~~~al~--~~~~~l-~~~g----d~Vlv~~p~y~~~~~~~~~~g~ 200 (470)
.+|+.++...+.+||.+--|. |.|.+ .+|++.-+. ++++.. -..| +.+++++..+..-...+...|.
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~ 179 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGF 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCc
Confidence 489999999999999986664 34444 345543222 233333 2233 6899999999888888999999
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
+++.|+.+.+++ +|+|+|++.+.+++.++.+++|+. .|+ =++.+++|+++.+++ |..|..|.+.---..+-
T Consensus 180 ~VV~V~~~~~G~--VDlddLk~k~~~~~AalMiTnPsT-~Gv--FE~~I~ei~~ivH~~-Gg~vY~DGANlNA~vG~--- 250 (496)
T COG1003 180 KVVVVKCDENGN--VDLDDLRAKAEDNLAALMITNPST-LGV--FEEDIREICEIVHEA-GGQVYYDGANLNAIVGL--- 250 (496)
T ss_pred eEEEEecCCCCC--ccHHHHHHHhccceeEEEeccCcc-ccc--chhhHHHHHHHHHHc-CCEEEecCcchhhhhcc---
Confidence 999999986655 999999999999999999988864 233 356799999999999 99999998764322221
Q ss_pred ccccccCCCCCceEEEeccCccccc----ccceeeEEEcCHHHHHHHHH------H---------h----hhccCCCChH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNK------I---------Q----SQFTSGASSI 337 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~~----~G~r~G~~~~~~~~~~~l~~------~---------~----~~~~~~~~~~ 337 (470)
..-......|..+ -++|+|+. .|-..|=+.+..+++.-+-. . . ....+..|..
T Consensus 251 ---~rPGd~G~DV~Hl-NLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~ 326 (496)
T COG1003 251 ---ARPGDMGFDVVHL-NLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSAS 326 (496)
T ss_pred ---ccccccccceEEe-ecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcch
Confidence 1111111223333 36677643 33445555444443332211 0 0 0001111222
Q ss_pred HHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccCccCCcccCCCCCCCHHHH
Q 012124 338 SQKAGVAALG-LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESL 415 (470)
Q Consensus 338 ~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (470)
....+..++. . +.+.+++.-+.---+.+++.+.|+..-.+.+.+.. ...=+.++..... .+...+..++
T Consensus 327 il~~a~~YI~~m---G~~GL~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~HE~ild~r~l~------~~~Gv~~~Dv 397 (496)
T COG1003 327 ILPIAWAYIRMM---GADGLKQASEVAVLNANYIARRLKGYYPVPYTGENRVAHECILDARPLK------KETGVRALDV 397 (496)
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHhHHHHHHHhhhcCccccCCCCcceeEEEeechHhH------hhcCCcHHHH
Confidence 2222333333 3 35667777777777888999999863112221110 1111222322110 0112378899
Q ss_pred HHHHHHcCCEEEECCCCCC--CCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 416 CRYLLDKAQVALVPGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 416 ~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++|+. +|+.. |-..|- ..+.+-|=.+- +.++++.+++++.++.++.+.
T Consensus 398 AKrLlD-~GfHa-PT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 398 AKRLLD-YGFHA-PTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred HHHHHh-cCCCC-CcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999985 48753 334454 45677776665 678999999999888876654
|
|
| >PRK09464 pdhR transcriptional regulator PdhR; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.3e-11 Score=109.42 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=51.6
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++|||.++||++|||||+| |+.+|+.+|+|+.++| +|+||..
T Consensus 20 ~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~~~-~G~~V~~ 76 (254)
T PRK09464 20 EFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG-GGTFVQS 76 (254)
T ss_pred HHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecC-ceeEEec
Confidence 4679999999999999999999999999999 9999999999999999 9999965
|
|
| >PRK10421 DNA-binding transcriptional repressor LldR; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-10 Score=108.89 Aligned_cols=54 Identities=13% Similarity=-0.004 Sum_probs=51.6
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.|+||+||||.|+||+.|||||+| |+..|+.+|+|+.++| +|+||+.
T Consensus 12 ~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~Le~~GlV~~~~~-~G~~V~~ 68 (253)
T PRK10421 12 RALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRG-GGTFIRW 68 (253)
T ss_pred HHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCC-CeEEEec
Confidence 4579999999999999999999999999999 9999999999999999 9999975
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=85.72 Aligned_cols=176 Identities=16% Similarity=0.253 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHH----------HHHHcCCEEEEe
Q 012124 137 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPE----------MARIADATPVIL 205 (470)
Q Consensus 137 r~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~----------~~~~~g~~~~~v 205 (470)
|+.+-+-+.+-+|.....-+.-+. ++++||..++..+++|||+.+.-. --|..... .+...|.....+
T Consensus 67 RdtLe~vyA~vf~aE~a~VRpq~i-sGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v 145 (416)
T COG4100 67 RDTLERVYAQVFGAEAALVRPQII-SGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAV 145 (416)
T ss_pred hhHHHHHHHHHhccccceeeeeee-cchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeec
Confidence 444444444444533222223333 456899999999999999987532 23433333 356678888889
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEc-CCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEEeccccccccCCCCcccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~-~p~nPtG~~~s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
|+..++. +|.+.+++.+++++|+|.+. +..+-.--.++.+++++++++.++ +|++++++|.+|++|.-.. .|.-
T Consensus 146 ~Lt~~gk--iD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~--EPt~ 221 (416)
T COG4100 146 PLTADGK--IDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEK--EPTH 221 (416)
T ss_pred ccccCCc--ccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhcc--Cccc
Confidence 9876554 99999999999999999873 334433345788889999998876 4589999999999976332 2221
Q ss_pred cccCCCCCceEEEeccCcccccccce--eeEEEcCHHHHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWR--LGYIAGPKHFVAACN 324 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r--~G~~~~~~~~~~~l~ 324 (470)
-+..+..+|+-|.-| .|+- -||+.+.++++++..
T Consensus 222 ------vGaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 222 ------VGADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred ------cchhhhccceeeCCC-CceeeccceeechHHHHHhhc
Confidence 234477899999876 5543 389999999988753
|
|
| >PRK03837 transcriptional regulator NanR; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-10 Score=105.62 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++|||.|+||++|||||+| |+..|+.+|+|+.++| +|+||..
T Consensus 23 ~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~~~-~G~~V~~ 79 (241)
T PRK03837 23 EQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQISHG-ERARVSR 79 (241)
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecC-CceeEec
Confidence 3578999999999999999999999999999 9999999999999999 9999965
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.3e-06 Score=86.88 Aligned_cols=328 Identities=13% Similarity=0.116 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhcCCC-eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----cCcHHHHHHHHHHHHHHcCCCCC
Q 012124 80 VAITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
.++....+.+..+++. ...++.|.-+.-.|..+.+.+.+.- ...+.|+|. +|..+..=..+..+....|.++.
T Consensus 64 ~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~-~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~va 142 (954)
T PRK12566 64 QAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENP-GWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLA 142 (954)
T ss_pred HHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCc-hhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhh
Confidence 3444555556555542 2345566666556776655444321 114556654 56666555566666666676543
Q ss_pred CCcEEEecChHHHHHHHHHHh---cCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 154 PDQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
|--+-.+++.+-+.++.+. -+...+|+|++-.+|.+..+++. .|.+++. +++++.+.+
T Consensus 143 --NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~ 207 (954)
T PRK12566 143 --NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAH 207 (954)
T ss_pred --hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCC
Confidence 4344445555444444333 12256899999999998877654 5666553 223344555
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEe---ccCccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN---GFSKAF 303 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~---S~sK~~ 303 (470)
++.++++.+|+. .|.+-+ +++|.++++++ |.++| +.+.- +.. .+..-+++.+-.|.++ +|.=.+
T Consensus 208 ~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~-gal~~-~~~d~-laL------~ll~~Pge~GADI~vG~~Q~fGvp~ 274 (954)
T PRK12566 208 AVFGALLQYPDT-HGEIRD---LRPLIDQLHGQ-QALAC-VAADL-LSL------LVLTPPGELGADVVLGSTQRFGVPM 274 (954)
T ss_pred CEEEEEEECCCC-ceEEcc---HHHHHHHHHHc-CCEEE-EEeCH-HHH------hCCCChhhcCCcEEeeCCCcCCCCC
Confidence 677888888875 677754 88999999998 77766 22211 111 1111233355667777 455556
Q ss_pred ccccceeeEEEcCHHHHHHH----------------------------HHHhhhccCCCChHHHHHHHHHHhcCCCChHH
Q 012124 304 AMTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEV 355 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~ 355 (470)
+..|--.||+.+.+++.+.+ ++-+...+.|++......++.+...- .+.+.
T Consensus 275 ~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~-~Gp~G 353 (954)
T PRK12566 275 GYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVY-HGPEG 353 (954)
T ss_pred CCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHH-hChHH
Confidence 66677789999888776553 44455566666654443333322110 14677
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEE--eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL--FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
++++.++...+..++.+.|.+. |+++... .||= .+++.. +..++.++..++ ||-++--
T Consensus 354 l~~ia~~~~~~a~~l~~~l~~~-g~~~~~~--~fF~~~~v~~~~-------------~~~~~~~~a~~~-~~n~r~~--- 413 (954)
T PRK12566 354 LKRIAQRVHRLTAILAAGLEAK-GIKRLNR--HFFDTLTLEVGG-------------AQAAIIESAEAA-RINLRIL--- 413 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCccccC--CccceEEEEccC-------------CHHHHHHHHHHC-CCeeEEe---
Confidence 8898888888999999999884 8876432 4442 223311 355676665544 7766542
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 434 GDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 434 ~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
.++.+.+|+.- +.++++..+..+.
T Consensus 414 -~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 414 -GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred -CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 24578888875 7888988888773
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-08 Score=96.84 Aligned_cols=255 Identities=20% Similarity=0.174 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHc-CCCCCCCCcCcHHHH-HHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCC
Q 012124 109 PVLIAEAGINAIRE-GFTRYTPNAGTLELR-SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186 (470)
Q Consensus 109 ~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr-~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p 186 (470)
++++++++.+.... ....|.-..|..--| ..+.+.+... +..+..+++++...|+.+++.++. +|.+|++..-
T Consensus 19 ~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~l----tgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRG 93 (367)
T PF03841_consen 19 SEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCEL----TGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRG 93 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccc-cccccccccc
Confidence 56666666665443 123332222222222 2223333322 245677888888899998888875 5667776532
Q ss_pred ---CC---CChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC--cccCCCHHHHHHHHHHHHh
Q 012124 187 ---FW---VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP--TGSVYPKNLLDEIARIVAK 258 (470)
Q Consensus 187 ---~y---~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP--tG~~~s~~~~~~l~~~~~~ 258 (470)
.+ +...++++..|++++.|-... .-.+++++++++++|.+++..+++|- .|..-+. .++++++++++
T Consensus 94 elVeiGgsFRip~vm~~sGa~lvEVGttN----~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~-~~~el~~la~~ 168 (367)
T PF03841_consen 94 ELVEIGGSFRIPDVMRQSGARLVEVGTTN----RTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEV-SLEELAELAKE 168 (367)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccc-cHHHHHHHHhh
Confidence 11 224567888999999888642 24788899999999999987777664 3433222 38899999999
Q ss_pred CCCEEEEEeccccccc----cCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC
Q 012124 259 HPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334 (470)
Q Consensus 259 ~~~~~iI~Dd~~~~~~----~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~ 334 (470)
| ++++|+|-.-+.+. |+-...++++.... .+-.+++.|-.|.+| |...|.+++.+++++++++..-.-.+-.
T Consensus 169 ~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGdKlLG--GPQaGiI~Gkk~lI~~lk~~pl~Ralrv 244 (367)
T PF03841_consen 169 H-GLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGDKLLG--GPQAGIIVGKKELIEKLKKHPLGRALRV 244 (367)
T ss_dssp H-T--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETTSSSS--S-S-EEEEEEHHHHHHHHHHHHTTT-B-
T ss_pred c-CCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECCCcCC--CCCeEEEEeCHHHHHHHhhCCCcceEee
Confidence 9 99999997764321 22223455555544 466788999999985 4558999999999999987655455556
Q ss_pred ChHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 335 SSISQKAGVAALGLGYA---------GGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
......++.+.|+.-.. ..+.+....+.++++.+.+...|...
T Consensus 245 dK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 245 DKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp -HHHHHHHHHHHHH--------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 77777777766653110 01224444556666777777776653
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR03337 phnR transcriptional regulator protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-10 Score=102.83 Aligned_cols=56 Identities=9% Similarity=-0.054 Sum_probs=52.5
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
....|.+|.+.||+||||.++||++|||||.| |++.|+.+|+|+++.| +||||...
T Consensus 10 l~~~I~~g~~~~g~~lPsE~eLa~~~~Vsr~Tvr~Al~~L~~eGli~~~~g-~Gt~V~~~ 68 (231)
T TIGR03337 10 LSYQIRAGALLPGDKLPSERDLGERFNTTRVTIREALQQLEAEGLIYREDR-RGWFVSPP 68 (231)
T ss_pred HHHHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCeEEEeCC-CEEEECCc
Confidence 45679999999999999999999999999999 9999999999999999 99999653
|
This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-06 Score=77.43 Aligned_cols=327 Identities=9% Similarity=0.036 Sum_probs=184.8
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC-CCCC------CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG-FTRY------TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y------~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
..+|+.|--. .|+++++.+.+.+..- ..++ ....-...+.+...+.++..++++-+-+=+++-.|++..+.
T Consensus 6 ~~nFsaGPa~--lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~ 83 (365)
T COG1932 6 VYNFSAGPAA--LPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFA 83 (365)
T ss_pred CCCCCCCccc--CCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHH
Confidence 3566666433 3555555555444331 1111 11223345666666777778888755545556678888888
Q ss_pred HHHHHhcCCCCe--EEEcCCCCCChHHHHHHcCC--EEEEecCcCC-CCCccCHHhHhhhccCCceEEEEcCCCCCcccC
Q 012124 169 QAVLAVCSPGDE--VIIPAPFWVSYPEMARIADA--TPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243 (470)
Q Consensus 169 ~~~~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~--~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~ 243 (470)
.+...|+..+.. |..-..+-..+. -++..+- ++........ -+.-++++.+. +.++...|++|.-..-+|+-
T Consensus 84 ~~p~nLl~~~~~~yv~~g~Ws~~a~~-eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~ 160 (365)
T COG1932 84 MAPMNLLGKRGTDYVDTGAWSEFAIK-EAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVE 160 (365)
T ss_pred HHHHhhhcccCceeEeeeehhHhHHH-HHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceE
Confidence 888888866543 333222222222 2333443 2222221111 12223444332 33333345565555577887
Q ss_pred CCHHHHHHHHHHHHhC-CCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 244 YPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~-~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
++... .. ++.++|.|-.-..+. ....+..++ ++-.+.-|.+|..| ++.++.+++++++
T Consensus 161 v~~~p---------~~~~~~~~v~D~SS~ils----r~iDvsk~d------viyagaQKnlGpaG--ltvvIvr~~~l~r 219 (365)
T COG1932 161 VPELP---------DIGSDGLLVADASSAILS----RPIDVSKYD------VIYAGAQKNLGPAG--LTVVIVRPDLLER 219 (365)
T ss_pred ccCCC---------CCCCCceEEEecccHHhc----CCCChhHcc------eEEEehhhccCccc--eEEEEEcHHHHhc
Confidence 76211 11 136788887655432 122333332 55567889998667 8999999999888
Q ss_pred HHHH------------hhhccCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-e--e-cCC
Q 012124 323 CNKI------------QSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-K--M-SEP 385 (470)
Q Consensus 323 l~~~------------~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~--~-~~~ 385 (470)
+... .....++ +|.+.-+.+...++.-.. ...++.+.++-+++.+.|++.+.+- ++ . + ...
T Consensus 220 ~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~-~GGl~~~~~rn~~ka~~LY~~id~s-~fy~~~v~~~~ 297 (365)
T COG1932 220 AESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKS-QGGLEALEARNQAKAQLLYDWIDKS-DFYRNLVAKAN 297 (365)
T ss_pred ccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhC-Cccccccchhh
Confidence 7543 1112233 444444444444443111 3347788888899999999999875 32 1 1 134
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.+-+.+.+++.+. +-+..|+..+. +.|+...-| ....+.+|+|+.. +.++++..++-++.+.++
T Consensus 298 RS~mnV~f~~~~~-----------~ld~~fv~eae-~~gl~~lkG--hr~vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 298 RSRMNVTFTLVDA-----------ELDKGFVAEAE-AAGLIYLKG--HRSVGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred ccceeEEEEcCcH-----------HHHHHHHHHHH-HcCCceecc--ccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 5567788887653 13456666554 447777776 2345679999876 888888888888777654
Q ss_pred h
Q 012124 464 L 464 (470)
Q Consensus 464 ~ 464 (470)
.
T Consensus 364 ~ 364 (365)
T COG1932 364 Y 364 (365)
T ss_pred h
Confidence 3
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-06 Score=81.11 Aligned_cols=297 Identities=18% Similarity=0.178 Sum_probs=157.7
Q ss_pred HHHHcCCCCCCCcEEEecChHHH-HHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC-CCccCHHh
Q 012124 144 LKEENGLSYTPDQILVSNGAKQS-ILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKV 219 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~a-l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~ 219 (470)
+-+..|+. +-...++.+.++.. +.+.+.++. ..++.|+.+.-.+.+-...++.+|++++.||...++ ....|.+.
T Consensus 65 ~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ 143 (389)
T PF05889_consen 65 ALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEA 143 (389)
T ss_dssp HHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHH
T ss_pred HHHHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHH
Confidence 33345654 22445666544433 444444443 456888887766656667888999999999964333 33346777
Q ss_pred HhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC---CCCCce
Q 012124 220 LESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---GMWERT 293 (470)
Q Consensus 220 l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~---~~~~~~ 293 (470)
+++.+++ ...+.++++++.--+. -.+++++|+++|++| |+..|+..+|+--. ...+..+. ....-.
T Consensus 144 ie~~i~~~G~~~iLcvltttscfapr--~~D~i~~IakiC~~~-~IPhlvNnAYgvQ~-----~~~~~~i~~a~~~GRvd 215 (389)
T PF05889_consen 144 IEAKIEELGADNILCVLTTTSCFAPR--LPDDIEEIAKICKEY-DIPHLVNNAYGVQS-----SKCMHLIQQAWRVGRVD 215 (389)
T ss_dssp HHHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHH-T--EEEEGTTTTT------HHHHHHHHHHHHHSTCS
T ss_pred HHHHHHHhCCCCeEEEEEecCccCCC--CCccHHHHHHHHHHc-CCceEEccchhhhH-----HHHHHHHHHHHhcCCcc
Confidence 7777743 4455556555322222 233699999999999 99999999997410 01111110 001223
Q ss_pred EEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 294 LTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 294 i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
+++.|.-|.| +-+..-+.+.+ .+..+..+.+....-.+..+ .......++..| ............+...++.+
T Consensus 216 a~vqS~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp--~ld~~itLl~LG---~~g~~~ll~~r~~~f~~l~e 289 (389)
T PF05889_consen 216 AFVQSTDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASP--SLDLFITLLSLG---CTGYGALLKERKASFPYLKE 289 (389)
T ss_dssp EEEEEHHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhccc--chHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH
Confidence 7899999999 55555455554 45677777664433333233 333445555543 22333333333344444444
Q ss_pred HhccC---CCCee-cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE---E-EECCCCCC-------CCC
Q 012124 373 SFGEL---EGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV---A-LVPGDAFG-------DDT 437 (470)
Q Consensus 373 ~L~~~---~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI---~-v~pg~~f~-------~~~ 437 (470)
.|+++ -+-.+ ..|.....+.+.++...... . .+...|...|..+ || . |.|+..+. +-.
T Consensus 290 rl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~--~----k~~~~lgs~Lf~R-~VsG~RvV~~~~~~~tsh~~~yp~~ 362 (389)
T PF05889_consen 290 RLKKWAEEVGERLLETPRNHISMAFTLDTLYEIS--Q----KDGTFLGSMLFKR-GVSGIRVVTPGGKKQTSHSSNYPCP 362 (389)
T ss_dssp HHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCC--S----SHHHHHHHHHHHT-TEESSEEEETSSCEEETTSS--SSS
T ss_pred HHHHHHHHhhhhhcCCCCCCeeEEEECccchhhc--c----chhhhHHHHHHhC-CcccceeeccCCCcccccCCCCchH
Confidence 44432 03222 23444455556665431100 0 1346777888776 55 2 44443321 236
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 438 CIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
|+-++.+. +.+|++.++++|+++++
T Consensus 363 Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 363 YLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 78885554 99999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-09 Score=77.02 Aligned_cols=51 Identities=8% Similarity=-0.080 Sum_probs=47.4
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
..|..+.+.+|.+|||.++||+.++||++| ++++|+++|+|...+| .|+||
T Consensus 7 ~~i~~~~~~~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~~-~g~~v 60 (60)
T smart00345 7 EDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPG-SGTFV 60 (60)
T ss_pred HHHHcCCCCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CeeEC
Confidence 467788999999999999999999999999 9999999999999988 89875
|
|
| >PRK11414 colanic acid/biofilm transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6e-09 Score=95.07 Aligned_cols=53 Identities=8% Similarity=-0.155 Sum_probs=49.1
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.|+||+|||. ++||+.|||||++ |+..|+.+|+|+.+++ +|++|..
T Consensus 21 ~~~I~~g~l~pG~~L~e-~~La~~lgVSRtpVREAL~~L~~eGLV~~~~~-~g~~v~~ 76 (221)
T PRK11414 21 KHQLSIGALKPGARLIT-KNLAEQLGMSITPVREALLRLVSVNALSVAPA-QAFTVPE 76 (221)
T ss_pred HHHHHhCCCCCCCccCH-HHHHHHHCCCchhHHHHHHHHHHCCCEEecCC-CceeecC
Confidence 45789999999999996 7999999999999 9999999999999999 9999853
|
|
| >TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-09 Score=95.07 Aligned_cols=52 Identities=10% Similarity=-0.119 Sum_probs=49.2
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+|.++||++| +.++||++|||||+| |+..|+.+|+|+.++| +|+||..
T Consensus 22 ~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVReAL~~L~~eGlv~~~~~-~G~~V~~ 76 (212)
T TIGR03338 22 RAILSGELPPGAKL-NESDIAARLGVSRGPVREAFRALEEAGLVRNEKN-RGVFVRE 76 (212)
T ss_pred HHHHcCCCCCCCEe-cHHHHHHHhCCChHHHHHHHHHHHHCCCEEEecC-CCeEEec
Confidence 56899999999999 589999999999999 9999999999999999 9999965
|
This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter. |
| >PRK11534 DNA-binding transcriptional regulator CsiR; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-09 Score=95.32 Aligned_cols=53 Identities=9% Similarity=-0.109 Sum_probs=49.7
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||+|||. ++||++|||||++ |...|+.+|+|+.+++ +|+||..
T Consensus 17 ~~~I~~g~l~pG~~L~e-~eLae~lgVSRtpVREAL~~L~~eGlv~~~~~-~G~~V~~ 72 (224)
T PRK11534 17 KNDIIRGNFQPDEKLRM-SLLTSRYALGVGPLREALSQLVAERLVTVVNQ-KGYRVAS 72 (224)
T ss_pred HHHHHhCCCCCCCcCCH-HHHHHHHCCChHHHHHHHHHHHHCCCEEEeCC-CceEeCC
Confidence 46799999999999996 8999999999999 9999999999999999 9999965
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.8e-05 Score=69.72 Aligned_cols=214 Identities=15% Similarity=0.084 Sum_probs=114.7
Q ss_pred CHHhHhhhccC------CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC-cccccccC
Q 012124 216 DPKVLESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLP 287 (470)
Q Consensus 216 d~~~l~~~l~~------~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~-~~~~~~~~ 287 (470)
.++++|+.|.+ .+.+|++...|...|. ..|++..++|.+++++| ++..|+||+..+..-.|.- ....+.++
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh-~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-GVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc-CeEEEeeeeecCCCccCceeeehhcCCC
Confidence 45667776632 2334555444777774 67999999999999999 9999999999763322210 00111122
Q ss_pred CCCCceEEEeccCcccccccceeeEEEcCHHHHH-HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 288 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
. . .-+-+|||-| ..| ||..-+ +++. .-.++. .+++..+.-...+.+.++. -..+.+.+..+..
T Consensus 333 ~--P--pD~vTFSKK~-q~g---Gffh~~-~frpn~pYrif--NTWmGdP~k~lll~~vv~~-----I~~~~Ll~n~~~v 396 (484)
T KOG1405|consen 333 S--P--PDVVTFSKKF-QTG---GFFHDE-EFRPNEPYRIF--NTWMGDPSKNLLLEEVVQE-----IKREDLLNNVAHV 396 (484)
T ss_pred C--C--ccceehhhhh-hcC---ccccCc-ccCCCchHHHh--hhhcCChHHHHHHHHHHHH-----HhHHHHHHHHHHH
Confidence 1 1 1255799999 466 765433 2222 122222 2333333333333333332 1112233333334
Q ss_pred HHHHHHHhcc----CCCC-eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 367 RDFLVKSFGE----LEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 367 ~~~l~~~L~~----~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
-+.+.+.|.+ .||. .-... -|-|+.+++|... --+.++..+ +-+||.+--+ ....||+
T Consensus 397 G~~l~~gL~~Lq~~~p~~~~~~RG-rGTF~a~d~ps~~-----------~Rdk~i~~~-~~nGv~~GGC----g~~siRf 459 (484)
T KOG1405|consen 397 GKALLKGLLELQAKYPGKINNLRG-RGTFIAWDCPSGS-----------IRDKLILIA-RLNGVNLGGC----GDKSIRF 459 (484)
T ss_pred HHHHHHHHHHHHHhCchhhhcccc-cceEEEEeCCChH-----------HHHHHHHHH-HHcCceeccc----ccceeee
Confidence 4444444433 4552 22233 4555666998751 234555544 4458765221 2344555
Q ss_pred E--eecCHHHHHHHHHHHHHHHHh
Q 012124 442 S--YAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 442 s--~~~~~~~i~~~l~~l~~~l~~ 463 (470)
- +...+.-.+-.+++|.+++..
T Consensus 460 RPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 460 RPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred ccceeehhhhHHHHHHHHHHHhcc
Confidence 4 444777788888888887754
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00028 Score=67.39 Aligned_cols=324 Identities=15% Similarity=0.180 Sum_probs=179.5
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC--C-----C-----CeEE-EcCCCCC
Q 012124 123 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--P-----G-----DEVI-IPAPFWV 189 (470)
Q Consensus 123 ~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~--~-----g-----d~Vl-v~~p~y~ 189 (470)
+...|.-.++..-..+.+-..+....|++...|.|+--.|+...++.+.-+--+ | | +-|+ ..+-++.
T Consensus 129 n~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHY 208 (510)
T KOG0629|consen 129 NMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHY 208 (510)
T ss_pred CCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchh
Confidence 455565445554555556666666678766668888888888877766554211 2 1 3344 4567888
Q ss_pred ChHHHHHHcC---CEEEEecCcCCCCCccCHHhHhhhccC-Cce----EEE-EcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 190 SYPEMARIAD---ATPVILPTRISENFLLDPKVLESKLTE-KSR----LLI-LCSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 190 ~~~~~~~~~g---~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~----~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
+....+..+| -.++.|+.+..+ .+++++||+.|-. +.+ .++ .+......|..=+ +..++++|++|
T Consensus 209 Si~kaAa~lg~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~- 282 (510)
T KOG0629|consen 209 SIKKAAAFLGLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKH- 282 (510)
T ss_pred hHHHHHHHhccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhc-
Confidence 8888888888 577888887544 5999999998832 222 222 2333456676666 88999999999
Q ss_pred CEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-HHHHHHHHhhhccC------
Q 012124 261 RLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFTS------ 332 (470)
Q Consensus 261 ~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~------ 332 (470)
++|+.+|.+|++.. .......-+..+.. --=+-.+.+|.+| ..+.++..+...+ ++.+.......+-+
T Consensus 283 ~lWmHvDAAwGGglLmS~k~R~kl~Gier---a~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Y 358 (510)
T KOG0629|consen 283 KLWMHVDAAWGGGLLMSRKHRHKLTGIER---ANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFY 358 (510)
T ss_pred CEEEEeecccccccccChhhHhhccCccc---cCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCcee
Confidence 99999999998722 22111111111211 1123456789998 7778887665543 33332211111100
Q ss_pred -----CCChHHHHH-------HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-c--CCC-ceEEEeeecc
Q 012124 333 -----GASSISQKA-------GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-S--EPQ-GAFYLFIDFS 396 (470)
Q Consensus 333 -----~~~~~~q~a-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~--~~~-~g~~~~~~~~ 396 (470)
......|.. .-..++.- +....++..+.+-+..+++.+.+++-+|... . .|+ .++.+|..-+
T Consensus 359 dvS~DTgdK~iQCGRh~D~FKlWlmwkaK--G~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~ 436 (510)
T KOG0629|consen 359 DVSYDTGDKAIQCGRHVDVFKLWLMWKAK--GTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPP 436 (510)
T ss_pred ecccccccchhhcCccccHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCch
Confidence 011111111 11111110 1234567777888899999999998766433 2 244 3455554332
Q ss_pred CccCCcccCCCCCC----CHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeec---CHHHHHHHHHHHHHH
Q 012124 397 TYYGSEAEGFGKIE----NSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA---SLTTLQAAVERIKKG 460 (470)
Q Consensus 397 ~~~~~~~~~~~~~~----~~~~l~~~L~~~~gI~v~pg~~f~-~~~~iRls~~~---~~~~i~~~l~~l~~~ 460 (470)
...+.+.+ .+... -+..+-.+++++ |-....=.+.+ .++++|+.++. +.++++-.++.|+.+
T Consensus 437 ~lR~~~~~-~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 437 SLRGWQEN-PERDSRLVKVAPKIKERMMKK-GTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred HhccCccc-chhhhHHHhhCcHHHHHHHhc-cceeeEecccccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 22111110 00000 012333444554 43322111111 24689998775 677888887777654
|
|
| >COG1802 GntR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-07 Score=84.39 Aligned_cols=53 Identities=4% Similarity=-0.142 Sum_probs=49.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.|+||+||. .++||++|||||++ |+.+|+++|+|+..++ +|+||..
T Consensus 26 r~~Il~g~l~pG~~l~-e~~La~~~gvSrtPVReAL~rL~~eGlv~~~p~-rG~~V~~ 81 (230)
T COG1802 26 REAILSGELAPGERLS-EEELAEELGVSRTPVREALRRLEAEGLVEIEPN-RGAFVAP 81 (230)
T ss_pred HHHHHhCCCCCCCCcc-HHHHHHHhCCCCccHHHHHHHHHHCCCeEecCC-CCCeeCC
Confidence 4579999999999998 99999999999999 9999999999999998 9999965
|
|
| >PF14502 HTH_41: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-07 Score=59.86 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhh--hhhcCCCccc
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLR--VMACSGVEEV 61 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~--s~~g~sG~~V 61 (470)
++|+|||++-++++.++|||.| |+..|++.|-|. ++ |.-|||+
T Consensus 1 k~GdRi~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~Le~r-Gh~GTfi 48 (48)
T PF14502_consen 1 KVGDRIPTISEYSEKFGVSRGTIQNALKFLEENGAIKLESR-GHLGTFI 48 (48)
T ss_pred CCCcccCCHHHHHHHhCcchhHHHHHHHHHHHCCcEEeeec-CcCcccC
Confidence 6899999999999999999999 999999999984 44 4488886
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00067 Score=65.60 Aligned_cols=320 Identities=13% Similarity=0.082 Sum_probs=168.4
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHcCCCC--------CCCcEEEecChHHHHHHHHHHh------cCCC-----------C
Q 012124 125 TRYTPNAGTLELRSAICHKLKEENGLSY--------TPDQILVSNGAKQSILQAVLAV------CSPG-----------D 179 (470)
Q Consensus 125 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~--------~~~~i~it~g~~~al~~~~~~l------~~~g-----------d 179 (470)
+.+...+-..||..-+-+||.+..+++. ++.-|+-++.+-.-+-.++.+- ++.+ +
T Consensus 103 FtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~ 182 (511)
T KOG0628|consen 103 FTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLAR 182 (511)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhh
Confidence 3344556778999999999998887642 2224444444444343333331 1222 1
Q ss_pred -eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCce-EE--EEcCCCCCcccCCCHHHHHHHHHH
Q 012124 180 -EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR-LL--ILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 180 -~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-~i--~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
.+...+.++.+........|.+...++.+. +++++.+.|.+++.++.. .+ ++...+--|..+-+.+++.+|..+
T Consensus 183 lV~Y~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~V 260 (511)
T KOG0628|consen 183 LVAYCSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPV 260 (511)
T ss_pred heEEecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcch
Confidence 345678888899999999999999999864 889999999999965322 11 111122223344567789999999
Q ss_pred HHhCCCEEEEEeccccccccCCCCcccc-cccCC------C-CCceEEEeccCcccccccceee-EEEcCH-HHHHHHHH
Q 012124 256 VAKHPRLLVLSDEIYEHIIYAPATHTSF-ASLPG------M-WERTLTVNGFSKAFAMTGWRLG-YIAGPK-HFVAACNK 325 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~~~~~~~~-~~~~~------~-~~~~i~i~S~sK~~~~~G~r~G-~~~~~~-~~~~~l~~ 325 (470)
|+++ ++|+.+|.+|++-.+.-+....+ ..++. . ..-.++-..-|-.|==-|.++. +..+.+ .+..+...
T Consensus 261 c~~~-glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~ 339 (511)
T KOG0628|consen 261 CREE-GLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG 339 (511)
T ss_pred hhhc-CEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhc
Confidence 9999 99999999999644322111111 10100 0 0111111111111100111111 111111 11111110
Q ss_pred HhhhccCCCChHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccC
Q 012124 326 IQSQFTSGASSISQKAGVAALGLG-------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFST 397 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~ 397 (470)
. ...-..-|..+..-++.- .++-+-+++..+..-+..+.+.+.+.+-+.+++..+. -|+ +++++.+
T Consensus 340 ~-----~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgL-vcFRlk~ 413 (511)
T KOG0628|consen 340 S-----APDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGL-VCFRLKG 413 (511)
T ss_pred c-----CCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccce-eEEeecC
Confidence 0 000111111111111110 0011112222222222333444444443456654443 366 5667654
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~~ 464 (470)
. .+..+.+.+++-....|.+.|.. +...-.+|++++. ++++++++-+.|.+....+
T Consensus 414 ~----------N~~ne~Ll~~in~~g~i~l~~~~-l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 414 D----------NEINEALLNRLNSSGRIHLVPAS-LHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred C----------cHHHHHHHHHHHhcCcEEEEEee-ecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2 12567888888877788888854 3333468999886 7789999988888877653
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0041 Score=57.11 Aligned_cols=333 Identities=12% Similarity=0.089 Sum_probs=190.7
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCc-------CcHHHHHHHHHHHHHHcCCCCCCCcEEEecC
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNA-------GTLELRSAICHKLKEENGLSYTPDQILVSNG 162 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~--~~~~y~~~~-------g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g 162 (470)
+.++.|.|+.+...+ .|....+.+.+.+.. ...-|+... +.......++.. -| ...++|.+.++
T Consensus 64 ~d~~~iYlcGNSLGL-mPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~i----VG--A~e~EvavmNs 136 (465)
T KOG3846|consen 64 DDKPVIYLCGNSLGL-MPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPI----VG--AQENEVAVMNS 136 (465)
T ss_pred CCCCeEEEecccccc-CchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhh----cc--CCchhhhhHhh
Confidence 445677777666554 355555555555543 122233222 223333333333 34 47789999999
Q ss_pred hHHHHHHHHHHhcCCC---CeEEEcCCCCCChHH----HHHHcCCEE----EEecCcCCCCCccCHHhHhhhccC---Cc
Q 012124 163 AKQSILQAVLAVCSPG---DEVIIPAPFWVSYPE----MARIADATP----VILPTRISENFLLDPKVLESKLTE---KS 228 (470)
Q Consensus 163 ~~~al~~~~~~l~~~g---d~Vlv~~p~y~~~~~----~~~~~g~~~----~~v~~~~~~~~~~d~~~l~~~l~~---~~ 228 (470)
-+-.+..++.+|.+|- -+|+++.-.||+-.- .++..|..+ +.+.- .++...+..+++.+.|.. ..
T Consensus 137 LTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~ieP-REGEetlRteDILd~IEkngDei 215 (465)
T KOG3846|consen 137 LTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEP-REGEETLRTEDILDTIEKNGDEI 215 (465)
T ss_pred hhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecc-cccccchhHHHHHHHHHhcCCeE
Confidence 9999999999998775 479999988887443 345566653 22222 245556788888888853 34
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
.+|++...|+-||+.++ +.+|-. |.+.+|++|=.|-+++. +. .++.-. +++..+.+..--|-++ +|.
T Consensus 216 A~v~fSGvqyYTGQ~Fd---i~aIT~-Agq~kgc~VGfDLAHAv----gN--VpL~LH--dWgVDFACWCSYKYln-aGa 282 (465)
T KOG3846|consen 216 ALVCFSGVQYYTGQYFD---IGAITF-AGQFKGCLVGFDLAHAV----GN--VPLQLH--DWGVDFACWCSYKYLN-AGA 282 (465)
T ss_pred EEEEeecceeecccccc---hhhhhh-cccCCCcEechhhhhhh----cC--CceEEe--ecCCceEEEeeecccc-cCC
Confidence 45566778999999999 777774 44444899988888874 22 222211 2566677776667663 321
Q ss_pred -eeeEEEcCHHHH----HHHH---------------------HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 309 -RLGYIAGPKHFV----AACN---------------------KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 309 -r~G~~~~~~~~~----~~l~---------------------~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
.+|-+....+.. .++. ....+...+++.+...++...|+.- .+-.++++|++
T Consensus 283 GgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F--~q~~~~~lRkr 360 (465)
T KOG3846|consen 283 GGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELF--AQFNINELRKR 360 (465)
T ss_pred CccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHH--HHhhHHHHhhh
Confidence 244444433322 1221 1111122345555555555544420 11223444433
Q ss_pred ---HHHHHHHHHHHhccCC--------CCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012124 363 ---FRERRDFLVKSFGELE--------GVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427 (470)
Q Consensus 363 ---~~~~~~~l~~~L~~~~--------g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 427 (470)
+....+++.+...... -+.+..| +.|..+-+.+.. +...+.+.|-++ |+..
T Consensus 361 S~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-------------p~~~vfqeL~kr-Gv~~ 426 (465)
T KOG3846|consen 361 SLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-------------PTPKVFQELHKR-GVIG 426 (465)
T ss_pred hhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC-------------CchHHHHHHHHc-Ceec
Confidence 3333444444443211 1233333 235555555543 345777887655 8765
Q ss_pred ECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012124 428 VPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 428 ~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~~~ 465 (470)
-. ..++.||++... +-.++..++..|.+++..+.
T Consensus 427 Dk----R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 427 DK----RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred cc----cCCCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 32 246889999775 77899999999999887654
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.3e-06 Score=62.78 Aligned_cols=51 Identities=6% Similarity=-0.114 Sum_probs=46.2
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
..|..+.+.+|.++|+.++||+.++||++| ++..|+++|+|+...+ .|+++
T Consensus 12 ~~i~~~~~~~~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~~-~~~~l 65 (66)
T cd07377 12 EAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPG-RGTFV 65 (66)
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC-CeEEe
Confidence 456778889999999999999999999999 9999999999998877 78776
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=61.94 Aligned_cols=298 Identities=17% Similarity=0.205 Sum_probs=148.1
Q ss_pred HHcCCCCCCCcEEEecChHHHHHHHHHHhc--CCCCe-EEEcCCCCCChHHHHHHcCCEEEEecCcCCC-CCccCHHhHh
Q 012124 146 EENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDE-VIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLE 221 (470)
Q Consensus 146 ~~~g~~~~~~~i~it~g~~~al~~~~~~l~--~~gd~-Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~ 221 (470)
...|+..-.+.+++---+-..+.+.+..+. .|..+ |+-..-.--+....+-.+|.+++-+.--.++ ...-|++.++
T Consensus 68 ~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~ 147 (432)
T KOG3843|consen 68 HLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVE 147 (432)
T ss_pred HHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHH
Confidence 345666555666654333334555665553 34433 3222222222333445688887766543333 2334778888
Q ss_pred hhccC-CceEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc---CCCCCceEEE
Q 012124 222 SKLTE-KSRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL---PGMWERTLTV 296 (470)
Q Consensus 222 ~~l~~-~~~~i-~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~---~~~~~~~i~i 296 (470)
+.+.+ ...+| ++.+... .=..-+++++++|+.+|..| ++.-|+..+|+--. ...+..+ .....-..++
T Consensus 148 ~~iee~g~dcilci~stts-cfapr~pd~leaiaaica~~-diphivnnayglqs-----ee~i~~iaa~~~~grida~v 220 (432)
T KOG3843|consen 148 AIIEELGEDCILCIHSTTS-CFAPRSPDNLEAIAAICAAH-DIPHIVNNAYGLQS-----EECIHKIAAAAECGRIDAFV 220 (432)
T ss_pred HHHHHhCCceEEEEeeccc-ccCCCCCchHHHHHHHHHcc-Cchhhhccccccch-----HHHHHHHHHHhhhccHHHHH
Confidence 87754 33333 2322111 11233778899999999999 99999999997411 1122211 1112223578
Q ss_pred eccCcccccccceeeEEE--cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-GGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~--~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
.|+.|.|-.| .. |.++ ....+++.+.+.........|+. ..+..+|..|.. ..+.+.+..+.+...++.+.+.
T Consensus 221 qsldknf~vp-vg-gaiia~fk~n~iq~iak~ypgrasa~ps~--dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ 296 (432)
T KOG3843|consen 221 QSLDKNFMVP-VG-GAIIAAFKDNFIQEIAKMYPGRASASPSL--DLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKF 296 (432)
T ss_pred HHhhhcceee-cc-hhHhhHhHHHHHHHHHHhCCCccccCccH--HHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999533 21 3444 35667877777654444334443 334444444321 1233344444444444444433
Q ss_pred hccCCCCeecCCCceEEEeeec---cCccCCcccCCCCCCCH-HHHHHHHHHcCCE---EEECCCC---------C---C
Q 012124 374 FGELEGVKMSEPQGAFYLFIDF---STYYGSEAEGFGKIENS-ESLCRYLLDKAQV---ALVPGDA---------F---G 434 (470)
Q Consensus 374 L~~~~g~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~-~~l~~~L~~~~gI---~v~pg~~---------f---~ 434 (470)
-+.+...-...|..-+.+...+ ++.. ..+ ..|-..|..+ || .|.|... | +
T Consensus 297 ae~~~e~l~~~p~n~is~amtl~ti~~~k----------~kavt~~gsilfak-~isgarvv~~~q~kttieg~ef~~f~ 365 (432)
T KOG3843|consen 297 AEAIGECLLETPENEISLAMTLKTIDEAK----------DKAVTLFGSILFAK-GISGARVVPLGQMKTTIEGCEFIGFG 365 (432)
T ss_pred HHHhhhhhhcCCCchhhhhhhhccCChHH----------hhHHHHHHHHHHhc-cccCceEeeccccceeeeceEEeccc
Confidence 3333222233344433333333 2210 011 2233344444 44 3333222 1 1
Q ss_pred C------CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 435 D------DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 435 ~------~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
. -+|+-...+. +..++++++.||...+..++
T Consensus 366 sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~ 404 (432)
T KOG3843|consen 366 SHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFR 404 (432)
T ss_pred cccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHH
Confidence 1 1244444333 77899999999988876543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=64.45 Aligned_cols=230 Identities=13% Similarity=0.169 Sum_probs=141.6
Q ss_pred eEEccCCCCCCCC-hHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 96 VIRLAAGEPDFDT-PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 96 ~i~l~~g~~~~~~-~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
-+||+..+-.... .-.....+...+.. ..+-|.++.|...+|..|+.|++..++++.++++|+|.++-..|++.+++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1082)
T PLN02672 389 SLDLSFEDESVADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRL 468 (1082)
T ss_pred hccccccccccchhhccHHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHh
Confidence 4555544432221 11234455555544 467798999999999999999999999999999999999999999888876
Q ss_pred h------cCCCCeEEEcCCCCCChHHHHHHcC----------CEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCC
Q 012124 174 V------CSPGDEVIIPAPFWVSYPEMARIAD----------ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSP 236 (470)
Q Consensus 174 l------~~~gd~Vlv~~p~y~~~~~~~~~~g----------~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p 236 (470)
+ ++.+.+-.++. .|...+...| +.++.-|. .-|.+.+.++. ++++++..-.
T Consensus 469 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 536 (1082)
T PLN02672 469 FSPRLAIVDEHLTRWLPK----KWLTSLAIENATSDSKSDDVITVIEAPR--------QSDLVIELIKKLKPQVVVTGMA 536 (1082)
T ss_pred hChHHHhhhhhhhccCCH----HHHhHhhhhcccccCccCCeEEEEeCCC--------cchHHHHHHHhCCCeEEEEecc
Confidence 5 23332222211 1222222222 12222221 11233444433 6777765443
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc-ccccccCCCCcccccccC--CCCCceEEEeccCcccccccceeeEE
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIYAPATHTSFASLP--GMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~-~~~~~~~~~~~~~~~~~~--~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
+. -..+....+.|++.+++. |.+++.|.. |-++.-......-+..+. +...+..++..+-|.-=.+.+-+.++
T Consensus 537 ~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (1082)
T PLN02672 537 DF---EMRTSTAFEHLLNVTAEI-GARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFV 612 (1082)
T ss_pred ch---hhhhHHHHHHHHHHHHhh-CcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEE
Confidence 32 223445588999999999 999999987 334332222222222221 12345566667777765689999999
Q ss_pred Ec-CHHHHHHHHHHhhhccCCCChHHHHH
Q 012124 314 AG-PKHFVAACNKIQSQFTSGASSISQKA 341 (470)
Q Consensus 314 ~~-~~~~~~~l~~~~~~~~~~~~~~~q~a 341 (470)
+. +..+...+.+........++.+.|.-
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1082)
T PLN02672 613 ISENEAVLKALSKTGEVLEGRTAIISQFY 641 (1082)
T ss_pred ecCcHHHHHHHHHHHHhhccchHHHHHHH
Confidence 85 56677888777766666777777754
|
|
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=4.5e-05 Score=64.03 Aligned_cols=46 Identities=7% Similarity=-0.096 Sum_probs=41.4
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCC
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSG 57 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~s 57 (470)
.+|..+.+.||. ++|.++||+.++||+++ |+.+|..+|+|++++| +
T Consensus 13 ~~i~la~~~~g~-~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G-~ 61 (141)
T PRK11014 13 ALIYMASLPEGR-MTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG-K 61 (141)
T ss_pred HHHHHhcCCCCC-ccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecC-C
Confidence 356678888885 78999999999999999 9999999999999998 5
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.23 Score=50.67 Aligned_cols=302 Identities=17% Similarity=0.193 Sum_probs=165.7
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEe--cChH---HHHHHHHHH-hcCCC----CeEEEcCCCCCChHHHHHHcCC
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVS--NGAK---QSILQAVLA-VCSPG----DEVIIPAPFWVSYPEMARIADA 200 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it--~g~~---~al~~~~~~-l~~~g----d~Vlv~~p~y~~~~~~~~~~g~ 200 (470)
+|+.++-..+..+|..--|. |++.+. +|++ .+|. ++++ +...| ..-+++...+......+..+|.
T Consensus 578 qGY~~lf~~Le~~Lc~iTG~----D~~s~QPNsGA~GEYaGL~-~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magm 652 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITGF----DSFSLQPNSGAQGEYAGLR-VIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGM 652 (1001)
T ss_pred hhHHHHHHHHHHHhheeecc----cceeecCCCCcccchhhHH-HHHHHHHhccCCcceeEEEeecccCCChhhHHhcCC
Confidence 78889999999888765443 455553 3333 2344 3333 33344 2346677777666677889999
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 277 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~ 277 (470)
++++|..+..++ +|..+|.+...+ +-.++.++.|+.- |+ =++.+++++++.++| |--|..|.+.-.-.
T Consensus 653 kvvpV~~~~~G~--id~~dLk~kaekh~~~Laa~MvTYPST~-Gv--fE~~i~d~cd~iHeh-GGQVYlDGANMNAq--- 723 (1001)
T KOG2040|consen 653 KVVPVGCDANGN--IDMVDLKAKAEKHKDNLAALMVTYPSTH-GV--FEEGIDDICDIIHEH-GGQVYLDGANMNAQ--- 723 (1001)
T ss_pred EEEEeeccCCCC--ccHHHHHHHHHHhhhhhheeEEeccccc-cc--ccccHHHHHHHHHhc-CCEEEecCCCccce---
Confidence 999999986655 999999887743 4456677777531 22 234489999999999 88999897753211
Q ss_pred CCcccccccCCCCCceEEEeccCcccccc----cceeeEEEcCHHHHHHHHHHh-----------hhccCC----CChHH
Q 012124 278 ATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGPKHFVAACNKIQ-----------SQFTSG----ASSIS 338 (470)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~i~S~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~-----------~~~~~~----~~~~~ 338 (470)
..+.. +++.+..+.=--+.|+|++| |-.+|=+...++++.-+-... ...+.+ .+...
T Consensus 724 ---VGlc~-pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~I 799 (1001)
T KOG2040|consen 724 ---VGLCR-PGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALI 799 (1001)
T ss_pred ---ecccC-CccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCccee
Confidence 11111 11122223333466777543 333444444444433321100 000000 11111
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc--eEEEeeeccCccCCcccCCCCCCCHHHHH
Q 012124 339 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG--AFYLFIDFSTYYGSEAEGFGKIENSESLC 416 (470)
Q Consensus 339 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (470)
.-+..++++.- +...+++..+.-.-+.++|.+.|+..=.+-+....+ +.=+.+++.+.- . ....++.+++
T Consensus 800 LpISwaYikmM--G~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK-----~-~agieavDvA 871 (1001)
T KOG2040|consen 800 LPISWAYIKMM--GSGGLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFK-----K-TAGIEAVDVA 871 (1001)
T ss_pred ehhHHHHHHHh--cccccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhc-----c-ccCCcHHHHH
Confidence 12223333321 123344444445557788888888741232322222 111234543321 0 0112678899
Q ss_pred HHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 417 RYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 417 ~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
++|. .+|+.. |-..|-..+.+-|-.+. +.++++.+++++-.+
T Consensus 872 KRL~-DYgFHa-PTmswPV~gtLMIEPTESE~k~ElDRfcdAliSI 915 (1001)
T KOG2040|consen 872 KRLM-DYGFHA-PTMSWPVAGTLMIEPTESEDKAELDRFCDALISI 915 (1001)
T ss_pred HHHH-hccCCC-CccccccCCceEeccCccccHHHHHHHHHHHHHH
Confidence 9986 567643 33445556777777665 557888887776444
|
|
| >TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00023 Score=63.23 Aligned_cols=41 Identities=5% Similarity=-0.164 Sum_probs=36.9
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhh-cCCCccccc
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA-CSGVEEVQV 63 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~-g~sG~~V~~ 63 (470)
|+| .++||+++||||++ |...|++.|+|++++ |.+||||..
T Consensus 198 rls-e~eLAerlGVSRs~ireAlrkLE~aGvIe~r~LG~kGt~V~~ 242 (251)
T TIGR02787 198 LLV-ASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 242 (251)
T ss_pred ccc-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCccEeCC
Confidence 554 89999999999999 999999999999999 745999965
|
This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam. |
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.77 Score=42.22 Aligned_cols=329 Identities=12% Similarity=0.096 Sum_probs=174.8
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc-CC-------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~-------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.+++|+.|-.. .|..+...+.+.+-+ .. ... .+.....+.+.-...+++.++++-+-+=+++..|++.-
T Consensus 7 ~vvnFaaGPAk--lp~~VL~e~qkdl~n~~g~GisV~EmSH-Rsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~q 83 (370)
T KOG2790|consen 7 RVVNFAAGPAK--LPESVLLEAQKDLLNFNGSGISVMEMSH-RSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQ 83 (370)
T ss_pred ceeecCCCccc--CCHHHHHHHHHHhhccCCCcceEEEecc-cchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCccc
Confidence 46788776443 354444444443322 11 111 12333455555556666777776444455667778877
Q ss_pred HHHHHHHhc--CCC---CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC-CCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 167 ILQAVLAVC--SPG---DEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 167 l~~~~~~l~--~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+..+...|+ +.| |-|+.-..+--.+..+-+......+..+..... +-.+|.+.++. +++.+.+++|.--..-
T Consensus 84 FaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETVH 161 (370)
T KOG2790|consen 84 FAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYCANETVH 161 (370)
T ss_pred ccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCccEEEEecCceee
Confidence 777776665 444 566655544333444434333334444443221 22356666654 3455577777655455
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|+-++.-- .-.-+ +.++|.|-.-..+. .+..+. ..-+++...-|.+|..| +-.++..++++
T Consensus 162 GVEf~~~P------~~~~~-~~vlVaDmSSnflS----rpvDvs------k~gvi~aGAQKN~G~aG--~Tvvivr~dll 222 (370)
T KOG2790|consen 162 GVEFDFIP------VNDPK-GAVLVADMSSNFLS----RPVDVS------KFGVIFAGAQKNVGPAG--VTVVIVRKDLL 222 (370)
T ss_pred ceecCCCC------CCCCC-CceEEEecccchhc----CCccch------hcceEEeccccccCccc--cEEEEEehhhh
Confidence 66554110 00123 77778776544321 112222 22355666889998777 45566677766
Q ss_pred HHHHHHh-----------hhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec--CC-
Q 012124 321 AACNKIQ-----------SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EP- 385 (470)
Q Consensus 321 ~~l~~~~-----------~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~- 385 (470)
.....+. ...-+ .+|.++.++.--.+++-. ....+..+.+.-.++.+.+++.+.+..|+-.. .|
T Consensus 223 g~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il-~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~ 301 (370)
T KOG2790|consen 223 GNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWIL-EKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPS 301 (370)
T ss_pred cccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchh
Confidence 5432211 01111 244444444333332210 02346677777888999999999876564221 11
Q ss_pred -CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 386 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 386 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
.+-|.+.+++.+. +-..+|.....+++ ..-.-|. ..-|.+|-|+-. +-++.++.++-++++.+
T Consensus 302 ~RS~MNV~Fri~~d-----------~Le~eFLkeA~~~~-mv~LKGh--RSVGGiRASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 302 VRSRMNVPFRIEKD-----------ELEAEFLKEAAKEH-MVQLKGH--RSVGGIRASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred hhhhcccceeecch-----------HHHHHHHHHHHHhh-hhccccc--cccccchhhhhccccHHHHHHHHHHHHHHHH
Confidence 3346666666532 13456666655553 3322332 234789999875 77887777777776654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.78 Score=46.97 Aligned_cols=308 Identities=15% Similarity=0.194 Sum_probs=151.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 101 AGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 101 ~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
+|.-+...|+.+.+-+.+.. ....+|+|. +|-.|-.--....+...-|.++.... ++--|+..+-..++..-.
T Consensus 125 mGYyn~~vP~~I~RNilenp-~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNAS-LLDEgTAaaEAm~l~~~~ 202 (1001)
T KOG2040|consen 125 MGYYNTHVPAVILRNILENP-GWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANAS-LLDEGTAAAEAMALCNRI 202 (1001)
T ss_pred cccccccCcHHHHHHhhhCC-cceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchh-hhccchhHHHHHHHHHhh
Confidence 33334344555554433321 124667664 33333222223333344566544322 222333322222222224
Q ss_pred CCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 176 SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
.++.++++..-+|+....+++. .|.+++.. |++....- .++...+++-.|.. -|.+.+ ..+
T Consensus 203 ~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~----------~~~~~~~s-~~~v~gvlvQYP~t-~G~i~d---~~e 267 (1001)
T KOG2040|consen 203 NKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS----------DIKEADYS-SKDVSGVLVQYPDT-EGSVLD---FDE 267 (1001)
T ss_pred cccceEEecCCCCcchhhhhhccccccceeEEec----------CHHHhhcc-ccceeEEEEEcCCC-CCcccC---HHH
Confidence 5677899999999999888764 33332222 22222221 22455666655543 577778 677
Q ss_pred HHHHHHhCCCEEEEEe-ccccccccCCCCcccccccCCCCCceEEEeccCccccc----ccceeeEEEcCHHHHHH----
Q 012124 252 IARIVAKHPRLLVLSD-EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAA---- 322 (470)
Q Consensus 252 l~~~~~~~~~~~iI~D-d~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~----~G~r~G~~~~~~~~~~~---- 322 (470)
+++.+++. +.+++.- |-.+ ..+..-+++.+..|.+||-- -||+ .|--.||+.+..++.+.
T Consensus 268 l~~~a~~~-~s~vv~atDLLa---------LtiLrpPgefGaDIavGSsQ-RFGVPlGYGGPHAaFfAv~~~l~R~mPGR 336 (1001)
T KOG2040|consen 268 LVELAHAN-GSLVVMATDLLA---------LTILRPPGEFGADIAVGSSQ-RFGVPLGYGGPHAAFFAVSESLVRMMPGR 336 (1001)
T ss_pred HHHHhhcc-CceEEEeehhhH---------HHccCChhhcCceeeecccc-ccCccccCCCchHHHHHHHHHHHhhCCCc
Confidence 78888888 7766532 2111 12222233456678888743 2332 22222233222222211
Q ss_pred -----------------H-------HHHhhhccCCCChHHH--HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 323 -----------------C-------NKIQSQFTSGASSISQ--KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 323 -----------------l-------~~~~~~~~~~~~~~~q--~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
+ ++-+...+.|+..... .++..++=+ +...++++.++.....-.+...|++
T Consensus 337 iiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYH---Gp~gL~~IArrvh~~T~~l~~~l~~ 413 (1001)
T KOG2040|consen 337 IIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYH---GPHGLKEIARRVHNLTLILAEGLKN 413 (1001)
T ss_pred eEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhc---CcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1112222222221111 111122223 3566788888888888888888887
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHH
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 454 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l 454 (470)
. |-++... .||=.+++.=. .+.+++..+.+++ +|-++- ..++.+-+++-. ++++++..+
T Consensus 414 a-ghel~~k--~fFDTLkI~~~-----------~s~~~~l~rA~~~-~iNlr~----~ed~tigvslDETv~~~DvddLl 474 (1001)
T KOG2040|consen 414 A-GHELQHK--PFFDTLKIRCG-----------CSAEEVLDRAAKR-QINLRL----VEDGTIGVSLDETVTEKDVDDLL 474 (1001)
T ss_pred c-chhhccc--cccceEEEEec-----------CcHHHHHHHHHhh-cCceEE----eecCceEEeecccccHHHHHHHH
Confidence 6 5444322 25433333211 1466777766555 454332 246778888875 778888888
Q ss_pred HHHH
Q 012124 455 ERIK 458 (470)
Q Consensus 455 ~~l~ 458 (470)
..+.
T Consensus 475 ~vf~ 478 (1001)
T KOG2040|consen 475 WVFN 478 (1001)
T ss_pred HHHc
Confidence 7664
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.00072 Score=46.44 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchh
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVL 50 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i 50 (470)
..|.--||++.||+.+|+|++| +.++|++.|||
T Consensus 20 ~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 20 KNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 3444789999999999999999 99999999997
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.0012 Score=50.98 Aligned_cols=41 Identities=7% Similarity=-0.206 Sum_probs=36.1
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
...-+|+++||+.+|+||.| +.++|+++|+|+...| +|+|-
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~-~~~~~ 87 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGM-MGIVG 87 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecC-Cceee
Confidence 35567799999999999999 9999999999998877 88873
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.0031 Score=48.93 Aligned_cols=37 Identities=0% Similarity=-0.217 Sum_probs=33.3
Q ss_pred CCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
+++||+.++||++| +++.|+++|||+..++ +++++++
T Consensus 2 ~~ela~~l~is~stvs~~l~~L~~~glI~r~~~-~~~~lT~ 41 (96)
T smart00529 2 TSEIAERLNVSPPTVTQMLKKLEKDGLVEYEPY-RGITLTE 41 (96)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCEEEcCC-CceEech
Confidence 47899999999999 9999999999999987 7877765
|
iron dependent repressor |
| >PRK12423 LexA repressor; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.0029 Score=56.58 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=34.0
Q ss_pred CCCCCCccccC-Ccccc---ccccccccchhhhhhcC-CCcccc
Q 012124 24 PAQIPGSVSFP-SRYLH---NFNLNNDRRVLRVMACS-GVEEVQ 62 (470)
Q Consensus 24 Ps~R~La~~l~-vs~~T---Ay~~L~~~G~i~s~~g~-sG~~V~ 62 (470)
||.|+||+.+| +|++| +.+.|+++|+|+..+++ +|++|.
T Consensus 26 Ps~~eia~~~g~~s~~~v~~~l~~L~~~G~l~~~~~~~~~~~v~ 69 (202)
T PRK12423 26 PSLAEIAQAFGFASRSVARKHVQALAEAGLIEVVPNQARGIRLP 69 (202)
T ss_pred CCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEecCCCcceeeec
Confidence 99999999999 59998 99999999999998752 466663
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.0049 Score=43.70 Aligned_cols=33 Identities=6% Similarity=-0.043 Sum_probs=26.9
Q ss_pred CCCCCCCccccCCc-ccc---ccccccccchhhhhhc
Q 012124 23 IPAQIPGSVSFPSR-YLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 23 lPs~R~La~~l~vs-~~T---Ay~~L~~~G~i~s~~g 55 (470)
=||.|++|+.+|++ .+| -.+.|++.|||...++
T Consensus 25 ~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 25 PPTVREIAEALGLKSTSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp ---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGCC
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCCC
Confidence 38999999999997 666 8899999999988766
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.0052 Score=42.09 Aligned_cols=36 Identities=0% Similarity=-0.243 Sum_probs=29.5
Q ss_pred CCCCCCccccCCcccc---ccccccccc-hhhhhhcCCCcc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRR-VLRVMACSGVEE 60 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G-~i~s~~g~sG~~ 60 (470)
=|..+||+.|+||+.| -.+.|.+.| .|++.+| .||+
T Consensus 16 it~~eLa~~l~vS~rTi~~~i~~L~~~~~~I~~~~~-~GY~ 55 (55)
T PF08279_consen 16 ITAKELAEELGVSRRTIRRDIKELREWGIPIESKRG-KGYR 55 (55)
T ss_dssp BEHHHHHHHCTS-HHHHHHHHHHHHHTT-EEEEETT-TEE-
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEeeCC-CCcC
Confidence 3577999999999999 888999999 7788888 7874
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.0082 Score=40.07 Aligned_cols=35 Identities=3% Similarity=-0.195 Sum_probs=27.7
Q ss_pred CCccccCCcccc---ccccccccchhhhhh-cCCCcccc
Q 012124 28 PGSVSFPSRYLH---NFNLNNDRRVLRVMA-CSGVEEVQ 62 (470)
Q Consensus 28 ~La~~l~vs~~T---Ay~~L~~~G~i~s~~-g~sG~~V~ 62 (470)
.+|++.|+.|+. |+..|++-|+|++|- |-+|||+-
T Consensus 9 ~iAd~~GiTRSvIVNALRKleSaGvIesrSlGmKGT~ik 47 (61)
T PF08222_consen 9 KIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 47 (61)
T ss_dssp HHHHHHT--HHHHHHHHHHHHHTTSEEEEETTSS-EEEE
T ss_pred HHHHHhCccHHHHHHHHHHHHhcCceeecccCCCceeee
Confidence 468999999999 999999999999986 44799974
|
CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C. |
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.0097 Score=39.43 Aligned_cols=28 Identities=4% Similarity=-0.071 Sum_probs=24.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLR 51 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~ 51 (470)
.|+++||+.+|+|++| ...+|+++|+|+
T Consensus 18 ~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 18 ITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp S-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 5789999999999999 999999999984
|
... |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.023 Score=41.00 Aligned_cols=39 Identities=3% Similarity=-0.210 Sum_probs=32.7
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
+..+||+.++||+.| ....|+++|+.....+ .|+++...
T Consensus 15 ~~~eLa~~l~vS~~tv~~~l~~L~~~g~~i~~~~-~g~~l~~~ 56 (69)
T TIGR00122 15 SGEKLGEALGMSRTAVNKHIQTLREWGVDVLTVG-KGYRLPPP 56 (69)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecC-CceEecCc
Confidence 478999999999999 8999999999544447 99998654
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.023 Score=42.70 Aligned_cols=42 Identities=5% Similarity=-0.188 Sum_probs=33.8
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
+.+-.|.++||+.+++|..+ ..++|.+.|+|++..|..|-|.
T Consensus 22 ~~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~ 66 (83)
T PF02082_consen 22 DGKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYR 66 (83)
T ss_dssp TSC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCcee
Confidence 33447899999999999999 9999999999999987445554
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.027 Score=40.19 Aligned_cols=36 Identities=0% Similarity=-0.216 Sum_probs=30.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.|.++||+.+|+|+.| ++++|+++|+|+... .|.|+
T Consensus 26 ~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~--~~~~~ 64 (67)
T cd00092 26 LTRQEIADYLGLTRETVSRTLKELEEEGLISRRG--RGKYR 64 (67)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC--CCeEE
Confidence 5788999999999999 999999999999874 35443
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.024 Score=37.28 Aligned_cols=30 Identities=0% Similarity=-0.191 Sum_probs=27.0
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.++++||+.+++|++| +..+|+++|+|+..
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4678999999999999 99999999999754
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.024 Score=39.51 Aligned_cols=35 Identities=0% Similarity=-0.190 Sum_probs=28.9
Q ss_pred CCCCCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 21 SKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
..-.+..+||+.|+||++| +..+|.++|||+-.+-
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~y 57 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEPY 57 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCC
Confidence 3446677999999999999 9999999999987653
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=88.46 E-value=0.061 Score=39.13 Aligned_cols=41 Identities=0% Similarity=-0.119 Sum_probs=33.1
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|..+- +++||+.+++|..| -...|++.|||++.++.||=||
T Consensus 21 ~~PVg-Sk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~s~Gri 64 (78)
T PF03444_consen 21 GEPVG-SKTIAEELGRSPATIRNEMADLEELGLVESQPHPSGGRI 64 (78)
T ss_pred CCCcC-HHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCCCCCCC
Confidence 33443 68899999999999 8999999999999876466666
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.021 Score=33.85 Aligned_cols=25 Identities=0% Similarity=-0.204 Sum_probs=21.9
Q ss_pred CCCCccccCCcccc---ccccccccchh
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRVL 50 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~i 50 (470)
..++|+.+|++|-| +..+|+++|+|
T Consensus 5 r~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 5 RQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 45899999999999 99999999986
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.074 Score=43.90 Aligned_cols=44 Identities=2% Similarity=-0.274 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.+|..-+|.++||+.+++++++ ..+.|...|||.+..|..|-|.
T Consensus 20 ~~~~~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~ 66 (132)
T TIGR00738 20 NPDEGPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYR 66 (132)
T ss_pred CCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCcc
Confidence 3666688999999999999999 9999999999998766344443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.11 Score=48.98 Aligned_cols=42 Identities=5% Similarity=-0.215 Sum_probs=38.3
Q ss_pred cCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcc
Q 012124 17 NFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEE 60 (470)
Q Consensus 17 ~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~ 60 (470)
|+-|.|+ |.|..|..|+||-+| |..+.+..|++++.++ +||.
T Consensus 14 L~vG~kI-SVR~Ia~~l~VSeGTAYRAIKeAen~G~V~Ti~R-vGTv 58 (432)
T COG4109 14 LEVGKKI-SVRGIAKHLKVSEGTAYRAIKEAENLGLVSTIPR-VGTV 58 (432)
T ss_pred cccccee-ehHHhhhhCCcccchHHHHHHHHHhcCceEeccc-ceeE
Confidence 6778887 699999999999999 8899999999999999 9983
|
|
| >COG1654 BirA Biotin operon repressor [Transcription] | Back alignment and domain information |
|---|
Probab=87.64 E-value=0.06 Score=39.63 Aligned_cols=38 Identities=3% Similarity=-0.157 Sum_probs=31.6
Q ss_pred CCCCCccccCCcccc---ccccccccch-hhhhhcCCCccccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEVQV 63 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V~~ 63 (470)
|--+||+.||+||++ ..++|+++|+ |+++++ +||-+..
T Consensus 21 SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~-kGY~L~~ 62 (79)
T COG1654 21 SGEKLAEELGISRTAVWKHIQQLREEGVDIESVRG-KGYLLPQ 62 (79)
T ss_pred cHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCC-CceeccC
Confidence 344789999999999 9999999998 677767 8987643
|
|
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.088 Score=46.98 Aligned_cols=32 Identities=6% Similarity=-0.078 Sum_probs=30.2
Q ss_pred CCCCCCccccCCc-ccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSFPSR-YLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l~vs-~~T---Ay~~L~~~G~i~s~~g 55 (470)
|+.|+||+.+|++ ++| ..+.|+++|+|+...|
T Consensus 26 ~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~~ 61 (199)
T TIGR00498 26 PSIREIARAVGLRSPSAAEEHLKALERKGYIERDPG 61 (199)
T ss_pred CcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCCC
Confidence 8899999999998 999 9999999999999866
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=0.07 Score=45.27 Aligned_cols=38 Identities=3% Similarity=-0.146 Sum_probs=33.2
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
++++||+.|+||++| ++++|+++|||..+++ .|++++.
T Consensus 53 t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~~-~~v~LT~ 93 (152)
T PRK11050 53 RQVDIAARLGVSQPTVAKMLKRLARDGLVEMRPY-RGVFLTP 93 (152)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CceEECc
Confidence 578999999999999 9999999999998776 6766654
|
|
| >PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=0.11 Score=50.06 Aligned_cols=38 Identities=0% Similarity=-0.203 Sum_probs=33.4
Q ss_pred CCCCccccCCcccc---ccccccccch-hhhhhcCCCcccccc
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEVQVD 64 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V~~~ 64 (470)
.-+||+.++|||+| +.+.|+++|+ |++..| +||++...
T Consensus 21 ~~~LA~~lgvsr~tV~~~l~~L~~~G~~i~~~~~-~Gy~L~~~ 62 (319)
T PRK11886 21 GEQLGEELGISRAAIWKHIQTLEEWGLDIFSVKG-KGYRLAEP 62 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCceEEecC-CeEEecCc
Confidence 34899999999999 9999999999 888888 89987553
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=84.89 E-value=0.13 Score=42.36 Aligned_cols=35 Identities=3% Similarity=-0.259 Sum_probs=31.1
Q ss_pred CCCCCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 21 SKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
..-.|.++||+.+++|+++ ..+.|++.|+|++..|
T Consensus 23 ~~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g 60 (130)
T TIGR02944 23 SQPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRG 60 (130)
T ss_pred CCCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCC
Confidence 3456899999999999999 9999999999998764
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=7.7 Score=34.66 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=68.5
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCeEE----E--cCC-CC----CCh---HHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 156 QILVSNGAKQSILQAVLAVCSPGDEVI----I--PAP-FW----VSY---PEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 156 ~i~it~g~~~al~~~~~~l~~~gd~Vl----v--~~p-~y----~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
-+.+-+|+.....++..++ +.|..|. + +++ +| ++. .-.++..|..++.....- ...-..++|.
T Consensus 3 ~~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g--~~e~eve~L~ 79 (223)
T COG2102 3 VIALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG--EEEREVEELK 79 (223)
T ss_pred EEEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc--cchhhHHHHH
Confidence 3677899999988766665 4564332 1 122 12 222 234677999988888753 2334677887
Q ss_pred hhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 222 SKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 222 ~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
++++. +...|+ +|.+.+..++.++-.+|++. |+.++
T Consensus 80 ~~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~l-Gl~~~ 116 (223)
T COG2102 80 EALRRLKVDGIV-------AGAIASEYQKERVERLCEEL-GLKVY 116 (223)
T ss_pred HHHHhCcccEEE-------EchhhhHHHHHHHHHHHHHh-CCEEe
Confidence 77754 555776 89999999999999999999 87765
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=84.40 E-value=0.099 Score=37.51 Aligned_cols=35 Identities=0% Similarity=-0.254 Sum_probs=29.0
Q ss_pred CCCCccccCCcccc---ccccccccchhhhhhcCCCcc
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEE 60 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~ 60 (470)
..+||+.||++++| ....|+++|+|+......++|
T Consensus 25 a~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W 62 (68)
T smart00550 25 ALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLW 62 (68)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 67999999999999 999999999998875412544
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=82.95 E-value=0.17 Score=42.88 Aligned_cols=42 Identities=2% Similarity=-0.122 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++. ..|++++|+.++||++. ....|...|+|+|..|..|-|.
T Consensus 21 ~~~-~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~ 65 (153)
T PRK11920 21 DGK-LSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVR 65 (153)
T ss_pred CCC-cCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCee
Confidence 344 45899999999999999 9999999999999998555554
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=82.89 E-value=0.06 Score=37.60 Aligned_cols=35 Identities=0% Similarity=-0.207 Sum_probs=27.8
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCC
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGV 58 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG 58 (470)
.+.|++|+.+|+|+.| -.+.|+++|.|+..+.++|
T Consensus 16 ~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~~~rG 53 (62)
T PF04703_consen 16 LKTREIADALGLSIYQARYYLEKLEKEGKVERSPVRRG 53 (62)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES-SSS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCCC
Confidence 5678999999999999 7899999999987542255
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=82.25 E-value=0.068 Score=38.34 Aligned_cols=31 Identities=0% Similarity=-0.137 Sum_probs=28.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+.+++|+.+|++++| +.+.|+++|+|+...+
T Consensus 24 t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 24 TAEEIAEELGISRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp EHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 457899999999999 9999999999998876
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.12 E-value=0.23 Score=41.90 Aligned_cols=44 Identities=2% Similarity=-0.215 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.++.++-|+.++|+..+||++- .+.+|...|+|+|++|..|=|+
T Consensus 20 ~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~ 66 (150)
T COG1959 20 LPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYR 66 (150)
T ss_pred CCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCcc
Confidence 4566666799999999999998 9999999999999998556555
|
|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=82.06 E-value=0.12 Score=34.66 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=28.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
++..+|++.+++|++| ..+.|+++|+|....+
T Consensus 15 ~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~ 49 (53)
T smart00420 15 VSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHG 49 (53)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 7899999999999999 8899999999987643
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=81.50 E-value=0.08 Score=37.04 Aligned_cols=31 Identities=3% Similarity=-0.194 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+.++||+.++++++| ..+.|+++|||+....
T Consensus 23 t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~ 56 (62)
T PF12802_consen 23 TQSELAERLGISKSTVSRIVKRLEKKGLVERERD 56 (62)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 588999999999999 9999999999987754
|
... |
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=81.41 E-value=0.22 Score=41.34 Aligned_cols=43 Identities=7% Similarity=-0.150 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++.+..|.+++|+.++++... ..++|...|||.+..|..|-|.
T Consensus 21 ~~~~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~ 66 (135)
T TIGR02010 21 AETGPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQ 66 (135)
T ss_pred CCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEe
Confidence 455678899999999999998 9999999999999777455554
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=81.26 E-value=21 Score=33.65 Aligned_cols=70 Identities=13% Similarity=0.237 Sum_probs=48.9
Q ss_pred EcCCCCCChHHHHHH--cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 183 IPAPFWVSYPEMARI--ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 183 v~~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
..-|+|++..++-+. -..-++.+|.. .-++.++++...+++.+++.+... +...-++|.++|+++
T Consensus 47 ~G~~~y~sv~dlp~~~~~Dlavi~vpa~------~v~~~l~e~~~~Gvk~avIis~Gf------~e~~~~~l~~~a~~~- 113 (286)
T TIGR01019 47 LGLPVFDSVKEAVEETGANASVIFVPAP------FAADAIFEAIDAGIELIVCITEGI------PVHDMLKVKRYMEES- 113 (286)
T ss_pred cCeeccCCHHHHhhccCCCEEEEecCHH------HHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHHc-
Confidence 445677777777665 35555666632 356788888888888877755543 333457899999999
Q ss_pred CEEEE
Q 012124 261 RLLVL 265 (470)
Q Consensus 261 ~~~iI 265 (470)
++.|+
T Consensus 114 giril 118 (286)
T TIGR01019 114 GTRLI 118 (286)
T ss_pred CCEEE
Confidence 99998
|
ATP citrate lyases appear to form an outgroup. |
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=80.38 E-value=0.12 Score=35.57 Aligned_cols=31 Identities=6% Similarity=0.031 Sum_probs=27.9
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+..+||+.|+||..| =+..|+++|+|....|
T Consensus 16 s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~G 49 (57)
T PF08220_consen 16 SVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTHG 49 (57)
T ss_pred EHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 567899999999999 8899999999988766
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 470 | ||||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 6e-92 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 8e-80 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 3e-79 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 4e-79 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-78 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-77 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 2e-77 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 2e-70 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 3e-70 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 6e-67 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 2e-47 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 7e-44 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 5e-43 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-42 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 1e-39 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-39 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 1e-38 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-38 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 5e-37 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 4e-33 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 2e-30 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 9e-30 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 2e-28 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-26 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 1e-24 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 3e-23 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 2e-22 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 5e-21 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 2e-20 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 3e-20 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 5e-20 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 2e-18 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 2e-18 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 2e-17 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 3e-17 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 9e-17 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 4e-16 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 6e-16 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 7e-16 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 5e-15 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 3e-14 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 4e-13 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 9e-13 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-12 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-12 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 5e-12 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 5e-12 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 7e-12 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 2e-11 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 5e-11 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 6e-11 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 1e-10 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 1e-10 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-10 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 4e-10 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 4e-10 | ||
| 3fdd_A | 533 | The Crystal Structure Of The Pseudomonas Dacunhae A | 5e-10 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 1e-09 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 1e-09 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 1e-09 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 4e-09 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 5e-09 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 5e-09 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 9e-09 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-08 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-08 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-08 | ||
| 4ge7_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 4gdy_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 3e-08 | ||
| 3ue8_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 4e-08 | ||
| 2xh1_A | 425 | Crystal Structure Of Human Kat Ii-Inhibitor Complex | 4e-08 | ||
| 2r2n_A | 425 | The Crystal Structure Of Human Kynurenine Aminotran | 4e-08 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 6e-08 | ||
| 2qlr_A | 425 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-07 | ||
| 2vgz_A | 427 | Crystal Structure Of Human Kynurenine Aminotransfer | 2e-07 | ||
| 2f8j_A | 347 | Crystal Structure Of Histidinol-phosphate Aminotran | 2e-07 | ||
| 1uu1_A | 335 | Complex Of Histidinol-Phosphate Aminotransferase (H | 3e-07 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 7e-07 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 9e-07 | ||
| 1h1c_A | 335 | Histidinol-Phosphate Aminotransferase (Hisc) From T | 1e-06 | ||
| 3get_A | 365 | Crystal Structure Of Putative Histidinol-Phosphate | 2e-06 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 2e-06 | ||
| 3fkd_A | 350 | The Crystal Structure Of L-Threonine-O-3-Phosphate | 3e-06 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 1e-05 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 1e-05 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 1e-05 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 4e-05 | ||
| 2c7t_A | 418 | Crystal Structure Of The Plp-Bound Form Of Btrr, A | 2e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 4e-04 |
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme Length = 533 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425 | Back alignment and structure |
|
| >pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425 | Back alignment and structure |
|
| >pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425 | Back alignment and structure |
|
| >pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427 | Back alignment and structure |
|
| >pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase (ec 2.6.1.9) (imidazole Acetol-phosphate Transferase) (tm1040) From Thermotoga Maritima At 2.40 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima (Apo-Form) Length = 335 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima Length = 335 | Back alignment and structure |
|
| >pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Np_281508.1) From Campylobacter Jejuni At 2.01 A Resolution Length = 365 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Porphyromonas Gingivalis Length = 350 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual Functional Aminotransferase Involved In Butirosin Biosynthesis. Length = 418 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 609 bits (1572), Expect = 0.0
Identities = 178/399 (44%), Positives = 244/399 (61%), Gaps = 15/399 (3%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
L+ RV +V PS T+ I +A A+ G+ V +AGEPDF+TP I EA A+ +G TR
Sbjct: 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTR 62
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y P AG LR AI KL+ +NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAP
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
FWVSYPEM ++A+ TPVILPT + F + P+ + +T K++LL+ +PSNPTG VY
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTP 182
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
+ + IA+ VA L VLSDEIYE I+Y A H S + P +ER++ +GF+K +AM
Sbjct: 183 DEVRAIAQ-VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+G++AGP V A KIQ TS + +Q +AA + V +M+ AF E
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYE---NSQDCVQEMLAAFAE 298
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RR +++ + + G++ +P GAFY+F + +S C LLD+ QV
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQV 348
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
A VPG AFG D CIR+SYA L T++ +ER++K L +
Sbjct: 349 ATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 595 bits (1537), Expect = 0.0
Identities = 142/393 (36%), Positives = 227/393 (57%), Gaps = 22/393 (5%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S R++ + SKT+ + +A AL + G VI L AGEPDF TP + E + +++G +
Sbjct: 14 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 73
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G ELR I ++ E +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P
Sbjct: 74 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
WVSY +A T ++ T +S+NF + +E L K++ +++ SP+NPTG VY +
Sbjct: 134 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 193
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
L+ + R +AK ++SDE+Y+ ++Y TS + ++R + +NGFSK+ +MT
Sbjct: 194 EFLEGLVR-LAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFSKSHSMT 251
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
GWR+GY+ + A +KIQS TS ++++Q A + AL S MV+ F+ER
Sbjct: 252 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKAL------EVDNSYMVQTFKER 305
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
++F+V+ ++ GVK EP+GAFYLF + C LL++ +VA
Sbjct: 306 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR-------------GDDVKFCERLLEEKKVA 351
Query: 427 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
LVPG AF +R+S+A S+ L A++RI+
Sbjct: 352 LVPGSAFLKPGFVRLSFATSIERLTEALDRIED 384
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 588 bits (1518), Expect = 0.0
Identities = 161/403 (39%), Positives = 224/403 (55%), Gaps = 20/403 (4%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
+LS R+ V S+ + D +A VI L GEPDFDTP I E A+ +G T
Sbjct: 2 ALSDRLELVSASEIRKLFD----IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT 57
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 184
Y PN G LELR AI KLK++NG+ P +I+V GA Q+ L + A G+EV+IP
Sbjct: 58 HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP 117
Query: 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P +VSY +A PV +PT + F L+ L+ +T+K+R LI+ SP NPTG+V
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL 177
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
K L+EIA V +H L+V+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FA
Sbjct: 178 TKKDLEEIADFVVEHD-LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 236
Query: 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364
MTGWRLG++A P + K Q + + Q A AL + V +M K +
Sbjct: 237 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKAL-KDERSWKAVEEMRKEYD 295
Query: 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
RR + K E+ G+ +P+GAFY+F S+ +L +A+
Sbjct: 296 RRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT----------GLTSKKFSELMLKEAR 344
Query: 425 VALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465
VA+VPG AFG + +RISYA + L+ A++R+++ L +
Sbjct: 345 VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERK 387
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 586 bits (1514), Expect = 0.0
Identities = 164/395 (41%), Positives = 231/395 (58%), Gaps = 16/395 (4%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
LS RV A+KPS TVA+ +A L + GV ++ L AGEPDFDTP + EA A+ +G T+
Sbjct: 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTK 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y P AG ELR A+ K + ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +P
Sbjct: 64 YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VYPK
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
+L+ +AR+ +H ++SDEIYEH++Y H S + E TLTVNG +KAFAMT
Sbjct: 184 EVLEALARLAVEHD-FYLVSDEIYEHLLYEGE-HFSPGRVAP--EHTLTVNGAAKAFAMT 239
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
GWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R R
Sbjct: 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRR 299
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
RD L++ L G+K P GAFY+ +D S + LL+ A VA
Sbjct: 300 RDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAP----------DEVRAAERLLE-AGVA 347
Query: 427 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461
+VPG F +R+SYA S L+ A+ER + L
Sbjct: 348 VVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 545 bits (1407), Expect = 0.0
Identities = 127/397 (31%), Positives = 191/397 (48%), Gaps = 32/397 (8%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
LS R+ + + + I A L G VI L GEPDF+TP I + GI +++EG T
Sbjct: 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTH 61
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT + G LELR I K++ PD I+++ G+ + A+ ++ GDEV+I P
Sbjct: 62 YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNP 121
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+ Y R A PV + LE L++K++ +I+ SPSNP G V +
Sbjct: 122 CYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSDKTKAIIINSPSNPLGEVIDR 173
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
EI ++ ++SDEIY ++Y S E+T+ +NGFSK +AMT
Sbjct: 174 ----EIYEFAYEN-IPYIISDEIYNGLVYE-GKCYSAIEFDENLEKTILINGFSKLYAMT 227
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
GWR+GY+ + A K+Q A +ISQ A + A ++ M+K F R
Sbjct: 228 GWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKE--TEREINSMIKEFDRR 285
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
R ++K + G +++ P GA+Y+F + E+ LL + VA
Sbjct: 286 RRLVLKYVKDF-GWEVNNPIGAYYVFPNIG-------------EDGREFAYKLLKEKFVA 331
Query: 427 LVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461
L PG FG IRISYA S ++ +ERIK+ L
Sbjct: 332 LTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFL 368
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 536 bits (1384), Expect = 0.0
Identities = 87/413 (21%), Positives = 156/413 (37%), Gaps = 28/413 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSV----IRLAAGEPDFD--TPVLIAEAGINAI 120
P + V + G + + + G+ D TP
Sbjct: 8 FKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQ 67
Query: 121 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGD 179
G YT G L +R + +L G D ++++ G + ++ AV A + GD
Sbjct: 68 SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGD 127
Query: 180 EVIIPAPFWVSYPEMARIADATPVILP----TRISENFLLDPKVLESKLTEKSRLLILCS 235
+V I P + + ++ + V + + LD LE +R+ + +
Sbjct: 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187
Query: 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTL 294
P+NP G VY + +IA + A++ V++D++Y + YA A++T + + E +
Sbjct: 188 PNNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVV 246
Query: 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 354
T+ G SK +++G+RLG G + +A K+Q+ + A+ SQ
Sbjct: 247 TIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFD---EAPG 303
Query: 355 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414
+ + + RD L+ EGV PQ YLF
Sbjct: 304 WMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP----------KLAVAPAE 353
Query: 415 LCRYLLDKAQVALVPGDAFGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 465
+ L +A V + PG F T +R++++ AA RI + R
Sbjct: 354 FVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 519 bits (1339), Expect = 0.0
Identities = 102/410 (24%), Positives = 182/410 (44%), Gaps = 33/410 (8%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
S RV + S + A + GV + L G+PD TP + E I +
Sbjct: 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFER-IYENKPEVVY 74
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y+ +AG ELR A K + P+ +LV+NG ++IL + + +PGDE+++ P
Sbjct: 75 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
F+ +Y A+IA + + R+ E F + P+ LES + E+++ ++L +P NPTG VY K
Sbjct: 135 FYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGK 193
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
+ + + I +H L ++ DE+Y I++ S S+ ++ + ++ SK F+
Sbjct: 194 DEMRYLVEIAERHG-LFLIVDEVYSEIVFR-GEFASALSI--ESDKVVVIDSVSKKFSAC 249
Query: 307 GWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
G R+G I + ++ K+ Q + Q V L + + +RE
Sbjct: 250 GARVGCLITRNEELISHAMKLA-QGRLAPPLLEQIGSVGLLN---LDDSFFDFVRETYRE 305
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL----- 420
R + ++K E + ++P GAFY+ + +E++E R++L
Sbjct: 306 RVETVLKKLEEHGLKRFTKPSGAFYITAELP------------VEDAEEFARWMLTDFNM 353
Query: 421 DKAQVALVPGDAFGDDT-----CIRISYAASLTTLQAAVERIKKGLLTLR 465
D + P F IRI+ L A++ + +GL
Sbjct: 354 DGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 403
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 503 bits (1298), Expect = e-178
Identities = 116/409 (28%), Positives = 200/409 (48%), Gaps = 26/409 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREG 123
S R +V+ + + A L + G+ VIRL G+P DF P + EA AI+EG
Sbjct: 12 ASKRALSVEYA-IRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG 70
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 183
Y + G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE+++
Sbjct: 71 HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILV 130
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 243
P P + Y + + PV T E++ D + K+T++++ + + +P+NPTG++
Sbjct: 131 PGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGAL 190
Query: 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303
Y K L+EI I ++ + V+SDEIY+ + Y H S SL + +NG SK +
Sbjct: 191 YDKKTLEEILNIAGEY-EIPVISDEIYDLMTYE-GEHISPGSLTKD-VPVIVMNGLSKVY 247
Query: 304 AMTGWRLGYIA--GPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358
TGWRLGY+ P++ ++ + ++ ++ +Q A +A L + + +
Sbjct: 248 FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYLKE 304
Query: 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 418
+K +ERRD++ K E+ G+ ++PQGAFY+F +N +
Sbjct: 305 YMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG---------PWKNDKEFVLD 355
Query: 419 LLDKAQVALVPGDAFGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 465
+L A V V G FG+ R + + L+ A++R +K +
Sbjct: 356 VLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKERL 404
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-171
Identities = 98/406 (24%), Positives = 168/406 (41%), Gaps = 25/406 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+ +AV P + + + A +AG +I + G+P P EA ++
Sbjct: 4 KNSSRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALG 63
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G LR I E G+ P +++++ G+ L A A+ GD V I AP
Sbjct: 64 YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+ SY ++ R PV LPT P L++ SP+NPTG++
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDH 180
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
+ + +SDEIY I Y + + + +N FSK F+MT
Sbjct: 181 AAMGALIEAAQAQ-GASFISDEIYHGIEYEAKAV----TALELTDECYVINSFSKYFSMT 235
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
GWR+G++ P+ V +I A SQ A +AAL + + ++
Sbjct: 236 GWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAAL----DCDAELQANLDVYKAN 291
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
R +++ + +++ P GAFY++ D S ++S + +L+KA VA
Sbjct: 292 RKLMLERLPKAGFTRIAPPDGAFYVYADVSDL----------TDDSRAFAAEILEKAGVA 341
Query: 427 LVPGDAFGDDT---CIRISYAASLTTLQAAVERIKKGLLTLRPGVP 469
+ PG F + +R SYA + ++ ++R++ + G
Sbjct: 342 VTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEGHH 387
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-171
Identities = 69/437 (15%), Positives = 123/437 (28%), Gaps = 48/437 (10%)
Query: 59 EEVQVDVSLSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGI 117
E++ + + + + + T L +A G R+ G P P + E I
Sbjct: 8 EKLIREKQNELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEI 67
Query: 118 NAIREGFT-RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176
+REG Y G EL+ K + + + G+ Q + L
Sbjct: 68 QKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR 127
Query: 177 ----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232
+ P + RI L K+ T + +I
Sbjct: 128 THKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSII 187
Query: 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTSFASLP 287
+P+NPT L I + KH ++V+ D Y + + P S+
Sbjct: 188 YSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVA 246
Query: 288 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV------------------AACNKIQSQ 329
+ + SKAF+ G R+G + A +
Sbjct: 247 NYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA 306
Query: 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-----EGVKMSE 384
+SGA+ +Q A L G V + + + K F + +E
Sbjct: 307 LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNE 366
Query: 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT--CIRIS 442
P + F Y G +S L + A+ +
Sbjct: 367 PLADGFYF--TVGYKG---------MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICT 415
Query: 443 YAASLTTLQAAVERIKK 459
+ +R++
Sbjct: 416 SLLPESQFPDLEKRLQM 432
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 479 bits (1235), Expect = e-168
Identities = 90/414 (21%), Positives = 170/414 (41%), Gaps = 47/414 (11%)
Query: 67 LSPRVNAV--KPSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE 122
++ + + S + + A +V + G P P ++ + + +
Sbjct: 4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTD 63
Query: 123 ----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 178
YT G +E R+AI L +G + D + ++ GA S+ A+ S
Sbjct: 64 YDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDA 123
Query: 179 -DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237
DE I AP++ Y A A V +P E+F +D LE ++ +R +I+ SP+
Sbjct: 124 YDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQIDFDALEERINAHTRGVIINSPN 182
Query: 238 NPTGSVYPKNLLDEIARIVAKHPR-----LLVLSDEIYEHIIYAPATHTSFASLPGMWER 292
NP+G+VY + + +++ ++ K + + +++DE Y I+Y + ++
Sbjct: 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY---DGIKVPFVTKYYDN 239
Query: 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAA 345
TL +SK+ ++ G R+GY+ P ++ A S+ QK V
Sbjct: 240 TLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKC 299
Query: 346 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405
G + + A++E RD L + + G +P GAFY+F+
Sbjct: 300 QG--------ATGDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKAL--------- 341
Query: 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
++S + C + V +V D FG +RISY ++ ++ +K
Sbjct: 342 ---EDDSNAFCEKAK-EEDVLIVAADGFGCPGWVRISYCVDREMIKHSMPAFEK 391
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 472 bits (1216), Expect = e-166
Identities = 77/374 (20%), Positives = 142/374 (37%), Gaps = 26/374 (6%)
Query: 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 151
AGVS+ L E F E ++ Y G+ + ++
Sbjct: 25 AGVSISSLTLEE-LFALSGTNPEDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----G 78
Query: 152 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 211
P+QIL +NGA + L + ++ PGD VI P + ++ + A +
Sbjct: 79 VKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEN 138
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271
+L D + L + ++++ + + +NPTG+V + L+E+ I ++ +LSDE+Y
Sbjct: 139 GWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYR 197
Query: 272 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331
+ S+ ++++ + VN SK +++ G R+G++A +
Sbjct: 198 SF-----SELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTM 252
Query: 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391
A AL E++ + E L + E V P
Sbjct: 253 ICAGVFDDLVAQLALA---HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTS 309
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQ 451
F+ + E C LL + V LVPG+ F D +R+ +A TL
Sbjct: 310 FVKIAV-----------DMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLI 358
Query: 452 AAVERIKKGLLTLR 465
+E++ + L
Sbjct: 359 KGLEKLSQFLRRFD 372
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-160
Identities = 96/433 (22%), Positives = 174/433 (40%), Gaps = 25/433 (5%)
Query: 38 LHNFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVI 97
+H+ + ++ L V S + + AI D ++I
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMWSVRPS---DMAKKTFNPIRAIVDNMKVKPNPNKTMI 57
Query: 98 RLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSY 152
L+ G+P + T + +A +A+ G + Y P+ G L R I
Sbjct: 58 SLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPE-APL 116
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212
+++++G Q+I + + +PG +++P P + Y +A + ++
Sbjct: 117 EAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKS 176
Query: 213 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272
+ +D K LE + EK+ LI+ +PSNP GSV+ K L +I + A+ + +L+DEIY
Sbjct: 177 WEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQ-CVPILADEIYGD 235
Query: 273 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----- 327
++++ + A+L L+ G +K + + GWRLG+I N+I+
Sbjct: 236 MVFSDCKYEPLATL-STDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK 294
Query: 328 -SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386
SQ G +I Q A + L GE + + D + + G++ P
Sbjct: 295 LSQRILGPCTIVQGALKSILCRT--PGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS 352
Query: 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAAS 446
GA YL + E F + EN L+ + V +P F IR+
Sbjct: 353 GAMYLMVGIEM------EHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVP 406
Query: 447 LTTLQAAVERIKK 459
+ A RI++
Sbjct: 407 EVMMLEACSRIQE 419
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 455 bits (1173), Expect = e-159
Identities = 102/416 (24%), Positives = 175/416 (42%), Gaps = 32/416 (7%)
Query: 64 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
DVS+S V + ++D A +I+L+ G+P D +L + A I ++E
Sbjct: 5 DVSMSNHAGLV-FNPIRTVSDNAKPSPS-PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 62
Query: 124 -----FTRYTPNAGTLELRSAICHKL------KEENGLSYTPDQILVSNGAKQSILQAVL 172
Y P G+ E R A+ KEE + D +++ +G IL A+
Sbjct: 63 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 122
Query: 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232
A+C GD ++P P + Y + + R ++ D + +K++LLI
Sbjct: 123 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 182
Query: 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY----APATHTSFASLPG 288
+ +PSNP GS + + +++I R+ + RL + SDEIY +++ AT TS A
Sbjct: 183 VTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFET 241
Query: 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGV 343
+ + G +K + GWRLG++ + ++ G ++ Q A
Sbjct: 242 TV-PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALG 300
Query: 344 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 403
AL E + ++V E +L GE G+ + P+GA YL
Sbjct: 301 EALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDL------ 352
Query: 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
E + I+ LL++ V ++PG F R++ + + AVERIK
Sbjct: 353 EKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKA 408
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 421 bits (1085), Expect = e-145
Identities = 94/443 (21%), Positives = 180/443 (40%), Gaps = 26/443 (5%)
Query: 40 NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRL 99
+ R+ +M+ S + V S V A A G +I L
Sbjct: 3 HMKQRFIRQFTNLMSTSRPKVVANKYFTSNTAKDVWSLTNEAAAKAANNSKNQGRELINL 62
Query: 100 AAGEPDFDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158
G + P + A+ +Y+P G L +++ + +
Sbjct: 63 GQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVT 122
Query: 159 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR---------- 208
V+ GA + IL ++ + + GDEVI+ PF+ Y + V +P
Sbjct: 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNT 182
Query: 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268
E + +D + E +T K++ +I+ +P NP G V+ + L + I KH ++++SDE
Sbjct: 183 RGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDE 241
Query: 269 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQ 327
+YEH+ + + P + + TLTV K+FA TGWR+G+ ++ ++ K
Sbjct: 242 VYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAH 301
Query: 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387
++ + S Q+A ++ KM + + + F EL G+ + P+G
Sbjct: 302 TRICFASPSPLQEACANSINDA-LKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEG 359
Query: 388 AFYLFIDFSTYYGSEAEGFGKIENSES----LCRYLLDKAQVALVPGDAF-------GDD 436
+++ +DFS E + + ++ + +L+++ V +P F +
Sbjct: 360 TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAE 419
Query: 437 TCIRISYAASLTTLQAAVERIKK 459
+R + L+ AVER+K
Sbjct: 420 NLLRFAVCKDDAYLENAVERLKL 442
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 407 bits (1047), Expect = e-140
Identities = 124/416 (29%), Positives = 192/416 (46%), Gaps = 31/416 (7%)
Query: 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT 128
V+ ++P T + +ALA + + L G PD D P + +A +AI G +Y
Sbjct: 2 ATVSRLRPYATTVFAE-MSALATR-IGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYP 59
Query: 129 PNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187
P G+ LR AI + + G+ Y P+ ++LV+ GA ++I AVL + PG EV++ PF
Sbjct: 60 PGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPF 119
Query: 188 WVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
+ SY + +A A V +P F LD L +T ++R LI+ SP NPTG+V
Sbjct: 120 YDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSA 179
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
L IA I L+V++DE+YEH+++ A H A GM ERT+T++ +K F T
Sbjct: 180 TELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCT 238
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
GW++G+ GP +A + + + Q A AL V+ + + R R
Sbjct: 239 GWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRAR 295
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
RD L E+ G + + G ++L D G ++S C L +K VA
Sbjct: 296 RDRLAAGLTEI-GFAVHDSYGTYFLCADPR--------PLG-YDDSTEFCAALPEKVGVA 345
Query: 427 LVPGDAFGDD-------------TCIRISYAASLTTLQAAVERIKKGLLTLRPGVP 469
+P AF D +R ++ TL A+ R+ GVP
Sbjct: 346 AIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPATGVP 401
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 404 bits (1041), Expect = e-139
Identities = 113/402 (28%), Positives = 193/402 (48%), Gaps = 26/402 (6%)
Query: 66 SLSPRVNAVK--PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
+ +P + K T T +ALAQ I L+ G PDFD P + E + + +G
Sbjct: 2 TNNPLIPQSKLPQLGTTIFTQ-MSALAQQ-HQAINLSQGFPDFDGPRYLQERLAHHVAQG 59
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVI 182
+Y P G LR AI K + G D I V+ GA +++ A+ A+ GDEVI
Sbjct: 60 ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVI 119
Query: 183 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242
P + SY ++ + + +F +D + + L+E++RL+IL +P NP+ +
Sbjct: 120 CFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLSERTRLVILNTPHNPSAT 178
Query: 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302
V+ + + + +A H + V+SDE+YEHI ++ H S + P + ER + V+ F K
Sbjct: 179 VWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT 237
Query: 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVK 361
+ MTGW++GY P A K+ Q+ + ++ +Q A L A E +
Sbjct: 238 YHMTGWKVGYCVAPAPISAEIRKVH-QYLTFSVNTPAQLALADMLR---AEPEHYLALPD 293
Query: 362 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 421
+R++RD LV + E +++ +G ++L +D+S + C++L
Sbjct: 294 FYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAV---------STLDDVEFCQWLTQ 343
Query: 422 KAQVALVPGDAFGDDTC----IRISYAASLTTLQAAVERIKK 459
+ VA +P F D IR+ +A +TL AA ER+++
Sbjct: 344 EHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 408 bits (1049), Expect = e-138
Identities = 76/423 (17%), Positives = 138/423 (32%), Gaps = 65/423 (15%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK-LKEENGLSYTP 154
+ + D + E + Y L + I + + E G P
Sbjct: 106 SLSYVRDQLGLDPAAFLHEMVDGILGCN---YPVPPRMLNISEKIVRQYIIREMGADAIP 162
Query: 155 DQ---ILVSNGAKQSILQ-----AVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVI 204
+ + G ++ + + GD+V I P + Y E+ +A V
Sbjct: 163 SESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVA 222
Query: 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLL 263
+ S N+ L+ ++ +PSNP + L+ + IVA+H P L+
Sbjct: 223 INADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLM 282
Query: 264 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 323
+L+D++Y S ++ E TL V FSK F TGWRLG +A + V
Sbjct: 283 ILTDDVYGTFAD---DFQSLFAI--CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDL 337
Query: 324 NKIQSQFTSGASSISQKAGVA--------------------------------------A 345
+ Q + + + + +
Sbjct: 338 ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS 397
Query: 346 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGS 401
L + +K RR+ + + ++ E +Y ID YG
Sbjct: 398 LFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLR-DENAVDYYTLIDLQDVTAKLYGE 456
Query: 402 EAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTC-IRISYAASLTTLQAAVERIKK 459
+ K ++ + + D+ + L+PG FG + R S A AA+ R +
Sbjct: 457 AFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALR 516
Query: 460 GLL 462
+
Sbjct: 517 KMA 519
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 402 bits (1035), Expect = e-136
Identities = 85/461 (18%), Positives = 155/461 (33%), Gaps = 72/461 (15%)
Query: 64 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
++ + ++ + + + + E + ++AE A+
Sbjct: 73 IMAGYINTDGIRERLFAFLDPDKNDEDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANN 132
Query: 124 FTRYTPNAGTLELRSAICHKLKEE---NGLSYTPDQILVSNGAKQSILQAVLAVCS---- 176
+ P+ + I + L+E + + + G +I+ A ++
Sbjct: 133 Y--PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190
Query: 177 -PGDEVIIPAPFWVSYPEMARIADATPVI--LPTRISENFLLDPKVLESKLTEKSRLLIL 233
GD++ I P + Y + + D V L + ++ ++P +E + LI+
Sbjct: 191 KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIV 250
Query: 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 293
+P+NPT + N L+ I + V K+P+L+++SDE+Y + S S+ + T
Sbjct: 251 VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSV--VPYNT 305
Query: 294 LTVNGFSKAFAMTGWRLGYIAGPKHFV-------------AACNKIQSQFTSGASSISQK 340
+ V +SK F TGWRLG IA + V +K S +
Sbjct: 306 MLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFI 365
Query: 341 AGVAA-------------------------------LGLGYAGGEVVSKMVKAFRERRDF 369
+ A G + + K ER D
Sbjct: 366 DRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQ 425
Query: 370 LVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGSE-AEGFGKIENSESLCRYLLDKAQ 424
L + + ++ +Y ID YG E + L +K
Sbjct: 426 LHDAMQ-APKDE-TDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNG 483
Query: 425 VALVPGDAFG-DDTCIRISYAASLTTLQAAVERIKKGLLTL 464
V LV G FG +R+S A T I K +L L
Sbjct: 484 VVLVDGVGFGAKPGELRVSQANLPTE---DYALIGKQVLEL 521
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-133
Identities = 110/409 (26%), Positives = 186/409 (45%), Gaps = 39/409 (9%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
L PR A K S I + + LAQ + + L G P P + EA A+
Sbjct: 2 RLHPRTEAAKES----IFPRMSGLAQR-LGAVNLGQGFPSNPPPPFLLEAVRRAL-GRQD 55
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
+Y P AG LR A+ + + P+ ++V++GA +++ + ++ PGDEV++
Sbjct: 56 QYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLE 109
Query: 186 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
PF+ Y A +A A ++ ++ F LD LE LT ++R L+L +P NPTG V+
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVF 169
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
+ L+ IAR+ H L ++SDE+Y+ + Y ERT TV K
Sbjct: 170 GERELEAIARLARAH-DLFLISDEVYDELYYGERPRRL---REFAPERTFTVGSAGKRLE 225
Query: 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364
TG+R+G+I GPK F+ ++ + A + Q AL L + + +R
Sbjct: 226 ATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLA-RREGFYEALREGYR 284
Query: 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
RRD L + G+++ P+G ++L + G+ L+++A+
Sbjct: 285 RRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--------GWD--------AFRLVEEAR 327
Query: 425 VALVPGDAFGDDTC----IRISYAASLTTLQAAVERIKKGLLTLRPGVP 469
VAL+P AF + R ++ + L A+ER+ + + + R
Sbjct: 328 VALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPREAEG 376
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-131
Identities = 118/414 (28%), Positives = 188/414 (45%), Gaps = 29/414 (7%)
Query: 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA-IREGFTR 126
+ R+ + + V T A A SV+ L G PD P + E A + +
Sbjct: 2 AKRIEGLDSNVWVEFTKLA-----ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ 56
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
YT G L A+ + P+ +ILV+ GA S+ ++ + PGDEVII
Sbjct: 57 YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMV 116
Query: 186 PFWVSYPEMARIADATPVILPTR---------ISENFLLDPKVLESKLTEKSRLLILCSP 236
PF+ Y M R+A A PV +P R S ++ DP+ LESK + K++ +IL +P
Sbjct: 117 PFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTP 176
Query: 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 296
NP G VY + L IA + KH L +SDE+YE ++Y TH A+LPGMWERT+T+
Sbjct: 177 HNPLGKVYTRQELQVIADLCVKHD-TLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235
Query: 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV- 355
K F++TGW+LG+ GP H + +Q ++ Q A A + +
Sbjct: 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP 295
Query: 356 ---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412
+ + K +RD +V+ + G+K P G +++ D S+ ++
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYD 354
Query: 413 ESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLTTLQAAVERIKK 459
+++ ++ +P AF D +R + +TL AA E +
Sbjct: 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 377 bits (970), Expect = e-128
Identities = 101/396 (25%), Positives = 178/396 (44%), Gaps = 17/396 (4%)
Query: 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R 126
R++ + P + A + G +I L+ G PD TP I E + T
Sbjct: 11 FARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHG 70
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
Y+ + G LR AI H ++ + P+ + +V+ G+K+ + +LA GD +++P
Sbjct: 71 YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPN 130
Query: 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245
P + + A IA A +P +F + + + K R++IL PSNPT
Sbjct: 131 PSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVE 190
Query: 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
+ + + + ++ ++V+ D Y I+Y S +PG + + SK++ M
Sbjct: 191 LDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNM 249
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
GWR+G++ G V+A +I+S G + Q A +AAL + V + + +++
Sbjct: 250 AGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQ 306
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD LVK E G + P+ + Y++ E + + S + LL A+V
Sbjct: 307 RRDVLVKGLREA-GWMVENPKASMYVWAKIP-------EPYAHL-GSLEFAKKLLQDAKV 357
Query: 426 ALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
++ PG FGD D +R + + L+ AV IK
Sbjct: 358 SVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKA 393
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 378 bits (972), Expect = e-128
Identities = 73/396 (18%), Positives = 146/396 (36%), Gaps = 40/396 (10%)
Query: 96 VIRLAAGEP----DFDTP-------VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144
+I++ E D + +I + G + A+ +
Sbjct: 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 99
Query: 145 KE--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA-DAT 201
E N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 100 AEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVE 159
Query: 202 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARI 255
V + S F + LE E + + +++ +PSNP G+ +N L +
Sbjct: 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219
Query: 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASL---------PGMWERTLTVNGFSKAFAMT 306
V + ++SDEIY ++ + S + +W+R V SK +
Sbjct: 220 VEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP 278
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
G+R+G I V A S F SS +Q A L +++ K ++R
Sbjct: 279 GFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR 337
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
+ LV + G+ + ++D S E L + ++ + +
Sbjct: 338 QKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLN 391
Query: 427 LVPGDAFGDDT--CIRISYAASL-TTLQAAVERIKK 459
+ PG + R+ +A TL A++R+K
Sbjct: 392 ISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA 427
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 375 bits (966), Expect = e-127
Identities = 111/420 (26%), Positives = 186/420 (44%), Gaps = 35/420 (8%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+ R++ + + + LA V+ L G PDF P EA +A+ F
Sbjct: 6 QARRLDGIDYN----PWVEFVKLASE-HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFML 60
Query: 127 --YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 183
YT G L + E G P +LV+ G ++ A A+ GDEVII
Sbjct: 61 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 120
Query: 184 PAPFWVSYPEMARIADATPVILPTR----------ISENFLLDPKVLESKLTEKSRLLIL 233
PF+ Y M +A PV + + S N+ LDP L K T +++ L+L
Sbjct: 121 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 180
Query: 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 293
+P+NP G V+ + L+ +A + +H ++ ++DE+Y+ ++Y H S ASLPGMWERT
Sbjct: 181 NTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 239
Query: 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYA- 351
LT+ K F+ TGW++G++ GP H + + Q + + SQ A +
Sbjct: 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVH-QNSVFHCPTQSQAAVAESFEREQLL 298
Query: 352 ---GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408
+ +A + RD +++S + G+K PQG+++L D S + + G
Sbjct: 299 FRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGA 357
Query: 409 I--ENSESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLTTLQAAVERIKK 459
+ ++++ + +P F IR + TLQA E+++K
Sbjct: 358 VDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 417
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 374 bits (963), Expect = e-127
Identities = 100/431 (23%), Positives = 180/431 (41%), Gaps = 31/431 (7%)
Query: 53 MACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI 112
M+ + E + L R S + + LA + L G PD+ P
Sbjct: 1 MSSTSNETMHNKFDLPKRYQGSTKS----VWVEYIQLAAQ-YKPLNLGQGFPDYHAPKYA 55
Query: 113 AEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSIL 168
A A +YT G L A+ + + P ++LV+ GA +++
Sbjct: 56 LNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115
Query: 169 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--------TRISENFLLDPKVL 220
+ GDEVII PF+ Y M + A P +P T S +++LD L
Sbjct: 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNEL 175
Query: 221 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280
E+ EK++++I+ +P NP G V + L+ +A + K +L +SDE+YEH+++ P H
Sbjct: 176 EALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEH 234
Query: 281 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQK 340
+LPGMWERT+T+ K F++TGW++G+ GP+ + + ++ Q+
Sbjct: 235 IRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQE 294
Query: 341 AGVAALGLGY----AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396
A + + + +RD++ E+ G+ + PQG +++ D+S
Sbjct: 295 AIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWS 353
Query: 397 TY-YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-------TCIRISYAASLT 448
+ + +++ + +P AF + +R +
Sbjct: 354 SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDE 413
Query: 449 TLQAAVERIKK 459
LQ A E ++K
Sbjct: 414 NLQKAAEILRK 424
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 373 bits (960), Expect = e-126
Identities = 72/400 (18%), Positives = 147/400 (36%), Gaps = 39/400 (9%)
Query: 96 VIRLAAGEP----DFDTPVLIAEAGINAIREG------FTRYTPNAGTLELRSAICHKLK 145
VI++ E D + + EG + G E R AI ++
Sbjct: 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFME 97
Query: 146 EENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD-ATP 202
+ G + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 98 KTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQL 157
Query: 203 VILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIV 256
+ + S NF + K ++ K + LIL +PSNP G+ K+ L +
Sbjct: 158 IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFT 217
Query: 257 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTGWR 309
+H + ++ DEIY ++ S A + + V SK + G+R
Sbjct: 218 NQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 310 LGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 368
+G I V K+ S + A A L + + +R
Sbjct: 277 VGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLA--AMLSDEKFVDNFLRESAMRLGKRHK 334
Query: 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 428
+ G+K + + ++D ++ SL R +++ ++ +
Sbjct: 335 HFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIINDVKLNVS 388
Query: 429 PGDAFGDDT--CIRISYAASL-TTLQAAVERIKKGLLTLR 465
PG +F R+ +A T+ A+ RI++ + +
Sbjct: 389 PGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-124
Identities = 86/397 (21%), Positives = 165/397 (41%), Gaps = 24/397 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT- 125
+S ++ + S + + + +I +A G PD TP I + A+
Sbjct: 22 ISNKLANIPDSYFGKTMGRK--IEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQ 79
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 184
+Y G + AI + + ++ + ++ + G K ++ V +PGD V++P
Sbjct: 80 KYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLP 139
Query: 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P + Y +AD PV L ++L D ++S++ +K++L+ L P+NPTGS
Sbjct: 140 DPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTA 198
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
K + DE ++ D Y + A + S + + + + SK +
Sbjct: 199 TKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFD-AKNPSILASENGKDVAIEIYSLSKGYN 256
Query: 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364
M+G+R+G+ G K + A K Q+ +G Q A + AL + + + F+
Sbjct: 257 MSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNH---YDDFLEEQSNVFK 313
Query: 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
RRD + + +G Y++++ Y SE ++L+ +
Sbjct: 314 TRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGYD-----------SEQFEQFLVQEKS 361
Query: 425 VALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKK 459
+ + PG FG+ + +RIS A L A R+ +
Sbjct: 362 ILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTE 398
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-117
Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 25/378 (6%)
Query: 88 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKE 146
+ GV +I L+ G D P +A A+ + T Y + TL +
Sbjct: 19 KARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEG 78
Query: 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 205
G+ P + L G+++ + +LA+ P D +++P + SY AR+A ++
Sbjct: 79 RYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLI 138
Query: 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265
P R E+ L D K + + ++++L+L P+NPTG+V +E + KH L ++
Sbjct: 139 PLR--EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLI 195
Query: 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325
D Y +Y S +LPG ER + + SK++ + G+RLG+ G + +A +
Sbjct: 196 HDNPYVDQVYE-GEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLER 254
Query: 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385
++ + + GV AL EVV + +RER + ++ + + P
Sbjct: 255 VKGVIDFNQYAGVLRMGVEALKTPK---EVVRGYARVYRERALGMAEALK--GVLSLLPP 309
Query: 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISY 443
+ YL+ L+++ VAL PG FG +RI+
Sbjct: 310 RATMYLWGRLPEGVD-----------DLEFGLRLVERG-VALAPGRGFGPGGKGFVRIAL 357
Query: 444 AASLTTLQAAVERIKKGL 461
L L A +RI++ L
Sbjct: 358 VRPLEELLEAAKRIREAL 375
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 332 bits (852), Expect = e-110
Identities = 67/428 (15%), Positives = 149/428 (34%), Gaps = 51/428 (11%)
Query: 67 LSPRVNAVK-PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI---AEAGINAI-R 121
LS + P ++ + A+A + G + +A N +
Sbjct: 25 LSDLGQNMFYPKGILSQS------AEAKSTTYNATIGMATNKDGKMFASSLDAMFNDLTP 78
Query: 122 EGFTRYTPNAGTLELRSAICHKLKEEN-GLSYTP-DQILVSNGAKQSILQAVLAVCSPGD 179
+ Y P G ELR K+ +N LS + +V+N + + D
Sbjct: 79 DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDD 138
Query: 180 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSP 236
+++P W +Y + + + ++ L L ++IL P
Sbjct: 139 TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYP 198
Query: 237 SNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIY----APATHTSFASLPG 288
+NPTG + I + K +++ + D+ Y + Y + T+ +L
Sbjct: 199 NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHS 258
Query: 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-------TSGASSISQKA 341
+ ++G +K F G+R+G++ ++++ S +Q A
Sbjct: 259 NAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSA 318
Query: 342 GVAALGLGYAGGEVVSKMVKAFRERRDF---LVKSFGELEGVKMSEPQGAFYLFIDFSTY 398
L + + + ++ +ER + +V + + + +++ I
Sbjct: 319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHD- 377
Query: 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERI 457
+ E+L ++L+DK + ++ +A IRI+++ + + I
Sbjct: 378 -----------VDPEALRKHLIDKYSIGVIALNATD----IRIAFSCVEKDDIPHVFDSI 422
Query: 458 KKGLLTLR 465
K + LR
Sbjct: 423 AKAIDDLR 430
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-109
Identities = 97/389 (24%), Positives = 153/389 (39%), Gaps = 42/389 (10%)
Query: 89 LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHK 143
L +VI L+ G+ +AEA ++I Y P+ G LR +
Sbjct: 28 LENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSED 87
Query: 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 203
+I +S+GAK + +L+ P V I P + +Y ++AR+ A +
Sbjct: 88 FYRGF---VDAKEIFISDGAKVDLF-RLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEI 143
Query: 204 I-LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262
I LP F + +L LCSP+NPTG+V K+ L I +H +
Sbjct: 144 IALPCLQENAFFPEFPE-----DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EI 197
Query: 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322
L+L D Y I P+ S +P + +N FSK G RLG+ P+ A
Sbjct: 198 LILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYA 257
Query: 323 C--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374
+ S +GAS +Q+AGVA L + + +RE D L K+
Sbjct: 258 DGHFVIQDWERFLSTTFNGASIPAQEAGVAGL-----SILPQLEAIHYYRENSDLLRKAL 312
Query: 375 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 434
G ++ + A YL++ + S L + L + +A+ PG FG
Sbjct: 313 LAT-GFEVFGGEHAPYLWVKPTQANIS----------DRDLFDFFLREYHIAITPGIGFG 361
Query: 435 D--DTCIRISYAASLTTLQAAVERIKKGL 461
+R S + AA ER++
Sbjct: 362 RSGSGFVRFSSLGKREDILAACERLQMAP 390
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 319 bits (821), Expect = e-105
Identities = 93/432 (21%), Positives = 161/432 (37%), Gaps = 59/432 (13%)
Query: 60 EVQVDVSLSPRVNAVKPS---KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAG 116
E + VS + ++ ++ +A A L VI L G+ P +I A
Sbjct: 19 EYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAM 78
Query: 117 INAIRE-----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI--LQ 169
E G++ Y G LR+AI G+ D + VS+GAK I LQ
Sbjct: 79 AKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGD--DDVFVSDGAKCDISRLQ 136
Query: 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIA------------DATPVILPTRISENFLLDP 217
+ + + P + +Y + + I + F D
Sbjct: 137 VMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDL 193
Query: 218 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 277
++ ++ CSP+NPTG+ + L ++ K+ +++ D Y +
Sbjct: 194 ST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVYDSAYAMYMSDD 247
Query: 278 ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC--------NKIQSQ 329
S +PG E + FS TG RLG+ PK + + N+I
Sbjct: 248 -NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICT 306
Query: 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 389
+GAS+ISQ +A L G E + K++ ++E + ++ +F L G + + A
Sbjct: 307 CFNGASNISQAGALACLTP--EGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAP 363
Query: 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASL 447
Y+++ F S + +L+K V PG FG + +R+S
Sbjct: 364 YVWVHFPNQS------------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHR 411
Query: 448 TTLQAAVERIKK 459
+ A R K+
Sbjct: 412 ENILEACRRFKQ 423
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 320 bits (821), Expect = e-105
Identities = 80/413 (19%), Positives = 144/413 (34%), Gaps = 34/413 (8%)
Query: 78 KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT--RYTPNAGTLE 135
+ V + AL +++ + F + I A+ G Y+ + G
Sbjct: 80 QPVTFFREVLALCDHP-DLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHG 138
Query: 136 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPEM 194
LR AI + +G D I +++GA + + + D +++P P + Y
Sbjct: 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS 198
Query: 195 ARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 248
+ V S + L+ ++ +L + R L++ +P NPTG V +
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEEN 258
Query: 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASL---PGMWERTL---TVNGFSK 301
+I + L++L+DE+Y+ IY SF + G E L + SK
Sbjct: 259 QYDIVKFCKNE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSK 317
Query: 302 A-FAMTGWRLGYIAGPKHFVAACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGE---- 354
+ G R GY +I + ++ Q + A E
Sbjct: 318 GYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYAS 377
Query: 355 ---VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKI 409
++ + R L +F +LEG+ +E +GA Y+F I A+
Sbjct: 378 YKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAAN-K 436
Query: 410 ENSESLCRYLLDKAQVALVPGDAFGDDTC---IRISYAASLTTLQAAVERIKK 459
LL+ + +VPG FG R + + A + R
Sbjct: 437 APDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTV 489
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 313 bits (802), Expect = e-103
Identities = 57/397 (14%), Positives = 118/397 (29%), Gaps = 53/397 (13%)
Query: 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTL----ELRSAICHKLKEE 147
+A+G+ F +A+ Y N + EL I +
Sbjct: 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 148 NGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMARIAD 199
+ I+ G Q I V+++ P +V+ APF+ + E + D
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
+ + + + + ++ SP+NP G + H
Sbjct: 177 KKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLR--------------H 214
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 318
++ IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 215 A-VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269
Query: 319 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFL 370
++ T G +Q + L A ++ + K RER +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329
Query: 371 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVP 429
+ + E + Y S + + K E + C ++
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN 389
Query: 430 GDAFG-DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465
G F +R+S + + +K + R
Sbjct: 390 GVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKR 426
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-100
Identities = 75/396 (18%), Positives = 142/396 (35%), Gaps = 41/396 (10%)
Query: 101 AGEPDFDTPVLIAEAGI--NAIREGFTRYTPNAGTLELRSAICHKLKE-ENGLSYTPDQI 157
P F I Y+ + G +R + + + G+ PD I
Sbjct: 97 LDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNI 156
Query: 158 LVSNGAKQSILQAVLAVCSPGDE----VIIPAPFWVSYPEMARIADATPVILPTRISENF 213
++ GA I + + S G + V+IP P + Y + DA V +
Sbjct: 157 YLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCW 216
Query: 214 LLDPKVLESKLTEKS-----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268
L+ L + E ++L + +P NPTG V + ++++ + +L +L+DE
Sbjct: 217 ALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE-KLFLLADE 275
Query: 269 IYEHIIYAP-ATHTSFASL-----PGMWERTLTV--NGFSKAF-AMTGWRLGYIA---GP 316
+Y+ +Y+P SF + P + SK + G+R GY+
Sbjct: 276 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH 335
Query: 317 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE--------VVSKMVKAFRERRD 368
K+ S +S +A + + GE ++ ++
Sbjct: 336 PEIKGQLVKLLSVRLC--PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAK 393
Query: 369 FLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
F ++ G+ + QGA Y F I A+ + C LL++ +
Sbjct: 394 LTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ-MAPDMFYCMKLLEETGIC 452
Query: 427 LVPGDAFG---DDTCIRISYAASLTTLQAAVERIKK 459
+VPG FG R++ + L+ ++++K
Sbjct: 453 VVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKD 488
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 297 bits (763), Expect = 1e-96
Identities = 96/460 (20%), Positives = 171/460 (37%), Gaps = 52/460 (11%)
Query: 30 SVSFPSRYLHNFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATAL 89
++ S + RR+ V+ +DV + ++ +
Sbjct: 2 QLNVRSTASGARSSTRSRRMTAVVQAVAQRAGTIDVQRNENFGKLRAGYLFPEIARRRKA 61
Query: 90 AQA---GVSVIRLAAGEPDFDTPVLIAEAGINAI-----REGFTRYTPNAGTLELRSAIC 141
Q +I L G+ P IA+A A REG++ Y G LR A+
Sbjct: 62 HQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVA 121
Query: 142 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 201
G + D+I +S+G+K I + + V + P + Y + + + T
Sbjct: 122 STFYGHAGRA--ADEIFISDGSKCDIA-RIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMT 178
Query: 202 P----------VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251
+ +F D +++ ++ CSP+NPTG+ + L E
Sbjct: 179 GDHNGTGFDGIEYMVCNPDNHFFPDLSK-----AKRTDIIFFCSPNNPTGAAATRAQLTE 233
Query: 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311
+ K+ +++ D Y I P + +PG E + FSK TG RLG
Sbjct: 234 LVNFARKN-GSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLG 292
Query: 312 YIAGPKHFVAAC--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363
+ PK A N++ + +GAS+I Q G+A L G + ++ M+K +
Sbjct: 293 WTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP--EGLKEMNAMIKFY 350
Query: 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423
+E L +F E+ G + A Y+++ F S + +L++
Sbjct: 351 KENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPGKP------------SWDVFAEILERC 397
Query: 424 QVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461
+ PG +G + +R S S + AV R K+
Sbjct: 398 NIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAY 437
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 7e-91
Identities = 61/441 (13%), Positives = 131/441 (29%), Gaps = 70/441 (15%)
Query: 75 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--------------IAEAGINAI 120
+P+ + D ++ V L G P V ++
Sbjct: 13 QPTGISQLMDDLGDALKSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSA 72
Query: 121 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----- 175
Y+ G A+ + T + I ++NG++ +
Sbjct: 73 IISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVN 132
Query: 176 ----------SPGDEVIIPAPFWVSYPEMARIADA----TPVILPTRISEN-----FLLD 216
++ P ++ Y ++ P I + +D
Sbjct: 133 EHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVD 192
Query: 217 PKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273
+ LE+ + + P+NPTG+V + +A I ++ + ++ D Y
Sbjct: 193 FEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLIIDNAYGMP 251
Query: 274 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333
+ T+ SK + G R G I + A + + +
Sbjct: 252 FPNIIYS---DAHLNWDNNTILCFSLSK-IGLPGMRTGIIVADAKVIEAVSAMNAVVNLA 307
Query: 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFY 390
+ + +++ ++++ VK + + + +P+GA +
Sbjct: 308 PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIF 367
Query: 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT----------CIR 440
L++ F ++ L L K +VP + F CIR
Sbjct: 368 LWLWFK----------DLPISTLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIR 416
Query: 441 ISYAASLTTLQAAVERIKKGL 461
+S AA TL ++ I + +
Sbjct: 417 MSIAADEQTLIDGIKVIGEVV 437
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 1e-87
Identities = 61/394 (15%), Positives = 124/394 (31%), Gaps = 44/394 (11%)
Query: 96 VIRLAAGEPDFDTPVL--IAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEEN 148
I L G P + + + G Y G L +A+ L+E
Sbjct: 33 AIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETL 92
Query: 149 GLSYTPDQILVSNGAKQSI---LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 205
G P I ++NG++ + + G + P Y A + +
Sbjct: 93 GWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFV 152
Query: 206 PTRI------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
R F + E++ ++ + P+NPTG+V L ++ R+ +H
Sbjct: 153 SARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH 212
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319
+ ++ D Y F+ +W + + + G R G I
Sbjct: 213 -NIPLVIDNAYGVPFP----GIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKT 267
Query: 320 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 377
+ A + + + + + + + +R +
Sbjct: 268 ITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLS 327
Query: 378 -EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 436
E + +P+GA +L++ F +E L + L V +VPG F
Sbjct: 328 EERCLIHKPEGAIFLWLWFK----------DLPITTELLYQRLK-ARGVLMVPGHYFFPG 376
Query: 437 T---------CIRISYAASLTTLQAAVERIKKGL 461
C+R++Y ++A V+ + + +
Sbjct: 377 LDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEI 410
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 255 bits (654), Expect = 2e-81
Identities = 73/390 (18%), Positives = 136/390 (34%), Gaps = 40/390 (10%)
Query: 81 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 140
+ L GEP F+TP I +A N Y +A LR+A
Sbjct: 10 ERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQ 68
Query: 141 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA 198
K + ++++ + G+++ + V + P PF+ Y A+
Sbjct: 69 RGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI 128
Query: 199 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 258
A +++P +F L K ++ L+IL SP+NPTG L ++ K
Sbjct: 129 KAKSLLMPLTKENDFTPS---LNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALK 185
Query: 259 HPRLLVLSDEIYEHIIYAPATHTSF-----ASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313
H ++++DE Y I Y S + ++ L ++ SK + G R G+I
Sbjct: 186 H-DFILINDECYSEI-YENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243
Query: 314 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373
AG + ++ +++ QKA AA + K
Sbjct: 244 AGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWL----DDRHAEFFRNIYANNLKLARKI 299
Query: 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433
F +FY+++ ++N E+ + L + +P
Sbjct: 300 FKNTLI-----YPYSFYVYL--------------PVQNGENFAKTLYQNEGIITLPALYL 340
Query: 434 GDDTC----IRISYAASLTTLQAAVERIKK 459
G + +R++ L+ +E I+
Sbjct: 341 GRNRIGADYVRLALVYDTPLLEKPLEIIET 370
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 3e-66
Identities = 92/418 (22%), Positives = 175/418 (41%), Gaps = 49/418 (11%)
Query: 66 SLSPRVNAVKP---SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE 122
++ + +KP ++ +A G+ + L GEP TP +I +A ++
Sbjct: 1 GMNTLLKQLKPYPFARLHEAMQGISA--PEGMEAVPLHIGEPKHPTPKVITDALTASL-H 57
Query: 123 GFTRYTPNAGTLELRSAICHKLKEE-NGLSYTPD-QILVSNGAKQSILQAVLAVCSP--- 177
+Y AG ELR A + LK +GL+ D +IL G+++++ V V +P
Sbjct: 58 ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSD 117
Query: 178 --GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 235
++ P PF+ Y + + +F D + + ++ ++++L+ +CS
Sbjct: 118 GIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSISEEVWKRTKLVFVCS 176
Query: 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF----ASLPGMWE 291
P+NP+GSV + E+ + K+ ++ SDE Y I + A L +
Sbjct: 177 PNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQ 235
Query: 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351
+ L SK + G R G++AG + ++ S S Q+A +AA
Sbjct: 236 KLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD---- 291
Query: 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411
+ V + ++E+ + ++ ++ VK+ P +FY+++ K+ +
Sbjct: 292 DEQHVIDNRRLYQEKFERVIPILQQVFDVKL--PDASFYIWL--------------KVPD 335
Query: 412 SESL--CRYLLDKAQVALVPGDAFGDDTC--------IRISYAASLTTLQAAVERIKK 459
+ L R L KA + ++PG DT +RI+ A + T A E I
Sbjct: 336 GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVS 393
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 7e-63
Identities = 68/411 (16%), Positives = 127/411 (30%), Gaps = 52/411 (12%)
Query: 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRY 127
V K I+++ ++ V+ L G+P + Y
Sbjct: 2 VKLENSRKPEKISNKNIPMSD---FVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSY 58
Query: 128 TPNAGTL------ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE- 180
+ L EL AI + I+V G+ Q AV A+ S
Sbjct: 59 FSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQ 118
Query: 181 ---VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237
V+ APF+ +Y E + + D + + + ++ SP+
Sbjct: 119 PVSVVAAAPFYSTYVEETTYVRSGMY--------KWEGDAWGFD---KKGPYIELVTSPN 167
Query: 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 297
NP G + + + V+ D Y Y P + + + + +
Sbjct: 168 NPDG-----TIRETVVNR-PDDDEAKVIHDFAY----YWP----HYTPITRRQDHDIMLF 213
Query: 298 GFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 356
FSK G R+G+ + K + + G S SQ L + +
Sbjct: 214 TFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSE 273
Query: 357 SKMVKAF-------RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409
S+ F + R + L + E + + + AF + + A +
Sbjct: 274 SESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGK-SLESYPAFAWLGT 332
Query: 410 ENSESLCRYLLDKAQVALVPGDAFGDDT-CIRISYAASLTTLQAAVERIKK 459
+ L L + +V G+ G D +R+S + +ER+
Sbjct: 333 KEETDLVSELR-RHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLAN 382
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 3e-54
Identities = 82/365 (22%), Positives = 150/365 (41%), Gaps = 33/365 (9%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
DF T + +A +A++ Y P+ L A + G P+ I
Sbjct: 34 DFSTCPAVLQAITDAVQREAFGYQPDGS--LLSQATAEFYADRYGYQARPEWIFPIPDVV 91
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVILPTRISENFLLDPKVLES 222
+ + A+ +VI+P P +YP + AT I I ++ +E
Sbjct: 92 RGLYIAIDHFTPAQSKVIVPTP---AYPPFFHLLSATQREGIF---IDATGGINLHDVEK 145
Query: 223 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 282
+R ++LC+P NP G V+ L+E+ + ++ VL DEI+ +++ HT
Sbjct: 146 GFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRY-DARVLVDEIHAPLVF-DGQHTV 203
Query: 283 FASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQK 340
A + +T+ SKA+ + G + I ++ GAS++
Sbjct: 204 AAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLI 263
Query: 341 AGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY 398
A AA Y G +++ V + DFL+ + + G K++ Q + ++IDF
Sbjct: 264 AAEAA----YRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDT 319
Query: 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVER 456
S + ++KA+VA+ G FG+D R+++A S L+ A++R
Sbjct: 320 -----------TIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDR 368
Query: 457 IKKGL 461
+ K +
Sbjct: 369 MAKAV 373
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 62/375 (16%), Positives = 143/375 (38%), Gaps = 37/375 (9%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
DF T I EA + G Y+ E +AI H ++ + ++
Sbjct: 39 DFATAPCIIEALNQRLMHGVFGYSRWKND-EFLAAIAHWFSTQHYTAIDSQTVVYGPSVI 97
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 220
+ + + G+ V+I P +Y + + + + + + D L
Sbjct: 98 YMVSELIRQWSETGEGVVIHTP---AYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKL 154
Query: 221 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279
E+ L + + ++++LCSP NPTG V+ + L+ +A + +H + V+SDEI+ +++
Sbjct: 155 EAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVISDEIHMDMVWGEQP 213
Query: 280 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQ 339
H ++++ + SK+F + Y + + + + S
Sbjct: 214 HIPWSNVAR--GDWALLTSGSKSFNIPALTGAYG------IIENSSSRDAYLSALKGRDG 265
Query: 340 KAGVAALGL-----GYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLF 392
+ + L L Y G + + ++ ++ + PQ + +
Sbjct: 266 LSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAW 325
Query: 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTL 450
+D + L + L+++ +VA++PG +G++ +R++ + L
Sbjct: 326 LDLRPLNIDDNA----------LQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKL 375
Query: 451 QAAVERIKKGLLTLR 465
+ V + + +R
Sbjct: 376 EKGVAGLINAIRAVR 390
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-51
Identities = 94/414 (22%), Positives = 166/414 (40%), Gaps = 39/414 (9%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 124
L+ R N +K S + +A+ L + GV +I LAAG+PD + P ++ E + +
Sbjct: 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP 66
Query: 125 T--RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 182
YTP G ELR + LK+ + L +P+ I+++ G ++ + PGD VI
Sbjct: 67 KSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVI 126
Query: 183 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-----LILCSPS 237
P +++ A +P +N + +LE K+ E LI P+
Sbjct: 127 TENPSYINTLLAFEQLGAKIEGVPV---DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPT 183
Query: 238 --NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 295
NP G + I +K+ LL++ D Y + Y +L R +
Sbjct: 184 GQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDNE-GRVIV 241
Query: 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 355
SK TG+R+G+I + + A +ISQ + L GY
Sbjct: 242 AGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYH 300
Query: 356 VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 414
+ + ++E+RD ++K+ L + ++P ++ EG + S
Sbjct: 301 LEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFL-------PEGA----DGIS 349
Query: 415 LCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
L+++ V +VPG F IR++++ + E I G+ L
Sbjct: 350 FANELMEREGVVVVPGKPFYTDESGKNAIRLNFSR------PSKEEIPIGIKKL 397
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 4e-51
Identities = 68/376 (18%), Positives = 147/376 (39%), Gaps = 38/376 (10%)
Query: 105 DFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 161
DF I + ++ G+ E A+ + E+ D + ++
Sbjct: 38 DFKIAPEIMASMEEKLKVAAFGYESVPA-----EYYKAVADWEEIEHRARPKEDWCVFAS 92
Query: 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDP 217
G +I V SPGD++++ P Y + + + + + ++
Sbjct: 93 GVVPAISAMVRQFTSPGDQILVQEP---VYNMFYSVIEGNGRRVISSDLIYENSKYSVNW 149
Query: 218 KVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 276
LE KL T R+++ C+P NP G + + + IA + AKH ++L++SDEI+ ++
Sbjct: 150 ADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKH-QVLLISDEIHGDLVLT 208
Query: 277 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 333
T ++ +++ SK F + I P A
Sbjct: 209 DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGE 268
Query: 334 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 391
+ ++ A +AA Y G + ++ + R+ + + + + VK+ + ++
Sbjct: 269 PNLLAIPAAIAA----YEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLA 324
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTT 449
++D S + + C+YL +K + + G+ + + +RI+ A
Sbjct: 325 WVDISALGMNAED----------FCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKEL 374
Query: 450 LQAAVERIKKGLLTLR 465
+ ++R+K+G+L L
Sbjct: 375 VIDGMQRLKQGVLNLN 390
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 9e-51
Identities = 91/372 (24%), Positives = 160/372 (43%), Gaps = 39/372 (10%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
DF I ++ N + + YT +I + L + + ++ S G
Sbjct: 43 DFKAAPCIIDSLKNRLEQEIYGYTTR--PDSYNESIVNWLYRRHNWKIKSEWLIYSPGVI 100
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN--FLLDPKV 219
+I + + D+++I P Y + +I P + EN +++D +
Sbjct: 101 PAISLLINELTKANDKIMIQEP---VYSPFNSVVKNNNRELIISPLQKLENGNYIMDYED 157
Query: 220 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279
+E+K+ + +L ILC+P NP G V+ K+ L ++ I KH + ++SDEI+ II
Sbjct: 158 IENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKH-NVKIISDEIHSDIILKKHK 215
Query: 280 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----KHFVAACNKIQSQFTSG 333
H AS+ + T+T +K F + G + Y+ P K A +I
Sbjct: 216 HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID---IKR 272
Query: 334 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 391
+ S A A+ Y GE + ++ DF +K E + +K+ +P+G + L
Sbjct: 273 NNCFSLVATEAS----YNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLL 328
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTT 449
++DFS S+ E L L+ K +VAL G++FG RI+ A +
Sbjct: 329 WVDFSALGLSDEE----------LESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSM 378
Query: 450 LQAAVERIKKGL 461
L+ A+ RIK +
Sbjct: 379 LEEALIRIKNAI 390
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 1e-50
Identities = 84/373 (22%), Positives = 144/373 (38%), Gaps = 32/373 (8%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
+F P + E + E YT T E + + +K+ + D I+ + G
Sbjct: 42 EFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVV 99
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 220
++ AV PGD VII P Y + + + +D + L
Sbjct: 100 PAVFNAVREFTKPGDGVIIITP---VYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKL 156
Query: 221 ESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279
E + ++ L+ CSP NP G V+ K+ L +I IV K L++ SDEI+ +I
Sbjct: 157 EKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYE 215
Query: 280 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSGASS 336
HT F S+ + ++T+T SK F + G + I P + ++
Sbjct: 216 HTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTT 275
Query: 337 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFID 394
+ KA Y + +K + + + F +K +G + +ID
Sbjct: 276 LGYKACEIC----YKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWID 331
Query: 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQA 452
F + +++ KAQ+ G FGD RI+ AA + +Q
Sbjct: 332 FRALKMDHKA----------MEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQE 381
Query: 453 AVERIKKGLLTLR 465
++ER+ K L L+
Sbjct: 382 SLERLNKALKDLK 394
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 9e-50
Identities = 88/372 (23%), Positives = 158/372 (42%), Gaps = 38/372 (10%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
DF+ + +A + + YT + EL A+ K E+ S+ + I+ G
Sbjct: 42 DFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVV 99
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 220
+I A+ A G+ V+I +P YP AR V + F +D + L
Sbjct: 100 PAISIAIQAFTKEGEAVLINSP---VYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQL 156
Query: 221 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279
E+ + E +L +LC+P NP G V+ + +L++I + KH ++++SDEI++ +
Sbjct: 157 ENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKH-HVILVSDEIHQDLTLFGHE 215
Query: 280 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----KHFVAACNKIQSQFTSG 333
H SF ++ P + L ++ +K F + G + Y F
Sbjct: 216 HVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN---NHHE 272
Query: 334 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 391
SS+ A A Y G+ + + E F V+ F + +K+ +PQG + +
Sbjct: 273 VSSLGYIATETA----YRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLI 328
Query: 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTT 449
++DFS Y ++ L L D+A+V L G +G + R++ AA +
Sbjct: 329 WLDFSDYGLTDDA----------LFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSL 378
Query: 450 LQAAVERIKKGL 461
++ +RI L
Sbjct: 379 VEEICKRIVCCL 390
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 2e-49
Identities = 87/368 (23%), Positives = 156/368 (42%), Gaps = 31/368 (8%)
Query: 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164
DF I EA IN RE Y +L A+ ++E+ + + IL +G
Sbjct: 72 DFLPVPEIKEAIINYGREHIFGYN--YFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVV 129
Query: 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 220
+I A+ A GD V+I +P Y AR V +I F +D + L
Sbjct: 130 PAISIALQAFSEKGDAVLINSP---VYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQL 186
Query: 221 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 279
E + + ++ +LCSP NP G V+ + L +IA + KH ++++SDEI++ + T
Sbjct: 187 EKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKH-GVILVSDEIHQDLALFGNT 245
Query: 280 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSGASS 336
H S +L + T+ ++ +K F + G + + I + + +
Sbjct: 246 HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPT 305
Query: 337 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395
+ A AA + G+ + ++ ++K +K+ EP+G + +++DF
Sbjct: 306 VGMIATQAA----FQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDF 361
Query: 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAA 453
S Y ++ + L L ++A+V L G FG + R++ A T+Q A
Sbjct: 362 SAYAIAQPQ----------LSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEA 411
Query: 454 VERIKKGL 461
+ RI
Sbjct: 412 LSRIISVF 419
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-43
Identities = 75/353 (21%), Positives = 136/353 (38%), Gaps = 43/353 (12%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSY 152
IRL E + + + + + RY P +ELR + + ++ G++
Sbjct: 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRY-PERDAVELRDELAAYITKQTGVAV 90
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212
T D + +NG+ + + Q + A PG + P + +P +A+ + + +
Sbjct: 91 TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--AD 148
Query: 213 FLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271
F +D LE ++ ++ + +P+NPTG V LD++ RI+ P ++++ DE Y
Sbjct: 149 FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS---LDDVERIINVAPGIVIV-DEAYA 204
Query: 272 HIIYAPATHTSFASLPGMW--ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329
+P+ T P RT SKAF G RLGY F+ A ++
Sbjct: 205 EFSPSPSATTLLEKYPTKLVVSRT-----MSKAFDFAGGRLGYFVANPAFIDAVMLVRLP 259
Query: 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 389
+ S++SQ A + AL V+ R + EL G + + F
Sbjct: 260 Y--HLSALSQAAAIVAL----RHSADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNF 312
Query: 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
FG + + + LD+ L+ G +R +
Sbjct: 313 VF--------------FGDFSDQHAAWQAFLDRG--VLI--RDVGIAGHLRTT 347
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 3e-43
Identities = 87/424 (20%), Positives = 161/424 (37%), Gaps = 59/424 (13%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 124
+S +K S I + A I G PD +T P +AE I + +
Sbjct: 21 ISKIGQNMKSS---IIREILKFAADKDA--ISFGGGVPDPETFPRKELAEIAKEIIEKEY 75
Query: 125 TR---YTPNAGTLELRSAICHKLKEENGLSY-TPDQILVSNGAKQSILQAVLAVCSPGDE 180
Y+ G L+ I L+ G++ D ++ + G++Q++
Sbjct: 76 HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESY 135
Query: 181 VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP- 236
++ P +Y R A V++P E+ +D VLE KL+E + +
Sbjct: 136 CVLDDP---AYLGAINAFRQYLANFVVVPL---EDDGMDLNVLERKLSEFDKNGKIKQVK 189
Query: 237 --------SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288
NP G + I K+ L ++ D+ Y + Y T + G
Sbjct: 190 FIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKI-G 247
Query: 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 348
ER + +N FSK A G R+G +AG K F+ + + + +I+ + L
Sbjct: 248 GPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLER 306
Query: 349 GYAGGEVVSKMVKAFRERRDFLVKS----FGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 404
E + ++ +R +R ++ + F ++ GVK + +G ++++ E
Sbjct: 307 YDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTL-------PE 358
Query: 405 GFGKIENSESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKG 460
GF ++ + Y + +V VPG F +R+S+ E+I +G
Sbjct: 359 GF----DTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCL------PPDEKIVEG 407
Query: 461 LLTL 464
+ L
Sbjct: 408 IKRL 411
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 5e-43
Identities = 70/354 (19%), Positives = 128/354 (36%), Gaps = 49/354 (13%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
+ +L++ E T +A N+ E Y P+ LR + L +
Sbjct: 34 ITKLSSNENPLGTSKKVAAIQANSSVE-TEIY-PDGWASSLRKEVADFY----QLE--EE 85
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
+++ + G + I + ++ P +V Y + A I A +P ++
Sbjct: 86 ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEH 143
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHI 273
D + + + + EK+ ++ +C+P+NPTG+ +I + + P L+VL DE Y
Sbjct: 144 DLEGMLNAIDEKTTIVWICNPNNPTGNYIEL---ADIQAFLDRVPSDVLVVL-DEAYIE- 198
Query: 274 IYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328
Y L ++ RT FSK + + R+GY K + N ++
Sbjct: 199 -YVTPQPEKHEKLVRTYKNLIITRT-----FSKIYGLASARVGYGIADKEIIRQLNIVRP 252
Query: 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388
F +SI QK + A+ + + + E VK+ G
Sbjct: 253 PF--NTTSIGQKLAIEAI----KDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN 306
Query: 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
F + ID + ++ YL G A G T +RI+
Sbjct: 307 F-VLIDLG-------------IEAGTIFSYLEKNG-YITRSGAALGFPTAVRIT 345
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 9e-43
Identities = 82/416 (19%), Positives = 161/416 (38%), Gaps = 57/416 (13%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 124
++ S I + + G+ + A G P + P AEA +RE
Sbjct: 10 FGKGAGRIQAS---TIRELLKLTQRPGI--LSFAGGLPAPELFPKEEAAEAAARILREKG 64
Query: 125 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181
Y+P G LR+ + + P+++L++ G++Q++ G V
Sbjct: 65 EVALQYSPTEGYAPLRAFVAE------WIGVRPEEVLITTGSQQALDLVGKVFLDEGSPV 118
Query: 182 IIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS- 237
++ AP SY + R+ + +P D LE L + + PS
Sbjct: 119 LLEAP---SYMGAIQAFRLQGPRFLTVPA---GEEGPDLDALEEVLKRERPRFLYLIPSF 172
Query: 238 -NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL--PGMWERTL 294
NPTG + P + ++V + L+V+ D+ Y + + A S L + +
Sbjct: 173 QNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI 231
Query: 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 354
+ FSK + G R+ + + + + ++Q L G++ E
Sbjct: 232 YLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--E 288
Query: 355 VVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412
+ ++ + +RE+ ++ + + V+ + P+G +++++ +G ++
Sbjct: 289 RLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMEL-------PKGL----SA 337
Query: 413 ESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
E L R L + VA VPG F G + +R+SYA E I +G+ L
Sbjct: 338 EGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYAT------LDREGIAEGVRRL 386
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 4e-42
Identities = 69/351 (19%), Positives = 123/351 (35%), Gaps = 41/351 (11%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
++ +A PV + A I+ + + RY P+A L A+ +
Sbjct: 26 LLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALARHH----QVP--AS 77
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
IL NG +SI + +I P + Y + R ++ + L
Sbjct: 78 WILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL 135
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
+LE LT L LC+P+NPTG + + LL IA L+L DE + +
Sbjct: 136 TDAILE-ALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL-DEAFID--F 191
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGA 334
P T F + +K +A+ G RLGY + +A + Q ++
Sbjct: 192 IPH-ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS--V 248
Query: 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394
++++ AG AL RE ++ +L + + + + L
Sbjct: 249 NALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL-- 302
Query: 395 FSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFG--DDTCIRIS 442
+ E L R LL + ++ + + D R++
Sbjct: 303 -------------RCEREDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVA 339
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 6e-42
Identities = 72/351 (20%), Positives = 134/351 (38%), Gaps = 48/351 (13%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
+ L A E + + +N RY P + G+ P+
Sbjct: 31 DVWLNANEYPTAVEFQLTQQTLN-------RY-PECQPKAVIENYAQYA----GVK--PE 76
Query: 156 QILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
Q+LVS GA + I + A C PG D ++ P + Y A +PT +N+
Sbjct: 77 QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQ 134
Query: 215 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHI 273
LD + + KL + +++ +CSP+NPTG + + ++ + +V++DE Y I
Sbjct: 135 LDLQGISDKL-DGVKVVYVCSPNNPTGQLINP---QDFRTLLELTRGKAIVVADEAY--I 188
Query: 274 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333
+ P S A + + SKAFA+ G R G+ + + K+ + +
Sbjct: 189 EFCPQ--ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPL- 245
Query: 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 393
S+ AL G + + V R++L+ + E+ V+
Sbjct: 246 -STPVADIAAQALSP--QGIVAMRERVAQIIAEREYLIAALKEIPCVE------------ 290
Query: 394 DFSTYYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
+ SE + + + S ++ + L D+ + C+RI+
Sbjct: 291 ---QVFDSETN-YILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRIT 337
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 8e-41
Identities = 77/419 (18%), Positives = 173/419 (41%), Gaps = 55/419 (13%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 124
S + ++ S + + + + + I LA G P+ T P +I + + + +
Sbjct: 54 FSKKALEMRAS---EVRELLKLVETSDI--ISLAGGLPNPKTFPKEIIRDILVEIMEKYA 108
Query: 125 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181
+ Y G LR + L + + I++++G++Q++ +PGD V
Sbjct: 109 DKALQYGTTKGFTPLRETLMKWLGKR-YGISQDNDIMITSGSQQALDLIGRVFLNPGDIV 167
Query: 182 IIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-----LIL 233
++ AP +Y + + + +P ++ + ++LE KL E ++
Sbjct: 168 VVEAP---TYLAALQAFNFYEPQYIQIPL---DDEGMKVEILEEKLKELKSQGKKVKVVY 221
Query: 234 CSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291
P+ NP G ++ + + +++ +V+ D+ Y + Y+ +L
Sbjct: 222 TVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDNE-G 279
Query: 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351
R + + FSK A G+R+G++ G + + + Q + GY
Sbjct: 280 RVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL 338
Query: 352 GGEVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409
+ + ++ K ++ RRD ++++ E EGVK ++P+G ++++ +G
Sbjct: 339 -EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTL-------PDGI--- 387
Query: 410 ENSESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAASLTTLQAAVERIKKGLLTL 464
+S+ + + K VA VPG+AF +R+++ ++I +G+ L
Sbjct: 388 -DSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTY------VDEDKIMEGIKRL 438
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 9e-41
Identities = 62/361 (17%), Positives = 131/361 (36%), Gaps = 42/361 (11%)
Query: 86 ATALAQAGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144
T G ++ ++ P P I + Y P+ L +I + L
Sbjct: 18 YTEGVFKGRELLDYSSNINP-LGIPKSFLNNIDEGI-KNLGVY-PDVNYRRLNKSIENYL 74
Query: 145 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 204
L I++ NGA + I ++ ++++I P + Y A+ + V
Sbjct: 75 ----KLK--DIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVF 124
Query: 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264
EN +D + + SK+ + +I+ +P+NP G + K + ++ + + ++
Sbjct: 125 SYLD--ENMCIDYEDIISKIDDV-DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTII 181
Query: 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAAC 323
+ DE + I + +SF + + +K FAM G R GY I K A
Sbjct: 182 I-DEAF--IEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKI 238
Query: 324 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383
Q+ + + ++ A + L + + + ++ R ++ ++ +K
Sbjct: 239 KAKQNPWN--INCFAEMAAINCL----KDTNYIEESLLWIKKERKRFIEELNKIGFIKRV 292
Query: 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRI 441
A ++ + E L LL + + + F DD+ +R
Sbjct: 293 FSPHANFVLCRLENI------------SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRF 339
Query: 442 S 442
+
Sbjct: 340 A 340
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 3e-40
Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 40/362 (11%)
Query: 85 QATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143
++ A IR+ E A +A+ + RY L L + +
Sbjct: 6 ESAAFTAPSTDNPIRINFNENPLGMSPKAQAAARDAVVKAN-RY-AKNEILMLGNKLAAH 63
Query: 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 203
+ IL++ G+ + I A+ A S +++IP + A+IA
Sbjct: 64 H----QVE--APSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVT 117
Query: 204 ILPTRISENFLLDPKVLESKLTEK--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP- 260
+ +N+ D + L++ + ++ L +P+NPTG++ P D I +A P
Sbjct: 118 KVKML--DNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPA---DVIEPWIASKPA 172
Query: 261 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320
+ + DE Y + P + + E + + FSK AM G R+GY +
Sbjct: 173 NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVI 232
Query: 321 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380
A + + + A +A++ ++ K+ R L+K+ +L +
Sbjct: 233 ALMGRYVAGE--KINFSGVDAALASM----NDSAFITYSKKSNDVSRQILLKALEDL-KL 285
Query: 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 440
+G F +F + ++ D L+ D R
Sbjct: 286 PYLPSEGNF-VFHQLV-------------VPLKDYQTHMADAG--VLIGRAFPPADNWCR 329
Query: 441 IS 442
IS
Sbjct: 330 IS 331
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 58/351 (16%), Positives = 126/351 (35%), Gaps = 50/351 (14%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
++ + + + + + Y P LR + + + +
Sbjct: 17 IVNFSTTVWTDGDKDHLEKHLVENL-NCIRHY-PEPDAGTLRQMLAKRN----SVD--NN 68
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
ILV+NG + Q A G +I P + Y + R+ + P+ E+
Sbjct: 69 AILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSN--EDIG- 123
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
LC+P+NP G + + EI R++ HP + D+ Y +
Sbjct: 124 ------EADFSNMDFCWLCNPNNPDGRLLQR---TEILRLLNDHPDTTFVLDQSYVS--F 172
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335
A + G + + V FS A+ + G R+GYI K F+ + + +
Sbjct: 173 TTEEVIRPADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWA--VN 229
Query: 336 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395
+++ +A L + ++ ++ + + L+GV++ F+L
Sbjct: 230 ALAIEAAKFIL----IHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLL--- 282
Query: 396 STYYGSEAEGFGKIENSES--LCRYLLDKAQVALVPGDAFG--DDTCIRIS 442
+++ + L +Y+L++ + + F D++ +RI+
Sbjct: 283 ------------RLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRIT 321
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 8e-39
Identities = 71/356 (19%), Positives = 132/356 (37%), Gaps = 50/356 (14%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
VI+LA+ E F TP E + Y P+ +EL+S + K + +
Sbjct: 32 VIKLASNENPFGTPPKAIEC-LRQNANKAHLY-PDDSMIELKSTLAQKY----KVQ--NE 83
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
I++ G+ Q I A+ + + + + + Y A+ A + + L
Sbjct: 84 NIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI--THNLD 141
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHI 273
+ K L ++ +L+ LC P+NP G E + L+V+ D Y
Sbjct: 142 EFKKLYETHKDEIKLIFLCLPNNPLGECLDA---SEATEFIKGVNEDCLVVI-DAAYNEF 197
Query: 274 IYAPATHTSFASLPGMWE-------RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326
+ + E T FSK + + G R+GY + ++A K+
Sbjct: 198 ASFKDSKKHLEPCELIKEFDNVLYLGT-----FSKLYGLGGLRIGYGIANANIISAFYKL 252
Query: 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386
++ F S+++ KA VAA+ E K ++ + + + + +K+ +
Sbjct: 253 RAPF--NVSNLALKAAVAAM----DDDEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSY 305
Query: 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442
F + F NS L LL K + + ++G + IRI+
Sbjct: 306 TNF-ITYFFDEK------------NSTDLSEKLLKKG-IIIRNLKSYGLN-AIRIT 346
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 8e-39
Identities = 79/437 (18%), Positives = 158/437 (36%), Gaps = 64/437 (14%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 124
++ A PS I L++ S+I LA G P+ + P N F
Sbjct: 7 ITAASAARNPS---PIRTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQF 63
Query: 125 TR--------YTPNAGTLELRSAICHKLKEENGLSY-------TPDQILVSNGAKQSILQ 169
Y+P+AG EL S + + + + V++G++Q + +
Sbjct: 64 GEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCK 123
Query: 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 229
+ +PGD V++ P + + + + + + + P L L+
Sbjct: 124 VFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS---DESGIVPDSLRDILSRWKP 180
Query: 230 L-----------LILCSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 276
+ P+ NPTG+ EI + K+ L++ D+ Y + +
Sbjct: 181 EDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPYYFLQFN 239
Query: 277 PATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334
+F S+ G R + + FSK + +G R+G++ GPK + T
Sbjct: 240 KFRVPTFLSMDVDG---RVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHP 295
Query: 335 SSISQKAGVAALGLGYAGG--EVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFY 390
S+ +Q L G V +++ + ++D ++ + + + P +
Sbjct: 296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF 355
Query: 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----GDDTCIRISYA- 444
L+I I + + L K V ++PG+AF +R S++
Sbjct: 356 LWIKVK-----------GINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS 404
Query: 445 ASLTTLQAAVERIKKGL 461
AS + A + + + +
Sbjct: 405 ASPEQMDVAFQVLAQLI 421
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-38
Identities = 74/354 (20%), Positives = 140/354 (39%), Gaps = 45/354 (12%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 154
+++L A E + P + + E RY P + LR+ + + +
Sbjct: 32 LVKLDAMENPYRLPPALRSELAARLGEVALNRY-PVPSSEALRAKLKEVM----QVP-AG 85
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
++L+ NG+ + I LA PG +V+ P P +V Y A+ A V +P R +F
Sbjct: 86 MEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFT 143
Query: 215 LD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP----RLLVLSDEI 269
LD +L + + ++ L P+NPTG+++ ++ IV R LV+ DE
Sbjct: 144 LDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD---AADMEAIVRAAQGSVCRSLVVVDEA 200
Query: 270 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329
Y+ +A S+ S + L + SK + G RLGY+AG ++ +K++
Sbjct: 201 YQP--FAQE---SWMSRLTDFGNLLVMRTVSK-LGLAGIRLGYVAGDPQWLEQLDKVRPP 254
Query: 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 389
+ + +++ + AL V+ + R R + + GV + F
Sbjct: 255 YNV--NVLTEATALFAL----EHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANF 308
Query: 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA-QVALVPGDAFGDDTCIRIS 442
L ++ ++ LL + + V C+R++
Sbjct: 309 LLA---------------RVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVT 347
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-38
Identities = 68/351 (19%), Positives = 130/351 (37%), Gaps = 48/351 (13%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIR---EGFTRYTPNAGTLELRSAICHKLKEENGLSY 152
I+L E + + +A + + Y P+A + +LR G
Sbjct: 28 WIKLNTNENPYPPSPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELY----GFD- 81
Query: 153 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212
P I+++NG+ + + + A + G+E+ P + Y +A + A +
Sbjct: 82 -PSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GD 138
Query: 213 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272
F + + ++ L +P+ P G +P L+ I + + +LVL DE Y
Sbjct: 139 FRIAGFP----ERYEGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVL-DETY-- 188
Query: 273 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332
+A + + L E + SK++++ G R+G +AA +KI+ +
Sbjct: 189 AEFAES---NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYN- 244
Query: 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392
++Q A VAAL +S+ + RE R++ + G + QG + LF
Sbjct: 245 -LDRLAQAACVAAL----RDQAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNY-LF 297
Query: 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDDTCIRIS 442
+ + + L + LV +RIS
Sbjct: 298 ATPPD------------RDGKRVYDGLYARK--VLVRHFSDPLLAHGMRIS 334
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 64/362 (17%), Positives = 117/362 (32%), Gaps = 48/362 (13%)
Query: 81 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 140
++ + +A + LA E + A I A RY P + +
Sbjct: 3 SVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAA-IAAAAARINRY-PFDAEPRVMRKL 60
Query: 141 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 200
D +++ G + + + P + Y ++
Sbjct: 61 AEHF----SCP--EDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGL 112
Query: 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260
+ ++ LLDP L + ++L +PSNPTG E+ ++ +
Sbjct: 113 RHFEIGLT--DDLLLDPNDLAQ--VSRDDCVVLANPSNPTGQALS---AGELDQLRQRAG 165
Query: 261 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320
L++ DE Y Y+ A L FSK++ + G RLG + GP +
Sbjct: 166 -KLLI-DETYVD--YSSFRARGLAYGE----NELVFRSFSKSYGLAGLRLGALFGPSELI 217
Query: 321 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380
AA + Q ++ A AAL + +R + + L G
Sbjct: 218 AAMKRKQWFCNV--GTLDLHALEAAL----DNDRAREAHIAKTLAQRRRVADALRGL-GY 270
Query: 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIR 440
+++ + F L + E R+L ++ + + FG IR
Sbjct: 271 RVASSEANFVLV---------------ENAAGERTLRFLRERG-IQVKDAGQFGLHHHIR 314
Query: 441 IS 442
IS
Sbjct: 315 IS 316
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 7e-34
Identities = 58/444 (13%), Positives = 131/444 (29%), Gaps = 95/444 (21%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV---LIAEAGINAIRE 122
+ R+ V+ +T + L + L G+P + + L++ G + +
Sbjct: 10 DAARLAQVREE----VTAKYAELKAKN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK 64
Query: 123 GFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA------ 173
Y G ++R L D ++ +G+ +I+ +++
Sbjct: 65 DGVDCRNYGGLLGIADIRELWAE------ALGLPADLVVAQDGSSLNIMFDLISWSYTWG 118
Query: 174 --------VCSPGDEVIIPAPFWVSY-----------PEMARIADATPVILPTRISENFL 214
+ + P P Y EM + +
Sbjct: 119 NNDSSRPWSAEEKVKWLCPVP---GYDRHFTITEHFGFEMINVP-----------MTDEG 164
Query: 215 LDPKVLESKLTEKSRLLILCSP--SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272
D V+ + + + P NPTG + + E+A + P ++ D Y
Sbjct: 165 PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYAL 224
Query: 273 IIYAPATHTSFASLP-----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327
+ + G R ++ SK G + + A K +
Sbjct: 225 HTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH-AGSGVSFFASSKENIEWYASHA 283
Query: 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----LVKSFGELEGVKMS 383
+ G + ++Q A G + K + + + L E K +
Sbjct: 284 NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343
Query: 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ---VALVPGDAF------G 434
P G +++ +D +++ A+ +AL +
Sbjct: 344 SPTGGYFISVDV----------------VPGTASRVVELAKEAGIALTGAGSSFPLHNDP 387
Query: 435 DDTCIRISYA-ASLTTLQAAVERI 457
++ IR++ + + L+ A++
Sbjct: 388 NNENIRLAPSLPPVAELEVAMDGF 411
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 9e-34
Identities = 56/435 (12%), Positives = 123/435 (28%), Gaps = 76/435 (17%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIR 121
+ R+ I + L + L G+P + +L +
Sbjct: 11 DAERIGLFHED----IKRKFDELKSKN-LKLDLTRGKPSSEQLDFADELLALPGKGDFKA 65
Query: 122 EGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--- 175
T Y G +++R L +Q+L + + +I+ V++
Sbjct: 66 ADGTDVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDASSLNIMFDVISWSYIF 119
Query: 176 -----------SPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESK 223
+ I P P Y I ++ ++E+ D +E
Sbjct: 120 GNNDSVQPWSKEETVKWICPVP---GYDRHFSITERFGFEMISVPMNEDGP-DMDAVEEL 175
Query: 224 LTEKSRLLILCSP--SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 281
+ + P SNPTG +++ ++ + P V+ D Y
Sbjct: 176 VKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPE 235
Query: 282 SFASLP-----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 336
+ G R SK G + + G +
Sbjct: 236 VIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHAGIRGIGPNK 294
Query: 337 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----LVKSFGELEGVKMSEPQGAFYLF 392
++Q A G V+ K + + + L E + + P G +++
Sbjct: 295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFIS 354
Query: 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ---VALVPGDAF------GDDTCIRISY 443
+D + + A+ +AL + ++ +R++
Sbjct: 355 LDV----------------VPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAP 398
Query: 444 A-ASLTTLQAAVERI 457
+ + L+ A++ +
Sbjct: 399 SLPPVEELEVAMDGV 413
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 2e-32
Identities = 69/328 (21%), Positives = 123/328 (37%), Gaps = 46/328 (14%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 154
LA E F P + + + Y ++ EL I L + +
Sbjct: 21 KTYLALNENPFPFPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYL---DTDFLSK 76
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
+ + V NGA + I +L D + P + Y A+ A + +P ++
Sbjct: 77 NNVSVGNGADEIIYVMMLM----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT--KDLR 130
Query: 215 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274
+ + ++ + +P+NPTG V+ +EI RI+ V DE Y
Sbjct: 131 IPEVN-----VGEGDVVFIPNPNNPTGHVFE---REEIERILKTGA--FVALDEAY---- 176
Query: 275 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 334
S+ +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 177 -YEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNV-- 233
Query: 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F
Sbjct: 234 SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFV-- 286
Query: 395 FSTYYGSEAEGFGKIENSESLCRYLLDK 422
F + E E L +L K
Sbjct: 287 -----------FMEKEEKERLLEHLRTK 303
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-31
Identities = 67/417 (16%), Positives = 131/417 (31%), Gaps = 63/417 (15%)
Query: 82 ITDQATALAQAGVSVIRLAAGEPDFDT-PV---LIAEAGINAIREGFTR---YT-PNAGT 133
A G++ + + G+P + L+ G +R Y AG
Sbjct: 14 ARQAYEAFKARGLN-LNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGL 72
Query: 134 LELRSAICHKLKEE-------NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
R+ L + N S ++++ + + S ++I+ P
Sbjct: 73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVP 132
Query: 187 FWVSYPE-MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSP--SNPTGS 242
Y + +L + + D +E + IL P SNP G
Sbjct: 133 ---GYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGE 188
Query: 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA------PATHTSFASLPGMWERTLTV 296
+A + A P + +D+ Y P A G +R
Sbjct: 189 TISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248
Query: 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-- 354
SK G LG++A + + +K + G + + Q V L G E
Sbjct: 249 ASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGL 307
Query: 355 ---VVSKMVKAFRERRDFLVKSFGEL-EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410
+ + FR + L GE E + P+G +++ +D
Sbjct: 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDT--------------- 352
Query: 411 NSESLCRYLLDKAQ---VALVPGDAF------GDDTCIRISYA-ASLTTLQAAVERI 457
+E + ++ A+ V+L P A + +R++ + ++ A++ +
Sbjct: 353 -AEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVV 408
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 4e-10
Identities = 72/483 (14%), Positives = 136/483 (28%), Gaps = 146/483 (30%)
Query: 1 MANSLHSSTSFISNPVNFGHSKIPAQIPGSVSFPSRYLHNFNLNNDRRVLRVMACSGVEE 60
M L + S I +I + R L + N VL
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--------- 251
Query: 61 VQVDVSLSPRV-NAVKPS-KTVAIT-DQ--ATALAQAGVSVIRLAAGEPDFDTPVLIAEA 115
+V + + NA S K + T + L+ A + I L TP E
Sbjct: 252 ---NVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-TP---DEV 303
Query: 116 GINAIREGFTRYTPNAGTLELRSAICH-----------KLKEENGLSYTPDQILVSNGAK 164
+ +Y + +L + +++ T D N K
Sbjct: 304 -----KSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDK 354
Query: 165 -QSILQAVLAVCSPGDE-------VIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 216
+I+++ L V P + + F P A I ++ + ++ D
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----F----PPSAHIPTILLSLIWFDVIKS---D 403
Query: 217 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR----IVAKHPRLL--------- 263
V+ +KL + S L+ P T S+ ++ E+ A H ++
Sbjct: 404 VMVVVNKLHKYS--LVEKQPKESTISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 264 --------VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315
L Y HI + H E + F F L +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH----HLKNI------EHPERMTLFRMVF------LDF--- 500
Query: 316 PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375
F+ KI + A G + ++ + + ++ +
Sbjct: 501 --RFLEQ--KI------------RHDSTAWNASGS-----ILNTLQQLKFYKPYICDNDP 539
Query: 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFG 434
+ E + +DF + S+ LL ++AL+ +A
Sbjct: 540 KYERL--------VNAILDFLPKIEE------NLICSKYTD--LL---RIALMAEDEAIF 580
Query: 435 DDT 437
++
Sbjct: 581 EEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 7e-04
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 71/240 (29%)
Query: 264 VLSDEIYEHIIYAPATHTSFASLPGMW----ERTLTVNGFSKA-------FAMTGWR--- 309
+LS E +HII + + L W ++ V F + F M+ +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 310 -------LGYIAG-----------PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 351
YI K+ V+ + + V G+ +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGS 161
Query: 352 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411
G K A + V+ KM F+ ++ E +E
Sbjct: 162 G-----KTWVALDVCLSYKVQC-------KM--DFKIFW--LNLKNCNSPETV----LEM 201
Query: 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI------KKGLLTLR 465
+ L Y +D + D I + ++QA + R+ + LL L
Sbjct: 202 LQKLL-YQIDPNWTSRS-------DHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLL 251
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 25/127 (19%)
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIADATPVILP 206
D V+NGA+++ + ++ V++ E A ++P
Sbjct: 70 DVARVTNGAREAKFAVMHSLAKKDAWVVM--------DENCHYSSYVAAERAGLNIALVP 121
Query: 207 TRISENFLLDPKVLESKLTEKSR-----LLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261
++ + P+ + E + L ++ P G++ + +IA++ +++
Sbjct: 122 KTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-D 177
Query: 262 LLVLSDE 268
+ +L +
Sbjct: 178 VPLLVNG 184
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 177 PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLLIL 233
GDEVI P+ WVS M + A PV + + ++ P+ +E+ +T +++ +I
Sbjct: 78 EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR----DTLMVTPEHIEAAITPQTKAII- 132
Query: 234 CSPSNP---TGSVYPKNLLDEIARIVAKHPRLLVLSD 267
P G P + LD I + ++ + V+ D
Sbjct: 133 -----PVHYAG--APAD-LDAIYALGERY-GIPVIED 160
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Length = 424 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 157 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRIS 210
+ N LQ + EVI+P + + P R TPV I P
Sbjct: 71 VATCNATAG----LQLLAHAAGLTGEVIMP-SMTFAATPHALRWIGLTPVFADIDP---- 121
Query: 211 ENFLLDPKVLESKLTEKSR 229
+ LDP + + +T ++
Sbjct: 122 DTGNLDPDQVAAAVTPRTS 140
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Length = 367 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 157 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
I +NG A Q + A L V PGDEVI P +V+ E + A PV I P
Sbjct: 54 ISCANGTDALQIVQMA-LGV-GPGDEVITPGFTYVATAETVALLGAKPVYVDIDP----R 107
Query: 212 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265
+ LDP++LE+ +T +++ +I C+ D I I +K+ + V+
Sbjct: 108 TYNLDPQLLEAAITPRTKAIIPVSLYGQCAD------------FDAINAIASKY-GIPVI 154
Query: 266 SD 267
D
Sbjct: 155 ED 156
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Length = 418 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Query: 157 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
+ ++G+ + L L GDEVI+P+ W++ +A PV + +
Sbjct: 61 VPTTSGS--TALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA----D 114
Query: 212 NFLLDPKVLESKLTEKSRLLI----LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+ +DP++++S +T+K++ +I S +N +DEI I +H L V+ D
Sbjct: 115 TYCIDPQLIKSAITDKTKAIIPVHLFGSMAN----------MDEINEIAQEH-NLFVIED 163
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Length = 399 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 30/122 (24%)
Query: 157 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
+ V++G A Q L+ L + PGDEVI+P+ +++ ATPV +
Sbjct: 82 VGVNSGMDALQLALRG-LGI-GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE----D 135
Query: 212 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265
+ LDP ++E +T ++R L+ + +D + + +H L ++
Sbjct: 136 HPTLDPLLVEKAITPRTRALLPVHLYGHPAD------------MDALRELADRH-GLHIV 182
Query: 266 SD 267
D
Sbjct: 183 ED 184
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} Length = 374 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 157 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214
I V G A + L + GDEVI A +++ A ATPV ++
Sbjct: 57 IGVGTGTDALAMSFKM-LNI-GAGDEVITCANTFIASVGAIVQAGATPV--LVDSENGYV 112
Query: 215 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVLSD 267
+DP+ +E+ +T+K++ ++ P + + +A+I KH L ++ D
Sbjct: 113 IDPEKIEAAITDKTKAIM------------PVHYTGNIADMPALAKIAKKH-NLHIVED 158
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Length = 373 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 30/122 (24%)
Query: 157 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 211
I NG A IL+ + GDEVI+P+ +++ A P+
Sbjct: 55 IGCGNGLDALHLILKG-YDI-GFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDI----R 108
Query: 212 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265
+ +DP ++ES +TEK++ +I + +DEI RI K+ L ++
Sbjct: 109 TYNIDPSLIESAITEKTKAIIAVHLYGQPAD------------MDEIKRIAKKY-NLKLI 155
Query: 266 SD 267
D
Sbjct: 156 ED 157
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 40/264 (15%), Positives = 80/264 (30%), Gaps = 49/264 (18%)
Query: 161 NGAKQSILQAVLAVCSPGDEVIIP---------APFWVSYPEMARIADATPVILPTRISE 211
NG IL + + ++++ A I+ + T S
Sbjct: 79 NGTTSGILSVIQSFSQKKGDILMARNVHKSVLHA---------LDISQQEGHFIETHQSP 129
Query: 212 NFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 270
KV S+L +L++L P N G + ++E+ + + + I
Sbjct: 130 LTNHYNKVNLSRLNNDGHKLVVLTYP-NYYGETFN---VEEVIKSLHQL--------NIP 177
Query: 271 EHIIYAPATHTSFASLPG---MWERTLTVNGFSK---AFAMTGWRL--GYIAGPKHFVAA 322
I A H P ++ V F K A M ++ +
Sbjct: 178 VLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEY 237
Query: 323 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382
+ Q+ +S + I AA + A R + +++ G +M
Sbjct: 238 LSYFQT--SSPSYLIMASLESAAQFYKTYDST----LFFAKRAQLIECLENK----GFEM 287
Query: 383 SEPQGAFYLFIDFSTYYGSEAEGF 406
+ L I + + G + + +
Sbjct: 288 LQVDDPLKLLIKYEGFTGHDIQNW 311
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 157 ILVSNG--AKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPV---ILPT 207
++VS+G A ++ A+ GDE+I+PA W + + I
Sbjct: 53 VMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI- 111
Query: 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+D + L+ +T+ ++ ++ N G P N DEI +I+ +++L D
Sbjct: 112 ---NTLNIDIESLKEAVTDSTKAIL---TVNLLG--NPNN-FDEINKIIGGR-DIILLED 161
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 177 PGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSR 229
PG EVI+P F ++S + A+ A V + + LDP+ + + +T +++
Sbjct: 77 PGTEVIVP-AFTFISSSQAAQRLGAVTVPVDVDA----ATYNLDPEAVAAAVTPRTK 128
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Length = 375 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 177 PGD--EVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLL 231
D E+I +V+ M + TPV I +D LE + E+++ +
Sbjct: 71 SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-----GNIDELALEKLINERTKAI 125
Query: 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267
+ + G ++ + ++ KH L LSD
Sbjct: 126 V---SVDYAG--KSVE-VESVQKLCKKH-SLSFLSD 154
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 43/265 (16%), Positives = 86/265 (32%), Gaps = 40/265 (15%)
Query: 162 GAKQSILQAVLA----------VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 211
G +S+L A+ + +P E ++P ++ + A+ V P +
Sbjct: 168 GGTESLLLAMKTYRDWARATKGITAP--EAVVPVSAHAAFDKAAQYFGIKLVRTP--LDA 223
Query: 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 271
++ D + +T + ++ +P P G V P + EIA + A+H + +
Sbjct: 224 DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGG 280
Query: 272 HIIYAPATHTS-----FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFVAACN 324
I+ L G+ + + + T L + A +
Sbjct: 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAAD 340
Query: 325 ---KIQSQFT-----SGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFG 375
+ T GA S + A + +LG GY + + D L
Sbjct: 341 WPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYL------DATRRILQAADRLKAGVR 394
Query: 376 ELEGVK-MSEPQGAFYLFIDFSTYY 399
+ +K + +P + D Y
Sbjct: 395 AIPSLKILGDPLWVIAVASDELNIY 419
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 100.0 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 100.0 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.98 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.98 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.98 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.98 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.98 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.98 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.98 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.98 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.98 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.97 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.97 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.97 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.97 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.97 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.97 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.97 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.97 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.97 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.97 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.97 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.97 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.97 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.97 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.97 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.97 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.97 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.97 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.97 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.97 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.97 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.97 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.96 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.96 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.96 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.96 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.96 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.96 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.96 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.96 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.96 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.96 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.96 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.95 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.95 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.95 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.95 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.95 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.95 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.95 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.95 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.94 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.9 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.94 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.94 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.94 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.94 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.94 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.94 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.94 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.93 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.93 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.93 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.93 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.92 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.92 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.92 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.91 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.91 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.91 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.9 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.9 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.9 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.87 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.85 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.84 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.81 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.8 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.8 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.79 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.78 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.69 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.62 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.61 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.55 | |
| 4ham_A | 134 | LMO2241 protein; structural genomics, PSI-biology, | 99.4 | |
| 3ic7_A | 126 | Putative transcriptional regulator; helix-turn-hel | 99.32 | |
| 3neu_A | 125 | LIN1836 protein; structural genomics, PSI-2, prote | 99.25 | |
| 2ek5_A | 129 | Predicted transcriptional regulators; helix-turn-h | 99.23 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 99.21 | |
| 3by6_A | 126 | Predicted transcriptional regulator; structural ge | 99.18 | |
| 3edp_A | 236 | LIN2111 protein; APC88337, listeria innocua CLIP11 | 99.04 | |
| 1hw1_A | 239 | FADR, fatty acid metabolism regulator protein; hel | 99.02 | |
| 2ra5_A | 247 | Putative transcriptional regulator; beta structure | 99.0 | |
| 2wv0_A | 243 | YVOA, HTH-type transcriptional repressor YVOA; DNA | 98.97 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 98.97 | |
| 3eet_A | 272 | Putative GNTR-family transcriptional regulator; st | 98.96 | |
| 3bwg_A | 239 | Uncharacterized HTH-type transcriptional regulato; | 98.92 | |
| 3f8m_A | 248 | GNTR-family protein transcriptional regulator; PHN | 98.85 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 98.79 | |
| 3ihu_A | 222 | Transcriptional regulator, GNTR family; YP_298823. | 98.78 | |
| 2di3_A | 239 | Bacterial regulatory proteins, GNTR family; helix- | 98.73 | |
| 3sxy_A | 218 | Transcriptional regulator, GNTR family; transcript | 98.7 | |
| 2hs5_A | 239 | Putative transcriptional regulator GNTR; APC6050, | 98.6 | |
| 3c7j_A | 237 | Transcriptional regulator, GNTR family; structural | 98.46 | |
| 2v7f_A | 150 | RPS19, RPS19E SSU ribosomal protein S19E; diamond | 97.62 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 97.15 | |
| 2gqq_A | 163 | Leucine-responsive regulatory protein; helix-turn- | 96.57 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 95.65 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 94.78 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 94.52 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 94.03 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 93.22 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 91.95 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 91.82 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 90.49 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 90.22 | |
| 3e3m_A | 355 | Transcriptional regulator, LACI family; structural | 90.08 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 89.91 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 88.32 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 86.33 | |
| 3rkx_A | 323 | Biotin-[acetyl-COA-carboxylase] ligase; biotin pro | 85.12 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 84.01 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 83.89 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 82.22 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 80.55 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 80.12 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 80.07 |
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=451.82 Aligned_cols=417 Identities=18% Similarity=0.312 Sum_probs=330.0
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHH
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQA 86 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (470)
++-++|....|..+| ..||++| ||++|..+|++.++.+ .-+ ..++.+....+++.+..+.+..
T Consensus 8 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~s~~~~~~~~s~~~~~~~~~ 73 (448)
T 3aow_A 8 HHHSSGLVPRGSHMH--------EDVQLNIYVHSQEGIGMEENIKSMLG-DVE-----RFFSKKALEMRASEVRELLKLV 73 (448)
T ss_dssp ---------------------------------------------CTTS-CGG-----GGCCHHHHHCCCCHHHHHHHHH
T ss_pred cccccCcccCCcccc--------cccccccccccchhhhhhhccccccc-chH-----HHhhHHHhcCCCcHHHHHHHhc
Confidence 344677777777777 7899999 9999999999998755 321 1245566667777666654432
Q ss_pred HHHHhcCCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEec
Q 012124 87 TALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 161 (470)
Q Consensus 87 ~~~~~~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~ 161 (470)
.++++|+|+.|.|+.. +++.+.+++.+.+... ...|++..|..+||++|++++.+.+|++ ++++|++|+
T Consensus 74 -----~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~ 147 (448)
T 3aow_A 74 -----ETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITS 147 (448)
T ss_dssp -----HTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEES
T ss_pred -----cCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeC
Confidence 2457899999998755 5788999998888653 3689888999999999999998888977 889999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----C--CceEEE-Ec
Q 012124 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----E--KSRLLI-LC 234 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~--~~~~i~-l~ 234 (470)
|+++++++++++++++||+|++++|+|+++...++..|++++.+|++.+ ++|++.|+++++ + ++++|+ ++
T Consensus 148 G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~v~~~~ 224 (448)
T 3aow_A 148 GSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKVVYTVP 224 (448)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeEEEECC
Confidence 9999999999999999999999999999999999999999999998753 389999999987 5 789885 68
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
+||||||.++|.+++++|+++|++| |++||+||+|.++.|++...+++..++. .+++++++||||.++ +|+|+||++
T Consensus 225 ~~~NPtG~~~~~~~l~~i~~la~~~-~~~lI~De~y~~~~~~g~~~~~~~~~~~-~~~vi~~~S~SK~~~-~GlriG~v~ 301 (448)
T 3aow_A 225 TFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDN-EGRVIYLGTFSKILA-PGFRIGWMV 301 (448)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECSCTTCBCSSCCCCCTGGGCT-TSCEEEEEESTTTTC-GGGCCEEEE
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHhcCC-CCCEEEEccchhhcc-ccccEEEEE
Confidence 9999999999999999999999999 9999999999999987766677777764 578999999999999 999999999
Q ss_pred cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CC-CCeecCCCceEEEe
Q 012124 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LE-GVKMSEPQGAFYLF 392 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~-g~~~~~~~~g~~~~ 392 (470)
+++++++.+.......+++++.+.|.++.++|+.+.+ .++++++++.|+++++.+.+.|++ +| |+.+..|.+|+|+|
T Consensus 302 ~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~ 380 (448)
T 3aow_A 302 GDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIW 380 (448)
T ss_dssp ECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEE
T ss_pred eCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEE
Confidence 9999999998887777778899999999999987533 688999999999999999999987 67 68888889999999
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++|+.. +..+++++|+++ ||.+.||..|+. ++++||+++. +++++++++++|++++++..
T Consensus 381 v~~~~~~-----------~~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 381 VTLPDGI-----------DSKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp EECSTTC-----------CHHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCC-----------CHHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998643 678899999877 999999998853 5799999998 78999999999999987653
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=466.68 Aligned_cols=394 Identities=16% Similarity=0.214 Sum_probs=333.5
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCe
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSV 96 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (470)
|+||||+|+||++|+|||+| ||++|.+ |++++ +|+++.. .. . .+++
T Consensus 1 g~~lps~r~la~~l~vs~~tv~~a~~~l~~-~~~~~----~~~~~~~--------------------~~-----~-~~~~ 49 (430)
T 2x5f_A 1 GAMNPLAQSLNEQLQQSNATAFAMLSDLGQ-NMFYP----KGILSQS--------------------AE-----A-KSTT 49 (430)
T ss_dssp --CCHHHHHHHHHHHHHCHHHHHHCCHHHH-HCCCC----CHHHHHH--------------------HH-----T-TTCS
T ss_pred CCCChhhhhHHHHHHhhhhHHHHHHhhhhh-hccCc----hHHHHHH--------------------Hh-----c-CCCc
Confidence 89999999999999999999 9999998 88753 5655411 00 0 2467
Q ss_pred EEccCCCC-CCCChHHH--HHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCc---EEEecChHHHHHH
Q 012124 97 IRLAAGEP-DFDTPVLI--AEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ---ILVSNGAKQSILQ 169 (470)
Q Consensus 97 i~l~~g~~-~~~~~~~~--~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~---i~it~g~~~al~~ 169 (470)
|||+.|.| ++..++.+ .+++.+.+.. ....|++..|..+||+++++++.+.. +.+++++ |++|+|+++++.+
T Consensus 50 i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~ 128 (430)
T 2x5f_A 50 YNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSL 128 (430)
T ss_dssp EECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHH
T ss_pred EEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHH
Confidence 99999999 88776655 7776666544 46789888899999999999998764 6678889 9999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s 245 (470)
++++++++||+|++++|+|+++...++. .|++++.++++.++ +.+|++.|++++++ +++++++++||||||.++|
T Consensus 129 ~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~ 207 (430)
T 2x5f_A 129 VGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPT 207 (430)
T ss_dssp HHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCC
Confidence 9999999999999999999999999999 99999999997543 67999999999976 7899999999999999999
Q ss_pred HHHHHHHHHHHHh-----CCCEEEEEeccccccccCCCCccccc-ccCCCCCc---eEEEeccCcccccccceeeEEEc-
Q 012124 246 KNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWER---TLTVNGFSKAFAMTGWRLGYIAG- 315 (470)
Q Consensus 246 ~~~~~~l~~~~~~-----~~~~~iI~Dd~~~~~~~~~~~~~~~~-~~~~~~~~---~i~i~S~sK~~~~~G~r~G~~~~- 315 (470)
.+++++|+++|++ | |++||+||+|.++.+++....++. .++...++ +++++||||.+|++|+|+||+++
T Consensus 208 ~~~l~~i~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~ 286 (430)
T 2x5f_A 208 HKEVTTIVEAIKALANKGT-KVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFG 286 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTC-EEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEB
T ss_pred HHHHHHHHHHHHhhhhccC-CEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEe
Confidence 9999999999999 9 999999999999988765444554 55433467 89999999999889999999999
Q ss_pred --CHHHHHHHHHHhhh----ccCCCChHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHHHHHhc----cCCCCeecC
Q 012124 316 --PKHFVAACNKIQSQ----FTSGASSISQKAGVAALG-LGYAGGEVVSKMVKAFRERRDFLVKSFG----ELEGVKMSE 384 (470)
Q Consensus 316 --~~~~~~~l~~~~~~----~~~~~~~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~g~~~~~ 384 (470)
++++++.+...... ..++++.+.|.++.++|+ ++.+ .++++++++.++++++.+.+.|+ +. |+.+..
T Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~ 364 (430)
T 2x5f_A 287 TSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYD 364 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECC
T ss_pred cCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeC
Confidence 99999998876655 567899999999999998 7422 34455599999999999999998 55 788888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-cCHHHHHHHHHHHHHHHHh
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-~~~~~i~~~l~~l~~~l~~ 463 (470)
+.+|+|+|++++ .. +..++++.|++++||.+.|| .++++|++++ .+++++++++++|++++++
T Consensus 365 ~~~g~~~~~~~~-~~-----------~~~~~~~~l~~~~gi~v~~g----~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 365 FNSGYFMAIKVH-DV-----------DPEALRKHLIDKYSIGVIAL----NATDIRIAFSCVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CCBSSEEEEEES-SS-----------CHHHHHHHHHHHHCEECEEC----SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCC-CC-----------CHHHHHHHHHHhCCEEEecC----CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 899999999998 32 77889999887459999998 3579999999 5889999999999999987
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
++
T Consensus 429 ~~ 430 (430)
T 2x5f_A 429 LR 430 (430)
T ss_dssp HC
T ss_pred cC
Confidence 53
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-56 Score=438.68 Aligned_cols=377 Identities=43% Similarity=0.716 Sum_probs=335.1
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++...+++....+.....+....++++|+|+.|+|++++|+.+.+++.+.+......|++..|..+||+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 83 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR 83 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45566677777777777777777667788999999999988889999999998877677898888999999999999998
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+.+++++|++|+|+++++.+++.++++|||+|++++|+|+.+...++..|++++.+++++++++.+|++.|++++++
T Consensus 84 ~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 163 (385)
T 1b5p_A 84 ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163 (385)
T ss_dssp TTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred HhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC
Confidence 88988889999999999999999999999999999999999999999999999999999997656778999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.++|.+++++|+++|++| |++||+||+|+++.+++ ...++.++++ +++++++||||.+|++
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~-~~~~~~~~~~--~~~i~~~s~SK~~~~~ 239 (385)
T 1b5p_A 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEG-EHFSPGRVAP--EHTLTVNGAAKAFAMT 239 (385)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSS-CCCCGGGTCT--TTEEEEEESTTTTTCG
T ss_pred CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCCHHHcCC--CCEEEEEechhhcCCc
Confidence 899999999999999999999999999999999 99999999999998876 4556666654 7899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
|+|+||+++++++++.+...+.....+++.+.|.++.++|+. + .+++++.++.++++++.+.+.|+++ |+.+.
T Consensus 240 G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 315 (385)
T 1b5p_A 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAYRRRRDLLLEGLTAL-GLKAV 315 (385)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC
T ss_pred ccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHHHHHHHHHHC-CCeec
Confidence 999999999999999998887777778999999999999964 3 5678899999999999999999988 88888
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.|.+++|+|+.++.. + .+..++++.|. ++||.+.||..|+.++++|||++.+++++++++++|+++++
T Consensus 316 ~~~~~~~~~~~~~~~-~---------~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 316 RPSGAFYVLMDTSPI-A---------PDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp CCSBTTEEEEECTTT-C---------SSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred CCCeeEEEEEecCCC-C---------CCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 899999999998631 0 16788999888 55999999999987889999999989999999999987764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=422.82 Aligned_cols=383 Identities=46% Similarity=0.801 Sum_probs=337.0
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++...+++....+.....+....|+++|+|+.|.|++++|+.+.+++.+.+......|++..|..++|+++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 83 (388)
T 1j32_A 4 AARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRD 83 (388)
T ss_dssp CHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 34455555555556666666666678899999999998888899999999998776778988889999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|.++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++.+.++++.+|++.|+++++++
T Consensus 84 ~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 84 NGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp HCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred cCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 89888889999999999999999999999999999999999999999999999999999976556779999999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMT 306 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~ 306 (470)
+++|++++|+||||.++|.+++++|+++|++| |++||+||+|+++.+++....++..++.. .++++++.||||.+|++
T Consensus 164 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 242 (388)
T 1j32_A 164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc
Confidence 99999999999999999999999999999999 99999999999998876555566666431 46899999999999889
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++.+.|.++.++|+. ..++++++++.++++++++.+.|++++|+.+..+.
T Consensus 243 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 319 (388)
T 1j32_A 243 GWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD 319 (388)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC
T ss_pred ccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC
Confidence 999999999999999998887777788999999999999985 36789999999999999999999998899888888
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+++++|++++.. + .+..++++.|++++||.+.||..|+.++++|++++.+++++++++++|+++++++
T Consensus 320 ~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKT-G---------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGG-T---------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC-C---------CCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 999999988641 0 1678899988875699999999888789999999989999999999999998765
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=416.04 Aligned_cols=374 Identities=26% Similarity=0.424 Sum_probs=326.1
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcC
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 149 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g 149 (470)
++..+.++....+.+.+.+...+|+++|+|+.|.+++++|+.+++++.+++.+....|++..|..++|+++++++.+.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g 86 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYG 86 (391)
T ss_dssp STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHC
T ss_pred hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhC
Confidence 56677777888888888888889999999999999998899999999999877678898889999999999999999999
Q ss_pred CCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCce
Q 012124 150 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 229 (470)
Q Consensus 150 ~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 229 (470)
+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|+++ +++
T Consensus 87 ~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~---~~~ 163 (391)
T 3h14_A 87 VDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLA 163 (391)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---CCS
T ss_pred CCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---CCe
Confidence 98999999999999999999999999999999999999999999999999999999998777788999999987 789
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccce
Q 012124 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 230 ~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
+|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++..+ .+++++++||||.+|++|+|
T Consensus 164 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~---~~~~i~~~s~sK~~g~~G~r 238 (391)
T 3h14_A 164 GLMVASPANPTGTMLDHAAMGALIEAAQAQ-GASFISDEIYHGIEYEAK-AVTALEL---TDECYVINSFSKYFSMTGWR 238 (391)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC-CCCGGGT---CSSSEEEEESSSTTCCTTSC
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEECcchhcccCCC-CcChhhc---CCCEEEEEechhccCCccce
Confidence 999999999999999999999999999999 999999999999888764 2333333 47899999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceE
Q 012124 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 389 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~ 389 (470)
+||+++++++++.+........++++.+.|.++.++++. .+++++.++.++++++.+.+.|++++...+..+.+++
T Consensus 239 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 314 (391)
T 3h14_A 239 VGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAF 314 (391)
T ss_dssp CEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTT
T ss_pred eEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeE
Confidence 999999999999999888888888999999999888872 7889999999999999999999988333446788889
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
++|++++... .+..++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++++++..
T Consensus 315 ~~~~~~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 315 YVYADVSDLT----------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp EEEEECTTTC----------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCccC----------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 9999987521 16788999988877999999999976 579999999999999999999999998754
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=414.13 Aligned_cols=380 Identities=42% Similarity=0.666 Sum_probs=330.3
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
+.+...++++....+.+... ..+++|+|+.|.+++++++.+.+++.+.+......|++..|..++|+++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 4 SDRLELVSASEIRKLFDIAA----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHHHHSCCCHHHHHHHHHH----TCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHhHhCChhHHHHHHHHHh----hhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 44555666666665554433 22578999999998888899999999998876678988889999999999999988
Q ss_pred cCCCCCCCc-EEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 148 NGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 148 ~g~~~~~~~-i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+|+++++++ |++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|++++++
T Consensus 80 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 159 (389)
T 1gd9_A 80 NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD 159 (389)
T ss_dssp HCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred hCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence 898788899 9999999999999999999999999999999999999999999999999997655677999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..+++..+++++++||||.+|++
T Consensus 160 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 238 (389)
T 1gd9_A 160 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT 238 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG
T ss_pred CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCc
Confidence 899999999999999999999999999999999 9999999999998887654556666654357899999999999889
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++.+.|.++.++|+.+.. +++++++++.++++++.+.+.|+++ |+++..+.
T Consensus 239 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 316 (389)
T 1gd9_A 239 GWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPK 316 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCC
T ss_pred ccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC
Confidence 999999999999999998887777788999999999999986311 2388999999999999999999988 88888888
Q ss_pred ceEEEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+|+++|++++. .. +..++++.|++++||.+.||..|+. ++++|++++.+++++++++++|++++++
T Consensus 317 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 317 GAFYIFPRIRDTGL-----------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp BTTEECCBCGGGTC-----------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeccCCCC-----------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999999874 21 6788999888566999999998874 5799999999999999999999999987
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
.+
T Consensus 386 ~~ 387 (389)
T 1gd9_A 386 RK 387 (389)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=418.37 Aligned_cols=387 Identities=26% Similarity=0.409 Sum_probs=323.3
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 145 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~ 145 (470)
++.++..++++....+.........+|+++|||+.|.|++.+++.+.+++.+++... ...|++..|..+||+++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~ 89 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYR 89 (412)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 445556666666666666666566778899999999998888899999998887653 5679888999999999999999
Q ss_pred HHcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc
Q 012124 146 EENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 146 ~~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
+.+|+++++ ++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|++++
T Consensus 90 ~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i 169 (412)
T 2x5d_A 90 DRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES 169 (412)
T ss_dssp HHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTE
T ss_pred HHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhc
Confidence 888987888 7999999999999999999999999999999999999999999999999999976546668999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...+++++++||||.+|
T Consensus 170 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 248 (412)
T 2x5d_A 170 IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN 248 (412)
T ss_dssp ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS
T ss_pred ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccC
Confidence 88899999999999999999999999999999999 99999999999998866555666666543578999999999998
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||+++++++++.+........++++.+.|.++.++|+. .+++++++++.++++++.+.+.|+++ |+.+..
T Consensus 249 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 324 (412)
T 2x5d_A 249 MAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIARQYQQRRDVLVKGLREA-GWMVEN 324 (412)
T ss_dssp CTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCC
T ss_pred CcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 89999999999999999998887777788999999999999986 36789999999999999999999988 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+.+|+|+|+++|..++ ..+..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 325 ~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 325 PKASMYVWAKIPEPYA--------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp CSBSSEEEEECCTTTG--------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCCccC--------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 8899999999974310 004678888887766999999998863 579999999999999999999999998
Q ss_pred hhCC
Q 012124 463 TLRP 466 (470)
Q Consensus 463 ~~~~ 466 (470)
++..
T Consensus 397 ~~~~ 400 (412)
T 2x5d_A 397 ADGL 400 (412)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 7653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-53 Score=426.35 Aligned_cols=381 Identities=23% Similarity=0.426 Sum_probs=322.7
Q ss_pred cCCchHHHHHHHHHHH----HhcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 74 VKPSKTVAITDQATAL----AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~----~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
..++....+.+..... ...++++|+|+.|.|++++|+.+.+++.+++.. ....|++..|..+||+++++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 112 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIY 112 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4455555555444333 225678999999999998899999999998865 45789888899999999999999888
Q ss_pred CCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC----------CCccCHH
Q 012124 149 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE----------NFLLDPK 218 (470)
Q Consensus 149 g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~~ 218 (470)
|..+++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+++++++ ++.+|++
T Consensus 113 g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 113 NTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp TSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred CCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 888888999999999999999999999999999999999999999999999999999987543 5789999
Q ss_pred hHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc-CCCCCceEEEe
Q 012124 219 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVN 297 (470)
Q Consensus 219 ~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~ 297 (470)
.|++++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++ ...++..+ .+..+++++++
T Consensus 193 ~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 193 QFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEE
T ss_pred HHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEe
Confidence 99999988999999999999999999999999999999999 99999999999998876 34455555 22257899999
Q ss_pred ccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 298 GFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
||||.++++|+|+||+++ ++++++.+........++++++.|.++.++|+.+.. +++++++++.++++++++.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999999 999999998877777788999999999999986422 577899999999999999999998
Q ss_pred CCCCeecCCCceEEEeeeccCccCCccc-----CCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEee
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAE-----GFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYA 444 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls~~ 444 (470)
+ |+.+..|.+|+|+|++++... .... ..+...+..+++++|++++||.+.||..|+. ++++||+++
T Consensus 350 ~-g~~~~~~~~g~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~ 427 (447)
T 3b46_A 350 L-GLPYTAPEGTYFVLVDFSKVK-IPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC 427 (447)
T ss_dssp H-TCCEECCSBSSEEEEECTTCC-CCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC
T ss_pred C-CCeecCCCeeEEEEEeccccc-CccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe
Confidence 8 888888999999999987520 0000 0000014568888888767999999998864 579999999
Q ss_pred cCHHHHHHHHHHHHH
Q 012124 445 ASLTTLQAAVERIKK 459 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~ 459 (470)
.++++|++++++|++
T Consensus 428 ~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 428 KDDAYLENAVERLKL 442 (447)
T ss_dssp SCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999987
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=417.56 Aligned_cols=389 Identities=28% Similarity=0.509 Sum_probs=334.7
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCC--CCCCCCcCcHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF--TRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l 144 (470)
++.++..++++....+.+.. .++++|+|+.|.|++++|+.+.+++.+++.... ..|++..|..++|+++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~ 80 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFF 80 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHH-----HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHh-----hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHH
Confidence 45566667777666554432 345789999999999999999999999988753 78988889999999999999
Q ss_pred HHHcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC----C------CCC
Q 012124 145 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----S------ENF 213 (470)
Q Consensus 145 ~~~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~------~~~ 213 (470)
.+.+|+++++ ++|++|+|+++++..++..++++||+|++++|+|+++...++..|.+++.++++. + +++
T Consensus 81 ~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~ 160 (422)
T 3fvs_A 81 GELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNW 160 (422)
T ss_dssp HHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGS
T ss_pred HHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCC
Confidence 9999998888 7999999999999999999999999999999999999999999999999999975 2 356
Q ss_pred ccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCce
Q 012124 214 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 293 (470)
Q Consensus 214 ~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
.+|++.|++++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...+++
T Consensus 161 ~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (422)
T 3fvs_A 161 QLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 239 (422)
T ss_dssp BCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred CCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCCCCCChhhcccccCcE
Confidence 7899999999998999999999999999999999999999999999 999999999999999877677777776556899
Q ss_pred EEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHH
Q 012124 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRD 368 (470)
Q Consensus 294 i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~ 368 (470)
++++||||.+|++|+|+||+++++++++.+........++++++.|.++..+++. +.. .++++++++.++++++
T Consensus 240 i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (422)
T 3fvs_A 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRD 318 (422)
T ss_dssp EEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHH
T ss_pred EEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777888999999999999974 333 6789999999999999
Q ss_pred HHHHHhccCCCCeecCCCceEEEeeeccCccCCcc--cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcE
Q 012124 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA--EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCI 439 (470)
Q Consensus 369 ~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~i 439 (470)
.+.+.|+++ |+.+..|.+++|+|++++....... ..........++++.|++++||.+.||..|+. .+++
T Consensus 319 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~i 397 (422)
T 3fvs_A 319 HMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYI 397 (422)
T ss_dssp HHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEE
T ss_pred HHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeE
Confidence 999999998 8998889999999998865210000 00000000568888888777999999998853 5899
Q ss_pred EEEeecCHHHHHHHHHHHHHHHHh
Q 012124 440 RISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 440 Rls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
|++++.+++++++++++|++++++
T Consensus 398 Ris~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 398 RFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-52 Score=410.67 Aligned_cols=373 Identities=38% Similarity=0.667 Sum_probs=329.8
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++...+++.+..+.....+....|+++|+|+.|.|++++++.+.+++.+.+......|++..|..+||+++++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~ 94 (389)
T 1o4s_A 15 SRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGER 94 (389)
T ss_dssp CHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 44566677777777777777766678899999999998888899999999998766678988889999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|+++++++
T Consensus 95 ~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (389)
T 1o4s_A 95 YKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 174 (389)
T ss_dssp HTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred hCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC
Confidence 89888899999999999999999999999999999999999999999999999999999976556789999999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
+++|++++|+||||.++|.+++++|+++|+++ |++||+||+|.++.+++ ...++..++...+++++++||||.+|++|
T Consensus 175 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 252 (389)
T 1o4s_A 175 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSMTG 252 (389)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTCGG
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCCcc
Confidence 99999999999999999999999999999999 99999999999988765 33455555433578999999999998899
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
+|+||+++++++++.+........++++.+.|.++.++|+.+ ++++++.++++++.+.+.|+++ |+.+..+.+
T Consensus 253 ~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 325 (389)
T 1o4s_A 253 WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEG 325 (389)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSB
T ss_pred cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCc
Confidence 999999999999999988877777788999999999998763 5677888999999999999988 888888889
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
|+++|++++ . +..++.+.|++++||.+.||..|+.++++|++++.+++++++++++|+++++
T Consensus 326 ~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 326 AFYLFFKVR-G------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SSEEEEECS-S------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCC-C------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 999999987 2 6788999887555999999998887789999999999999999999999875
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=409.25 Aligned_cols=372 Identities=25% Similarity=0.430 Sum_probs=317.4
Q ss_pred cccccccc--CCchHHHHHHHHHHHHh--cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC----CCCCCCCcCcHHHHH
Q 012124 67 LSPRVNAV--KPSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTPNAGTLELRS 138 (470)
Q Consensus 67 ~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y~~~~g~~~lr~ 138 (470)
++.+...+ .++...++.....+... .++++|+|+.|.|++++++.+.+++.+.+.+. ...|++..|..+||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~ 83 (398)
T 3ele_A 4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRA 83 (398)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHH
T ss_pred hhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHH
Confidence 45556665 45666666665555443 34678999999999888999999999998764 578988999999999
Q ss_pred HHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 139 AICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 139 ~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
++++++.+.+|+++++++|++|+|+++++..++++++++| |+|++++|+|+++...++..|++++.+|++. +++.+|+
T Consensus 84 ~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~ 162 (398)
T 3ele_A 84 AIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQIDF 162 (398)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTSSCCH
T ss_pred HHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCCcCCH
Confidence 9999999999988899999999999999999999999999 9999999999999999999999999999975 3678999
Q ss_pred HhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 218 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~------~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
|.|+++++++++++++++||||||.+++.+++++|+++|++ | |++||+||+|.++.+++...+.+... .+
T Consensus 163 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~---~~ 238 (398)
T 3ele_A 163 DALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR-PIFIIADEPYREIVYDGIKVPFVTKY---YD 238 (398)
T ss_dssp HHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECTTTTCBCTTCCCCCGGGT---CS
T ss_pred HHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC-CeEEEEeccccccccCCCCcCChHhh---cC
Confidence 99999999899999999999999999999999999999999 9 99999999999998876443333322 47
Q ss_pred ceEEEeccCcccccccceeeEEEcCHHH------HHHHHHHhhh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHF------VAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~~~~~------~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
++++++||||.+|++|+|+||+++++++ .+.+...... ...+++.+.|.++..+++.+. .++.++
T Consensus 239 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~ 310 (398)
T 3ele_A 239 NTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--------DINAYK 310 (398)
T ss_dssp SEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC--------CHHHHH
T ss_pred CeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH--------HHHHHH
Confidence 8999999999999999999999998874 3344443333 256678899999888887532 356778
Q ss_pred HHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012124 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~ 444 (470)
++++++.+.|+++ |+.+..+.+++|+|++++.. +..++++.|. ++||.+.||..|+.++++|++++
T Consensus 311 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~ 376 (398)
T 3ele_A 311 ENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED------------DSNAFCEKAK-EEDVLIVAADGFGCPGWVRISYC 376 (398)
T ss_dssp HHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS------------CHHHHHHHHH-TTTEECEESGGGTCTTEEEEECC
T ss_pred HHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC------------CHHHHHHHHH-HCCEEEeCccccCCCCeEEEEec
Confidence 8889999999887 88888899999999999854 6788888775 55999999999988899999998
Q ss_pred cCHHHHHHHHHHHHHHHHhhC
Q 012124 445 ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+++++++++++|++++++++
T Consensus 377 ~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 377 VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999998875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=415.14 Aligned_cols=377 Identities=23% Similarity=0.379 Sum_probs=321.5
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+.++..++++....+...... ..|+++|+|+.|.+++.+++.+++++.+++... ...|++..|..+||+++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 100 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE--HGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQR 100 (404)
T ss_dssp CHHHHTSCCCTTC-------C--CCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh--cCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344555555544433322221 346678999999998888889999998887542 45787778999999999999998
Q ss_pred HcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 147 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 147 ~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+|.++++ ++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++. +++.+|++.|+++++
T Consensus 101 ~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~ 179 (404)
T 2o1b_A 101 QYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQII 179 (404)
T ss_dssp HHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHH
T ss_pred HhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhc
Confidence 88988776 8999999999999999999999999999999999999999999999999999875 567789999999987
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++++|++++|+||||.++|.+++++|+++|+++ |++||+||+|.++.+++ ...++..++...+++++++||||.+|+
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNM 257 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTS-SCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccC
Confidence 7889999999999999999999999999999999 99999999999988865 344555554334789999999999988
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+........++++.+.|.++.++|+.+ +++++++++.++++++.+.+.|+++ |+.+..+
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 333 (404)
T 2o1b_A 258 SGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHA 333 (404)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred chhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCC
Confidence 99999999999999999988877777889999999999999863 7889999999999999999999988 8888888
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.+|+|+|++++... +..+++++|++++||.+.||..|+. ++++||+++.+++++++++++|++++++
T Consensus 334 ~~g~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 334 KGGIYVWLETPPGY-----------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CBSSEEEEECCTTC-----------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred CcceEEEEeCCCCC-----------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 89999999997542 6778998888666999999998874 6799999999888999999999998876
Q ss_pred h
Q 012124 464 L 464 (470)
Q Consensus 464 ~ 464 (470)
+
T Consensus 403 ~ 403 (404)
T 2o1b_A 403 Y 403 (404)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-52 Score=411.45 Aligned_cols=371 Identities=22% Similarity=0.366 Sum_probs=321.0
Q ss_pred cccccCCchHHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHc
Q 012124 70 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 148 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~ 148 (470)
++..+++++...+........ .+|+++|+|+.|+|++++|+.+.+++.+.+. ....|++..|..++|+++++++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~ 83 (396)
T 3jtx_A 5 LLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKRRY 83 (396)
T ss_dssp HHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHHHT
T ss_pred hhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHHhc
Confidence 455566666665544433322 3577899999999999999999999998875 46789888999999999999999988
Q ss_pred CCC-CCCC-cEEEecChHHHHHHHHHHhcCCC-----CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 149 GLS-YTPD-QILVSNGAKQSILQAVLAVCSPG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 149 g~~-~~~~-~i~it~g~~~al~~~~~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
|++ ++++ +|++|+|+++++.+++++++++| |+|++++|+|+++...++..|++++.++++ ++++.+|++.|+
T Consensus 84 g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g~~~d~~~l~ 162 (396)
T 3jtx_A 84 DGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSIS 162 (396)
T ss_dssp TTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTTCCCCGGGSC
T ss_pred CCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCCCccCHHHHH
Confidence 987 7888 99999999999999999999997 799999999999999999999999999994 456778999999
Q ss_pred hhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc----cCCCCCceEEEe
Q 012124 222 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS----LPGMWERTLTVN 297 (470)
Q Consensus 222 ~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~ 297 (470)
+++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....+... +....+++++++
T Consensus 163 ~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 241 (396)
T 3jtx_A 163 EEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFT 241 (396)
T ss_dssp HHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEE
T ss_pred HhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEe
Confidence 99988999999999999999999999999999999999 9999999999998887632322221 222358899999
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
||||.++++|+|+||+++++++++.+.......+++++.+.|.++.++++. .+++++.++.++++++.+.+.|+++
T Consensus 242 s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 242 SLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp ESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999889999999999999999999888877888999999999999985 6789999999999999999999876
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--------CCcEEEEeecCHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------DTCIRISYAASLTT 449 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------~~~iRls~~~~~~~ 449 (470)
+.+..+.+|+|+|++++.. +..++++.|++++||.+.||..|+. ++++||+++.++++
T Consensus 318 --~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~ 383 (396)
T 3jtx_A 318 --FDVKLPDASFYIWLKVPDG------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVAT 383 (396)
T ss_dssp --SCCCCCSSSSEEEEECTTS------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHH
T ss_pred --CCccCCCeeEEEEEECCCC------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHH
Confidence 4556788899999999863 6788999887777999999998874 47999999999999
Q ss_pred HHHHHHHHHHHH
Q 012124 450 LQAAVERIKKGL 461 (470)
Q Consensus 450 i~~~l~~l~~~l 461 (470)
+++++++|++++
T Consensus 384 i~~~l~~l~~~l 395 (396)
T 3jtx_A 384 CVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=410.48 Aligned_cols=382 Identities=31% Similarity=0.521 Sum_probs=327.3
Q ss_pred CccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHH
Q 012124 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~ 142 (470)
..++++..+.++....+. ...+...+|+++|+|+.|.| ++++++.+.+++.+.+......|++..|..++|+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~ 89 (406)
T 1xi9_A 11 RASKRALSVEYAIRDVVL-PARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE 89 (406)
T ss_dssp CCCHHHHTCCC--------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHH
T ss_pred hHHHHHhcCChhHHHHHH-HHHHHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH
Confidence 345667777777666666 66677777889999999999 77778999999999887666689888899999999999
Q ss_pred HHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++.+.+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|++
T Consensus 90 ~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 169 (406)
T 1xi9_A 90 REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRK 169 (406)
T ss_dssp HHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHH
T ss_pred HHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHH
Confidence 99998898889999999999999999999999999999999999999999999999999999998764567799999999
Q ss_pred hccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc-eEEEeccCc
Q 012124 223 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSK 301 (470)
Q Consensus 223 ~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~sK 301 (470)
++++++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+++ ...++..++ .++ +++++||||
T Consensus 170 ~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~-~~~~~~~~~--~~~~~i~~~s~sK 245 (406)
T 1xi9_A 170 KITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEG-EHISPGSLT--KDVPVIVMNGLSK 245 (406)
T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSS-CCCCHHHHC--SSSCEEEEEESTT
T ss_pred hhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEcCccccccCC-CCCCHHHcC--CCceEEEEecccc
Confidence 9988899999999999999999999999999999999 99999999999988743 334555554 477 899999999
Q ss_pred ccccccceeeEEE--cCH----HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 302 AFAMTGWRLGYIA--GPK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 302 ~~~~~G~r~G~~~--~~~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
.++++|+|+||++ +++ ++++.+....... ++++++.|.++.++|+.+ .++++++++.++++++++.+.|+
T Consensus 246 ~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~ 321 (406)
T 1xi9_A 246 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLN 321 (406)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988999999999 999 9999998776655 778999999999999752 45688999999999999999999
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAA 453 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~ 453 (470)
+++|+.+..+.+|+++|++++...+ .+..++++.|++++||.+.||..|+. ++++|++++.++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~ 392 (406)
T 1xi9_A 322 EIPGISTTKPQGAFYIFPKIEVGPW---------KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEA 392 (406)
T ss_dssp TSTTEECCCCCBSSEECCEECSCSC---------SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHH
T ss_pred hCCCCeeecCCeeEEEEEecCccCC---------CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHH
Confidence 9888888888899999998874100 16788988887556999999998875 689999999899999999
Q ss_pred HHHHHHHHHhhC
Q 012124 454 VERIKKGLLTLR 465 (470)
Q Consensus 454 l~~l~~~l~~~~ 465 (470)
+++|+++++++.
T Consensus 393 ~~~l~~~l~~~~ 404 (406)
T 1xi9_A 393 MDRFEKFMKERL 404 (406)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=405.85 Aligned_cols=364 Identities=25% Similarity=0.405 Sum_probs=317.6
Q ss_pred chHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC
Q 012124 77 SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155 (470)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~ 155 (470)
.....+.........+|+++|||+.|.+++++++.+.+++.+++... ...|++..|..+||+++++++.+.+|.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~ 87 (376)
T 2dou_A 8 SVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPR 87 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTT
T ss_pred chHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 44455555555555678899999999998888899999999987643 56787667899999999999998889887777
Q ss_pred -cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEc
Q 012124 156 -QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC 234 (470)
Q Consensus 156 -~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~ 234 (470)
+|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|+ ++++.+|++.+++++++++++|+++
T Consensus 88 ~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~~v~l~ 165 (376)
T 2dou_A 88 REALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREAKVLLLN 165 (376)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHEEEEEEC
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCceEEEEC
Confidence 9999999999999999999999999999999999999999999999999998 4567789999999887788999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
+||||||.++|.+++++|+++|++| |++||+||+|.++.+++. ..++..+.+..+++++++||||.+|++|+|+||++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 243 (376)
T 2dou_A 166 YPNNPTGAVADWGYFEEALGLARKH-GLWLIHDNPYVDQVYEGE-APSPLALPGAKERVVELFSLSKSYNLAGFRLGFAL 243 (376)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBSSSC-CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEE
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCC-CCChhhcCCCCCcEEEEecchhhcCChhheeEEEe
Confidence 9999999999999999999999999 999999999999888652 33444443335789999999999988999999999
Q ss_pred cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeee
Q 012124 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 394 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~ 394 (470)
+++++++.+.......+++++.+.|.++.++|+. .++++++.++.++++++.+.+.|+++ +.+..+.+|+|+|++
T Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~ 318 (376)
T 2dou_A 244 GSEEALARLERVKGVIDFNQYAGVLRMGVEALKT---PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGR 318 (376)
T ss_dssp ECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEE
T ss_pred cCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEE
Confidence 9999999998887777778899999999999986 37889999999999999999999887 777778899999999
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+++.. +..++++.|+++ ||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 319 ~~~~~-----------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 319 LPEGV-----------DDLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp CCTTC-----------CHHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CCCCC-----------CHHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 98542 678899998877 999999998874 57999999989999999999998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-51 Score=403.28 Aligned_cols=372 Identities=28% Similarity=0.486 Sum_probs=320.6
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
+.++..........+..... ..++|+|+.|.+++++++.+.+++.+.+......|++..|..+||+++++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~ 83 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALAQ-----QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERL 83 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHHH-----HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHHh-----cCCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHH
Confidence 44555555554444332221 1467999999998888899999999998776678988889999999999999988
Q ss_pred cCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 148 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 148 ~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+|.+++++ +|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++++.+ ++.+|++.|++++++
T Consensus 84 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~~ 162 (386)
T 1u08_A 84 YGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLSE 162 (386)
T ss_dssp HSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCCT
T ss_pred hCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhcc
Confidence 89888898 9999999999999999999999999999999999999999999999999998653 467999999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++....++..++...+++++++||||.++++
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 241 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT 241 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCG
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCc
Confidence 999999999999999999999999999999999 9999999999999887655556655532257899999999999989
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++.+.|.++..+|+.+ +++++++++.++++++.+.+.|+++ |+.+..+.
T Consensus 242 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 317 (386)
T 1u08_A 242 GWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNES-RLEILPCE 317 (386)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCC
T ss_pred ccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC
Confidence 9999999999999999988776667788999999999999863 6789999999999999999999988 89888888
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+|+|+|+++++.. ..+..++++.|++++||.+.||..|+ .++++|++++.++++|++++++|++
T Consensus 318 ~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 318 GTYFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp BSSEEEEECTTTC---------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 8999999997530 01678888888866799999998885 3579999999999999999999864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=414.01 Aligned_cols=363 Identities=23% Similarity=0.399 Sum_probs=319.0
Q ss_pred hcCCCeEEccCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 91 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~----~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
.+++++|+|+.|.|+ +++++.+++++.+.+... ...|.+..|..++|+++++++.+. +.++++++|++|+|+++
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~ 129 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQ 129 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHH
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChHHEEEecCcHH
Confidence 356688999999986 466899999999988764 468988999999999999999765 77788999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 166 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 166 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++.+++..++++||+|++++|+|+++...++..|++++.+++++++++.+|++.|+++++++++++++++||||||.+++
T Consensus 130 al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~ 209 (427)
T 3dyd_A 130 AIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFS 209 (427)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999987777889999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-------HH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-------KH 318 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-------~~ 318 (470)
.+++++|+++|+++ |+++|+||+|+++.+++....++..+.. ..++++++||||.|+++|+|+||++++ ++
T Consensus 210 ~~~l~~i~~~~~~~-~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~ 287 (427)
T 3dyd_A 210 KRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNE 287 (427)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHH
T ss_pred HHHHHHHHHHHHHC-CCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEeeccccCCCcCcceEEEEecCcchhhHHH
Confidence 99999999999999 9999999999999988766667766665 467899999999998899999999987 57
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 319 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
+++.+...... .++++.+.|.++.++|+.. ..+++++++++++++++.+.+.|+++||+.+..|.+|+|+|+.++..
T Consensus 288 i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~ 364 (427)
T 3dyd_A 288 IRDGLVKLSQR-ILGPCTIVQGALKSILCRT--PGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEME 364 (427)
T ss_dssp HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGG
T ss_pred HHHHHHHHHhc-cCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHh
Confidence 88777766543 5679999999999999852 26788999999999999999999999899988899999999988632
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
. .....+..+++++|++++||.+.||..|+.++++|++++.+++++++++++|++++++++
T Consensus 365 ~------~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 365 H------FPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp G------CTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred h------cCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 0 000116778998888667999999999988999999999899999999999999998765
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-51 Score=407.74 Aligned_cols=383 Identities=31% Similarity=0.519 Sum_probs=325.6
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++++...+++.....+.... ...++|+|+.|.+++++++.+.+++.+++.+....|++..|..+||+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 77 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALA-----TRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRR 77 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHH-----HTTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHh-----hcCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 34556666666554443322 2345799999999888889999999999877667898888999999999999998
Q ss_pred HcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhc
Q 012124 147 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKL 224 (470)
Q Consensus 147 ~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l 224 (470)
.+|.+++++ +|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.+ +++.+|++.|++++
T Consensus 78 ~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 157 (411)
T 2o0r_A 78 HFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAV 157 (411)
T ss_dssp HHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHC
T ss_pred HcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhh
Confidence 889888888 9999999999999999999999999999999999999999999999999998754 34679999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...++++++.||||.+|
T Consensus 158 ~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 158 TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN 236 (411)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC
Confidence 88999999999999999999999999999999999 99999999999998876555666666544578999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||+++++++++.+........++.+++.|.++..+|+. ..++++++++.++++++++.+.|+++ |+.+..
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 312 (411)
T 2o0r_A 237 CTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHD 312 (411)
T ss_dssp CTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECC
T ss_pred CccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecC
Confidence 89999999999999999998877766777888999999999986 37789999999999999999999988 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-------------CCCcEEEEeecCHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-------------DDTCIRISYAASLTTLQ 451 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-------------~~~~iRls~~~~~~~i~ 451 (470)
+.+|+|+|++++... ..+..+++++|++++||.+.||..|. .++++||+++.++++++
T Consensus 313 ~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~ 383 (411)
T 2o0r_A 313 SYGTYFLCADPRPLG---------YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLD 383 (411)
T ss_dssp CCBSSEEEEECGGGT---------CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHH
T ss_pred CCeeEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHH
Confidence 889999999997520 01577888888766699999998883 24689999988999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 012124 452 AAVERIKKGLLTLRPGV 468 (470)
Q Consensus 452 ~~l~~l~~~l~~~~~~~ 468 (470)
+++++|++++++.+...
T Consensus 384 ~~~~~l~~~~~~~~~~~ 400 (411)
T 2o0r_A 384 EAIRRLSVLAERPATGV 400 (411)
T ss_dssp HHHHHHGGGGC------
T ss_pred HHHHHHHHHHhccCcCC
Confidence 99999999887766543
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=406.77 Aligned_cols=366 Identities=25% Similarity=0.470 Sum_probs=317.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~ 170 (470)
++|+|+.|.+++++++.+.+++.+++.. ....|++..|..+||+++++++.+.+|.+++++ +|++|+|+++++.++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 117 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 117 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHH
Confidence 6799999999888889999999999876 356898888999999999999998889878888 999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC--------CCccCHHhHhhhccCCceEEEEcCCCCCccc
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------NFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~ 242 (470)
+++++++||+|++++|+|+++...++..|++++.+|++.++ ++.+|++.|++++++++++|++++||||||.
T Consensus 118 ~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~ 197 (429)
T 1yiz_A 118 IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGK 197 (429)
T ss_dssp HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999997643 5679999999999889999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
++|.+++++|+++|++| |++||+||+|.++.+++....++..++...++++++.||||.+|++|+|+||+++++++++.
T Consensus 198 ~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 276 (429)
T 1yiz_A 198 VMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKN 276 (429)
T ss_dssp CCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc-CcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHH
Confidence 99999999999999999 99999999999998876655666666434678999999999998899999999999999999
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 323 CNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 323 l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
+........++.+++.|.++.++|+. +.. +++++++++.++++++.+.+.|+++ |+.+..+.+|+|+|+++++
T Consensus 277 l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~ 354 (429)
T 1yiz_A 277 LQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSS 354 (429)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEEECCS
T ss_pred HHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEEccc
Confidence 98877767788999999999999987 654 7789999999999999999999988 8888888889999999975
Q ss_pred ccCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 398 YYGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 398 ~~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.... .........+..+++++|++++||.+.||..|+. ++++||+++.++++|++++++|++++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 355 LDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKGS 428 (429)
T ss_dssp SCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSCC
T ss_pred ccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhccC
Confidence 3000 0000000014567888887667999999988863 5799999999999999999999988653
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-51 Score=409.61 Aligned_cols=375 Identities=20% Similarity=0.290 Sum_probs=311.2
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHH--HHHHH---------HHHHHcCCCCCCCCcCcHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--IAEAG---------INAIREGFTRYTPNAGTLE 135 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~--~~~a~---------~~~~~~~~~~y~~~~g~~~ 135 (470)
++.++..++++.+..+.+.... .++++|+|+.|.|+..+++. +..++ .+... ...+|++..|.++
T Consensus 7 ~s~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~ 82 (425)
T 2r2n_A 7 ITAASAARNPSPIRTMTDILSR---GPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMK-RALQYSPSAGIPE 82 (425)
T ss_dssp SCHHHHTCCCCSGGGHHHHHHH---SCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHH-HHTSCCCTTCCHH
T ss_pred HHHHHhcCCCchHHHHHHHhhc---CCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchh-hhcCCCCCCCCHH
Confidence 4556667777777666554432 23578999999998655321 10000 11111 1357999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-------CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 136 LRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 136 lr~~ia~~l~~~~g~~~~-------~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
||++|++++.+.+|++++ +++|++|+|+++++.++++++++|||+|++++|+|+++...++..|++++.+|++
T Consensus 83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 162 (425)
T 2r2n_A 83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVASD 162 (425)
T ss_dssp HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECEE
T ss_pred HHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcC
Confidence 999999999998898764 3799999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCccCHHhHhhhcc------------CCceEEEE-cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccccc
Q 012124 209 ISENFLLDPKVLESKLT------------EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~------------~~~~~i~l-~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~ 275 (470)
.+ ++|++.|+++++ +++++|++ ++||||||.++|.+++++|+++|++| |++||+||+|+++.|
T Consensus 163 ~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~-~~~li~De~~~~~~~ 238 (425)
T 2r2n_A 163 ES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPYYFLQF 238 (425)
T ss_dssp TT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBS
T ss_pred CC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCcccccC
Confidence 43 489999999886 36788876 78999999999999999999999999 999999999999999
Q ss_pred CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc---CCCC
Q 012124 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL---GYAG 352 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~ 352 (470)
++....++..++. .+++++++||||.++ +|+|+||+++++++++.+........++++.+.|.++.++|+. +.+
T Consensus 239 ~g~~~~~~~~~~~-~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~- 315 (425)
T 2r2n_A 239 NKFRVPTFLSMDV-DGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGF- 315 (425)
T ss_dssp SSSCCCCTGGGCT-TSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCCCCccccCC-CCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchH-
Confidence 8766677777764 578999999999998 9999999999999999999888777788999999999999975 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcc-CCCC-eecCCCceEEEeeeccCccCCcccCCCCCCCHHH-HHHHHHHcCCEEEEC
Q 012124 353 GEVVSKMVKAFRERRDFLVKSFGE-LEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES-LCRYLLDKAQVALVP 429 (470)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~L~~-~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L~~~~gI~v~p 429 (470)
.+|++++++.|+++++.+.+.|++ ++|+ .+..|.+|+|+|+++++.. +..+ +.+.|. ++||.+.|
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~-----------~~~~~~~~~l~-~~gv~v~p 383 (425)
T 2r2n_A 316 MAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIN-----------DVKELIEEKAV-KMGVLMLP 383 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCS-----------CCHHHHHTHHH-HTTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCC-----------CHHHHHHHHHH-HCCcEEec
Confidence 578899999999999999999987 6776 5677899999999998642 4555 455555 56999999
Q ss_pred CCCCCC-----CCcEEEEee-cCHHHHHHHHHHHHHHHHhh
Q 012124 430 GDAFGD-----DTCIRISYA-ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 430 g~~f~~-----~~~iRls~~-~~~~~i~~~l~~l~~~l~~~ 464 (470)
|..|+. .+++||+++ .+++++++++++|++++++.
T Consensus 384 g~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 384 GNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp GGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 998874 379999998 49999999999999998764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=396.60 Aligned_cols=364 Identities=34% Similarity=0.578 Sum_probs=320.5
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++..++++....+..........|+++|+|+.|.|++++|+.+.+++.+.+......|++..|..+||+++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~ 82 (370)
T 2z61_A 3 SKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDK 82 (370)
T ss_dssp CHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455666777777777776666678889999999998878899999999998876778988889999999999999988
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.++ +|++.|+++++++
T Consensus 83 ~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~~ 154 (370)
T 2z61_A 83 YKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSDK 154 (370)
T ss_dssp SSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCSS
T ss_pred hCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhcccC
Confidence 99888999999999999999999999999999999999999999999999999999887 5899999999888
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
+++|++++|+||||.+++.+ |+++|++| |++||+||+|.++.+++ ...++..++...+++++++||||.+|++|
T Consensus 155 ~~~v~~~~p~nptG~~~~~~----l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 228 (370)
T 2z61_A 155 TKAIIINSPSNPLGEVIDRE----IYEFAYEN-IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMTG 228 (370)
T ss_dssp EEEEEEESSCTTTCCCCCHH----HHHHHHHH-CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCGG
T ss_pred ceEEEEcCCCCCcCcccCHH----HHHHHHHc-CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCcc
Confidence 99999999999999999966 99999999 99999999999988865 33455666434578999999999998899
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||+++++++++.+........++++++.|.++.++|+. + .++++++++.++++++.+.+.|+++ |+.+..+.
T Consensus 229 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 304 (370)
T 2z61_A 229 WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPI 304 (370)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCC
T ss_pred ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC
Confidence 99999999999999998887777778999999999888864 2 5788899999999999999999988 88888888
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+|+++|+++++ +..++.+.|++++||.+.||..|+. ++++|++++.+++++++++++|+++++
T Consensus 305 ~~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 305 GAYYVFPNIGE-------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp BTTEECCBCSS-------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEecCC-------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 99999999864 4678888887556999999998874 689999999999999999999998875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=404.34 Aligned_cols=365 Identities=31% Similarity=0.536 Sum_probs=318.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQ 169 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~ 169 (470)
.+.++|+|+.|.|++++|+.+.+++.+++... ...|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..
T Consensus 21 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~ 100 (410)
T 3e2y_A 21 ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFN 100 (410)
T ss_dssp TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence 34578999999999999999999999998753 5689888899999999999999999998888 899999999999999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC---------CCCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI---------SENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+++.++++||+|+++.|+|+++...++..|.+++.++++. +.++.+|++.+++++++++++|++++|||||
T Consensus 101 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~npt 180 (410)
T 3e2y_A 101 SIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPL 180 (410)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred HHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCC
Confidence 9999999999999999999999999999999999999873 2456689999999999899999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|.+++.+++++|+++|++| |++||+||+|.++.+++....++..+....+++++++||||.+|++|+|+||++++++++
T Consensus 181 G~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~ 259 (410)
T 3e2y_A 181 GKVYTRQELQVIADLCVKH-DTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLI 259 (410)
T ss_dssp CCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHH
T ss_pred CcCcCHHHHHHHHHHHHHc-CcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHH
Confidence 9999999999999999999 999999999999998876666777776556899999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec
Q 012124 321 AACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~ 395 (470)
+.+........++++++.|.++..+|+. +.. .++++++++.++++++.+.+.|+++ |+.+..|.+|+|+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 337 (410)
T 3e2y_A 260 KHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADV 337 (410)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEEC
T ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEc
Confidence 9999888777888999999999999874 332 6789999999999999999999998 89988899999999988
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+...........+..+..++++++++++||.+.||..|+. .+++||+++.+++++++++++|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 338 SSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp GGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred hhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 6531000000000012357888787777999999998863 479999999999999999999875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-51 Score=415.12 Aligned_cols=350 Identities=25% Similarity=0.402 Sum_probs=306.4
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~-----~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+++++|+|+.|++++++++.+++++.+++. .....|++..|..+||+++++++. +|+.+++++|++|+|++++
T Consensus 67 ~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~a 144 (449)
T 3qgu_A 67 PDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCD 144 (449)
T ss_dssp TTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHH
T ss_pred CCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHH
Confidence 467899999999999999999999999987 456789888999999999999997 7888899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE----------EEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT----------PVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+..+ ..++++||+|++++|+|+++...++..|++ ++.++++.++++..|++.+ +++++|++++|
T Consensus 145 l~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p 218 (449)
T 3qgu_A 145 IARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSP 218 (449)
T ss_dssp HHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESS
T ss_pred HHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCC
Confidence 9988 888899999999999999999999999999 9999998766665665432 57899999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
|||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++...+++++++||||.+|++|+|+||++++
T Consensus 219 ~NPtG~~~~~~~l~~l~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 297 (449)
T 3qgu_A 219 NNPTGAAATRAQLTELVNFARKN-GSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVP 297 (449)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecC
Confidence 99999999999999999999999 99999999999999887666677777655688999999999999999999999999
Q ss_pred HHHHH--------HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce
Q 012124 317 KHFVA--------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388 (470)
Q Consensus 317 ~~~~~--------~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g 388 (470)
+++++ .+.........+++++.|.++.+++... ..++++++++.++++++++.+.|+++ |+.+..+.++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 374 (449)
T 3qgu_A 298 KALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPE--GLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGDDA 374 (449)
T ss_dssp TTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESSSS
T ss_pred HHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCe
Confidence 88765 4555555556678999999999998741 14678999999999999999999988 8988888889
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|+|+.++ .. +..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|++++++-.
T Consensus 375 ~~~~~~~~-~~-----------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 375 PYIWVGFP-GK-----------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENILEAVRRFKEAYGKRN 441 (449)
T ss_dssp SEEEEECT-TS-----------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHC---
T ss_pred eEEEEECC-CC-----------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence 99999998 32 7889999998877999999998874 589999998899999999999999987543
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=400.91 Aligned_cols=351 Identities=22% Similarity=0.356 Sum_probs=316.2
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.|+++|||+.|++++++++.+.+++.+++.+....|++ .| .++|+++++++.+.+|+++++++|++|+|+++++..++
T Consensus 21 ~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~ 98 (377)
T 3fdb_A 21 YGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAI 98 (377)
T ss_dssp SCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHH
T ss_pred cCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHH
Confidence 57789999999999989999999999999887788977 77 89999999999999999889999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++++||+|+++.|+|+++...++..|++++.+|++.+ +|++.|+++++++++++++++||||||.+++.+++++
T Consensus 99 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~ 174 (377)
T 3fdb_A 99 DHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNE 174 (377)
T ss_dssp HHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHH
T ss_pred HHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999998643 8999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCC-CCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~ 329 (470)
|+++|++| |++||+||+|.++.+++ ....++..++. .+++++++||||.+|++|+|+||+++ ++++++.+......
T Consensus 175 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3fdb_A 175 LCDLAHRY-DARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPV 252 (377)
T ss_dssp HHHHHHHT-TCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHH
T ss_pred HHHHHHHc-CCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHh
Confidence 99999999 99999999999998876 55556665544 57899999999999889999999886 78899999887776
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (470)
..++++++.|.++.++++. .+++++++++.++++++.+.+.|++ +||+.+..+.+++++|++++..-
T Consensus 253 ~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 320 (377)
T 3fdb_A 253 IKDGASTLGLIAAEAAYRY---GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT--------- 320 (377)
T ss_dssp HHCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC---------
T ss_pred hcCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC---------
Confidence 7788999999999999986 3788999999999999999999998 88999999999999999998631
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 409 IENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 409 ~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
...++++.|++++||.+.||..|+. ++++|++++.+++++++++++|+++++++
T Consensus 321 --~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 321 --IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp --CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred --CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 2246777888777999999998875 68999999999999999999999998754
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=400.70 Aligned_cols=379 Identities=26% Similarity=0.466 Sum_probs=329.0
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++...++++...+.+........|+++|+|+.|.+++++++.+++++ +.+......|++..|..++|+++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~ 94 (409)
T 2gb3_A 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKR 94 (409)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 56667777777776677766666677889999999999887888899999 88766567898888999999999999998
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|++.++++.+ ++.|++++++
T Consensus 95 ~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~ 173 (409)
T 2gb3_A 95 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE 173 (409)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT
T ss_pred HhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc
Confidence 889888889999999999999999999999999999999999999999999999999999875445555 8999999988
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
++++|++++|+||||.++|.+++++|+++|+++ |++||+||+|+++.+++. ..++ +....+++++++||||.+|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~~~~~-~~~~--~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGE-FASA--LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSC-CCCG--GGSCCTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEECcccccccCCC-CCCc--cccCCCCEEEEecchhccCCc
Confidence 999999999999999999999999999999999 999999999999887652 2332 222236789999999999989
Q ss_pred cceeeEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee-cC
Q 012124 307 GWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 384 (470)
Q Consensus 307 G~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~ 384 (470)
|+|+||+++++ ++++.+......+. +++.+.|.++.++|+. ...+++++++.++++++.+.+.|+++ |+.+ ..
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 324 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTK 324 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeC
Confidence 99999999998 99999988777666 7899999999999976 37789999999999999999999988 8888 77
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAV 454 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~pg~~f~~-----~~~iRls~~~~~~~i~~~l 454 (470)
+.+|+++|++++.. +..++++.|+++ +||.+.||..|+. ++++|++++.+++++++++
T Consensus 325 ~~~~~~~~~~~~~~------------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~ 392 (409)
T 2gb3_A 325 PSGAFYITAELPVE------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAI 392 (409)
T ss_dssp CSBSSEEEEECSSS------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHH
T ss_pred CCeeEEEEEEeCCC------------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHH
Confidence 88899999998732 678899988876 5999999988864 5799999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 012124 455 ERIKKGLLTLRPGV 468 (470)
Q Consensus 455 ~~l~~~l~~~~~~~ 468 (470)
++|++++++++.+.
T Consensus 393 ~~l~~~l~~~~~~~ 406 (409)
T 2gb3_A 393 DVLMEGLKMFCSSR 406 (409)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhcc
Confidence 99999998876543
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=402.42 Aligned_cols=357 Identities=23% Similarity=0.339 Sum_probs=318.8
Q ss_pred CeEEccCCCCC-CCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPD-FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~-~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al~~~~ 171 (470)
.+|||+.|++. +++++.+++++.+++.+. ...|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 37999999887 567889999999988753 3468888999999999999999999988767 79999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC----CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
.+++++||+|+++.|+|+++...++..|++++.++++. ++++.+|++.|++++++++++|++++||||||.++|.+
T Consensus 120 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 199 (407)
T 3nra_A 120 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 199 (407)
T ss_dssp HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHH
T ss_pred HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHH
Confidence 99999999999999999999999999999999999842 35677999999999988999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC-CCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 326 (470)
++++|+++|++| |++||+||+|+.+.+++....++..++ ...+++++++||||.+|++|+|+||+++++++++.+...
T Consensus 200 ~l~~i~~~~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~ 278 (407)
T 3nra_A 200 EIGQIAALAARY-GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 278 (407)
T ss_dssp HHHHHHHHHHHH-TCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH
Confidence 999999999999 999999999999998876666777665 446899999999999999999999999999999999988
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCC
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 406 (470)
...+.++++++.|.++..+++. ...++++.+++++++++.+.+.|++++++.+..+.+++|+|++++...
T Consensus 279 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------- 348 (407)
T 3nra_A 279 QAIVSLRAAGYSQAVLRGWFDE---APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------- 348 (407)
T ss_dssp HHHHTSSSCHHHHGGGGGTTCC---CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS-------
T ss_pred HhhhccCCChHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCC-------
Confidence 8888888999999998888875 357788889999999999999999988999888899999999997620
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+..++++.|++++||.+.||..|+ .++++|++++.+++++++++++|++++++++
T Consensus 349 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 349 ---VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQDHEAAVAAARRIVTLVERYR 406 (407)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred ---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 1678899988777799999999887 3579999999999999999999999998775
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-51 Score=404.54 Aligned_cols=365 Identities=12% Similarity=0.107 Sum_probs=290.9
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---C--CCChHHHHHHHHHHH-H-cCCCCCCCCcCcHHHHHHHH
Q 012124 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---D--FDTPVLIAEAGINAI-R-EGFTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~--~~~~~~~~~a~~~~~-~-~~~~~y~~~~g~~~lr~~ia 141 (470)
.++...+++++..+.+..... ..+++|+|+.|.+ + +.+++.+.++.. .+ . ...++|++..|.++||++++
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~--~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia 82 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKED--TCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQ 82 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTS--SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHhcC--CCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHH
Confidence 456666777666655443322 2357899999973 3 334788888877 43 2 35678999999999999999
Q ss_pred HHHHHHcCCCCCCCc--EEEecChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 142 HKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~--i~it~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
+|+.+..+..+++++ |++|+|+++++.+++.++.+ | |+|++++|+|++|...++..|++++.+|+..++++++|+
T Consensus 83 ~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 161 (405)
T 3k7y_A 83 NLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINY 161 (405)
T ss_dssp HHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECH
T ss_pred HHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCH
Confidence 999765555566665 59999999999999999987 9 999999999999999999999999999995455688999
Q ss_pred HhHhhhcc--CCceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC--cccccccCCCCCc
Q 012124 218 KVLESKLT--EKSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMWER 292 (470)
Q Consensus 218 ~~l~~~l~--~~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~--~~~~~~~~~~~~~ 292 (470)
+.|+++++ ++++++++++| |||||.+++.+++++|+++|++| +++||+||+|.+|.|++.. ..++..+....++
T Consensus 162 ~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~-~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 240 (405)
T 3k7y_A 162 DLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIA 240 (405)
T ss_dssp HHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCC
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CeEEEEecCcccccCCCcccchHHHHHHHhcCCc
Confidence 99999985 35678888665 99999999999999999999999 9999999999999886421 2234344333579
Q ss_pred eEEEeccCcccccccceeeEEEc---CHHHHHHHH----HHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACN----KIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKA 362 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~----~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~ 362 (470)
+|+++||||+|+++|+|+||+++ ++++++.+. ...+....+++.+.|.++..+|.++.+ +.++++++++.
T Consensus 241 ~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~ 320 (405)
T 3k7y_A 241 FSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQR 320 (405)
T ss_dssp EEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999863 666665543 333444556788999999999986321 13557778888
Q ss_pred HHHHHHHHHHHhc----cCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012124 363 FRERRDFLVKSFG----ELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 435 (470)
Q Consensus 363 ~~~~~~~l~~~L~----~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~ 435 (470)
|+++|+.+.+.|+ ++. +|++..|++|||+|+.++. +++++| +++||.+.||.
T Consensus 321 ~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----------------~~~~~L-~~~gV~v~p~~---- 379 (405)
T 3k7y_A 321 ITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----------------KIAEHL-KTHHIYIINNG---- 379 (405)
T ss_dssp HHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----------------GGTTTT-TTTTEECCTTS----
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----------------HHHHHH-HHCCEeecCCC----
Confidence 9999999999999 762 2688899999999998753 234566 67899999963
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012124 436 DTCIRISYAA-SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 436 ~~~iRls~~~-~~~~i~~~l~~l~~~l~~ 463 (470)
|||++. ++++++.++++|++++++
T Consensus 380 ----Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 ----RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ----EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred ----eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 999997 889999999999999875
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=395.16 Aligned_cols=358 Identities=19% Similarity=0.297 Sum_probs=318.6
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.|+++|+|+.|++++++|+.+.+++.+++.+....|++. ..++++++++++.+.+|.++++++|++|+|+++++.+++
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~ 102 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMV 102 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHH
Confidence 345789999999999999999999999998777788655 689999999999999998889999999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
.+++++||+|++++|+|+++...++..|++++.+|++ .++++.+|++.|+++++ +++++|++++||||||.++|.+++
T Consensus 103 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l 182 (391)
T 3dzz_A 103 RQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV 182 (391)
T ss_dssp HHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred HHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence 9999999999999999999999999999999999996 34556799999999997 789999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQ 327 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~ 327 (470)
++|+++|++| |++||+||+|+++.+.+....++..+... .++++++.||||.+|++|+|+||++++ +++++.+....
T Consensus 183 ~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 261 (391)
T 3dzz_A 183 KRIAELCAKH-QVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF 261 (391)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH
Confidence 9999999999 99999999999998887666677766532 478999999999999899999999997 89999888765
Q ss_pred hh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 328 SQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 328 ~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
.. ..++++++.|.++..++.. ..++++++++.++++++.+.+.|++ ++|+.+..+.+++++|++++..-
T Consensus 262 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------ 332 (391)
T 3dzz_A 262 FLAGIGEPNLLAIPAAIAAYEE---GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALG------ 332 (391)
T ss_dssp HHHTCSSCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGC------
T ss_pred HhhccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcC------
Confidence 43 3457889999999999886 3788999999999999999999998 89999999999999999997530
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~--~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+..++.+.|++++||.+.||..|+.. +++|++++.+++++++++++|++++++++
T Consensus 333 ----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 333 ----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLKQGVLNLN 390 (391)
T ss_dssp ----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHHHHHHTCC
T ss_pred ----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 168889999875569999999988764 79999999999999999999999998764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=414.28 Aligned_cols=395 Identities=21% Similarity=0.345 Sum_probs=305.6
Q ss_pred ccccccccCCchHHHHHHHHHHHHh---cCC-----CeEEccCCCCC---CCC----------------------hHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQ---AGV-----SVIRLAAGEPD---FDT----------------------PVLIA 113 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~i~l~~g~~~---~~~----------------------~~~~~ 113 (470)
+++++.++.......+...+.++++ .|. ++|.++.|+|. ..+ |..++
T Consensus 28 ~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~ 107 (498)
T 3ihj_A 28 MNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAK 107 (498)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHH
T ss_pred HHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHH
Confidence 3444444443333334444444444 344 78999999883 222 55556
Q ss_pred HHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHc-CCCCCCCcEEEecChHHHHHHHHHHhcCCCC----eEEEc
Q 012124 114 EAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEEN-GLSYTPDQILVSNGAKQSILQAVLAVCSPGD----EVIIP 184 (470)
Q Consensus 114 ~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~-g~~~~~~~i~it~g~~~al~~~~~~l~~~gd----~Vlv~ 184 (470)
+++.+++.. ....|+++.|.+++|++|++++.+.+ |+++++++|++|+|+++++.+++.+++++|| +|+++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~ 187 (498)
T 3ihj_A 108 KRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIP 187 (498)
T ss_dssp HHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEE
T ss_pred HHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEe
Confidence 666777764 34689999999999999999999888 4888999999999999999999999999875 99999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012124 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 185 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
.|+|+.+...++..|++++.++++++++|++|++.|++++++ ++++|++++||||||.++|.+++++|+++|++|
T Consensus 188 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~ 267 (498)
T 3ihj_A 188 IPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE 267 (498)
T ss_dssp ESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999888899999999999965 589999999999999999999999999999999
Q ss_pred CCEEEEEeccccccccCCC-CcccccccCC-------CCCceEEEeccCccc-ccccceeeEEE---cCHHHHHHHHHHh
Q 012124 260 PRLLVLSDEIYEHIIYAPA-THTSFASLPG-------MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQ 327 (470)
Q Consensus 260 ~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~-------~~~~~i~i~S~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~ 327 (470)
+++||+||+|.++.|++. ...++..+.. ...++|+++||||.+ |++|+|+||++ +++++++.+.+..
T Consensus 268 -~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~ 346 (498)
T 3ihj_A 268 -KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL 346 (498)
T ss_dssp -TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH
T ss_pred -CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH
Confidence 999999999999999754 4555555321 124589999999999 78999999998 6999999998876
Q ss_pred hhccCCCChHHHHHHHHHHhc-----CCCChHH---HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCcc
Q 012124 328 SQFTSGASSISQKAGVAALGL-----GYAGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 399 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~-----~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~ 399 (470)
. ...+++.+.|.++..+++. +.+ ..+ .+++++.++++++.+.+.|++++|+++..|++|||+|++++...
T Consensus 347 ~-~~~~~~~~~q~a~~~~l~~~~~g~~~~-~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~ 424 (498)
T 3ihj_A 347 S-VRLCPPVSGQAAMDIVVNPPVAGEESF-EQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPA 424 (498)
T ss_dssp H-HSCCCCHHHHHHHHHHTCCCCTTSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCH
T ss_pred h-ccCCCCHHHHHHHHHHhcCCccCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCch
Confidence 6 5567899999999888874 121 334 46778899999999999999999999999999999998764210
Q ss_pred CC-cccCCCCCCCHHHH-HHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 400 GS-EAEGFGKIENSESL-CRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 400 ~~-~~~~~~~~~~~~~l-~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.. ...... ..+.+++ +.++++++||.+.||+.|+. .++||++++.+++++++++++|++++++++
T Consensus 425 ~~~~~~~~~-g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 425 KAVEAAQAH-QMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhc-CCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 0134444 66677777999999999984 359999998899999999999999988754
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=396.93 Aligned_cols=380 Identities=23% Similarity=0.372 Sum_probs=324.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia 141 (470)
++.+...+.++....+.........+|+++|||+.|.|+.. +++.+.+++.+++... .. |++..|..++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la 85 (407)
T 2zc0_A 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELA 85 (407)
T ss_dssp SCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHH
T ss_pred hhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHH
Confidence 34455666666666665555443346778999999988754 5788999999888753 35 988889999999999
Q ss_pred HHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 142 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
+++.+.+|+++++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|.+.+ ++|++.|+
T Consensus 86 ~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~ 162 (407)
T 2zc0_A 86 AFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GMRVDLLE 162 (407)
T ss_dssp HHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHH
T ss_pred HHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC---CCCHHHHH
Confidence 999888898788899999999999999999999999999999999999999999999999999998643 38999999
Q ss_pred hhcc----C--CceEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceE
Q 012124 222 SKLT----E--KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 294 (470)
Q Consensus 222 ~~l~----~--~~~~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i 294 (470)
++++ + ++++|+ +++||||||.++|.+++++|+++|++| |++||+||+|.++.+++....++..++. .++++
T Consensus 163 ~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~-~~~~i 240 (407)
T 2zc0_A 163 EKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDN-EGRVI 240 (407)
T ss_dssp HHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBSSCSSCCCGGGGCS-SCCEE
T ss_pred HHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECCCcccccCCCCCCChhhcCC-CCCEE
Confidence 9987 6 788875 689999999999999999999999999 9999999999998887655556666654 46899
Q ss_pred EEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 373 (470)
+++||||.++ +|+|+||+++++++++.+........++++++.|.++..+++.+.+ + ++++++++.++++++.+.+.
T Consensus 241 ~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T 2zc0_A 241 VAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKA 318 (407)
T ss_dssp EEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHH
T ss_pred EEcccccccC-CCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999998887777778899999999999987432 4 67888899999999999999
Q ss_pred hcc-CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CH
Q 012124 374 FGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SL 447 (470)
Q Consensus 374 L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~ 447 (470)
|++ ++++.+..|.+|+|+|+++++.. +..++++.|.+++||.+.||..|+. ++++|++++. ++
T Consensus 319 L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~ 387 (407)
T 2zc0_A 319 LENHLPNAEFTKPIAGMFVMFFLPEGA-----------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSK 387 (407)
T ss_dssp HHHHCTTSCBCCCSBSSEEEEECSTTC-----------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCT
T ss_pred HHHhCCCCEEecCCCcEEEEEEcCCCC-----------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCH
Confidence 987 57888877888999999997542 6788999988777999999988853 5799999998 78
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 012124 448 TTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++|+++++++.
T Consensus 388 ~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 388 EEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp THHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=399.76 Aligned_cols=361 Identities=20% Similarity=0.306 Sum_probs=311.7
Q ss_pred cCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC
Q 012124 74 VKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
+++.+...+.+.......+| ++|||+.|++++++|+.+.+++.+.+ .....|++..|..++|+++++++.+.+|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~ 81 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKK-RGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK 81 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSS-CCCBCSSCCCCSCCCHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCcchHHHHHHHHHhhhccC-CEEEeCCCCCCCCCCHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 34555556655555444566 89999999999988999999998877 44678988899999999999999998898888
Q ss_pred CCcEEEecChHHHHHHHHHHhcCC--CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEE
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSP--GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 231 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i 231 (470)
+++|++|+|+++++.+++++++++ ||+|++++|+|+++...++..|++++.++++.+++ +++ .+++++.++++++
T Consensus 82 ~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~-~l~~~~~~~~~~v 158 (376)
T 3ezs_A 82 ENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEND--FTP-SLNEKELQEVDLV 158 (376)
T ss_dssp GGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGT--SCC-CCCHHHHHHCSEE
T ss_pred HHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCC--cch-hHHhhhccCCCEE
Confidence 999999999999999999999999 99999999999999999999999999999976544 444 6677776789999
Q ss_pred EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC-----CCCceEEEeccCcccccc
Q 012124 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-----MWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 232 ~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~-----~~~~~i~i~S~sK~~~~~ 306 (470)
++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++..... ..+++++++||||.+|++
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKH-DFILINDECYSEIYENTP-PPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCC-CCCHHHccccccccccCcEEEEecchhccCCc
Confidence 9999999999999999999999999999 999999999999888763 333333210 258899999999999889
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+........++++++.|.++.++++. .+++++.++.++++++.+.+.|+ ++. .+.
T Consensus 237 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~ 307 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD----DRHAEFFRNIYANNLKLARKIFK---NTL--IYP 307 (376)
T ss_dssp GGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC----SHHHHHHHHHHHHHHHHHHHHST---TCC--CCS
T ss_pred cceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCC
Confidence 999999999999999999888877888999999999999985 57789999999999999999997 554 678
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+|+|+|++++ +..++++.|++++||.+.||..|+ .++++||+++.+++++++++++|+++++
T Consensus 308 ~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 308 YSFYVYLPVQ--------------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp BSSEEEEECS--------------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEECC--------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 8999999986 467888888874699999999987 3579999998899999999999999987
Q ss_pred hh
Q 012124 463 TL 464 (470)
Q Consensus 463 ~~ 464 (470)
+.
T Consensus 374 ~~ 375 (376)
T 3ezs_A 374 NH 375 (376)
T ss_dssp C-
T ss_pred hc
Confidence 54
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=395.48 Aligned_cols=356 Identities=24% Similarity=0.348 Sum_probs=312.7
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++++|+.|.+++.+++.+.+++.+.+......|++. ..++|+++++++.+.+|+++++++|++|+|+++++.+++++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~ 108 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVRE 108 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHH
Confidence 3789999999988889999999999987667788654 89999999999998889878889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++||+|++++|+|+++...++..|++++.+|++. ++++.+|++.|+++++ +++++|++++||||||.++|.+++++
T Consensus 109 l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 109 FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 999999999999999999999999999999999863 3346699999999997 68999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhh
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~ 329 (470)
|+++|++| |++||+||+|.++.+++....++..++.. .+++++++||||.+|++|+|+||++++ +++++.+......
T Consensus 189 i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~ 267 (399)
T 1c7n_A 189 IKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA 267 (399)
T ss_dssp HHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh
Confidence 99999999 99999999999998876555566655421 368899999999999899999999997 6799998887766
Q ss_pred ccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCc-cCCcccCC
Q 012124 330 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY-YGSEAEGF 406 (470)
Q Consensus 330 ~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 406 (470)
+++ +++++.|.++.++|+. ..+++++.++.++++++.+.+.|++ +||+.+..+.+++++|++++.. .
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 337 (399)
T 1c7n_A 268 TSGMPFTTLGYKACEICYKE---CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKM------- 337 (399)
T ss_dssp TTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCC-------
T ss_pred cccCCCCHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCCC-------
Confidence 654 5799999999999886 3678999999999999999999998 8899888889999999999752 1
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+..++++.|++++||.+.||..|+ .++++|++++..++++++++++|++++++++.
T Consensus 338 ----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 338 ----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp ----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 677899988766799999999886 46799999999889999999999999988753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=392.00 Aligned_cols=351 Identities=24% Similarity=0.401 Sum_probs=313.9
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
++++|+|+.|++++++|+.+.+++.+.+.+....|++ +..++++++++++.+.+|+++++++|++|+|+++++.+++.
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLIN 108 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHH
Confidence 4688999999999999999999999998776677754 67999999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc--CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+++++||+|+++.|+|+++...++..|++++.+|++ .++++.+|++.|++++++ +++|++++|+||||.++|.++++
T Consensus 109 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~ 187 (391)
T 4dq6_A 109 ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELK 187 (391)
T ss_dssp HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHH
Confidence 999999999999999999999999999999999997 456678999999999988 99999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCH-HHHHHHHHHhh
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQS 328 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~ 328 (470)
+|+++|++| |++||+||+|.++.+++....++..+..+ .++++++.||||.+|++|+|+||+++++ ++++.+.....
T Consensus 188 ~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 266 (391)
T 4dq6_A 188 KLGDICLKH-NVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT 266 (391)
T ss_dssp HHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH
Confidence 999999999 99999999999998887666666666532 4789999999999988999999999875 89988887755
Q ss_pred hc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccC-ccCCcccC
Q 012124 329 QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFST-YYGSEAEG 405 (470)
Q Consensus 329 ~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~-~~~~~~~~ 405 (470)
.. .++++++.|.++..++.. .++++++.++.++++++.+.+.|++ ++|+.+..+.+++++|++++. ..
T Consensus 267 ~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 337 (391)
T 4dq6_A 267 RIDIKRNNCFSLVATEASYNN---GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGL------ 337 (391)
T ss_dssp HTTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCC------
T ss_pred hhcCCCCCHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCC------
Confidence 44 346889999999998886 3788999999999999999999988 789999999999999999985 22
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+..++++.|.+++||.+.||..|+. ++++|++++.+++++++++++|++++
T Consensus 338 -----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 338 -----SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp -----CHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 7889999988777999999998875 48999999999999999999999876
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=404.54 Aligned_cols=355 Identities=21% Similarity=0.352 Sum_probs=309.7
Q ss_pred CCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCC-CCCCcEEEecChHHH
Q 012124 93 GVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLS-YTPDQILVSNGAKQS 166 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~-~~~~~i~it~g~~~a 166 (470)
++++|||+.|.|+.. +++.+.+++.+++... ...|++..|..+||+++++++.+.+|++ +++++|++|+|++++
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~a 121 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQA 121 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHH
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHH
Confidence 457899999988654 5788999999888653 4689888899999999999998777877 788999999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--------CceEEE-EcCCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE--------KSRLLI-LCSPS 237 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--------~~~~i~-l~~p~ 237 (470)
+.+++++++++||+|++++|+|+++...++..|++++.+|++.+ ++|++.|++++++ ++++|+ +++||
T Consensus 122 l~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~ 198 (425)
T 1vp4_A 122 LDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFH 198 (425)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSC
T ss_pred HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCCceEEEECCCCC
Confidence 99999999999999999999999999999999999999998653 3899999998865 788885 79999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||.++|.+++++|+++|+++ |++||+||+|.++.+++....++..++. .+++++++||||.++ +|+|+||+++++
T Consensus 199 nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~i~~~s~sK~~~-~G~r~G~~~~~~ 275 (425)
T 1vp4_A 199 NPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKIGG-PERVVLLNTFSKVLA-PGLRIGMVAGSK 275 (425)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCCCHHHHHC-TTTEEEEEESTTTTC-GGGCEEEEECCH
T ss_pred CCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHHhCC-CCCEEEEeccccccc-cccceEEEeeCH
Confidence 9999999999999999999999 9999999999999887655556665543 478999999999999 999999999999
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CC---CCeecCCCceEEEee
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LE---GVKMSEPQGAFYLFI 393 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~---g~~~~~~~~g~~~~~ 393 (470)
++++.+.......+++++++.|.++..+|+.+.+ +++++++++.++++++.+.+.|++ ++ |+.+..|.+|+|+|+
T Consensus 276 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~ 354 (425)
T 1vp4_A 276 EFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWL 354 (425)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEE
T ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEE
Confidence 9999998877777778899999999999987533 678899999999999999999987 45 688887888999999
Q ss_pred eccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 394 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++++.. +..++++.|.++ ||.+.||..|+. ++++||+++. +++++++++++|+++++++..
T Consensus 355 ~~~~~~-----------~~~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 355 TLPEGF-----------DTWEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp ECCTTC-----------CTTTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCC-----------CHHHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 998532 566788888877 999999998853 5799999998 799999999999999887643
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-49 Score=391.43 Aligned_cols=352 Identities=18% Similarity=0.305 Sum_probs=306.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHH-HHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE-LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~-lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++|+|+.|.+++.+++.+.+++.+.+......|++. ..+ ||+++++++.+.+|+++++++|++|+|+++++.+++++
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 579999999988889999999999987666788654 778 99999999998889888899999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC-CCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++++||+|++++|+|+++...++..|++++.+|++.++ +|.+|++.|++++++ ++++|++++||||||.++|.+++++
T Consensus 107 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 107 WSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp SSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999999987653 567999999999975 8999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhh-h
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS-Q 329 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~-~ 329 (470)
|+++|++| |++||+||+|.++.+++....++..++... ..+ +.||||.+|++|+|+||++++ +++++.+..... .
T Consensus 187 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 263 (390)
T 1d2f_A 187 MADLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVARGD-WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR 263 (390)
T ss_dssp HHHHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTCCSS-EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCCcCHHHcchhh-Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhh
Confidence 99999999 999999999999988765556666665322 123 999999999899999999985 788888887665 4
Q ss_pred ccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCc-cCCcccCC
Q 012124 330 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY-YGSEAEGF 406 (470)
Q Consensus 330 ~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~ 406 (470)
..+ +++++.|.++.++++. ..+++++.++.++++++.+.+.|++ +||+.+..+.+++++|++++.. .
T Consensus 264 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 333 (390)
T 1d2f_A 264 DGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNI------- 333 (390)
T ss_dssp SCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCC-------
T ss_pred cccCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEccccCC-------
Confidence 444 6889999999888886 3678999999999999999999998 7889888889999999999753 2
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC--CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++.+.|++++||.+.||..|+ .++++||+++.+++++++++++|++++++++
T Consensus 334 ----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~~ 390 (390)
T 1d2f_A 334 ----DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 390 (390)
T ss_dssp ----CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhC
Confidence 677899988866799999999886 3579999999988999999999999998753
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=396.52 Aligned_cols=362 Identities=25% Similarity=0.404 Sum_probs=307.2
Q ss_pred CCeEEccCCCC----CCCChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHHHH------HcCCCCCCCcEEEecC
Q 012124 94 VSVIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE------ENGLSYTPDQILVSNG 162 (470)
Q Consensus 94 ~~~i~l~~g~~----~~~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l~~------~~g~~~~~~~i~it~g 162 (470)
+++|+|+.|.| ++.+++.+.+++.+.+... ...|++..|..+||+++++++.+ .+|+++++++|++|+|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 57899999997 4666899999999998764 46798888999999999999983 2577778899999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCccc
Q 012124 163 AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 163 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~ 242 (470)
+++++.+++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|+++++++++++++++|+||||.
T Consensus 113 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~ 192 (416)
T 1bw0_A 113 GSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 192 (416)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCc
Confidence 99999999999999999999999999999999999999999999876556789999999999888999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC----CcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA----THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~----~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
++|.+++++|+++|++| |++||+||+|.++.|++. ...++..++. .+++++++||||.++++|+|+||++++++
T Consensus 193 ~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 193 NFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFET-TVPRVILGGTAKNLVVPGWRLGWLLYVDP 270 (416)
T ss_dssp CCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSCC-SCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred ccCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCCCCccCHHHccC-CCcEEEEecchhhCCCCCceEEEEEeeCc
Confidence 99999999999999999 999999999999888765 3455555554 45789999999999889999999998763
Q ss_pred --HHHHHH----HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 319 --FVAACN----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 319 --~~~~l~----~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++.+. ... ...++++++.|.++.++|+.. ...++++.+++++++++++.+.|++++|+.+..|.+|+|+|
T Consensus 271 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 347 (416)
T 1bw0_A 271 HGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLM 347 (416)
T ss_dssp TCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEE
T ss_pred hhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEE
Confidence 444333 221 134578999999999999853 26788999999999999999999998889888788899999
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++++... .....+..++++.|++++||.+.||..|+.++++|++++.+++++++++++|++++++.+.
T Consensus 348 ~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 348 SRIDLEK------YRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHAA 415 (416)
T ss_dssp EEECGGG------BSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHBC
T ss_pred EeCCHHH------cCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 9886310 0000157788888875669999999999888899999988999999999999999987653
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=403.13 Aligned_cols=354 Identities=20% Similarity=0.288 Sum_probs=293.7
Q ss_pred hHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCeEEE
Q 012124 109 PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVII 183 (470)
Q Consensus 109 ~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv 183 (470)
|..+++++.+.+.. ....|+++.|..+||+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|++
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 187 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV 187 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 45566666777765 45789999999999999999999989998999999999999999999999998 89999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHH
Q 012124 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 257 (470)
Q Consensus 184 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~ 257 (470)
++|+|+++...++..|++++.++++.+++|.+|++.|++++++ ++++|++++||||||.++|.+++++|+++|+
T Consensus 188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999887889999999999975 7899999999999999999999999999999
Q ss_pred hCCCEEEEEeccccccccCCC-Ccccccc----cC--CCCCceEEEeccCccc-ccccceeeEEEc---CHHHHHHHHHH
Q 012124 258 KHPRLLVLSDEIYEHIIYAPA-THTSFAS----LP--GMWERTLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKI 326 (470)
Q Consensus 258 ~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~----~~--~~~~~~i~i~S~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~ 326 (470)
+| +++||+||+|+++.|++. ...++.. +. ....++|+++||||.+ |++|+|+||+++ ++++++.+.+.
T Consensus 268 ~~-~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 346 (500)
T 3tcm_A 268 NE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI 346 (500)
T ss_dssp HH-TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH
T ss_pred Hc-CCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH
Confidence 99 999999999999998643 3444432 21 1234689999999999 889999999998 89999999887
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc--C
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS--T 397 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~--~ 397 (470)
.. ...+++.+.|.++..++..... ..++.+++++.++++++.+.+.|++++|+++..|++|||+|+++. .
T Consensus 347 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~ 425 (500)
T 3tcm_A 347 AS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQ 425 (500)
T ss_dssp HH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCH
T ss_pred Hh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCch
Confidence 64 5678899999999999974220 135677888999999999999999999999999999999996553 2
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
....... ..+..+...++.++++++||.+.||+.|+. .++||++++.+++++++++++|++++++++
T Consensus 426 ~~~~~~~-~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 426 KAIEAAK-AANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp HHHHHHH-HHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-hcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 1000000 000012334456677777999999999984 358999999988999999999999987653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=399.66 Aligned_cols=372 Identities=19% Similarity=0.213 Sum_probs=320.5
Q ss_pred CchHHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHHHHHHHHHcCCCCC
Q 012124 76 PSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYT 153 (470)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~g~~~~ 153 (470)
..+...+........ ..|+++|+|+.|.|++++++.+++++.+.+.... ..|++..|..++|+++++++.+.+|++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~ 104 (437)
T 3g0t_A 25 MASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP 104 (437)
T ss_dssp GCCHHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC
T ss_pred CcHHHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC
Confidence 344555555444433 4678899999999999889999999999988665 88988899999999999999999999999
Q ss_pred CCcEEEecChHHHHHHHHHHhc--CCCC--eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCc
Q 012124 154 PDQILVSNGAKQSILQAVLAVC--SPGD--EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEKS 228 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~ 228 (470)
+++|++|+|+++++.+++.+++ ++|| +|++++|+|+++...++..|++++.++++ ++++.+|++.|++++ ++++
T Consensus 105 ~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~ 183 (437)
T 3g0t_A 105 ARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQTGQF 183 (437)
T ss_dssp GGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCC
T ss_pred cccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhcCCc
Confidence 9999999999999999999998 9999 99999999999999999999999999997 456778999999999 7789
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc----cc-cccCCCCCceEEEeccCccc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT----SF-ASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~----~~-~~~~~~~~~~i~i~S~sK~~ 303 (470)
++|++++||||||.+++.+++++|+++|++| |++||+||+|+++.+++.... ++ ..++...+++++++||||.+
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 9999999999999999999999999999999 999999999999887632111 11 44433368899999999999
Q ss_pred ccccceeeEEEcCHHHHH-H-----------------HHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 304 AMTGWRLGYIAGPKHFVA-A-----------------CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
+++|+|+||+++++++++ . +........++++.+.|.++..+|+.+...+.++++.++++++
T Consensus 263 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (437)
T 3g0t_A 263 SYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGR 342 (437)
T ss_dssp SCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 999999999999999998 7 7776666677899999999999998632112238899999999
Q ss_pred HHHHHHHHhccCCCCeec------CC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--
Q 012124 366 RRDFLVKSFGELEGVKMS------EP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD-- 436 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~~~~------~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~-- 436 (470)
+++.+.+.|+++ |+.+. .| .+++|+|++++.. +..++++.|.++ ||.+.||..|+..
T Consensus 343 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~L~~~-gi~v~~~~~~~~~~~ 408 (437)
T 3g0t_A 343 KARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------------DSSKLIEKFVRY-GMCAITLKTTGSKRN 408 (437)
T ss_dssp HHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC------------CHHHHHHHHHHT-TEECEESTTTTCCCT
T ss_pred HHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC------------CHHHHHHHHHHc-CeEEeeccccCCCCC
Confidence 999999999998 88887 34 8899999999832 788999998876 9999999988753
Q ss_pred CcEEEEeec-CHHHHHHHHHHHHHHHHh
Q 012124 437 TCIRISYAA-SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 437 ~~iRls~~~-~~~~i~~~l~~l~~~l~~ 463 (470)
+++|++++. +++++++++++|++++++
T Consensus 409 ~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 409 EAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 789999998 899999999999998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=406.13 Aligned_cols=373 Identities=14% Similarity=0.175 Sum_probs=292.4
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEE
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIR 98 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (470)
-|||.|++|++|+++.+| +|.+|.++| .+|+
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~----------------------------------------------~~i~ 36 (422)
T 3d6k_A 3 AMSLKDYDAARLAQVREEVTAKYAELKAKN----------------------------------------------LSLD 36 (422)
T ss_dssp ---------------CHHHHHHHHHHHHTT----------------------------------------------CCEE
T ss_pred cccccCCCHHHHHhhHHHHHHHHHHHhccC----------------------------------------------CeEe
Confidence 489999999999998887 666665443 1389
Q ss_pred ccCCCCC---CCChHHHHHHHHHHH--Hc--CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH--HH
Q 012124 99 LAAGEPD---FDTPVLIAEAGINAI--RE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI--LQ 169 (470)
Q Consensus 99 l~~g~~~---~~~~~~~~~a~~~~~--~~--~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al--~~ 169 (470)
|+.|.|+ +++++.+++++.+.+ .. ....|+++.|.++||++|++++ + +++++|++|+|+++++ .+
T Consensus 37 l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~----~--~~~~~i~~t~G~~~al~l~~ 110 (422)
T 3d6k_A 37 LTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL----G--LPADLVVAQDGSSLNIMFDL 110 (422)
T ss_dssp CCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH----T--CCGGGEEECSSCHHHHHHHH
T ss_pred CCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh----C--CChhHEEEecchHHHHHHHH
Confidence 9999998 666767777776553 12 2568999999999999999998 3 5789999999999997 67
Q ss_pred HHHHhcCC------------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEE-EcC
Q 012124 170 AVLAVCSP------------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLI-LCS 235 (470)
Q Consensus 170 ~~~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~-l~~ 235 (470)
++..+..+ +|+|++++|+|+++...++..|++++.+|++.+ ++|++.|++++++ ++++|+ +++
T Consensus 111 ~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~v~~~~~ 187 (422)
T 3d6k_A 111 ISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVRELVKDPQVKGMWTVPV 187 (422)
T ss_dssp HHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHTSTTEEEEEECCS
T ss_pred HHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHHHHHhcCCCeEEEEcCC
Confidence 77877766 347999999999999999999999999999753 3999999999975 789888 699
Q ss_pred CCCCcccCCCHHHHHHHHHHHH-hCCCEEEEEeccccc--cccCCCCccccccc---CCCCCceEEEeccCcccccccce
Q 012124 236 PSNPTGSVYPKNLLDEIARIVA-KHPRLLVLSDEIYEH--IIYAPATHTSFASL---PGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~-~~~~~~iI~Dd~~~~--~~~~~~~~~~~~~~---~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
||||||.++|.+++++|+++|+ +| |++||+||+|.+ +.+++....++..+ ....+++++++||||. +++|+|
T Consensus 188 ~~NPtG~~~~~~~l~~l~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~Glr 265 (422)
T 3d6k_A 188 FGNPTGVTFSEQTCRELAEMSTAAP-DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSG 265 (422)
T ss_dssp SCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhcc-CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccc
Confidence 9999999999999999999999 99 999999999986 43333233344322 1235789999999999 569999
Q ss_pred eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCCeecC
Q 012124 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSE 384 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~ 384 (470)
+||+++++++++.+.......+++++.+.|.++.++|+. +.+ .++++++++.|+++++.+.+.|.+ ++++.+..
T Consensus 266 iG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 344 (422)
T 3d6k_A 266 VSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTS 344 (422)
T ss_dssp CEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECC
T ss_pred eEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeC
Confidence 999999999999999888888888999999999999986 433 578899999999999988888865 33467778
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQAAVERI 457 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~i~~~l~~l 457 (470)
|.+|+|+|++++.. +..++.+.| +++||.+.| |..|. .++++|||++. +++++++++++|
T Consensus 345 p~~g~~~~~~~~~~------------~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 411 (422)
T 3d6k_A 345 PTGGYFISVDVVPG------------TASRVVELA-KEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411 (422)
T ss_dssp CSBSSCEEEEESTT------------CHHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHH
T ss_pred CCcceEEEEECCCC------------CHHHHHHHH-HHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 88999999999753 456676655 456999999 45563 25799999995 999999999999
Q ss_pred HHHHHhhC
Q 012124 458 KKGLLTLR 465 (470)
Q Consensus 458 ~~~l~~~~ 465 (470)
+++++++.
T Consensus 412 ~~~l~~~~ 419 (422)
T 3d6k_A 412 ATCVLMAA 419 (422)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=391.49 Aligned_cols=376 Identities=24% Similarity=0.392 Sum_probs=312.1
Q ss_pred cCccccccccCC-chHHHHHHHHHHHH--hcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCcCcHHH
Q 012124 65 VSLSPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLEL 136 (470)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-----~~~~y~~~~g~~~l 136 (470)
..+++.+..+++ +....+.+...... .+++++|+|+.|++++++|+.+++++.+++.. +...|++..|..+|
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l 103 (432)
T 3ei9_A 24 VSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPL 103 (432)
T ss_dssp CCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHH
T ss_pred cccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHH
Confidence 345555666665 35555544433322 24568999999999998899999999998873 45689888999999
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCC------------EEEE
Q 012124 137 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA------------TPVI 204 (470)
Q Consensus 137 r~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~ 204 (470)
|+++++++.+ ++.+++++|++|+|+++++.++ ..++++||.|++++|+|+++...++..|. +++.
T Consensus 104 ~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 180 (432)
T 3ei9_A 104 RAAIAKTFYG--GLGIGDDDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY 180 (432)
T ss_dssp HHHHHHHHHT--TTTCCGGGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEE
T ss_pred HHHHHHHHHc--cCCCCcceEEECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEE
Confidence 9999999973 6667889999999999999974 77789999999999999999999988884 6788
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++++.++++..|++. .+++++|++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++. ..++.
T Consensus 181 ~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~-~~~li~Dea~~~~~~~~~-~~~~~ 253 (432)
T 3ei9_A 181 MRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVYDSAYAMYMSDDN-PRSIF 253 (432)
T ss_dssp EECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSC-CSSGG
T ss_pred eccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEccchHhhccCCC-CCChh
Confidence 888765555555443 35789999999999999999999999999999999 999999999999887753 34555
Q ss_pred ccCCCCCceEEEeccCcccccccceeeEEEcCHHH--------HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--------VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 356 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~--------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 356 (470)
.++...+++|+++||||.+|++|+|+||+++++++ ++.+.........+++++.|.++.+++... ..+++
T Consensus 254 ~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~ 331 (432)
T 3ei9_A 254 EIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPE--GLEAM 331 (432)
T ss_dssp GSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHH--HHHHH
T ss_pred hcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcc--cHHHH
Confidence 55544578999999999999999999999999988 788877766666778999999999888631 24678
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-
Q 012124 357 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD- 435 (470)
Q Consensus 357 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~- 435 (470)
+++++.++++++++.+.|+++ |+.+..+.+++|+|++++.. +..++++.|++++||.+.||..|+.
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~gv~v~~g~~f~~~ 398 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQ------------SSWDVFAEILEKTHVVTTPGSGFGPG 398 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTS------------CHHHHHHHHHHHHCEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCC------------CHHHHHHHHHHHCCEEEeCchHhCCC
Confidence 999999999999999999988 88888777888999999843 6788888888877999999999875
Q ss_pred -CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 436 -DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 436 -~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
++++||+++.+++++++++++|++--+..+
T Consensus 399 ~~~~iRis~~~~~e~l~~~l~rl~~~~~~~~ 429 (432)
T 3ei9_A 399 GEGFVRVSAFGHRENILEACRRFKQLYKHHH 429 (432)
T ss_dssp GTTEEEEECCSCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHhhhcc
Confidence 579999998899999999999998765443
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=392.11 Aligned_cols=354 Identities=24% Similarity=0.352 Sum_probs=316.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
++++|+|+.|++++++++.+.+++.+++.+....|++. ..++++++++++.+.+|+++++++|++|+|++++++.+++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~ 137 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQ 137 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHH
Confidence 56889999999999999999999999998777778654 3899999999999999988889999999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
++.++||+|++++|+|+++...++..|.+++.+|++ .++++.+|++.|+++++ +++++|++++||||||.+++.++++
T Consensus 138 ~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 138 AFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp HHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999987 55667799999999997 7899999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
+|+++|++| |++||+||+|.++.+++....++..+..+ .++++++.|+||.+|++|+|+||++++ +++++.+.....
T Consensus 218 ~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~ 296 (421)
T 3l8a_A 218 KIAELCKKH-GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL 296 (421)
T ss_dssp HHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH
Confidence 999999999 99999999999999887766777776542 578999999999999899999999998 899998887664
Q ss_pred hc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCC
Q 012124 329 QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 407 (470)
.. .++++++.+.++.++++. .+++++++++.++++++++.+.|++++++.+..+.+++++|++++..-
T Consensus 297 ~~~~~~~n~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~-------- 365 (421)
T 3l8a_A 297 ANNQHEVPTVGMIATQAAFQY---GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYA-------- 365 (421)
T ss_dssp HTTCSCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGT--------
T ss_pred hcccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccC--------
Confidence 33 447899999999999986 478899999999999999999998878899999999999999997520
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
.+..++.+.|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 366 --~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 366 --IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp --CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred --CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 15678888888777999999998875 589999999999999999999998865
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-50 Score=411.29 Aligned_cols=419 Identities=19% Similarity=0.232 Sum_probs=313.7
Q ss_pred cccCCcccc---cccccccc--------------chhhhhhcCCCcccccccC-------cc----ccccccCC--chHH
Q 012124 31 VSFPSRYLH---NFNLNNDR--------------RVLRVMACSGVEEVQVDVS-------LS----PRVNAVKP--SKTV 80 (470)
Q Consensus 31 ~~l~vs~~T---Ay~~L~~~--------------G~i~s~~g~sG~~V~~~~~-------~~----~~~~~~~~--~~~~ 80 (470)
+.-++|..| ++.+|.++ |||+++++ |||||..... +. .....+++ ....
T Consensus 7 ~~~~~s~~~~~~~~~~~a~~~~~~~~l~~~~~np~~i~~~pr-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (546)
T 2zy4_A 7 SLAKLSPFELKDELIKIASSDGNRLMLNAGRGNPNFLATTPR-RAFFRLGLFAAAESELSYSYMTTVGVGGLAKIDGIEG 85 (546)
T ss_dssp CC---CHHHHHHHHHHHCCSHHHHHHHHHCCCCCSEEECHHH-HHHHHHHHHHHHHHHTTCCSCCSSCEEECCCSTTHHH
T ss_pred HHhccCcHhhHHHHHHHHhhcccceeeeCCCCCchhhccChH-HHHHHHHhhhhhhhhhhhhhhhhhhhccCCccccchh
Confidence 456788888 88899999 99999999 9999974321 11 12333333 3333
Q ss_pred HHHHHHHHHHh-cCC----CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHH-HHcCCC---
Q 012124 81 AITDQATALAQ-AGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK-EENGLS--- 151 (470)
Q Consensus 81 ~~~~~~~~~~~-~~~----~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~-~~~g~~--- 151 (470)
.+.+....... +|. .+|+|+.|.|++ +++.+.+++.+.+. ...|+++.|..+||+++++++. +.++..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~~-~~~~~~~al~~~~~--~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~ 162 (546)
T 2zy4_A 86 RFERYIAENRDQEGVRFLGKSLSYVRDQLGL-DPAAFLHEMVDGIL--GCNYPVPPRMLNISEKIVRQYIIREMGADAIP 162 (546)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHH--TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHhcCCCCcchhHHhhhecccCCCCC-CChHHHHHHHHhhh--cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCC
Confidence 33333322211 111 278999999987 45667777777664 3679888999999999887664 433332
Q ss_pred CCCCcEEEecChHHHHHHHHHH-----hcCCCCeEEEcCCCCCChHHHHHH--cCCEEEEecCcCCCCCccCHHhHhhhc
Q 012124 152 YTPDQILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWVSYPEMARI--ADATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 152 ~~~~~i~it~g~~~al~~~~~~-----l~~~gd~Vlv~~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
+++++|++|+|+++++..++.+ +++|||+|++++|+|+.|...+.. .|++++.++.+++++|.+|++.|++++
T Consensus 163 ~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 242 (546)
T 2zy4_A 163 SESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLK 242 (546)
T ss_dssp GGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred CCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhh
Confidence 2568999999999999999988 478999999999999999987554 479999999988788899999999998
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHH--HhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~--~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++++++|++++||||||.+++.+++++|+++| +++ |++||+||+|.++.++ ..++.... .+++|+++||||.
T Consensus 243 ~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~-~~~ii~De~y~~~~~~---~~s~~~~~--~~~~i~~~S~SK~ 316 (546)
T 2zy4_A 243 DPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRP-DLMILTDDVYGTFADD---FQSLFAIC--PENTLLVYSFSKY 316 (546)
T ss_dssp STTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCT-TCEEEEECTTGGGSTT---CCCHHHHC--GGGEEEEEESTTT
T ss_pred CCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccC-CcEEEEeCcchhhccc---CcCHHHhC--CCCEEEEEeCccc
Confidence 88999999999999999999999999999999 788 9999999999998753 33444443 3789999999999
Q ss_pred cccccceeeEEEcCHH-HHHHHHHH-------------h-----------------------hhccCCCChHHHHHH---
Q 012124 303 FAMTGWRLGYIAGPKH-FVAACNKI-------------Q-----------------------SQFTSGASSISQKAG--- 342 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~-~~~~l~~~-------------~-----------------------~~~~~~~~~~~q~a~--- 342 (470)
+|++|+|+||++++++ +++.+.+. . .....+.+.+.|.++
T Consensus 317 ~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 317 FGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp TTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred cCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 9999999999999875 77776321 1 122346788888874
Q ss_pred --HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC-C----CCCCCHHHH
Q 012124 343 --VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG-F----GKIENSESL 415 (470)
Q Consensus 343 --~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~----~~~~~~~~l 415 (470)
.+++++ .+.|.+++++.|+++++.+.+.|. + ++.+.++.+|||+|++++........+ + ....++.++
T Consensus 397 a~~all~~---~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~ 471 (546)
T 2zy4_A 397 SLFALMDE---ADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDM 471 (546)
T ss_dssp HHHHHHCT---TCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHH
Confidence 344554 368899999999999999999996 4 566667899999999986310000000 0 000023444
Q ss_pred HHHHHHcCCEEEECCCCCCC-CCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 416 CRYLLDKAQVALVPGDAFGD-DTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 416 ~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
+.++++++||.+.||..|+. ++++||+++. +++++++++++|+++++++
T Consensus 472 l~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 472 LFRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp HHHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 44555666999999999975 4689999998 8999999999999988754
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=391.55 Aligned_cols=371 Identities=17% Similarity=0.219 Sum_probs=302.9
Q ss_pred ccccCCchHHHHHHHHHHHHhc--CCCeEEccCCCC-----CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQA--GVSVIRLAAGEP-----DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~-----~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 143 (470)
.....+.....+.....+.... +.++|+|+.|.| ++++++.+.+++.+........|++..|.++||++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 92 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKE 92 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHH
Confidence 3344455666666666655554 668999999987 667788888887765443456798899999999999999
Q ss_pred HHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
+....+.. .+++|++|+|+++++..+++++++|||+|++++|+|+++...++..|++++.+|++.++ +.+|++.|+++
T Consensus 93 ~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~ 170 (418)
T 3rq1_A 93 CFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAFQNR 170 (418)
T ss_dssp HHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHHHHH
T ss_pred HhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHHHHH
Confidence 97655532 23499999999999999999999999999999999999999999999999999996544 67999999999
Q ss_pred ccC----Cce-EEEEcCC-CCCcccCCCHHHHHHHHHHHH------hCCCEEEEEeccccccccCCCCcccccc-cCCCC
Q 012124 224 LTE----KSR-LLILCSP-SNPTGSVYPKNLLDEIARIVA------KHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMW 290 (470)
Q Consensus 224 l~~----~~~-~i~l~~p-~nPtG~~~s~~~~~~l~~~~~------~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~ 290 (470)
+++ +++ ++++++| |||||.+++.+++++|+++|+ +| |++||+||+|.++.+++....++.. .+...
T Consensus 171 l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 249 (418)
T 3rq1_A 171 VNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN-NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLP 249 (418)
T ss_dssp HHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC-EEEEEEECTTGGGSSCHHHHHGGGGGGTTCC
T ss_pred HHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC-CeEEEEecccccccCChHHHHHHHHHHHhcC
Confidence 974 566 7788999 999999999999999999999 89 9999999999998876533333332 23223
Q ss_pred Cc--eEEEeccCcccccccceeeEEEc---CHHHHHHHHHHhhhc----cCCCChHHHHHHHHHHhcCCC---ChHHHHH
Q 012124 291 ER--TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQF----TSGASSISQKAGVAALGLGYA---GGEVVSK 358 (470)
Q Consensus 291 ~~--~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~~~~~~~----~~~~~~~~q~a~~~~l~~~~~---~~~~~~~ 358 (470)
++ +|+++||||.+|++|+|+||+++ ++++++.+....... ..+++.+.|.++..+++++.. ..+++++
T Consensus 250 ~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 329 (418)
T 3rq1_A 250 KEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNC 329 (418)
T ss_dssp TTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44 68999999999999999999999 999999888765432 245889999999999986310 0234557
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
+++.++++++.+.+.|+++ |+++..+.+|||+|++++ +..++++.|. ++||.+.||. ++
T Consensus 330 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~v~~g~-----~~ 388 (418)
T 3rq1_A 330 YYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD--------------SANAICEELK-KEHIYVIALA-----NG 388 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT--------------THHHHHHHHH-HTTEECEECS-----SE
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC--------------CHHHHHHHHH-hCCEEEecCC-----CC
Confidence 7889999999999999988 888889999999998874 5678888765 5599999983 68
Q ss_pred EEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 439 IRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 439 iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+||+++. +++++++++++|+++++++.
T Consensus 389 iRis~~~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 389 IRIAACGIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp EEEEGGGSCHHHHTTHHHHHHHHHHHTT
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 9999986 99999999999999998765
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-48 Score=381.97 Aligned_cols=365 Identities=29% Similarity=0.501 Sum_probs=304.1
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++.++..++++....+.+.... +++|+|+.|.|++++++.+.+++.+++.. ...|++..|..+||+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-- 74 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEF-- 74 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHH--
T ss_pred hhhhhhhcCccHHHHHHHHHhc-----CCeEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHhc--
Confidence 3445555655555444433322 35799999999988899999999998865 567988889999999999995
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc--CCCCCccCHHhHhhhc
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKL 224 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~~~l~~~l 224 (470)
+ +++++|++|+|+++++.+++.+++++||+|++++|+|+++...++..|++++.++++ ++ ++.+|++.|++++
T Consensus 75 --~--~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~l 149 (381)
T 1v2d_A 75 --A--VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKAL 149 (381)
T ss_dssp --T--SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHHHHHTTC
T ss_pred --C--CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHHHHHHhc
Confidence 3 467899999999999999999999999999999999999999999999999999986 33 3679999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
++++++|++++|+||||.++|.+++++|+++|++| |++||+||+|.++.+ +....++..+ ..++++++.||||.++
T Consensus 150 ~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~-g~~~~~~~~~--~~~~~~~~~s~sK~~~ 225 (381)
T 1v2d_A 150 TPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYY-GERPRRLREF--APERTFTVGSAGKRLE 225 (381)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBS-SSCCCCHHHH--CTTTEEEEEEHHHHTT
T ss_pred CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEEcCcccccc-CCCCCCHHHh--cCCCEEEEeechhhcC
Confidence 88899999999999999999999999999999999 999999999999887 4434455544 2578999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||+++++++++.+........++++.+.|.++..+|+.+.. .++++++++.++++++++.+.|++. |+++..
T Consensus 226 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 303 (381)
T 1v2d_A 226 ATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLRVYV 303 (381)
T ss_dssp CGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEC
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecC
Confidence 89999999999999999988877766778899999999999986321 5678899999999999999999986 888888
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
+.+|+|+|+++++. + +. .+++++||.+.||..|+. ++++|++++.+++++++++++|+++
T Consensus 304 ~~~~~~~~~~~~~~------------~---~~-~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 304 PEGTYFLMAELPGW------------D---AF-RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRV 367 (381)
T ss_dssp CSBSSEEEEECTTC------------C---HH-HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEecChH------------h---HH-HHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHH
Confidence 88899999998742 3 43 445566999999988864 5799999999999999999999999
Q ss_pred HHhhCC
Q 012124 461 LLTLRP 466 (470)
Q Consensus 461 l~~~~~ 466 (470)
+++.+.
T Consensus 368 l~~~r~ 373 (381)
T 1v2d_A 368 VNSPRE 373 (381)
T ss_dssp C-----
T ss_pred Hhhccc
Confidence 887664
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=384.45 Aligned_cols=370 Identities=26% Similarity=0.408 Sum_probs=294.4
Q ss_pred cccccccCC-chHHHHHHHHHHHH--hcCCCeEEccCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCcCcHHHHHH
Q 012124 68 SPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSA 139 (470)
Q Consensus 68 ~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ 139 (470)
++++..+.+ .....+.+...... ..++++|+|+.|++++++++.+.+++.+++.. ....|++..|..+||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ 83 (400)
T 3asa_A 4 NPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQK 83 (400)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHH
T ss_pred chhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH
Confidence 444555544 33344444444332 24678999999999888889999999888764 24679888899999999
Q ss_pred HHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecCcCCCCCccCHH
Q 012124 140 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFLLDPK 218 (470)
Q Consensus 140 ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~~ 218 (470)
+++++. +|+ +++++|++|+|+++++.+++. ++++||+|++++|+|+++...++..|++ ++.+|++.++++..|++
T Consensus 84 la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 159 (400)
T 3asa_A 84 LSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFP 159 (400)
T ss_dssp HHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCC
T ss_pred HHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChh
Confidence 999964 465 678999999999999998765 4589999999999999999999999999 99999875555444443
Q ss_pred hHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 219 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 219 ~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
+. +++++|++++||||||.++|.+++++|+++|+++ |++||+||+|.++.+++....++..++...+++++++|
T Consensus 160 ---~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 233 (400)
T 3asa_A 160 ---ED--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINS 233 (400)
T ss_dssp ---TT--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEE
T ss_pred ---hc--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEec
Confidence 21 5789999999999999999999999999999999 99999999999987765434456555433468999999
Q ss_pred cCcccccccceeeEEEcCHHH-------HHHHHHHhhhcc-CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 370 (470)
Q Consensus 299 ~sK~~~~~G~r~G~~~~~~~~-------~~~l~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 370 (470)
|||.+|++|+|+||+++++++ ++.+........ .+++.+.|.++.++|+.+ +++++++.++++++.+
T Consensus 234 ~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l 308 (400)
T 3asa_A 234 FSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLL 308 (400)
T ss_dssp CCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHH
T ss_pred chhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHH
Confidence 999999999999999999888 666654332222 368999999999999863 5677888999999999
Q ss_pred HHHhccCCCCeecCCCceEEEeee-ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCH
Q 012124 371 VKSFGELEGVKMSEPQGAFYLFID-FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASL 447 (470)
Q Consensus 371 ~~~L~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~ 447 (470)
.+.|+++ |+++..+.+|+|+|++ ++... +..++++.|++++||.+.||..|+. ++++||++..++
T Consensus 309 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~ 376 (400)
T 3asa_A 309 RKALLAT-GFEVFGGEHAPYLWVKPTQANI-----------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKR 376 (400)
T ss_dssp HHHHHHT-TCEEEECSSSSEEEEECCCTTC-----------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCH
T ss_pred HHHHHHC-CCeeeCCCCceEEEEeccCCCC-----------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCH
Confidence 9999988 8888877788889999 87532 4557888888777999999998863 578999977799
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012124 448 TTLQAAVERIKKGLLTL 464 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~ 464 (470)
+++++++++|++++++.
T Consensus 377 e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 377 EDILAACERLQMAPALQ 393 (400)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999988754
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=381.55 Aligned_cols=367 Identities=21% Similarity=0.374 Sum_probs=309.3
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~--~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~ 142 (470)
+.+.....++....+... ..++++|+|+.|.|+.. +++.+.+++.+++... ...|++..|..+||+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~ 85 (397)
T 2zyj_A 11 GKGAGRIQASTIRELLKL-----TQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAE 85 (397)
T ss_dssp CGGGGGCCCCHHHHHHHH-----HTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHH
T ss_pred hhhhcccCchHHHHHHhh-----ccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHH
Confidence 444445555544433322 13557899999987654 5788999988887642 4678888899999999999
Q ss_pred HHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++ | +++++|++|+|+++++.+++++++++||+|++++|+|+++...++..|++++.+|.+.+ ++|++.|++
T Consensus 86 ~~----g--~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~l~~ 156 (397)
T 2zyj_A 86 WI----G--VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDALEE 156 (397)
T ss_dssp HH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHHHH
T ss_pred Hh----C--CChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHHHHH
Confidence 98 4 57789999999999999999999999999999999999999999999999999998643 389999999
Q ss_pred hccC-CceEEE-EcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC---CceEEEe
Q 012124 223 KLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW---ERTLTVN 297 (470)
Q Consensus 223 ~l~~-~~~~i~-l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~ 297 (470)
++++ ++++|+ +++||||||.+++.+++++|+++|++| |++||+||+|.++.+++....++..++. . +++++++
T Consensus 157 ~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~ 234 (397)
T 2zyj_A 157 VLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAR-EAGYPGVIYLG 234 (397)
T ss_dssp HHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCSSCCCCCHHHHHH-HHTCCCEEEEE
T ss_pred HHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeCCcccccCCCCCCCchhhhCc-ccCCCeEEEEe
Confidence 9975 788875 699999999999999999999999999 9999999999999887654455555543 3 6889999
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 376 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 376 (470)
||||.++ +|+|+||+++++++++.+........++++.+.|.++.++|+.+. .++++++++.++++++.+.+.|++
T Consensus 235 s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 311 (397)
T 2zyj_A 235 SFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGF--SERLERVRRVYREKAQAMLHALDRE 311 (397)
T ss_dssp ESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-ccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999887777777789999999999998631 167889999999999999999987
Q ss_pred CC-CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----CCCcEEEEeec-CHHHH
Q 012124 377 LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----DDTCIRISYAA-SLTTL 450 (470)
Q Consensus 377 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----~~~~iRls~~~-~~~~i 450 (470)
+| |+.+..|.+|+|+|++++... +..++++.|.++ ||.+.||..|+ .++++|++++. +++++
T Consensus 312 ~~~g~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i 379 (397)
T 2zyj_A 312 VPKEVRYTRPKGGMFVWMELPKGL-----------SAEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGI 379 (397)
T ss_dssp SCTTSEECCCSBSSEEEEECSTTC-----------CHHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHH
T ss_pred CCCCeEEccCCccEEEEEEcCCCC-----------CHHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHH
Confidence 67 688877888999999997542 678899998877 99999999885 35799999998 79999
Q ss_pred HHHHHHHHHHHHhhC
Q 012124 451 QAAVERIKKGLLTLR 465 (470)
Q Consensus 451 ~~~l~~l~~~l~~~~ 465 (470)
++++++|+++++++.
T Consensus 380 ~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 380 AEGVRRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=388.62 Aligned_cols=370 Identities=16% Similarity=0.176 Sum_probs=301.8
Q ss_pred cCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCC---CCCCCCh--HHHHHHHHHHHHc-CCCCCCCCcCcHHHHH
Q 012124 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRS 138 (470)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~~~~--~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~ 138 (470)
+.+++++...+++++..+....... ..+++|+|+.| +|+..+| +.+++++.+++.. ....|++..|.++||+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNAD--TRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHC--CCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhc--CCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Confidence 4466778888888877776555432 34578999999 6776664 8999999999887 4578999999999999
Q ss_pred HHHHHHHHHcCCCCCCC--cEEEecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCc
Q 012124 139 AICHKLKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214 (470)
Q Consensus 139 ~ia~~l~~~~g~~~~~~--~i~it~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 214 (470)
++++++....+..++++ +|++|+|+++++.+++ ..++++||+|++++|+|+++...++..|++++.+|+..++++.
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred HHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 99999976544444678 8999999999999994 4568999999999999999999999999999999985445678
Q ss_pred cCHHhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCC
Q 012124 215 LDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMW 290 (470)
Q Consensus 215 ~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~ 290 (470)
+|++.|++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ...++..+....
T Consensus 180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGESIEADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEccccccccCCcchhhHHHHHHHhcC
Confidence 99999999997 5778889999999999999999999999999999 999999999999988742 234444443346
Q ss_pred CceEEEeccCcccccccceeeEEEc---CHHHHHH----HHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMV 360 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~r~G~~~~---~~~~~~~----l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~ 360 (470)
+++++++||||.+|++|+|+||+++ ++++++. +.........+++.+.|.++..++..+.+ .++++++++
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999863 4565544 33333345566889999999998886421 046688999
Q ss_pred HHHHHHHHHHHHHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 361 KAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
++|+++++.+.+.|+++ +|+.+..|.+|+|+|+.++ ...+. .+++++||.+.|+.
T Consensus 339 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~-~~l~~~gI~v~~~~------ 396 (420)
T 4f4e_A 339 DRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT---------------SAQVD-RLREEFGIYAVSTG------ 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC---------------HHHHH-HHHHHHCEECCTTS------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC---------------HHHHH-HHHHhCCEEecCCC------
Confidence 99999999999999986 4788888899999998763 33444 45556699999852
Q ss_pred cEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 438 CIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 438 ~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
|++++. +++++++++++|++++
T Consensus 397 --Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 397 --RICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp --EEEGGGCCTTTHHHHHHHHHHHH
T ss_pred --eEEEecCCHHHHHHHHHHHHHHh
Confidence 999997 8888999999999876
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=384.38 Aligned_cols=361 Identities=20% Similarity=0.352 Sum_probs=297.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHH-----------cCCCCCCCCcCcHHHHHHHHHHHHHHcCCC--CCCCcEEEec
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIR-----------EGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVSN 161 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~--~~~~~i~it~ 161 (470)
.+|+|+.+.+.+.+ +.+.+++.+... .....|+++.|..+||+++++++.+.+|.. +++++|++|+
T Consensus 37 ~~i~l~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~ 115 (428)
T 1iay_A 37 GVIQMGLAENQLCL-DLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSSH-HHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceeeeccccchhhH-HHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence 67999998876654 477777764321 123579888899999999999999888865 7789999999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH-HHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEc
Q 012124 162 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILC 234 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~ 234 (470)
|+++++.+++++++++||+|++++|+|+++...+ ...|++++.+|.+.+++|.+|++.|++++++ ++++|+++
T Consensus 116 G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 195 (428)
T 1iay_A 116 GATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEc
Confidence 9999999999999999999999999999998755 4689999999997656678999999998853 68999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-------CCceEEEeccCccccccc
Q 012124 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-------~~~~i~i~S~sK~~~~~G 307 (470)
+||||||.++|.+++++|+++|+++ |++||+||+|.++.|++....++..+... .++++++.||||.+|++|
T Consensus 196 ~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 196 NPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHC-CeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 9999999999999999999999999 99999999999988865444455444332 478999999999999999
Q ss_pred ceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||+++ ++++++.+.+.... ++.+.+.|.++..+++...+.++++++.++.++++++.+.+.|+++ |+.+..+.
T Consensus 275 lr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 351 (428)
T 1iay_A 275 FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN 351 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred ceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC
Confidence 99999998 68888888765543 4689999999999998632113478889999999999999999988 88887777
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEee-cCHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYA-ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~-~~~~~i~~~l~~l~~~l~~ 463 (470)
+|+|+|+++++.... . ...+..++++.|++++||.+.||..|+. ++++|++++ .+++++++++++|++++++
T Consensus 352 ~g~~~~~~~~~~~~~-~----~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 352 AGLFCWMDLRPLLRE-S----TFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp SSSEEEEECGGGCSS-S----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEechhhcCC-C----chhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 899999999753100 0 0002457888888777999999988864 579999999 4999999999999999876
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
.+
T Consensus 427 ~~ 428 (428)
T 1iay_A 427 EK 428 (428)
T ss_dssp TC
T ss_pred cC
Confidence 43
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=371.17 Aligned_cols=334 Identities=22% Similarity=0.290 Sum_probs=291.1
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+++|+|+.|++++++++.+++++.+.+. ....|++..+ .+||+++++++ | +++++|++|+|+++++.+++.
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~~-~~lr~~la~~~----~--~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 29 VKEVIKLASNENPFGTPPKAIECLRQNAN-KAHLYPDDSM-IELKSTLAQKY----K--VQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CSCCEECSSCCCTTCSCHHHHHHHHHHGG-GTTSCCCTTC-HHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHH-hhccCCCCCh-HHHHHHHHHHh----C--CCcceEEECCCHHHHHHHHHH
Confidence 36789999999999899999999999876 4677866666 89999999987 3 577899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++++||+|++++|+|+++...++..|++++.+++ .++++ +|++.|++++++++++|++++||||||.++|.+++++|
T Consensus 101 ~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 101 SKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp HHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999998 34567 99999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecccccccc--CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+++| ++ |++||+||+|.++.| .+....+........+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 179 ~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~- 255 (365)
T 3get_A 179 IKGV-NE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP- 255 (365)
T ss_dssp HHTS-CT-TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT-
T ss_pred HHhC-CC-CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC-
Confidence 9998 68 999999999999875 433333333322225789999999999999999999999999999999887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
++++.+.|.++..+|+. .+++++.++.++++++.+.+.|+++ |+.+.++.++ |+|++++..
T Consensus 256 -~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~~~~~------------ 316 (365)
T 3get_A 256 -FNVSNLALKAAVAAMDD----DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTN-FITYFFDEK------------ 316 (365)
T ss_dssp -TCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECSSS------------
T ss_pred -CCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCe-EEEEECCCC------------
Confidence 45899999999999985 6889999999999999999999998 8888766555 489999753
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+..++.+.|.++ ||.+.||..|+ ++++|++++ ++++++++++.|++++
T Consensus 317 ~~~~~~~~l~~~-gi~v~~g~~~~-~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 NSTDLSEKLLKK-GIIIRNLKSYG-LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CHHHHHHHHHTT-TEECEECGGGT-CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC-CEEEEECccCC-CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 577888888765 99999999998 899999998 7889999999998876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=370.63 Aligned_cols=328 Identities=21% Similarity=0.335 Sum_probs=292.5
Q ss_pred HHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH
Q 012124 114 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE 193 (470)
Q Consensus 114 ~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~ 193 (470)
+++.+.+......|++..|..+||+++++++. .+++++|++|+|+++++.+++.+++++||+|++++|+|+++..
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~ 120 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD 120 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence 36666777778899999999999999999863 2578899999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccc
Q 012124 194 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273 (470)
Q Consensus 194 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~ 273 (470)
.++..|++++.++++.++++.+|++.|++++++++++|++++||||||.++|.+++++|+++|++| |++||+||+|+++
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~ 199 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSF 199 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCC
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 999999999999998777788999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCCh
Q 012124 274 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 353 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~ 353 (470)
.++ ..+++... .+++++++||||.+|++|+|+||+++++++++.+........++++++.|.++..+++. .+
T Consensus 200 ~~~--~~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 271 (375)
T 3op7_A 200 SEL--DVPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAH---YQ 271 (375)
T ss_dssp SSS--CCCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT---HH
T ss_pred ccc--CCCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc---cH
Confidence 765 22333332 46789999999999989999999999999999999888888888899999999998885 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 354 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
+++++.++.++++++.+.+.|++.+++.+..+.+++++|+.++... +..+++++|++++||.+.||..|
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ll~~~gi~v~~g~~~ 340 (375)
T 3op7_A 272 EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-----------PMEDFCLQLLQEHGVLLVPGNRF 340 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-----------CHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-----------CHHHHHHHHHHhCCEEEeChhhh
Confidence 7889999999999999999999888898888899988898887542 67889888876679999999999
Q ss_pred CCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 434 GDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 434 ~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.++++|++++.+.+++++++++|++++++++.
T Consensus 341 ~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 341 ERDGYVRLGFACEQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp TCTTEEEECCCSCHHHHHHHHHHHHHHHGGGC-
T ss_pred CCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999889999999999999988754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=379.65 Aligned_cols=361 Identities=20% Similarity=0.338 Sum_probs=301.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC------------CCCCCCcCcHHHHHHHHHHHHHHcC--CCCCCCcEEEe
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF------------TRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVS 160 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~------------~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~it 160 (470)
.+|+|+.+...+. ++.+.+++.+...... ..|++..|..+||+++++++.+.++ +++++++|++|
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 117 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEc
Confidence 5788888776654 6677777776543211 4698999999999999999986655 55778999999
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEE
Q 012124 161 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 233 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l 233 (470)
+|+++++..++.+++++||.|++++|+|+++...+. ..|++++.++++.++++.+|++.|++++++ ++++|++
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i 197 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 197 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999999999999999999999999999998888 789999999998777788999999999965 7899999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC---------CCceEEEeccCcccc
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM---------WERTLTVNGFSKAFA 304 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~---------~~~~i~i~S~sK~~~ 304 (470)
++||||||.++|.+++++|+++|++| |++||+||+|..+.|++....++..+..+ .+++++++||||.+|
T Consensus 198 ~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g 276 (435)
T 3piu_A 198 TNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 276 (435)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC
Confidence 99999999999999999999999999 99999999999988877655555544332 578999999999999
Q ss_pred cccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 305 MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 305 ~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
++|+|+||+++ ++++++.+.+.... +..+++.|.++.+++....+.++++++.+++++++++.+.+.|++. |+.+.
T Consensus 277 ~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 353 (435)
T 3piu_A 277 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCL 353 (435)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGGG--SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC
T ss_pred CCceeEEEEEeCCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 99999999999 56777777765543 3578899999999998632213467888999999999999999988 89988
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
.+.+|+|+|++++...... ...+..+++++|++++||.+.||..|+. ++++||+++. +++++++++++|+++
T Consensus 354 ~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 354 NGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAF 428 (435)
T ss_dssp CCCSSSEEEEECGGGSSSS-----SHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEcccccccC-----CchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 8899999999998642100 0002457888888888999999998864 5799999998 999999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
+++++
T Consensus 429 l~~~~ 433 (435)
T 3piu_A 429 VGEYY 433 (435)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98765
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=383.34 Aligned_cols=346 Identities=14% Similarity=0.162 Sum_probs=291.5
Q ss_pred CCeEEccCCCCCCCCh---HHHHHHH--HHHHHc---CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 94 VSVIRLAAGEPDFDTP---VLIAEAG--INAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~---~~~~~a~--~~~~~~---~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
...|+|+.|.|+.... +.+.+++ .+++.. ....|++..|.++||++|++++ + +++++|++|+|+++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~ 106 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL----G--VPVEQVLAGDASSL 106 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH----T--SCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh----C--CCcceEEEeCCcHH
Confidence 4679999999986542 2466666 554443 2578988899999999999998 2 68899999999999
Q ss_pred HH--HHHHHHhcC--C----------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceE
Q 012124 166 SI--LQAVLAVCS--P----------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRL 230 (470)
Q Consensus 166 al--~~~~~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~ 230 (470)
++ ++++.++++ | ||+|++++|+|+++...++..|++++.+|++.+ ++|++.|+++++ +++++
T Consensus 107 al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~ 183 (427)
T 3ppl_A 107 NIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKG 183 (427)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCCeE
Confidence 99 588888877 6 999999999999999999999999999999753 399999999994 68888
Q ss_pred EEE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCEEEEEeccccccccCCCCcc--ccccc---CCCCCceEEEeccCccc
Q 012124 231 LIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHT--SFASL---PGMWERTLTVNGFSKAF 303 (470)
Q Consensus 231 i~l-~~p~nPtG~~~s~~~~~~l~~~~-~~~~~~~iI~Dd~~~~~~~~~~~~~--~~~~~---~~~~~~~i~i~S~sK~~ 303 (470)
|++ ++||||||.++|.+++++|+++| ++| |++||+||+|.++.|++.... ++..+ .+..+++++++||||..
T Consensus 184 v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 262 (427)
T 3ppl_A 184 MWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-DFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKIT 262 (427)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTS
T ss_pred EEECCCCCCCCCccCCHHHHHHHHHHHhhcC-CCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhcc
Confidence 875 58899999999999999999999 999 999999999999888764322 34433 12358999999999995
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhcc----CC
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE----LE 378 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~ 378 (470)
++|+|+||+++++++++.+........++++.+.|.++..++.. +.+ .+++++.++.|+++++.+.+.|.+ ++
T Consensus 263 -~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~ 340 (427)
T 3ppl_A 263 -LAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGV-RAVMRKHAASLAPKFNKVLEILDSRLAEYG 340 (427)
T ss_dssp -CTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred -CcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 69999999999999999999988888889999999999999986 333 678899999999999999888865 33
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTTLQ 451 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~i~ 451 (470)
++.+..|.+|+|+|+++++. +..++.+.|.+ +||.+.| |..|. .++++||+++. ++++++
T Consensus 341 ~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~~-~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~ 407 (427)
T 3ppl_A 341 VAQWTVPAGGYFISLDVVPG------------TASRVAELAKE-AGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELE 407 (427)
T ss_dssp CCEECCCSBSSCEEEECSTT------------CHHHHHHHHHH-TTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHH
T ss_pred ceEEeCCCccEEEEEECCcc------------hHHHHHHHHHH-CCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHH
Confidence 57888899999999999864 57788877654 5999999 55554 35799999998 899999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
+++++|+++++++
T Consensus 408 ~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 408 VAMDGVATCVLLA 420 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=377.10 Aligned_cols=352 Identities=19% Similarity=0.311 Sum_probs=287.1
Q ss_pred CCCeEEccCCCCCCCCh--HHHHHHHHHHHHcC-----CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 93 GVSVIRLAAGEPDFDTP--VLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~--~~~~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
++++|+|+.|.|+..++ +.+.+++.+.+.+. ...|+++.|.++||+++++++.+.+|+.+++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35789999999987553 56778888776543 247999999999999999999998999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----eEEEc-CCCCCChHHHHHH------cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 166 SILQAVLAVCSPGD-----EVIIP-APFWVSYPEMARI------ADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 166 al~~~~~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~------~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
++++++++++++|| +|+++ +|+|+++...+.. .+..+..++.+. .++.+|++.|+ ++++++++++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~~~~~v~~ 186 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGEETGMICV 186 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCTTEEEEEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cccCceEEEE
Confidence 99999999999987 89996 9999988766532 344555555421 24668999998 7778999999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 313 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~ 313 (470)
++||||||.++|.+++++|+++|++| |++||+||+|+.+... ....... ....+++++++|||| ++++|+|+||+
T Consensus 187 ~~p~NptG~~~~~~~~~~l~~~a~~~-~~~li~De~~~~~~~~-~~~~~~~--~~~~~~~i~~~s~sK-~~~~G~r~G~~ 261 (417)
T 3g7q_A 187 SRPTNPTGNVITDEELMKLDRLANQH-NIPLVIDNAYGVPFPG-IIFSEAR--PLWNPNIILCMSLSK-LGLPGSRCGII 261 (417)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTTTC-CBCSCCC--CCCCTTEEEEEESGG-GTCTTSCCEEE
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEeCCCcccccc-ccccccc--cCCCCCEEEEEechh-ccCCCcceEEE
Confidence 99999999999999999999999999 9999999999863211 1011111 112578999999999 56799999999
Q ss_pred EcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH-HHHHHHHHHHHHHHHhcc-CC--CCeecCCCceE
Q 012124 314 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAF 389 (470)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~ 389 (470)
++++++++.+........++++++.|.++..+++.+.+ .++.++ +++.|+++++.+.+.|.+ ++ ++.+..|.+|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 340 (417)
T 3g7q_A 262 IANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAI 340 (417)
T ss_dssp ECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSS
T ss_pred EeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcce
Confidence 99999999999988888888999999999999998654 555555 788899999999998876 55 47888889999
Q ss_pred EEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 390 YLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 390 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---------~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
|+|++++. .. +..++++.|.+ +||.+.||..|+. ++++||+++.+++++++++++|++
T Consensus 341 ~~~~~~~~~~~-----------~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 341 FLWLWFKDLPI-----------TTELLYQRLKA-RGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAE 408 (417)
T ss_dssp EEEEECTTCSS-----------CHHHHHHHHHH-TTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCC-----------CHHHHHHHHHH-CCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999986 22 67889888855 5999999998864 468999999999999999999999
Q ss_pred HHHhhC
Q 012124 460 GLLTLR 465 (470)
Q Consensus 460 ~l~~~~ 465 (470)
+++++.
T Consensus 409 ~l~~~~ 414 (417)
T 3g7q_A 409 EIERAW 414 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=378.04 Aligned_cols=351 Identities=16% Similarity=0.126 Sum_probs=284.5
Q ss_pred HHHHHhcC-CCeEEccCCCC-CCCC----hHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE
Q 012124 86 ATALAQAG-VSVIRLAAGEP-DFDT----PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 158 (470)
Q Consensus 86 ~~~~~~~~-~~~i~l~~g~~-~~~~----~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 158 (470)
.......+ +++|+|+.|.| +... .+.+.+++.+.... ...+|.+..|.++||+++++++.+.+|..+++++|+
T Consensus 19 ~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~ 98 (401)
T 7aat_A 19 TEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYV 98 (401)
T ss_dssp HHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred HHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceE
Confidence 33333333 35899999997 6543 24688888877663 678898889999999999999988778777799998
Q ss_pred E--ecChHHHHHHHHHHhc---CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceE
Q 012124 159 V--SNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRL 230 (470)
Q Consensus 159 i--t~g~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~ 230 (470)
+ |+|+++++.+++..+. +|||+|++++|+|+++...++..|++++.+|++.++++++|++.+++.++ +++++
T Consensus 99 ~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 178 (401)
T 7aat_A 99 TVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSII 178 (401)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEE
T ss_pred EEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEE
Confidence 7 9999999998887664 89999999999999999999999999999999765667899996666553 57888
Q ss_pred EEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceEEEeccCcccccccc
Q 012124 231 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 231 i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
+++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ...++..+....+++|+++||||.+|++|+
T Consensus 179 v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~ 257 (401)
T 7aat_A 179 LLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE 257 (401)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccC
Confidence 99999999999999999999999999999 999999999999887642 122333332235789999999999999999
Q ss_pred eeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 309 RLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 309 r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
|+||+++ +++ +...+.........+++.+.|.++..++.++.+. .+++++++++++++++.+.+.|+++
T Consensus 258 RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 258 RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999886 555 5566666666677788889999988888763210 4568888999999999999999886
Q ss_pred --CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHH
Q 012124 378 --EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAV 454 (470)
Q Consensus 378 --~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l 454 (470)
+++.+..|.+|+|+|+.++ . +++..|++++||.+.|+ +|++++. ++++|++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~ll~~~gi~v~~~--------~Ris~~~~~~~~i~~~~ 393 (401)
T 7aat_A 338 SSHNWQHITDQIGMFCFTGLK---------------P-EQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLA 393 (401)
T ss_dssp CCSCCHHHHHCCSSEEECCCC---------------H-HHHHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHH
T ss_pred CCCCCceecCCcceEEecCCC---------------H-HHHHHHHHhCCEeccCC--------CeEEeccCChhhHHHHH
Confidence 2477778899999997653 3 33466767779999875 6999987 667799999
Q ss_pred HHHHHHH
Q 012124 455 ERIKKGL 461 (470)
Q Consensus 455 ~~l~~~l 461 (470)
++|++++
T Consensus 394 ~~l~~~~ 400 (401)
T 7aat_A 394 HAIHQVT 400 (401)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999876
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=376.69 Aligned_cols=371 Identities=16% Similarity=0.236 Sum_probs=300.7
Q ss_pred chHHHHHHHHHHHHhcCCCeE-EccCCCCCCCCh--HHHHHHHHHHHHc-------C-----CCCCCCCcCcHHHHHHHH
Q 012124 77 SKTVAITDQATALAQAGVSVI-RLAAGEPDFDTP--VLIAEAGINAIRE-------G-----FTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i-~l~~g~~~~~~~--~~~~~a~~~~~~~-------~-----~~~y~~~~g~~~lr~~ia 141 (470)
..+........+... .+++| +|+.|.|+..++ +.+.+++.+.+.+ . ...|++..|.++||++++
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia 93 (444)
T 3if2_A 15 TGISQLMDDLGDALK-SDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALV 93 (444)
T ss_dssp CHHHHHHHHHHHHHH-SSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHhhhc-CchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHH
Confidence 444444443333322 36789 999999997543 5677777777655 3 257999999999999999
Q ss_pred HHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--------------eEEEc-CCCCCChHH------HHHHcCC
Q 012124 142 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--------------EVIIP-APFWVSYPE------MARIADA 200 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd--------------~Vlv~-~p~y~~~~~------~~~~~g~ 200 (470)
+++.+.+|+.+++++|++|+|+++++.+++++++++|| +|++. +|+|+.+.. .+...|.
T Consensus 94 ~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~ 173 (444)
T 3if2_A 94 GFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP 173 (444)
T ss_dssp HHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC
T ss_pred HHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc
Confidence 99999999999999999999999999999999999998 78775 999999876 3456788
Q ss_pred EEEEecCcCCC---CCccCHHhHhhh---ccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc
Q 012124 201 TPVILPTRISE---NFLLDPKVLESK---LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274 (470)
Q Consensus 201 ~~~~v~~~~~~---~~~~d~~~l~~~---l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~ 274 (470)
.++.++++.++ ++.+|++.|+++ +++++++|++++||||||.++|.+++++|+++|++| |++||+||+|+.+.
T Consensus 174 ~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~ 252 (444)
T 3if2_A 174 HIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLIIDNAYGMPF 252 (444)
T ss_dssp EEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTT
T ss_pred eEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC-CCEEEEECCCCCcc
Confidence 99888886422 357999999998 678899999999999999999999999999999999 99999999998632
Q ss_pred cCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChH
Q 012124 275 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 354 (470)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~ 354 (470)
.. ....... ....+++++++||||. +++|+|+||+++++++++.+........++++++.|.++..+++.+.+ .+
T Consensus 253 ~~-~~~~~~~--~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~ 327 (444)
T 3if2_A 253 PN-IIYSDAH--LNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQ 327 (444)
T ss_dssp TC-CBCSCCC--CCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HH
T ss_pred cc-ccccccc--ccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hH
Confidence 11 0001111 1125789999999997 579999999999999999999888878888999999999999997554 45
Q ss_pred HHHH-HHHHHHHHHHHHHHHhcc-CC--CCeecCCCceEEEeeeccC-ccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 355 VVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 355 ~~~~-~~~~~~~~~~~l~~~L~~-~~--g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
+.++ +++.|+++++.+.+.|.+ ++ ++.+..|.+|+|+|++++. .. +..++++.|.+ +||.+.|
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~l~~~l~~-~gi~v~~ 395 (444)
T 3if2_A 328 LSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI-----------STLDLYERLKA-KGTLIVP 395 (444)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-----------CHHHHHHHHHH-TTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC-----------CHHHHHHHHHH-CCeEEec
Confidence 5555 788899999999888876 55 4577778999999999985 22 67889888765 5999999
Q ss_pred CCCCCCC----------CcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 430 GDAFGDD----------TCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 430 g~~f~~~----------~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
|..|+.. +++||+++.++++|++++++|+++++++..
T Consensus 396 g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 396 SEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence 9988532 589999999999999999999999987653
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=364.28 Aligned_cols=336 Identities=18% Similarity=0.241 Sum_probs=292.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.++++|+|+.|.+++++|+.+++++.+.+.. ...| +..+..+||+++++++ | +++++|++|+|+++++.+++
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~i~~~~g~~~a~~~~~ 85 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVK-ANRY-AKNEILMLGNKLAAHH----Q--VEAPSILLTAGSSEGIRAAI 85 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTSC-CHHHHHHHHHHHHHHT----T--SCGGGEEEESHHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhh-CcCC-CCCchHHHHHHHHHHh----C--CChHHEEEeCChHHHHHHHH
Confidence 4567899999999999999999999988764 6678 6678899999999986 3 57789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcCCCCCcccCCCHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
++++++||+|++++|+|+++...++..|++++.++++. ++.+|++.|+++++ +++++|++++||||||.+++.+++
T Consensus 86 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l 163 (354)
T 3ly1_A 86 EAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVI 163 (354)
T ss_dssp HHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHH
T ss_pred HHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHH
Confidence 99999999999999999999999999999999999864 46799999999998 789999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 329 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 329 (470)
++|+++| ++ |++||+||+|.++.+++.....+...+...+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 164 ~~l~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 241 (354)
T 3ly1_A 164 EPWIASK-PA-NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG 241 (354)
T ss_dssp HHHHHTC-CT-TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC
T ss_pred HHHHHhC-CC-CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC
Confidence 9999999 89 999999999999887654333333333322889999999999999999999999999999998877655
Q ss_pred ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 330 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 330 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
++++++.|.++.++|+. .+++++.+++++++++.+.+.|+++ |+.+.++ .|.|+|++++.
T Consensus 242 --~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~-~~~~~~~~~~~------------ 301 (354)
T 3ly1_A 242 --EKINFSGVDAALASMND----SAFITYSKKSNDVSRQILLKALEDL-KLPYLPS-EGNFVFHQLVV------------ 301 (354)
T ss_dssp --SCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC-CSSEEEEECSS------------
T ss_pred --CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeECCC-CceEEEEECCC------------
Confidence 57899999999999985 5889999999999999999999988 7877655 45568999874
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
+..++.+.|.++ ||.+. |..++.++++|++++ +++++++++++|++++++
T Consensus 302 -~~~~~~~~l~~~-gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 302 -PLKDYQTHMADA-GVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -CHHHHHHHHHHT-TEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHC-CEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 577888888765 99998 776667889999988 788999999999999875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=393.74 Aligned_cols=360 Identities=21% Similarity=0.271 Sum_probs=290.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH-cC-CCCC-CCcEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE-NG-LSYT-PDQILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~-~g-~~~~-~~~i~it~g~~~al~~~~ 171 (470)
++|+|+.|.|+.+ ++.+++++.+.+.. ...|.+..|..++|+++++++... .+ +.+. +++|++|+|+++++.+++
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~ 181 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAF 181 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHH
Confidence 3588999999986 56666666666654 233337889999999999999765 34 5555 479999999999999999
Q ss_pred HH-----hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC--CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 172 LA-----VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 172 ~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
.+ ++++||+|++++|+|+++...++..|++++.++++. ++++.+|++.|++++++++++|++++||||||.++
T Consensus 182 ~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~ 261 (533)
T 3f6t_A 182 HSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEF 261 (533)
T ss_dssp HHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCC
T ss_pred HHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCcccc
Confidence 98 789999999999999999999999999999999875 56788999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-hCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-----
Q 012124 245 PKNLLDEIARIVA-KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH----- 318 (470)
Q Consensus 245 s~~~~~~l~~~~~-~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~----- 318 (470)
|.+++++|+++|+ +| +++||+||+|+++.++. .++.... .+++++++||||.+|++|+|+||++++++
T Consensus 262 ~~~~l~~l~~la~~~~-~~~li~De~y~~~~~~~---~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 262 DTNALNAIKQAVEKNP-KLMIISDEVYGAFVPNF---KSIYSVV--PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDD 335 (533)
T ss_dssp CHHHHHHHHHHHHHCT-TCEEEEECTTGGGSTTC---CCHHHHS--GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHH
T ss_pred CHHHHHHHHHHHHhCC-CCEEEEcCCccccccCc---cCHhhcC--CCCEEEEecCcccCCCcccceEEEEECcHHHHHH
Confidence 9999999999999 68 99999999999987642 3444443 47899999999999999999999999876
Q ss_pred HHHHH--------------------------------HHHhhhccCCCChHHHHH----HHHHHhc----CCCChHHHHH
Q 012124 319 FVAAC--------------------------------NKIQSQFTSGASSISQKA----GVAALGL----GYAGGEVVSK 358 (470)
Q Consensus 319 ~~~~l--------------------------------~~~~~~~~~~~~~~~q~a----~~~~l~~----~~~~~~~~~~ 358 (470)
+++.+ .........+++.+.|.+ +..+|.. +.. .+++++
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~-~~~~~~ 414 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSD-DPYIDI 414 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTB-CHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccch-HHHHHH
Confidence 43322 334445566788889988 4555641 222 689999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC-----CCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG-----FGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
+++.|+++++.+.+.|. + ++.+..+.+++|+|++++......... ..+..+..+++.+|++++||.+.||..|
T Consensus 415 ~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f 492 (533)
T 3f6t_A 415 ARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGF 492 (533)
T ss_dssp HHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEE
T ss_pred HHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCccc
Confidence 99999999999999997 6 688888999999999986410000000 0000156678888887889999999998
Q ss_pred CC-CCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 434 GD-DTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 434 ~~-~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+. ++++|||++. +++++++++++|+++++++.
T Consensus 493 ~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 493 GAKPGELRVSQANLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp CSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHH
Confidence 86 5799999996 99999999999999988753
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=400.60 Aligned_cols=351 Identities=24% Similarity=0.373 Sum_probs=306.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++++|+.|+|++++|+.+.+++.+++......|++. ..++|+++++++.+.+|+++++++|++|+|+++++.++++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 109 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF 109 (392)
Confidence 679999999999889999999999887666778654 889999999999988888788899999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++||+|++++|+|+++...++..|++++.++++.+ ++|.+|++.|++.++ ++++++++++||||||.+++.+++++|
T Consensus 110 ~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l 189 (392)
T 3b1d_A 110 TKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQI 189 (392)
Confidence 999999999999999999999999999999998533 347789999999997 688999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCC-CCceEEEeccCcccccccceeeEEEcCH-HHHHHHHHHhhhc
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF 330 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~ 330 (470)
+++|++| |++||+||+|.++.+++....++..++.. .+++++++||||.+|++|+|+||+++++ ++++.+......+
T Consensus 190 ~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 268 (392)
T 3b1d_A 190 GHLCQKH-HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN 268 (392)
Confidence 9999999 99999999999998876555666666432 5789999999999998999999999975 4888888776665
Q ss_pred cC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCc-cCCcccCCC
Q 012124 331 TS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY-YGSEAEGFG 407 (470)
Q Consensus 331 ~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~ 407 (470)
++ +++++.|.++.++|+. ..++++++++.++++++.+.+.|++ ++++.+..+.++|++|++++.. .
T Consensus 269 ~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 337 (392)
T 3b1d_A 269 NHHEVSSLGYIATETAYRY---GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGL-------- 337 (392)
Confidence 43 5688999999888875 2578899999999999999999988 7889888899999999998752 1
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|++++||.+.||..|+. ++++||+++.+++++++++++|+++++
T Consensus 338 ---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 338 ---TDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 5667888887566999999998873 579999999988999999999998875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=359.93 Aligned_cols=332 Identities=19% Similarity=0.277 Sum_probs=286.3
Q ss_pred CCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 93 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 93 ~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
.+++|+|+.|++++++++.+.+++.+.+. ....| +..+..++|+++++++. +++++|++|+|+++++.++++
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y-~~~~~~~lr~~la~~~~------~~~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 31 LTKITKLSSNENPLGTSKKVAAIQANSSV-ETEIY-PDGWASSLRKEVADFYQ------LEEEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CSCCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC-----CHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcC-CCcchHHHHHHHHHHhC------CChhhEEEeCCHHHHHHHHHH
Confidence 45889999999999889999999888653 35667 66789999999999974 577899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++++||+|++++|+|+++...++..|++++.+++++ ++.+|++.+++++++++++|++++||||||.+++.+++.+|
T Consensus 103 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 103 VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999974 46699999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
+++|++ |+++|+||+|+++.+ +.. .+........+++++++||||.+|++|+|+||+++++++++.+..... .+
T Consensus 181 ~~~~~~--~~~li~De~~~~~~~-~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~--~~ 254 (363)
T 3ffh_A 181 LDRVPS--DVLVVLDEAYIEYVT-PQP-EKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP--PF 254 (363)
T ss_dssp HTTSCT--TSEEEEECTTGGGCS-SCC-CCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC--SC
T ss_pred HHhCCC--CcEEEEeCchHhhcC-ccc-cCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC--CC
Confidence 988764 799999999999877 432 233333333689999999999999999999999999999999888765 55
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+++.+.|.++.++|+. .+++++.++.++++++.+.+.|++++|+.+.++. +.|+|++++. +.
T Consensus 255 ~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~~~~~~~-------------~~ 316 (363)
T 3ffh_A 255 NTTSIGQKLAIEAIKD----QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPAN-GNFVLIDLGI-------------EA 316 (363)
T ss_dssp CCBHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCC-SSEEEEECSS-------------CH
T ss_pred CCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCC-CeEEEEECCC-------------CH
Confidence 7899999999999985 6889999999999999999999986689887655 4558999874 57
Q ss_pred HHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.++.+.|.++ ||.+.||..|+.++++|++++ ++++++++++.|+++
T Consensus 317 ~~~~~~l~~~-gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 317 GTIFSYLEKN-GYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp HHHHHHHHHT-TEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHh
Confidence 7888888765 999999999988899999998 888999999999875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=375.32 Aligned_cols=345 Identities=15% Similarity=0.201 Sum_probs=290.3
Q ss_pred CeEEccCCCCC---CCChHHHHHHHH--HHHHcC--CCCC-CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPD---FDTPVLIAEAGI--NAIREG--FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~---~~~~~~~~~a~~--~~~~~~--~~~y-~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
..|+|+.|.|+ ++.|+.+.+++. +.+..+ ...| ++..|.++||+++++++ + +++++|++|+|++++
T Consensus 26 ~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~----~--~~~~~i~~t~G~~~a 99 (423)
T 3ez1_A 26 LNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL----D--VKAENVLVWNNSSLE 99 (423)
T ss_dssp CCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT----T--SCGGGEEECSSCHHH
T ss_pred ceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh----C--CChhhEEEeCCcHHH
Confidence 56999999999 666777888775 444332 4789 88899999999999997 3 578899999999999
Q ss_pred HH--HHHHHhcC--C---------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEE
Q 012124 167 IL--QAVLAVCS--P---------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLL 231 (470)
Q Consensus 167 l~--~~~~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i 231 (470)
+. ++++++++ | ||+|++++|+|+++...++..|++++.+|++.+ ++|+|.|++++ ++++++|
T Consensus 100 l~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~~v 176 (423)
T 3ez1_A 100 LQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD---GPDVDAVERLAGTDPSVKGI 176 (423)
T ss_dssp HHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHHHHHHSCTTEEEE
T ss_pred HHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC---CCCHHHHHHHHhhCCCceEE
Confidence 97 88888887 8 599999999999999999999999999999753 39999999999 5789988
Q ss_pred EE-cCCCCCcccCCCHHHHHHHHHHH-HhCCCEEEEEeccccccccCC-C--Cccccccc---CCCCCceEEEeccCccc
Q 012124 232 IL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAP-A--THTSFASL---PGMWERTLTVNGFSKAF 303 (470)
Q Consensus 232 ~l-~~p~nPtG~~~s~~~~~~l~~~~-~~~~~~~iI~Dd~~~~~~~~~-~--~~~~~~~~---~~~~~~~i~i~S~sK~~ 303 (470)
++ ++||||||.+++.+++++|+++| ++| |++||+||+|..+.|.+ . ...++..+ ....+++++++||||.+
T Consensus 177 ~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 255 (423)
T 3ez1_A 177 LFVPTYSNPGGETISLEKARRLAGLQAAAP-DFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKIT 255 (423)
T ss_dssp EECSSSCTTTCCCCCHHHHHHHHTCCCSST-TCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTS
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHhcc-CCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhc
Confidence 75 68999999999999999999999 999 99999999999766644 2 22344433 12358999999999995
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHhcc----C
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDFLVKSFGE----L 377 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 377 (470)
++|+|+||+++++++++.+........++++.+.|.++..+++. +.+ .+++++.++.|+++++.+.+.|.+ +
T Consensus 256 -~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (423)
T 3ez1_A 256 -FAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLMRDHAAIIAPKFRAVDEVLRAELGEG 333 (423)
T ss_dssp -CSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -cCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 69999999999999999999988888889999999999999986 443 678888999999998888877755 4
Q ss_pred C-CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-CCCCC-----CCCcEEEEeec-CHHH
Q 012124 378 E-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP-GDAFG-----DDTCIRISYAA-SLTT 449 (470)
Q Consensus 378 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-g~~f~-----~~~~iRls~~~-~~~~ 449 (470)
+ ++.+..|.+|+|+|++++.. +..++.+.|. ++||.+.| |..|+ .++++||+++. ++++
T Consensus 334 ~~~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~-~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~ 400 (423)
T 3ez1_A 334 GEYATWTLPKGGYFISLDTAEP------------VADRVVKLAE-AAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEE 400 (423)
T ss_dssp TSSEEECCCSBSSCEEEEESSS------------CHHHHHHHHH-HTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHH
T ss_pred CCceEEeCCCccEEEEEECCCC------------cHHHHHHHHH-HCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHH
Confidence 2 37778889999999999864 5667777665 55999999 66665 25799999987 9999
Q ss_pred HHHHHHHHHHHHHhh
Q 012124 450 LQAAVERIKKGLLTL 464 (470)
Q Consensus 450 i~~~l~~l~~~l~~~ 464 (470)
+++++++|+++++++
T Consensus 401 i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 401 VRTAMQVVAACIRLA 415 (423)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-46 Score=372.13 Aligned_cols=369 Identities=16% Similarity=0.145 Sum_probs=296.7
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-C----CCChHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-D----FDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAI 140 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~----~~~~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~i 140 (470)
..++...+++++..+.....+. .++++|+|+.|.| + ..+++.+.+++.+.+.+ ....|++..|..+||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 6 FAEVPQAQPVLVFKLIADFRED--PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp TTTCCCCCCCHHHHHHHHHHTC--CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred hhhCcccCCchHHHHHHHHhhc--CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 3445666677666665544422 4678999999986 3 23468899999888732 456798899999999999
Q ss_pred HHHHHHHcCCCCCCCcEEE--ecChHHHHHHHHH--HhcCCC-----CeEEEcCCCCCChHHHHHHcCCE-EEEecCcCC
Q 012124 141 CHKLKEENGLSYTPDQILV--SNGAKQSILQAVL--AVCSPG-----DEVIIPAPFWVSYPEMARIADAT-PVILPTRIS 210 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~i~i--t~g~~~al~~~~~--~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~ 210 (470)
++++...+|+.+++++|++ |+|++++++++++ .++++| |+|++++|+|+++...++..|++ ++.++++.+
T Consensus 84 a~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 163 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDT 163 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEET
T ss_pred HHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecC
Confidence 9999765665567899999 9999999999964 456899 99999999999999999999999 999998655
Q ss_pred CCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC--CCcccccc
Q 012124 211 ENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFAS 285 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~--~~~~~~~~ 285 (470)
+++.+|++.|++++++ +++++++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++ ....++..
T Consensus 164 ~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~ 242 (412)
T 1ajs_A 164 EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIRY 242 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcccccccCCcccccchHHHH
Confidence 6678999999998864 667788899999999999999999999999999 99999999999988764 12234443
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEc---CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCC----CChH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGE 354 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~ 354 (470)
+....+++|++.||||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++.++|+.+. + ++
T Consensus 243 ~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~ 321 (412)
T 1ajs_A 243 FVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEW-TG 321 (412)
T ss_dssp HHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHH-HH
T ss_pred HhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHH-HH
Confidence 432357899999999999977999999999 887 44445554444444569999999999998631 1 35
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC
Q 012124 355 VVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 431 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~ 431 (470)
+++++++.++++++++.+.|++++ ++.+..+.+|+|+|+.+ + .+++..+++++||.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~l~~~gv~v~~~- 384 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL---------------N-PKQVEYLINQKHIYLLPS- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC---------------C-HHHHHHHHHTTCEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCC---------------C-HHHHHHHHHhCCEEecCC-
Confidence 788999999999999999999873 47777888999999765 3 244555666779999884
Q ss_pred CCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 432 AFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 432 ~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
+|++++. +++++++++++|+++++++
T Consensus 385 -------~Ris~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 385 -------GRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp -------SEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -------cEEEeeeCCHHHHHHHHHHHHHHHHhc
Confidence 5999996 8899999999999998764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=358.36 Aligned_cols=322 Identities=21% Similarity=0.335 Sum_probs=271.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++|+|+.|.+++++|+.+ + + .....|+++ +..+||+++++++ | +++++|++|+|++++++++++++
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~-~~~~~Y~~~-~~~~lr~~la~~~----~--~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----Q-QTLNRYPEC-QPKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----C-CCTTSCCCS-SCHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--h----h-hhhccCCCc-cHHHHHHHHHHHh----C--CChHHEEEcCCHHHHHHHHHHHH
Confidence 579999999988887665 1 2 346789554 6899999999997 3 46789999999999999999999
Q ss_pred cCCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 ~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+++| |+|++++|+|+++...++..|++++.+|++ +++.+|++.++++++ ++++|++++||||||.++|.+++++|+
T Consensus 96 ~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~ 172 (356)
T 1fg7_A 96 CEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL 172 (356)
T ss_dssp CCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred hCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999 999999999999999999999999999986 356799999999998 899999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++|+ + |++||+||+|.++.. ..++..+....+++++++||||.+|++|+|+||+++++++++.+......+ +
T Consensus 173 ~~~~-~-~~~li~De~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~ 244 (356)
T 1fg7_A 173 ELTR-G-KAIVVADEAYIEFCP----QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY--P 244 (356)
T ss_dssp HHHT-T-TCEEEEECTTGGGSG----GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--C
T ss_pred HhCC-C-CCEEEEEccchhhcC----CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC--C
Confidence 9999 9 999999999998652 133444433357899999999999999999999999999999988766543 6
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
.+.+.|.++.++|++.. .+++++.++.++++++.+.+.|++++++....|.+++|+|++++ +..
T Consensus 245 ~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 308 (356)
T 1fg7_A 245 LSTPVADIAAQALSPQG--IVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------ASS 308 (356)
T ss_dssp SCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------THH
T ss_pred CCHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--------------CHH
Confidence 89999999999997521 12488999999999999999999886543344567788999986 456
Q ss_pred HHHHHHHHcCCEEEEC-CCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVP-GDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~p-g~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
++++.|. ++||.+.| |..|+.++++|++++ +++++++++++|++
T Consensus 309 ~l~~~L~-~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 309 AVFKSLW-DQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHHH-HTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHT
T ss_pred HHHHHHH-HCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHh
Confidence 7888885 55999999 888887789999998 57889998888865
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=368.36 Aligned_cols=363 Identities=18% Similarity=0.163 Sum_probs=289.6
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCC---CCCCCCh--HHHHHHHHH-HHHc-CCCCCCCCcCcHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGIN-AIRE-GFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~~~~--~~~~~a~~~-~~~~-~~~~y~~~~g~~~lr~~ia~~ 143 (470)
+...++.....+...... ...+++|+|+.| +|+..+| +.+++++.+ ++.. ....|++..|..++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 82 (397)
T 3fsl_A 5 VDAYAGDPILTLMERFKE--DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPL 82 (397)
T ss_dssp CCCCCCCHHHHHHHHHHT--CCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHhc--CCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHH
Confidence 334455555444333321 234478999999 5665554 899999999 8875 467898889999999999999
Q ss_pred HHHHcCCCCCCC--cEEEecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHh
Q 012124 144 LKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 219 (470)
Q Consensus 144 l~~~~g~~~~~~--~i~it~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 219 (470)
+....+..++++ +|++|+|+++++.+++ ..++++||+|++++|+|+++...++..|++++.+++..++++.+|++.
T Consensus 83 ~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 162 (397)
T 3fsl_A 83 LFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFND 162 (397)
T ss_dssp HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHH
T ss_pred HhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHH
Confidence 976544444778 9999999999999995 456799999999999999999999999999999999655677899999
Q ss_pred Hhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC-CCcccccccCCCCCceEE
Q 012124 220 LESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLT 295 (470)
Q Consensus 220 l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 295 (470)
|++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ....++..+....+++++
T Consensus 163 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (397)
T 3fsl_A 163 LLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALV 241 (397)
T ss_dssp HHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEE
T ss_pred HHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchhhccCcccccHHHHHHHhcCCCEEE
Confidence 999997 5678888899999999999999999999999999 99999999999998863 233444444333689999
Q ss_pred EeccCcccccccceeeEEEc---CHHHHHHHH-H---HhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHH
Q 012124 296 VNGFSKAFAMTGWRLGYIAG---PKHFVAACN-K---IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRE 365 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~---~~~~~~~l~-~---~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~ 365 (470)
++||||.+|++|+|+||+++ .+++++.+. . .......+++.+.|.++..++..+.+ ..++++++++.+++
T Consensus 242 ~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 321 (397)
T 3fsl_A 242 SNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILA 321 (397)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 456555443 2 22234456688999999988885321 04678899999999
Q ss_pred HHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 366 RRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 366 ~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+++.+.+.|++++ |+.+..+.+|+|+|+.++ ...+ ..+++++||.+.||. |++
T Consensus 322 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~l~~~gi~v~~g~--------Ris 377 (397)
T 3fsl_A 322 MRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------AAQV-DRLREEFGVYLIASG--------RMC 377 (397)
T ss_dssp HHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------HHHH-HHHHHTTCEECCTTC--------EEE
T ss_pred HHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------HHHH-HHHHHhCCEEECCCC--------eEE
Confidence 9999999999864 688888889999998763 3344 445566799999974 999
Q ss_pred eec-CHHHHHHHHHHHHHH
Q 012124 443 YAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 443 ~~~-~~~~i~~~l~~l~~~ 460 (470)
++. +++++++++++|+++
T Consensus 378 ~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 378 VAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp GGGCCTTTHHHHHHHHHHH
T ss_pred EEecCHhhHHHHHHHHHhh
Confidence 998 888899999999875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=371.52 Aligned_cols=369 Identities=15% Similarity=0.115 Sum_probs=291.2
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-CC----CChHHHHHHHHH-HHHc-CCCCCCCCcCcHHHHHHHH
Q 012124 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DF----DTPVLIAEAGIN-AIRE-GFTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~----~~~~~~~~a~~~-~~~~-~~~~y~~~~g~~~lr~~ia 141 (470)
.++...++.+...+....... .++++|+|+.|.| +. .+++.+.+++.+ .+.. ....|++..|..+||++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia 83 (412)
T 1yaa_A 6 NNIELLPPDALFGIKQRYGQD--QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAA 83 (412)
T ss_dssp TTCCCCCCCTTHHHHHHHHTC--CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHH
T ss_pred ccCcccCCCcHHHHHHHHhcC--CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHH
Confidence 445556666555554433221 4567899999986 33 346889999988 7754 3467988899999999999
Q ss_pred HHHHHHcCCCCCCCcEEE--ecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 142 HKLKEENGLSYTPDQILV--SNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~i--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
+++.+.+|+.+++++|++ |+|+++++.+++ ..++.+||+|++++|+|+++...++..|++++.+++..++++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 163 (412)
T 1yaa_A 84 KIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDL 163 (412)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECH
T ss_pred HHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCH
Confidence 999766676667899999 999999999884 3445799999999999999999999999999999983233577999
Q ss_pred HhHhhhccCC--ceEE-EEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC--CCcccccccCCCCC-
Q 012124 218 KVLESKLTEK--SRLL-ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWE- 291 (470)
Q Consensus 218 ~~l~~~l~~~--~~~i-~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~--~~~~~~~~~~~~~~- 291 (470)
+.|+++++++ .+++ ++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ....++..+....+
T Consensus 164 ~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 1yaa_A 164 NGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCcccchhHHHHHHHhcCCC
Confidence 9999998643 3444 4599999999999999999999999999 99999999999988764 12223333322124
Q ss_pred --ceEEEeccCcccccccceeeEEE--c-----CHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHH
Q 012124 292 --RTLTVNGFSKAFAMTGWRLGYIA--G-----PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEV 355 (470)
Q Consensus 292 --~~i~i~S~sK~~~~~G~r~G~~~--~-----~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~ 355 (470)
++++++||||.+|++|+|+||++ + +++ +++.+.........+++.+.|.++.++|+.+.+ .+++
T Consensus 243 ~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 322 (412)
T 1yaa_A 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD 322 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999997799999998 7 566 777777755555556789999999999986320 0357
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
++++++.++++++.+.+.|++++ ++++..+.+|+|+|+.+ +...+ ..+++++||.+.|
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~l~~~gi~v~~--- 383 (412)
T 1yaa_A 323 MVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL---------------TPQMV-KRLEETHAVYLVA--- 383 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------------CHHHH-HHHHHHHCEECCT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC---------------CHHHH-HHHHHhCCEEecc---
Confidence 89999999999999999998874 48888889999999765 33445 5566666999987
Q ss_pred CCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 433 FGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 433 f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
++||+++. +++++++++++|+++++.+
T Consensus 384 -----~~Ris~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 384 -----SGRASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp -----TSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -----CcEEEEccCCHhHHHHHHHHHHHHHHhh
Confidence 57999997 8899999999999988753
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=374.34 Aligned_cols=368 Identities=13% Similarity=0.084 Sum_probs=282.5
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC-CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 145 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~ 145 (470)
+..++...++++.....+.... ...+++|+|+.|+| ++..++.+.+++.++.......|++..|.++||+++++++.
T Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~ 93 (409)
T 4eu1_A 16 TQGPGSMGKPDPILGLGQDFRM--DPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCF 93 (409)
T ss_dssp -----------CHHHHHHHHHH--CCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHH
T ss_pred HhhcCCCCCCChHHHHHHHHhh--CCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHc
Confidence 4455666666655444333322 23457899999998 87777777777777744456889999999999999999984
Q ss_pred HHcCCCCCCCcE--EEecChHHHHHHHH---HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 146 EENGLSYTPDQI--LVSNGAKQSILQAV---LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 146 ~~~g~~~~~~~i--~it~g~~~al~~~~---~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
...+.++++++| ..|.|+++++.++. ..++++||+|++++|+|+++...++..|++++.+|++.++++.+|++.|
T Consensus 94 ~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 173 (409)
T 4eu1_A 94 GPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGM 173 (409)
T ss_dssp CSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHH
T ss_pred CCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHH
Confidence 211111226788 45899999988754 4456899999999999999999999999999999996666788999999
Q ss_pred hhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--CcccccccCCCCCceEE
Q 012124 221 ESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLT 295 (470)
Q Consensus 221 ~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~~~~~~~~~~~~~i~ 295 (470)
++.++ ++++++++++||||||.+++.+++++|+++|++| |++||+||+|+++.+++. ...++..+....+++|+
T Consensus 174 ~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (409)
T 4eu1_A 174 LECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIV 252 (409)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEE
T ss_pred HHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccCCcccchHHHHHHHhhCCcEEE
Confidence 99985 3456666799999999999999999999999999 999999999999888652 12333333223578999
Q ss_pred EeccCcccccccceeeEE---EcCHH----HHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCC---hHHHHHHHHHHHH
Q 012124 296 VNGFSKAFAMTGWRLGYI---AGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKAFRE 365 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~---~~~~~----~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~---~~~~~~~~~~~~~ 365 (470)
++||||.+|++|+|+||+ +++++ +++.+.........+++.+.|.++..+|+++.+. .++++++++.+++
T Consensus 253 ~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (409)
T 4eu1_A 253 AQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAE 332 (409)
T ss_dssp EEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 56677 6777777666667778899999999999863210 3457889999999
Q ss_pred HHHHHHHHhccCC--C-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 366 RRDFLVKSFGELE--G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 366 ~~~~l~~~L~~~~--g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+++.+.+.|++++ + +.+..|.+|+|+|+.++ .+++..|++++||.+.|| .|++
T Consensus 333 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~gv~v~p~--------~Ri~ 388 (409)
T 4eu1_A 333 VRKRLVSELKACGSVHDWSHIERQVGMMAYTGLT----------------REQVELLRSEYHIYMTLN--------GRAA 388 (409)
T ss_dssp HHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCC----------------HHHHHHHHHHHCEECCTT--------CEEE
T ss_pred HHHHHHHHHHhcCCCCCcceecCCceEEEEeCCC----------------HHHHHHHHHcCCEEEcCC--------CEEE
Confidence 9999999998872 1 77778899999996653 245667777779999986 3999
Q ss_pred eec-CHHHHHHHHHHHHHHH
Q 012124 443 YAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 443 ~~~-~~~~i~~~l~~l~~~l 461 (470)
++. +++++++++++|++++
T Consensus 389 ~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 389 VSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp GGGCCTTTHHHHHHHHHHHH
T ss_pred EEecCHhhHHHHHHHHHHHh
Confidence 987 7788999999998876
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=376.73 Aligned_cols=368 Identities=17% Similarity=0.152 Sum_probs=291.9
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCC-CeEEccCCCC-CCCCh----HHHHHHHHHHHH---cCCCCCCCCcCcHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGV-SVIRLAAGEP-DFDTP----VLIAEAGINAIR---EGFTRYTPNAGTLELRS 138 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~g~~-~~~~~----~~~~~a~~~~~~---~~~~~y~~~~g~~~lr~ 138 (470)
...+...++.++..+ .....+++. .+|+|+.|.| +...+ +.+.+++.+... .....|.+..|.+++|+
T Consensus 25 ~~~~~~~~~~~i~~~---~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~ 101 (448)
T 3meb_A 25 FSGFPASPPDAILNL---TVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLE 101 (448)
T ss_dssp TTTCCCCCCCTTHHH---HHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHH
T ss_pred HhcCCCCCCChHHHH---HHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHH
Confidence 334445555554444 344445554 4799999998 65443 566666555441 35678989999999999
Q ss_pred HHHHHHHHHcCCCC---CCCcEEE--ecChHHHHHH--HHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecC
Q 012124 139 AICHKLKEENGLSY---TPDQILV--SNGAKQSILQ--AVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPT 207 (470)
Q Consensus 139 ~ia~~l~~~~g~~~---~~~~i~i--t~g~~~al~~--~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~ 207 (470)
++++++ +|... ++++|++ |+|+++++.+ .+..++.+||+|++++|+|+++...++ ..|++++.+|+
T Consensus 102 ~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~ 178 (448)
T 3meb_A 102 AAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178 (448)
T ss_dssp HHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred HHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence 999998 35432 2689999 9999999987 455677899999999999999999999 99999999999
Q ss_pred cCCC-CCccCHHhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC--Ccc
Q 012124 208 RISE-NFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THT 281 (470)
Q Consensus 208 ~~~~-~~~~d~~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~--~~~ 281 (470)
..++ ++.+|+|.|+++++ ++++++++++||||||.+++.+++++|+++|++| |+++|+||+|+++.+++. ...
T Consensus 179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~li~Deay~~~~~~~~~~~~~ 257 (448)
T 3meb_A 179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK-KHIAFFDSAYQGFATGSFEADAF 257 (448)
T ss_dssp BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTSSSCHHHHTH
T ss_pred cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCCcccCch
Confidence 4444 68899999999996 3577778899999999999999999999999999 999999999999887641 122
Q ss_pred cccccCCCCCceEEEeccCcccccccceeeEE--Ec--------C-H----HHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AG--------P-K----HFVAACNKIQSQFTSGASSISQKAGVAAL 346 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~l 346 (470)
++..+....+++++++||||.+|++|+|+||+ ++ + + ++++.+....+....+++.+.|.++..+|
T Consensus 258 ~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l 337 (448)
T 3meb_A 258 AVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIV 337 (448)
T ss_dssp HHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred hHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHh
Confidence 33333223578999999999999999999998 66 4 4 67777777677777788999999999999
Q ss_pred hcCCCC---hHHHHHHHHHHHHHHHHHHHHhccC--CC------CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHH
Q 012124 347 GLGYAG---GEVVSKMVKAFRERRDFLVKSFGEL--EG------VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 415 (470)
Q Consensus 347 ~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~--~g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 415 (470)
.++.+. .+++++++++++++++.+.+.|+++ ++ +.+..|.+|+|+|+.++ .++
T Consensus 338 ~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~~ 401 (448)
T 3meb_A 338 HDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT----------------PEH 401 (448)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----------------HHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----------------HHH
Confidence 863211 2458889999999999999999886 56 77778899999997763 255
Q ss_pred HHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 416 CRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 416 ~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..|++++||.+.||+ .|||++. +++++++++++|+++++++.
T Consensus 402 ~~~ll~~~gV~v~~G~-------gRis~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 402 VDYLKEKWSIYLVKAG-------GRMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp HHHHHHHHCEEECSGG-------GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCCEEEeCCC-------cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 6677777799999986 2999998 88889999999999998543
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=353.59 Aligned_cols=337 Identities=19% Similarity=0.268 Sum_probs=279.1
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
+++++|||+.|.+++.+++.+.+++.+.+.. ...|+ ..|..++|+++++++ | +++++|++|+|+++++.+++
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~-~~~~~~l~~~la~~~----~--~~~~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERYP-DADYFHLHQALARHH----Q--VPASWILAGNGETESIFTVA 93 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCC-CTTCHHHHHHHHHHH----T--SCGGGEEEESSHHHHHHHHH
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHHH-hhcCC-CCCHHHHHHHHHHHH----C--cCHHHEEECCCHHHHHHHHH
Confidence 4557899999998887889999999888754 56784 468999999999997 3 46789999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++ +||+|++++|+|+++...++..|++++.+|.+.++++.+ ++.+.+.++++++++++++||||||.++|.+++++
T Consensus 94 ~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~ 170 (364)
T 1lc5_A 94 SGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA 170 (364)
T ss_dssp HHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 998 789999999999999999999999999999875444443 57666667778899999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~ 330 (470)
|+++|++| |++||+||+|.++.+++. ++..+.+..+++++++||||.+|++|+|+||++ +++++++.+.....
T Consensus 171 i~~~~~~~-~~~li~De~~~~~~~~~~---~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-- 244 (364)
T 1lc5_A 171 IADRCKSL-NINLILDEAFIDFIPHET---GFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM-- 244 (364)
T ss_dssp HHHHHHHH-TCEEEEECTTGGGSTTCC---CSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC--
T ss_pred HHHHhhhc-CcEEEEECcChhhccCcc---chhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC--
Confidence 99999999 999999999999877532 222222235789999999999998999999999 99999998887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++++.|.++.++|+. .+++++.++.++++++.+.+.|++++|+.+.++. |.|+|+++++
T Consensus 245 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~------------- 306 (364)
T 1lc5_A 245 PWSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCER------------- 306 (364)
T ss_dssp TTCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-SSEEEEEESC-------------
T ss_pred CCCCCHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-CeEEEEECCC-------------
Confidence 456899999999999985 5789999999999999999999988888876544 5567888863
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++++.|.++ ||.+.||..|+. ++++|++++. .++++++++.|+++++++.
T Consensus 307 ~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~~-~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 307 EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRS-AAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECCC-HHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHC-CcEEeeCcccCCCCCCEEEEEeCC-HHHHHHHHHHHHHHhhccc
Confidence 234677777765 999999998853 5799999874 6778888888888877654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=351.78 Aligned_cols=332 Identities=17% Similarity=0.252 Sum_probs=281.8
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
+++++|||+.|.+++++|+.+.+++.+.+.. ...| +..+..++|+++++++ | +++++|++|+|+++++.+++
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~----~--~~~~~i~~~~g~t~al~~~~ 95 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVY-PDVNYRRLNKSIENYL----K--LKDIGIVLGNGASEIIELSI 95 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSC-CCTTCHHHHHHHHHHH----T--CCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCC-CCccHHHHHHHHHHHh----C--CCcceEEEcCCHHHHHHHHH
Confidence 5668899999999988899999999998876 5667 6678999999999997 3 57889999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+.+ |+|++++|+|+++...++..|++++.++++.+++ ++++.+++++++ ++++++++||||||.+++.+++++
T Consensus 96 ~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~ 168 (361)
T 3ftb_A 96 SLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMC--IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIH 168 (361)
T ss_dssp TTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHH
T ss_pred HHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccC--CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHH
Confidence 887 8999999999999999999999999999976544 788999999988 999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~ 330 (470)
|+++|++| |+++|+||+|.++.++ . ..+........+++++++||||.+|++|+|+||++ +++++++.+.....
T Consensus 169 i~~~~~~~-~~~li~De~~~~~~~~-~-~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~-- 243 (361)
T 3ftb_A 169 VLKLAEEK-KKTIIIDEAFIEFTGD-P-SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQN-- 243 (361)
T ss_dssp HHHHHHHH-TCEEEEECSSGGGTCC-T-TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSC--
T ss_pred HHHHhhhc-CCEEEEECcchhhcCC-c-ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCC--
Confidence 99999999 9999999999998876 2 23333333346889999999999999999999999 99999998887654
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
.++++++.|.++.++|+. .+++++.++.++++++.+.+.|++++++. +.++.++ |+|+++++.
T Consensus 244 ~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~----------- 307 (361)
T 3ftb_A 244 PWNINCFAEMAAINCLKD----TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENI----------- 307 (361)
T ss_dssp TTCSCHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEESSS-----------
T ss_pred CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcCCC-----------
Confidence 346899999999999984 68899999999999999999999998888 6666555 578888763
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.++ ||.+.||..|+. ++++|++++ +++++++.++.|+++.+
T Consensus 308 -~~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 308 -SGEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -CHHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 788899988876 999999998864 579999998 55566666666665554
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=365.10 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=274.4
Q ss_pred CCCeEEccCCC---CCC--CChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE--ecChH
Q 012124 93 GVSVIRLAAGE---PDF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV--SNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~---~~~--~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i--t~g~~ 164 (470)
++++|||+.|. ++. .+++.+.+++.+.+.+ ....|++..|..+||+++++++....+.++++++|++ |+|++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~ 104 (396)
T 2q7w_A 25 RPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGT 104 (396)
T ss_dssp ---CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccch
Confidence 45789999998 333 3468899999888765 4568988999999999999999654333346789998 99999
Q ss_pred HHHHHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCC
Q 012124 165 QSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNP 239 (470)
Q Consensus 165 ~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nP 239 (470)
++++++++.+ +.+||+|++++|+|+++...++..|++++.++++.++++.+|++.|++++++ +++++++++||||
T Consensus 105 ~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np 184 (396)
T 2q7w_A 105 GALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred hhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 9999998766 4699999999999999999999999999999986545678999999999864 3667788999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCC-CCcccccccCCCCCceEEEeccCcccccccceeeEEEc---
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--- 315 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~--- 315 (470)
||.++|.+++++|+++|++| |++||+||+|.++.+++ ....++..++...+++++++||||.+|++|+|+||+++
T Consensus 185 tG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~ 263 (396)
T 2q7w_A 185 TGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAA 263 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcC
Confidence 99999999999999999999 99999999999987753 12233443432246899999999999989999999996
Q ss_pred CH----HHHHHHHHHhhhccCCCChHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHHHHHHhccCC---CCeecC
Q 012124 316 PK----HFVAACNKIQSQFTSGASSISQKAGVAALGLG----YAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSE 384 (470)
Q Consensus 316 ~~----~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~ 384 (470)
++ ++++.+.........+++.+.|.++.++|+.+ .+ .++++++++.++++++.+.+.|+++. ++++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 342 (396)
T 2q7w_A 264 DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII 342 (396)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec
Confidence 55 45555555444444456999999999999863 11 36788899999999999999999873 378778
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~ 460 (470)
|.+|+|+|+.++ ... +..+++++||.+.|| +||+++. +++++++++++|+++
T Consensus 343 ~~~~~~~~~~~~---------------~~~-~~~~l~~~gv~v~~~--------~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 343 KQNGMFSFSGLT---------------KEQ-VLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp HCCSSEEECCCC---------------HHH-HHHHHHHHCEECCTT--------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred CCCceEEEecCC---------------HHH-HHHHHHhcCeeecCC--------ceEEEeecCHHHHHHHHHHHHhc
Confidence 899999998763 333 444555569999884 6999997 889999999999875
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=368.31 Aligned_cols=332 Identities=18% Similarity=0.191 Sum_probs=265.6
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHH--Hc--CCCCCCCCcCc-----HHHHHHHHHHHHHHcCCCCCC-CcEEEec
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAI--RE--GFTRYTPNAGT-----LELRSAICHKLKEENGLSYTP-DQILVSN 161 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~--~~--~~~~y~~~~g~-----~~lr~~ia~~l~~~~g~~~~~-~~i~it~ 161 (470)
.++++|+|+.|.|++++|+.+.+++.+.. .. ....|++..|. ++||++|++++. .+|+.+.+ ++|++|+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEE
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeC
Confidence 45678999999999766666666653322 11 45779999998 999999999998 57888877 5999999
Q ss_pred ChHHHHHHHHHHhcCCCC----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 162 GAKQSILQAVLAVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 162 g~~~al~~~~~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
|+++++.+++++++++|| +|++++|+|+.+...++..|++++.++++.++ ++ .+++++|++++||
T Consensus 99 G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~---l~--------~~~~k~v~l~~p~ 167 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAWG---FD--------KKGPYIELVTSPN 167 (391)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEESTT---CC--------CCSCEEEEEESSC
T ss_pred ChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHHH---cC--------CCCCEEEEECCCC
Confidence 999999999999999999 99999999999999999999999988875432 22 2578999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-C
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-P 316 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~ 316 (470)
||||.+++ +|++.++.+ +++||+||+|.+ + ...++.. ..+++|+++||||.+|++|+|+||+++ +
T Consensus 168 NPtG~~~~-----~l~~~~~~~-~~~ii~De~y~~----~-~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 233 (391)
T 3bwn_A 168 NPDGTIRE-----TVVNRPDDD-EAKVIHDFAYYW----P-HYTPITR---RQDHDIMLFTFSKITGHAGSRIGWALVKD 233 (391)
T ss_dssp TTTCCCCC-----CCC-----C-CCEEEEECTTCS----T-TTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEEEEECC
T ss_pred CCCchhHH-----HHHHHhhcC-CCEEEEeCCCCC----C-CCCcccc---CCCCeEEEEechhhcCCCccceEEEEecC
Confidence 99999997 355532333 399999999973 1 1223322 357899999999999999999999997 9
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----
Q 012124 317 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---- 385 (470)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---- 385 (470)
+++++.+...+.....+++.+.|.++..+|+++.. .+++++++++.|+++++.+.+.|++++++.+..|
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~ 313 (391)
T 3bwn_A 234 KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAF 313 (391)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEE
T ss_pred HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccc
Confidence 99999999888766778999999999999986420 1568999999999999999999998877766543
Q ss_pred ---------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHH
Q 012124 386 ---------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVE 455 (470)
Q Consensus 386 ---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~~~~~i~~~l~ 455 (470)
.+|+|+|+++++. ..+. .+++++||.+.||..|+. ++++|||++.++++++++++
T Consensus 314 ~~f~~~~~~~~g~~~~~~~~~~--------------~~~~-~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~ 378 (391)
T 3bwn_A 314 CNYFGKSLESYPAFAWLGTKEE--------------TDLV-SELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLE 378 (391)
T ss_dssp ETTTTEEECCCCSEEEEEESSS--------------CCHH-HHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHH
T ss_pred cccccccCCCcceEEEecCCcH--------------HHHH-HHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHH
Confidence 4456899998731 1233 345566999999999986 68999999999999999999
Q ss_pred HHHHHHHhh
Q 012124 456 RIKKGLLTL 464 (470)
Q Consensus 456 ~l~~~l~~~ 464 (470)
+|++++++.
T Consensus 379 ~L~~~~~~~ 387 (391)
T 3bwn_A 379 RLANMKLIK 387 (391)
T ss_dssp HHHSCC---
T ss_pred HHHHHHHhh
Confidence 999887643
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=351.17 Aligned_cols=332 Identities=23% Similarity=0.380 Sum_probs=285.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
+++|+|+.|.+++++|+.+++++.+.+.. ....|++ .+..+||+++++++ |.+ ++++|++|+|+++++.++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~----g~~-~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM----QVP-AGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH----TCC-TTCEEEEEEHHHHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh----CCC-CcceEEEcCCHHHHHHHHHH
Confidence 46899999999998999999999998875 4677844 68999999999997 432 67899999999999999999
Q ss_pred HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHH
Q 012124 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 173 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
+++++||+|++++|+|+++...++..|++++.++++. ++.+|++.|++++++ ++++|++++||||||.+++.+++++
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 181 (367)
T 3euc_A 104 AAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEA 181 (367)
T ss_dssp HTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999974 566999999999987 8999999999999999999999999
Q ss_pred HHHHHHhCC-CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 252 IARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~-~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
|+++|++|+ |+++|+||+|.++.+.+ ..+ .+.. .++++++.||||. +++|+|+||+++++++++.+.....
T Consensus 182 i~~~~~~~~~~~~li~De~~~~~~~~~--~~~--~~~~-~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~-- 253 (367)
T 3euc_A 182 IVRAAQGSVCRSLVVVDEAYQPFAQES--WMS--RLTD-FGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRP-- 253 (367)
T ss_dssp HHHHTBTTSCBCEEEEECTTCCSSSCC--SGG--GGGT-CTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCC--
T ss_pred HHHhhhhcCCCcEEEEeCcchhhcccc--hHH--HHhh-CCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCC--
Confidence 999999873 59999999999866332 111 2222 5789999999999 7899999999999999988876554
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++.+.+.|.++..+|+. .+++++.+++++++++.+.+.|+++||+.+. +..|+|+|++++
T Consensus 254 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-------------- 314 (367)
T 3euc_A 254 PYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-------------- 314 (367)
T ss_dssp SSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--------------
T ss_pred CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------
Confidence 456899999999999985 6788999999999999999999999899865 455667898886
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|. ++||.+.||..|+. ++++|++++ ++++++++++.|+++++
T Consensus 315 ~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 DAAQTFDRLL-ARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CHHHHHHHHH-TTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 4567888775 45999999988753 589999988 88899999999998764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=359.27 Aligned_cols=371 Identities=13% Similarity=0.129 Sum_probs=279.9
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCC---CCCC--ChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFD--TPVLIAEAGINAIREGF-TRYTPNAGTLELRSAI 140 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~---~~~~--~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~i 140 (470)
.+.+..+++..+...+........+++.+.|||+.|. ++-. ..+.+++|..+.+..+. ..|.|..|.++||+++
T Consensus 17 ~~~~~~~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ai 96 (420)
T 4h51_A 17 TAERWQKIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEA 96 (420)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred hhHHHhCCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHH
Confidence 4445555655544455555555666666789999994 3322 25788888888776654 4699999999999999
Q ss_pred HHHHHHHcCCCCCCCc--EEEecChHHHHHHHHHH----hcCCCCeEEEcCCCCCChHHHHHHcCCE-EEEecCcCCCCC
Q 012124 141 CHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLA----VCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENF 213 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~--i~it~g~~~al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~ 213 (470)
++++. |-....+. .+.|.|++.|+...+.. +.+|||+|++++|+|++|..+++..|++ +..++...++++
T Consensus 97 a~~~~---g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~ 173 (420)
T 4h51_A 97 VKIIY---GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTV 173 (420)
T ss_dssp HHHHH---C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGT
T ss_pred HHHhc---CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccccc
Confidence 99984 33233333 34578888877665554 4579999999999999999999999997 445565555667
Q ss_pred ccCHHhHhhhc---cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc--ccccCC
Q 012124 214 LLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--FASLPG 288 (470)
Q Consensus 214 ~~d~~~l~~~l---~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~--~~~~~~ 288 (470)
.+|.+.+.+.+ .++++++++++||||||.+++.+++++|+++|+++ ++++|+||+|.+|.|++..... +.....
T Consensus 174 ~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~ 252 (420)
T 4h51_A 174 SLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK-HHQVFFDSAYQGYASGSLDTDAYAARLFAR 252 (420)
T ss_dssp EECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CceEeeehhhhhhccCCcccchHHHHhHHh
Confidence 78999888776 35677778899999999999999999999999999 9999999999999887532222 222222
Q ss_pred CCCceEEEeccCcccccccceeeEEEcCHHHH-------HHHHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV-------AACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSK 358 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~-------~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~ 358 (470)
..++++++.||||.|+++|+|+||++++.+.. ..+....+....+++...|.++...+.+..+ +...++.
T Consensus 253 ~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~ 332 (420)
T 4h51_A 253 RGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSA 332 (420)
T ss_dssp TTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35789999999999999999999999765433 3344455667778999999999999886322 1345778
Q ss_pred HHHHHHHHHHHHHHHhccC--CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC
Q 012124 359 MVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD 435 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~ 435 (470)
++++|+++|+.+.+.|+++ ++ |.+..+++|||.|+.++ . +.++.| +++||++.|+.
T Consensus 333 m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls---------------~-e~v~~L-~e~~Vy~~~~g---- 391 (420)
T 4h51_A 333 MAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS---------------K-AQCEYC-QNHNIFITVSG---- 391 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC---------------H-HHHHHH-HHTTEECCTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC---------------H-HHHHHH-HhCCEEEcCCC----
Confidence 8999999999999999886 22 55567888999997653 3 334555 56699998864
Q ss_pred CCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 436 DTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 436 ~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
|||++. ++++|+.++++|.++++++.+
T Consensus 392 ----Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 392 ----RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp ----EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred ----EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 999998 999999999999999987754
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=346.76 Aligned_cols=329 Identities=20% Similarity=0.298 Sum_probs=279.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
|||+.|.+++++++.+.+++.+.+.+. ...|++..+ .++|+++++++.+.+|+.+++++|++|+|+++++..++++
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~ 111 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 111 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHH
Confidence 899999998888999999999988652 677866656 7999999999999888888889999999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
++++||+|++++|+|+++...++..|++++.+|.+ +++.+|++.+++++++ ++++|++++||||||.++|.+++++
T Consensus 112 l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~- 188 (369)
T 3cq5_A 112 FGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVER- 188 (369)
T ss_dssp HCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH-
T ss_pred hcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHH-
Confidence 99999999999999999999999999999999975 4467999999999977 8999999999999999999655554
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC-ceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhcc
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 331 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~ 331 (470)
+|+.+ +++||+||+|+++.++ .+...+.+..+ ++++++||||.+|++|+|+||+++++++++.+......
T Consensus 189 --l~~~~-~~~li~De~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-- 259 (369)
T 3cq5_A 189 --IINVA-PGIVIVDEAYAEFSPS----PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP-- 259 (369)
T ss_dssp --HHHHC-SSEEEEECTTGGGCCS----CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT--
T ss_pred --HHHhC-CCEEEEECCchhhcCC----cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC--
Confidence 55567 7999999999987653 23333322245 89999999999988999999999999998888765543
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 411 (470)
++++.+.|.++.++++. .+++++.++.++++++.+.+.|++. |+.+.++ .|.|+|++++ . +
T Consensus 260 ~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~-~------------~ 320 (369)
T 3cq5_A 260 YHLSALSQAAAIVALRH----SADTLGTVEKLSVERVRVAARLEEL-GYAVVPS-ESNFVFFGDF-S------------D 320 (369)
T ss_dssp TCSCHHHHHHHHHHHHT----HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECC-SSSEEEEECC-S------------S
T ss_pred CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCC-CCeEEEEECC-C------------C
Confidence 46899999999999985 5688899999999999999999885 8887754 4566888886 2 6
Q ss_pred HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 412 SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 412 ~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
..++.+.|.+ +||.+.|| +.++++|++++ +++++++++++|+++++
T Consensus 321 ~~~l~~~l~~-~gi~v~~~---~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 321 QHAAWQAFLD-RGVLIRDV---GIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp HHHHHHHHHH-TTEECBCC---SCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-CCEEEEEC---CCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 7788888865 59999998 34689999999 78899999999998875
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-45 Score=364.36 Aligned_cols=329 Identities=15% Similarity=0.185 Sum_probs=276.3
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHH-cCCC--CCCCCc-C---cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIR-EGFT--RYTPNA-G---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~--~y~~~~-g---~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
..+|+|+.|+|++.+|+.+.+++.+.+. .+.. .|++.. | .++||++|++++.+..+..+++++|++|+|++++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a 135 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL 135 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence 3679999999998777788888887763 3333 498888 9 9999999999999877766789999999999999
Q ss_pred HHHHHHHh--------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCC
Q 012124 167 ILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 238 (470)
Q Consensus 167 l~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~n 238 (470)
+.+++.+| ++|||+|++++|+|+.+...++..|++++. +.+|++.|++++++++++|++++|||
T Consensus 136 l~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~k~v~l~~p~N 207 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEMVTSPNN 207 (427)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEEEESSCT
T ss_pred HHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcCCceEEEEcCCCC
Confidence 99999999 899999999999999999999999988763 33788999999988899999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PK 317 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~ 317 (470)
|||.+++ +. + + ++.+|.|+.|. + ...++..++ .+++|+++||||.+|++|+|+||+++ ++
T Consensus 208 PtG~~~~-~~-------l--~-~~~~i~d~~~~----~--~~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~ 268 (427)
T 2hox_A 208 PEGLLRH-AV-------I--K-GCKSIYDMVYY----W--PHYTPIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (427)
T ss_dssp TTCCCCC-CS-------S--T-TCEEEEECTTC----S--TTTSCCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred CcccccH-HH-------H--c-CCCEEEeeccc----C--CCCCccccC--CCceEEEEeChhcCCCCCceEEEEEECCH
Confidence 9999999 41 2 2 45677787763 2 233444444 57899999999999999999999999 58
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHhcC---------CCChHHHHHHHHHHHHHHHHHHHHhccCCCCee------
Q 012124 318 HFVAACNKIQSQFTSGASSISQKAGVAALGLG---------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM------ 382 (470)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~------ 382 (470)
++++.+.+.......+++.+.|.++..+|+++ .+ ++++++.++.++++++.+.+.|++++|+.+
T Consensus 269 ~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 347 (427)
T 2hox_A 269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTM-RDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS 347 (427)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTST-TSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchh-HHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccc
Confidence 99999999888777889999999999999864 12 567888999999999999999998766554
Q ss_pred --------cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHH
Q 012124 383 --------SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAA 453 (470)
Q Consensus 383 --------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~~~~~i~~~ 453 (470)
..|.+|+|+|+++++ +..++++.|++++||.+.||..|+. ++++|||++.++++|+++
T Consensus 348 ~~~~~~~~~~p~~g~f~~~~~~~-------------~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~~~e~l~~~ 414 (427)
T 2hox_A 348 EYCNYFRRMRPPSPSYAWVKCEW-------------EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQL 414 (427)
T ss_dssp EEETTTTEEECCCCSEEEEEECS-------------GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHH
T ss_pred cccccccccCCCCceEEEEECCC-------------cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecCCHHHHHHH
Confidence 346679999999974 2445777777667999999999986 789999999999999999
Q ss_pred HHHHHHHHHh
Q 012124 454 VERIKKGLLT 463 (470)
Q Consensus 454 l~~l~~~l~~ 463 (470)
+++|++++++
T Consensus 415 l~~l~~~~~~ 424 (427)
T 2hox_A 415 MYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998864
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=336.67 Aligned_cols=323 Identities=20% Similarity=0.274 Sum_probs=265.1
Q ss_pred hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 91 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
...+++|+|+.+.+++++++.+.+++.+.+.. ...| +..|..+||+++++++. +++++|++|+|+++++.++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~lr~~la~~~~------~~~~~i~~t~G~~~~l~~~ 84 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR-INRY-PFDAEPRVMRKLAEHFS------CPEDNLMLVRGIDECFDRI 84 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSC-CTTHHHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHH
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh-hccC-CCCchHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHH
Confidence 35567899999999888999999999987754 6678 56799999999999973 5778999999999999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+..+ +||+|++++|+|+++...++..|++++.++++. ++.+|++.++++ .+++++++++||||||.++|.++
T Consensus 85 ~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~-- 156 (337)
T 3p1t_A 85 SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGE-- 156 (337)
T ss_dssp HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHH--
T ss_pred HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHH--
Confidence 9987 999999999999999999999999999999863 467999999987 46789999999999999999555
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+.++|+++ +++ |+||+|.++.+.+. .. .. ..+++++++||||.+|++|+|+||+++++++++.+.....
T Consensus 157 -l~~l~~~~-~~~-ivDea~~~~~~~~~--~~---~~-~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~-- 225 (337)
T 3p1t_A 157 -LDQLRQRA-GKL-LIDETYVDYSSFRA--RG---LA-YGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW-- 225 (337)
T ss_dssp -HHHHHHHC-SEE-EEECTTGGGSSCSS--SC---CC-CBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC--
T ss_pred -HHHHHHhC-CcE-EEECCChhhccccc--cc---cc-cCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC--
Confidence 55556788 874 55999998654332 11 11 2478899999999999999999999999999998877543
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++.+.|.++..+++. ..+..+.++++.++++.+.+.|+++ |+.+.++.++| +|+..+
T Consensus 226 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~-------------- 285 (337)
T 3p1t_A 226 FCNVGTLDLHALEAALDN----DRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANF-VLVENA-------------- 285 (337)
T ss_dssp TTCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSE-EEEECT--------------
T ss_pred CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeE-EEEEcC--------------
Confidence 456889999999999985 4455666667777889999999988 88887777665 566665
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|. ++||.+.||..|+.++++|++++ ++++++++++.|+++++
T Consensus 286 ~~~~~~~~l~-~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 286 AGERTLRFLR-ERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp TTHHHHHHHH-HTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHH-HCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 3345666655 45999999999988899999998 67888888888887653
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=339.69 Aligned_cols=327 Identities=19% Similarity=0.305 Sum_probs=274.4
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
.++++|+|+.|+|++++++.+.+++.+.+.+. ...|+ ..+..+||+++++++ | +++++|++|+|+++++.
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~~~----g--~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGELY----G--FDPSWIIMANGSDEVLN 96 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHHHH----T--CCGGGEEEESSHHHHHH
T ss_pred cccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHHHh----C--cCcceEEEcCCHHHHHH
Confidence 45678999999999999999999999998775 67784 457799999999997 3 57889999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHH
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
+++++++++||+|++++|+|+++...++..|++++.++++. ++.+ +.+++.+ +++++++++|+||||.+++.+
T Consensus 97 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~- 169 (360)
T 3hdo_A 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLE- 169 (360)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHH-
T ss_pred HHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHH-
Confidence 99999999999999999999999999999999999999863 3334 5555544 467888999999999999954
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 328 (470)
+|.++|+++ |++||+||+|.++. +.....+ .+ ..+++++++||||.+|++|+|+||+++++++++.+.....
T Consensus 170 --~l~~l~~~~-~~~li~De~~~~~~--~~~~~~~--~~-~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 241 (360)
T 3hdo_A 170 --YIDELARRC-AGMLVLDETYAEFA--ESNALEL--VR-RHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD 241 (360)
T ss_dssp --HHHHHHHHB-SSEEEEECTTGGGS--SCCCTHH--HH-HCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC
T ss_pred --HHHHHHHHC-CCEEEEECChHhhC--CcchhHH--hc-cCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC
Confidence 566677899 99999999999863 2222222 12 2578999999999999899999999999999999988764
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 408 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 408 (470)
. ++.+++.|.++.++|+. .+++++.++.++++++.+.+.|+++ |+.+.++. +.|+|+.++..
T Consensus 242 ~--~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~---------- 303 (360)
T 3hdo_A 242 H--YNLDRLAQAACVAALRD----QAYLSECCRRIRETREWFTTELRSI-GYDVIPSQ-GNYLFATPPDR---------- 303 (360)
T ss_dssp S--CCSCHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCS-SSEEEEECTTC----------
T ss_pred C--CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCC-ccEEEEECCCC----------
Confidence 3 56899999999999985 6788999999999999999999988 88876554 55588888743
Q ss_pred CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 409 IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 409 ~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.++ ||.+.|+..++.++++|++++ ++++++++++.|+++.+
T Consensus 304 --~~~~l~~~l~~~-gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 304 --DGKRVYDGLYAR-KVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp --CHHHHHHHHHHT-TEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHC-CEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 778898888755 999999877656789999998 77899999999988764
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=343.21 Aligned_cols=327 Identities=16% Similarity=0.268 Sum_probs=267.0
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.|+++|||+.|.+++++++.+.+++.+.+ .....|+++.+ .+||+++++++ | +++++|++|+|+++++.+++
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~-~~lr~~la~~~----~--~~~~~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPDA-GTLRQMLAKRN----S--VDNNAILVTNGPTAAFYQIA 84 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTTC-HHHHHHHHHHT----T--CCGGGEEEESHHHHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCcH-HHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 45688999999999999999999998887 44677877666 89999999986 3 57889999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecC-cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
+++. ||+|++++|+|+++...++..|++++.+++ +.+++ +++ +++++|++++||||||.+++.++++
T Consensus 85 ~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~~~~l~ 152 (350)
T 3fkd_A 85 QAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQRTEIL 152 (350)
T ss_dssp HHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCCHHHHH
Confidence 9987 999999999999999999999999999998 54333 333 5789999999999999999998888
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
+|+++|+++ +||+||+|.++.+.+... ...++. .+++++++||||.++++|+|+||+++++++++.+.....
T Consensus 153 ~l~~~~~~~---~li~Dea~~~~~~~~~~~--~~~~~~-~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-- 224 (350)
T 3fkd_A 153 RLLNDHPDT---TFVLDQSYVSFTTEEVIR--PADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST-- 224 (350)
T ss_dssp HHHHHCTTS---EEEEECTTTTSCSSCCCC--GGGGTT-CSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--
T ss_pred HHHHhCCCC---EEEEECchhhhccCcchh--hHHhhc-CCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--
Confidence 888877643 999999999987765322 233333 688999999999999999999999999999999887664
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++++.+.|.++..+|+.+. .+.+++++.+ ++++.+.+.|++++|+.+.++. +.|+|++++..
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~------------ 287 (350)
T 3fkd_A 225 PWAVNALAIEAAKFILIHPA---QFTLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-TTFFLLRLKKG------------ 287 (350)
T ss_dssp TTCSCHHHHHHHHHHHHCTT---TTCCCHHHHH-HHHHHHHHHHHHSTTEEECCCS-SSEEEEEESSS------------
T ss_pred CCCCCHHHHHHHHHHHhCHH---HHHHHHHHHH-HHHHHHHHHHhcCCCcEECCCC-CcEEEEECCCC------------
Confidence 35689999999999998743 2344444444 7888899999888899886555 55578888753
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhh
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++.+.|.+++||.+.||..|+. ++++|++++ ++++++++++.|++++++.
T Consensus 288 ~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 288 TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHHh
Confidence 6788999988756999999999875 679999998 5667788888888777654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=352.34 Aligned_cols=360 Identities=16% Similarity=0.126 Sum_probs=282.2
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CC--CChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~--~~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l 144 (470)
+...++.....+...... ..++++|+|+.|.+ +. .+++.+.+++.+.+.. ....|++..|..+||+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~ 82 (394)
T 2ay1_A 5 LKPQAPDKILALMGEFRA--DPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELI 82 (394)
T ss_dssp CCCCCCCSHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHH
T ss_pred CccCCCccHHHHHHHHHh--CCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHH
Confidence 445556666555443332 24567899999985 32 4468899999888764 4668988899999999999998
Q ss_pred HHHcCCCCCCCcEEE--ecChHHHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 145 KEENGLSYTPDQILV--SNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 145 ~~~~g~~~~~~~i~i--t~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
.. .+ +++++|++ |+|++++++++++.+.. +||+|++++|+|+++...++..|++++.++++.++++.+|++.+
T Consensus 83 ~~-~~--~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l 159 (394)
T 2ay1_A 83 LG-DG--LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGM 159 (394)
T ss_dssp HG-GG--CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHH
T ss_pred hC-CC--CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHH
Confidence 53 22 36789999 99999999999988754 99999999999999999999999999999986545678999999
Q ss_pred hhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCCCceEEE
Q 012124 221 ESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTLTV 296 (470)
Q Consensus 221 ~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~~~~i~i 296 (470)
++++++ +++++++++||||||.++|.+++++|+++|++| |++||+||+|.++.+++. ...++..+....++++++
T Consensus 160 ~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (394)
T 2ay1_A 160 KADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIA 238 (394)
T ss_dssp HHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecCccccccCcccchHHHHHHhhcCCCEEEE
Confidence 999864 356677799999999999999999999999999 999999999999877531 122333332224678999
Q ss_pred eccCcccccccceeeEEEc---CHHHHHH----HHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRER 366 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~---~~~~~~~----l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~ 366 (470)
+||||.+|++|+|+||+++ ++++++. +.........+++++.|.++.++|+.+.+ ..+++++++++++++
T Consensus 239 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 318 (394)
T 2ay1_A 239 ASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRL 318 (394)
T ss_dssp EECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999989999999998 5665444 33333334445689999999999986310 036788999999999
Q ss_pred HHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012124 367 RDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 443 (470)
Q Consensus 367 ~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~ 443 (470)
++.+.+.|+++. ++.+..+.+|+|+|++++ ...+. .+++++||.+.|| +|+++
T Consensus 319 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~-~~l~~~gi~v~~~--------~Ris~ 374 (394)
T 2ay1_A 319 REQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT---------------PEQVK-RIKEEFGIYMVGD--------SRINI 374 (394)
T ss_dssp HHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---------------HHHHH-HHHHHHCEECCTT--------CEEEG
T ss_pred HHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---------------HHHHH-HHHHhCCEEecCC--------CeEEe
Confidence 999999998863 477777888999998763 33444 4455569999885 59999
Q ss_pred ec-CHHHHHHHHHHHHHH
Q 012124 444 AA-SLTTLQAAVERIKKG 460 (470)
Q Consensus 444 ~~-~~~~i~~~l~~l~~~ 460 (470)
+. +++++++++++|+++
T Consensus 375 ~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 375 AGLNDNTIPILARAIIEV 392 (394)
T ss_dssp GGCCTTTHHHHHHHHHHH
T ss_pred ecCCHhhHHHHHHHHHHc
Confidence 87 889999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=328.36 Aligned_cols=314 Identities=21% Similarity=0.333 Sum_probs=259.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHH-cCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++|+|+.|.+++++|+.+++++.+.+. .....|+ ..+..++|+++++++.+. .+++++|++|+|+++++.+++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC-CSSCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCchHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHH
Confidence 569999999988888999999998873 3456784 457999999999998642 35778999999999999999998
Q ss_pred hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 174 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+ ||+|+++ |+|+++...++..|++++.+|++ +++.+|++.| +++++|++++||||||.++|.+++++|+
T Consensus 96 ~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~ 164 (335)
T 1uu1_A 96 F---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_dssp S---SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred h---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 8 8999999 99999999999999999999985 3456888877 4789999999999999999977776666
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCC
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 333 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~ 333 (470)
++ . | ++|+||+|.++.+. ++..+.+..+++++++||||.+|++|+|+||+++++++++.+...... ++
T Consensus 165 ~~---~-~-~li~De~~~~~~~~-----~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~~ 232 (335)
T 1uu1_A 165 KT---G-A-FVALDEAYYEFHGE-----SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FN 232 (335)
T ss_dssp HT---T-C-EEEEECTTHHHHCC-----CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT--TC
T ss_pred Hh---C-C-EEEEECcchhhcch-----hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC--CC
Confidence 64 4 7 89999999986542 112211225789999999999998999999999999999988876543 57
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHH
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 413 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (470)
++.+.|.++.++|+. .+++++.+++++++++.+.+.|+++ |+.+. +.+++|+|++++.. +..
T Consensus 233 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~~ 294 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKE------------EKE 294 (335)
T ss_dssp SCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTH------------HHH
T ss_pred cCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCC------------CHH
Confidence 899999999999985 5678889999999999999999887 77665 45567799998752 567
Q ss_pred HHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 414 SLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 414 ~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
++.+.|.++ ||.+.|+ ++++|++++. ++++++++++|+++
T Consensus 295 ~~~~~l~~~-gi~v~~~-----~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 295 RLLEHLRTK-NVAVRSF-----REGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHH-TEEEEEE-----TTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHC-CEEEEEC-----CCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 888888765 9999982 5789999975 56799999988754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=330.58 Aligned_cols=337 Identities=18% Similarity=0.193 Sum_probs=277.1
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+++|||+.|.| ++.+++.+.+++.+.+... ...|.+..|..++++++++++.+.+|. +++++|+|+++++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~ 116 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSN 116 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHH
Confidence 3456799999998 6657889999999888652 234556778899999999999988774 5899999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCcccC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 243 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPtG~~ 243 (470)
..++++++++||.|++++|+|+.+...++..|++++.+|. +|++.|++++++ ++++|++++|+||||.+
T Consensus 117 ~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~ 189 (398)
T 3a2b_A 117 LGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDI 189 (398)
T ss_dssp HHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCc
Confidence 9999999999999999999999999999999999999986 588999999866 78999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc-eEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
++ +++|+++|++| |++||+||+|+.+.++.. ..++....+..++ +++++||||.++++| ||+++++++++.
T Consensus 190 ~~---~~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~ 261 (398)
T 3a2b_A 190 VN---LPELTSIANEF-DAAVMVDDAHSLGVIGHK-GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDF 261 (398)
T ss_dssp CC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHH
T ss_pred cC---HHHHHHHHHHc-CcEEEEECCCcccccCCC-CCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHH
Confidence 98 89999999999 999999999998776422 1223222111345 699999999998667 999999999998
Q ss_pred HHHH-hhhccCCCChHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKI-QSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~-~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+... ......+++.+.|. ++..+|+. .++.+++++.++++++.+.+.|+++ |+++..+. |+++|+.++...
T Consensus 262 l~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-g~~~~~~~~~~~- 334 (398)
T 3a2b_A 262 LKHNARSVMFSASMTPASVASTLKALEI----IQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATE-SPILPIFIRSNE- 334 (398)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHH----HHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCC-SSEEEEECCCHH-
T ss_pred HHHhcccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCC-CCEEEEEcCCHH-
Confidence 8775 33344445666666 45577764 3456788899999999999999988 88877665 577899987532
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++++.|+++ ||.+.||..|.. ++++|++++. +++++++++++|+++++++.
T Consensus 335 ----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 335 ----------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp ----------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 567888988877 999999988863 4789999996 99999999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=316.42 Aligned_cols=358 Identities=16% Similarity=0.128 Sum_probs=275.5
Q ss_pred ccccccccchhhh----hhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCC-CCChHHHHH
Q 012124 40 NFNLNNDRRVLRV----MACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD-FDTPVLIAE 114 (470)
Q Consensus 40 Ay~~L~~~G~i~s----~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~-~~~~~~~~~ 114 (470)
+|+++..+|++.. ..+ +|+||.. +|+++|||+.|+|. +.+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-~g~~v~~----------------------------~g~~~id~~~~~~~g~~~~~~v~~ 64 (399)
T 3tqx_A 14 EIEGLKKAGLYKSERIITSP-QNAEIKV----------------------------GEKEVLNFCANNYLGLADHPALIK 64 (399)
T ss_dssp HHHHHHTTTCCCCCCCBCSC-SSSEEEE----------------------------TTEEEEECSSCCTTSCTTCHHHHH
T ss_pred HHHHHHHcCCccccccccCC-CCceEee----------------------------CCeeEEEeeccCcccccCCHHHHH
Confidence 8999999999866 446 7888732 24467999999763 345788999
Q ss_pred HHHHHHHcCCC-----C--CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 115 AGINAIREGFT-----R--YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 115 a~~~~~~~~~~-----~--y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
++.+.+.+... . |+...+..++++.+++++ |. +++|++++| ++++..++.+++++||.|++++|+
T Consensus 65 a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~~---~~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~ 136 (399)
T 3tqx_A 65 TAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----GT---DDTILYSSC-FDANGGLFETLLGPEDAIISDELN 136 (399)
T ss_dssp HHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----TC---SEEEEESCH-HHHHHTTHHHHCCTTCEEEEETTC
T ss_pred HHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----CC---CcEEEECch-HHHHHHHHHHhcCCCCEEEECCcc
Confidence 99888865211 1 223334577777777775 42 246666665 679999999999999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
|+.+...++..|++++.++. +|++.|++.+++ ++++|++++|+||||.+++ +++|+++|++| |
T Consensus 137 ~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 205 (399)
T 3tqx_A 137 HASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICDLADKY-N 205 (399)
T ss_dssp CHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHT-T
T ss_pred cHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-C
Confidence 99999999999999999986 477888888864 7899999999999999999 88999999999 9
Q ss_pred EEEEEeccccccccCCCCccccccc-CCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh--ccCCCChHH
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSIS 338 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 338 (470)
++||+||+|+...++... .++... .-..+.+++++||||.++ |++.||+++++++++.+...... ...+.+++.
T Consensus 206 ~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (399)
T 3tqx_A 206 ALVMVDDSHAVGFIGENG-RGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVI 282 (399)
T ss_dssp CEEEEECTTTTTTSSTTS-CCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHH
T ss_pred CEEEEECCccccccCCCC-CchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHH
Confidence 999999999743333222 222222 111356799999999997 44559999999999998875332 234577777
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHH
Q 012124 339 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 418 (470)
Q Consensus 339 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 418 (470)
+.++...++. ..++.+++++.++++++++.+.|+++ |+.+..+.+++ +|+.++... +..++++.
T Consensus 283 ~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~ 346 (399)
T 3tqx_A 283 VATSLKVLEL---LKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVMLGDAQ-----------LATNMADH 346 (399)
T ss_dssp HHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEEEECHH-----------HHHHHHHH
T ss_pred HHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCHH-----------HHHHHHHH
Confidence 7788888775 12668899999999999999999988 88777555554 788887542 56788998
Q ss_pred HHHcCCEEEECCCCCC---CCCcEEEEee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 419 LLDKAQVALVPGDAFG---DDTCIRISYA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 419 L~~~~gI~v~pg~~f~---~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.++ ||.+.|+..+. .++++|++++ .+++++++++++|+++++++.
T Consensus 347 l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 347 LLQE-GIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp HHHT-TEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHC-CCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 8875 99999875543 2358999998 399999999999999998764
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=308.10 Aligned_cols=335 Identities=16% Similarity=0.222 Sum_probs=262.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC-------CCCCCC--CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-------~~~y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
+++++|+.|.++ ..|+.+++++.+.+... ...|++ ..+..++|+.+++++ |.. ++++|++|+|++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~t 100 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NAR-SPREIVYTRNAT 100 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEcCChH
Confidence 347999999998 67889999999988752 233433 366788888888886 321 568999999999
Q ss_pred HHHHHHHHHh----cCCCCeEEEcCCCCCC----hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 165 QSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 165 ~al~~~~~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+++.+++.++ +++||+|++++|+|++ +...++..|++++.++++ .++.+|++.|++++++++++|++++|
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~ 178 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLVTVVHI 178 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEEEEESB
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEEEEeCC
Confidence 9999999999 8999999999999998 456677889999999986 34568999999999989999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|.++|++| |++||+|++|+.+.. ...+.. .+.++++.|+||.+|.+| +||++++
T Consensus 179 ~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~~----~~~~~~----~~~di~~~s~sK~~~~~g--~G~~~~~ 244 (420)
T 1t3i_A 179 SNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSAPHY----PLDVQL----IDCDWLVASGHKMCAPTG--IGFLYGK 244 (420)
T ss_dssp CTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEEC
T ss_pred cccccCcCC---HHHHHHHHHHc-CCEEEEEhhhccCCc----cCchhh----cCCCEEEEehhhhcCCCc--eEEEEEc
Confidence 999999999 88999999999 999999999986322 112222 245689999999888666 8999999
Q ss_pred HHHHHHHHHHhhh--------------------ccCCCChHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 317 KHFVAACNKIQSQ--------------------FTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 317 ~~~~~~l~~~~~~--------------------~~~~~~~~~q~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+++++.+...... +..+++.+.|.++.. +++.- .+.++++++++++++++++.+.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~ 322 (420)
T 1t3i_A 245 EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLG 322 (420)
T ss_dssp HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877544321 123466777776554 44420 023467888999999999999999
Q ss_pred cCCCCeecCCC------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEE
Q 012124 376 ELEGVKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRI 441 (470)
Q Consensus 376 ~~~g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iRl 441 (470)
+++|+++..+. ++++ ++.++.. +..++.+.|. +.||.+.||..| +.++++|+
T Consensus 323 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~g~~~~iRi 388 (420)
T 1t3i_A 323 QIPQLRLYGPNPKHGDRAALA-SFNVAGL------------HASDVATMVD-QDGIAIRSGHHCTQPLHRLFDASGSARA 388 (420)
T ss_dssp TCTTEEEESCCGGGSCBCSEE-EEEETTB------------CHHHHHHHHH-TTTEECBCSCTTCHHHHHHTTCCCCEEE
T ss_pred hCCCeEEeCCCccccccCCEE-EEEECCC------------CHHHHHHHHH-HCCeEEeeccccchHHHHhcCCCCeEEE
Confidence 98888887664 5554 5567642 6778887665 559999999644 33689999
Q ss_pred Eeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 442 SYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 442 s~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++. +++++++++++|+++++.++.
T Consensus 389 s~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 389 SLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9996 899999999999999987754
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=301.27 Aligned_cols=327 Identities=12% Similarity=0.098 Sum_probs=255.9
Q ss_pred CCCeEEccCCCC-CCCChHHHHHHHHHHHHc-CC----CCC--CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-GF----TRY--TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~-~~----~~y--~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|+.++||+.|.+ ++.+++.+.+++.+.+.. +. ..| +...+..++|+++++++ |. ++.|++++| +
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~---~~~i~~~sG-t 109 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GY---SRALLFISG-F 109 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TC---SEEEEESCH-H
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CC---CcEEEeCCc-H
Confidence 446799999985 555678899999988865 21 223 44567888999998886 43 245555555 8
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcc
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTG 241 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG 241 (470)
+++..++++++++||.|++++|+|+.+...++..|++++.+|. +|++.|++.+++ +++++++++||||||
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~nptG 182 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFSMDG 182 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCTTTC
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999884 488999998864 367888899999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 321 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~ 321 (470)
.+++ +++|+++|++| |++||+||+|+.+.++.........+. .+..++++||||.++++| ||+++++++++
T Consensus 183 ~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~--~~~di~~~s~sK~~~~~G---G~~~~~~~~~~ 253 (384)
T 1bs0_A 183 DSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGFGVSG---AAVLCSSTVAD 253 (384)
T ss_dssp CBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHHHHTT--CCCSEEEEESSSTTSSCC---EEEEECHHHHH
T ss_pred CccC---HHHHHHHHHHc-CcEEEEECCcccceecCCCCchHHhcC--CCCcEEEeeccchhhccC---cEEEeCHHHHH
Confidence 9999 88999999999 999999999987655311111112222 134499999999998666 99999999999
Q ss_pred HHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 322 ACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 322 ~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
.+...... .+.+.+++.+.++.++++. ..+ +.++.+++++++++++.+.|+++ |+++.+ ..+.++|++++..
T Consensus 254 ~l~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~ 328 (384)
T 1bs0_A 254 YLLQFARHLIYSTSMPPAQAQALRASLAV---IRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGDN 328 (384)
T ss_dssp HHHHHCHHHHSSBCCCHHHHHHHHHHHHH---HHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEESH
T ss_pred HHHHhchhhhcCCCCCHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCCH
Confidence 88765322 2335788888888888874 122 67788999999999999999988 787764 4455678888743
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
. +..++.+.|.++ ||.+.||..|+. .+++|++++. +++++++++++|+++
T Consensus 329 ~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 329 S-----------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp H-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 2 567888888876 999999987753 3689999986 899999999999864
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=299.18 Aligned_cols=321 Identities=14% Similarity=0.159 Sum_probs=261.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p 186 (470)
..++.+.+++.+.+. ..|++ ...++++.+++++.+.+|.+ ++++|++|+|+++++..++.+++++||+|++++|
T Consensus 30 ~~~~~v~~a~~~~~~---~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~ 103 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMF---SHRSK--EYRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTII 103 (386)
T ss_dssp CCCHHHHHHTTSCCC---CTTSH--HHHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCcHHHHHHHhcccc---cccCH--HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcC
Confidence 346777777665432 25533 24789999999999988975 4678999999999999999999999999999999
Q ss_pred CCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 187 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 187 ~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
+|++ +...++..|++++.++++. ++.+|++.|++++ .+++++|++++|+||||.+++ +++|+++|++| |+
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 177 (386)
T 2dr1_A 104 GAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPELAKVAKEH-DK 177 (386)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHT-TC
T ss_pred CchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHHHHHHHHc-CC
Confidence 9998 8888899999999999864 4568999999999 568999999999999999998 89999999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH----------------HH
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----------------KI 326 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~----------------~~ 326 (470)
+||+|++|+.+.+. .+ +.. .+.++++.||||.++.+ .++||+++++++++.+. ..
T Consensus 178 ~li~D~a~~~~~~~----~~---~~~-~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (386)
T 2dr1_A 178 LVFVDAVSAMGGAD----IK---FDK-WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYL 248 (386)
T ss_dssp EEEEECTTTBTTBC----CC---TTT-TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHH
T ss_pred eEEEEccccccCcc----cc---ccc-cCCcEEEEeccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhh
Confidence 99999999875431 12 222 35679999999999744 34999999999888762 22
Q ss_pred --hhhccCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCcc
Q 012124 327 --QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYY 399 (470)
Q Consensus 327 --~~~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~ 399 (470)
.....++++.+.|.++..+|+. ..+ .+++++++++++++++.+.|+++ |+++..+. .+.++|+.++...
T Consensus 249 ~~~~~~~~~~~~~~~~a~~~~l~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 324 (386)
T 2dr1_A 249 KEKESTPSTPPMPQVFGINVALRI---IEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPPGI 324 (386)
T ss_dssp HHHSSCSSCCCHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCTTC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCCCC
Confidence 1244556888899998888875 233 37788999999999999999988 88877664 3667888887432
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..+++++|.++ ||.+.||..+..++++|++++. +++++++++++|+++++++
T Consensus 325 -----------~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 325 -----------KGDEVYEAMRKR-GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp -----------CHHHHHHHHHHT-TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 678899998877 9999999876667899999994 9999999999999998865
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=298.65 Aligned_cols=333 Identities=16% Similarity=0.210 Sum_probs=260.9
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCC---CCC------CCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF---TRY------TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~---~~y------~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
++++.|..+.++ +.|+.+.+++.+.+.... ..| .+..+..++|+++++++ |.. ++++|++|+|++
T Consensus 22 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~t 95 (406)
T 1kmj_A 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NAR-SAEELVFVRGTT 95 (406)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEeCChh
Confidence 457999999987 567889999999887532 111 23456778888888875 321 568999999999
Q ss_pred HHHHHHHHHh----cCCCCeEEEcCCCCCChH----HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 165 QSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 165 ~al~~~~~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
+++.++++++ +++||+|++++|+|++.. ..++..|++++.++++. ++.+|++.|++++++++++|++++|
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~~~~ 173 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKTRLLAITHV 173 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEEEEEESB
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCCeEEEEeCC
Confidence 9999999999 899999999999998754 34677899999999864 4568999999999989999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|.++|++| |++||+|++|+.... ...+.. .+.++++.||||.+|.+| +||++++
T Consensus 174 ~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~g~~----~~~~~~----~~~d~~~~s~~K~~g~~G--~G~~~~~ 239 (406)
T 1kmj_A 174 SNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAVMHH----PVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVK 239 (406)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEEC
T ss_pred CccccCcCC---HHHHHHHHHHc-CCEEEEEchhhcCCC----CCcccc----cCCCEEEEEchhccCCCC--cEEEEEe
Confidence 999999999 89999999999 999999999986321 112211 246799999999998777 8999999
Q ss_pred HHHHHHHHHHhh---------------------hccCCCChHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012124 317 KHFVAACNKIQS---------------------QFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374 (470)
Q Consensus 317 ~~~~~~l~~~~~---------------------~~~~~~~~~~q~a~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 374 (470)
+++++.+..... .+..+++.+.|.++. ++++.- .+.++++++++++++++++.+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L 317 (406)
T 1kmj_A 240 EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYALSQL 317 (406)
T ss_dssp HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHH
Confidence 998887754331 122345667776655 455431 02356788889999999999999
Q ss_pred ccCCCCeecCC--CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEee
Q 012124 375 GELEGVKMSEP--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYA 444 (470)
Q Consensus 375 ~~~~g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iRls~~ 444 (470)
++++|+++..+ .++++.| .+++. +..++.+.|.++ ||.+.||..| +.++++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~g~~~~iRis~~ 383 (406)
T 1kmj_A 318 ESVPDLTLYGPQNRLGVIAF-NLGKH------------HAYDVGSFLDNY-GIAVRTGHHCAMPLMAYYNVPAMCRASLA 383 (406)
T ss_dssp TTSTTEEEESCTTCCSEEEE-EETTC------------CHHHHHHHHHHT-TEECEEECTTCHHHHHHTTCSCEEEEECC
T ss_pred hcCCCeEEecCCCcCCEEEE-EECCC------------CHHHHHHHHhhC-CcEEEeccccchHHHHhcCCCCeEEEEee
Confidence 99888988877 6777655 66532 677888777554 9999998753 34689999999
Q ss_pred c--CHHHHHHHHHHHHHHHHhh
Q 012124 445 A--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 ~--~~~~i~~~l~~l~~~l~~~ 464 (470)
. ++++++++++.|+++++.+
T Consensus 384 ~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 384 MYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 7 8999999999999998765
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=300.47 Aligned_cols=334 Identities=16% Similarity=0.166 Sum_probs=258.2
Q ss_pred CCCeEEccCCCC-CCCChHHHHHHHHHHHHc-C--CCCCCCCcCc----HHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-G--FTRYTPNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~-~--~~~y~~~~g~----~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|+++|||+.|++ ++.+++.+.+++.+++.. + ...|....|. .+|++.+++++ |. ++.+++++++
T Consensus 63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~----g~----~~~i~~~sGs 134 (427)
T 2w8t_A 63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY----GT----TGAIVFSTGY 134 (427)
T ss_dssp TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH----TC----SEEEEESCHH
T ss_pred CceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh----CC----CceEEecCcH
Confidence 557899999985 445678899999988865 3 2233334454 55666666654 53 2455555666
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC----CceEEEEcCCCCCc
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPT 240 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPt 240 (470)
+++..++.+++++||.|+++.|+|.++...++..|++++.++. +|++.|++++++ ++++|++++++|||
T Consensus 135 ~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~~n~t 207 (427)
T 2w8t_A 135 MANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGVYSML 207 (427)
T ss_dssp HHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESEETTT
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCC
Confidence 7898899999999999999999999999999999999998874 589999998865 78899999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc-cCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
|.+++ +++|.++|++| |++||+||+|+.+.++.... .+.. ++-..+.+++++||||.+|++| ||+++++++
T Consensus 208 G~~~~---l~~l~~l~~~~-g~~li~Dea~~~~~~~~~g~-~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~~l 279 (427)
T 2w8t_A 208 GDIAP---LKEMVAVAKKH-GAMVLVDEAHSMGFFGPNGR-GVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHPK 279 (427)
T ss_dssp TEECC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTSC-CHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCTT
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCC-chHhhcCCCcCCcEEEecchhhhccCC---CEEEeCHHH
Confidence 99999 88999999999 99999999999987753222 2222 2212356899999999998666 999999988
Q ss_pred HHHHHHHh--hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeecc
Q 012124 320 VAACNKIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFS 396 (470)
Q Consensus 320 ~~~l~~~~--~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~ 396 (470)
++.+.... ...+.+.+++.+.++.++|+. .+..+++++.++++++++.+.|+++ |+.+. .+..+.++|+.++
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 354 (427)
T 2w8t_A 280 FEAVRLACRPYIFTASLPPSVVATATTSIRK----LMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLE 354 (427)
T ss_dssp GGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEES
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEEC
Confidence 88776542 123445677777666677764 2225678888999999999999888 88876 4414556888887
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.. +..++++.|.++ ||.+.|+..|+.+ +++|++++. +++++++++++|+++++++..
T Consensus 355 ~~~-----------~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 355 DQE-----------QAAMMWQALLDG-GLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp SHH-----------HHHHHHHHHHHT-TEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHH-----------HHHHHHHHHHHC-CeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 532 467888888877 9999999877643 589999996 999999999999999987653
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=296.37 Aligned_cols=332 Identities=17% Similarity=0.158 Sum_probs=260.5
Q ss_pred cCCCeEEccCCCCCC-CChHHHHHHHHHHHHc-CCC----CCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEPDF-DTPVLIAEAGINAIRE-GFT----RYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~-~~~~~~~~a~~~~~~~-~~~----~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.+|||+.|.|.- .+++.+.+++.+.+.. +.. .|. ...+..+||+++++++ |. + ++|++++|
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~-~~i~~~sG- 114 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GM--E-DAILYSSC- 114 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TC--S-EEEEESCH-
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CC--C-cEEEeCCh-
Confidence 456789999997632 1478899999988865 221 121 2456788999999886 43 3 56666665
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 237 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~ 237 (470)
++++..++++++++||.|++++|+|+.+...++..|++++.++. +|++.|++.+++ ++++|++++||
T Consensus 115 s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~ 187 (401)
T 1fc4_A 115 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 66888899999999999999999999888889999999998873 488999988864 78999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc-cccc-CCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEE
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIY-APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIA 314 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~-~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~ 314 (470)
||||.+++ +++|.++|+++ |++||+||+|+ ++.+ .+....+...+. .+.+++++||||.+ +.+| ||++
T Consensus 188 nptG~~~~---~~~i~~l~~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~--~~~di~~~s~sK~~~~~~g---G~~~ 258 (401)
T 1fc4_A 188 SMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASG---GYTA 258 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCT--TCCSEEEEESSSTTCSSSC---EEEE
T ss_pred CCCCCCCC---HHHHHHHHHHc-CCEEEEECcccccccCCCCCccHHHcCCC--cCCcEEEecchhhccCCCC---EEEE
Confidence 99999999 89999999999 99999999996 7653 333222223333 25679999999999 5443 9999
Q ss_pred cCHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 315 GPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 315 ~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++++++.+...... .+.+.+++.|.++.++++. ....++.+++++++++++.+.|+++ |+++. +..+.++|
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~ 332 (401)
T 1fc4_A 259 ARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIP 332 (401)
T ss_dssp ECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEE
T ss_pred cCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEE
Confidence 999999988775422 3557899999999888874 1224677888899999999999988 78776 45666689
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++.. +..++.+.|.++ ||.+.||..|+. .+++|++++. +++++++++++|++++++++
T Consensus 333 ~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 333 VMLGDAV-----------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp EEEECHH-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCChH-----------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9987532 567888888776 999999987764 3589999984 89999999999999998765
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=301.18 Aligned_cols=320 Identities=14% Similarity=0.154 Sum_probs=258.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
..++.+.+++.+.+.. .|++ ...++++++++++.+.+|. +++ +|++|+|+++++..++.+++++||+|++++
T Consensus 44 ~~~~~v~~a~~~~~~~---~~~~--~~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~ 116 (393)
T 1vjo_A 44 NAHPSVLQAMNVSPVG---HLDP--AFLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGV 116 (393)
T ss_dssp CCCHHHHHHHSSCCCC---TTSH--HHHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCHHHHHHHhccccc---ccCH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEc
Confidence 4577788777665432 4633 2568999999999988885 567 899999999999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|+++|+++ |+
T Consensus 117 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 190 (393)
T 1vjo_A 117 AGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GT 190 (393)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TC
T ss_pred CChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHc-CC
Confidence 99999 8888999999999999864 355899999999987 8999999999999999998 78999999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH----h-----------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----Q----------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~----~----------- 327 (470)
+||+||+|.. + ..... +.. .+.++++.|+||.++.++ |+||+++++++++.+... .
T Consensus 191 ~li~Dea~~~---g-~~~~~---~~~-~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
T 1vjo_A 191 LLLVDTVTSL---G-GVPIF---LDA-WGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGK 261 (393)
T ss_dssp EEEEECTTTT---T-TSCCC---TTT-TTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHH
T ss_pred EEEEECCccc---c-CcCCc---ccc-cCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhh
Confidence 9999999982 2 11112 222 356799999999997666 999999999988877432 0
Q ss_pred ----hhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCcc
Q 012124 328 ----SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYY 399 (470)
Q Consensus 328 ----~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~ 399 (470)
..... +++.+.|.++..+++.. .+.++++++++++++++++.+.|+++ |+++..+.+ +.++++.+|...
T Consensus 262 ~~~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 338 (393)
T 1vjo_A 262 YWGSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV 338 (393)
T ss_dssp HHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC
T ss_pred hhccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCCCC
Confidence 01223 67888999988888751 13457889999999999999999988 888876654 345777776432
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHHHHHHH
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~--~~~~~i~~~l~~l~~~l~ 462 (470)
+..++++.|.+++||.+.||..|..++++|+++ + .+++++++++++|+++++
T Consensus 339 -----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 339 -----------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp -----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred -----------CHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 678899988876699999999887789999995 3 377789999999998763
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=297.34 Aligned_cols=330 Identities=18% Similarity=0.173 Sum_probs=252.5
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCC--------CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFT--------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~--------~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+.|..+... .+|+.+++++.+.+.+... .|....+..++++++++++ | +++++|++|+|+++++.
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESIN 75 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEECCHHHHHH
Confidence 456666555 5688999999998875210 0222345678888888886 4 46789999999999999
Q ss_pred HHHHHhc----CCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 169 QAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 169 ~~~~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
++++++. ++||+|++++|+|+++...+ +..|++++.++++. ++.+|++.|++++++++++|++++|+||||
T Consensus 76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVG 153 (384)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTC
T ss_pred HHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCCCCcc
Confidence 9999997 79999999999999887655 77899999999864 456899999999988999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCC--EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~--~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
.+++ +++|.++|+++ | ++||+||+|+. +. ...+ +.. .+.++++.|+||.+|++| +||+++++++
T Consensus 154 ~~~~---~~~i~~l~~~~-~~~~~li~Dea~~~---~~-~~~~---~~~-~~~di~~~s~sK~~g~~G--~G~~~~~~~~ 219 (384)
T 1eg5_A 154 TIQP---VEDVTRIVKKK-NKETLVHVDAVQTI---GK-IPFS---LEK-LEVDYASFSAHKFHGPKG--VGITYIRKGV 219 (384)
T ss_dssp BBCC---HHHHHHHHHHH-CTTCEEEEECTTTT---TT-SCCC---CTT-TCCSEEEEEGGGGTSCTT--CEEEEECTTS
T ss_pred cccC---HHHHHHHHHhc-CCceEEEEEhhhhc---CC-cccC---chh-cCCCEEEecHHHhcCCCc--eEEEEEcCCC
Confidence 9999 78899999999 9 99999999972 22 1112 222 256799999999998778 7999998875
Q ss_pred --HHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEE
Q 012124 320 --VAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYL 391 (470)
Q Consensus 320 --~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~ 391 (470)
...+... .....++.+.+.|.++..+|+. ..++++++++.++++++.+.+.|++ +|+++..+.. +.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~ 295 (384)
T 1eg5_A 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTL 295 (384)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEE
T ss_pred ccccccccCcccccccCCCCChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEE
Confidence 2222110 1123456889999998888875 2467888999999999999999988 5888765531 2346
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHH
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTL 450 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i 450 (470)
++.+++. +..++.+.|.+ +||.+.+|..|+. ++++||+++. +++++
T Consensus 296 ~~~~~~~------------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 362 (384)
T 1eg5_A 296 SVSFPNI------------RGSTLQNLLSG-YGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (384)
T ss_dssp EEECTTC------------CHHHHHHHHHH-TTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred EEEeCCC------------CHHHHHHHHhh-CCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHH
Confidence 6666642 67788888765 5999999987743 3689999994 89999
Q ss_pred HHHHHHHHHHHHhhCC
Q 012124 451 QAAVERIKKGLLTLRP 466 (470)
Q Consensus 451 ~~~l~~l~~~l~~~~~ 466 (470)
++++++|++++++++.
T Consensus 363 ~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 363 DYFLKKIEEILSFLDL 378 (384)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988765
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=296.55 Aligned_cols=316 Identities=16% Similarity=0.172 Sum_probs=239.9
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCcCcH---HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~-----~~~~~y~~~~g~~---~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
..++.++|++.+++.+.+++.+.+. .....|+. .|.+ +|++++++++ |. +++++++|+++++.
T Consensus 21 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~----g~----~~~i~~~~g~~ai~ 91 (404)
T 1e5e_A 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE----KT----EACVATSSGMGAIA 91 (404)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh----CC----CcEEEeCChHHHHH
Confidence 4688999999887666665555543 23466855 6666 8899999886 32 37888888899999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
.++.+++++||+|++++|+|+++.. .++..|++++.++.+ |++.|++++++++++|++++|+||||.++
T Consensus 92 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~NptG~v~ 164 (404)
T 1e5e_A 92 ATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANPTLKII 164 (404)
T ss_dssp HHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred HHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCCCCccc
Confidence 9999999999999999999999888 788899999999873 78899999998999999999999999999
Q ss_pred CHHHHHHHHHHHHh-CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-
Q 012124 245 PKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA- 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~- 321 (470)
+ +++|+++|++ + |++||+|++|..+.+.. ++ . .++++++.|+||.++++|+|+ ||+++++++++
T Consensus 165 ~---l~~i~~la~~~~-~~~li~De~~~~~~~~~----~~-~----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~ 231 (404)
T 1e5e_A 165 D---MERVCKDAHSQE-GVLVIADNTFCSPMITN----PV-D----FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQ 231 (404)
T ss_dssp C---HHHHHHHHHTST-TCEEEEECTTTCTTTCC----GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHH
T ss_pred C---HHHHHHHHHhhc-CCEEEEECCCchhhhCC----cc-c----cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHH
Confidence 8 8999999999 9 99999999999876531 22 1 357799999999998899998 99999999888
Q ss_pred HHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--------------CCCCeecCCC
Q 012124 322 ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE--------------LEGVKMSEPQ 386 (470)
Q Consensus 322 ~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--------------~~g~~~~~~~ 386 (470)
.+......+ ..+.+++.|.++...++. ....+++. .++.+.+.+.|++ +||+++..++
T Consensus 232 ~l~~~~~~~~g~~~~~~~~~~~~~~l~~---~~~~~~~~----~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~ 304 (404)
T 1e5e_A 232 IRMVGIKDITGSVISPHDAWLITRGLST---LNIRMKAE----SENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQ 304 (404)
T ss_dssp HHHTCCCCCCCCCCCHHHHHHHHHHHTT---HHHHHHHH----HHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhHhH---HHHHHHHH----HHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhh
Confidence 777766555 566889999988888874 12223222 2333333333332 3445444443
Q ss_pred ----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---------------------------
Q 012124 387 ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--------------------------- 435 (470)
Q Consensus 387 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--------------------------- 435 (470)
++|+.| ++++ ..+.+.+++++.|| +.+|..|+.
T Consensus 305 ~~~~g~~~~~-~~~~--------------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~ 368 (404)
T 1e5e_A 305 MRMYGSMITF-ILKS--------------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 368 (404)
T ss_dssp CSSCCSEEEE-EETT--------------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCC
T ss_pred CCCCceEEEE-EeCC--------------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCC
Confidence 778777 7753 22334456677788 666655542
Q ss_pred CCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 436 DTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 436 ~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++++|+|++. +++++++++|+++++.+.+
T Consensus 369 ~~~iRis~g~--e~~~~li~~l~~al~~~~~ 397 (404)
T 1e5e_A 369 DGMIRLSVGI--EDADELIADFKQGLDALLR 397 (404)
T ss_dssp TTEEEEECCS--SCHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCC--CCHHHHHHHHHHHHHHHHH
Confidence 5789999998 7788888888888876543
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=299.42 Aligned_cols=335 Identities=15% Similarity=0.130 Sum_probs=255.4
Q ss_pred CCCeEEccCCCC-CCCChHHHHHHHHHHHHc-C------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 93 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-G------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 93 ~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~-~------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
|++++++..++. .+++++.+.+++.+.+.+ . ...|+...+..++|+++++++ | .+++|++|+|++
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~i~~~sG~~ 117 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH----Q---KEAALVFSSAYN 117 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT----T---CSEEEEESCHHH
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh----C---CCcEEEECCcHH
Confidence 456788988765 454566899999988865 2 123555567889999999986 3 257888888877
Q ss_pred HHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc----CCceEEEEcCCCC
Q 012124 165 QSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 238 (470)
Q Consensus 165 ~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~i~l~~p~n 238 (470)
++..++..+. .+||+|+++.|+|+++...++..|++++.++.+ |++.+++.++ +++++|++++|+|
T Consensus 118 -a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~~~n 189 (401)
T 2bwn_A 118 -ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYS 189 (401)
T ss_dssp -HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred -HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEecCcC
Confidence 6666666553 599999999999999999999999999999863 6788887775 5789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+++ +++|+++|++| |++||+||+|+...|+......+....-..+.+++++||||.++++| ||++++++
T Consensus 190 ptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~ 262 (401)
T 2bwn_A 190 MDGDFGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASAR 262 (401)
T ss_dssp TTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHH
T ss_pred CCCCcCC---HHHHHHHHHHc-CCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCHH
Confidence 9999999 88999999999 99999999999655543221111111111234799999999998788 99999999
Q ss_pred HHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 319 FVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
+++.+...... +..+++++.+.++.++++... ...+++++++++++++++.+.|+++ |+++..+.++ ++|+.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~ 338 (401)
T 2bwn_A 263 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPVVIG 338 (401)
T ss_dssp HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEEECC
T ss_pred HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEEEeC
Confidence 98887754332 233456678877777776421 2235788889999999999999888 8887777776 5888887
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC---CcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD---TCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~---~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+.. +..++.+.|++++||.+.|+..|+.+ +++|++++. +++++++++++|+++++++
T Consensus 339 ~~~-----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 339 DPV-----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp CHH-----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred ChH-----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 532 56788888875559999998877643 589999995 8999999999999887653
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=300.95 Aligned_cols=348 Identities=11% Similarity=0.083 Sum_probs=248.3
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCC---CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~---~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.++||+.|.+ ++. +++.+.+++.+++.... ..|.+..+..+|+++|++++. | . .+++|++|+|+++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~ 113 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSE 113 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHH
Confidence 4566899988874 333 57889999999886532 246677889999999999862 3 2 3489999999999
Q ss_pred HHHHHHH---HhcCCCCeEEEcCCCCCChHH-HHHHcCCE-------------EEEecCcC---CCCCccCHHhHhhhcc
Q 012124 166 SILQAVL---AVCSPGDEVIIPAPFWVSYPE-MARIADAT-------------PVILPTRI---SENFLLDPKVLESKLT 225 (470)
Q Consensus 166 al~~~~~---~l~~~gd~Vlv~~p~y~~~~~-~~~~~g~~-------------~~~v~~~~---~~~~~~d~~~l~~~l~ 225 (470)
++.++++ .+.++| .|++.+|+|+++.. .+...|.+ ++.++++. ..++.+|++.|+++++
T Consensus 114 a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~ 192 (426)
T 1sff_A 114 AVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 192 (426)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHH
Confidence 9999988 677776 89999999988654 56666653 66777643 1134578999999886
Q ss_pred -----CCceEEEE-cCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 226 -----EKSRLLIL-CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 226 -----~~~~~i~l-~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
+++++|++ ++++| || ..+|.+++++|.++|++| |++||+||+|.++.+.+.. ..+.. .+..+.+.|
T Consensus 193 ~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~-~~~~~----~~~~~di~s 265 (426)
T 1sff_A 193 NDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTL-FAMEQ----MGVAPDLTT 265 (426)
T ss_dssp HTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGG----TTSCCSEEE
T ss_pred hccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc-CCEEEEechhhccCcccch-hhhhh----cCCCCCEEE
Confidence 46677766 55678 99 789999999999999999 9999999999987654421 11111 122233559
Q ss_pred cCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--
Q 012124 299 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 376 (470)
Q Consensus 299 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 376 (470)
|||.++ +|+|+||+++++++++.+.......+++.+++.|.++.++|+.. .+ ....++++++++.+.+.|++
T Consensus 266 ~sK~~~-~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~~~~ 339 (426)
T 1sff_A 266 FAKSIA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF---EQ--ENLLQKANDLGQKLKDGLLAIA 339 (426)
T ss_dssp ECGGGG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-CCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 999998 59999999999998887764434456678999999998777631 11 12333444444555544443
Q ss_pred --CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHH
Q 012124 377 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQA 452 (470)
Q Consensus 377 --~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~ 452 (470)
++.+....+. |+++|+++++..... .....+..++++.|.++ ||.+.||..| ++++|++++ .+++++++
T Consensus 340 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~-gi~v~~~~~~--~~~iRi~~~~~~~~~~i~~ 412 (426)
T 1sff_A 340 EKHPEIGDVRGL-GAMIAIELFEDGDHN---KPDAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQ 412 (426)
T ss_dssp HTCTTEEEEEEE-TTEEEEEEBGGGCTT---SBCHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHH
T ss_pred HhCCCeEEEEEE-EEEEEEEEecCcccc---CCChHHHHHHHHHHHHC-CcEEecCCCC--CCEEEEECCccCCHHHHHH
Confidence 3333333444 667899985310000 00001456788888765 9999998764 689999987 39999999
Q ss_pred HHHHHHHHHHhhC
Q 012124 453 AVERIKKGLLTLR 465 (470)
Q Consensus 453 ~l~~l~~~l~~~~ 465 (470)
++++|++++++++
T Consensus 413 ~~~~l~~~l~~~~ 425 (426)
T 1sff_A 413 GLEIISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=296.00 Aligned_cols=328 Identities=18% Similarity=0.154 Sum_probs=252.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC----C---CCCC-CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----T---RYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~---~y~~-~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+.+.|+.+.+. +.|+.+.+++.+.+.... . .|.. ..+..++|+.+++++ | +++++|++|+|++++
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTG 88 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----C--CCHHHEEEeCChHHH
Confidence 45888888754 456788888888776421 1 3422 367788888888885 4 467799999999999
Q ss_pred HHHHHHHh-cCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 167 ILQAVLAV-CSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 167 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
+.++++++ +++||+|++++|+|+++... ++..|++++.++++.++++.+|++.|++.+++++++|++++|+||||
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCc
Confidence 99999999 89999999999999997654 46689999999986434567999999999998999999999999999
Q ss_pred cCCCHHHHHHHHHHHH----hCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 242 SVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~----~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
.+++ +++|.++|+ ++ |++||+|++|+... .... +.. .+.++++.|+||.+. +|.++||+++++
T Consensus 169 ~~~~---~~~i~~l~~~~~~~~-~~~li~Dea~~~g~----~~~~---~~~-~~~d~~~~s~~K~~~-~~~g~G~~~~~~ 235 (390)
T 1elu_A 169 QVLP---LAEIMAVCRRHQGNY-PVRVLVDGAQSAGS----LPLD---FSR-LEVDYYAFTGHKWFA-GPAGVGGLYIHG 235 (390)
T ss_dssp CBCC---HHHHHHHHHHCCSSS-CCEEEEECTTTBTT----BCCC---TTT-SCCSEEEEESSSTTC-CCTTCEEEEECT
T ss_pred eecC---HHHHHHHHhhhhhhc-CcEEEEEcccccCC----cCCC---hhh-cCCCEEEcccccccc-CCCceEEEEECH
Confidence 9999 889999999 99 99999999998421 1111 222 356799999999553 667799999998
Q ss_pred HHHHHHHHH----------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 318 HFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 318 ~~~~~l~~~----------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
++++.+... ......+++.+.+.++..+++.-. ...++++++++++++++.+.+.|+
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~ 314 (390)
T 1elu_A 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ-RQGTAEERYQAICQRSEFLWRGLN 314 (390)
T ss_dssp TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 887766432 122233456677776666665310 023478889999999999999999
Q ss_pred cCCCCeecC---CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHH
Q 012124 376 ELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTL 450 (470)
Q Consensus 376 ~~~g~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i 450 (470)
+++|+++.. +.++++.| +++... +..++.+.|.++ ||.+.+|. .++++|++++ .+++++
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~l~~~-gi~v~~~~---~~~~iRis~~~~~~~~~i 378 (390)
T 1elu_A 315 QLPHVHCLATSAPQAGLVSF-TVDSPL-----------GHRAIVQKLEEQ-RIYLRTIA---DPDCIRACCHYITDEEEI 378 (390)
T ss_dssp HSTTEEESCSSCCSSSEEEE-EECSSS-----------CHHHHHHHHHHT-TEECEEET---TTTEEEEECCTTCCHHHH
T ss_pred hcCCcEEecCccccccEEEE-EcCCCC-----------CHHHHHHHHHHC-CEEEEecC---CCCeEEEecccCCCHHHH
Confidence 888888774 35666555 876432 678899888655 99999986 3579999986 389999
Q ss_pred HHHHHHHHH
Q 012124 451 QAAVERIKK 459 (470)
Q Consensus 451 ~~~l~~l~~ 459 (470)
++++++|++
T Consensus 379 ~~~~~~l~~ 387 (390)
T 1elu_A 379 NHLLARLAD 387 (390)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998864
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=298.05 Aligned_cols=325 Identities=12% Similarity=0.092 Sum_probs=249.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCcCcHHHHHH-HHHHHHHHcCCCCCCCcEEEecCh
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSA-ICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---------~~~y~~~~g~~~lr~~-ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
++++.|..|.+..++++.+.+++.+.+... ...|.+..+..++++. +++++ |. + +|++|+|+
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~----~~--~--~v~~~~g~ 78 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL----GC--D--VARVTNGA 78 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT----TS--S--EEEEESSH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc----CC--C--EEEEeCCh
Confidence 357888887766677889999998877542 1234567889999999 99986 32 2 99999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEec--CcCCCCCccCHHhHhhhcc-----CCceEEEEcCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--TRISENFLLDPKVLESKLT-----EKSRLLILCSP 236 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~-----~~~~~i~l~~p 236 (470)
++++.+++++++++||+|++++|+|+++...++..|++++.++ .+. ++.+|++.|+++++ +++++|++++|
T Consensus 79 t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 79 REAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 9999999999999999999999999999999999999999999 653 46699999999997 78999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|.++|++| |++||+|++|+.+... .++..+ +..++++||||.++ ++.|+||++++
T Consensus 157 ~nptG~~~~---~~~i~~~~~~~-~~~li~D~a~~~~~~~----~~~~~~----~~di~~~s~sK~~~-~~~~~G~~~~~ 223 (371)
T 2e7j_A 157 DGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGRMP----VSLKEI----GADFIVGSGHKSMA-ASGPIGVMGMK 223 (371)
T ss_dssp CTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTTBC----CCHHHH----TCSEEEEEHHHHSS-CCSSCEEEEEC
T ss_pred CCCCcccCC---HHHHHHHHHHc-CCeEEEECccccCCCC----CChhhc----CCCEEEecCCcCCC-CCCCcEEEEEe
Confidence 999999999 68999999999 9999999999975432 222222 34499999999997 55699999999
Q ss_pred HHHHHH-HHHHhh--hc-----cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH--HHHHHHHHHHhccCCCCeecCCC
Q 012124 317 KHFVAA-CNKIQS--QF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAF--RERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 317 ~~~~~~-l~~~~~--~~-----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+++++. +..... .. ...++...+.++..+++. ... +..+++ +++++++.+.|+++ |+++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~---~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 296 (371)
T 2e7j_A 224 EEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRE---RIKRWDEEVEKARRFAAEMEKL-GIKQLGDN 296 (371)
T ss_dssp TTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHH---HGGGHHHHHHHHHHHHHHHHHT-TCEEESSS
T ss_pred chhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHc-CcEEecCC
Confidence 988776 654332 11 334455555555555553 111 566667 88888999999888 88887663
Q ss_pred --ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEE-EEee---cCHHHHHHHH
Q 012124 387 --GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIR-ISYA---ASLTTLQAAV 454 (470)
Q Consensus 387 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~------~~~iR-ls~~---~~~~~i~~~l 454 (470)
.+.++|++++ +..++.+.|. ++||.+.| ..|.. ++++| ++++ .+++++++++
T Consensus 297 ~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~ 360 (371)
T 2e7j_A 297 PHNHDLMFFHAE--------------VLYEISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVL 360 (371)
T ss_dssp SCCSSEEEEECH--------------HHHHHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHH
T ss_pred CccCceEEEECC--------------CHHHHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHH
Confidence 3446888885 2567888776 55999988 43322 67999 9999 5899999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
++|+++++++
T Consensus 361 ~~l~~~~~~~ 370 (371)
T 2e7j_A 361 NAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998765
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=289.55 Aligned_cols=333 Identities=12% Similarity=0.064 Sum_probs=248.7
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
+.|..+.+. .+|+.+++++.+.+.. ...|....+..++|+.+++++ |. ++++|++|+|+++++.++++++++
T Consensus 10 ~yl~~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g~--~~~~v~~t~g~t~a~~~~~~~~~~ 81 (392)
T 2z9v_A 10 VITLTAGPV-NAYPEVLRGLGRTVLY-DYDPAFQLLYEKVVDKAQKAM----RL--SNKPVILHGEPVLGLEAAAASLIS 81 (392)
T ss_dssp SEECSSSCC-CCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHHT----TC--SSCCEEESSCTHHHHHHHHHHHCC
T ss_pred ceeecCCCc-CCCHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHh----CC--CCCEEEEeCCchHHHHHHHHHhcC
Confidence 344444443 4577888887765432 111112234566777777764 53 568999999999999999999999
Q ss_pred CCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc--cCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l--~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+||+|++++|+|+++ ...++..|++++.++++.+ +.+|++.|++++ .+++++|++++|+||||.+++ +++|
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i 156 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDAI 156 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHHH
Confidence 999999999999875 3445668999999998643 358999999999 458899999999999999999 7899
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-----
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----- 327 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~----- 327 (470)
.++|++| |++||+|++|+.. .....+.. .+..+++.|+||.++ ++.++||+++++++++.+....
T Consensus 157 ~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~sK~~~-~~~g~G~l~~~~~~~~~l~~~~~g~~~ 226 (392)
T 2z9v_A 157 GALVSAH-GAYLIVDAVSSFG----GMKTHPED----CKADIYVTGPNKCLG-APPGLTMMGVSERAWAKMKANPLAPRA 226 (392)
T ss_dssp HHHHHHT-TCEEEEECTTTBT----TBSCCGGG----GTCSEEEECSSSTTC-CCSCCEEEEECHHHHHHHHTCTTSCCS
T ss_pred HHHHHHc-CCeEEEEcccccC----Cccccccc----ccceEEEecCccccc-CCCceeEEEECHHHHHHhhhccCCCCc
Confidence 9999999 9999999999742 11112222 245689999999663 3334699999999988776421
Q ss_pred ---------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeecCCC----c
Q 012124 328 ---------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----G 387 (470)
Q Consensus 328 ---------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~ 387 (470)
.....+++...+.++..+++. ..++ +++++++++++++++.+.|+++ |+++..|. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 302 (392)
T 2z9v_A 227 SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL---YLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSIAS 302 (392)
T ss_dssp STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBC
T ss_pred eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccccC
Confidence 112234556666666666654 2344 7788899999999999999888 88776533 3
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-e--cCHHHHHHHHHHHHHHHHhh
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-A--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
+.++|+.+|+.. +..++.+.|.+++||.+.+|..+..++++|+++ + .+++++++++++|+++++++
T Consensus 303 ~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 303 PTTTAVRTPDGV-----------DEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp TTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCC-----------CHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 566888887432 678899988876699999998766678999995 5 39999999999999999887
Q ss_pred CCC
Q 012124 465 RPG 467 (470)
Q Consensus 465 ~~~ 467 (470)
+..
T Consensus 372 ~~~ 374 (392)
T 2z9v_A 372 GRK 374 (392)
T ss_dssp TCC
T ss_pred CCC
Confidence 643
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=289.30 Aligned_cols=332 Identities=17% Similarity=0.121 Sum_probs=251.4
Q ss_pred cCCCeEEccCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCC----cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPN----AGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~-~~~~~~~~~~a~~~~~~~~---~~~y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.++||+.+++ ++..++.+.+++.+++.+. ...|... ....++++.+++++ |. +..++++++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 128 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GF----DECLLSQSG 128 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TC----SEEEEESCH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CC----CeEEEecch
Confidence 3567899988763 3556899999999998762 2222222 33456666666664 43 234455555
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCccc
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 242 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~ 242 (470)
++++..++++++++||.|++++|+|+.+...++..|++++.++. +|++.|++++++ ++++|++++|+||||.
T Consensus 129 t~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~nptG~ 201 (409)
T 3kki_A 129 WNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYSTLGT 201 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTTTCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCC
Confidence 79999999999999999999999999999999999999998875 589999999965 5899999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
+++ +++|.++|++| |++||+||+|+.+.++..........+...+.+|++.||||.++++ .||+++++++++.
T Consensus 202 ~~~---l~~l~~la~~~-~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~ 274 (409)
T 3kki_A 202 IAP---LAELVNISKEF-GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRC 274 (409)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGT
T ss_pred cCC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHH
Confidence 999 88999999999 9999999999986554222222211221134569999999999844 4999999998887
Q ss_pred HHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+...... +....+++.+.++.+.++. .+..+++++.++++++++.+.|+++ |+.+. ..+.++|+.++...
T Consensus 275 ~~~~~~~~~~~~~~~~~~~aa~~aal~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~- 346 (409)
T 3kki_A 275 VPFISYPAIFSSTLLPYEAAGLETTLEI----IESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDER- 346 (409)
T ss_dssp HHHHCHHHHHSBCCCHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESHH-
T ss_pred HHHhCcCccccCCCcHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCHH-
Confidence 7764332 2334566666677777764 2233678889999999999999988 77665 35666888887542
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++++.|+++ ||.+.|+..+.. .+++|++++. +++++++++++|+++++..
T Consensus 347 ----------~~~~~~~~L~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 347 ----------NTEKVRDYLESN-GVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp ----------HHHHHHHHHHHT-TEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ----------HHHHHHHHHHHC-CceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 466788888877 999988654322 4689999985 8999999999999999864
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-35 Score=283.61 Aligned_cols=321 Identities=13% Similarity=0.057 Sum_probs=243.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 106 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
.++|+.+++++.+.+.. ...|....+..++|+++++++ | +++++|++|+|+++++.+++++++++||+|++++
T Consensus 10 ~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~ 82 (352)
T 1iug_A 10 VRLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPV 82 (352)
T ss_dssp CCCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHhccCCCC-ccCHHHHHHHHHHHHHHHHHh----C--CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEe
Confidence 34578888888776532 111111234567788887775 4 3568999999999999999999999999999999
Q ss_pred CCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC-CE
Q 012124 186 PFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RL 262 (470)
Q Consensus 186 p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~-~~ 262 (470)
|+|+++. ..++..|++++.++++. ++.+|++.+++ +++++|++++|+||||.+++ +++|.++|++|+ |+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~ 154 (352)
T 1iug_A 83 YGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEG 154 (352)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTC
T ss_pred CCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCC
Confidence 9999865 45566899999999864 34589999887 67899999999999999999 778899998873 69
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH---------HHH----H-hh
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA---------CNK----I-QS 328 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~---------l~~----~-~~ 328 (470)
+||+|++|+.. .....+.. .+..+++.|+||.++ .+.++||+++++++++. +.. . ..
T Consensus 155 ~li~D~a~~~~----~~~~~~~~----~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
T 1iug_A 155 LVGADMVTSLL----VGEVALEA----MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEG 225 (352)
T ss_dssp EEEEECTTTBT----TBCCCSGG----GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT
T ss_pred EEEEECCcccc----Ccceeccc----cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccC
Confidence 99999999731 11112221 245688999999553 22348999999987754 221 1 12
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccCccCCcccCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 407 (470)
....+.+...+.++.++++. ..+++++++++++++++++.+.|+++ |+++..+. .+.++|+++++..
T Consensus 226 ~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-------- 293 (352)
T 1iug_A 226 ESAWTPAINLVLAVAAVLEE---VLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-------- 293 (352)
T ss_dssp CCSSCCCHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC--------
T ss_pred CCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC--------
Confidence 23445677777777777764 13347888999999999999999988 88887764 5666888887432
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+..++.+.|.++ ||.+.+|..+..++++|++++. +++++++++++|+++++++.+
T Consensus 294 ---~~~~~~~~l~~~-gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 350 (352)
T 1iug_A 294 ---PYARVKEAFAQR-GAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352)
T ss_dssp ---CHHHHHHHHHTT-TEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CHHHHHHHHHHC-CEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 678899988766 9999998754456899999996 789999999999999988754
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=291.94 Aligned_cols=329 Identities=14% Similarity=0.140 Sum_probs=253.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHHHHhcCC
Q 012124 101 AGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSP 177 (470)
Q Consensus 101 ~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~~~l~~~ 177 (470)
.+.++..+++.+.+++.+.+. ..|.+. ....++|+++++++. ++++ +|++|+|+++++..++.+++++
T Consensus 22 ~~~~p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~~~ 92 (396)
T 2ch1_A 22 MGPGPSNCSKRVLTAMTNTVL---SNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLLEE 92 (396)
T ss_dssp CSSSSCCCCHHHHHHTTSCCC---CTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHCCT
T ss_pred ecCCCCCCCHHHHHHhccccc---cCCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhcCC
Confidence 344444567777777665432 235332 236788888888863 3566 8999999999999999999999
Q ss_pred CCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 178 GDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 178 gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
||+|++++|+|+++. ..++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|.+
T Consensus 93 gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~ 167 (396)
T 2ch1_A 93 GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQ 167 (396)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHH
T ss_pred CCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHHHH
Confidence 999999999999985 47788999999999864 456899999999987 8999999999999999999 889999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-------
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------- 327 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~------- 327 (470)
+|+++ |++||+|++|.. + ..... +.. .+..+++.|++|.++ ++.++||+++++++++.+...+
T Consensus 168 l~~~~-~~~li~Dea~~~---g-~~~~~---~~~-~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (396)
T 2ch1_A 168 ICHQH-DCLLIVDAVASL---C-GVPFY---MDK-WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFY 237 (396)
T ss_dssp HHHHT-TCEEEEECTTTB---T-TBCCC---TTT-TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGG
T ss_pred HHHHc-CCEEEEEccccc---c-CCccc---hhh-cCcCEEEEcCCcccc-CCCCeEEEEECHHHHHhhhhccCcccceE
Confidence 99999 999999999983 2 11112 222 233477789999875 4456799999998887764310
Q ss_pred ----------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce---
Q 012124 328 ----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA--- 388 (470)
Q Consensus 328 ----------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g--- 388 (470)
.....+.+...|.++.++++.. .++++++++++++++++++.+.|+++ |+++..+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 314 (396)
T 2ch1_A 238 WDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRL 314 (396)
T ss_dssp GCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBC
T ss_pred echHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccC
Confidence 1122446777888888888741 13457888999999999999999988 8887766653
Q ss_pred -EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHHhh
Q 012124 389 -FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.++|+++|... +..++.++|++++||.+.+|..+..++++|+++ .. +++++++++++|+++++++
T Consensus 315 ~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 315 PTVTGIMIPKGV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp TTEEEEECCTTC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 36788886432 678899988876699999987666678999999 32 8899999999999999887
Q ss_pred CCC
Q 012124 465 RPG 467 (470)
Q Consensus 465 ~~~ 467 (470)
++.
T Consensus 384 ~~~ 386 (396)
T 2ch1_A 384 HPD 386 (396)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=284.56 Aligned_cols=320 Identities=14% Similarity=0.132 Sum_probs=241.1
Q ss_pred CChHHHHHHHHHHHHcCCC----CCCCC----cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc---
Q 012124 107 DTPVLIAEAGINAIREGFT----RYTPN----AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--- 175 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~----~y~~~----~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~--- 175 (470)
++|+.+++++.+.+.+... .|... .+..+++++++++ +| +++++|++|+|+++++.+++.++.
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g--~~~~~v~~~~g~t~a~~~~~~~l~~~~ 84 (382)
T 4eb5_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKL----VN--GGGGTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHH----HT--CTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence 4688999999998875211 13221 2345556666655 45 356899999999999999999987
Q ss_pred -CCCCeEEEcCCCCCChHHHHHH---cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 176 -SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 176 -~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
++||+|++++|+|+++...+.. .|++++.++++. ++.+|++.|++++++++++|++++|+||||.+++ +++
T Consensus 85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~ 159 (382)
T 4eb5_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEE 159 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHH
T ss_pred cCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccCCCccccCC---HHH
Confidence 8999999999999988776653 799999999864 3568999999999888999999999999999999 789
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH-HHHHHH----H
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNK----I 326 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~-~~~l~~----~ 326 (470)
|+++|++| |++ |+|++|+. + .....+.. .+.++++.||||.+|.+| +||++++++. +..+.. .
T Consensus 160 i~~l~~~~-~~~-i~D~a~~~---g-~~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~ 227 (382)
T 4eb5_A 160 ISEVLAGK-AAL-HIDATASV---G-QIEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQE 227 (382)
T ss_dssp HHHHHTTS-SEE-EEECTTTB---T-TBCCCHHH----HTCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTG
T ss_pred HHHHHHHC-CCE-EEEcchhc---C-CcccCccc----cCCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCcc
Confidence 99999999 999 99999983 1 11112222 245689999999987556 7999987763 111100 0
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCccCCcc
Q 012124 327 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEA 403 (470)
Q Consensus 327 ~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~ 403 (470)
......+++...+.++..+++. ..+++++++++++++++++.+.|++++|+++..+.+ +.++++.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 299 (382)
T 4eb5_A 228 NGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI----- 299 (382)
T ss_dssp GGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTS-----
T ss_pred ccccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCc-----
Confidence 1122334566666666666664 245678889999999999999999988888776542 33477777642
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+..++.+.|.++ ||.+.+|..|.. ++++|++++. +++++++++++|+++++
T Consensus 300 -------~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (382)
T 4eb5_A 300 -------EGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp -------CHHHHHHHHHHH-TCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHC-CEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 678898888754 999999876432 4789999994 89999999999999988
Q ss_pred hhC
Q 012124 463 TLR 465 (470)
Q Consensus 463 ~~~ 465 (470)
+++
T Consensus 372 ~~~ 374 (382)
T 4eb5_A 372 RLR 374 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-35 Score=288.41 Aligned_cols=331 Identities=13% Similarity=0.155 Sum_probs=251.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC--CcCcHHHHHHHHHHHHHHcCCCCCCC-cEEEecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~-~i~it~g~~~al~~~~ 171 (470)
..+.++.|. .++|+.+.+++.+.+.. .|.+ ..+..++++.+++++ |. +++ +|++|+|+++++.+++
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~----g~--~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYLF----QT--NNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHHH----TC--CCSEEEEESSCHHHHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHHh----CC--CCCcEEEEcCcHHHHHHHHH
Confidence 346666663 45678888887765432 2322 235566777777665 53 454 8999999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
.+++++||+|++++|+|+++. ..++..|++++.++++.+ +.+|++.|++++++ ++++|++++|+||||..++
T Consensus 88 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~--- 162 (393)
T 2huf_A 88 CNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVG--QSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG--- 162 (393)
T ss_dssp HHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred HHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCC--CCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---
Confidence 999999999999999998843 345678999999998643 45899999999987 8999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHHHHh
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
+++|.++|++| |++||+|+++... ..... +.. .+.++++.|+||.+ |++|+ ||+++++++++.+....
T Consensus 163 l~~i~~~~~~~-~~~li~D~a~~~~----~~~~~---~~~-~~~d~~~~s~sK~l~g~~G~--G~~~~~~~~~~~~~~~~ 231 (393)
T 2huf_A 163 LEGVGALCHQH-NCLLIVDTVASLG----GAPMF---MDR-WEIDAMYTGSQKVLGAPPGI--TPVSFSHRAVERYKRRN 231 (393)
T ss_dssp CTTHHHHHHHT-TCEEEEECTTTBT----TBCCC---TTT-TTCSEEECCSSSTTCCCSSC--EEEEECHHHHHHHHTCS
T ss_pred HHHHHHHHHHc-CCEEEEEcccccC----CCCcc---hhh-cCccEEEECCCcccccCCCe--EEEEECHHHHHHHhhcC
Confidence 88999999999 9999999998631 11111 222 35679999999975 55675 99999999998876541
Q ss_pred ---hh--------------------ccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 328 ---SQ--------------------FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 328 ---~~--------------------~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.. ...+++...+.++.++++. ..+ .+++++++++++++++.+.|+++ |+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 307 (393)
T 2huf_A 232 TKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM---ACEEGLPALIARHEDCAKRLYRGLQDA-GFELY 307 (393)
T ss_dssp SCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred CCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 00 1123556666666666664 122 37788889999999999999988 88776
Q ss_pred CCC---ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHH
Q 012124 384 EPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERI 457 (470)
Q Consensus 384 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l 457 (470)
.+. +++++|++++... +..++.+.|++++||.+.+|..|..++++|+++ +. +++++++++++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l 376 (393)
T 2huf_A 308 ADPKDRLSTVTTIKVPQGV-----------DWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVF 376 (393)
T ss_dssp SCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEcCCCC-----------CHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHH
Confidence 653 3556788886432 678899888876699999998776678999999 52 688999999999
Q ss_pred HHHHHhhCCC
Q 012124 458 KKGLLTLRPG 467 (470)
Q Consensus 458 ~~~l~~~~~~ 467 (470)
++++++++..
T Consensus 377 ~~~~~~~~~~ 386 (393)
T 2huf_A 377 QEAVAAVKPD 386 (393)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHcCCC
Confidence 9999987754
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=281.13 Aligned_cols=323 Identities=13% Similarity=0.120 Sum_probs=245.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 106 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
.++++.+++++.+.+.. .+ .....++.+.+.+.+.+.+|.+.++++|++|+|+++++. ++..++++||+|++++
T Consensus 11 ~~~~~~v~~a~~~~~~~---~~--~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~ 84 (384)
T 3zrp_A 11 TTIKEDVLVAGLENNVG---FT--SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVS 84 (384)
T ss_dssp SCCCHHHHHHTTCCSCC---TT--SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEEC
T ss_pred CCCCHHHHHHhhccccc---cc--cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEec
Confidence 34577777776654321 12 122234444444444444565433389999999999999 9999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|.++|++| |+
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 158 (384)
T 3zrp_A 85 NGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY-VE 158 (384)
T ss_dssp SSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG-EE
T ss_pred CCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc-CC
Confidence 99965 5566678999999999875 345899999999976 8999999999999999999 88899999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH-------------HHHhh-
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------------NKIQS- 328 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l-------------~~~~~- 328 (470)
+||+|++|+.... ... +.. .+..+++.|+||.++ ++.++||+++++++++.+ .....
T Consensus 159 ~li~D~a~~~~~~----~~~---~~~-~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (384)
T 3zrp_A 159 LIVVDGVSSVGAE----EVK---AEE-WNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPV 229 (384)
T ss_dssp EEEEECTTTTTTS----CCC---TTT-TTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHH
T ss_pred EEEEECcccccCc----ccc---ccc-cCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 9999999875221 111 121 356699999999885 445599999999998877 32221
Q ss_pred --------hcc-CCCChHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEeee
Q 012124 329 --------QFT-SGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFID 394 (470)
Q Consensus 329 --------~~~-~~~~~~~q~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~ 394 (470)
... .+++...+.++..+++. .. ..+++++++++++++++.+.|+++ |+++..+. .++++|+.
T Consensus 230 ~~~~~~~~~~~~g~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 305 (384)
T 3zrp_A 230 MRGAEEGKAAYFATPPVHVILQLAEAFRL---IEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTGVI 305 (384)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEEEE
T ss_pred HHhhcccCCCcCCCCCHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEEEE
Confidence 111 24566666666666653 12 337889999999999999999988 88877666 46678888
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
++.. +..++.+.|.++ ||.+.+|..+.. +++|+++.. +++++++++++|++++++++..
T Consensus 306 ~~~~------------~~~~~~~~l~~~-gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 366 (384)
T 3zrp_A 306 LKVA------------DPQKVLAGTVNE-GVEFAPGVHPAF-KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEP 366 (384)
T ss_dssp CSSS------------CHHHHHHHHHTT-TCCCEECCCTTC-CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCC------------CHHHHHHHHHHC-CEEEecCCCCCc-CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8763 788999988766 999999875433 899999885 8999999999999999987654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=283.79 Aligned_cols=328 Identities=13% Similarity=0.053 Sum_probs=248.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC----CCCC----CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYT----PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~y~----~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+.+.|..+.+. ++|+.+.+++.+.+.... ..|. ...+..++++++++++ | +++++|++|+|++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----N--ADPGGVVLGADRAVL 98 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCChHHH
Confidence 35788887776 568889999998886532 1232 1245567777777775 4 366899999999999
Q ss_pred HHHHHHHh---cCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC
Q 012124 167 ILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239 (470)
Q Consensus 167 l~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP 239 (470)
+.+++.++ +++||+|++++|+|+++...+.. .|++++.++++++ ++.+|++.|++++++++++|++++|+||
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~np 177 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISKSTRLVAVNSASGT 177 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCCCceEEEEeCCcCC
Confidence 99999887 78999999999999987665544 7999999998733 3468999999999989999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceee-EEEcCHH
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKH 318 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~ 318 (470)
||.+++ +++|.++|+++ |++||+|++|+.. .....+.. .+..+++.|+||.+| ++ +| |++++++
T Consensus 178 tG~~~~---l~~i~~l~~~~-~~~li~D~a~~~g----~~~~~~~~----~~~d~~~~s~~K~~g-~~--~G~~~~~~~~ 242 (406)
T 3cai_A 178 LGGVTD---LRAMTKLVHDV-GALVVVDHSAAAP----YRLLDIRE----TDADVVTVNAHAWGG-PP--IGAMVFRDPS 242 (406)
T ss_dssp TCBBCC---CHHHHHHHHHT-TCEEEEECTTTTT----TCCCCHHH----HCCSEEEEEGGGGTS-CS--CEEEEESCHH
T ss_pred ccccCC---HHHHHHHHHHc-CCEEEEEcccccC----CCCCCchh----cCCCEEEeehhhhcC-CC--cCeEEEEehH
Confidence 999999 78899999999 9999999999742 11112222 245689999999887 65 89 9999998
Q ss_pred HHHHHHHHhh---------hccCCCChHHHHHHHHHHhcCCC-C-----------hHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 319 FVAACNKIQS---------QFTSGASSISQKAGVAALGLGYA-G-----------GEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 319 ~~~~l~~~~~---------~~~~~~~~~~q~a~~~~l~~~~~-~-----------~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
+++.+..... ....+.+...+.++..+++.... + ++++++++++++++++++.+.|+++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8876654321 11233555555555555543100 0 1167889999999999999999998
Q ss_pred CCCeecCCC---ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------CCCC---CCcEEEEeec
Q 012124 378 EGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------AFGD---DTCIRISYAA 445 (470)
Q Consensus 378 ~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~------~f~~---~~~iRls~~~ 445 (470)
+|+++..+. ++ ++++.++.. +..++.+.|.+ .||.+.+|. .|+. .+++|++++.
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~ 388 (406)
T 3cai_A 323 PLVMLIGRPEAQIP-VVSFAVHKV------------PADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGAVTVGLAH 388 (406)
T ss_dssp TTEEECCCCSSBCS-EEEEEETTB------------CHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCCEEEECCT
T ss_pred CCeEEcCCccccCC-EEEEEECCc------------CHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCeEEEEeec
Confidence 888877653 45 578888743 67888888865 599999987 3332 4789999997
Q ss_pred --CHHHHHHHHHHHHH
Q 012124 446 --SLTTLQAAVERIKK 459 (470)
Q Consensus 446 --~~~~i~~~l~~l~~ 459 (470)
+++++++++++|++
T Consensus 389 ~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 389 YSTMAEVDQLVRALAS 404 (406)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 78999999998864
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=283.73 Aligned_cols=319 Identities=13% Similarity=0.122 Sum_probs=243.4
Q ss_pred CCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 93 GVSVIRLAAGEP--DFD-TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 93 ~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
|+.++||+.|.| .+. +++.+.+++.+.+.+. ...| +..+..+|++++++++ |. +++|++|+|++++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~a 98 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFFANSGTES 98 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEEESSHHHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEEeCchHHH
Confidence 456799999875 455 6789999999988653 2356 5567788888888874 53 3899999999999
Q ss_pred HHHHHHH---hc---CCC-CeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhccC
Q 012124 167 ILQAVLA---VC---SPG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 167 l~~~~~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
+.++++. +. +|| |+|++++|+|+++...+...+.. +..++. +|++.|++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~ 171 (375)
T 2eh6_A 99 VEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDE 171 (375)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCT
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcC
Confidence 9999875 35 788 99999999999987765544322 233332 489999999988
Q ss_pred CceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 227 KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
++++|++++++||||.+ .+.+++++|+++|++| |++||+||+|.++.+.+.. .++..+.. ...+ .||||.++
T Consensus 172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~-~~d~---~s~SK~~~- 244 (375)
T 2eh6_A 172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK-DVLLIIDEVQTGIGRTGEF-YAYQHFNL-KPDV---IALAKGLG- 244 (375)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCSE---EEECGGGG-
T ss_pred CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcc-hhhhhcCC-CCCE---EEEccccc-
Confidence 99999998899999998 4688999999999999 9999999999976543321 12232321 1222 28999998
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
+|+|+||+++++++++.+.......+++++++.|.++.++|+. .. +..++++++++++.+.|++++. ... +
T Consensus 245 ~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~~~~~~~~~l~~~L~~~~~-~~~-~ 315 (375)
T 2eh6_A 245 GGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE----VE---KLLPHVREVGNYFKEKLKELGK-GKV-K 315 (375)
T ss_dssp TTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHTTS-SEE-E
T ss_pred CCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHhc-CCc-e
Confidence 8999999999998877765533344567789999888888764 12 6777888889999999988743 222 3
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
..|+++|++++. +..++++.|.+ +||.+.|+. ++++|++++. +++++++++++|+++
T Consensus 316 ~~g~~~~~~~~~-------------~~~~~~~~l~~-~gi~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 316 GRGLMLGLELER-------------ECKDYVLKALE-KGLLINCTA----GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp EETTEEEEECSS-------------CCHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEcC-------------cHHHHHHHHHH-CCCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456778988864 45678888876 599999863 5789999873 899999999999875
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=282.60 Aligned_cols=328 Identities=15% Similarity=0.162 Sum_probs=252.1
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC-C-cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-N-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~-~-~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++|+.| |. .+++.+.+++.+.+. +.|+. . .+..++|+++++++ |.+.+++++++|+|+++++.+++++
T Consensus 5 ~~~~~~g-p~-~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG-PL-TTSRTVKEAMLFDSC---TWDDDYNIGVVEQIRQQLTALA----TASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS-SC-CCCHHHHHTTCCCCC---TTSHHHHTTTHHHHHHHHHHHH----CSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC-Cc-CCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHHHHh----CCCCcCcEEEEecChHHHHHHHHHH
Confidence 5889999 53 477888888776421 22211 1 67889999999987 3222346899999999999999999
Q ss_pred hcCCCCeEEEcC-CCCCC-hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC--CceEEEEcCCCCCcccCCCHHHH
Q 012124 174 VCSPGDEVIIPA-PFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLL 249 (470)
Q Consensus 174 l~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~--~~~~i~l~~p~nPtG~~~s~~~~ 249 (470)
++++||+|++.+ ++|+. +...++..|++++.++++. ++.+|++.|++++++ ++++|++++++||||.+++ +
T Consensus 76 ~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l 150 (366)
T 1m32_A 76 ALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---I 150 (366)
T ss_dssp SCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---H
T ss_pred hcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC---H
Confidence 999999988776 55544 5567788899999999864 345899999999964 5789999999999999999 7
Q ss_pred HHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh--
Q 012124 250 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-- 327 (470)
Q Consensus 250 ~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-- 327 (470)
++|.++|++| |++||+|++|+.... ... +.. .+.++++.|+||.++ .+.++||+++++++++.+....
T Consensus 151 ~~i~~l~~~~-~~~li~Dea~~~~~~----~~~---~~~-~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~ 220 (366)
T 1m32_A 151 DEVGALAHRY-GKTYIVDAMSSFGGI----PMD---IAA-LHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHSRS 220 (366)
T ss_dssp HHHHHHHHHH-TCEEEEECTTTTTTS----CCC---TTT-TTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCCSC
T ss_pred HHHHHHHHHc-CCEEEEECCccccCc----Ccc---ccc-cCccEEEecCccccc-CCCceEEEEECHHHHHhhcCCCCC
Confidence 8999999999 999999999985322 112 221 246699999999874 3345799999998876653310
Q ss_pred ----------------hhccCCCChHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHHHHHhccCCCCeecCC---C
Q 012124 328 ----------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSEP---Q 386 (470)
Q Consensus 328 ----------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~ 386 (470)
....++++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+.+..+ .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~ 296 (366)
T 1m32_A 221 LSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE---LAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELH 296 (366)
T ss_dssp STTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGB
T ss_pred ccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchhc
Confidence 011246777877777777764 2344 6788899999999999999988 8876654 3
Q ss_pred ceEEEeeeccC--ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFST--YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 387 ~g~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
+++++|+++++ .. +..++.+.|.++ ||.+.||..| .++++|++++. +++++++++++|+++++
T Consensus 297 ~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~-gi~v~~~~~~-~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 297 SPIITAFYSPEDPQY-----------RFSEFYRRLKEQ-GFVIYPGKVS-QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CSSEEEEECCCCTTC-----------CHHHHHHHHHHT-TEECEECCCS-SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred CceEEEEEcCccCCC-----------CHHHHHHHHHHC-CEEEECCcCC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 67779999874 22 678899988876 9999999876 46899999996 78999999999999876
Q ss_pred hh
Q 012124 463 TL 464 (470)
Q Consensus 463 ~~ 464 (470)
++
T Consensus 364 ~~ 365 (366)
T 1m32_A 364 WT 365 (366)
T ss_dssp TC
T ss_pred hc
Confidence 54
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=289.28 Aligned_cols=337 Identities=17% Similarity=0.145 Sum_probs=250.3
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--------cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--------AGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--------~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
.+++.+.|..+.+. ++|+.+.+++.+.+.. ...|+.+ .+..+..+.+.+.+.+.+| +++++|++|+|+
T Consensus 19 ~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg 94 (423)
T 3lvm_A 19 AMKLPIYLDYSATT-PVDPRVAEKMMQFMTM-DGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG--ADPREIVFTSGA 94 (423)
T ss_dssp -CCSSEECBTTTCC-CCCHHHHHHHTTSSST-TSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT--CCGGGEEEESSH
T ss_pred ccCCCEeecCCCcC-CCCHHHHHHHHHHHhh-cccccCCCccccchhHHHHHHHHHHHHHHHHHcC--CCCCeEEEeCCh
Confidence 45677888887776 5688888888887651 0112111 1122333444444444445 467899999999
Q ss_pred HHHHHHHHHHhcC----CCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCC
Q 012124 164 KQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 236 (470)
Q Consensus 164 ~~al~~~~~~l~~----~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p 236 (470)
++++.++++++.+ +||+|++++|+|+++...+ ...|++++.++++. ++.+|++.|++++++++++|++++|
T Consensus 95 t~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~ 172 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHV 172 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSB
T ss_pred HHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCCCcEEEEEeCC
Confidence 9999999998874 8999999999999988776 44599999999875 4568999999999999999999999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+||||.+++ +++|+++|++| |++||+||+|+.... ... ... .+..+++.||||.+|.+| +||++++
T Consensus 173 ~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~~~----~~~---~~~-~~~di~~~s~sK~~g~~g--~G~~~~~ 238 (423)
T 3lvm_A 173 NNEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVGKL----PID---LSQ-LKVDLMSFSGHKIYGPKG--IGALYVR 238 (423)
T ss_dssp CTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTTTTS----CCC---TTT-SCCSEEEEESTTTTSCSS--CEEEEEC
T ss_pred CCCCccccC---HHHHHHHHHHc-CCEEEEEhhhhcCCC----CcC---hhh-cCCCEEEechHHhcCCCC--eEEEEEe
Confidence 999999999 78899999999 999999999875211 111 222 345699999999887555 8999998
Q ss_pred HHHHHHHHHHhh-------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc--
Q 012124 317 KHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-- 387 (470)
Q Consensus 317 ~~~~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-- 387 (470)
++.++.+..... ....+.+...+.++..++.. ..+++++++++++++++.+.+.|++++|+.+..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 315 (423)
T 3lvm_A 239 RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHG 315 (423)
T ss_dssp BTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTB
T ss_pred ccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 776655443321 22345567777777677664 245588899999999999999999998988876553
Q ss_pred -eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--
Q 012124 388 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA-- 445 (470)
Q Consensus 388 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~-- 445 (470)
+.++++.++.. +..++.+.|.+ |.+.+|..|.. ++++|++++.
T Consensus 316 ~~~~~~~~~~~~------------~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~ 380 (423)
T 3lvm_A 316 APNILNVSFNYV------------EGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 380 (423)
T ss_dssp CTTEEEEEETTS------------CHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTC
T ss_pred CCCeEEEEeCCC------------CHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCC
Confidence 22345555432 67788877643 89999877644 3789999995
Q ss_pred CHHHHHHHHHHHHHHHHhhCC
Q 012124 446 SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++++++++++|++++++++.
T Consensus 381 t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 381 TEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999987654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=282.53 Aligned_cols=323 Identities=13% Similarity=0.091 Sum_probs=247.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC-------
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP------- 177 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~------- 177 (470)
..++++.+.+++.+.+......+....+..++++.+++++.+.+|. ++++|++|+|+++++..++.++..+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~ 116 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNN--KDAYGHIVSGGTEANLMALRCIKNIWREKRRK 116 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTC--TTCEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCC--CCCCEEEecCcHHHHHHHHHHHHHHHHhhhhh
Confidence 3345678888988887654444433336678888888888887774 6789999999999999999998776
Q ss_pred ------CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHH
Q 012124 178 ------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 178 ------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
||+|++++|+|+++...++..|++++.+|++. ++.+|++.|++++++ +++++++++|+||||.+.+ ++
T Consensus 117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~ 191 (397)
T 3f9t_A 117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IE 191 (397)
T ss_dssp TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HH
T ss_pred cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HH
Confidence 99999999999999999999999999999864 456899999999987 8999999999999999998 88
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCc-cc------ccccCCCCCceEEEeccCcccccccceeeEEEcCHH-HHHH
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATH-TS------FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAA 322 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~------~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~~~~ 322 (470)
+|.++|++| |++||+||+|+.+.++.... .. ...+. . +..+++.|++|.++ +|.|+||++++++ +.+.
T Consensus 192 ~i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~ 267 (397)
T 3f9t_A 192 ELSKIAKEN-NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRY 267 (397)
T ss_dssp HHHHHHHHH-TCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGG
T ss_pred HHHHHHHHh-CCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEEEEeCHHHHHh
Confidence 899999999 99999999998765432111 00 11111 1 45688999999885 7889999987654 4433
Q ss_pred HHHHhhhcc-----------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEE
Q 012124 323 CNKIQSQFT-----------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391 (470)
Q Consensus 323 l~~~~~~~~-----------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~ 391 (470)
+........ .+.+.+.+.++...+. ...+++..++++++++++.+.|+++ |+.+..+..+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 341 (397)
T 3f9t_A 268 LDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIV 341 (397)
T ss_dssp TCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEE
T ss_pred hccCCccccCCCccccccccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEE
Confidence 322111111 1124456666666554 4567778888889999999999988 8875544445556
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHH
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~ 462 (470)
|+.++ +..++.+.|.++ ||.+.+|.. ++++|++++. +++++++++++|+++++
T Consensus 342 ~~~~~--------------~~~~~~~~l~~~-gi~v~~~~~---~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 342 AIEDE--------------DYKEVCKKLRDR-GIYVSVCNC---VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EEECT--------------THHHHHHHHHHT-TCBCEECSS---SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEEeC--------------CHHHHHHHHHhC-CeEEeccCC---CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 77765 456788888776 999999763 5899999995 89999999999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=279.37 Aligned_cols=323 Identities=14% Similarity=0.116 Sum_probs=240.3
Q ss_pred CChHHHHHHHHHHHHcCCC----CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc----CCC
Q 012124 107 DTPVLIAEAGINAIREGFT----RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----SPG 178 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~----~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~----~~g 178 (470)
++|+.+.+++.+.+.+... .|....+..++.+.+.+++.+.+|. ++++|++|+|+++++.++++++. ++|
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~i~~~~g~~~a~~~~~~~~~~~~~~~g 88 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNG--GGGTVVFTSGATEANNLAIIGYAMRNARKG 88 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--TTEEEEEESSHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCC--CcCeEEEECCchHHHHHHHHHhhhhhcCCC
Confidence 4578899999998865211 1211123345555666666665664 67899999999999999999987 999
Q ss_pred CeEEEcCCCCCChHHHHHH---cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 179 DEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 179 d~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
|+|++++|+|+++...+.. .|++++.++++. ++.+|++.|++++++++++|++++|+||||.+++ +++|.++
T Consensus 89 d~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l 163 (382)
T 4hvk_A 89 KHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQP---VEEISEV 163 (382)
T ss_dssp CEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCC---HHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCceEEEEECCCCCceeeCC---HHHHHHH
Confidence 9999999999998776544 699999999874 3468999999999999999999999999999999 7789999
Q ss_pred HHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH-------hh
Q 012124 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QS 328 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~ 328 (470)
|++| |+ ||+|++|+... ....+.. .+..+++.|+||.+|.+| +|+++++++. .+... ..
T Consensus 164 ~~~~-~~-li~D~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~~~~~~~~~~~~ 229 (382)
T 4hvk_A 164 LAGK-AA-LHIDATASVGQ----IEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEA--KLQPVILGGGQENG 229 (382)
T ss_dssp HSSS-SE-EEEECTTTBTT----BCCCHHH----HTCSEEEEESGGGTSCTT--CEEEEEETTC--CCCCSSCSSCTGGG
T ss_pred HHHc-CE-EEEEhHHhcCC----CCCCchh----cCCCEEEEeHHHhcCCCc--eEEEEEcCcc--CcCcccccCCCcCc
Confidence 9999 99 99999987421 1111111 245699999999887555 6777765543 11111 11
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc---eEEEeeeccCccCCcccC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~ 405 (470)
......+...+.++..++.. ..++++++++.++++++++.+.|++++|+.+..+.+ +.++++.++..
T Consensus 230 ~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 299 (382)
T 4hvk_A 230 LRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI------- 299 (382)
T ss_dssp TSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------
T ss_pred cccCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------
Confidence 12334566777777777664 256788999999999999999999988888776543 23466666643
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++.+.|.++ ||.+.+|..|.. ++++|++++. +++++++++++|+++++++
T Consensus 300 -----~~~~~~~~l~~~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 300 -----EGESIVLSLDMA-GIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp -----CHHHHHHHHHHT-TCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHC-CEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 678888888665 999999987653 4789999995 8899999999999999876
Q ss_pred CC
Q 012124 465 RP 466 (470)
Q Consensus 465 ~~ 466 (470)
+.
T Consensus 374 ~~ 375 (382)
T 4hvk_A 374 RS 375 (382)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=275.40 Aligned_cols=333 Identities=16% Similarity=0.090 Sum_probs=241.8
Q ss_pred HhcCC-CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 90 AQAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 90 ~~~~~-~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
...|. ++||++.+.++.++++.+++++. .|. +...+.+.+++++.+.+|.+ +++++++++|+++++.
T Consensus 23 ~~~g~~~v~~~~~~~~~~~~~~~v~~a~~--------~~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~~ 90 (374)
T 2aeu_A 23 NEKGRDALYDLSGLSGGFLIDEKDKALLN--------TYI---GSSYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAIL 90 (374)
T ss_dssp HHTCGGGCEECSSCCCCCCCCHHHHHHHT--------STT---HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHH
T ss_pred hccCccceeeecccCCCCCCCHHHHHHHH--------Hhc---CchHHHHHHHHHHHHHhCCC-CcceEEEEcChHHHHH
Confidence 45677 78999999988888999988875 222 12456677887777777753 4578999999999999
Q ss_pred HHHHHhcCCCCeEEEcCCCCCChHH---HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceE-EEEcCCCCCcccCC
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSPSNPTGSVY 244 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-i~l~~p~nPtG~~~ 244 (470)
.++.++ +||+|++++|+|+++.. .++..|++++.+ .|++.++++ ++++++ |++++||||||.
T Consensus 91 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~nptG~-- 156 (374)
T 2aeu_A 91 ATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTMDLKVI-- 156 (374)
T ss_dssp HHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCTTSCBC--
T ss_pred HHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCCCCCCC--
Confidence 999988 99999999999987654 677889999887 278999988 778999 889999999997
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+..++++|.++|++| |++||+||+|+.+..+.....+...+ +.+++++||||.+ +|+|+||+++++++++.+.
T Consensus 157 ~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~----~~di~~~S~sK~l--~g~~~G~~~~~~~~~~~l~ 229 (374)
T 2aeu_A 157 ELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELVDKIY 229 (374)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHH
T ss_pred CcccHHHHHHHHHHc-CCEEEEECCcccccccccccCCcccc----CCcEEEecCcccc--cCcceEEEEECHHHHHHHH
Confidence 778899999999999 99999999998764100001111112 3458999999986 5689999999999999998
Q ss_pred HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH----HHHHHHHhccC---CCCeec-CCCceEEEeeecc
Q 012124 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER----RDFLVKSFGEL---EGVKMS-EPQGAFYLFIDFS 396 (470)
Q Consensus 325 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~---~g~~~~-~~~~g~~~~~~~~ 396 (470)
.....+..+++++.|.++..+++... .+.+++..+..+.. ++.+.+.|..+ +|+.+. .+.+.++.|.+++
T Consensus 230 ~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~ 307 (374)
T 2aeu_A 230 IEGTKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKD 307 (374)
T ss_dssp HHHHTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESS
T ss_pred HhhccccCCCCHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccc
Confidence 87766666788999999988887621 21222222222222 46666666654 356654 4555555565443
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEEeec-C--HHHHHHHHHHHHHHHHhhC
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRISYAA-S--LTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-~~~~iRls~~~-~--~~~i~~~l~~l~~~l~~~~ 465 (470)
.... ..+..+++..+++++||.+.||..|. .++++||+++. + +.+++..++.|+++++++.
T Consensus 308 ~~~~--------~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 308 DTIN--------IKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp HHHH--------HHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred cccc--------ccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 2100 00123366667766799999998774 35699999985 2 2347888888888887764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=278.78 Aligned_cols=332 Identities=14% Similarity=0.067 Sum_probs=250.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+++|+.+.+. .+++.+.+++.+.+. .|.+..|..++++.+++++.+.+| +++++|++|+|+++++..+++.+
T Consensus 14 ~~i~l~~~~~~-~~~~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~ 86 (359)
T 1svv_A 14 KPYSFVNDYSV-GMHPKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLA 86 (359)
T ss_dssp -CEECSCSCSS-CCCHHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHH
T ss_pred eeEEecCCCcC-CCCHHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHH
Confidence 46999997766 678889999988764 476777889999999999999888 46789999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHH--HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC-------ceEEEEcCCCCCcccCCC
Q 012124 175 CSPGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKLTEK-------SRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-------~~~i~l~~p~nPtG~~~s 245 (470)
.++||+|++++|+|+++.. .++..|++++.+|.+ ++.+|++.|++.++++ +++|++++| ||||.+++
T Consensus 87 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~ 162 (359)
T 1svv_A 87 LRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYT 162 (359)
T ss_dssp CCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCC
T ss_pred hCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecC
Confidence 9999999999999998887 478899999999974 4669999999999655 889999988 79999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~ 325 (470)
.+++++|+++|++| |++||+||+|..+.++..+ .....+.-.....+++.|++|..+ + ..+|++++++++++.+..
T Consensus 163 ~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~g~-~-~~~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 163 KQELEDISASCKEH-GLYLFLDGARLASALSSPV-NDLTLADIARLTDMFYIGATKAGG-M-FGEALIILNDALKPNARH 238 (359)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEECTTHHHHHTSTT-CCCCHHHHHHHCSEEEEECTTTTC-S-SCEEEEECSGGGCTTHHH
T ss_pred HHHHHHHHHHHHHh-CCEEEEEccchhhhhcCCC-cchhhhhhhhcCCEEEEecccCCC-C-CceEEEEEcccHHHHHHH
Confidence 99999999999999 9999999999654332111 111100000123378889999743 3 568999999988877765
Q ss_pred Hhhhcc--CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcc
Q 012124 326 IQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 403 (470)
Q Consensus 326 ~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 403 (470)
...... ...+.....++..++. +...++++++++++++++.+.| +.+|+++..+.+++++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------- 305 (359)
T 1svv_A 239 LIKQRGALMAKGWLLGIQFEVLMK-----DNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------- 305 (359)
T ss_dssp HHHHTTCCCTTTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-------
T ss_pred HHhcCCcccccchhhHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-------
Confidence 432111 1222222233334444 2345778889999999999999 566888887888888998764
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++|++++||.+.+. ....++++|++++. +++++++++++|+++++++
T Consensus 306 ---------~~~~~~l~~~~gi~v~~~-~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ---------NTMIAELNNDFDMYTVEP-LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ---------HHHHHHHTTTEECEEEEE-ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ---------HHHHHHHHHhcCEEEEec-ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 367788876658988321 11234689998774 8999999999999887653
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=281.62 Aligned_cols=318 Identities=15% Similarity=0.144 Sum_probs=242.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEc
Q 012124 106 FDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 184 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~ 184 (470)
.++|+.+++++.+.+.. +.|. ...+..++|+++++++ |.+.++++|++|+|+++++.++++++++ |+|+++
T Consensus 9 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~ 80 (353)
T 2yrr_A 9 TPIPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVL 80 (353)
T ss_dssp CCCCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEE
T ss_pred CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEE
Confidence 34578888887766532 2221 1234566677666664 6544578999999999999999998876 899999
Q ss_pred CCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 APFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
+|+|+++ ...++..|++++.++++. ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|++| |
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~ 154 (353)
T 2yrr_A 81 VNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEA-G 154 (353)
T ss_dssp ECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH-T
T ss_pred cCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHc-C
Confidence 9999875 455678999999999864 345899999999987 8999999999999999999 77899999999 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHH-------------HH-
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACN-------------KI- 326 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~-------------~~- 326 (470)
++||+|++|+... ...++..+ +..+++.|++|.+ +.+| +||+++++++++.+. ..
T Consensus 155 ~~li~D~a~~~~~----~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 224 (353)
T 2yrr_A 155 ALFFLDAVTTLGM----LPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHW 224 (353)
T ss_dssp CEEEEECTTTTTT----SCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHH
T ss_pred CeEEEEcCccccc----cccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhh
Confidence 9999999996321 11222222 3358899999966 4345 799999999887654 10
Q ss_pred -hhhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeecCCC--ceEEEeeeccCccCCc
Q 012124 327 -QSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYGSE 402 (470)
Q Consensus 327 -~~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g~~~~~~~~~~~~~~ 402 (470)
......+.+...+.++.++++. ..+. +++++++++++++++.+.|+++ |+++..+. +++++|+++|...
T Consensus 225 ~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--- 297 (353)
T 2yrr_A 225 ERGGYHHTTPVLLHYALLEALDL---VLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV--- 297 (353)
T ss_dssp TTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC---
T ss_pred hcCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC---
Confidence 1223345677777777777764 1333 7788999999999999999988 88877654 5666788887432
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHH-HHHHHHHHHHHh
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQ-AAVERIKKGLLT 463 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~-~~l~~l~~~l~~ 463 (470)
+..++.+.|.++ ||.+.+|..|..++++|++++. ++++++ +++++|+++++.
T Consensus 298 --------~~~~~~~~l~~~-gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 298 --------DADRLVRALYAE-GVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp --------CHHHHHHHHHHT-TEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred --------CHHHHHHHHHHC-CEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 678899988776 9999999877778899999953 778888 999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=280.51 Aligned_cols=326 Identities=17% Similarity=0.166 Sum_probs=243.7
Q ss_pred cCCCeEEccCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.+.+... .++.+.+++.+.+.+....+ ..+..+.++.+++++.+..| ++++++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~g----~~~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS--RAFHSDQLGPWYEKVAKLTN----KEMVLPMNTGAEAVE 107 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSEETTHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHHhcC----CCEEEEeCcHHHHHH
Confidence 4567899998865544 47899999999886532221 11223344444444444444 579999999999999
Q ss_pred HHHHHhcCC----------CCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVCSP----------GDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++.+..+ +|.|+++.|+|+++...+...+.. +..++. .|++.|+++++
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 180 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCC
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhc
Confidence 999987644 689999999999887666554332 444443 28999999999
Q ss_pred CCceEEEEcCCCCCcccCCCHHH-HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~-~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+++++|++++|+||||.+++.++ +++|+++|++| |++||+||+|.++.+.+... ...... .... +.||||.++
T Consensus 181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~~-~~~d---~~~~SK~l~ 254 (392)
T 3ruy_A 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE-NVLFVADEIQTGLGRTGKVF-ACDWDN-VTPD---MYILGKALG 254 (392)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTTTTSSSS-GGGGGT-CCCS---EEEECGGGG
T ss_pred cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCccccch-hhhccC-CCCC---EEEEchhhh
Confidence 89999999999999999996555 99999999999 99999999998876554321 111111 1122 347899986
Q ss_pred ccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCCe
Q 012124 305 MTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVK 381 (470)
Q Consensus 305 ~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g~~ 381 (470)
+| +|+||+++++++++.+.......+++.+++.+.++.++++. .+. ++.++.++++++++.+.|+++ +.+.
T Consensus 255 -gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (392)
T 3ruy_A 255 -GGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV----LEE-EKLTERSLQLGEKLVGQLKEIDNPMIT 328 (392)
T ss_dssp -TTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH----HHH-TTHHHHHHHHHHHHHHHHTTCCCTTEE
T ss_pred -CChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH----HHh-hhHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 67 99999999999988877666666788999999999999875 222 677888899999999999886 3345
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
...+.+++ +++.++. +..++.+.|.+ +||.+.||. ++++|++++. +++++++++++|++
T Consensus 329 ~~~~~g~~-~~~~~~~-------------~~~~l~~~l~~-~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 329 EVRGKGLF-IGIELNE-------------PARPYCEQLKA-AGLLCKETH----ENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp EEEEETTE-EEEEESS-------------CSHHHHHHHHT-TTEECCCBT----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEeeeeE-EEEEEcc-------------hHHHHHHHHHH-CCcEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55555555 5556753 45688888875 599999875 5799999654 89999999999998
Q ss_pred HH
Q 012124 460 GL 461 (470)
Q Consensus 460 ~l 461 (470)
++
T Consensus 390 ~l 391 (392)
T 3ruy_A 390 VL 391 (392)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=283.08 Aligned_cols=329 Identities=14% Similarity=0.125 Sum_probs=244.7
Q ss_pred cCCCeEEccCC---CCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG---EPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g---~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.+ .+.-..++.+.+++.+++..... +. .....++++.+++.+.+.+| .++|++|+|+++++.
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~ 111 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH-CS-NLFWNRPQMELAELLSKNTF----GGKVFFANTGTEANE 111 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CC-TTSEEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhccc-Cc-cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 35567999887 33222578899999998876322 11 11223566666666666555 479999999999999
Q ss_pred HHHHHhcC------C-CCeEEEcCCCCCChHH-HHHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 169 QAVLAVCS------P-GDEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 169 ~~~~~l~~------~-gd~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
.+++++.. + ++.|++.+|+|++... .++..|.+ ++.++. .|++.|++++++++
T Consensus 112 ~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~~ 184 (397)
T 2ord_A 112 AAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSEDV 184 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTTE
T ss_pred HHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcCe
Confidence 99998763 5 4789999999977554 77778876 667765 28999999998899
Q ss_pred eEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 229 RLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 229 ~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++|++++|+||||. +++.+++++|+++|++| |++||+||+|.++.+.+. ..++..+... .. +.||||.++ +|
T Consensus 185 ~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~-~~~~~~~~~~-~d---~~s~sK~~~-~G 257 (397)
T 2ord_A 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEY-DALLVFDEVQCGMGRTGK-LFAYQKYGVV-PD---VLTTAKGLG-GG 257 (397)
T ss_dssp EEEEECSEECTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSHHHHHTCC-CS---EEEECGGGG-TT
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCcc-chhhhhhCCC-CC---eeeeccccC-CC
Confidence 99999999999999 99999999999999999 999999999998765543 2222223211 12 238899998 99
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCeec
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMS 383 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~ 383 (470)
+|+||++++++++ .+.......+++.+++.|.++.++|+.. .+ +++++.++++++++.+.|+++ +.+...
T Consensus 258 ~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 258 VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL---TK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH---TS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 9999999998876 5543333456678999999999888752 11 356677788888888887664 222222
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGL 461 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l 461 (470)
.+ .|.++|+++++.. +..++++.|.+ +||.+.||. ++++|++++ .+++++++++++|++++
T Consensus 332 ~~-~g~~~~~~~~~~~-----------~~~~l~~~l~~-~gi~v~~~~----~~~iRis~~~~~~~e~i~~~~~~l~~~l 394 (397)
T 2ord_A 332 RG-MGLMIGIQFREEV-----------SNREVATKCFE-NKLLVVPAG----NNTIRFLPPLTVEYGEIDLAVETLKKVL 394 (397)
T ss_dssp EE-ETTEEEEEECTTS-----------CHHHHHHHHHH-TTEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EE-EeEEEEEEECChH-----------HHHHHHHHHHH-CCCEEccCC----CCEEEEECCcCCCHHHHHHHHHHHHHHH
Confidence 23 3556788887532 57889998887 599999973 578999966 49999999999999988
Q ss_pred Hh
Q 012124 462 LT 463 (470)
Q Consensus 462 ~~ 463 (470)
++
T Consensus 395 ~~ 396 (397)
T 2ord_A 395 QG 396 (397)
T ss_dssp HT
T ss_pred hh
Confidence 64
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=274.00 Aligned_cols=324 Identities=19% Similarity=0.233 Sum_probs=235.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+|+|+.+.+.+ +++.+++++.+... ....|++..+..+||+++++++. . +++++++|+++++.+++.++
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g----~----~~~~~~~~gt~a~~~~~~~~ 73 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETFG----K----EAALFVPSGTMGNQVSIMAH 73 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCCC-CCcccCCChHHHHHHHHHHHHhC----C----ceEEEecCcHHHHHHHHHHh
Confidence 569999999876 55778877765432 23457778889999999999873 2 46788888889999999999
Q ss_pred cCCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCc-ccCC
Q 012124 175 CSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT-GSVY 244 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPt-G~~~ 244 (470)
++|||+|++++|+|.... ..++..|++++.+ .+ .++.+|++.|++++++ ++++|++++||||| |.++
T Consensus 74 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~ 150 (347)
T 1jg8_A 74 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV 150 (347)
T ss_dssp CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence 999999999999986533 3577789999988 43 2345899999999975 68999999999999 9999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEecccccc--ccCCCCcccccccCCCCCceEEEeccCcccccccceee-EEEcCHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHI--IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~--~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~~~~ 321 (470)
+.+++++|+++|++| |++||+|++|... .+.+.. ...+....+ .++.||||.++.+ +| |+++++++++
T Consensus 151 ~~~~l~~i~~~a~~~-~~~li~D~a~~~~~~~~~~~~---~~~~~~~~d--~~~~s~sK~l~~~---~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 151 PLENIKEICTIAKEH-GINVHIDGARIFNASIASGVP---VKEYAGYAD--SVMFCLSKGLCAP---VGSVVVGDRDFIE 221 (347)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCCC---HHHHHHTCS--EEEEESSSTTCCS---SCEEEEECHHHHH
T ss_pred cHHHHHHHHHHHHHC-CCEEEeehhhhhcchhhcCCC---hHHhccccc--EEEEecccccCCC---ceEEEEcCHHHHH
Confidence 999999999999999 9999999987531 122211 111111123 3345899999732 67 5678998998
Q ss_pred HHHHHhhhccCCC--ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeeccC-
Q 012124 322 ACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFST- 397 (470)
Q Consensus 322 ~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~- 397 (470)
.+...+.....+. +.+.+.++...++.. .+.++ +. .++++.+.+.|+++ |+.+. .+..+.++|++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~---~~-~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 1jg8_A 222 RARKARKMLGGGMRQAGVLAAAGIIALTKM---VDRLK---ED-HENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL 293 (347)
T ss_dssp HHHHHHHHHTCCCSSTHHHHHHHHHHHHHS---STTHH---HH-HHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHHH---HHHHH---HH-HHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc
Confidence 8877655444333 445555555566541 12222 22 24567778888777 66642 23344558999874
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.. +..+++++|.++ ||.+.++. .+++|+++.. +++++++++++|+++++++
T Consensus 294 ~~-----------~~~~~~~~l~~~-gi~v~~~~----~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 294 KV-----------NAHGFIEALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp SS-----------CHHHHHHHHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cC-----------CHHHHHHHHHHC-CCEEecCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 21 678899988765 99998853 4689999864 8999999999999998764
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=278.76 Aligned_cols=325 Identities=14% Similarity=0.117 Sum_probs=249.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 106 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
..+++.+.+++.+.+ ...| .....++.+.+.+++.+.+|.+ ..+.+++|+|+++++..++.+++++||+|++++
T Consensus 22 ~~~~~~v~~a~~~~~---~~~~--~~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~ 95 (411)
T 3nnk_A 22 INADPRVLRAMSSQL---IGQY--DPAMTHYMNEVMALYRGVFRTE-NRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPV 95 (411)
T ss_dssp CCCCHHHHHHHTSCC---CCTT--CHHHHHHHHHHHHHHHHHHTCC-CSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHhhccc---cccc--cHHHHHHHHHHHHHHHHHhCCC-CCcEEEECCCcHHHHHHHHHHhcCCCCEEEEec
Confidence 345777777766432 1222 2233455566666666666753 223488899999999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++. ++.+|++.|++++++ ++++|++++|+||||.+++ +++|.++|++| |+
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 169 (411)
T 3nnk_A 96 FGRFGHLLCEIARRCRAEVHTIEVPW--GEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRY-DA 169 (411)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TC
T ss_pred CCchHHHHHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHc-CC
Confidence 99987 8888999999999999853 456899999999976 8999999999999999999 78899999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh---------------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~--------------- 327 (470)
+||+|++++... .... +.. .+..+++.|++|.++ .+.++||+++++++++.+....
T Consensus 170 ~li~Dea~~~~~----~~~~---~~~-~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~ 240 (411)
T 3nnk_A 170 LFYTDATASLGG----NPLE---TDV-WGLDAVSAGMQKCLG-GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGD 240 (411)
T ss_dssp EEEEECTTTBTT----BCCC---TTT-TTCSEEECCSTTTTC-CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCS
T ss_pred EEEEECCcccCC----cccc---hhc-cCCcEEEecCccccC-CCCceEEEEECHHHHHHHhhccccccccccccccccc
Confidence 999999986421 1111 221 346699999999864 4456999999999998887543
Q ss_pred ---------------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 328 ---------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 328 ---------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
.....+.+...+.++..+++. ..++ +++++++++++++++.+.|+++ |+++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 316 (411)
T 3nnk_A 241 EEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGD 316 (411)
T ss_dssp SCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred CCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCC
Confidence 112234577777777777764 2344 7889999999999999999987 8877655
Q ss_pred Cc---eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHH
Q 012124 386 QG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKK 459 (470)
Q Consensus 386 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~ 459 (470)
.+ +.++|+.+|+.. +..++.+.|++++||.+.+|.....++++|+++ +. +++++++++++|++
T Consensus 317 ~~~~~~~~~~~~~~~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 317 LKHKMNNVLGVVIPQGI-----------NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp GGGBCSSEEEEECCTTC-----------CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred cccccccEEEEECCCCC-----------CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 43 567888887543 788899988877799999986544568999998 43 78999999999999
Q ss_pred HHHhhCC
Q 012124 460 GLLTLRP 466 (470)
Q Consensus 460 ~l~~~~~ 466 (470)
+++++..
T Consensus 386 ~l~~~~~ 392 (411)
T 3nnk_A 386 VLNYLKF 392 (411)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9987754
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=275.36 Aligned_cols=323 Identities=13% Similarity=0.134 Sum_probs=246.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE-EecChHHHHHHHHHHhcCCCCeEEEcC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL-VSNGAKQSILQAVLAVCSPGDEVIIPA 185 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~-it~g~~~al~~~~~~l~~~gd~Vlv~~ 185 (470)
..++.+.+++.+. ....|. ....++.+.+.+++.+.+|. ++++++ +++|+++++..++.+++++||+|++++
T Consensus 21 ~~~~~v~~a~~~~---~~~~~~--~~~~~~~~~l~~~la~~~g~--~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~ 93 (416)
T 3isl_A 21 EVDPRVLRVMSTP---VVGQFD--PAFTGIMNETMEMLRELFQT--KNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPI 93 (416)
T ss_dssp CCCHHHHHHTTSC---CCCTTS--HHHHHHHHHHHHHHHHHTTC--CCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CcCHHHHHHhccc---CCCCcc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEec
Confidence 4466666655441 122232 23345566666666666674 456665 889999999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|++ +...++..|++++.++++.+ +.+|++.|+++++ +++++|++++|+||||..++ +++|.++|++| |+
T Consensus 94 ~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~ 167 (416)
T 3isl_A 94 YGRFGYLLTEIAERYGANVHMLECEWG--TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTE-DA 167 (416)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHT-TC
T ss_pred CCcccHHHHHHHHhcCCeeEEEecCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHc-CC
Confidence 99987 66788899999999998754 3589999999997 58999999999999999999 88899999999 99
Q ss_pred EEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh---------------
Q 012124 263 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ--------------- 327 (470)
Q Consensus 263 ~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~--------------- 327 (470)
+||+|++|+.... ... +.. .+..+++.|++|.++ .+.++||+++++++++.+...+
T Consensus 168 ~li~D~a~~~~~~----~~~---~~~-~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~ 238 (416)
T 3isl_A 168 LFIVDAVATIGGC----EVK---VDE-WKIDAAIGGTQKCLS-VPSGMAPITYNERVADVIAARKKVERGIATQADRAAL 238 (416)
T ss_dssp EEEEECTTTTTTS----CCC---TTT-TTCSEEECCSSSTTC-CCSSEEEEEECHHHHHHHHTC----------------
T ss_pred EEEEECCccccCC----Ccc---hhh-cCCCEEEecCccccC-CCCCeEEEEECHHHHHHhhccccccccccccccchhc
Confidence 9999999874211 111 111 345699999999763 4556899999999988876321
Q ss_pred -----------------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 328 -----------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 328 -----------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.....+.+...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++.
T Consensus 239 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (416)
T 3isl_A 239 SGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAM-GLRLF 314 (416)
T ss_dssp --CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred cCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEec
Confidence 112334577777777777764 2445 7889999999999999999986 88877
Q ss_pred CCCc---eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH-HHHHHHHHHH
Q 012124 384 EPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL-TTLQAAVERI 457 (470)
Q Consensus 384 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~-~~i~~~l~~l 457 (470)
.+.+ +.++++.+|+.. +..++.+.|.+++||.+.+|.....++++|++++. ++ +++++++++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l 383 (416)
T 3isl_A 315 GDDSCKMPVVTCVEIPGGI-----------DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGL 383 (416)
T ss_dssp SCGGGBCTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cCccccCCcEEEEeCCCCC-----------CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHH
Confidence 6654 566888887542 78899999887779999998765567899999943 44 4499999999
Q ss_pred HHHHHhhCC
Q 012124 458 KKGLLTLRP 466 (470)
Q Consensus 458 ~~~l~~~~~ 466 (470)
+++++++..
T Consensus 384 ~~~~~~~~~ 392 (416)
T 3isl_A 384 EAVLLRHNA 392 (416)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999987653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=281.85 Aligned_cols=359 Identities=12% Similarity=0.080 Sum_probs=237.8
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.| ...+.. ++.+++++.+++.+. ..|.+..+..++++++++++.+..+ .+.++|++|+|+++++.
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~ 103 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL-PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATE 103 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHH
Confidence 35668999987 334444 889999999988763 3454556777889999999988776 46679999999999999
Q ss_pred HHHHHhc--------CCCCeEEEcCCCCCChHHHHHHcCCE---------------EEEecCcCC-CCCccCHHhHhhhc
Q 012124 169 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADAT---------------PVILPTRIS-ENFLLDPKVLESKL 224 (470)
Q Consensus 169 ~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~~~-~~~~~d~~~l~~~l 224 (470)
.+++.+. .++|.|++.+|+|+++...+...+.. +..++.+.. .....|++.|++++
T Consensus 104 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 183 (430)
T 3i4j_A 104 SAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALL 183 (430)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHH
Confidence 9999876 34789999999999987655444332 222332110 00123568888888
Q ss_pred c----CCceEEEEcCCCC-Cccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 225 T----EKSRLLILCSPSN-PTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 225 ~----~~~~~i~l~~p~n-PtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
+ +++++|+++.++| ++|. .++.+++++|.++|++| |++||+||+|.+|.+.+. ...+..+++.... +.+
T Consensus 184 ~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~~~~g~-~~~~~~~~~~~~d---i~t 258 (430)
T 3i4j_A 184 EREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA-GIIFIADEVMSGMGRCGS-PLALSRWSGVTPD---IAV 258 (430)
T ss_dssp HHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSGGGGTTTCCCS---EEE
T ss_pred HhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccc-hhhhhhhcCCCCc---EEE
Confidence 6 3445555555577 8887 77888999999999999 999999999998765543 1222222011112 447
Q ss_pred cCccccccc-ceeeEEEcCHHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTG-WRLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 299 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
|||.++ +| +|+||+++++++++.+... ....+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.
T Consensus 259 ~sK~l~-~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~ 336 (430)
T 3i4j_A 259 LGKGLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQAL 336 (430)
T ss_dssp ECGGGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-CCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999998 79 9999999999999998874 3445678899999999998874221 345566666666666666666
Q ss_pred hccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC---CCCcEEEEee--cCHH
Q 012124 374 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG---DDTCIRISYA--ASLT 448 (470)
Q Consensus 374 L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~---~~~~iRls~~--~~~~ 448 (470)
+.+++++....+.+. |+|+.+++...... ........++++.|+++ ||.+.|+..+. .++++|++++ .+++
T Consensus 337 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e 412 (430)
T 3i4j_A 337 QARFPQMMQVRGTGL-LLGVVLGDLATGQA--FETPGIASRIGAAALKR-GLITYPGSGAEPNGRGDHLLLGPPLSITAA 412 (430)
T ss_dssp HHHCTTEEEEEEETT-EEEEEEC--------------CHHHHHHHHHHT-TEECC-----------CEEEECCCTTCCHH
T ss_pred HHhCCCeEEEEEEEE-EEEEEeccccccCC--CccHHHHHHHHHHHHhC-CCEEEecccccCCCCCCEEEEECCCCCCHH
Confidence 656666666555544 57777753200000 00001246788888765 99999984322 2568999988 3999
Q ss_pred HHHHHHHHHHHHHHhh
Q 012124 449 TLQAAVERIKKGLLTL 464 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~ 464 (470)
++++++++|+++++++
T Consensus 413 ~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 413 EVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999865
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=284.86 Aligned_cols=359 Identities=12% Similarity=0.136 Sum_probs=247.4
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC--CC-------CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DF-------DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 140 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~--~~-------~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~i 140 (470)
++..+.++...........+...|.++++++.|.+ |+ ..++.+++++. .....|.+..+..+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~~~~y~~~~~~~~l~~~l 84 (456)
T 2ez2_A 9 RIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MGDEAYAGSENFYHLERTV 84 (456)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TCCCCSSSCHHHHHHHHHH
T ss_pred eeeeecccCCCCHHHHHHHHHHCCCCcccCCcccceeeeccccCCccCCHHHHHHhh----cchhhcccChhHHHHHHHH
Confidence 34455555443344444455556666666666654 33 23455555544 4455788888999999999
Q ss_pred HHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCC-CChHHHHHHcCCEEEEecCcCC----C----
Q 012124 141 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTRIS----E---- 211 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~----~---- 211 (470)
++++. .+++++|+|+++++.+++++++++|| ++++|+| ..+...++..|++++.++++.+ +
T Consensus 85 a~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~ 154 (456)
T 2ez2_A 85 QELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAF 154 (456)
T ss_dssp HHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSC
T ss_pred HHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccc
Confidence 99973 24899999999999999999999999 7889999 6668889999999999998732 2
Q ss_pred CCccCHHhHhhhccCCc----eEEEEcCCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc----------cccC
Q 012124 212 NFLLDPKVLESKLTEKS----RLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH----------IIYA 276 (470)
Q Consensus 212 ~~~~d~~~l~~~l~~~~----~~i~l~~p~n-PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~----------~~~~ 276 (470)
++.+|++.|++++++++ ++|++++|+| |||.+++.+++++|+++|++| |++||+||+|.. +.+.
T Consensus 155 ~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~-~i~li~De~~~~g~~~~~~~~~~~~~ 233 (456)
T 2ez2_A 155 KGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH-GIKVFYDATRCVENAYFIKEQEQGFE 233 (456)
T ss_dssp TTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHHSTTCT
T ss_pred cCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHc-CCeEEEEccccccccccccccccccC
Confidence 36789999999997554 8888999998 999999999999999999999 999999999986 3454
Q ss_pred CCCccccc-ccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhc-----cCCCChHHHHH-HHHHHhc
Q 012124 277 PATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF-----TSGASSISQKA-GVAALGL 348 (470)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~-----~~~~~~~~q~a-~~~~l~~ 348 (470)
+....++. .+.. ...++++ |++|..+ +| +.||+++ ++++++.+....... ..+.+.....+ +...++.
T Consensus 234 g~~~~~~~~~~~~-~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~ 309 (456)
T 2ez2_A 234 NKSIAEIVHEMFS-YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREA 309 (456)
T ss_dssp TSCHHHHHHHHHT-TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHH
T ss_pred Ccchhhhhhhhcc-cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHH
Confidence 32111110 1111 1234444 7888765 67 7899998 788988887655431 11223333222 3333321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC---ccCCcccCCCCCCCHHHH-----HHHHH
Q 012124 349 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST---YYGSEAEGFGKIENSESL-----CRYLL 420 (470)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l-----~~~L~ 420 (470)
.+ +...++.++..+.+.+.|++. |+.+..|.+++++|++++. .. +..++ ++.|+
T Consensus 310 ---~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~L~ 371 (456)
T 2ez2_A 310 ---MQ---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCEHL-----------TQDEFPAQSLAASIY 371 (456)
T ss_dssp ---TC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTTTS-----------CGGGCHHHHHHHHHH
T ss_pred ---hH---HHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcCCC-----------ChhhccHHHHHHHHH
Confidence 11 233333445556777777775 7877778888989988742 11 23333 77775
Q ss_pred HcCCEEEEC-CCCC------------CCCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012124 421 DKAQVALVP-GDAF------------GDDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 421 ~~~gI~v~p-g~~f------------~~~~~iRls~~---~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++||.+.+ |..| ...+++||+++ .+++++++++++|++++++..
T Consensus 372 ~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 372 VETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 556998766 4322 11378999998 589999999999999987653
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=275.72 Aligned_cols=327 Identities=16% Similarity=0.147 Sum_probs=247.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEc
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 184 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~ 184 (470)
+..+++.+.+++.+.. ...|. .+..++.+.+.+++.+.+|.+ .+++|++|+|+++++..++++++++||+|+++
T Consensus 31 p~~~~~~v~~a~~~~~---~~~~~--~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~ 104 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRM---IGHMQ--KEMLQIMEEIKQGIQYVFQTR-NPLTLVVSGSGHCAMETALFNLLEPGDSFLTG 104 (393)
T ss_dssp CCCCCHHHHHHTTCCC---CCTTS--HHHHHHHHHHHHHHHHHHTCC-CSEEEEESCCTTTHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCHHHHHHhcccc---cCccc--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 3445777777776532 11221 222344555555555555643 33469999999999999999999999999999
Q ss_pred CCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC
Q 012124 185 APFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 261 (470)
Q Consensus 185 ~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~ 261 (470)
.++|++. ...++..|++++.++++.+ +.+|++.|++++++ ++++|++++||||||.+++ +++|.++|++| |
T Consensus 105 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~ 178 (393)
T 3kgw_A 105 TNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHRY-Q 178 (393)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-T
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHHc-C
Confidence 9887533 5678889999999998644 35899999999987 8999999999999999999 88899999999 9
Q ss_pred EEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh-------------
Q 012124 262 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------- 328 (470)
Q Consensus 262 ~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------------- 328 (470)
++||+|++|+... .... ... .+..+++.|+||.++ ++.++||+++++++++.+.....
T Consensus 179 ~~li~De~~~~g~----~~~~---~~~-~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
T 3kgw_A 179 CLLLVDSVASLGG----VPIY---MDQ-QGIDIMYSSSQKVLN-APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLA 249 (393)
T ss_dssp CEEEEECTTTTTT----SCCC---TTT-TTCCEEEEESSSTTC-CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred CEEEEECCccccC----cccc---hhh-cCCCEEEecCccccc-CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHH
Confidence 9999999987421 1111 121 345688999999874 44559999999999988765321
Q ss_pred ----------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEeee
Q 012124 329 ----------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFID 394 (470)
Q Consensus 329 ----------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~~ 394 (470)
....+.+...+.++..+++.. .+.++++++++++++++.+.+.|+++ |+++..+. .++++|+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 326 (393)
T 3kgw_A 250 KLWGCEGETRVIHHTTPVTSLYCLRESLALI--AEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVT 326 (393)
T ss_dssp HHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEE
T ss_pred HhhhhccccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEe
Confidence 112345777777776776631 13347888999999999999999988 88776433 35667888
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+++.. +..++.+.|++++||.+.+|..+..++++|+++ +. +++++++++++|++++++++.
T Consensus 327 ~~~~~-----------~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 327 VPAGY-----------NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp CCTTB-----------CHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred CCCCC-----------CHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 87543 788999998877799999998766778999998 53 899999999999999988764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=275.16 Aligned_cols=335 Identities=13% Similarity=0.131 Sum_probs=247.3
Q ss_pred cCCCeEEccCCC---CCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE---PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~---~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.|. +--..++.+.+++.+++.+....+ .....+.++.+++++.+.+| .++|++|+|+++++.
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~~a~~ 110 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--NGYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--CCcCCHHHHHHHHHHHhhCC----CCeEEEeCcHHHHHH
Confidence 456789999883 322247889999999886532211 11112445555555555554 359999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
.+++.+.. +| |.|++.+|+|+++...+...+. ++..+|. .|++.|+++++++
T Consensus 111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 183 (406)
T 4adb_A 111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC
Confidence 99998865 66 9999999999998765554443 4444443 3899999999989
Q ss_pred ceEEEEcCCCCCcccCC--CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 228 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~--s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
+++|+++ |+||||.++ +.+++++|+++|++| |++||+||+|.++.+.+... .+..... ...++ ||||.++
T Consensus 184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~~~-~~d~~---t~sK~~~- 255 (406)
T 4adb_A 184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRH-NALLIFDEVQTGVGRTGELY-AYMHYGV-TPDLL---TTAKALG- 255 (406)
T ss_dssp EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CCSEE---EECGGGG-
T ss_pred eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhH-HHHhcCC-CCCEE---Eechhhc-
Confidence 9998888 999999988 999999999999999 99999999999876654322 2112221 12333 7899998
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CCee
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKM 382 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~ 382 (470)
+|+|+||+++++++++.+.......+++.+++.|.++.++++... . ++.++.++++++++.+.|+++. ....
T Consensus 256 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 330 (406)
T 4adb_A 256 GGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN---T--PEMLNGVKQRHDWFVERLNTINHRYGLFS 330 (406)
T ss_dssp TTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 999999999999999888776666778899999999999887522 1 4666777777777777776641 1111
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~ 460 (470)
..+..|+++|+.+++.. ..+..++++.|.++ ||.+.|+. ++++|++++ .+++++++++++|+++
T Consensus 331 ~~~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~-gi~v~~~~----~~~iRi~~~~~~~~e~i~~~~~~l~~~ 396 (406)
T 4adb_A 331 EVRGLGLLIGCVLNADY---------AGQAKQISQEAAKA-GVMVLIAG----GNVVRFAPALNVSEEEVTTGLDRFAAA 396 (406)
T ss_dssp EEEEETTEEEEEECTTT---------TTCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEeCCc---------HHHHHHHHHHHHHC-CcEEeecC----CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 12234667888887531 01478899988876 99999864 679999655 4999999999999999
Q ss_pred HHhhCC
Q 012124 461 LLTLRP 466 (470)
Q Consensus 461 l~~~~~ 466 (470)
+++++.
T Consensus 397 l~~~~~ 402 (406)
T 4adb_A 397 CEHFVS 402 (406)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 987754
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=272.38 Aligned_cols=329 Identities=11% Similarity=0.068 Sum_probs=237.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++|||+.+.+. .+++.+++++.+........|++ .++++.+++++.+.+| .+++|++|+|+++++.+++.+
T Consensus 7 ~~~id~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~----~~~~~~l~~~la~~~g---~~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 7 PPALGFSSDNIA-GASPEVAQALVKHSSGQAGPYGT----DELTAQVKRKFCEIFE---RDVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCBCSCGGGC-CCCHHHHHHHHHTTSSCCCSTTC----SHHHHHHHHHHHHHHT---SCCEEEEESCHHHHHHHHHHT
T ss_pred CceEeeccCCcc-CCCHHHHHHHHhhccCccccccc----chHHHHHHHHHHHHhC---CCCcEEEeCCccHHHHHHHHH
Confidence 467899988654 46788888888875321334533 4555555555555566 245699999999999999999
Q ss_pred hcCCCCeEEEcCCCCCChHHH--HHHc--CCEEEEecCcCCCCCccCHHhHhh-hccC-------CceEEEEcCCCCCcc
Q 012124 174 VCSPGDEVIIPAPFWVSYPEM--ARIA--DATPVILPTRISENFLLDPKVLES-KLTE-------KSRLLILCSPSNPTG 241 (470)
Q Consensus 174 l~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~~~l~~-~l~~-------~~~~i~l~~p~nPtG 241 (470)
+.++||+|++++|+|...... +... |++++.+|.+ ++.+|++.|++ ++++ ++++|++++||| ||
T Consensus 79 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG 154 (356)
T 1v72_A 79 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VG 154 (356)
T ss_dssp SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS
T ss_pred hcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC
Confidence 999999999999998776555 6666 9999999874 25699999999 8875 688999988987 99
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccccccc--CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~ 319 (470)
.++|.+++++|+++|++| |++||+|++|..+.. .+.. +....+.. +..+++.|+||. +. ....||+++++++
T Consensus 155 ~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~-~~~~~~~~--~~d~~~~s~sK~-g~-~~G~g~~~~~~~~ 228 (356)
T 1v72_A 155 SIYTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLGCS-PAEMTWKA--GVDALSFGATKN-GV-LAAEAIVLFNTSL 228 (356)
T ss_dssp CCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCC-TTTTTGGG--TCCEEEECCGGG-TC-SSCEEEEESSGGG
T ss_pred ccCCHHHHHHHHHHHHHc-CCeEEEEchhhHhHhccCCCC-HHHhhhhh--cCCEEEEecccC-CC-cCccEEEEECHHH
Confidence 999999999999999999 999999999976421 1211 11111111 112445689998 42 2223488889999
Q ss_pred HHHHHHHhhhccC-CC-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC
Q 012124 320 VAACNKIQSQFTS-GA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~-~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~ 397 (470)
++.+......... .. +...+..+...++. ....+..++++++++++.+.|++++|+++..|.+++++|++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~- 302 (356)
T 1v72_A 229 ATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD-----DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD- 302 (356)
T ss_dssp HHHHHHHHHHTTCCCSSTHHHHHHHHHHTST-----THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-
T ss_pred HhhHHHHhhccCchhhhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC-
Confidence 8887765433221 12 22333333444432 2334456777888999999999888998877777888998874
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++|.++ ||.+.||. |+ ++++|++++. +++++++++++|++++++.
T Consensus 303 ---------------~~~~~~l~~~-gi~v~~g~-~~-~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 ---------------SAMIDALLKA-GFGFYHDR-WG-PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp ---------------HHHHHHHHHT-TCBCBCSS-SS-TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred ---------------HHHHHHHHhc-CeEEeccc-cC-CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 2677777655 99999987 65 7899999874 8999999999999887654
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=277.97 Aligned_cols=334 Identities=13% Similarity=0.128 Sum_probs=238.6
Q ss_pred cCCCeEEccCCCCC--CCC--hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~--~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|++.|.+. +.. ++.+++++.+++.... .|++..+..+++..+++.+.+.+|.+. +++|++|+|+++++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~ 117 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAI 117 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHH
Confidence 45678999998843 333 7999999999986532 343334445677777777777777543 78999999999999
Q ss_pred HHHHHHhcC-CCCeEEEcCCCCCChHHHHH-HcC-------------CEEEEecCcCCC--CCc------------cCHH
Q 012124 168 LQAVLAVCS-PGDEVIIPAPFWVSYPEMAR-IAD-------------ATPVILPTRISE--NFL------------LDPK 218 (470)
Q Consensus 168 ~~~~~~l~~-~gd~Vlv~~p~y~~~~~~~~-~~g-------------~~~~~v~~~~~~--~~~------------~d~~ 218 (470)
..+++.+.. +||+|++.+|+|+++..... ..| .+++.+|.+.+. +|+ +|++
T Consensus 118 ~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 197 (419)
T 2eo5_A 118 EASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIE 197 (419)
T ss_dssp HHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHH
Confidence 999987654 49999999999987654332 221 356777764211 112 4688
Q ss_pred hHh-hhcc-----CCceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 219 VLE-SKLT-----EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 219 ~l~-~~l~-----~~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
.|+ ++++ +++++ ++++| +||||. ..+.+++++|.++|++| |++||+||+|.+|.+.+.. ..+.... ..
T Consensus 198 ~l~~~~i~~~~~~~~~~~-vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~~~g~~g~~-~~~~~~~-~~ 273 (419)
T 2eo5_A 198 FIEDYIFVNLVPPEEVAG-IFFEPIQGEGGYVIPPKNFFAELQKLAKKY-GILLVDDEVQMGLGRTGKL-FAIENFN-TV 273 (419)
T ss_dssp HHHHTHHHHTCCGGGEEE-EEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGT-CC
T ss_pred HHHHHHHhhccCCCCEEE-EEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCcch-hhHHhcC-CC
Confidence 999 8886 34444 44566 568996 67899999999999999 9999999999987654421 1111111 11
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
.+ +.||||.++ +| +|+||++++++++ .+ ......+++.+++.|.++.++|+. .+ +.++.+++++++
T Consensus 274 ~d---~~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~---~~----~~~~~~~~~~~~ 340 (419)
T 2eo5_A 274 PD---VITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDI---VK----DLLPHVNEIGKI 340 (419)
T ss_dssp CS---EEEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
T ss_pred CC---EEEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
Confidence 22 338999998 69 9999999999887 66 323345677899999999999874 12 277888999999
Q ss_pred HHHHhccCCCCeecCCCceEEEeeecc-CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cC
Q 012124 370 LVKSFGELEGVKMSEPQGAFYLFIDFS-TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--AS 446 (470)
Q Consensus 370 l~~~L~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~ 446 (470)
+.+.|+++ +....+. |.++|++++ ... ... +++.|++ +||.+.|+. ++++|++++ .+
T Consensus 341 l~~~L~~~--~~~~~~~-g~~~~i~~~~~~~-----------~~~-~~~~l~~-~Gv~v~~~~----~~~lRis~~~~~t 400 (419)
T 2eo5_A 341 FAEELQGL--ADDVRGI-GLAWGLEYNEKKV-----------RDR-IIGESFK-RGLLLLPAG----RSAIRVIPPLVIS 400 (419)
T ss_dssp HHHHHTTS--SSEEEEE-TTEEEEECSCHHH-----------HHH-HHHHHHH-TTEECEEET----TTEEEECCCTTCC
T ss_pred HHHHHHHh--hhheEee-eEEEEEEEecCcc-----------HHH-HHHHHHH-CCCEEecCC----CCEEEEECCCCCC
Confidence 99999876 3333333 555778883 210 345 8888875 499999964 578999876 39
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012124 447 LTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~ 464 (470)
++++++++++|+++++++
T Consensus 401 ~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 401 EEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=278.72 Aligned_cols=336 Identities=13% Similarity=0.096 Sum_probs=250.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCc---CcHH--HHHHHH-HHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNA---GTLE--LRSAIC-HKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-~~~~y~~~~---g~~~--lr~~ia-~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.++|+|+.|.+.+ ++.+.+++.+.+.+ ....|+... |.+. +++.++ +++.+.+|. ++++|++++|+. +
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~--~~~~i~~~sGt~-a 97 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA--AWANVQPHSGSQ-A 97 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHH-H
T ss_pred hcceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC--CcceEEecchHH-H
Confidence 4679999999876 88899999888764 345564332 5554 455433 466666674 455677777765 9
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChH---HHHHHcCC--EEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCc
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADA--TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 240 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPt 240 (470)
+..++++++++||+|++++|+|+.+. ..++..|. ..+++++++ +++.+|++.|++++++ ++++|++++|+||
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~- 175 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEHRPKVIVAGASAYP- 175 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhcCCeEEEEeccccC-
Confidence 99999999999999999999999883 44555565 455555442 3567999999999974 8999999999998
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 318 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~ 318 (470)
...+ +++|.++|++| |++||+||+|+. +.+.+... .. +. ..+++++||||.+ +|.|+||++++ ++
T Consensus 176 -~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~-~~--~~---~~di~~~s~sK~l--~g~~~G~~~~~~~~ 242 (407)
T 2dkj_A 176 -RFWD---FKAFREIADEV-GAYLVVDMAHFAGLVAAGLHP-NP--LP---YAHVVTSTTHKTL--RGPRGGLILSNDPE 242 (407)
T ss_dssp -SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTCSC-CC--TT---TCSEEEEESSGGG--CCCSCEEEEESCHH
T ss_pred -CCCC---HHHHHHHHHHc-CCEEEEEccccccccccCccC-Cc--cc---cccEEEEeccccC--CCCCceEEEECCHH
Confidence 5566 88999999999 999999999997 55443211 11 11 2568999999965 68899999999 89
Q ss_pred HHHHHHHHhhhccCCCChHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeecc
Q 012124 319 FVAACNKIQSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~-a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~ 396 (470)
+++.+......+..+++...+. ++.++++.. ...++++++++++++++++.+.|+++ |+++.. +..++++|++++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 319 (407)
T 2dkj_A 243 LGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLR 319 (407)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECc
Confidence 9998887765554444444444 555666531 13678889999999999999999988 888765 356777899987
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC------CCCCcEEEEee------cCHHHHHHHHHHHHHHHHh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF------GDDTCIRISYA------ASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f------~~~~~iRls~~------~~~~~i~~~l~~l~~~l~~ 463 (470)
..- .+..++.+.|.+ +||.+.+|..| +.++++|++++ .+++++++++++|++++++
T Consensus 320 ~~~----------~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 320 PKG----------LTGKEAEERLDA-VGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp GGT----------CCHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ccC----------CCHHHHHHHHHH-cCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 420 156788887754 59999998754 23578999996 5889999999999999876
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=269.01 Aligned_cols=324 Identities=13% Similarity=0.122 Sum_probs=244.2
Q ss_pred EccCCCCCCCChHHHHHHHHHHHHcCCCCCCC-CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 98 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 98 ~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~-~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
+|+.|.|++++|+.+++++.+.+..+ .|++ ..+..+||+++++++. .++|++|+|+++++.+++.++.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ--WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT--CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC--CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC-
Confidence 68999999999999999999988764 4866 6889999999999973 2589999999999999999985
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~ 256 (470)
+||+|++++|+|+++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||...+ +++|+++|
T Consensus 89 ~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~---l~~i~~la 161 (424)
T 2po3_A 89 LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCA---ADQLRKVA 161 (424)
T ss_dssp CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHH
T ss_pred CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCC---HHHHHHHH
Confidence 899999999999999999999999999999975 356799999999998889988875 48999876 88999999
Q ss_pred HhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhccCC-
Q 012124 257 AKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG- 333 (470)
Q Consensus 257 ~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~- 333 (470)
+++ |++||+|++|+ ++.+++. ++..+. + +++.||||..+++|.|+||++++ +++++.+.........+
T Consensus 162 ~~~-~~~li~Dea~~~g~~~~~~---~~~~~~---d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~ 232 (424)
T 2po3_A 162 DEH-GLRLYFDAAHALGCAVDGR---PAGSLG---D--AEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLP 232 (424)
T ss_dssp HHT-TCEEEEECTTCTTCEETTE---ETTSSS---S--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCT
T ss_pred HHc-CCEEEEECccccCCeECCe---eccccc---C--EEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccc
Confidence 999 99999999999 4655432 222221 2 89999995555566899999999 88998887765432111
Q ss_pred --------CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCce---EEE-eeeccC---
Q 012124 334 --------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FYL-FIDFST--- 397 (470)
Q Consensus 334 --------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g---~~~-~~~~~~--- 397 (470)
...+.+.++...+.. .+.+++..++.++.++++.+.|++++|+.+.. +.++ +++ ++.+++
T Consensus 233 ~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 308 (424)
T 2po3_A 233 GGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATT 308 (424)
T ss_dssp TCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHH
T ss_pred ccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccc
Confidence 001123333333332 34566677777888888999999888888765 4433 233 366663
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------------CCCc-------EEEEeec--CHHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------------DDTC-------IRISYAA--SLTTLQAAV 454 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------------~~~~-------iRls~~~--~~~~i~~~l 454 (470)
.. +..++.+.|.+ .||.+.+...-. .++. ||+++.. +++++++++
T Consensus 309 ~~-----------~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~ 376 (424)
T 2po3_A 309 GI-----------HRDLVMEVLKA-EGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVA 376 (424)
T ss_dssp SS-----------CHHHHHHHHHH-TTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHH
T ss_pred hh-----------hHHHHHHHHHH-CCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHH
Confidence 21 67788887765 599998732100 0122 6666444 899999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
+.|++++++.
T Consensus 377 ~~L~~~~~~~ 386 (424)
T 2po3_A 377 DLLRLCATRG 386 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999887653
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=272.49 Aligned_cols=334 Identities=13% Similarity=0.088 Sum_probs=245.4
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+. .++.+.+++.+++.+..+.| ..+..++++.+++++.+..| +++|++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIE 107 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 456789999984 3344 37899999999887643333 23445777777777777665 579999999999999
Q ss_pred HHHHHhc-------CCCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 169 QAVLAVC-------SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 169 ~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
.+++.+. .++|.|++.+|+|+++.......+ .++..++. .|++.|++++++++
T Consensus 108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~ 180 (395)
T 3nx3_A 108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNEKT 180 (395)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccCCe
Confidence 9998775 457999999999998765444332 34555553 28999999999888
Q ss_pred eEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 229 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++|++..++|++|.. ++.+++++|.++|++| |+++|+||+|.+|...+.. ...... +....+.||||.++ .|
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~----~~~~d~~t~sK~~~-~G 253 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEK-DILLIADEIQCGMGRSGKF-FAYEHA----QILPDIMTSAKALG-CG 253 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG----TCCCSEEEECGGGT-TT
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCCcCCcc-hhHHhc----CCCCCEEEeccccc-CC
Confidence 888887777777765 7899999999999999 9999999999986544321 111111 22223568999998 69
Q ss_pred ceeeEEEcCHHH-HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 308 WRLGYIAGPKHF-VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 308 ~r~G~~~~~~~~-~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
+|+||+++++++ ++.+.......+++.+++.+.++.++++.... +++.++.++..+..++.+.+.+.+++.+....+
T Consensus 254 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 331 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLDELINEFDFCKKRKG- 331 (395)
T ss_dssp SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-
T ss_pred CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-
Confidence 999999999998 77776554456778899999999988874211 344555555555556666665555554444333
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.|.++|+.+++.. +..++++.|+++ ||.+.|+. ++++|++++. +++++++++++|++++++
T Consensus 332 ~g~~~~~~~~~~~-----------~~~~~~~~l~~~-Gi~v~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 332 LGFMQGLSLDKSV-----------KVAKVIQKCQEN-ALLLISCG----ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp ETTEEEEEECTTS-----------CHHHHHHHHHHT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEeCCcc-----------hHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 3556888887531 577888888766 99999874 6799998665 999999999999999874
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=273.51 Aligned_cols=333 Identities=12% Similarity=0.129 Sum_probs=243.8
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+. .++.+.+++.+++.+.. .+ ...+..++++.+++.+.+..| .++|++|+|++++++
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~-~~-~~~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~ 128 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLW-HT-SNVFTNEPALRLGRKLIDATF----AERVLFMNSGTEANE 128 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC-CC-CTTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcc-cc-cCccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHH
Confidence 466789998883 2222 47889999999986532 22 112345677778888777665 479999999999999
Q ss_pred HHHHHhcC-------CC-CeEEEcCCCCCChHH-HHHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCC
Q 012124 169 QAVLAVCS-------PG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 169 ~~~~~l~~-------~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
.+++.+.. +| ++|++.+|+|+++.. .+...|.+ +..+|. .|++.|+++++++
T Consensus 129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~ 201 (420)
T 2pb2_A 129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH 201 (420)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT
T ss_pred HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC
Confidence 99998865 77 599999999988754 44455553 455553 3899999999889
Q ss_pred ceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 228 SRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++|++++++|++|. +++.+++++|.++|++| |++||+||+|.++.+.+... .+..+.- ...++ ||||.++ +
T Consensus 202 ~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~-gi~lI~Dev~~g~~~~g~~~-~~~~~~~-~~dii---t~sK~l~-~ 274 (420)
T 2pb2_A 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH-QALLVFDEVQCGMGRTGDLF-AYMHYGV-TPDIL---TSAKALG-G 274 (420)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CCSEE---EECGGGG-T
T ss_pred ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc-CCEEEEEcCCcCcccCCcHH-HHHhcCC-CCCeE---Eeccccc-C
Confidence 999998888898884 69999999999999999 99999999998876544321 1111111 12232 7899998 9
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCee
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 382 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 382 (470)
|+|+||+++++++++.+.......+++.+++.|.++.++|+... + ++..+.++++++++.+.|+++ +.+..
T Consensus 275 G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (420)
T 2pb2_A 275 GFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN---T--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSD 349 (420)
T ss_dssp TSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 99999999999888776554444567789999999988887521 1 355666777777777777654 33333
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~ 460 (470)
..+. |.++|++++.... .+..++.+.|+++ ||.+.|+. ++++|+++. .+++++++++++|+++
T Consensus 350 ~~~~-g~~~~v~~~~~~~---------~~~~~l~~~l~~~-Gi~v~~~~----~~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 350 IRGM-GLLIGAELKPKYK---------GRARDFLYAGAEA-GVMVLNAG----ADVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp EEEE-TTEEEEEECGGGT---------TCHHHHHHHHHHT-TEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEec-ceEEEEEECCCch---------HHHHHHHHHHHHC-CCEEEeCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3333 5557888864310 1467888888875 99999974 578999975 4999999999999999
Q ss_pred HHhh
Q 012124 461 LLTL 464 (470)
Q Consensus 461 l~~~ 464 (470)
++++
T Consensus 415 l~~~ 418 (420)
T 2pb2_A 415 VGKV 418 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=277.78 Aligned_cols=354 Identities=14% Similarity=0.063 Sum_probs=243.5
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-CcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-~~i~it~g~~~al 167 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.+. ..|....|..++++++++++.+.++. .. ++|++|+|+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~ 117 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDAN 117 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHH
Confidence 46678999999873 33 4889999999998764 45655677889999999999887653 34 7999999999999
Q ss_pred HHHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCE-E--------------EEecCcCCCCCcc----CHHhHhhhc--
Q 012124 168 LQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADAT-P--------------VILPTRISENFLL----DPKVLESKL-- 224 (470)
Q Consensus 168 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~--------------~~v~~~~~~~~~~----d~~~l~~~l-- 224 (470)
..+++.+ ..+++.|++.+|+|++........+.. . ..+|.+.. .... |++.|++++
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~ 196 (439)
T 3dxv_A 118 EAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAA 196 (439)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHh
Confidence 9999885 346678999999998776655444322 1 23333211 1111 689999998
Q ss_pred --cCCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 225 --TEKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 225 --~~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
.+++++|+++.++|++|... +.+++++|.++|++| |++||+||+|.+|.+.+.. ..+....- ... +.||||
T Consensus 197 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~g~g~~g~~-~~~~~~~~-~~d---i~s~sK 270 (439)
T 3dxv_A 197 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH-GILVVCDEVKVGLARSGRL-HCFEHEGF-VPD---ILVLGK 270 (439)
T ss_dssp SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTCTTTTSSS-SGGGGTTC-CCS---EEEECG
T ss_pred cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhcCC-CCC---EEEEcc
Confidence 45677787877788888755 566699999999999 9999999999986544321 11111111 122 239999
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
.++ +|+|+||+++++++++.+.......++ .+++.+.++.++++.... +++.++.++..+..++.+.+.+.+++.+.
T Consensus 271 ~~~-~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 347 (439)
T 3dxv_A 271 GLG-GGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIG 347 (439)
T ss_dssp GGG-TTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred hhc-CCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 998 799999999999998877665445566 899999999888874211 23344444444444444444444455444
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
...+. |.++|+.+.+....... ...+..++++.|+++ ||.+.|+..+ ++++|++++. +++++++++++|++
T Consensus 348 ~~~~~-g~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 348 DIRGR-GLACGMELVCDRQSREP---ARAETAKLIYRAYQL-GLVVYYVGMN--GNVLEFTPPLTITETDIHKALDLLDR 420 (439)
T ss_dssp EEEEE-TTEEEEEEEEETTTTEE---CHHHHHHHHHHHHHH-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEE-EEEEEEEEecCccccCC---CHHHHHHHHHHHHHC-CcEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444 55577776211000000 001356788888876 9999998543 4799998764 89999999999999
Q ss_pred HHHhhC
Q 012124 460 GLLTLR 465 (470)
Q Consensus 460 ~l~~~~ 465 (470)
+++++.
T Consensus 421 ~l~~~~ 426 (439)
T 3dxv_A 421 AFSELS 426 (439)
T ss_dssp HHHTGG
T ss_pred HHHHHh
Confidence 998764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=276.30 Aligned_cols=352 Identities=12% Similarity=0.066 Sum_probs=238.8
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.+.+ ++.. ++.+.+++.+++.+... + ...+..+++..+++.+.+.++. ++++|++|+|++++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~la~~~~~--~~~~v~~~~gg~ea~~ 116 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-L-FSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 116 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-C-CTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-c-ccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHHHH
Confidence 4566789987764 3333 78999999998876422 2 2233446777777777776664 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc--------------CCEEEEecCcCCCCC--------ccCHHhHhhhc
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA--------------DATPVILPTRISENF--------LLDPKVLESKL 224 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~--------------g~~~~~v~~~~~~~~--------~~d~~~l~~~l 224 (470)
.+++.+. ..+|.|++.+|+|+++....... |...++++......+ .+|++.|++++
T Consensus 117 ~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l 196 (433)
T 1zod_A 117 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 196 (433)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHH
Confidence 9998653 23589999999999876543322 344443332111112 24689999988
Q ss_pred c----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc
Q 012124 225 T----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299 (470)
Q Consensus 225 ~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 299 (470)
+ +++++|+++..+||||. ..+.+++++|.++|++| |++||+||+|.+|.+.+.. ..+.... ....+.||
T Consensus 197 ~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~g~~g~~-~~~~~~~----~~~di~s~ 270 (433)
T 1zod_A 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTM-FACQRDG----VTPDILTL 270 (433)
T ss_dssp HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHHT----CCCSEEEE
T ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCchH-hHHhhcC----CCCCEEEe
Confidence 6 45555554333689996 67899999999999999 9999999999987544321 1111111 11124589
Q ss_pred CcccccccceeeEEEcCHHHHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-
Q 012124 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 376 (470)
Q Consensus 300 sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 376 (470)
||.++ +|+|+||+++++++++.+...... .+++.+++.|.++.++++.. .+ +...++++++++.+.+.|++
T Consensus 271 sK~~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~l~~l 344 (433)
T 1zod_A 271 SKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV---QR--DGLVARANVMGDRLRRGLLDL 344 (433)
T ss_dssp CHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHH
Confidence 99998 699999999999999888763322 56678999999888888631 11 12344455555555555544
Q ss_pred ---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHH
Q 012124 377 ---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQ 451 (470)
Q Consensus 377 ---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~ 451 (470)
++.+....+. |.|+|+++++....... ...+..++++.|+++ ||.+.||..|+.++++||+++ .++++++
T Consensus 345 ~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~---~~~~~~~~~~~l~~~-Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~ 419 (433)
T 1zod_A 345 MERFDCIGDVRGR-GLLLGVEIVKDRRTKEP---ADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEID 419 (433)
T ss_dssp HHHCTTEEEEEEE-TTEEEEEEEEETTTTEE---CTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHHH
T ss_pred HHhCCCeEEEEEE-EEEEEEEEecCccccCC---ChHHHHHHHHHHHHC-CCeEeccCCCCCCCEEEEECCcCCCHHHHH
Confidence 3434333343 55578888642000000 001367788888765 999999987765689999776 3999999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
+++++|+++++++
T Consensus 420 ~~l~~l~~~l~~~ 432 (433)
T 1zod_A 420 LGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=274.05 Aligned_cols=358 Identities=12% Similarity=0.032 Sum_probs=254.8
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||+.|. ..+.. ++.+++++.+++.+....|....+..+++.++++++.+..+ .+.++|++|+|++++++
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~ 126 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANE 126 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHH
Confidence 467789999883 33333 78999999998876555565556667889999999887654 46689999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcC--C-CCCccC--------
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 216 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-------- 216 (470)
.+++.+.. +++.|++.+|+|+++.......+. .+..++... . ++++.+
T Consensus 127 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 206 (460)
T 3gju_A 127 TNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC 206 (460)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHH
Confidence 99998864 469999999999988765544322 234444321 1 112233
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.|+++++ +++++|++..++|++|. +++.+.+++|.++|++| |+++|+||+|.+|.+.+.. .......
T Consensus 207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~-~~~~~~~---- 280 (460)
T 3gju_A 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY-DVLLVADEVVTGFGRLGTM-FGSDHYG---- 280 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHT----
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccccc-chHhhcC----
Confidence 588888885 45666666666788887 77899999999999999 9999999999987554421 1111111
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
....+.+|||.++ .| +|+||+++++++++.+... ....+++.+++.|.++.++|+.... +++++++++..
T Consensus 281 ~~pdi~t~sK~l~-gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 358 (460)
T 3gju_A 281 IKPDLITIAKGLT-SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-MDLVTNAGETG 358 (460)
T ss_dssp CCCSEEEECGGGT-TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred CCCCeeeeehhhc-CCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 1112457999997 67 8999999999999988642 3345778899999999999874221 45677777777
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCC-CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+..++.+.+.+.+++.+....+.+ .++++.+.+..... .... ......++++.|+++ ||.+.|+. .++++||+
T Consensus 359 ~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~---~~~~iRi~ 432 (460)
T 3gju_A 359 AYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDR-VFFDASQKIGPQVATALAAS-GVIGRAMP---QGDILGFA 432 (460)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTT-BCCCGGGCHHHHHHHHHHHT-TEECEECS---SSCEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCcccc-ccccchHHHHHHHHHHHHHC-CeEEecCC---CCCEEEEE
Confidence 777888888887776555554444 45677775421000 0000 000145778888766 99999975 35799999
Q ss_pred ee--cCHHHHHHHHHHHHHHHHhhC
Q 012124 443 YA--ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 443 ~~--~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+. .+++++++++++|+++++++.
T Consensus 433 ~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 433 PPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55 499999999999999998764
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=268.89 Aligned_cols=322 Identities=17% Similarity=0.232 Sum_probs=242.1
Q ss_pred CCCCCCCC-h---HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-c
Q 012124 101 AGEPDFDT-P---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-C 175 (470)
Q Consensus 101 ~g~~~~~~-~---~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~ 175 (470)
.++|++++ | +.+++++.+.+..+...|.+..+..++|+++++++. . +++|++++| ++++.+++.++ +
T Consensus 4 ~~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~----~---~~~i~~~sG-t~al~~~l~~l~~ 75 (388)
T 1b9h_A 4 RKAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG----A---AHALAVTNG-THALELALQVMGV 75 (388)
T ss_dssp -CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT----C---SEEEEESCH-HHHHHHHHHHTTC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC----C---CeEEEeCCH-HHHHHHHHHHcCC
Confidence 35677776 6 899999999998755567677889999999999973 2 256777776 89999999999 8
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 176 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
++||+|++++|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ |+||||.+.+ +++|.++
T Consensus 76 ~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l 148 (388)
T 1b9h_A 76 GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKI 148 (388)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHH
T ss_pred CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHH
Confidence 99999999999999999999999999999999753 467999999999988888776 9999999988 8899999
Q ss_pred HHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH-H--HHHHHHHhhhc-
Q 012124 256 VAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-F--VAACNKIQSQF- 330 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~-~--~~~l~~~~~~~- 330 (470)
|++| |++||+|++|+. ..+.+. .+..+ .++.+.||||..+++|.|+||++++++ + ++.+.......
T Consensus 149 a~~~-~~~li~D~a~~~g~~~~~~---~~~~~-----~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T 1b9h_A 149 SADT-GVPLLQDAAHAHGARWQGK---RVGEL-----DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGR 219 (388)
T ss_dssp HHHH-TCCBCEECTTCTTCEETTE---EGGGS-----SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTC
T ss_pred HHHc-CCEEEEecchhcCCccCCe---ecccc-----cceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 9999 999999999986 333221 22222 158899999666566779999999876 5 55554433210
Q ss_pred --------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC------CCceEE
Q 012124 331 --------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE------PQGAFY 390 (470)
Q Consensus 331 --------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~------~~~g~~ 390 (470)
+...+.+...+ ++.. .+++++..+.++++++++.+.|++++|+.+.. +.++++
T Consensus 220 ~~~~~~~~~~~~g~~~~~~~~~~a~---~~~~----~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
T 1b9h_A 220 PRDDRRYFHKIAGSNMRLNEFSASV---LRAQ----LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYM 292 (388)
T ss_dssp CTTCSSCCCCSCCCBCBCBHHHHHH---HHHH----HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSE
T ss_pred CccCccceeecccccCCcCHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEE
Confidence 01123332222 2221 34466777888889999999999888887764 355788
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------------------C-------CCcEEE
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------------------D-------DTCIRI 441 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----------------------~-------~~~iRl 441 (470)
+|+.++...+ .+..++.+.|.++ ||.+.++..-. . .+.+||
T Consensus 293 ~~~~~~~~~~---------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 362 (388)
T 1b9h_A 293 AMFRIPGLTE---------ERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWL 362 (388)
T ss_dssp EEEECTTCCH---------HHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEE
T ss_pred EEEEeCCcCc---------ccHHHHHHHHHHC-CCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEe
Confidence 9999975200 0356788888765 99998864310 0 125899
Q ss_pred Eeec---CHHHHHHHHHHHHHHHHh
Q 012124 442 SYAA---SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 442 s~~~---~~~~i~~~l~~l~~~l~~ 463 (470)
++.. ++++++.+++.|++++++
T Consensus 363 ~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 363 HHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp EGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9875 789999999999998864
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=267.93 Aligned_cols=331 Identities=12% Similarity=0.025 Sum_probs=241.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
++|+.| +.++|+.+++++.+.+. ..| ..+..++.+.+.+++.+.+|.+.+.+.+++|+|+++++.++++++++
T Consensus 21 ~~~~pg--p~~~~~~v~~a~~~~~~---~~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~ 93 (376)
T 3f0h_A 21 LNFTVG--PVMSSEEVRAIGAEQVP---YFR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT 93 (376)
T ss_dssp EECSSS--SCCCCHHHHHHHTSCCC---CCS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC
T ss_pred eeecCC--CCCCcHHHHHHhcCCCC---CCC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC
Confidence 444443 23457888877766431 122 23455777888888888788653334556699999999999999999
Q ss_pred CCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~ 254 (470)
+||+|++++|+|++.. ..+...|++++.++.+ .++.+|++.|+++++++++++++++|+||||.+++ +++|.+
T Consensus 94 ~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~ 168 (376)
T 3f0h_A 94 KKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIGE 168 (376)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHHH
T ss_pred CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHhhccCceEEEEecccCCcceecC---HHHHHH
Confidence 9999999999777654 3467789999999986 34669999999999889999999999999999999 889999
Q ss_pred HHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh------
Q 012124 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------ 328 (470)
Q Consensus 255 ~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------ 328 (470)
+|++| |++||+|++++.+... ..+.. .+..+++.|+||.++ .+..+|++++++++++.+.....
T Consensus 169 l~~~~-~~~li~D~~~~~~~~~----~~~~~----~~~d~~~~s~~K~l~-~~~G~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T 3f0h_A 169 FCKKN-NMFFVCDCVSAFLADP----FNMNE----CGADVMITGSQKVLA-CPPGISVIVLAPRGVERVEKSKVRTMYFD 238 (376)
T ss_dssp HHHHT-TCEEEEECTTTTTTSC----CCHHH----HTCSEEEEETTTTTC-CCSSCEEEEECHHHHHHHHTCCCCCSTTC
T ss_pred HHHHc-CCEEEEEcCccccCcc----ccccc----cCccEEEecCccccc-CCCceEEEEECHHHHHHhhcCCCCceeec
Confidence 99999 9999999998863221 11111 234589999999997 33347889999999887764211
Q ss_pred -----------hccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeecc
Q 012124 329 -----------QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 396 (470)
Q Consensus 329 -----------~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~ 396 (470)
.....++...+.++.++++.- .+. .++++++.++++++++.+.|+++ |+.+..+.....++...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~ 315 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEI--KKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHP 315 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEE
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeC
Confidence 112234444445555555431 022 57888999999999999999987 676654433222222123
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
... +..++.+.|.+++||.+.||.....++++|+++.. +++++++++++|++++++
T Consensus 316 ~~~-----------~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 316 TTA-----------NAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SSS-----------CHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCC-----------CHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 221 67889999988779999998543456899999974 899999999999999864
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=279.66 Aligned_cols=332 Identities=15% Similarity=0.098 Sum_probs=227.2
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
++.|.|..+.+. ++|+.+.+++.+.+.+.. ..|....+..++.+.+.+++.+.+| +++++|++|+|+++++.+
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g~t~al~~ 95 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPDELIFTSGATESNNI 95 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGEEEESCHHHHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCCcEEEeCCHHHHHHH
Confidence 345666666655 467888888888875411 1121122334455555566655566 467899999999999999
Q ss_pred HHHHhc----CCCC-eEEEcCCCCCChHHHHHH---cCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcc
Q 012124 170 AVLAVC----SPGD-EVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241 (470)
Q Consensus 170 ~~~~l~----~~gd-~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG 241 (470)
++++++ ++|| +|++++++|+++...+.. .|++++.++++. ++.+|++.|++++++++++|++++|+||||
T Consensus 96 ~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 173 (400)
T 3vax_A 96 ALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLVSLMHVNNETG 173 (400)
T ss_dssp HHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEEEEECCCCCce
Confidence 999987 8999 999999999988765554 699999999864 456899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE-cCHH-H
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKH-F 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~-~ 319 (470)
.+++ +++|.++|+++ |++||+|++|+... ....+.. . ..+++.|+||.+|.+| +|+++ ++++ +
T Consensus 174 ~~~~---l~~i~~la~~~-~~~li~D~a~~~~~----~~~~~~~----~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~ 238 (400)
T 3vax_A 174 VIQP---VAELAQQLRAT-PTYLHVDAAQGYGK----VPGDLTT----P-IDMISISGHKIGAPKG--VGALVTRRREEM 238 (400)
T ss_dssp BBCC---HHHHHHHHTTS-SCEEEEECTTTTTT----SGGGGGS----C-CSEEEEETGGGTSCSS--CEEEEECBCSSS
T ss_pred eeCc---HHHHHHHHHhc-CCEEEEEhhhhcCC----CCcChhh----c-CcEEEEeHHHhCCCCc--eEEEEEecchhc
Confidence 9999 78999999999 99999999998421 1112221 1 4589999999777445 67777 6551 1
Q ss_pred H---HHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc--
Q 012124 320 V---AACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-- 387 (470)
Q Consensus 320 ~---~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-- 387 (470)
. ..+... ......+.+...+.++..+++. ..++++++++.++++++++.+.|+ .+|+.+..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~ 314 (400)
T 3vax_A 239 DDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHV 314 (400)
T ss_dssp TTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSB
T ss_pred cccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccC
Confidence 1 111111 1122344567777767677764 245678899999999999999999 88998876654
Q ss_pred -eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEe-ec-
Q 012124 388 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISY-AA- 445 (470)
Q Consensus 388 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~-~~- 445 (470)
+.++++.++.. +..++.+.|. + ||.+.+|..|.. ++++||++ +.
T Consensus 315 ~~~~~~~~~~~~------------~~~~l~~~L~-~-gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~ 380 (400)
T 3vax_A 315 VPHILNLSFEDV------------DAEAFLVTLK-D-LVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQ 380 (400)
T ss_dssp CTTEEEEECTTC------------CHHHHHHHHH-H-HHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-
T ss_pred CCCEEEEEeCCC------------CHHHHHHHHh-c-CcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCC
Confidence 33466677643 7788988887 4 999999865532 38999999 64
Q ss_pred -CHHHHHHHHHHHHHHHHh
Q 012124 446 -SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 446 -~~~~i~~~l~~l~~~l~~ 463 (470)
+++++++++++|++++++
T Consensus 381 ~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 381 ATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp -------------------
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 789999999999988764
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=278.34 Aligned_cols=356 Identities=15% Similarity=0.098 Sum_probs=249.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||+.|. ..+.. ++.+.+++.+++.+. ..|....+..+++.++++++.+..+.. ..++|++|+|++++++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 139 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVE 139 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHH
Confidence 466789999884 44444 899999999998764 346555677788888888888776632 3579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCcC--CCCCccC--------HHhHhh
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRI--SENFLLD--------PKVLES 222 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~--~~~~~~d--------~~~l~~ 222 (470)
.+++.+.. .++.|++.+++|+++.......+. .+..+|... .+.++.+ ++.|++
T Consensus 140 ~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 219 (453)
T 4ffc_A 140 NAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIET 219 (453)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHH
Confidence 99987643 458999999999988766554322 344455431 1222233 466777
Q ss_pred hccCCceEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 223 KLTEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 223 ~l~~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
.+.++..+++++.|.|++| ...+.+.+++|.++|++| |++||+||+|.+|.+.+.. ...... +....+.|||
T Consensus 220 ~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~a~~~~----~~~pdi~t~s 293 (453)
T 4ffc_A 220 QIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN-GVVFIADEVQTGFARTGAW-FASEHE----GIVPDIVTMA 293 (453)
T ss_dssp HTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHH----TCCCSEEEEC
T ss_pred hcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCccCCCccccc-chhhhc----CCCcchHhhh
Confidence 7765666777778877666 456888999999999999 9999999999987554421 111111 2222356899
Q ss_pred cccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
|.++ .|+|+||+++++++++.+.......+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.+.+++.+
T Consensus 294 K~~~-~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 371 (453)
T 4ffc_A 294 KGIA-GGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDII 371 (453)
T ss_dssp GGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhc-CCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 9998 6999999999999998887666667888999999999998874211 2344555555455555555555556554
Q ss_pred eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 381 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
....+ .|.++|+.+.+...... ......++++.|+++ ||.+.|+..| .+++|++++. +++++++++++|+
T Consensus 372 ~~~~~-~g~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~ 443 (453)
T 4ffc_A 372 GEVRG-RGAMLAIEIVKPGTLEP----DAALTKSIAAEALSQ-GVLILTCGTF--GNVIRLLPPLVIGDDLLDEGITALS 443 (453)
T ss_dssp EEEEE-ETTEEEEEEBCTTSCCB----CHHHHHHHHHHHHHT-TEECCEECTT--SCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEe-eceEEEEEEecCcccCC----CHHHHHHHHHHHHhC-CCEEecCCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44333 35567877743100000 001356778887766 9999997655 3689998764 8999999999999
Q ss_pred HHHHhhC
Q 012124 459 KGLLTLR 465 (470)
Q Consensus 459 ~~l~~~~ 465 (470)
++++++.
T Consensus 444 ~~l~~~~ 450 (453)
T 4ffc_A 444 DIIRAKA 450 (453)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998765
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=262.97 Aligned_cols=327 Identities=13% Similarity=0.093 Sum_probs=247.8
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+.|..| +..+|+.+++++.+.+.+....|. ...+..++.+.+.+++.+.+|.. ++++|++|+|+++++.+++.++
T Consensus 5 ~~~~~p~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l 81 (362)
T 3ffr_A 5 KIYFTPG--PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNC 81 (362)
T ss_dssp CEEECSS--SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHH
T ss_pred ceeccCC--CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhc
Confidence 3555554 223477788888888776553322 23344577778888888777864 5689999999999999999999
Q ss_pred cCCCCeEEEcCCCCCC-hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 CSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
.++ +.+++..+.|.. +...++..|++++.++.+ .++.+|+|.|+ +++++++|++++|+||||.+++ +++|.
T Consensus 82 ~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i~ 153 (362)
T 3ffr_A 82 VEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP---VEDIN 153 (362)
T ss_dssp CSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---HHHHT
T ss_pred cCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---HHHHH
Confidence 988 556666666652 334677889999999985 34569999999 7789999999999999999999 78889
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhh----
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---- 328 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~---- 328 (470)
++|++|||++||+|++|+.+... ..+. +..+++.|+||.++ .+| +|++++++++++.+.....
T Consensus 154 ~la~~~p~~~li~D~a~~~~~~~----~~~~------~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 154 TFRDKNKDALIFVDAVSSLPYPK----FDWT------KIDSVFFSVQKCFGLPAG--LGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp TSGGGSTTSEEEEECTTTTTSSC----CCTT------SCSEEEEETTSTTCCCSC--CEEEEEEHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCEEEEecccccCCcc----cChh------HCcEEEEecccccCCCCc--eEEEEECHHHHHHhhhccccCCC
Confidence 99999867999999998753211 1111 24588999999997 666 6889999999888876543
Q ss_pred -----------------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----Cc
Q 012124 329 -----------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG 387 (470)
Q Consensus 329 -----------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~ 387 (470)
....+++...+.++..+++.- ....+++++++++++++++.+.|+++||+++..+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 299 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRS 299 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBC
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcC
Confidence 113456777777776666531 0223678888999999999999999989887653 23
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
++++|+.+++ +..++.+.|.++ ||.+.+|..+..++++|++++. ++++++++++.|++++
T Consensus 300 ~~~~~~~~~~-------------~~~~~~~~l~~~-gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 300 MTTIVANTTM-------------LPGEINKILEPF-DMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SSEEEEEESS-------------CHHHHHHHHGGG-TEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEecCC-------------CHHHHHHHHHHC-CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5667888864 477899988877 9999998766667899999986 8899999999998764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=273.23 Aligned_cols=329 Identities=14% Similarity=0.117 Sum_probs=237.8
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
.|+.++||+.|. .++. +|+.+.+++.+++..... +.. ....++++.+++.+.+.+| +++++|++|+|+++++.
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~~a~~ 118 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-MPQ-TLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 118 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-CCT-TSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCC-Ccc-ccCCHHHHHHHHHHHHhcC--CCcCEEEEcCcHHHHHH
Confidence 355689999885 3444 688999999998875321 111 1123455555555555555 36789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChH-HHHHHcCCE------------EEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
++++++. .+||.|++.+|+|++.. ..+...|.+ +..++. .|++.|++++++++++|++
T Consensus 119 ~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~~~~~v~~ 191 (395)
T 1vef_A 119 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAVIL 191 (395)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-------CcHHHHHHHhccCEEEEEE
Confidence 9998764 67899999999997654 466667775 223332 4899999999888888877
Q ss_pred cCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccccccceee
Q 012124 234 CSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 234 ~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
+.++||||..+ +.+++++|.++|++| |++||+||+|.++.+.+.... ...... .. +.||||.++ +|+|+|
T Consensus 192 ~~~~~~tG~~~~~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~---~d---~~s~sK~~~-~g~~~G 263 (395)
T 1vef_A 192 EPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIV---PD---ILTLAKALG-GGVPLG 263 (395)
T ss_dssp CSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCC---CS---EEEECGGGG-TTSSCE
T ss_pred eCccCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCCchhHhhhcCCC---CC---EEEEccccc-CCCceE
Confidence 66689999865 688999999999999 999999999997544332111 111221 12 228999998 699999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-CeecCCCceEE
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSEPQGAFY 390 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~g~~ 390 (470)
|+++++++++.+.......+++++++.|.++.++++. ..+ .+..++++++++++.+.|++++. +....+..|++
T Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~ 338 (395)
T 1vef_A 264 VAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRY---LER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLM 338 (395)
T ss_dssp EEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTE
T ss_pred EEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEE
Confidence 9999998877665432344566889999888888874 122 45677788888899999987632 11112334567
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+|++++. +..++++.|.+++||.+.|+. ++++|++++. +++++++++++|++++
T Consensus 339 ~~~~~~~-------------~~~~l~~~l~~~~gi~v~~~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 339 VGLELKE-------------KAAPYIARLEKEHRVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEESS-------------CSHHHHHHHHHHHCEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcC-------------hHHHHHHHHHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8888864 356788888834499999862 5799998864 8999999999999876
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=273.28 Aligned_cols=355 Identities=14% Similarity=0.039 Sum_probs=246.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+.. ++.+++++.+++.+....|....+..++++++++++.+..+ .+.++|++|+|++++++
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~ 125 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVD 125 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 466789999883 44443 78999999999987555565556677889999999988765 46679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcC--C-CCCccC--------
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 216 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-------- 216 (470)
.+++.+.+ +++.|++.+|+|+++.......+. .+..++... . +.+ +|
T Consensus 126 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~ 204 (459)
T 4a6r_A 126 TMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVA 204 (459)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHH
Confidence 99999875 579999999999998765554422 223333211 0 111 34
Q ss_pred HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.|++.++ +++++|++..++|++|. .++.+++++|.++|++| |+++|+||+|.+|.+.+... ......- ..
T Consensus 205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~-~~~~~~~-~p 281 (459)
T 4a6r_A 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY-DVLLVADEVICGFGRTGEWF-GHQHFGF-QP 281 (459)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHTC-CC
T ss_pred HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcccccc-hHhhcCC-CC
Confidence 788888885 34455555444666666 55999999999999999 99999999999875554311 1111111 11
Q ss_pred ceEEEeccCcccccccceeeEEEcCHHHHHHHH---HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRERR 367 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~-~~~~~~~ 367 (470)
. +.+|||.++.+|+|+||+++++++++.+. ......+++.++++|.++.++|+.... ++++++.+ +.....+
T Consensus 282 d---i~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 282 D---LFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp S---EEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHH
T ss_pred C---eeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 1 44789999733399999999999999887 334445678899999999999874221 34455555 5555556
Q ss_pred HHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCC-CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--
Q 012124 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-- 444 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-- 444 (470)
+.+.+.|.+++.+....+.+. ++++++....... ..... .....++++.|+++ ||.+.|+. +++||++.
T Consensus 358 ~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~~~~~ 429 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDVRGVGM-VQAFTLVKNKAKR-ELFPDFGEIGTLCRDIFFRN-NLIMRACG-----DHIVSAPPLV 429 (459)
T ss_dssp HHHHHHHTTCTTEEEEEEETT-EEEEEECSBTTTT-BCCSSTTHHHHHHHHHHHHT-TEECEEET-----TEEEECCCTT
T ss_pred HHHHHHHhcCCCeEEEEEEEE-EEEEEEecCcccc-ccccchHHHHHHHHHHHHHC-CeEEecCC-----CEEEEECCCC
Confidence 666566666655655554444 4666765321000 00000 00156788888776 99999963 79999955
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 012124 445 ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++++++++|+++++++
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998765
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=268.38 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=220.8
Q ss_pred EccCCCCCCCChHHHHHHHHHHHH---c--CCCCCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 98 RLAAGEPDFDTPVLIAEAGINAIR---E--GFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 98 ~l~~g~~~~~~~~~~~~a~~~~~~---~--~~~~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.++.+.|++..++.+.+++.+++. . ....|+ +.....++++.++++ +|. + +.++++++++++..+
T Consensus 24 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g~--~--~~i~~~sG~~a~~~~ 95 (398)
T 2rfv_A 24 TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVL----ERG--E--AGLATASGISAITTT 95 (398)
T ss_dssp TCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHH----HTC--S--EEEEESSHHHHHHHH
T ss_pred CCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHH----hCC--C--cEEEECCHHHHHHHH
Confidence 578899998876555444444443 2 223332 233445555555555 453 2 555555666999999
Q ss_pred HHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCH
Q 012124 171 VLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 171 ~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~ 246 (470)
+++++++||+|++++|+|+++...+ +..|.+++.++.+ |++.+++++++++++|++++|+||||.+++
T Consensus 96 l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~- 167 (398)
T 2rfv_A 96 LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPTLSLVD- 167 (398)
T ss_dssp HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC-
T ss_pred HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCcccC-
Confidence 9999999999999999999988776 7889999999863 899999999989999999999999999998
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-HHH
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACN 324 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~-~l~ 324 (470)
+++|+++|++| |+++|+|++|..+.+.. ++ . .+.++++.|+||.++.+|+|+ ||+++++++++ .+.
T Consensus 168 --l~~i~~l~~~~-~~~li~De~~~~~~~~~----~~-~----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~ 235 (398)
T 2rfv_A 168 --IETVAGIAHQQ-GALLVVDNTFMSPYCQQ----PL-Q----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF 235 (398)
T ss_dssp --HHHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH
T ss_pred --HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-h----hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHH
Confidence 89999999999 99999999999765531 11 1 246799999999998799998 99999999887 666
Q ss_pred HHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH----------HhccCCCCeecCC----CceE
Q 012124 325 KIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK----------SFGELEGVKMSEP----QGAF 389 (470)
Q Consensus 325 ~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----------~L~~~~g~~~~~~----~~g~ 389 (470)
...... +.+.+++.|.++...++. ...++++..+..+...+++.+ .|.++|++.+..+ .+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~ 312 (398)
T 2rfv_A 236 VGLKDITGGCMSPFNAWLTLRGVKT---LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGI 312 (398)
T ss_dssp THHHHTTCCCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred HHHHhCCCCCCCHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceE
Confidence 555555 567889999998888875 244444433333333333322 1222344444433 3555
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----------------------CCCcEEEEeec-
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAA- 445 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----------------------~~~~iRls~~~- 445 (470)
+++++++.. .+...+.+.+. ..||.+.+|..|. .++++|||++.
T Consensus 313 -~~~~~~~~~----------~~~~~l~~~~~-~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~ 380 (398)
T 2rfv_A 313 -ISFEIAGGL----------EAGRRMINSVE-LCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLE 380 (398)
T ss_dssp -EEEEETTHH----------HHHHHHHTTCS-SSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSS
T ss_pred -EEEEEcCCH----------HHHHHHHHhCC-cceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCC
Confidence 555886310 02233333332 2378888886542 15799999997
Q ss_pred -CHHHHHHHHHHHHH
Q 012124 446 -SLTTLQAAVERIKK 459 (470)
Q Consensus 446 -~~~~i~~~l~~l~~ 459 (470)
++++++.+++.|++
T Consensus 381 ~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 381 DPEDIINDLEHAIRK 395 (398)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 55666665555543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=267.49 Aligned_cols=341 Identities=11% Similarity=0.040 Sum_probs=237.7
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.+.+ ++. .++.+.+++.+++.+... +....+..+.+..+++.+.+..+ +++++|++|+|++++++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggtea~~ 117 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 4556899998874 343 478999999999876322 21111122445555555555555 46789999999999999
Q ss_pred HHHHHhc---C----CCCeEEEcCCCCCChHHHHHH-c---------------CCEEEEecCcC-CCCC-ccCHHhHhhh
Q 012124 169 QAVLAVC---S----PGDEVIIPAPFWVSYPEMARI-A---------------DATPVILPTRI-SENF-LLDPKVLESK 223 (470)
Q Consensus 169 ~~~~~l~---~----~gd~Vlv~~p~y~~~~~~~~~-~---------------g~~~~~v~~~~-~~~~-~~d~~~l~~~ 223 (470)
.+++.+. + |||+|++.+|+|+++...... . +...++++... ++.+ .+|++.|+++
T Consensus 118 ~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 197 (429)
T 1s0a_A 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHH
Confidence 9988653 2 699999999999987653322 1 23444333211 1123 4799999999
Q ss_pred cc---CCceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 224 LT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 224 l~---~~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
++ +++++|+++.. |||||. ..+.+++++|.++|++| |+++|+||+|.+|.+.+.. ..+....- ... +.|
T Consensus 198 l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~g~~g~~-~~~~~~~~-~~d---~~t 271 (429)
T 1s0a_A 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKL-FACEHAEI-APD---ILC 271 (429)
T ss_dssp HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEE
T ss_pred HHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCcccchH-HHhhhcCC-CCC---EEE
Confidence 86 45555555444 799995 66788999999999999 9999999999986543321 11111111 122 347
Q ss_pred cCccccccc-ceeeEEEcCHHHHHHHHHHh-----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 299 FSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 299 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
|||.++ +| +|+||+++++++++.+.... ...+++.+++.|.++.++++.. .+ ....++++++++++.+
T Consensus 272 ~sK~l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~ 345 (429)
T 1s0a_A 272 LGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL---ES--GDWQQQVADIEVQLRE 345 (429)
T ss_dssp ECGGGG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH---HT--CHHHHHHHHHHHHHHH
T ss_pred eccccc-CCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHH
Confidence 999998 78 99999999999988876531 2245677999999988888641 11 2345666777888888
Q ss_pred HhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCH
Q 012124 373 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASL 447 (470)
Q Consensus 373 ~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~ 447 (470)
.|+++ +++....+. |.++|+++++.. +..++.+.|+++ ||.+.|+ .+++|++++ .++
T Consensus 346 ~L~~l~~~~~~~~~~~~-g~~~~~~~~~~~-----------~~~~l~~~l~~~-Gi~v~~~-----~~~iRis~~~~~t~ 407 (429)
T 1s0a_A 346 QLAPARDAEMVADVRVL-GAIGVVETTHPV-----------NMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILP 407 (429)
T ss_dssp HHGGGGGCTTEEEEEEE-TTEEEEEESSCB-----------CHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCH
T ss_pred HHHHHhcCCCEEEEEEe-eEEEEEEECCcc-----------cHHHHHHHHHHC-CCEEecc-----CCEEEEECCCCCCH
Confidence 88764 455444444 456888887532 677888888765 9999883 378999966 499
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 012124 448 TTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++|++++++++
T Consensus 408 e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 408 QQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp HHHHHHHHHHHHHTSSGG
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999887654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=271.87 Aligned_cols=326 Identities=12% Similarity=0.073 Sum_probs=238.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC----CCCCCC---CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh-HHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA-KQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y~~---~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~-~~a 166 (470)
.+++++.|.+ ++|+.+++++.+.+... ...|.. ..+..++.+.+.+++.+.+|.+ ++++|++|+|+ +++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~a 79 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHH
Confidence 3577877755 56888999998877531 111211 3455556677777777777864 46799999999 999
Q ss_pred HHHHHHHhcCC---CCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh-hccCCceEEEEcCCCCCccc
Q 012124 167 ILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGS 242 (470)
Q Consensus 167 l~~~~~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~l~~~~~~i~l~~p~nPtG~ 242 (470)
+.+++..++.+ ||.|+++.++|.. ...++..| +++.+++++++++ +|++++++ ++++++++|++++|+||||.
T Consensus 80 l~~~~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~~-~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 80 FTMLPMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANSY-QSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGTS-CSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHHHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEEeecccccCc-CCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 99999998865 5677777776654 33467789 9999998753333 79999999 88889999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
+++ ++ . ++| |++||+|++|+.+.. ..++..+ .++++|+||.+|++| +||+++++++++.
T Consensus 157 ~~~--~i---~---~~~-~~~li~D~a~~~~~~----~~~~~~~------di~~~s~sK~~~~~G--~G~~~~~~~~~~~ 215 (360)
T 1w23_A 157 QYQ--NF---P---EIN-HAPLIADMSSDILSR----PLKVNQF------GMIYAGAQKNLGPSG--VTVVIVKKDLLNT 215 (360)
T ss_dssp ECS--SC---C---CCC-SSCEEEECTTTTTSS----CCCGGGC------SEEEEETTTTTSCTT--CEEEEEEHHHHCS
T ss_pred ecc--cc---c---ccC-CceEEEechhhcCCC----CcCcccC------CEEEEEcccccCCCC--cEEEEEcHHHHhh
Confidence 987 22 2 378 999999999987432 1122222 388999999998556 8999999988765
Q ss_pred HHHHh------------hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCC-eec-CC--
Q 012124 323 CNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP-- 385 (470)
Q Consensus 323 l~~~~------------~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~-~~-- 385 (470)
+.... .....+++...+.++..+++.. .+. ++++++++++++++++.+.|++++++ ... .+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 293 (360)
T 1w23_A 216 KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWI--KDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGS 293 (360)
T ss_dssp CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGG
T ss_pred cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchh
Confidence 54321 0112345666666666666531 012 67889999999999999999988655 543 23
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.+++++|+++++.. +..++.++|.+ .||.+.||..+ ++++|++++. +++++++++++|++++++
T Consensus 294 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~-~gi~~~~~~~~--~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 294 RSLMNVTFNLRNEE-----------LNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp BCSSEEEEECSSHH-----------HHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCcEEEEEcCCCc-----------cHHHHHHHHHH-CCeeeecCCCC--CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 34667899987531 45678887765 49999998754 6899999995 889999999999998865
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=265.54 Aligned_cols=326 Identities=15% Similarity=0.190 Sum_probs=247.5
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
++++||+.|.|++ ++.+++++.+.+... .|.+..+..++++++++++ |. +++++++|+++++..++.+
T Consensus 30 ~~~id~~~~~~~~--~~~v~~a~~~~~~~~--~y~~~~~~~~l~~~la~~~----~~----~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEEL--RAETDAAIARVLDSG--RYLLGPELEGFEAEFAAYC----ET----DHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHHT--HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHT----TS----SEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCCC--CHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHH----CC----CeEEEecCHHHHHHHHHHH
Confidence 3678999988875 388889998888653 5766778899999999986 32 2677788889999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +++||+|++++|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ ++||||...+ +++|
T Consensus 98 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i 170 (399)
T 2oga_A 98 LGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHED-HPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDAL 170 (399)
T ss_dssp TTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSS-SSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred hCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCC-CCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHH
Confidence 9 899999999999999999999999999999998743 467999999999988888776 5789999988 8899
Q ss_pred HHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
.++|+++ |++||+|++|+.+. +++. .+..+ ..+++.|| ||.++.+| |+||++++ +++++.+.....
T Consensus 171 ~~l~~~~-~~~li~Dea~~~g~~~~~~---~~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 171 RELADRH-GLHIVEDAAQAHGARYRGR---RIGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp HHHHHHH-TCEECEECTTCTTCEETTE---ETTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHc-CCEEEEECcccccCccCCe---ecccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998653 3221 11111 24888898 79998668 99999986 888888876654
Q ss_pred hc------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeec
Q 012124 329 QF------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 395 (470)
Q Consensus 329 ~~------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~ 395 (470)
.. .+..+.+.+.++...++. +++..+..++.++.+.+.|++++|+.+. .+..+.++|+.+
T Consensus 241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 313 (399)
T 2oga_A 241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLF 313 (399)
T ss_dssp TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSE
T ss_pred cCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEE
Confidence 31 124566766666666653 2334455566678888999888887764 344566566444
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CC------------CCcEEEEeec--CHHHH
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GD------------DTCIRISYAA--SLTTL 450 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-----------~~------------~~~iRls~~~--~~~~i 450 (470)
+-.. .+..++.+.|.++ ||.+.++... +. .+++||++.. +++++
T Consensus 314 ~~~~----------~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi 382 (399)
T 2oga_A 314 TVRT----------ERRDELRSHLDAR-GIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQA 382 (399)
T ss_dssp EEEC----------SSHHHHHHHHHHT-TBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHH
T ss_pred EEEC----------CCHHHHHHHHHHC-CCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHH
Confidence 3210 1677888888765 9999875421 00 1579999885 89999
Q ss_pred HHHHHHHHHHHHhhCC
Q 012124 451 QAAVERIKKGLLTLRP 466 (470)
Q Consensus 451 ~~~l~~l~~~l~~~~~ 466 (470)
+++++.|++++++++.
T Consensus 383 ~~~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 383 LRVIDAVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=271.98 Aligned_cols=333 Identities=14% Similarity=0.096 Sum_probs=230.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCc---------CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA---------GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~---------g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+.+.|..+.+. ++|+.+++++.+.+.. ...|+... ...++|+++++++ | +++++|++|+|+++
T Consensus 18 ~~~~Ld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~ 89 (432)
T 3a9z_A 18 RKVYMDYNATT-PLEPEVIQAVTEAMKE-AWGNPSSSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGGTE 89 (432)
T ss_dssp CCEECBTTTCC-CCCHHHHHHHHHHHHH-CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHH
T ss_pred CcEEeeCCccC-CCCHHHHHHHHHHHHH-hcCCCccCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCChHH
Confidence 56888888876 5688899999998865 33342211 1247777777775 4 46789999999999
Q ss_pred HHHHHHHHhc--------CCCCeEEEcCCCCCCh-----------------HHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 166 SILQAVLAVC--------SPGDEVIIPAPFWVSY-----------------PEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 166 al~~~~~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
++.+++.++. ++||+|++++|+|+.+ ....+..|++++.+|++.+ ++.+|++.|
T Consensus 90 a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l 168 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHH
T ss_pred HHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHH
Confidence 9999999886 5899999999999876 3344557999999998742 346899999
Q ss_pred hhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC----------EEEEEeccccccccCCCCcccccccCCCC
Q 012124 221 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR----------LLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 221 ~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~----------~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
++++++++++|++++|+||||.+++ +++|.++|+++ + ++||+|++|+... ....+..+.
T Consensus 169 ~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~~~~~~~~~~~livDea~~~~~----~~~~~~~~~--- 237 (432)
T 3a9z_A 169 LAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKAL-NQIRAASGLPRVLVHTDAAQALGK----RRVDVEDLG--- 237 (432)
T ss_dssp HHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHH-HHHHHHHTCCCCEEEEECTTTTTT----SCCCHHHHC---
T ss_pred HHhccCCceEEEEECcccCcccccC---HHHHHHHHHhc-CcccccccCCceEEEEEchhhhCC----cccChhhcC---
Confidence 9999989999999999999999999 66788999999 8 9999999997632 122222222
Q ss_pred CceEEEeccCcccccccceeeEEEcCHHH-HHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G~r~G~~~~~~~~-~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
..+++.|+||.+| .|+||++++++. ...+... .....++.+...+.++.++++. ..+++++++++
T Consensus 238 -~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~---~~~~~~~~~~~ 310 (432)
T 3a9z_A 238 -VDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL---VSENCETYEAH 310 (432)
T ss_dssp -CSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred -CCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHH
Confidence 2367899999875 469999998765 2222211 1222345677788777777764 24578889999
Q ss_pred HHHHHHHHHHHhccCCCCeec--CC-----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--
Q 012124 363 FRERRDFLVKSFGELEGVKMS--EP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-- 433 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~~--~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-- 433 (470)
++++++++.+.|++++|+.+. .+ ..+..+++.+++.- .+..++.+.+ + +|.+.+|..+
T Consensus 311 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l--~-~i~~~~G~~~~~ 377 (432)
T 3a9z_A 311 MRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQ----------LRGYMVLAQC--Q-TLLASVGASCHS 377 (432)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTT----------CCHHHHHHHC--S-SEECBSSCGGGG
T ss_pred HHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCC----------CcHHHHHHHh--c-CeEEeccccccC
Confidence 999999999999886565432 32 12323555565410 0455665544 2 7887777544
Q ss_pred -------------CC-----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 434 -------------GD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 434 -------------~~-----~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
+. .+++|++++. +++++++++++|++++++++.+
T Consensus 378 ~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~~ 431 (432)
T 3a9z_A 378 DHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEGP 431 (432)
T ss_dssp GGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 21 2789999997 8999999999999999887654
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=269.31 Aligned_cols=354 Identities=13% Similarity=0.083 Sum_probs=244.3
Q ss_pred cCCCeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+. .++.+.+++.+++.+..+ ....+..+++.++++++.+..+. ..+ |++|+|++++++
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~ 121 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANE 121 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHH
Confidence 466789999883 2333 378999999999876433 23456678888888888877664 334 999999999999
Q ss_pred HHHHHhc-----C---CCCeEEEcCCCCCChHHHHHHcCCE-------------EEEecCcCCCCCcc-C---------H
Q 012124 169 QAVLAVC-----S---PGDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLL-D---------P 217 (470)
Q Consensus 169 ~~~~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~-d---------~ 217 (470)
.+++.+. . ++|.|++.+|+|+++.......+.. +..++....-.+.. | +
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9999887 5 7899999999999987665554332 33333211000000 1 8
Q ss_pred HhHhhhcc----CCceEEEEcCC-CCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p-~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
+.|+++++ +++++|+++.+ || ||..+ +.+++++|.++|++| |+++|+||+|.+|.+.+.. ...... +
T Consensus 202 ~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~~~~~~----~ 274 (452)
T 3n5m_A 202 KEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH-GALLISDEVICGFGRTGKA-FGFMNY----D 274 (452)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGT----T
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc-CCEEEEecchhCCCccccc-chhhhc----C
Confidence 89999886 56777778777 89 99766 888899999999999 9999999999987554431 111111 1
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
....+.||||.++ .| +|+||+++++++++.+.. .....+++.+++++.++.++|+.... ++.+++.++..+
T Consensus 275 ~~~di~t~sK~l~-~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~ 352 (452)
T 3n5m_A 275 VKPDIITMAKGIT-SAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-ENLIERSAQMGS 352 (452)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHH
T ss_pred CCCCEEeeccccc-CCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 1122457999998 69 999999999999887743 11335677899999999998874211 344555555555
Q ss_pred HHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEE
Q 012124 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRIS 442 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls 442 (470)
..++.+.+.+.+++.+....+.+. ++++.+.+..... ... ......++++.|+++ ||.+.|+..|.. ++++||+
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~-~~~-~~~~~~~~~~~l~~~-Gv~~~~~~~~~~~~~~~iRi~ 428 (452)
T 3n5m_A 353 LLLEQLKEEIGEHPLVGDIRGKGL-LVGIELVNDKETK-EPI-DNDKIASVVNACKEK-GLIIGRNGMTTAGYNNILTLA 428 (452)
T ss_dssp HHHHHHHHHHTTCTTEEEEEESSS-CEEEEEEEETTTT-EEC-CHHHHHHHHHHHHHT-TEECEECTTSSTTCCCEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCCccc-CCC-CHHHHHHHHHHHHHC-CcEEeecCcccCCCCCEEEEE
Confidence 556666665566655555444444 4666664321000 000 000124677777765 999999886642 5799998
Q ss_pred eec--CHHHHHHHHHHHHHHHHh
Q 012124 443 YAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 443 ~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
++. +++++++++++|++++++
T Consensus 429 ~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 429 PPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 554 999999999999999865
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=274.26 Aligned_cols=371 Identities=16% Similarity=0.163 Sum_probs=250.4
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~------~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 143 (470)
++..+.++.......+...+...|.++++++.|.+ +..+ +.+.+++.+.+..+...|++..+..+|+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~ 88 (467)
T 1ax4_A 10 RIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKEL 88 (467)
T ss_dssp EEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHH
T ss_pred hhceeecccccchhHHHHHHHhcCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhhcccccccCccHHHHHHHHHHH
Confidence 34444444444444445555555655566665553 2222 5566667777666666788888999999999998
Q ss_pred HHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC----CCCe---EEEcCCCCCChHHHHHHcCCEEEEecCcC----C--
Q 012124 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDE---VIIPAPFWVSYPEMARIADATPVILPTRI----S-- 210 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~----~gd~---Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~-- 210 (470)
+. .++|++|+|+++++.++++++++ +||+ |+++.+.|..+...+...|++++.++... +
T Consensus 89 ~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 160 (467)
T 1ax4_A 89 FN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETY 160 (467)
T ss_dssp HC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSC
T ss_pred cC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceeccccccccccccc
Confidence 73 26999999999999999999988 9998 99987666777778888999998876532 1
Q ss_pred --CCCccCHHhHhhhccC----CceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc--c--------
Q 012124 211 --ENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--I-------- 273 (470)
Q Consensus 211 --~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--~-------- 273 (470)
.++.+|++.|++++++ ++++|++++||||| |.+++.+++++|+++|++| |++||+|+++.. .
T Consensus 161 ~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~-gi~li~De~~~~~~~~~~~~~~~ 239 (467)
T 1ax4_A 161 DDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDP 239 (467)
T ss_dssp CTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHCG
T ss_pred CCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc-CCEEEEEchhhhhcchhcccccc
Confidence 1345899999999963 68999999999999 8999999999999999999 999999998543 1
Q ss_pred ccCCCCcccccccCCC--CCceEEEeccCcccccc-cceeeEEEcC-H-HHHHHHHHHhhhc----cCC-CChHHHHHHH
Q 012124 274 IYAPATHTSFASLPGM--WERTLTVNGFSKAFAMT-GWRLGYIAGP-K-HFVAACNKIQSQF----TSG-ASSISQKAGV 343 (470)
Q Consensus 274 ~~~~~~~~~~~~~~~~--~~~~i~i~S~sK~~~~~-G~r~G~~~~~-~-~~~~~l~~~~~~~----~~~-~~~~~q~a~~ 343 (470)
.+.+. ++..+.+. ....+++.|+||.++++ | ||++++ + ++++.+....... ..+ .+...+.++.
T Consensus 240 ~~~~~---~~~~~~~~~~~~~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 313 (467)
T 1ax4_A 240 KYKNA---TIKEVIFDMYKYADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMV 313 (467)
T ss_dssp GGTTC---CHHHHHHHHGGGCSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHH
T ss_pred ccCCC---chhhhhhhhccccceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHH
Confidence 12221 12111100 00115668999999855 3 677777 6 7888776554321 122 2333333333
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012124 344 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423 (470)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 423 (470)
..++.... ++.+++ ..++++.+.+.|++ +|+.+..|.+++++|+++...... .. ....+..++++.|+++.
T Consensus 314 ~~l~~~~~-~~~~~~----~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~L~~~~ 384 (467)
T 1ax4_A 314 QGLEEGTE-EEYLHY----RIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQ-IP--GDQFPAQAVINALYLES 384 (467)
T ss_dssp HHHHHTTC-HHHHHH----HHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTT-SC--GGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhh-hhHHHH----HHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhccc-cc--cCCCCHHHHHHHHHHhc
Confidence 34543211 123322 23566778888877 478877788899999983211000 00 00014678888884556
Q ss_pred CEEEEC-CCCC-------C-----CCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012124 424 QVALVP-GDAF-------G-----DDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 424 gI~v~p-g~~f-------~-----~~~~iRls~~---~~~~~i~~~l~~l~~~l~~~~ 465 (470)
||.+.| |..| + ..+++||++. .+++++++++++|++++++.+
T Consensus 385 gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 385 GVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp CEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred CceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 999999 5432 1 1378999998 389999999999999887653
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=272.20 Aligned_cols=351 Identities=14% Similarity=0.129 Sum_probs=228.2
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.|.. .+. .++.+.+++.+++.+....+.+.....+|++.++++ .+ .+++|++|+|++++++
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~----~~---~~~~v~~~~sGsea~~ 125 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEA----MP---ALDKVRFVNSGTEAVM 125 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHH----CT---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHh----CC---CCCEEEEeCchHHHHH
Confidence 4678899998864 343 378999999998876432222544555666666655 33 5689999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCE-EEEecCcCCCCCc------------cCHHhHhhhcc---CCceE
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFL------------LDPKVLESKLT---EKSRL 230 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~ 230 (470)
.+++.+.. +++.|++.+|+|+++...+...+.. ...+......+.. -|++.|+++++ +++++
T Consensus 126 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 205 (434)
T 3l44_A 126 TTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAA 205 (434)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEE
Confidence 99988754 7799999999999876544332221 1111111001000 18899999886 34555
Q ss_pred EEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcccccccc
Q 012124 231 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 231 i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
|+++.++|++|... +++++++|.++|++| |++||+||+|.+| ..+... .......+ .+.||||.++ +|+
T Consensus 206 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~illI~DEv~~g~-~~g~~~~~~~~~~~~------di~t~sK~~~-~G~ 276 (434)
T 3l44_A 206 ILVEPIVGNFGIVEPKPGFLEKVNELVHEA-GALVIYDEVITAF-RFMYGGAQDLLGVTP------DLTALGKVIG-GGL 276 (434)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTT-TSSSSCHHHHHTCCC------SEEEEEGGGG-TTS
T ss_pred EEEcCCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccce-eccccHHHHHcCCCC------Ceeehhhhhc-CCc
Confidence 55555566777655 899999999999999 9999999999987 433211 11112222 1568999998 999
Q ss_pred eeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 309 RLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
|+||+++++++++.+... ....+++.+++.|.++.++|+.... ++.+++.++..+..++.+.+.+.+++......
T Consensus 277 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~- 354 (434)
T 3l44_A 277 PIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQAAKHNIDITLN- 354 (434)
T ss_dssp SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-
T ss_pred CeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE-
Confidence 999999999998877652 2334677899999999988874321 34444444444444444444443343223333
Q ss_pred CceEEEeeeccCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
..|.++++.+.+........ ........++++.|+++ ||.+.|+. .+++|+++..+++++++++++|++++++
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 355 RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNLAPSK----YEAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEECCSST----TCCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEEeecC----CCcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 33445666663210000000 00000235677887766 99999874 3578998777999999999999999987
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
++
T Consensus 430 ~~ 431 (434)
T 3l44_A 430 LA 431 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=272.69 Aligned_cols=325 Identities=14% Similarity=0.148 Sum_probs=237.5
Q ss_pred CeEEccCC-CCCCCChHHHHHHHHHH----HHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 95 SVIRLAAG-EPDFDTPVLIAEAGINA----IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 95 ~~i~l~~g-~~~~~~~~~~~~a~~~~----~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
++|.++.| +|+.++|+.+.++.... ...+...|+ ..|.+ +++++++++.+.+|. +++++++|+++++..
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~ 163 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSA 163 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHH
Confidence 35788887 78877777666665432 222456675 55666 899999999988774 377778888899998
Q ss_pred HHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
++. ++++||+|++++|+|+++... ++..|++++.++.+ |++.|++++++++++|++++|+||||.+++
T Consensus 164 ~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 164 VTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhccCceEEEEeCCCCCCCEeec
Confidence 875 789999999999999998764 46689999999862 899999999989999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc-ccceeeEEEcC-HHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAAC 323 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~~-~~~~~~l 323 (470)
+++|+++|++| |++||+|++|.... ...++ . .+.++++.|+||.++. .|+|+||++++ +++++.+
T Consensus 236 ---l~~i~~la~~~-gi~livDea~~~g~----~~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 236 ---IRKISEMAHAQ-GALVLVDNSIMSPV----LSRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp ---HHHHHHHHHTT-TCEEEEECTTTCTT----TCCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEECCCcccc----cCChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHH
Confidence 88999999999 99999999997521 11121 1 3578999999999863 38999999998 5888888
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH----------HHHhccCCCCeecCCC---ceEE
Q 012124 324 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL----------VKSFGELEGVKMSEPQ---GAFY 390 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l----------~~~L~~~~g~~~~~~~---~g~~ 390 (470)
.........+.+++.|.++...++. ....+++..+......+++ .+.|+++|++++..+. .|.+
T Consensus 303 ~~~~~~~g~~~~~~~~~a~~~al~~---~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~ 379 (464)
T 1ibj_A 303 YFLQNSEGSGLAPFDCWLCLRGIKT---MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV 379 (464)
T ss_dssp HHHHHHTTCBCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE
T ss_pred HHHHHhcCCCCCHHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceE
Confidence 8777656667789999888888764 1222332222222222333 2344455666665553 2335
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC------------CC----------CC-CCcEEEEeecCH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD------------AF----------GD-DTCIRISYAASL 447 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~------------~f----------~~-~~~iRls~~~~~ 447 (470)
+++++++. .....+++.|. ..||.+.+|. .+ +. ++++|++++.
T Consensus 380 ~~~~l~~~-----------~~~~~~~~~L~-~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~-- 445 (464)
T 1ibj_A 380 FSFITGSV-----------ALSKHLVETTK-YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI-- 445 (464)
T ss_dssp EEEECSCH-----------HHHHHHHHHCS-SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--
T ss_pred EEEEECCH-----------HHHHHHHHhcC-cceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--
Confidence 77777431 02345766664 3588888885 12 22 4689999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 012124 448 TTLQAAVERIKKGLLT 463 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~ 463 (470)
+++++++++|++++++
T Consensus 446 edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 446 EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7899999999999875
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-30 Score=262.10 Aligned_cols=329 Identities=14% Similarity=0.096 Sum_probs=238.4
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCC---CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFT---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.++||..|.+. +. .++.+.+++.+++.+... .| +.....++++.++++ +| .++|++++|+++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~----~g----~~~v~~~~sGse 144 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKL----FN----YHKVLPMNTGVE 144 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHH----HT----CSEEEEESSHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHh----cC----CCEEEEeCCHHH
Confidence 46788999998653 44 689999999999865321 12 223344555555554 34 479999999999
Q ss_pred HHHHHHHHhc---------CCC-CeEEEcCCCCCChHH-HHHHcC------------CEEEEecCcCCCCCccCHHhHhh
Q 012124 166 SILQAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 166 al~~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++..+++.+. .+| |.|++.+|+|++... .+...| .+++.+|. .|++.|++
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~ 217 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALER 217 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHH
Confidence 9999998864 367 899999999988654 444444 45666664 28999999
Q ss_pred hcc-CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 223 KLT-EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 223 ~l~-~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
+++ +++++|++...+|+||. .++.+.+++|.++|++| |+++|+||+|.++.+.+.. ..+....- ... +.|||
T Consensus 218 ~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~g~~g~~-~~~~~~~~-~~D---i~t~s 291 (439)
T 2oat_A 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRW-LAVDYENV-RPD---IVLLG 291 (439)
T ss_dssp HTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEEEC
T ss_pred HhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCcc-hhHHHhCC-CCc---EEEec
Confidence 994 66776666555678996 56999999999999999 9999999999876544421 11111111 112 23899
Q ss_pred ccccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 301 KAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 301 K~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
|.++ +| +|+||+++++++++.+.......+++.+++.+.++.++|+.. ++ ++..++++++++++.+.|+++ +
T Consensus 292 K~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l-~ 364 (439)
T 2oat_A 292 KALS-GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL---EE--ENLAENADKLGIILRNELMKL-P 364 (439)
T ss_dssp GGGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHTTS-C
T ss_pred cccc-CCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHHh-c
Confidence 9998 79 999999999998877765444566778999999888888741 11 245677788888999999876 4
Q ss_pred Cee--cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHH
Q 012124 380 VKM--SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 380 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~ 455 (470)
+.+ ..+..|.++|+++++.. ..+..++++.|+++ ||.+.|+. ++++|++++. ++++++++++
T Consensus 365 ~~~~~~~~~~g~~~~v~l~~~~---------~~~~~~l~~~l~~~-Gv~v~~~~----~~~iRi~~~~~~t~e~i~~~l~ 430 (439)
T 2oat_A 365 SDVVTAVRGKGLLNAIVIKETK---------DWDAWKVCLRLRDN-GLLAKPTH----GDIIRFAPPLVIKEDELRESIE 430 (439)
T ss_dssp TTTEEEEEEETTEEEEEECCCS---------SCCHHHHHHHHHHT-TEECCBSS----SSEEEECCCTTCCHHHHHHHHH
T ss_pred CCCcEEEEeeeeEEEEEEecCc---------cHHHHHHHHHHHHC-CeEEecCC----CCEEEEECccCCCHHHHHHHHH
Confidence 332 12234566888887520 01577899988875 99998842 5789998764 9999999999
Q ss_pred HHHHHHHh
Q 012124 456 RIKKGLLT 463 (470)
Q Consensus 456 ~l~~~l~~ 463 (470)
+|++++++
T Consensus 431 ~l~~~l~~ 438 (439)
T 2oat_A 431 IINKTILS 438 (439)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=264.64 Aligned_cols=329 Identities=13% Similarity=0.092 Sum_probs=239.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
+.+.|..|. ..+++.+.+++.+... ..|.+. ....++++.+++++....| +++++|++|+|+++++.+++.
T Consensus 5 ~~~~~~p~p--~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~ 77 (385)
T 2bkw_A 5 VDTLLIPGP--IILSGAVQKALDVPSL---GHTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFAS 77 (385)
T ss_dssp CCEECSSSS--CCCCHHHHHTTSCCCC---CTTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHH
T ss_pred cceeecCCC--cCchHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHH
Confidence 335666652 3346777777654322 122221 1355677888887764333 457899999999999999999
Q ss_pred Hhc---CCCCeEEEc-CCCCCChH-HHHHHcCCEEEEecC-cCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccCCC
Q 012124 173 AVC---SPGDEVIIP-APFWVSYP-EMARIADATPVILPT-RISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 173 ~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~~~v~~-~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~~s 245 (470)
++. ++||+|++. .|.|+.+. ..++..|++++.+++ + .++.+|++.|++++++ ++++|++++++||||.+++
T Consensus 78 ~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 155 (385)
T 2bkw_A 78 NFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK--IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD 155 (385)
T ss_dssp HHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS--TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC--CCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC
Confidence 997 899999877 55665553 677889999999998 5 3456899999999976 8999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHH-H
Q 012124 246 KNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVA-A 322 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~-~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~-~ 322 (470)
+++|+++|++|+ |++||+|++|+... ...+ +.. .+.++++.|+||.++ .+| +||+++++++++ .
T Consensus 156 ---l~~i~~~~~~~~~~~~li~D~a~~~~~----~~~~---~~~-~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~ 222 (385)
T 2bkw_A 156 ---LKAISQAIKQTSPETFFVVDAVCSIGC----EEFE---FDE-WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYA 222 (385)
T ss_dssp ---HHHHHHHHHHHCTTSEEEEECTTTTTT----SCCC---TTT-TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHH
T ss_pred ---HHHHHHHHHhhCCCCEEEEECccccCC----cccc---ccc-cCceEEEecCccccccCCc--ceEEEEcHHHHHHH
Confidence 778999999973 69999999997421 1112 222 245689999999764 456 599999998876 4
Q ss_pred HH------------------HH-hhhc------cCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHh-c
Q 012124 323 CN------------------KI-QSQF------TSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSF-G 375 (470)
Q Consensus 323 l~------------------~~-~~~~------~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~L-~ 375 (470)
+. .. .... ..+.+...+.++..+++. ..+. +++++++++++++++.+.| +
T Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~ 299 (385)
T 2bkw_A 223 LNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVN 299 (385)
T ss_dssp TCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 42 11 0111 134667777777777764 1333 6788899999999999999 8
Q ss_pred cCCCCeecCCC-----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-CCCcEEEE-ee----
Q 012124 376 ELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-DDTCIRIS-YA---- 444 (470)
Q Consensus 376 ~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-~~~~iRls-~~---- 444 (470)
++ |+++..+. .+.++|+.++ +..++.+.|.+ +||.+.+|..+. .++++|++ ++
T Consensus 300 ~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~iRis~~~~~~~ 363 (385)
T 2bkw_A 300 GL-QLTSVSRYPSNMSAHGLTAVYVA--------------DPPDVIAFLKS-HGVVIAGGIHKDIGPKYIRIGHMGVTAC 363 (385)
T ss_dssp TT-CCEESSCSSSTTBCSSCEEEECS--------------CHHHHHHHHHH-TTEECBCCCCTTTGGGEEEECCCGGGTS
T ss_pred hc-CceecccCcccccCCceEEEecC--------------CHHHHHHHHHH-CCeEEeCCCCcccCCCEEEEEccccccc
Confidence 88 88876532 4666888875 35678888865 599999987653 35789999 66
Q ss_pred -cCHHHHHHHHHHHHHHHHhh
Q 012124 445 -ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 -~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++++++++|+++++++
T Consensus 364 ~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 364 NKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp STTCTHHHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHHHHhc
Confidence 38899999999999987654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=269.71 Aligned_cols=354 Identities=14% Similarity=0.112 Sum_probs=240.5
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|. ..+.. ++.+.+++.+++.+. ..|....+..+++.++++++.+..+.. ..++|++|+|++++++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 136 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVE 136 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHH
Confidence 466789999884 44444 889999999998653 446555677788899999998876532 3579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCC--------------EEEEecCcCC--CC-Ccc--------CHHhHh
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRIS--EN-FLL--------DPKVLE 221 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--~~-~~~--------d~~~l~ 221 (470)
.+++.+.. .++.|++.+++|+++.......+. .+..+|.... +. +++ +++.++
T Consensus 137 ~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (451)
T 3oks_A 137 NAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAI 216 (451)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHH
Confidence 99987654 448999999999988766554322 3455554310 00 001 244444
Q ss_pred hhc----cCCceEEEEcCCCCCcc--cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEE
Q 012124 222 SKL----TEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 295 (470)
Q Consensus 222 ~~l----~~~~~~i~l~~p~nPtG--~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 295 (470)
+.+ .++..+++++.|.|++| ...+.+.+++|.++|++| |++||+||+|.+|.+.+.. ..+..+. ....
T Consensus 217 ~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~----~~pd 290 (451)
T 3oks_A 217 TVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN-DVVFIADEVQTGFARTGAM-FACEHEG----IDPD 290 (451)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGT----CCCS
T ss_pred HHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCCccccc-hhhhhcC----CCCC
Confidence 433 33445566666655544 455788899999999999 9999999999987554431 1122111 1122
Q ss_pred EeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+.||||.++ +|+|+||+++++++++.+.......+++.+++.|.++.++|+.... +++.++.++..+..++.+.+.+.
T Consensus 291 i~t~sK~l~-~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 368 (451)
T 3oks_A 291 LIVTAKGIA-GGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQA 368 (451)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhh-CCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 448999998 6999999999999998887666667888999999999998874211 23344444444445555555555
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAA 453 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~ 453 (470)
+++.+....+. |.++|+.+.+...... ...+..++++.|+++ ||.+.|+..| .+++|++++. ++++++++
T Consensus 369 ~~~~~~~~~~~-G~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~-Gv~v~~~~~~--~~~iRi~~~~~~t~e~i~~~ 440 (451)
T 3oks_A 369 EDDRIGDVRGR-GAMIAMELVKAGTTEP----DADLTKALCAGAHAA-GVIVLSCGTY--GNVVRFLPPLSIGDDLLNEG 440 (451)
T ss_dssp HCTTEEEEEEE-TTEEEEEEBSTTSCCB----CHHHHHHHHHHHHHT-TEECEEECTT--SCEEEECCCTTCCHHHHHHH
T ss_pred hCCCeEEEEEe-eEEEEEEEecCccCCC----CHHHHHHHHHHHHhC-CcEEecCCCC--CCEEEEECCCCCCHHHHHHH
Confidence 55544443333 5567777732100000 001356788888766 9999997655 3689998764 89999999
Q ss_pred HHHHHHHHHh
Q 012124 454 VERIKKGLLT 463 (470)
Q Consensus 454 l~~l~~~l~~ 463 (470)
+++|++++++
T Consensus 441 l~~l~~~l~~ 450 (451)
T 3oks_A 441 LDVLEEVLRG 450 (451)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999999874
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-31 Score=271.27 Aligned_cols=325 Identities=13% Similarity=0.104 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcE--EEecChHHHHHHHHHHhcCCC--------C
Q 012124 110 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVCSPG--------D 179 (470)
Q Consensus 110 ~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i--~it~g~~~al~~~~~~l~~~g--------d 179 (470)
+.+.+++.+........|....+..++++.+++++.+.+|.+.+++++ ++|+|+++++..+++++.++| |
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d 193 (514)
T 3mad_A 114 AFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAP 193 (514)
T ss_dssp HHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 344444444444445566666778899999999999988976656788 999999999999999998776 9
Q ss_pred eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012124 180 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 180 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
+|+++.|+|+++...++..|++++.+|++. ++.+|++.|++++++++++|++++|+||||.+.+ +++|.++|++|
T Consensus 194 ~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~ 268 (514)
T 3mad_A 194 EAVVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEH 268 (514)
T ss_dssp EEEEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHH
T ss_pred eEEEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHh
Confidence 999999999999999999999999999974 5669999999999999999999999999999999 78999999999
Q ss_pred CCEEEEEeccccccccC-----CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh------
Q 012124 260 PRLLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------ 328 (470)
Q Consensus 260 ~~~~iI~Dd~~~~~~~~-----~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------ 328 (470)
|++||+|++|+++.+. +...+.+. ... .+..+++.|++|.+. +|.++||++++++..........
T Consensus 269 -~i~livDea~~~~~~~~~~~~g~~~~~~~-~~~-~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 344 (514)
T 3mad_A 269 -GIGCHVDACLGGFILPWAERLGYPVPPFD-FRL-EGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGG 344 (514)
T ss_dssp -TCEEEEECTTTTTTHHHHHHTTCCCCCCS-TTS-TTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTC
T ss_pred -CCeEEEecccccccchhHHhcCCCCCccc-ccC-CCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCC
Confidence 9999999999986541 11111222 111 355788999999974 78899999987765543211000
Q ss_pred -----hccCCCChH---HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 329 -----QFTSGASSI---SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 329 -----~~~~~~~~~---~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
......+.. .+.++...+. ..+++++.++..++++++.+.|++++|+++..+..+ ++|+..+..
T Consensus 345 ~~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-- 416 (514)
T 3mad_A 345 LYFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-- 416 (514)
T ss_dssp SEEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS--
T ss_pred cccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC--
Confidence 001122222 2333333332 456788888889999999999999889988766656 466666432
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHHHHHHHHHHHhhC
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~l~~l~~~l~~~~ 465 (470)
+..++.+.|.++ ||.+ +|..| ++++|++++. +++++++++++|++++++++
T Consensus 417 ----------~~~~l~~~L~~~-Gi~v-~g~~~--~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 417 ----------NIYQVMEEMAGR-GWRL-NGLHR--PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp ----------CHHHHHHHHHTT-TCBC-EEETT--TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHhc-CCEe-ccCCC--CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899988766 8887 55433 5789999983 56899999999999998764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=265.12 Aligned_cols=330 Identities=12% Similarity=0.070 Sum_probs=251.5
Q ss_pred ChHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC-----CC
Q 012124 108 TPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-----PG 178 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~-----~g 178 (470)
.++.+.+++.+++.. ....|...+|..++++.+++++.+.+|.+.+++++++|+|+++++.++++++.+ +|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 356777777777765 345566677888999999999999999866688999999999999999998865 56
Q ss_pred ---CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHH
Q 012124 179 ---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255 (470)
Q Consensus 179 ---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~ 255 (470)
|+|+++.|+|+.+...++..|++++.+|++. +++.+|++.|++++++++++|++++|+||||.+.+ +++|.++
T Consensus 156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~l 231 (497)
T 3mc6_A 156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGKI 231 (497)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTTH
T ss_pred CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHHH
Confidence 8999999999999999999999999999874 35679999999999999999999999999999998 7789999
Q ss_pred HHhCCCEEEEEeccccccccC-----CCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhc
Q 012124 256 VAKHPRLLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 330 (470)
Q Consensus 256 ~~~~~~~~iI~Dd~~~~~~~~-----~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~ 330 (470)
|++| |+++|+|++|+.+... +....+...... .+..+++.|++|.++ ++.++||++++++.+..........
T Consensus 232 a~~~-g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~-~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~ 308 (497)
T 3mc6_A 232 AQKY-KLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRV-PGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPA 308 (497)
T ss_dssp HHHT-TCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTS-TTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred HHHh-CCEEEEECcchhhhhhhhhhhcccCCccccccC-CCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhccccc
Confidence 9999 9999999999864321 111110111111 345688899999874 7889999998876654332111100
Q ss_pred -cC----CC------C---hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecC-CCceEEEeee
Q 012124 331 -TS----GA------S---SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSE-PQGAFYLFID 394 (470)
Q Consensus 331 -~~----~~------~---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~-~~~g~~~~~~ 394 (470)
.. .. + ..++.++...+. ...+++..++..++++++.+.|++ ++|+++.. +..++ +++.
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~-v~~~ 382 (497)
T 3mc6_A 309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMG-----ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSV-ISFS 382 (497)
T ss_dssp CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSE-EEEE
T ss_pred ccCCCcCCcCcccCCcchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeE-EEEe
Confidence 00 00 0 333555555553 455677888888899999999999 68998764 44555 4445
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.+.. +..++.+.|.++ ||.+.++. .+..+|++++. +++++++++++|++++++++.
T Consensus 383 ~~~~------------~~~~l~~~L~~~-Gi~v~~~~---~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 383 SKTL------------NIHELSDRLSKK-GWHFNALQ---KPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp CTTT------------THHHHHHHHHTT-TCBCEECC---SSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred CCCC------------CHHHHHHHHHhC-CEEEecCC---CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5432 678899988766 89887654 24578999987 889999999999999987754
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=262.11 Aligned_cols=333 Identities=14% Similarity=0.091 Sum_probs=229.5
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||..|.+ ++. .++.+.+++.+++.+.. .|. .....+++..+++.+.+..| .++|++++|+++++.
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~-~~~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~ 136 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICS-RAFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 136 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCC-TTSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-Ccc-CCcCCHHHHHHHHHHHhhcC----CCeEEEeCCHHHHHH
Confidence 4667899998753 555 68999999999986532 221 11234555666666655554 479999999999999
Q ss_pred HHHHHhc---------CCC-CeEEEcCCCCCChHH-HHHHcC------------CEEEEecCcCCCCCccCHHhHhhhc-
Q 012124 169 QAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLESKL- 224 (470)
Q Consensus 169 ~~~~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~~~l~~~l- 224 (470)
.+++.+. .+| |.|++.+|+|+++.. .+...| ..++.+|. .|++.|++++
T Consensus 137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 209 (433)
T 1z7d_A 137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9998753 478 999999999988654 333333 24445553 2899999999
Q ss_pred cCCceEEEEcCCCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc
Q 012124 225 TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
++++++|+++..+|+||.. ++.+.+++|.++|++| |++||+||+|.++.+.+.. ..+....- ... +.||||.+
T Consensus 210 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~g~~g~~-~~~~~~~~-~~d---i~t~sK~l 283 (433)
T 1z7d_A 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKL-LCVHHYNV-KPD---VILLGKAL 283 (433)
T ss_dssp STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS---EEEECGGG
T ss_pred CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCccCCCcCCcc-hhhHhcCC-CCC---EEEECccc
Confidence 5677776665557789974 7888999999999999 9999999999876544321 11111111 111 33899999
Q ss_pred cccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----C
Q 012124 304 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----E 378 (470)
Q Consensus 304 ~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 378 (470)
+ +| +|+||+++++++++.+.......+++.+++.+.++.++|+.. ++ ++..++++++++++.+.|+++ +
T Consensus 284 ~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 284 S-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL---IN--EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp G-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8 89 999999999998877655444566778999998888888641 11 234555566666666666543 3
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHH
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~ 456 (470)
.+.... ..|.++|+.+++.. .+..++++.|+++ ||.+.|+ ..+++|++++. +++++++++++
T Consensus 358 ~~~~~~-~~g~~~~i~~~~~~----------~~~~~~~~~l~~~-Gv~v~~~----~~~~iRi~~~~~~t~e~i~~~l~~ 421 (433)
T 1z7d_A 358 IVRDVR-GKGLLCAIEFKNEL----------VNVLDICLKLKEN-GLITRDV----HDKTIRLTPPLCITKEQLDECTEI 421 (433)
T ss_dssp TEEEEE-EETTEEEEEECTTT----------CCHHHHHHHHHHT-TEECCEE----TTTEEEECCCTTCCHHHHHHHHHH
T ss_pred CeEEEE-eeeeEEEEEEccCh----------hHHHHHHHHHHHC-CeEEecC----CCCEEEEECCcCCCHHHHHHHHHH
Confidence 222222 34556888886420 1577899988875 9999885 25789998764 99999999999
Q ss_pred HHHHHHhhC
Q 012124 457 IKKGLLTLR 465 (470)
Q Consensus 457 l~~~l~~~~ 465 (470)
|+++++++.
T Consensus 422 l~~~l~~~~ 430 (433)
T 1z7d_A 422 IVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-31 Score=265.31 Aligned_cols=353 Identities=11% Similarity=0.037 Sum_probs=236.5
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.+ .+.. ++.+.+++.+++.+. ..|....+..+.+.++++++.+..+ ...++|++|+|+++++.
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 118 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI-AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAME 118 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC-SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 4667899998743 3333 789999999998764 3344556777889999999988765 34589999999999999
Q ss_pred HHHHHhcC----CC----CeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCc-----------cC
Q 012124 169 QAVLAVCS----PG----DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFL-----------LD 216 (470)
Q Consensus 169 ~~~~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-----------~d 216 (470)
.+++.+.. +| |+|++.+|+|+++.......+. .+..++.. +.+. .|
T Consensus 119 ~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 196 (448)
T 3dod_A 119 IALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQC 196 (448)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHH
Confidence 99998865 44 9999999999987654433322 22334432 2111 14
Q ss_pred HHhHhhhcc---CCceEEEEcCCC-CCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 217 PKVLESKLT---EKSRLLILCSPS-NPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 217 ~~~l~~~l~---~~~~~i~l~~p~-nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
++.|+++++ +++++|++..++ |++| .+++.+++++|.++|++| |++||+||+|.+|.+.+... ......
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~-a~~~~~---- 270 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY-DVLMIVDEVATGFGRTGKMF-ACEHEN---- 270 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-GGGGGT----
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccchh-hhhhcC----
Confidence 788998886 456666666666 8888 566888899999999999 99999999999875544321 111111
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
....+.+|||.++ +| +|+||+++++++++.+.. .....+++.+++.|.++.++|+.... ++++++.++..
T Consensus 271 ~~~di~t~sK~l~-~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~ 348 (448)
T 3dod_A 271 VQPDLMAAGKGIT-GGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES-ENIVEQVAEKS 348 (448)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred CCCCEEEeccccc-CCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 1122457999998 79 599999999999988765 44446778899999999998874211 34455666666
Q ss_pred HHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 364 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 364 ~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
+..++.+.+ +.+++.+.... ..|.++|+.+++...... ...... ...++++.|+++ ||.+.|+ .+++|++
T Consensus 349 ~~~~~~l~~-l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----~~~iRi~ 419 (448)
T 3dod_A 349 KKLHFLLQD-LHALPHVGDIR-QLGFMCGAELVRSKETKE-PYPADRRIGYKVSLKMREL-GMLTRPL-----GDVIAFL 419 (448)
T ss_dssp HHHHHHHHH-HTTSTTEEEEE-EETTEEEEEECSBTTTTB-CCCGGGCHHHHHHHHHHHT-TEECCEE-----TTEEEEC
T ss_pred HHHHHHHHH-HhcCCCeEEEE-eeeEEEEEEEccCccccc-ccchhhHHHHHHHHHHHHC-CcEEecc-----CCEEEEE
Confidence 666666666 65564443333 335567888865311000 000000 036788888876 9999886 2789996
Q ss_pred ee--cCHHHHHHHHHHHHHHHHhhCC
Q 012124 443 YA--ASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 443 ~~--~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
++ .+++++++++++|+++++++..
T Consensus 420 ~~~~~t~e~i~~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 420 PPLASTAEELSEMVAIMKQAIHEVTS 445 (448)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 55 4999999999999999987653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=260.53 Aligned_cols=327 Identities=13% Similarity=0.070 Sum_probs=230.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
....+..|.+++++++.+.+++.+.+ ....|++..+..+|++.+++++. . +..++++|+++++.++++++
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~--~~~~~~~~~~~~~l~~~la~~~~----~----~~~i~~~~g~~a~~~a~~~~ 83 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNL--ESDIYGNGAVIEDFETKIAKILG----K----QSAVFFPSGTMAQQIALRIW 83 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTC--BCCBTTBSHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhc--ccCcccCCHHHHHHHHHHHHHhC----C----CcEEEeCCHHHHHHHHHHHH
Confidence 34455556566556788888887743 24567777788899999998863 2 23355578889999999999
Q ss_pred cCCCCe--EEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc-ccCCCHHH
Q 012124 175 CSPGDE--VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNL 248 (470)
Q Consensus 175 ~~~gd~--Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt-G~~~s~~~ 248 (470)
+.+||. |+++.++|.... ......|++++.++.+ ++.+|++.|+++ .+++++|++++||||| |.+++.++
T Consensus 84 ~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 84 ADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA---NQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp HHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT---TSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred HhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc---CCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHH
Confidence 889987 555555543222 2235679999999873 356999999998 7789999999999998 79999999
Q ss_pred HHHHHHHHHhCCCEEEEEecccccccc--CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 326 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~--~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~ 326 (470)
+++|+++|++| |++||+|++|..+.. .+. +...+.. ...+++.||||.++.+ .. ||+++++++++.+...
T Consensus 160 l~~l~~~~~~~-~~~li~D~a~~~~~~~~~~~---~~~~~~~--~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~~~ 231 (359)
T 3pj0_A 160 LEKISEYCHEQ-GISLHLDGARLWEITPFYQK---SAEEICA--LFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAKIW 231 (359)
T ss_dssp HHHHHHHHHHH-TCEEEEEETTCGGGHHHHTC---CHHHHHT--TCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEECcchhcchhhhCC---CHHHhhc--cCCEEEEeccccCCCc-ce-EEEECCHHHHHHHHHH
Confidence 99999999999 999999999865331 111 1112211 2225566899998744 33 8889999999999876
Q ss_pred hhhccCCCC--hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCCceEEEeeeccCccCCcc
Q 012124 327 QSQFTSGAS--SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEA 403 (470)
Q Consensus 327 ~~~~~~~~~--~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~ 403 (470)
+.....+.. ...+.++...++ .+.+ ..+.+.++++.+.+.|++++|+++. .+..+.++|++++....
T Consensus 232 ~~~~~~~~~~~~~~~~a~~~~l~------~~~~-~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 301 (359)
T 3pj0_A 232 KRRYGGDLISLYPYILSADYYFE------KRIG-KMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD--- 301 (359)
T ss_dssp HHHTTCCCSCCHHHHHHHHHHHH------HHGG-GHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH---
T ss_pred HHHhCCCcchhHHHHHHHHHHHH------HHHH-HhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc---
Confidence 554443332 233333333343 2233 3345677888999999998899884 45566667877764200
Q ss_pred cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCC--CcEEEEee-----cCHHHHHHHHHHHHHH
Q 012124 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYA-----ASLTTLQAAVERIKKG 460 (470)
Q Consensus 404 ~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~--~~iRls~~-----~~~~~i~~~l~~l~~~ 460 (470)
.+..++.+.|.++ ||.+.||..|+.+ +++|+++. .+.+++++++++|++.
T Consensus 302 ------~~~~~l~~~l~~~-GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 302 ------EIGAILTKIQDET-GVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp ------HHHHHHHHHHHHH-CEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHhc-CcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 0356777777655 9999999877643 58999886 2789999999999875
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=252.70 Aligned_cols=327 Identities=18% Similarity=0.252 Sum_probs=240.7
Q ss_pred cCCCCCCCC-hHHHHHHHHHHHHcCCCC-CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cC
Q 012124 100 AAGEPDFDT-PVLIAEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CS 176 (470)
Q Consensus 100 ~~g~~~~~~-~~~~~~a~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~ 176 (470)
+.|.|+.++ ++.+++++.+.+...... |++..|..++++.+++.+.+.+|.+ ++++++++++++.+++.++ ++
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~ 80 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIG 80 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC
Confidence 456777666 789999999998775444 8777887777777777777767753 4666777789999999999 89
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~ 256 (470)
+||+|+++.|+|+++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||...+ +++|.++|
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~~~ 153 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDEINEIA 153 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHHHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCccc---HHHHHHHH
Confidence 999999999999999999999999999999864 356799999999998889988754 58998877 88999999
Q ss_pred HhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEcC-HHHHHHHHHHhhhcc-
Q 012124 257 AKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT- 331 (470)
Q Consensus 257 ~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~- 331 (470)
+++ |++||+|++|+.+. +++. .+..+. .+.+.|| ||.++ +| |+||++++ +++++.+........
T Consensus 154 ~~~-~~~li~D~a~~~~~~~~~~---~~~~~~-----~~~~~s~s~~K~~~-~g-~~g~~~~~~~~l~~~~~~~~~~~~~ 222 (418)
T 2c81_A 154 QEH-NLFVIEDCAQSHGSVWNNQ---RAGTIG-----DIGAFSCQQGKVLT-AG-EGGIIVTKNPRLFELIQQLRADSRV 222 (418)
T ss_dssp HHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHHBTTEE
T ss_pred HHC-CCEEEEECcccccCccCCE---eccccc-----ceEEEeccCCcccC-CC-CeEEEEECCHHHHHHHHHHHHhCcc
Confidence 999 99999999999875 4432 121221 2777888 99998 58 99999995 788888876543311
Q ss_pred -----------CC--C---C--------hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CCC
Q 012124 332 -----------SG--A---S--------SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ 386 (470)
Q Consensus 332 -----------~~--~---~--------~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~ 386 (470)
+. . . ...+.+.. +.. .+++++..++.++.++++.+.|.+++|+++. .+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~~----l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 296 (418)
T 2c81_A 223 YCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LDQ----LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPP 296 (418)
T ss_dssp ECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HHH----HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCT
T ss_pred ccccccccccchhhccccccccCcCCCcCHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCC
Confidence 10 0 0 11122111 111 1234566666777788899999888888876 455
Q ss_pred c-eEEEe----eeccC----ccCCcccCCCCCCCHHHHHHHHHHcCCEE---EECCCCC---------------------
Q 012124 387 G-AFYLF----IDFST----YYGSEAEGFGKIENSESLCRYLLDKAQVA---LVPGDAF--------------------- 433 (470)
Q Consensus 387 ~-g~~~~----~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~gI~---v~pg~~f--------------------- 433 (470)
+ +.+.| +.+++ .. +..++.+.|.+++||. +.+|...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~ 365 (418)
T 2c81_A 297 QVSRQTYYGYVFRFDPVKFGGL-----------NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRK 365 (418)
T ss_dssp TEEECCCSEEEEEECGGGTTTC-----------CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHC
T ss_pred CCcccccEEEEEEEcccccccc-----------CHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccc
Confidence 5 33333 66663 21 6788999887765899 8887511
Q ss_pred -------C-C-------CCcEEEEee--c-CHHHHHHHHHHHHHHHHhhC
Q 012124 434 -------G-D-------DTCIRISYA--A-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 434 -------~-~-------~~~iRls~~--~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
+ . .+.|||++. . ++++++.+++.|++++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 366 TEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp CHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 0 0 147999997 3 78999999999999988654
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=262.64 Aligned_cols=322 Identities=11% Similarity=0.084 Sum_probs=236.6
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC-c-EEEecChH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-Q-ILVSNGAK 164 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~---------~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~-i~it~g~~ 164 (470)
++.++.|. .++|+.+++++.+.+.+. ..+| ..+..++++.+.+.+.+.+|. .++ + +++|+|++
T Consensus 5 ~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t 78 (362)
T 2c0r_A 5 AYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGAS 78 (362)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHH
T ss_pred eeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCch
Confidence 46666663 467889999998876431 1112 234566888899999888885 443 5 56789999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCC--CCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+++..++.++++|||+|++.++.+... ...++..| +++.++++.+ .+..+|.+.++ +++++++|++++|+|||
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~t 155 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIE 155 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTT
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCcc
Confidence 999999999999999999887765443 35677789 9999988632 22234665554 67789999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|..++ ++++| + |+++|+|++|+.+.. ...+. +..+++.|+||.+|++| +||++++++++
T Consensus 156 G~~~~--~l~~i------~-~~~vivD~a~~~~~~----~~~~~------~~d~~~~s~~K~~g~~G--~G~l~~~~~~~ 214 (362)
T 2c0r_A 156 GAQFK--AFPDT------G-SVPLIGDMSSDILSR----PFDLN------QFGLVYAGAQKNLGPSG--VTVVIVREDLV 214 (362)
T ss_dssp TEECS--SCCCC------T-TSCEEEECTTTTTSS----CCCGG------GCSEEEEETTTTTCCSS--CEEEEEEGGGS
T ss_pred ceecc--ccccc------C-CCEEEEEChhhccCC----ccchh------HCcEEEEeccccccCcC--cEEEEEcHHHH
Confidence 99754 24444 7 899999999986421 11222 12488889999999778 99999998877
Q ss_pred HHHHHH------------hhhccCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCC-eecCC
Q 012124 321 AACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMSEP 385 (470)
Q Consensus 321 ~~l~~~------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~ 385 (470)
+.+... .....++++.+.|.++..+|+. ..+ .+++++++++++++++.+.|++++++ .+..+
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 291 (362)
T 2c0r_A 215 AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW---IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD 291 (362)
T ss_dssp SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC
T ss_pred hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence 655321 1123456788888988888874 123 67889999999999999999988436 65321
Q ss_pred ---CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 386 ---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 386 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
.++.++|+.+++.. +..++++.|.++ ||.+.||..| .+++|+|++. ++++++.+++.|+++
T Consensus 292 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~L~~~-gi~~~~g~~~--~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 292 VDSRSDMNITFRLASEE-----------LEKEFVKASEQE-GFVGLKGHRS--VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp GGGBCSSEEEEECSCHH-----------HHHHHHHHHHHT-TEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHcCCcEEEEEcCCcc-----------hHHHHHHHHHHC-CCeeccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 23455788887432 567888887655 9999988766 4689999986 889999999999998
Q ss_pred HHhh
Q 012124 461 LLTL 464 (470)
Q Consensus 461 l~~~ 464 (470)
+++.
T Consensus 358 ~~~~ 361 (362)
T 2c0r_A 358 KRSR 361 (362)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=260.01 Aligned_cols=299 Identities=15% Similarity=0.156 Sum_probs=215.0
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--eEEEcCCCCCChHH---HHHHc
Q 012124 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--EVIIPAPFWVSYPE---MARIA 198 (470)
Q Consensus 124 ~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd--~Vlv~~p~y~~~~~---~~~~~ 198 (470)
...|++..+..+|++++++++. . +..++++|+++++.++++++.++|| .|+++.+.|+.... .....
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~----~----~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~ 111 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLG----M----DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELH 111 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHS
T ss_pred cccccCChHHHHHHHHHHHHhC----C----CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhcc
Confidence 3558777889999999999863 2 3345557778899999999988998 67777665443322 45667
Q ss_pred CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc--ccc
Q 012124 199 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--IIY 275 (470)
Q Consensus 199 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--~~~ 275 (470)
|++++.++.+ ++.+|++.|+++. +++++++++||||| |.+++.+++++|+++|++| |++||+|++|.. ..+
T Consensus 112 g~~~~~v~~~---~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~ 185 (357)
T 3lws_A 112 PIETILVGAA---DRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLDGARLFEMLPY 185 (357)
T ss_dssp SCEEEECSCT---TSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHH
T ss_pred CcEEEEecCC---CCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc-CCEEEEECchhhhhhhh
Confidence 9999998852 3459999999984 38999999999998 9999999999999999999 999999999862 111
Q ss_pred CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCC--ChHHHHHHHHHHhcCCCCh
Q 012124 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGG 353 (470)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~--~~~~q~a~~~~l~~~~~~~ 353 (470)
.+.. ...+....+ +++.||||.++.++ .||+++++++++.+.+.+.....+. ....+.++...++.
T Consensus 186 ~~~~---~~~~~~~~d--~~~~s~sK~~~~~~--gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 253 (357)
T 3lws_A 186 YEKT---AAEIAGLFD--SIYISFYKGLGGIA--GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL----- 253 (357)
T ss_dssp HTCC---HHHHHTTSS--EEEEESSSTTCCSS--CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH-----
T ss_pred cCCC---hHHHHhcCC--EEEEeccccCCCCc--eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH-----
Confidence 1221 222211122 44789999993233 2999999999999887665444333 33344444444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCee-cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 354 EVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
+.+++ +.+.++++.+.+.|++++|+++ ..+..++|+|++++.... .+..++.+.|.++ ||.+.||..
T Consensus 254 -~~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-Gi~v~~g~~ 321 (357)
T 3lws_A 254 -RKDRM-GQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------DISPKLEQVQEET-GLGFVGYLV 321 (357)
T ss_dssp -HTTCH-HHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHH-CEESCSCCE
T ss_pred -HHHHH-HHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---------HHHHHHHHHHHhc-CeEEecccc
Confidence 33333 3457788899999999989988 356677779999875200 0256777777655 999999976
Q ss_pred CCCCC--cEEEEeec-----CHHHHHHHHHHHHHHH
Q 012124 433 FGDDT--CIRISYAA-----SLTTLQAAVERIKKGL 461 (470)
Q Consensus 433 f~~~~--~iRls~~~-----~~~~i~~~l~~l~~~l 461 (470)
|. ++ ++|++++. +.+++++++++|++++
T Consensus 322 ~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 322 DK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 65 44 89999872 7899999999998764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=254.42 Aligned_cols=317 Identities=15% Similarity=0.193 Sum_probs=238.0
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++|+|+. |++ |+.+++++.+.+.... |.+..+..++++.+++++. .+++++|+|+++++.+++.++
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~ 74 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSGW--ITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMAL 74 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHT
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcCC--cCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHc
Confidence 3577775 553 4677888888887643 4456788999999999973 248999999999999999999
Q ss_pred -cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 175 -CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 175 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+++||+|++++|+|+++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||.+.+ +++|.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---~~~i~ 147 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIY 147 (393)
T ss_dssp TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHH
T ss_pred CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---HHHHH
Confidence 89999999999999999999999999999999875 346799999999998888888765 48999987 88999
Q ss_pred HHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhhh
Q 012124 254 RIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 329 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~~ 329 (470)
++|+++ |++||+|++|+. +.+.+. + +. . .++++.||| |.+ +|.|+||++++ +++++.+......
T Consensus 148 ~l~~~~-~~~li~D~a~~~g~~~~~~---~---~~--~-~d~~~~S~~k~K~l--~~~~~g~~~~~~~~~~~~l~~~~~~ 215 (393)
T 1mdo_A 148 ALGERY-GIPVIEDAAHATGTSYKGR---H---IG--A-RGTAIFSFHAIKNI--TCAEGGIVVTDNPQFADKLRSLKFH 215 (393)
T ss_dssp HHHHHH-TCCBCEECTTCTTCEETTE---E---TT--S-SSEEEEECCTTSSS--CSSSCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHHHc-CCeEEEECccccCCeECCe---e---cC--C-CCeEEEeCCCCCcc--ccccceEEEeCCHHHHHHHHHHHhc
Confidence 999999 999999999996 333321 1 11 1 568999999 666 44589999997 7888888765432
Q ss_pred cc------------------------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-
Q 012124 330 FT------------------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE- 384 (470)
Q Consensus 330 ~~------------------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~- 384 (470)
.. ...+.+...++...++ .+++..++.++.++.+.+.|.+++ +++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~ 287 (393)
T 1mdo_A 216 GLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLP-FQPLSL 287 (393)
T ss_dssp TEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSS-CEECCC
T ss_pred CCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCC-cccccC
Confidence 11 1124443333333333 234555555667788888888874 66542
Q ss_pred C-----CceEEEeeeccC---ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------------CC-------
Q 012124 385 P-----QGAFYLFIDFST---YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------------GD------- 435 (470)
Q Consensus 385 ~-----~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------------~~------- 435 (470)
+ .+++++|+.++. .. +..++.+.|.++ ||.+.+|..+ ..
T Consensus 288 ~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T 1mdo_A 288 PSWEHIHAWHLFIIRVDEARCGI-----------TRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNS 355 (393)
T ss_dssp CSSCEECCCSCEEEECCHHHHSS-----------CHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHH
T ss_pred CCCCCCceeEEEEEEeccccccc-----------CHHHHHHHHHhC-CCCcccccCccccChhhhccCCccCChhHHHHH
Confidence 2 345668888873 21 678898888765 9999987643 11
Q ss_pred CCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 436 DTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 436 ~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
..++|+++.. ++++++.+++.|+++++.+
T Consensus 356 ~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 356 ERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred hCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 2379999985 9999999999999988754
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=264.80 Aligned_cols=343 Identities=15% Similarity=0.116 Sum_probs=236.7
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCC-cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~-~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|++.|.+ ++.. ++.+.+++.+++.+.. +... .+..++++.+++.+.+.++ .++++|++|+|+++++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~ 123 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECA 123 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHH
Confidence 3556789987763 3433 7899999999886532 2222 4556777888888876655 4678999999999999
Q ss_pred HHHHHHhcC--------CCCeEEEcCCCCCChHH-HHHHcCC------------EEEEecCcC--CCC-CccC-------
Q 012124 168 LQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRI--SEN-FLLD------- 216 (470)
Q Consensus 168 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~g~------------~~~~v~~~~--~~~-~~~d------- 216 (470)
+.+++.+.. +||+|++.+|+|+++.. .+...|. .+..++.+. ..+ .++|
T Consensus 124 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~ 203 (449)
T 3a8u_X 124 LTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIA 203 (449)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHH
Confidence 999988764 67999999999998754 4444431 233444321 111 1246
Q ss_pred -HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 217 -PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 217 -~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
++.|+++++ +++++|+++..+||||. ..+.+++++|.++|++| |++||+||+|.+|.+.+.. ..+..+.- .
T Consensus 204 ~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~~~-~ 280 (449)
T 3a8u_X 204 LADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH-NILLVFDEVITGFGRTGSM-FGADSFGV-T 280 (449)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SHHHHHTC-C
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh-CCEEEEeccccCccccCcc-hhhhhcCC-C
Confidence 999999886 34555554434678996 56799999999999999 9999999999876543321 11111111 1
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH---------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~---------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
.. +.||||.++ +| +|+||+++++++++.+... ....+++.+++.+.++.++|+.. ++ +...
T Consensus 281 ~d---i~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~--~~~~ 351 (449)
T 3a8u_X 281 PD---LMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL---QK--ENLV 351 (449)
T ss_dssp CS---EEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHH
T ss_pred CC---EEEEccccc-CCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH---Hh--cCHH
Confidence 12 238999998 68 9999999999998888753 12345677899998888888641 11 2355
Q ss_pred HHHHHHHHHHHHHhccCCCCee--cCCCceEEEeeeccCccCCcccCCCCCC--CHHHHHHHHHHcCCEEEECCCCCCCC
Q 012124 361 KAFRERRDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYYGSEAEGFGKIE--NSESLCRYLLDKAQVALVPGDAFGDD 436 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~L~~~~gI~v~pg~~f~~~ 436 (470)
++++++++++.+.|++++++.. ..+..|+++|++++.... .. +..++.+.|.++ ||.+.|+.
T Consensus 352 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~--------~~~~~~~~~~~~l~~~-Gv~v~~~g----- 417 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDG--------DAIVRPFEAGMALWKA-GFYVRFGG----- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTT--------BSSHHHHHHHHHHHHH-TEECEEET-----
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcc--------cccccHHHHHHHHHHC-CcEEecCC-----
Confidence 6667777777777766422221 112345678999875310 00 123688888766 99999962
Q ss_pred CcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 437 TCIRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 437 ~~iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
+++||++. .+++++++++++|+++++++
T Consensus 418 ~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 418 DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 78999965 49999999999999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=256.10 Aligned_cols=325 Identities=13% Similarity=0.137 Sum_probs=235.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC----CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
+.+.|..+.+. +.|+.+.+++.+++......+.. ..|..+..+.+.+.+.+.+|. ++++|++|+|+++++..+
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~~~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGA--RDGEVVVTDTTSINLFKV 104 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTC--CTTSEEECSCHHHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCC--CcccEEEeCChhHHHHHH
Confidence 45778877766 55778899999988753222211 112233444444444444564 578999999999999988
Q ss_pred HHHhc------CCCCeE-EEcCCCCCChHHHH----HHc--CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 171 VLAVC------SPGDEV-IIPAPFWVSYPEMA----RIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 171 ~~~l~------~~gd~V-lv~~p~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
+.+++ ++||+| +++.++|+.+...+ +.. |++++.++. ++.|++++++++++|++++|+
T Consensus 105 l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~~~v~~~~~~ 175 (416)
T 1qz9_A 105 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTEEEEEEESBC
T ss_pred HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCceEEEEeccc
Confidence 88876 899975 45556776555433 223 999998885 788999998899999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccccee-eEEEcC
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGP 316 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~ 316 (470)
||||.+++ +++|.++|++| |++||+|++|+. +.....+..+ +..+++.|++|.++ +|.++ ||++++
T Consensus 176 nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~~----~~d~~~~s~~K~l~-~g~~~~g~l~~~ 242 (416)
T 1qz9_A 176 YKTGYMHD---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQA----GADYAIGCTYKYLN-GGPGSQAFVWVS 242 (416)
T ss_dssp TTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEECSSSTTC-CCTTCCCEEEEC
T ss_pred cCcccccC---HHHHHHHHHHc-CCEEEEEccccc----cCcCCChhhc----CCCEEEecCcccCC-CCCCCeEEEEEC
Confidence 99999999 88999999999 999999999974 1111122222 34588999999985 78888 999999
Q ss_pred HHHHHHHHHHh-----------------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 317 KHFVAACNKIQ-----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 317 ~~~~~~l~~~~-----------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
+++++.+.... .....+.+...+.++.++++.. ..+++++++++++++++++.+.
T Consensus 243 ~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 320 (416)
T 1qz9_A 243 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF--AQTDMASLRRKSLALTDLFIEL 320 (416)
T ss_dssp TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHH
Confidence 88876554321 1122345666777666677642 1245778889999999999999
Q ss_pred hccC-C--CCeecCCC----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012124 374 FGEL-E--GVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 445 (470)
Q Consensus 374 L~~~-~--g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~- 445 (470)
|+++ + |+.+..+. .+.++|++++ +..++.+.|.++ ||.+.. ..++++|++++.
T Consensus 321 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~-gi~~~~----~~~~~lRis~~~~ 381 (416)
T 1qz9_A 321 VEQRCAAHELTLVTPREHAKRGSHVSFEHP--------------EGYAVIQALIDR-GVIGDY----REPRIMRFGFTPL 381 (416)
T ss_dssp HHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------THHHHHHHHHTT-TEECEE----ETTTEEEEECCTT
T ss_pred HHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------CHHHHHHHHHhC-CcEecc----CCCCeEEEeCccc
Confidence 9885 6 88877663 2445888876 456788888755 998753 236799999973
Q ss_pred --CHHHHHHHHHHHHHHHHhhC
Q 012124 446 --SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 446 --~~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++++++++|++++++..
T Consensus 382 ~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 382 YTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=259.50 Aligned_cols=342 Identities=13% Similarity=0.031 Sum_probs=239.9
Q ss_pred cCC--CeEEccCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 92 AGV--SVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 92 ~~~--~~i~l~~g~--~~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
+|+ .+|||..|. ..+. .++.+.+++.+++.+.. .+....+..+....+++.+.+..+ ...++|++++|++++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA 147 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVS 147 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS-CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHH
Confidence 567 789999883 3444 38899999999987632 221122334566666666666555 355799999999999
Q ss_pred HHHHHHHhcC-------CC-CeEEEcCCCCCChHHHHHHcC--------------CEEEEecCcCCCCCccCHHhHhhhc
Q 012124 167 ILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIAD--------------ATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 167 l~~~~~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
++.+++.+.. +| +.|++.+++|+++.......+ ..+..++...++....|++.|++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999998765 66 589999999998765554442 1233334322222224889999998
Q ss_pred c---CCceEEEEcC-CCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc
Q 012124 225 T---EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 299 (470)
Q Consensus 225 ~---~~~~~i~l~~-p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~ 299 (470)
+ +++++|++.. ++||+|..+ +.+.+++|.++|++| |+++|+||+|.+|.+.+.. ..+..+.- ... +.||
T Consensus 228 ~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~gr~G~~-~a~~~~~~-~pd---iit~ 301 (457)
T 3tfu_A 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY-EVLLIFDEIATGFGRTGAL-FAADHAGV-SPD---IMCV 301 (457)
T ss_dssp HHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHHTC-CCS---EEEE
T ss_pred HhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCccccch-hHhHhcCC-Cce---EEEE
Confidence 7 5778888877 899999866 788899999999999 9999999999987554431 11111111 122 2389
Q ss_pred Cccccccc-ceeeEEEcCHHHHHHHHHH-----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 300 SKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 300 sK~~~~~G-~r~G~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
||.++ .| +|+||+++++++++.+... ....+++.+++.+.++.++|+.... + ...+.++++.+++.+.
T Consensus 302 sK~l~-gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~-~----~~~~~~~~~~~~l~~~ 375 (457)
T 3tfu_A 302 GKALT-GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG-Q----DWRTRITELAAGLTAG 375 (457)
T ss_dssp CGGGG-TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT-S----CHHHHHHHHHHHHHHH
T ss_pred Chhhh-CCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh-h----HHHHHHHHHHHHHHHH
Confidence 99987 66 6999999999999988632 2335678899999999888873111 2 2344445555555565
Q ss_pred hcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHH
Q 012124 374 FGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLT 448 (470)
Q Consensus 374 L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~ 448 (470)
|++ ++++....+. |+++++++++.. +..++.+.|+++ ||.+.|. .+++|+++.. +++
T Consensus 376 L~~l~~~~~v~~vr~~-G~~~~i~l~~~~-----------~~~~~~~~l~~~-Gv~v~~~-----~~~lRi~p~~~~t~e 437 (457)
T 3tfu_A 376 LDTARALPAVTDVRVC-GAIGVIECDRPV-----------DLAVATPAALDR-GVWLRPF-----RNLVYAMPPYICTPA 437 (457)
T ss_dssp HGGGGGSTTEEEEEEC-SSCEEEEESSCC-----------CHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCHH
T ss_pred HHHHhcCCCeeeeecC-CeEEEEEECCcc-----------cHHHHHHHHHHC-CeEEEec-----CCEEEEECCCCCCHH
Confidence 554 3455444444 455788887542 578899998877 9999874 2689998654 999
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 012124 449 TLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~~~ 466 (470)
++++++++|+++++++..
T Consensus 438 ei~~~l~~L~~~l~~~~~ 455 (457)
T 3tfu_A 438 EITQITSAMVEVARLVGS 455 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999987753
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=266.58 Aligned_cols=379 Identities=10% Similarity=0.027 Sum_probs=253.9
Q ss_pred CCCCccccCCcccc---ccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCC
Q 012124 26 QIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG 102 (470)
Q Consensus 26 ~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g 102 (470)
.|+||++++||++| |+.+...+.+-.-| ..|.-+.. ..++..... ....+++.+.|..+
T Consensus 13 ~r~~a~~~~~~~~~~~~a~~l~~~d~l~~~r----~~f~~~~~------~~~~~~~~~--------~~~~~~~~iyld~~ 74 (465)
T 3e9k_A 13 VQRIAAELKCHPTDERVALHLDEEDKLRHFR----ECFYIPKI------QDLPPVDLS--------LVNKDENAIYFLGN 74 (465)
T ss_dssp HHHHHHHHTSCTTSHHHHHHHHHTCTTGGGG----GGEECCBG------GGSTTCCGG--------GSCTTCBCEECBTT
T ss_pred HHHHHHHcCCCCccHHHHHHhcccCcHHHHH----HhcCCCCc------ccccccccc--------cccCCCCeEEecCC
Confidence 79999999999999 76655555553322 22332210 000000000 00123456778776
Q ss_pred CCCCCChHHHHHHHHHHHH----cCCCCCC-CCcCc----HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 103 EPDFDTPVLIAEAGINAIR----EGFTRYT-PNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 103 ~~~~~~~~~~~~a~~~~~~----~~~~~y~-~~~g~----~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.... .|+.+.+++.+.+. .+...|. ...+. .++++.++++ .| +++++|++|+|+++++++++.+
T Consensus 75 ~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g--~~~~~v~~t~g~t~al~~~~~~ 147 (465)
T 3e9k_A 75 SLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDI----VG--ANEKEIALMNALTVNLHLLMLS 147 (465)
T ss_dssp TSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHH----HT--CCGGGEEECSCHHHHHHHHHHH
T ss_pred ccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHH----cC--CCcCCEEEECCHHHHHHHHHHH
Confidence 6542 24444444444332 2211111 11122 4456666655 45 4678999999999999999999
Q ss_pred hcCCCCe---EEEcCCCCCChHH----HHHHcCCEEE-----EecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCC
Q 012124 174 VCSPGDE---VIIPAPFWVSYPE----MARIADATPV-----ILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSN 238 (470)
Q Consensus 174 l~~~gd~---Vlv~~p~y~~~~~----~~~~~g~~~~-----~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~n 238 (470)
+++|||. |++++|+|++... .++..|++++ .+|.+ +++.+|++.|+++++ +++++|+++++||
T Consensus 148 ~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~--~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n 225 (465)
T 3e9k_A 148 FFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE--GEETLRIEDILEVIEKEGDSIAVILFSGVHF 225 (465)
T ss_dssp HCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT--TCSSCCHHHHHHHHHHHGGGEEEEEEESBCT
T ss_pred hccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC--CCCccCHHHHHHHHHhcCCCeEEEEEeCccc
Confidence 9877655 9999999998544 5667898752 23433 456689999999996 6789999999999
Q ss_pred CcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 239 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 239 PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
|||.+++ +++|.++|++| |++||+|++|+.. .....+.. .+..++++|++|.++....++|+++++++
T Consensus 226 ~tG~~~~---l~~i~~la~~~-g~~vi~D~a~~~g----~~~~~~~~----~~~D~~~~s~~K~l~~gp~~~g~l~~~~~ 293 (465)
T 3e9k_A 226 YTGQHFN---IPAITKAGQAK-GCYVGFDLAHAVG----NVELYLHD----WGVDFACWCSYKYLNAGAGGIAGAFIHEK 293 (465)
T ss_dssp TTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTT----TSCCCHHH----HTCCEEEECSSSTTCCCTTCCCEEEECGG
T ss_pred Ccceeec---HHHHHHHHHHc-CCEEEEEhhhhcC----CcCCchhh----cCCCEEEECcccccccCCCceEEEEEcHH
Confidence 9999999 78899999999 9999999998752 21222222 24458999999999312236899999888
Q ss_pred HHHHHHHHh-------------------------hhccCCCChHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHH
Q 012124 319 FVAACNKIQ-------------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVK 372 (470)
Q Consensus 319 ~~~~l~~~~-------------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ 372 (470)
+++.+.... .....+++.+...++.++++. ..++ +++++++++++++++.+
T Consensus 294 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~~l~~ 370 (465)
T 3e9k_A 294 HAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI---FKQATMKALRKKSVLLTGYLEY 370 (465)
T ss_dssp GTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHH
Confidence 765443110 001124566666666666654 1333 78889999999999999
Q ss_pred HhccC----------CCCeecCCC----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCc
Q 012124 373 SFGEL----------EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTC 438 (470)
Q Consensus 373 ~L~~~----------~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~ 438 (470)
.|+++ +|+++..|. .|.++|+.++. +..++.+.|.++ ||.+. +..+++
T Consensus 371 ~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-------------~~~~l~~~L~~~-Gi~v~----~~~~~~ 432 (465)
T 3e9k_A 371 LIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-------------PNKDVFQELEKR-GVVCD----KRNPNG 432 (465)
T ss_dssp HHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-------------TTCCHHHHHHTT-TEECE----EETTTE
T ss_pred HHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-------------CHHHHHHHHHHC-CEEEe----cCCCCE
Confidence 99874 688887765 25567878862 455788888765 99886 334689
Q ss_pred EEEEee-c--CHHHHHHHHHHHHHHHHhh
Q 012124 439 IRISYA-A--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 439 iRls~~-~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+|+++. . ++++++++++.|++++++.
T Consensus 433 iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 433 IRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp EEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 999983 3 8999999999999998754
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=257.31 Aligned_cols=346 Identities=14% Similarity=0.103 Sum_probs=240.8
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||.+| ...+.. ++.+.+++.+++.+....+ ...+..+++.++++++.+..+ ...++|++++|++++++
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 128 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS-PWYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVD 128 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc-cCccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHH
Confidence 56778999988 344443 8899999999987643333 225778899999999988665 35579999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCCE---------------EEEecCcCCCCCccC--------H
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADAT---------------PVILPTRISENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~~~~~~~~d--------~ 217 (470)
.+++.+.. .++.|++.+|+|+++.......+.. .+..|....+ +..| +
T Consensus 129 ~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 207 (476)
T 3i5t_A 129 SALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLV 207 (476)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHH
Confidence 99998763 3579999999999988665543322 2222221111 1122 7
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc-ccCCCCC
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWE 291 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~-~~~~~~~ 291 (470)
+.|++.++ +++++|++..++|++|. +++.+.+++|.++|++| |+++|.||+|.+|.+.+.. .... .+.- ..
T Consensus 208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~-gillI~DEv~~g~gr~G~~-~~~~~~~~v-~p 284 (476)
T 3i5t_A 208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH-DILYISDEVVTGFGRCGEW-FASEKVFGV-VP 284 (476)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHTTCC-CC
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccccCc-eeeecccCC-Cc
Confidence 88888885 45677777777888885 88999999999999999 9999999999987555432 1122 1111 11
Q ss_pred ceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
. +.+|||.++ .| +|+|++++++++++.+... ....+++.+++++.++.++|+.. ++ +.+.+.+
T Consensus 285 d---i~t~sK~l~-~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~---~~--~~~~~~~ 355 (476)
T 3i5t_A 285 D---IITFAKGVT-SGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELM---ER--EGIVDQA 355 (476)
T ss_dssp S---EEEECGGGG-TTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHH
T ss_pred c---hhhhhhhhc-CCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHH---Hh--HHHHHHH
Confidence 2 336899998 79 9999999999999888653 33356788999999999998742 11 2344445
Q ss_pred HHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCC----CHHHHHHHHHHcCCEEEECCCCCCCC
Q 012124 364 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE----NSESLCRYLLDKAQVALVPGDAFGDD 436 (470)
Q Consensus 364 ~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gI~v~pg~~f~~~ 436 (470)
+++.+++.+.|+. ++.+....+.+ .++++++.+.... ..... ....+++.|+++ ||.+.|. +
T Consensus 356 ~~~~~~l~~~L~~l~~~~~v~~v~~~G-~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---g-- 424 (476)
T 3i5t_A 356 REMADYFAAALASLRDLPGVAETRSVG-LVGCVQCLLDPTR----ADGTAEDKAFTLKIDERCFEL-GLIVRPL---G-- 424 (476)
T ss_dssp HHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCC---------CCHHHHHHHHHHHHHHHHT-TEECEEE---T--
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecC-ceeEEEEecCccc----cccccchhHHHHHHHHHHHHC-CCEEEec---C--
Confidence 5555555555544 44444444444 4467777542100 00000 145677888766 9999984 2
Q ss_pred CcEEEEe--ecCHHHHHHHHHHHHHHHHhh
Q 012124 437 TCIRISY--AASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 437 ~~iRls~--~~~~~~i~~~l~~l~~~l~~~ 464 (470)
+++||+. ..+++++++++++|+++++++
T Consensus 425 ~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 425 DLCVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7999994 459999999999999998765
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=257.30 Aligned_cols=349 Identities=17% Similarity=0.141 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHhcCC----CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CcCcHHHHHHHHHHHHHHcCCCC
Q 012124 80 VAITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~----~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~---~~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
.++......+...+. .++.|+ +.... ..+.+.+++.+.+. ..+.|.+ .+|..++++.+++++.+.+|.+.
T Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~-~~p~v~~~~~~~~~-~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~ 124 (474)
T 1wyu_B 48 LTLVRHYTGLSRRQVGVDTTFYPLG-SCTMK-YNPKLHEEAARLFA-DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA 124 (474)
T ss_dssp HHHHHHHHHHHTTCCCTTTSCCCBT-TTCCC-CCCHHHHHHHHTTS-SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHhCCCCcccCccccc-ccccc-CCHHHHHHHHHHHH-hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc
Confidence 355555666665554 356676 44332 23445555554421 2333433 57788999999999999888642
Q ss_pred CCCcEEEecChHHHHHHHHHHh----cCCCC-----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 153 TPDQILVSNGAKQSILQAVLAV----CSPGD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
.+++|+|+++++..++.++ .++|| +|++++|+|+.+...++..|++++.++++. ++.+|++.|+++
T Consensus 125 ---~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~ 199 (474)
T 1wyu_B 125 ---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRE 199 (474)
T ss_dssp ---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHH
T ss_pred ---eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHh
Confidence 4678899999998755554 35888 999999999999999999999999999863 456999999999
Q ss_pred ccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc
Q 012124 224 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 224 l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
+++++++|++++| ||||.+. +.+++|+++|++| |+++|+|++|..+.++. ..... .+..+++.|++|.+
T Consensus 200 i~~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~-g~~li~Dea~~~~~~g~---~~~~~----~g~di~~~s~~K~~ 268 (474)
T 1wyu_B 200 LGPHVAALMLTNP-NTLGLFE--RRILEISRLCKEA-GVQLYYDGANLNAIMGW---ARPGD----MGFDVVHLNLHKTF 268 (474)
T ss_dssp CSTTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHH-TCEEEEEGGGGGGTTTT---CCHHH----HTCSEEECCTTTTT
T ss_pred hCCCceEEEEECC-CCCcccC--CCHHHHHHHHHHc-CCEEEEeCchhhhhccC---CCccc----CCCcEEEEeCcccc
Confidence 9989999999987 6899883 2489999999999 99999999998765421 11111 24568899999999
Q ss_pred ccc-c---ceeeEEEcCHHHHHHHHH-H------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 304 AMT-G---WRLGYIAGPKHFVAACNK-I------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 304 ~~~-G---~r~G~~~~~~~~~~~l~~-~------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
+.| | .|+||+++++++++.+.. . .....++.+.+.+.++..++... +.++++++.
T Consensus 269 ~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~--g~~~l~~~~ 346 (474)
T 1wyu_B 269 TVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL--GLEGLKKAA 346 (474)
T ss_dssp CCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred ccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 766 4 599999999988766541 0 01112346777888888877631 256788889
Q ss_pred HHHHHHHHHHHHHhccCCCCeecCCCceEE-EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--CCC
Q 012124 361 KAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDT 437 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--~~~ 437 (470)
+.+.++++++.+.|+++ |+++..+...+. +|+.++... +..+++++|.++ ||.+ |+..|. ..+
T Consensus 347 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~ 412 (474)
T 1wyu_B 347 ALAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEGF-----------RALDLAKGLLEL-GFHP-PTVYFPLIVKE 412 (474)
T ss_dssp HHHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTTC-----------CHHHHHHHHHHT-TCCC-CEESCSTTSTT
T ss_pred HHHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCCC-----------CHHHHHHHHHHC-Cccc-cccccccccCC
Confidence 99999999999999987 877643332221 455664321 678899998876 8874 666564 367
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 438 CIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
++|++++. +++++++++++|++++++
T Consensus 413 ~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 413 ALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 99999997 899999999999998764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=258.16 Aligned_cols=351 Identities=14% Similarity=0.090 Sum_probs=238.1
Q ss_pred cCCCeEEccCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g--~~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+|||+.| ...+.. ++.+.+++.+++.+....|....+..+.+..+++.+.+..+ ...++|++++|++++++
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~ 130 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEAND 130 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 57788999988 344443 79999999999987554554445667888888888887665 35679999999999999
Q ss_pred HHHHHhcC--------CCCeEEEcCCCCCChHHHHHHcCC------------EEEEecCcC--C-CCCccC--------H
Q 012124 169 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRI--S-ENFLLD--------P 217 (470)
Q Consensus 169 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~--~-~~~~~d--------~ 217 (470)
.+++.+.. +++.|++.+|+|+++.......+. .+..++... . +++ .| +
T Consensus 131 ~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~ 209 (472)
T 3hmu_A 131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARA 209 (472)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHH
Confidence 99998864 468999999999998766554433 234444321 0 111 23 7
Q ss_pred HhHhhhcc----CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc
Q 012124 218 KVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 292 (470)
Q Consensus 218 ~~l~~~l~----~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (470)
+.|++.++ +++++|++..++|++|... +++.+++|.++|++| |+++|.||+|.+|...+.. .....+.- ...
T Consensus 210 ~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~-~a~~~~~v-~pd 286 (472)
T 3hmu_A 210 RELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY-DILLIADEVICGFGRTGNW-FGTQTMGI-RPH 286 (472)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHTC-CCS
T ss_pred HHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEccccCCcccCcc-chhHHhCC-CCc
Confidence 88888885 3556666666688888755 899999999999999 9999999999987554421 11111111 112
Q ss_pred eEEEeccCcccccccceeeEEEcCHHHHHHHHH--HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR-ERRDF 369 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 369 (470)
+.+|||.++..|+|+||+++++++++.+.. .....+++.++++|.++.++|+.... ++ +.+.++ ++.++
T Consensus 287 ---i~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~-~~----~~~~~~~~~~~~ 358 (472)
T 3hmu_A 287 ---IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE-EN----ILDHVRNVAAPY 358 (472)
T ss_dssp ---EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH-TT----HHHHHHHTHHHH
T ss_pred ---eeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH-hH----HHHHHHHHHHHH
Confidence 336899997344999999999999998832 12334677899999999998874110 22 333334 44444
Q ss_pred HHHHh---ccCCCCeecCCCceEEEeeeccCccCCcccCCCC--CCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee
Q 012124 370 LVKSF---GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA 444 (470)
Q Consensus 370 l~~~L---~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~ 444 (470)
+.+.| .+++.+....+.+.| +++++....... ..... ......+++.|+++ ||.+.|+. +++|++..
T Consensus 359 l~~~L~~l~~~~~v~~vr~~G~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~g-----~~iRi~p~ 430 (472)
T 3hmu_A 359 LKEKWEALTDHPLVGEAKIVGMM-ASIALTPNKASR-AKFASEPGTIGYICRERCFAN-NLIMRHVG-----DRMIISPP 430 (472)
T ss_dssp HHHHHHGGGGSTTEEEEEEETTE-EEEEECSCGGGT-CCBSSCTTHHHHHHHHHHHHT-TBCCEEET-----TEEEECCC
T ss_pred HHHHHHHHhcCCCeEEEEecCce-EEEEEecCcccc-ccccchhHHHHHHHHHHHHHC-CcEEEecC-----CEEEEECC
Confidence 44444 344545444444444 666664320000 00000 00156778888766 99999863 79999954
Q ss_pred --cCHHHHHHHHHHHHHHHHhh
Q 012124 445 --ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 445 --~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++++++++++|+++++++
T Consensus 431 ~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 431 LVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=257.69 Aligned_cols=347 Identities=12% Similarity=0.087 Sum_probs=231.5
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|++.|.. .+. .++.+.+++.+++.+....+.+.....+|++.+++++ + .+++|++|+|++++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gsea~~ 123 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERV----P---SIEIVRMVNSGTEATM 123 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhC----C---CCCEEEEeCChHHHHH
Confidence 5778999999864 344 3899999999998775433436666667777777664 3 4689999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCc------------cCHHhHhhhcc---CCceE
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFL------------LDPKVLESKLT---EKSRL 230 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~ 230 (470)
.+++.+.. +++.|++.+|+|+++...+.. .|.....++.....+.. -|++.|+++++ +++++
T Consensus 124 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 203 (429)
T 3k28_A 124 SALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIAC 203 (429)
T ss_dssp HHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEE
Confidence 99988754 668999999999876543322 22211111111111110 18899999886 34555
Q ss_pred EEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccce
Q 012124 231 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 231 i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
|++..++|++|... +.+++++|.++|++| |+++|+||+|.+| ..+.. .....+. ....+.||||.++ .|+|
T Consensus 204 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~~----~~~di~t~sK~~~-~G~~ 275 (429)
T 3k28_A 204 VIVEPVAGNMGVVPPQPGFLEGLREVTEQN-GALLIFDEVMTGF-RVAYN-CGQGYYG----VTPDLTCLGKVIG-GGLP 275 (429)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTT-TSSTT-HHHHHHT----CCCSEEEECGGGG-TTSC
T ss_pred EEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hHHHHhC----CCCceehhhhhhc-CCCC
Confidence 55555566666554 688899999999999 9999999999987 44321 1111111 1112457999998 7999
Q ss_pred eeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCee
Q 012124 310 LGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 382 (470)
Q Consensus 310 ~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 382 (470)
+||+++++++++.+.... ...+++.+++.|.++.++|+.. + ++..+.++++++++.+.|+++ +.+..
T Consensus 276 iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~---~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (429)
T 3k28_A 276 VGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQL---T---PESYVEFERKAEMLEAGLRKAAEKHGIPHH 349 (429)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTC---C---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 999999999988775432 2345678999999999999863 2 455666666666666666543 33333
Q ss_pred cCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
..+. |.++++.+.+....... .........++++.|+++ ||.+.|+. .+.+|+++..+++++++++++|+++
T Consensus 350 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~r~~~~~t~e~i~~~l~~l~~~ 423 (429)
T 3k28_A 350 INRA-GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFLPPSQ----FEGLFLSTVHSDADIEATIAAAEIA 423 (429)
T ss_dssp EEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSST----TSCBCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEee-ccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEEecCC----CCCEEEECCCCHHHHHHHHHHHHHH
Confidence 3333 44466665421000000 000000236778888765 99999863 3578998877999999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
+++++
T Consensus 424 l~~~~ 428 (429)
T 3k28_A 424 MSKLK 428 (429)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 98764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=258.38 Aligned_cols=337 Identities=13% Similarity=0.110 Sum_probs=218.2
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.... .| .+..++++++++++.+.++ .+++|++++|+++++.
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTL 127 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHH
Confidence 35578999998643 22 57899999999986632 33 2467899999999988764 5689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHHH-c----------CCE------EEEecCcCCCCCccCHHhHhhhcc---
Q 012124 169 QAVLA---VCSPGDEVIIPAPFWVSYPEMARI-A----------DAT------PVILPTRISENFLLDPKVLESKLT--- 225 (470)
Q Consensus 169 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~~-~----------g~~------~~~v~~~~~~~~~~d~~~l~~~l~--- 225 (470)
.+++. +.+ ++.|++.+|+|+++...+.. . |.. ++.++. .|++.|+++++
T Consensus 128 ~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 199 (453)
T 2cy8_A 128 LALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG 199 (453)
T ss_dssp HHHHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG
T ss_pred HHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC
Confidence 99987 655 46788888999977653322 1 221 233332 38999999886
Q ss_pred CCceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc
Q 012124 226 EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~ 304 (470)
+++++|+++..+||||..+ +.+++++|.++|++| |++||+||+|.++ +.+. ...+..+.- ... +.||||.++
T Consensus 200 ~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~-~~g~-~~~~~~~~~-~~d---i~s~sK~l~ 272 (453)
T 2cy8_A 200 SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY-GALFILDEVISGF-RVGN-HGMQALLDV-QPD---LTCLAKASA 272 (453)
T ss_dssp GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT-TCEEEEECTTTTT-TTCT-THHHHHHTC-CCS---EEEEEGGGG
T ss_pred CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecCcccc-ccCc-hhhhHHhCC-CCc---EEEEChhhh
Confidence 3556655544467899765 799999999999999 9999999999987 4332 111111111 111 448999998
Q ss_pred cccceeeEEEcCHHHHHHHHH-----HhhhccCCCChHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 305 MTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
+|+|+||+++++++++.+.. .....+++.+++.+.++.++|+. . .++..++++++++++.+.|+++
T Consensus 273 -~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------~~~~~~~~~~~~~~l~~~L~~~~ 345 (453)
T 2cy8_A 273 -GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------EDDVCAKINDLGQFAREAMNHLF 345 (453)
T ss_dssp -TTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998887654 12234567889999988888863 2 1223444455555555555442
Q ss_pred --CCCeecCCCceEEEeeeccC-----c--cCCcccCCC--CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecC
Q 012124 378 --EGVKMSEPQGAFYLFIDFST-----Y--YGSEAEGFG--KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAAS 446 (470)
Q Consensus 378 --~g~~~~~~~~g~~~~~~~~~-----~--~~~~~~~~~--~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~ 446 (470)
.++....+..|.++|+++++ . .. ...... ...+..++++.|+++ ||.+.|+ +.+|+++..+
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-Gv~v~~~------~~~~l~~~~t 417 (453)
T 2cy8_A 346 ARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSI-TRAEVARPDVKMIAAMRMALILE-GVDIGGR------GSVFLSAQHE 417 (453)
T ss_dssp HHTTCCEEEECCTTEEEEEETSCTTCCCCHHH-HTTCSCCCCHHHHHHHHHHHHHT-TEECBTT------TEEECCTTCC
T ss_pred hhCCCcEEEEEeeeEEEEEEeccccccccccc-cccccccccHHHHHHHHHHHHHC-CeEEeCC------CCEEeeccCC
Confidence 13322123345568888874 1 00 000000 000246788888765 9999653 2478876669
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012124 447 LTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~~ 465 (470)
++++++++++|++++++++
T Consensus 418 ~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 418 REHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=246.43 Aligned_cols=323 Identities=15% Similarity=0.215 Sum_probs=235.8
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.++++|+.+.|+.. + +.+++.+.+... .|.+..+..++++.+++++. .+++++++|+++++..++.+
T Consensus 6 ~~~~~l~~~~~~~~--~-~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~ 72 (374)
T 3uwc_A 6 VPYSYLERQFADIE--P-YLNDLREFIKTA--DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKM 72 (374)
T ss_dssp BCSCCHHHHTSSCH--H-HHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHH
T ss_pred ceeeccccCCCCch--H-HHHHHHHHHHcC--CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 35678888888763 3 888888887654 46688899999999999863 23889999999999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +++||+|++++|+|+++...++..|++++.++++ +++.+|++.+++++++++++|+ |+||||...+ +++|
T Consensus 73 ~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i 144 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPAL 144 (374)
T ss_dssp TTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred cCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHH
Confidence 9 9999999999999999999999999999999987 4567999999999988888777 8999999988 8889
Q ss_pred HHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
.++|+++ |+++|+|++|+.+. +++. .+..+ ..+++.||| |.++.+|. .|+++++ +++.+.+.....
T Consensus 145 ~~~~~~~-~~~li~D~~~~~g~~~~~~---~~~~~-----~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~ 214 (374)
T 3uwc_A 145 AKIAKKH-NLHIVEDACQTILGRINDK---FVGSW-----GQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRN 214 (374)
T ss_dssp HHHHHHT-TCEEEEECTTCTTCEETTE---ETTSS-----SSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHc-CCEEEEeCCCccCceeCCe---ecccc-----ccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998643 2211 11111 247778866 99973365 8888865 567777766543
Q ss_pred h------------ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-CeecC-CCceEEEeee
Q 012124 329 Q------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSE-PQGAFYLFID 394 (470)
Q Consensus 329 ~------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~-~~~g~~~~~~ 394 (470)
. .+...+.+.+.+.... .+.+++..++.++..+.+.+.|.++++ +.+.. +.++...|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~aa~~~~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (374)
T 3uwc_A 215 HGLINRDVCVEYGINCRMDTIQAVIANRL-------MNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHI 287 (374)
T ss_dssp TTEEETTEESSCCCBCBCCHHHHHHHHHH-------GGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSS
T ss_pred cCccccCccccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEE
Confidence 1 1111233332222222 223456667777888888899988866 66532 2333333322
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC----------------C-------CCcEEEEeec--CHHH
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG----------------D-------DTCIRISYAA--SLTT 449 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~----------------~-------~~~iRls~~~--~~~~ 449 (470)
++-.. .+..++.+.|.++ ||.+.++.... . .+.+|+++.. ++++
T Consensus 288 ~~~~~----------~~~~~l~~~L~~~-gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ed 356 (374)
T 3uwc_A 288 YVLRV----------KYRDQLFQYLKDN-GIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEE 356 (374)
T ss_dssp EEEEE----------TTHHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHH
T ss_pred EEEEc----------CCHHHHHHHHHHC-CCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHH
Confidence 21110 1567888888766 99999875210 0 1579999886 8999
Q ss_pred HHHHHHHHHHHHHhhC
Q 012124 450 LQAAVERIKKGLLTLR 465 (470)
Q Consensus 450 i~~~l~~l~~~l~~~~ 465 (470)
++++++.|++++++.+
T Consensus 357 i~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 357 INYIIKKVREFYLEKH 372 (374)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998654
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=250.67 Aligned_cols=335 Identities=13% Similarity=0.067 Sum_probs=231.7
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC-CC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.++|..+... .++.+++++.+.+.+.. .. |.......++++.+.+.+.+.+|. ++++|++++| ++++
T Consensus 26 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~~sG-t~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENF--TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC--KFANVQPNSG-SQAN 100 (417)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHH
T ss_pred cCeeeecccCC--CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC--CCcceEeccH-HHHH
Confidence 34778666544 37889999888774321 22 323334456777666677776774 5667888888 7999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH---HHHH--cCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPE---MARI--ADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~---~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
.+++.+++++||+|++++|+|+++.. .+.. .+..+++++++ +++.+|++.|+++++ +++++|++++++| |
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 99999999999999999999987654 3333 44556667665 456699999999997 6899998887776 7
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~ 319 (470)
..++ +++|.++|++| |++||+|++|. ++.+.+.....+. ...+++.||||.+ +|+|.||++++ +++
T Consensus 177 ~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~~------~~di~~~s~sK~l--~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 177 RVID---FAKFREIADEI-GAYLFADIAHIAGLVVAGEHPSPFP------YAHVVSSTTHKTL--RGPRGGIIMTNDEEL 244 (417)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCCTT------TCSEEEEESSTTT--CSCSCEEEEESCHHH
T ss_pred ccCC---HHHHHHHHHHc-CCEEEEECccchhhhhcccCCCccc------cceEEEeeCcccc--CCCCeeEEEECCHHH
Confidence 8888 88999999999 99999999964 4444332111111 3458999999987 67889999998 789
Q ss_pred HHHHHHHhhhccCC-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeeccC
Q 012124 320 VAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~ 397 (470)
++.+.........+ ++...+.++..++... ..+++++.+++++++++.+.+.|.+. |+.+.. +..+.++|+.++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3n0l_A 245 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLD 321 (417)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTT
T ss_pred HHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEccc
Confidence 88888765544333 3444444444444421 13566788888899999999999884 887754 2345567888753
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC------CCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD------DTCIRISYAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~------~~~iRls~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
.- .+...+.+.|. ++||.+.++..+.. .+.+|+++.. +++++++++++|++++++.
T Consensus 322 ~~----------~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 322 RE----------FSGKDADLALG-NAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp SS----------SCHHHHHHHHH-HTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CC----------CCHHHHHHHHH-HcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 20 15666666554 56999987653321 3569999863 5799999999999998753
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=254.73 Aligned_cols=343 Identities=14% Similarity=0.131 Sum_probs=228.3
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.+.. .|+. ..+++.++++++.+.++ .+++|++++|++++++
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~ 122 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT-SFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACM 122 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC-CcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 46678999998743 33 38999999999987643 2322 35778888888877665 5789999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHc-CC-------------------EEEEecCcCCCCCccCHHhHhhhccC
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------------TPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------------~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+++... ..++.|++.+|+|+++...+... |. .++.++. -|++.|++++++
T Consensus 123 ~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~ 195 (427)
T 3fq8_A 123 AVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALFAE 195 (427)
T ss_dssp HHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHHHHHh
Confidence 9985432 24578999999998755432221 11 1222332 188999998864
Q ss_pred ---CceEEEEcCCCCCcccCCC-HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 227 ---KSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 227 ---~~~~i~l~~p~nPtG~~~s-~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++++|+++.++|++|...+ .+++++|.++|++| |++||+||+|.+| +.+.. ....... ....+.||||.
T Consensus 196 ~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~~----~~~di~t~sK~ 268 (427)
T 3fq8_A 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVITGF-RIAYG-GVQEKFG----VTPDLTTLGKI 268 (427)
T ss_dssp STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBT-TTBTT-HHHHHTT----CCCSEEEECGG
T ss_pred CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hhhHhcC----CCCChhhhhhh
Confidence 5667777666778887655 66799999999999 9999999999987 43321 1111111 11125689999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
++ +|+|+||+++++++++.+.... ...+++.+++.+.++.++++.... ++..++.++..+..++.+.+.+.++ +
T Consensus 269 ~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~ 345 (427)
T 3fq8_A 269 IG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQET-G 345 (427)
T ss_dssp GG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred hh-CCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 98 8999999999999988776432 234556799999999988874322 3344444444444444444444333 3
Q ss_pred CeecCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHH
Q 012124 380 VKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERI 457 (470)
Q Consensus 380 ~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l 457 (470)
+....+..|+++|+.+++.....+. .........++++.|+++ ||.+.|+.. .++|+++..+++++++++++|
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v~~~~~----~r~~~~~~~t~e~i~~~l~~l 420 (427)
T 3fq8_A 346 HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLAAA 420 (427)
T ss_dssp CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEEecCCC----CCEEeeCcCCHHHHHHHHHHH
Confidence 3222334567788887642100000 000000135788888765 999998753 356666666999999999999
Q ss_pred HHHHHh
Q 012124 458 KKGLLT 463 (470)
Q Consensus 458 ~~~l~~ 463 (470)
++++++
T Consensus 421 ~~~l~~ 426 (427)
T 3fq8_A 421 RTVMSA 426 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=250.03 Aligned_cols=337 Identities=13% Similarity=0.098 Sum_probs=237.4
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCC------CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYT------PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~------~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
..+++++.+.|. |+.+++++.+.+.+. ...|+ ......++++.+.+.+.+.+|. +++.|++++| +++
T Consensus 24 ~~~~~~~~~~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a 97 (405)
T 2vi8_A 24 AKIELIASENFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQA 97 (405)
T ss_dssp HSEECCTTCCCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHH
T ss_pred cceeeccCcccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHH
Confidence 356666555443 888999998887532 22221 1122445665455566555664 3444555666 999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH-H--HHHcC--CEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCc
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPE-M--ARIAD--ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 240 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPt 240 (470)
+.+++.+++++||+|++++|+|+.+.. . +...| .+++.+++++ +++.+|++.|++++++ ++++|++ +++|+
T Consensus 98 ~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~- 174 (405)
T 2vi8_A 98 NMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVA-AAAAY- 174 (405)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-
T ss_pred HHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-
Confidence 999999999999999999999988753 1 12333 4888888753 3467999999999975 7888776 45553
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHF 319 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~ 319 (470)
|...+ +++|.++|++| |++||+|++|....+.... .. ..+. ...++++||||.++ .+| ||+++++++
T Consensus 175 ~~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~-~~-~~~~---~~di~~~s~sK~~~g~~g---G~~~~~~~~ 242 (405)
T 2vi8_A 175 PRIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGL-HP-NPVP---YAHFVTTTTHKTLRGPRG---GMILCQEQF 242 (405)
T ss_dssp CSCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTS-SC-CSTT---TCSEEEEESSSTTCCCSC---EEEEECHHH
T ss_pred CccCC---HHHHHHHHHHc-CCEEEEEccccccccccCc-CC-Cccc---cCCEEEEeccccCCCCCC---eEEEEcHHH
Confidence 45555 88999999999 9999999999853332211 11 1121 22388999999996 455 999999999
Q ss_pred HHHHHHHhhhccCCCChHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccC
Q 012124 320 VAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~~~~~~~q~a~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~ 397 (470)
++.+......+..+++.+.+.++ .++++.. ...++++++++++++++++.+.|+++ |+.+..+ ..++++|+.++.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 319 (405)
T 2vi8_A 243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP 319 (405)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccC
Confidence 99888766555545534444444 4566531 13578889999999999999999988 8888765 457788999874
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC----CC--CCCcEEEEeec------CHHHHHHHHHHHHHHHHhhC
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA----FG--DDTCIRISYAA------SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~----f~--~~~~iRls~~~------~~~~i~~~l~~l~~~l~~~~ 465 (470)
.- .+..++.+.|.+ +||.+.||.. ++ .++++|++++. +++++++++++|++++++.+
T Consensus 320 ~~----------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 320 QQ----------LTGKTAEKVLDE-VGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp GT----------CCHHHHHHHHHH-HTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CC----------CCHHHHHHHHHH-cCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 20 156778887755 5999999862 22 35689999984 79999999999999987664
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=263.81 Aligned_cols=367 Identities=15% Similarity=0.138 Sum_probs=238.3
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 143 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~------~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 143 (470)
++..+.++...........+...|.+.+++..|.+ +..+ +.+.+++.+++..+...|++..+..+|+++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~ 86 (467)
T 2oqx_A 8 RIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNI 86 (467)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHH
T ss_pred heeeecccccccHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCcceeccCchhHHHHHHHHHH
Confidence 34444444443344444455555555555555543 2222 6667777777665556788888899999999998
Q ss_pred HHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC-----C----CeEEEcCCCCCChHHHHHHcCCEEEEecC----cCC
Q 012124 144 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP-----G----DEVIIPAPFWVSYPEMARIADATPVILPT----RIS 210 (470)
Q Consensus 144 l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~----~~~ 210 (470)
+. .+++++|+|+++|+.++++++.++ | |+|++..+.|..+.......|+.++.... +.+
T Consensus 87 ~~--------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~ 158 (467)
T 2oqx_A 87 FG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTG 158 (467)
T ss_dssp HC--------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTT
T ss_pred hC--------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCC
Confidence 72 268999999999999999999888 8 99888744444445566677887765421 111
Q ss_pred ----CCCccCHHhHhhhcc----CCceEEEEcCCCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccc---------
Q 012124 211 ----ENFLLDPKVLESKLT----EKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--------- 272 (470)
Q Consensus 211 ----~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~--------- 272 (470)
.++.+|++.|+++++ +++++|++++||||| |.+++.+++++|+++|++| |++||+|+++..
T Consensus 159 ~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~D~a~~~e~~~~~~~~ 237 (467)
T 2oqx_A 159 VRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQR 237 (467)
T ss_dssp SCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHH
T ss_pred CCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhhhhcccc
Confidence 234589999999997 378999999999998 8999999999999999999 999999965432
Q ss_pred -cccCCCCcccccc-cCCCCCceEEEeccCcccccc-cceeeEEEcCHH-HHHHHHHHhhh---c----cCCC-ChHHHH
Q 012124 273 -IIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMT-GWRLGYIAGPKH-FVAACNKIQSQ---F----TSGA-SSISQK 340 (470)
Q Consensus 273 -~~~~~~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~-G~r~G~~~~~~~-~~~~l~~~~~~---~----~~~~-~~~~q~ 340 (470)
..+.+.....+.. .....+ +++.|+||.++++ | ||++++++ +++.+.+.+.. . ..+. +.....
T Consensus 238 ~~~~~g~~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (467)
T 2oqx_A 238 EAEYKDWTIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAME 312 (467)
T ss_dssp CGGGTTSCHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHH
T ss_pred cccccCccHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHH
Confidence 1232221111110 001112 4578999999866 4 78888776 55544443322 1 1111 222222
Q ss_pred HHHHHHhcCCCChHHH-HHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccC---ccCCcccCCCCCCCHHHHH
Q 012124 341 AGVAALGLGYAGGEVV-SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST---YYGSEAEGFGKIENSESLC 416 (470)
Q Consensus 341 a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 416 (470)
++...+.. ++ ++..+.+.++++.+.+.|+++ |+.+. +.+++++|++++. .... .. .+...++
T Consensus 313 al~~~l~~------~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~ 378 (467)
T 2oqx_A 313 RLAVGLYD------GMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIPA--DQ----FPAQALA 378 (467)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSCG--GG----CHHHHHH
T ss_pred HHHHhhHh------hhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCCc--cc----ccHHHHH
Confidence 22222221 11 123344567788888999887 88777 7778889998853 1100 00 0145568
Q ss_pred HHHHHcCCEEEECCCCC--C-----------CCCcEEEEee---cCHHHHHHHHHHHHHHHHhhC
Q 012124 417 RYLLDKAQVALVPGDAF--G-----------DDTCIRISYA---ASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 417 ~~L~~~~gI~v~pg~~f--~-----------~~~~iRls~~---~~~~~i~~~l~~l~~~l~~~~ 465 (470)
+.|+++.||.+.|+..| + ..+++|++++ .+++++++++++|++++++.+
T Consensus 379 ~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 379 CELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 88744559999985432 1 1379999998 689999999999999998654
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=242.18 Aligned_cols=312 Identities=16% Similarity=0.154 Sum_probs=231.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh---cCCCCeEEE
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVII 183 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l---~~~gd~Vlv 183 (470)
++|+.+++++.+.+... .|.+.....++++.+++++ |. +++++|+|+++++.+++.++ +++||+|++
T Consensus 10 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~----~~----~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~ 79 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSK--QLTQGKRSLLFEEALCEFL----GV----KHALVFNSATSALLTLYRNFSEFSADRNEIIT 79 (375)
T ss_dssp CCCHHHHHHHHHHHTSS--CCSSSHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHcC--cccCChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEE
Confidence 35788999999988653 2445567788999999987 32 28999999999999999999 899999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEE
Q 012124 184 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 263 (470)
Q Consensus 184 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~ 263 (470)
++|+|+++...++..|++++.++++.++ .+|++.|++++++++++|+++++ ||...+ +++|.++|++| |++
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~-~~~ 150 (375)
T 2fnu_A 80 TPISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKH-SLS 150 (375)
T ss_dssp CSSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHH-TCE
T ss_pred CCCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHc-CCE
Confidence 9999999999999999999999997543 58999999999888998887765 999998 78999999999 999
Q ss_pred EEEeccccccccCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEc-C-HHHHHHHHHHhhhcc--------
Q 012124 264 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-P-KHFVAACNKIQSQFT-------- 331 (470)
Q Consensus 264 iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~-~-~~~~~~l~~~~~~~~-------- 331 (470)
||+|++|+.+.... ...+.. .+ .+++.||| |.++ +| +|++++ + +++++.+........
T Consensus 151 li~D~a~~~~~~~~-----~~~~~~-~~-~i~~~s~s~~K~~~-~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2fnu_A 151 FLSDSSHALGSEYQ-----NKKVGG-FA-LASVFSFHAIKPIT-TA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEG 220 (375)
T ss_dssp EEEECTTCTTCEET-----TEETTS-SS-SEEEEECCTTSSSC-CS--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCE
T ss_pred EEEECccccCCeEC-----Ceeccc-cC-CeEEEeCCCCCCcc-cc--CceEEEeCCHHHHHHHHHHHhcCCcccccccc
Confidence 99999998643221 011221 12 48888998 9997 46 788877 4 778888876543211
Q ss_pred --------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC----Cc-eEEEeeeccCc
Q 012124 332 --------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG-AFYLFIDFSTY 398 (470)
Q Consensus 332 --------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~-g~~~~~~~~~~ 398 (470)
+..+.+...++... .+++++..++++++++++.+.|++++|+.+..+ .. ++++|+.++..
T Consensus 221 ~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2fnu_A 221 EVKSIGHNFRLNEIQSALGLSQ-------LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK 293 (375)
T ss_dssp EESSCCCBCCCCHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred ccccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc
Confidence 12333332222221 234567778888899999999999888877654 12 34457777632
Q ss_pred cCCcccCCCCCC-CHHHHHHHHHHcCCEEEECCCC-------CC-------C-------CCcEEEEeec--CHHHHHHHH
Q 012124 399 YGSEAEGFGKIE-NSESLCRYLLDKAQVALVPGDA-------FG-------D-------DTCIRISYAA--SLTTLQAAV 454 (470)
Q Consensus 399 ~~~~~~~~~~~~-~~~~l~~~L~~~~gI~v~pg~~-------f~-------~-------~~~iRls~~~--~~~~i~~~l 454 (470)
. . +..++.+.|.++ ||.+..+.. |+ . .+++||+++. +++++++++
T Consensus 294 ~----------~~~~~~l~~~L~~~-gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~ 362 (375)
T 2fnu_A 294 F----------FTCKKLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIA 362 (375)
T ss_dssp G----------GGGHHHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred c----------cchHHHHHHHHHHC-CCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHH
Confidence 0 0 356788888655 999883211 11 1 1579999986 899999999
Q ss_pred HHHHHHHHhhC
Q 012124 455 ERIKKGLLTLR 465 (470)
Q Consensus 455 ~~l~~~l~~~~ 465 (470)
++|++++++++
T Consensus 363 ~~l~~~~~~~~ 373 (375)
T 2fnu_A 363 HSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=248.69 Aligned_cols=323 Identities=12% Similarity=0.042 Sum_probs=224.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAV 171 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~~ 171 (470)
..++++.|.. ++|+.+++++.+.... +...+.+ ...++.+.+.+.+.+.+|.+ ++++|++ |+|+++++.+++
T Consensus 40 ~~~~~~~~~~--~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 40 RDGRFGSGPS--KVRLEQLQTLTTTAAALFGTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAA 114 (398)
T ss_dssp SSCBCCSSSC--CCCHHHHHGGGTTTTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHH
T ss_pred CCccccCCCC--CCCHHHHHHHhhcCCCccCcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHH
Confidence 3466665432 4577888887663111 1112212 23345666667776667864 4579998 999999999999
Q ss_pred HHhcCCCCeEEEcCCCCCC-hHHHHHHc--CCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVS-YPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
.+++++| .+.+..+.|.. ....+... |++++.++++ +++.++. .+++++++|++++|+||||.+++.++
T Consensus 115 ~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 115 FGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp HHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred HHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcceecchHH
Confidence 9999887 22232222211 12234555 8888888886 2333332 25678999999999999999999665
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ- 327 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~- 327 (470)
+.++ + |++||+|++|+.+... ..+. +..+++.|+||.++.+| ++||+++++++++.+.+..
T Consensus 187 i~~~------~-~~~vivD~a~~~~~~~----~~~~------~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~ 248 (398)
T 2fyf_A 187 PEGS------D-DALVVIDATSGAGGLP----VDIA------ETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAA 248 (398)
T ss_dssp CTTC------C--CEEEEECTTTTTTSC----CCGG------GCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHH
T ss_pred hhhh------c-CCeEEEEeccccCCcc----cCcc------cCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcccc
Confidence 5543 8 9999999999864321 1111 24488999999998664 6999999999988775431
Q ss_pred --------------------hhccCCCChHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHHHHHhccCCCCeecC-
Q 012124 328 --------------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSE- 384 (470)
Q Consensus 328 --------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~g~~~~~- 384 (470)
.....+++...+.++..+++. ..+. +++++++++++++++.+.|++++|+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 325 (398)
T 2fyf_A 249 TGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVT 325 (398)
T ss_dssp TTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCC
T ss_pred cCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccC
Confidence 112234566667777777764 1333 78889999999999999999888888763
Q ss_pred -C--CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 385 -P--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 385 -~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
| .+++++|+++|+.. +..++.+.|.++ ||.+.+|.....++++|++++. +++++++++++|++
T Consensus 326 ~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~-gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 326 DPGLRSQVVGTIDFVDDV-----------DAGTVAKILRAN-GIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp SGGGBCSSEEEEEECTTS-----------CHHHHHHHHHHT-TCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ChhhcCCcEEEEECCCCC-----------CHHHHHHHHHHC-CcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4 35657899987542 678899988877 9999987432235789999995 89999999999999
Q ss_pred HHHh
Q 012124 460 GLLT 463 (470)
Q Consensus 460 ~l~~ 463 (470)
++++
T Consensus 394 ~l~~ 397 (398)
T 2fyf_A 394 VVER 397 (398)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8875
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=255.23 Aligned_cols=340 Identities=16% Similarity=0.160 Sum_probs=228.3
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+. +. .++.+.+++.+++.+.. .| .+..++++.+++.+.+..+ ..++|++++|+++++.
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~ 126 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW-LY---GAPGEAEVLLAEKILGYVK---RGGMIRFVNSGTEATM 126 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CC---SSCCHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 45678999988642 33 47899999999987642 22 1234566667777766553 4689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHH-H-------------cCC------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLA---VCSPGDEVIIPAPFWVSYPEMAR-I-------------ADA------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++. +. +++.|++.+|+|+++...+. . .|. +++.++. .|++.|+++++
T Consensus 127 ~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 198 (434)
T 2epj_A 127 TAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFA 198 (434)
T ss_dssp HHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHH
Confidence 99987 44 56788888899998654221 1 232 2445553 38899999886
Q ss_pred C---CceEEEEcCCCCCcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCc
Q 012124 226 E---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301 (470)
Q Consensus 226 ~---~~~~i~l~~p~nPtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK 301 (470)
+ ++++|+++..+||||.++ +.+++++|.++|++| |++||+||+|.++.+ +. ...+..+.- ...+.||||
T Consensus 199 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~~~-g~-~~~~~~~~~----~~di~s~sK 271 (434)
T 2epj_A 199 EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES-GALLILDEVVTGFRL-GL-EGAQGYFNI----EGDIIVLGK 271 (434)
T ss_dssp HHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH-TCEEEEEETTTTTTS-ST-THHHHHHTC----CCSEEEEEG
T ss_pred hCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEcchhceeC-Cc-chhhHHhCC----CCCeeeecc
Confidence 3 556655554567899866 799999999999999 999999999998733 22 111111111 111458999
Q ss_pred ccccccceeeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 012124 302 AFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL- 377 (470)
Q Consensus 302 ~~~~~G~r~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 377 (470)
.++ +|+|+||+++++++++.+.... ...+++.+++.+.++.++|+.. ++ +++.++++++++++.+.|+++
T Consensus 272 ~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~ 345 (434)
T 2epj_A 272 IIG-GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL---EE--EPVYSVSREAAKALEEAASEVL 345 (434)
T ss_dssp GGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---HH--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-CCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 998 6999999999999887765421 2245578899998888887641 11 334555666666666666553
Q ss_pred --CCCeecCCCceEEEeeeccCc-cCC-cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHH
Q 012124 378 --EGVKMSEPQGAFYLFIDFSTY-YGS-EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAA 453 (470)
Q Consensus 378 --~g~~~~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~ 453 (470)
.++....+..|.++|+.+++. ... .........+..++++.|+++ ||.+.||.. .++|+++..++++++++
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~----~~~~~~~~~t~e~i~~~ 420 (434)
T 2epj_A 346 DRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFIAPSNL----EAVFTGLPHQGEALEIA 420 (434)
T ss_dssp HHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCSHHHHHHH
T ss_pred hhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEEeccCC----CcEEEeccCCHHHHHHH
Confidence 133222223455688888641 000 000000000246788888765 999999752 35788876799999999
Q ss_pred HHHHHHHHHhh
Q 012124 454 VERIKKGLLTL 464 (470)
Q Consensus 454 l~~l~~~l~~~ 464 (470)
+++|+++++++
T Consensus 421 l~~l~~~l~~~ 431 (434)
T 2epj_A 421 VEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=249.53 Aligned_cols=333 Identities=15% Similarity=0.071 Sum_probs=221.3
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
+.+..+... +++.+.+++.+++.+.. ..|........+.+...+++.+.+|. ++++|++++| ++++..
T Consensus 33 ~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~v~~~sG-s~a~~~ 107 (420)
T 3gbx_A 33 IELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--DYANVQPHSG-SQANFA 107 (420)
T ss_dssp EECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHHHH
T ss_pred eeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC--CCceeEecCc-HHHHHH
Confidence 555544332 58889999988874422 12222233345555555667666674 5667767776 779999
Q ss_pred HHHHhcCCCCeEEEcCCCCCChH---HHHHH--cCCEEEEecCcCCCCCccCHHhHhhhccC-CceEEEEcCCCCCcccC
Q 012124 170 AVLAVCSPGDEVIIPAPFWVSYP---EMARI--ADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSV 243 (470)
Q Consensus 170 ~~~~l~~~gd~Vlv~~p~y~~~~---~~~~~--~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~i~l~~p~nPtG~~ 243 (470)
++.+++++||+|++++|+|+.+. ..... .+...++++.+ .++.+|++.|++++++ ++++|++++|+||+ .
T Consensus 108 a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~--~ 183 (420)
T 3gbx_A 108 VYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG--V 183 (420)
T ss_dssp HHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS--C
T ss_pred HHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCccCC--c
Confidence 99999999999999999998743 22222 34555666665 4556899999999976 68999998899874 5
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH---HHH
Q 012124 244 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---HFV 320 (470)
Q Consensus 244 ~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~---~~~ 320 (470)
.+ +++|.++|++| |++||+||+|....+.....+.. + ....+++.|+||.++ |.+.||+++++ ++.
T Consensus 184 ~~---l~~l~~l~~~~-~~~li~De~~~~~~~~~~~~~~~--~---~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~ 252 (420)
T 3gbx_A 184 VD---WAKMREIADSI-GAYLFVDMAHVAGLIAAGVYPNP--V---PHAHVVTTTTHKTLA--GPRGGLILAKGGDEELY 252 (420)
T ss_dssp CC---HHHHHHHHHHT-TCEEEEECTTTHHHHHTTSSCCS--T---TTSSEEEEESSGGGC--SCSCEEEEESSCCHHHH
T ss_pred cC---HHHHHHHHHHc-CCEEEEECCcchhceecccCCcc--c---ccCCEEEeecccCCC--CCCceEEEEcCCcHHHH
Confidence 56 88999999999 99999999976433222111111 1 124589999999984 55569999987 777
Q ss_pred HHHHHHhhhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccCc
Q 012124 321 AACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTY 398 (470)
Q Consensus 321 ~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~ 398 (470)
+.+......... +++...+.++..++... ..+++++++++++++++.+.+.|.+. |+.+..+ ..+.++|+.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 329 (420)
T 3gbx_A 253 KKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDK 329 (420)
T ss_dssp HHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCC
Confidence 777665433322 33444444444444331 25677888999999999999999885 8887653 4566688887642
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEEC-------CCCCCCCCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVP-------GDAFGDDTCIRISYAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p-------g~~f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
. .+...+.+.| +++||.+.| |..|+ ++.+|+++.. ++++++++++.|++++++.
T Consensus 330 ~----------~~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~-~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 330 N----------LTGKEADAAL-GRANITVNKNSVPNDPKSPFV-TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp T----------CCHHHHHHHH-HHTTEECEEECCTTCSSCTTT-CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred C----------CCHHHHHHHH-HHCCcEeccccCCCCccccCC-CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 1 1456666665 456999998 44443 3459999873 4789999999999988754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=252.53 Aligned_cols=338 Identities=15% Similarity=0.131 Sum_probs=243.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCC-C------CCCCcCcHHHHHHHHHHHHHHcCCCCCC--CcEEEecChH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R------YTPNAGTLELRSAICHKLKEENGLSYTP--DQILVSNGAK 164 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~-~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~--~~i~it~g~~ 164 (470)
++.|+|..+.+ .+++.+++++.+.+.+... + |+...+..++++.+.+++.+.+|.+.+. .+|++++|+
T Consensus 44 ~~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-
T ss_pred hcCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-
Confidence 35689987765 3588899999888765321 2 3333455788889999999989965322 348888888
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEE
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLIL 233 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l 233 (470)
+++..++.++++|||+|++.+|.|.++... +...| .+.+++++++ +++.+|+|.|+++++ +++|+|++
T Consensus 121 ~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~-~~~~iD~d~le~~i~~~~tklIi~ 199 (483)
T 1rv3_A 121 PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNP-DTGYIDYDRLEENARLFHPKLIIA 199 (483)
T ss_dssp HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcccc-CCCcCCHHHHHHHHhhcCCcEEEE
Confidence 888888899999999999999998877532 23344 5666666654 346799999999997 78999998
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+++||+ .+++ +++|.++|+++ |++||+|++|. ++.+.+....++. ...+++.|++|++ .|+|.||
T Consensus 200 -~~sn~~-~~~d---l~~i~~ia~~~-g~~livD~ah~~g~~~~~~~~~p~~------~~div~~s~~K~l--~GprgG~ 265 (483)
T 1rv3_A 200 -GTSCYS-RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPFE------HCHVVTTTTHKTL--RGCRAGM 265 (483)
T ss_dssp -CCSSCC-SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGGG------TCSEEEEESSGGG--CCCSCEE
T ss_pred -eCCcCC-CcCC---HHHHHHHHHHc-CCEEEEEccchhcccccCCCCCCCC------CCcEEEecCcccC--CCCCceE
Confidence 889988 8888 88999999999 99999999976 3333322112221 2348899999987 6788999
Q ss_pred EEcCHH---------------HHHHHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 313 IAGPKH---------------FVAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 313 ~~~~~~---------------~~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++++++ +.+.+....... ..+++...+.++..++... ...++++..+++.++++++.+.|.+
T Consensus 266 i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~ 343 (483)
T 1rv3_A 266 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSAALVE 343 (483)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHh
Confidence 998874 344444332222 2234444445555556532 1346788889999999999999998
Q ss_pred CCCCeecCCC-ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCCC-CCCcEEEEeec--C--
Q 012124 377 LEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAFG-DDTCIRISYAA--S-- 446 (470)
Q Consensus 377 ~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f~-~~~~iRls~~~--~-- 446 (470)
+ |+++..+. .++++|++++.. + .+..++.+.| ++.||.+. ||..+. .++++||+++. +
T Consensus 344 ~-g~~~~~~~~~~~~~~v~~~~~-g---------~~~~~~~~~L-~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g 411 (483)
T 1rv3_A 344 L-GYKIVTGGSDNHLILVDLRSK-G---------TDGGRAEKVL-EACSIACNKNTCPGDKSALRPSGLRLGTPALTSRG 411 (483)
T ss_dssp T-TCEEGGGSCSSSEEEEEGGGG-T---------CCHHHHHHHH-HHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTT
T ss_pred c-CCEeccCCCCCceEEEeccCC-C---------CCHHHHHHHH-HhCCcEEecCCCCCCCcCCCCceEEeecCCcccCC
Confidence 8 88887653 346678888532 0 1566776655 55699999 886321 35799999986 5
Q ss_pred --HHHHHHHHHHHHHHHHh
Q 012124 447 --LTTLQAAVERIKKGLLT 463 (470)
Q Consensus 447 --~~~i~~~l~~l~~~l~~ 463 (470)
+++++++++.|+++++.
T Consensus 412 ~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 412 LLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 89999999999998875
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=254.66 Aligned_cols=337 Identities=10% Similarity=0.096 Sum_probs=233.7
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHH-H-HHHH---HHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIA-E-AGIN---AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~-~-a~~~---~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.++||+.|.+ ++.. ++.+. + ++.+ ++.... .|+ ..+..+.+..+++.+.+..+ ...+++|++|+|+
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~~~-~~~~~~~~~~la~~la~~~~-~~~~~~v~~~~~g 128 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-PSN-SDVYSVAMARFVETFARVLG-DPALPHLFFVEGG 128 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-CCT-TTCCCHHHHHHHHHHHHHHC-CTTCCEEEEESSH
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-CCC-cccCCHHHHHHHHHHHHhcC-CCCCCEEEEeCch
Confidence 4567899977763 3443 78899 8 9999 776542 343 23444566666666666665 2467899999999
Q ss_pred HHHHHHHHHHhc---C----------C-CCeEEEcCCCCCChHHHHHH-cC--------C-----EEEEecCcCCCCC--
Q 012124 164 KQSILQAVLAVC---S----------P-GDEVIIPAPFWVSYPEMARI-AD--------A-----TPVILPTRISENF-- 213 (470)
Q Consensus 164 ~~al~~~~~~l~---~----------~-gd~Vlv~~p~y~~~~~~~~~-~g--------~-----~~~~v~~~~~~~~-- 213 (470)
+++++.+++.+. . + ||+|++.+|+|+++...... .| . +++.+|.+..+..
T Consensus 129 seA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 208 (449)
T 2cjg_A 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEP 208 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcc
Confidence 999999987543 2 2 89999999999986543221 22 2 5566665421011
Q ss_pred ------ccCHHhHhhhcc---CCceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc
Q 012124 214 ------LLDPKVLESKLT---EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 214 ------~~d~~~l~~~l~---~~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
..+++.|+++++ +++++|+++..+|||| ..++.+++++|.++|++| |+++|+||+|.++.+.+.. ..+
T Consensus 209 ~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~-~~~ 286 (449)
T 2cjg_A 209 AMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF-DALLIFDEVQTGCGLTGTA-WAY 286 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-STH
T ss_pred ccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccccCCCccCcc-eee
Confidence 245667888884 5677766665589999 599999999999999999 9999999999987655431 111
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH-----HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~-----~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
..+.- ... +.||||.+ |+||+++++++++.+. ......+++.+++.|.++.++|+.. .+ +.
T Consensus 287 ~~~~~-~~d---i~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~---~~--~~ 352 (449)
T 2cjg_A 287 QQLDV-APD---IVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI---EA--EG 352 (449)
T ss_dssp HHHTC-CCS---EEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH---HH--HT
T ss_pred cccCC-Cce---EEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH---Hh--cc
Confidence 11111 112 34799987 7999999998887522 2233356778999999999888741 11 34
Q ss_pred HHHHHHHHHHHHHHHhcc----CCC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC
Q 012124 359 MVKAFRERRDFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF 433 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~----~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f 433 (470)
+.++++++++++.+.|++ ++. +....+.+.| ++++++... +..++++.|+++ ||.+.|+.
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~-~~~~~~~~~-----------~~~~~~~~l~~~-Gv~v~~~g-- 417 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM-CAFSLPTTA-----------DRDELIRQLWQR-AVIVLPAG-- 417 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTE-EEEECSSHH-----------HHHHHHHHHHHT-TEECEEET--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEE-EEEEECChH-----------HHHHHHHHHHHC-CeEEecCC--
Confidence 556667777777777764 344 5444455444 667886421 456788888865 99999963
Q ss_pred CCCCcEEEEee--cCHHHHHHHHHHHHHHHHhh
Q 012124 434 GDDTCIRISYA--ASLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 434 ~~~~~iRls~~--~~~~~i~~~l~~l~~~l~~~ 464 (470)
.+++|++++ .+++++++++++|+++++++
T Consensus 418 --~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 418 --ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 579999765 49999999999999998764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=242.12 Aligned_cols=319 Identities=16% Similarity=0.221 Sum_probs=228.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
+++++..+.|.+ ++.+.+++.+.+..+ .|. +..+..+||+++++++. .+++++++|+++++.+++.+
T Consensus 23 ~~~~l~~~~p~~--~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~al~~~l~~ 90 (391)
T 3dr4_A 23 DLPRISVAAPRL--DGNERDYVLECMDTT--WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTALHLALVA 90 (391)
T ss_dssp -----CCCCCCC--CSSHHHHHHHHHHHT--CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHH
T ss_pred CCceeccCCCCC--CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 568888888865 467778888877654 354 67889999999999973 23788899999999999999
Q ss_pred h-cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+ +++||+|++++|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ ++||||...+ +++|
T Consensus 91 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~---~~~i 163 (391)
T 3dr4_A 91 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPR-TFNLDAAKLEALITPRTKAIM---PVHLYGQICD---MDPI 163 (391)
T ss_dssp HTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCcc-ccCcCHHHHHHhcCCCceEEE---EECCCCChhh---HHHH
Confidence 9 899999999999999999999999999999999753 467999999999998888877 5689999988 8889
Q ss_pred HHHHHhCCCEEEEEeccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccccceeeEEEcC-HHHHHHHHHHhh
Q 012124 253 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQS 328 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~G~r~G~~~~~-~~~~~~l~~~~~ 328 (470)
.++|+++ |++||+|++|+... +.+. ....+. .+.+.||| |.++ |.+.||++++ +++.+.+.....
T Consensus 164 ~~l~~~~-~~~li~D~a~~~g~~~~~~---~~~~~~-----di~~~S~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~ 232 (391)
T 3dr4_A 164 LEVARRH-NLLVIEDAAEAVGATYRGK---KSGSLG-----DCATFSFFGNAIIT--TGEGGMITTNDDDLAAKMRLLRG 232 (391)
T ss_dssp HHHHHHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECBTTSSSC--CBSCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHc-CCEEEEECcccccceECCe---eecccC-----CEEEEECCCCCcCC--cCCeEEEEECCHHHHHHHHHHHh
Confidence 9999999 99999999998532 2221 111111 26777776 7764 4578998876 557777766543
Q ss_pred hcc--------------CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC------Cce
Q 012124 329 QFT--------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP------QGA 388 (470)
Q Consensus 329 ~~~--------------~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~~g 388 (470)
... +..+.+.. +..... .+.+++..++.++..+.+.+.|.++ |+.+..+ ..+
T Consensus 233 ~g~~~~~~~~~~~~g~~~~~~~l~a--a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 304 (391)
T 3dr4_A 233 QGMDPNRRYWFPIVGFNYRMTNIQA--AIGLAQ-----LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHV 304 (391)
T ss_dssp TTCCTTSTTCCSSCCCBCBCCHHHH--HHHHHH-----HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCC
T ss_pred cCCCCCCcccccccccccCCCHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcce
Confidence 221 22233322 222222 2334556666777788888888888 7766544 123
Q ss_pred -EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC---C-----------------CCCcEEEEeec--
Q 012124 389 -FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---G-----------------DDTCIRISYAA-- 445 (470)
Q Consensus 389 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f---~-----------------~~~~iRls~~~-- 445 (470)
+.+++.+++.. ..+..++.+.|.++ ||.+.+|... . ....+||++..
T Consensus 305 ~~~~~i~~~~~~---------~~~~~~l~~~L~~~-GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~ 374 (391)
T 3dr4_A 305 FWMYTVRLGEGL---------STTRDQVIKDLDAL-GIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGL 374 (391)
T ss_dssp CSSEEEEECSSC---------SSCHHHHHHHHHHT-TCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTC
T ss_pred eEEEEEEECCcc---------chhHHHHHHHHHHC-CCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCC
Confidence 22466666410 01678899988766 9999987511 0 02469999886
Q ss_pred CHHHHHHHHHHHHHHH
Q 012124 446 SLTTLQAAVERIKKGL 461 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~l 461 (470)
++++++.+++.|++++
T Consensus 375 t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 375 TEADIDRVIAALDQVL 390 (391)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=250.63 Aligned_cols=335 Identities=14% Similarity=0.128 Sum_probs=225.5
Q ss_pred cCCCeEEccCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~-~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++||+.|.+ .+. .++.+.+++.+++.+.. .|+ +..++++.+++++.+.++ .+++|++++|+++++.
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~ 122 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATM 122 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 4667899998863 233 47899999999987642 232 345778888888877654 5689999999999999
Q ss_pred HHHHH---hcCCCCeEEEcCCCCCChHHHHH-H-------------cCC------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLA---VCSPGDEVIIPAPFWVSYPEMAR-I-------------ADA------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~---l~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++. +. +++.|++.+|+|+++...+. . .|. +++.+|. .|++.|+++++
T Consensus 123 ~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 194 (424)
T 2e7u_A 123 SALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLK 194 (424)
T ss_dssp HHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHH
Confidence 99886 44 45788899999998654322 1 122 3444543 38899999886
Q ss_pred ---CCceEEEEcCCCC-CcccCC-CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccC
Q 012124 226 ---EKSRLLILCSPSN-PTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 300 (470)
Q Consensus 226 ---~~~~~i~l~~p~n-PtG~~~-s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~s 300 (470)
++++ +++++|+| +||..+ +.+++++|.++ ++| |++||+||+|.++.+ +. ...+..+.- ... +.|||
T Consensus 195 ~~~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~-g~~lI~DEv~~g~~~-g~-~~~~~~~~~-~~d---i~s~s 265 (424)
T 2e7u_A 195 RRGEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAY-GVLLIADEVMTGFRL-AF-GGATELLGL-KPD---LVTLG 265 (424)
T ss_dssp HHGGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGG-TCEEEEECTTTTTTS-ST-THHHHHHTC-CCS---EEEEC
T ss_pred hCCCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc-CCEEEEecCcccccc-ch-hHHHHHhCC-Ccc---hhhhh
Confidence 3444 44556654 599765 79999999999 999 999999999998733 32 111111111 111 34999
Q ss_pred cccccccceeeEEEcCHHHHHHHHHHh---hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 301 KAFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 301 K~~~~~G~r~G~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
|.++ +|+|+||+++++++++.+.... ...+++.+++.+.++.++|+.. ++ .+++.++++++++++.+.|+++
T Consensus 266 K~l~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~-~~~~~~~~~~~~~~l~~~L~~~ 340 (424)
T 2e7u_A 266 KILG-GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE-NPGYYAYLEDLGARLEAGLKEV 340 (424)
T ss_dssp GGGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH-CTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-CCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7999999999999888765421 2235578899999888888641 11 1345566666677777666653
Q ss_pred ---CCCeecCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHH
Q 012124 378 ---EGVKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQA 452 (470)
Q Consensus 378 ---~g~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~ 452 (470)
.++....+..|.++|+++++....... ......+..++++.|++ +||.+.||.. .++|+++..+++++++
T Consensus 341 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~----~~~~~~~~~t~~~i~~ 415 (424)
T 2e7u_A 341 LKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNF----EAAFLSVAHREEDVEK 415 (424)
T ss_dssp HHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSS----SCEECCTTCCHHHHHH
T ss_pred HHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCC----CceEeeccCCHHHHHH
Confidence 133221123455688888641000000 00000024578888875 5999999752 3578887679999999
Q ss_pred HHHHHHHH
Q 012124 453 AVERIKKG 460 (470)
Q Consensus 453 ~l~~l~~~ 460 (470)
++++|+++
T Consensus 416 ~l~~l~~~ 423 (424)
T 2e7u_A 416 TLEALRKA 423 (424)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=249.15 Aligned_cols=347 Identities=14% Similarity=0.117 Sum_probs=218.7
Q ss_pred cCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCCC-CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 92 AGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~~-~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+|+.++|++.|... +. .++.+.+++.+++.+... .| +. +....+++.+.+..+ .+++|++++|+++++
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-~~----~~~~~la~~l~~~~~---~~~~v~~~~sGsea~ 122 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGA-PT----EMEVKMAQLVTDLVP---TMDMVRMVNSGTEAT 122 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS-CC----HHHHHHHHHHHHHST---TCSEEEEESSHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCC-CC----HHHHHHHHHHHhhCC---CCCEEEEeCcHHHHH
Confidence 57789999988743 33 378999999999876432 23 33 455555555555444 468999999999999
Q ss_pred HHHHHHhc--CCCCeEEEcCCCCCChHHHHH-HcC--CEEEEecCcCCCCC------------ccCHHhHhhhccC--Cc
Q 012124 168 LQAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IAD--ATPVILPTRISENF------------LLDPKVLESKLTE--KS 228 (470)
Q Consensus 168 ~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~g--~~~~~v~~~~~~~~------------~~d~~~l~~~l~~--~~ 228 (470)
+.+++... ..++.|++.+++|++....+. ..| ......+.. .+. ..|++.|++++++ +.
T Consensus 123 ~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 200 (429)
T 4e77_A 123 MSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS--PGVPTDFAKHTLTCTYNDLASVRQAFEQYPQE 200 (429)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCC------------------CCC--TTSCGGGGTTEEEECTTCHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc--CCCCCccCCceeecCCCCHHHHHHHHHhcCCC
Confidence 99998543 356889999999998765221 111 111111110 000 0188999998863 23
Q ss_pred eEEEEcCCCCCc-cc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 229 RLLILCSPSNPT-GS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 229 ~~i~l~~p~nPt-G~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
.++++++|+|++ |. ..+++.+++|.++|++| |+++|+||+|.+| ..+. ......+.- ... +.||||.++ +
T Consensus 201 ~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~-r~g~-~~~~~~~~~-~pd---i~t~sK~~~-~ 272 (429)
T 4e77_A 201 VACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF-GALLIIDEVMTGF-RVAL-AGAQDYYHV-IPD---LTCLGKIIG-G 272 (429)
T ss_dssp EEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEEETTTBT-TTBT-TCHHHHTTC-CCS---EEEEEGGGG-T
T ss_pred EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCc-ccCc-chHHHhcCC-CCC---eeeeccccc-C
Confidence 344556665544 44 44567799999999999 9999999999987 3332 111111111 111 458999998 8
Q ss_pred cceeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 307 GWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
|+|+||+++++++++.+... ....+++.+++.+.++.++|+.... +++.++.++..+..++.+.+.+.++ ++...
T Consensus 273 G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~ 350 (429)
T 4e77_A 273 GMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTDSLATGLRHAAKEE-NIPLV 350 (429)
T ss_dssp TSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCCE
T ss_pred CCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC-CCceE
Confidence 99999999999998877642 1334567899999999988874322 3444444444444445555444444 33333
Q ss_pred CCCceEEEeeeccCccCC-ccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGS-EAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
.+..|+++|+.+++.... ... .........++++.|+++ ||.+.|+.. ..+|+++..+++++++++++|+++
T Consensus 351 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~ 425 (429)
T 4e77_A 351 VNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----EAGFMSLAHSNEDIQKTVNAARRC 425 (429)
T ss_dssp EEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC----CCEEEeccCCHHHHHHHHHHHHHH
Confidence 344567788888653000 000 000000126788888776 999998742 467777667999999999999998
Q ss_pred HHh
Q 012124 461 LLT 463 (470)
Q Consensus 461 l~~ 463 (470)
+++
T Consensus 426 l~~ 428 (429)
T 4e77_A 426 FAK 428 (429)
T ss_dssp HTT
T ss_pred HHh
Confidence 864
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=239.66 Aligned_cols=288 Identities=14% Similarity=0.173 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH----cCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~ 209 (470)
.+.++.+++.+.+..|. +++++++|+++++..++.+++++||+|++++|+|+++...++. .|++++.++.+
T Consensus 80 ~p~~~~l~~~la~~~g~----~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGA----PAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred ChHHHHHHHHHHHHHCC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 45666666666665553 5789999999999999999999999999999999998877644 99999999873
Q ss_pred CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
|++.|++++++++++|++++|+||||.+.+ +++|+++|+++ |++||+|++|....+. .++ .
T Consensus 155 ------d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~----~~~-~---- 215 (414)
T 3ndn_A 155 ------DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAA-GAKVVLDNVFATPLLQ----QGF-P---- 215 (414)
T ss_dssp ------CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHC----CCG-G----
T ss_pred ------CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-h----
Confidence 899999999999999999999999999988 88999999999 9999999999853221 111 1
Q ss_pred CCceEEEeccCccccccc-ceeeEEEcCHHHHH-HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (470)
.+..+++.|+||.++.+| +++||++++++.+. .+...........+++...++...++ .+....++..+++
T Consensus 216 ~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~-------~l~~r~~~~~~~a 288 (414)
T 3ndn_A 216 LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE-------TLAIRVQHSNASA 288 (414)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG-------GHHHHHHHHHHHH
T ss_pred cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 245689999999998668 89999999998876 66655555555566665444444333 3444555667777
Q ss_pred HHHHHHhccCCCCee-cCCC----------------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECC
Q 012124 368 DFLVKSFGELEGVKM-SEPQ----------------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPG 430 (470)
Q Consensus 368 ~~l~~~L~~~~g~~~-~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg 430 (470)
+.+.+.|++.|++.. ..|. .|..+|+.+++..... .++...+.+.|. ..++.+.+|
T Consensus 289 ~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~------~~~~~~~~~~l~-~~~~~~s~G 361 (414)
T 3ndn_A 289 QRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA------KQRAFEVLDKMR-LIDISNNLG 361 (414)
T ss_dssp HHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH------HHHHHHHHHHCS-SSEECSCCS
T ss_pred HHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc------HHHHHHHHHhCc-cceEcCCCC
Confidence 888888888776532 2221 3556899986420000 003556666653 447777777
Q ss_pred CCCC-----------------------CCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 431 DAFG-----------------------DDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 431 ~~f~-----------------------~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
..+. .++.||||++. |+.++.++.|++++
T Consensus 362 ~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 362 DAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp CSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred CCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 6542 14689999997 22334445555544
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=242.27 Aligned_cols=361 Identities=12% Similarity=-0.001 Sum_probs=251.8
Q ss_pred HHHHHHHHHHHH-hcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC---
Q 012124 79 TVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP--- 154 (470)
Q Consensus 79 ~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~--- 154 (470)
..++.+...... .++....++....+ ...++.+.+++.+++.....+|...++..++++.+++++.+.+|.+.+.
T Consensus 25 ~~~v~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~ 103 (452)
T 2dgk_A 25 DDVAFQIINDELYLDGNARQNLATFCQ-TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQ 103 (452)
T ss_dssp HHHHHHHHHHHGGGSCCCTTBCSCCSC-CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSC
T ss_pred HHHHHHHHHHHhcCCCCCccCCCCeeC-CCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccC
Confidence 345555555544 33332233333333 2345778888888876655667777788999999999999999964332
Q ss_pred CcEEEecChHHHHHHHHHHhcC--------CC-----CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHh
Q 012124 155 DQILVSNGAKQSILQAVLAVCS--------PG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 221 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~l~~--------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 221 (470)
..+++|+|+++++.+++.++.+ +| ++|++++ +|..+...++..|++++.+|+++ +++.+|++.|+
T Consensus 104 ~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~ 181 (452)
T 2dgk_A 104 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMI 181 (452)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHH
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHH
Confidence 2499999999999999888754 55 5999999 99999999999999999999974 35779999999
Q ss_pred hhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh------CCCEEEEEecccccccc---CCCCcccccccCCCCCc
Q 012124 222 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIY---APATHTSFASLPGMWER 292 (470)
Q Consensus 222 ~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~------~~~~~iI~Dd~~~~~~~---~~~~~~~~~~~~~~~~~ 292 (470)
+++++++++|++++|+||||.+.+ +++|.++|++ + ++++++|++|+.+.. .+. .. ..+. ..+-
T Consensus 182 ~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~-~~~l~vD~a~~~~~~~~~~~~-~~--~~~~-~~~~ 253 (452)
T 2dgk_A 182 EACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPD-IV--WDFR-LPRV 253 (452)
T ss_dssp HHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTT-CC--CSTT-STTE
T ss_pred HHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCC-CCcEEEEcccHHHHHHhhCcc-ch--hhcC-CCCC
Confidence 999989999999999999999988 7888888888 6 899999999998643 221 11 1111 1234
Q ss_pred eEEEeccCcccccccceeeEEEcCHH-HH-HHHHHHhhhc---------cCCC---ChHHHHHHHHHHhcCCCChHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKH-FV-AACNKIQSQF---------TSGA---SSISQKAGVAALGLGYAGGEVVSK 358 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~-~~-~~l~~~~~~~---------~~~~---~~~~q~a~~~~l~~~~~~~~~~~~ 358 (470)
.++..|++|.+ +.|.++||++++++ ++ +.+....... .... ..+.|.++...+. .+.+++
T Consensus 254 d~~~~~~hK~~-~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~ 327 (452)
T 2dgk_A 254 KSISASGHKFG-LAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTK 327 (452)
T ss_dssp EEEEEETTTTT-CCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHH
T ss_pred cEEEECccccc-CCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHH
Confidence 56778889955 58899999998643 33 3321101110 0111 2334444444442 456788
Q ss_pred HHHHHHHHHHHHHHHhccCCCCeecCC-----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC--
Q 012124 359 MVKAFRERRDFLVKSFGELEGVKMSEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD-- 431 (470)
Q Consensus 359 ~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~-- 431 (470)
+.+++.++++++.+.|++++++++..| ..++ +.+++++... ...+..++.++|.++ ||.+....
T Consensus 328 ~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~-v~f~~~~~~~-------~~~~~~~l~~~L~~~-Gi~v~~~~~~ 398 (452)
T 2dgk_A 328 VQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA-VCFKLKDGED-------PGYTLYDLSERLRLR-GWQVPAFTLG 398 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSE-EEEEECTTCC-------CSCCHHHHHHHHHHT-TCBCCEEECS
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEE-EEEEecCccc-------ccCCHHHHHHHHHhc-CCeeeeeeCC
Confidence 888999999999999999877887643 3344 5556653200 001457888888766 88543211
Q ss_pred -CCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 432 -AFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 432 -~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.....+++|++++. ++++++.+++.|++++++++
T Consensus 399 ~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~ 435 (452)
T 2dgk_A 399 GEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLS 435 (452)
T ss_dssp TTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11124589999986 78999999999999887654
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=241.77 Aligned_cols=336 Identities=14% Similarity=0.110 Sum_probs=218.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCC-----CCcCcHHHHHHHH-HHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYT-----PNAGTLELRSAIC-HKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~-----~~~g~~~lr~~ia-~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.++|..+.+.. ++.+++++.+++.+.. ..|. ......++.+.++ +++.+..|. +. ..++++|+++++
T Consensus 33 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~ 107 (425)
T 3ecd_A 33 SQVELIASENIV--SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA--GH-ANVQPHSGAQAN 107 (425)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHH
T ss_pred cceeeecccCCC--CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHH
Confidence 357887666543 8889999988875321 1221 1111112334443 666655563 22 234588888999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCC---hHHHHHHcCC--EEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADA--TPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.+++++||+|++++|+|++ +.......|. +++.++.++ +++.+|++.|+++++ +++++|++++|+||+
T Consensus 108 ~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~- 185 (425)
T 3ecd_A 108 GAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTMLIDYDQVEALAQQHKPSLIIAGFSAYPR- 185 (425)
T ss_dssp HHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEEECSCCCS-
T ss_pred HHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCccCHHHHHHHHhhcCCcEEEEccccCCC-
Confidence 99999999999999999999988 2222223444 566676653 346799999999996 589999999899974
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF 319 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~ 319 (470)
..+ +++|.++|++| |++||+||+|. ++.+.+.....+. ...+++.||||.+ +|.|+||++++ +++
T Consensus 186 -~~~---l~~i~~l~~~~-~~~li~De~~~~g~~~~~~~~~~~~------~~di~~~s~sK~l--~g~~~g~~~~~~~~~ 252 (425)
T 3ecd_A 186 -KLD---FARFRAIADSV-GAKLMVDMAHIAGVIAAGRHANPVE------HAHVVTSTTHKTL--RGPRGGFVLTNDEEI 252 (425)
T ss_dssp -CCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGGG------TCSEEEEESSGGG--CCCSCEEEEESCHHH
T ss_pred -cCC---HHHHHHHHHHc-CCEEEEECcChHhhhhcccccCchh------cCcEEEecCCccc--CCCCcEEEEeCCHHH
Confidence 444 78999999999 99999999954 3334332211211 1238899999987 67789999998 567
Q ss_pred HHHHHHHhhhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccC
Q 012124 320 VAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 397 (470)
Q Consensus 320 ~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~ 397 (470)
.+.+......... +++...+.++..++... ..+++++.+++++++++++.+.|.+. |+.+..+ ..++++|+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 329 (425)
T 3ecd_A 253 AKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRP 329 (425)
T ss_dssp HHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCC
Confidence 7777665433322 33444444444444321 24677888899999999999999886 8887654 456778888764
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCCC--CCCcEEEEeec------CHHHHHHHHHHHHHHHHhh
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAFG--DDTCIRISYAA------SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f~--~~~~iRls~~~------~~~~i~~~l~~l~~~l~~~ 464 (470)
.. .+...+.+.| +++||.+. ||..+. .++++|+++.. ++++++++++.|++++++.
T Consensus 330 ~~----------~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 330 KG----------LKGAQVEQAL-ERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp GT----------CCHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC----------CCHHHHHHHH-HHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 21 1556666666 45599999 543222 24589999653 4799999999999988764
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=237.50 Aligned_cols=284 Identities=16% Similarity=0.203 Sum_probs=207.9
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 204 (470)
+..+..++++.+++++. . . +.|++++| ++++..+++.++++||+|++++|+|++.... ++..|++++.
T Consensus 50 ~~~~~~~l~~~la~~~~----~--~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEG----G--A-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp CCHHHHHHHHHHHHHHT----C--S-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCccHHHHHHHHHHHhC----C--C-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 45667889999999873 2 2 66777666 8999999999999999999999999975543 3668999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++.+ |++.+++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+||+|..+.+.. ++
T Consensus 122 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~----~~- 185 (386)
T 1cs1_A 122 VDQG-------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPALQN----PL- 185 (386)
T ss_dssp ECTT-------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-
T ss_pred eCCC-------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccCC----cc-
Confidence 8862 889999999889999999999999999998 88999999999 99999999999865431 11
Q ss_pred ccCCCCCceEEEeccCccccccccee-eEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
. .+.++++.|+||.++.+|.|+ ||+++++ ++++.+......++.+.+++.+.++...++. +....+.
T Consensus 186 ~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~ 254 (386)
T 1cs1_A 186 A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMEL 254 (386)
T ss_dssp G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHH
T ss_pred c----cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-------HHHHHHH
Confidence 1 356799999999998789887 9999985 8888888777666666788888777666652 3344455
Q ss_pred HHHHHHHHHHHhccCCCCeec--------------C----CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCC
Q 012124 363 FRERRDFLVKSFGELEGVKMS--------------E----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~g~~~~--------------~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 424 (470)
..++++.+.+.|++++.+... . ..+++ +.+.+++ ....+.+.| ++.|
T Consensus 255 ~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~l-~~~g 319 (386)
T 1cs1_A 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM-LSFELDG-------------DEQTLRRFL-GGLS 319 (386)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEESS-------------CHHHHHHHH-HTCS
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceE-EEEEECC-------------CHHHHHHHH-HhCC
Confidence 566677777777665443211 1 12445 5556653 334555555 4569
Q ss_pred EEEECCCCCC---------------------------CCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 425 VALVPGDAFG---------------------------DDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 425 I~v~pg~~f~---------------------------~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.+.+.+ |+ .++++|++++. ++.++.+++|.++++++.
T Consensus 320 i~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 320 LFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp SSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHHT
T ss_pred cceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHHHHHHHhh
Confidence 9886421 11 14799999998 334455555555555543
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=240.95 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=157.1
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 204 (470)
+..+..+|++.+++++. . .+.|++++| ++++..++. ++++||+|++++|+|++....+ +..|++++.
T Consensus 65 ~~p~~~~l~~~la~~~g----~---~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~ 135 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDG----A---KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISF 135 (403)
T ss_dssp -CHHHHHHHHHHHHHHT----C---SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEE
T ss_pred CCchHHHHHHHHHHHhC----C---CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEE
Confidence 44567899999999873 2 256777766 589999998 8999999999999999865543 568999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCC-EEEEEeccccccccCCCCcccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~-~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
++.+ |++.+++++++++++|++++|+||||.+++ +++|+++|+++ | +++|+|++|..+.+.. ++
T Consensus 136 v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~-g~~~livD~~~~~~~~~~----~~ 200 (403)
T 3cog_A 136 VDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKH-GDIILVVDNTFMSPYFQR----PL 200 (403)
T ss_dssp ECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSS-SCCEEEEECTTTCTTTCC----TT
T ss_pred ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCCEEEEECCCcccccCC----cc
Confidence 9863 889999999999999999999999999998 89999999999 9 9999999999865421 11
Q ss_pred cccCCCCCceEEEeccCccccccc-ceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhc
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGL 348 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 348 (470)
+ .+.++++.|+||.++.+| .|+||++++ +++++.+......++.+.+++.+.++...++.
T Consensus 201 ---~--~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 201 ---A--LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp ---T--TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred ---c--cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 1 256799999999997666 479999984 78989888877767777889988888877764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=237.80 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=198.6
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 204 (470)
+.....++++.+++++ |. ++.++++++++++..++.+++++||+|++++|+|+++...+ +..|.+++.
T Consensus 63 ~~~~~~~l~~~la~~~----g~----~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GG----EAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred CChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3445566677777665 42 24555555579999999999999999999999999988766 678999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 284 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~ 284 (470)
++. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|..+.+.. ++
T Consensus 135 ~~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~~~----~~- 198 (398)
T 1gc0_A 135 VDM-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQR----PL- 198 (398)
T ss_dssp ECT-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHCC----GG-
T ss_pred ECC-------CCHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-
Confidence 886 2899999999989999999999999999998 89999999999 99999999998765431 11
Q ss_pred ccCCCCCceEEEeccCccccccccee-eEEEcCHHHHH-HHHHHhhh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 285 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 285 ~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~~~~~-~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
. .+.++++.|+||.++.+|.|+ ||++++++.++ .+...... .+.+.+++.+.++...++. +....+
T Consensus 199 ~----~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~ 267 (398)
T 1gc0_A 199 E----LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMD 267 (398)
T ss_dssp G----GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHH
T ss_pred h----hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-------HHHHHH
Confidence 1 246699999999998899998 99999988766 55555544 4556788888877777753 233334
Q ss_pred HHHHHHHHHHHHhccCCCC--------------eecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC
Q 012124 362 AFRERRDFLVKSFGELEGV--------------KMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 423 (470)
Q Consensus 362 ~~~~~~~~l~~~L~~~~g~--------------~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 423 (470)
...++.+.+.+.|++++++ .+..+ .+++ +.++++. ..+....++++.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~~--------------~~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGM-IAFELKG--------------GIGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTE-EEEEETT--------------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceE-EEEEECC--------------CHHHHHHHHHhC
Confidence 4455555555666554332 22222 3455 4446652 222334455555
Q ss_pred CEEEEC---CCCC----------------------C-CCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 424 QVALVP---GDAF----------------------G-DDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 424 gI~v~p---g~~f----------------------~-~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
++.+.. |+.+ + .++.+|+|++. ++++++.+.+.|++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 776655 3210 1 14789999997 55667776666654
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=234.28 Aligned_cols=278 Identities=15% Similarity=0.161 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~ 210 (470)
+|++.+++++ |. + +.+++++| ++++..++.+++++||+|++++|+|+++...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~----g~--~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 70 (331)
T 1pff_A 2 ALEGKIAKLE----HA--E-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHH----TC--S-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred hHHHHHHHHh----CC--C-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence 5888888886 32 2 45555555 89999999999999999999999999987665 458999999886
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh-CCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~-~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
.|++.+++++++++++|++++|+||||.+++ +++|.++|++ + |+++|+|++|..+.+.. ++ .
T Consensus 71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~-~~~li~D~a~~~~~~~~----~~-~---- 133 (331)
T 1pff_A 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILTN----PL-D---- 133 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHCC----GG-G----
T ss_pred ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhc-CCEEEEECCCcccccCC----hh-h----
Confidence 4889999999989999999999999999998 8999999999 9 99999999998754421 12 1
Q ss_pred CCceEEEeccCcccccccce-eeEEEcCH-HHHHHHHHHhhh-ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTGWR-LGYIAGPK-HFVAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G~r-~G~~~~~~-~~~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+.++++.|+||.++.+|.| +||+++++ ++++.+...... .+.+.+++.+.++...++. .....+...+.....
T Consensus 134 ~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~ 210 (331)
T 1pff_A 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT---LDMRVKRAAENAQKV 210 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---HHHHHHHHHHHHHHH
Confidence 35779999999999889999 79999998 899888876655 5566788888776666653 122222222222222
Q ss_pred HHHHHH----------HhccCCCCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 367 RDFLVK----------SFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 367 ~~~l~~----------~L~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
.+++.+ .|.+++++++..+ .+++ +.+.++ +..++.+.| ++.||.+.+.+.
T Consensus 211 ~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~l-~~~gI~~~~~s~ 274 (331)
T 1pff_A 211 AEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSM-IAFDVD--------------GLEKAKKVL-DNCHVVSLAVSL 274 (331)
T ss_dssp HHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSE-EEEECS--------------SHHHHHHHH-HTCSSSEECSSC
T ss_pred HHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceE-EEEEEC--------------CHHHHHHHH-HhCCCceeccCC
Confidence 222222 1222334443321 2344 566664 344555554 556997765421
Q ss_pred -------------------------CCC-CCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 433 -------------------------FGD-DTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 433 -------------------------f~~-~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
++. ++++|++++. ++++++.+++.|++
T Consensus 275 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 275 GGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp CSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 111 5799999997 66777777776654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=232.68 Aligned_cols=282 Identities=14% Similarity=0.128 Sum_probs=208.7
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEec
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILP 206 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~ 206 (470)
....+|++.+++++ |. +++++++|+++++..++..++++||+|++++|+|+++...+ +..|.+++.++
T Consensus 66 ~~~~~l~~~la~~~----g~----~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 66 PTRTALEAALAAVE----DA----AFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHHT----TC----SEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 34556777777764 32 47899999999999999999999999999999999887766 67899999998
Q ss_pred CcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc
Q 012124 207 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 207 ~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.+ |++.+++++++++++|++++|+||||.+.+ +++|+++|++| |+++|+|++|...... .++ .
T Consensus 138 ~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-g~~li~D~~~~~~~~~----~~~-~- 200 (392)
T 3qhx_A 138 LA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADS-SAKVLVDNTFASPALQ----QPL-S- 200 (392)
T ss_dssp TT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----CGG-G-
T ss_pred CC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHc-CCEEEEECCCcccccC----ChH-H-
Confidence 63 899999999999999999999999999998 89999999999 9999999999854221 111 1
Q ss_pred CCCCCceEEEeccCccccccc-ceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
.+..+++.|+||.++.+| +|+||++++ +++.+.+.........+.+++.+.++...++. +....++..
T Consensus 201 ---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------l~~~~~~~~ 270 (392)
T 3qhx_A 201 ---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-------LVLRMQRHS 270 (392)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred ---hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-------HHHHHHHHH
Confidence 245699999999998666 799999997 68888888887777788888888887777764 223344556
Q ss_pred HHHHHHHHHhccCCCCe-ecCC----------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE
Q 012124 365 ERRDFLVKSFGELEGVK-MSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427 (470)
Q Consensus 365 ~~~~~l~~~L~~~~g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v 427 (470)
++.+.+.+.|++.+++. +..| ..|..+++.++... .....+...| +..++.+
T Consensus 271 ~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~----------~~~~~~~~~l-~~~~~~~ 339 (392)
T 3qhx_A 271 ENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR----------TAAEQLCAKT-NIFILAE 339 (392)
T ss_dssp HHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH----------HHHHHHHHHC-SSSEECS
T ss_pred HHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH----------HHHHHHHHhC-CCceECC
Confidence 66667777777766553 2211 11445788887520 0355666655 3447777
Q ss_pred ECCCCCC--------------------CCCcEEEEeecCHHHHHHHHHHHHHH
Q 012124 428 VPGDAFG--------------------DDTCIRISYAASLTTLQAAVERIKKG 460 (470)
Q Consensus 428 ~pg~~f~--------------------~~~~iRls~~~~~~~i~~~l~~l~~~ 460 (470)
..|+.+. .++.||||++.. +.++.++.|.++
T Consensus 340 s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e--~~~~~i~~l~~a 390 (392)
T 3qhx_A 340 SLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIE--DVADLLDDLKQA 390 (392)
T ss_dssp CCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSS--CHHHHHHHHHHH
T ss_pred CCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccC--CHHHHHHHHHHH
Confidence 7776532 145799999972 233344444444
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-27 Score=230.27 Aligned_cols=281 Identities=15% Similarity=0.177 Sum_probs=201.5
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v 205 (470)
.....+|++.+++++ |. +++++++++++++..++.+++++||+|++++|+|+++... ++..|.+++.+
T Consensus 58 ~~~~~~l~~~la~~~----g~----~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 129 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GA----AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI 129 (389)
T ss_dssp CHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 345567888888875 32 2566677778999999999999999999999999987665 57799999999
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|..+.+. .++
T Consensus 130 ~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~-~~~livD~~~~~~~~~----~~~-- 192 (389)
T 3acz_A 130 DT-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHER-GARLVVDATFTSPCFL----KPL-- 192 (389)
T ss_dssp CT-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----CGG--
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccc----Ccc--
Confidence 86 3899999999999999999999999999998 88999999999 9999999999875432 122
Q ss_pred cCCCCCceEEEeccCccccccccee-eEEEcCH-HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 363 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~ 363 (470)
+ .+.++++.|+||.++.+|.|+ ||+++++ ++++.+......+..+.+++.+.++...++. ....+++.
T Consensus 193 -~--~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~---l~~r~~~~---- 262 (389)
T 3acz_A 193 -E--LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT---LPIRMQIH---- 262 (389)
T ss_dssp -G--TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---HHHHHHHH----
T ss_pred -c--cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---HHHHHHHH----
Confidence 1 256699999999998899998 9999998 9999888777656666788877777777753 12223333
Q ss_pred HHHHHHHHHHhccC--------------CCCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE
Q 012124 364 RERRDFLVKSFGEL--------------EGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425 (470)
Q Consensus 364 ~~~~~~l~~~L~~~--------------~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI 425 (470)
.++.+.+.+.|++. |++.+..+ .+++ +.+.++ ...++ .+++++.||
T Consensus 263 ~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~-~~~~l~--------------~~~~~-~~~l~~~~i 326 (389)
T 3acz_A 263 MENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGST-FLFEMK--------------SFEAA-KKLMEHLKV 326 (389)
T ss_dssp HHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE-EEEEES--------------SHHHH-HHHHTTCSS
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeE-EEEEEC--------------CHHHH-HHHHHhCCC
Confidence 33333344444332 23222211 2444 556664 22233 344555688
Q ss_pred EEEC---C------CCC----------------CC-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 426 ALVP---G------DAF----------------GD-DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 426 ~v~p---g------~~f----------------~~-~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.+.+ | ..+ +. ++.+|+|++.. +.++.++.|.+++++
T Consensus 327 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~--~~~~li~~l~~al~~ 388 (389)
T 3acz_A 327 CTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE--NVDDIIADLKQALEL 388 (389)
T ss_dssp SEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS--CHHHHHHHHHHHHTC
T ss_pred cEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC--CHHHHHHHHHHHHhh
Confidence 7766 4 211 11 47899999974 455666777776653
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=231.95 Aligned_cols=316 Identities=17% Similarity=0.159 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcC--cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPA 185 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g--~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~ 185 (470)
++++++++.+.+.. .|.++.| ..++|+++++++. .++|++|+|+++++.+++.++ +++||+|++++
T Consensus 11 ~~~v~~a~~~~~~~---~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~ 79 (394)
T 1o69_A 11 GGNELKYIEEVFKS---NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASS 79 (394)
T ss_dssp -CCHHHHHHHHHHH---TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred CHHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECC
Confidence 35677777777765 3656667 8999999999973 268999999999999999999 89999999999
Q ss_pred CCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCE
Q 012124 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262 (470)
Q Consensus 186 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~ 262 (470)
|+|+++...++..|++++.++++ .++.+|++.|++++++ ++++|++++ |||...+ +++|.++|+++ |+
T Consensus 80 ~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~-~~ 150 (394)
T 1o69_A 80 FTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DI 150 (394)
T ss_dssp SSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TC
T ss_pred CccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHc-CC
Confidence 99999999999999999999986 4566999999999875 789988874 8997776 88999999999 99
Q ss_pred EEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHHHHHHHhhhccCC-------
Q 012124 263 LVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG------- 333 (470)
Q Consensus 263 ~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~~l~~~~~~~~~~------- 333 (470)
+||+|++|+ ++.+.+.. +..+ .+ +.+.||||..+++|.|+||++++ +++++.+.........+
T Consensus 151 ~li~Dea~~~g~~~~~~~---~~~~---~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 222 (394)
T 1o69_A 151 VLIEDAAEALGSFYKNKA---LGTF---GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHL 222 (394)
T ss_dssp EEEEECTTCTTCEETTEE---TTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCS
T ss_pred EEEEECcCcccceeCCcc---cccc---cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCcccccc
Confidence 999999998 45444321 1111 12 45556643333456799999995 88888887764432111
Q ss_pred -------CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceE-EEeeeccCcc--
Q 012124 334 -------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAF-YLFIDFSTYY-- 399 (470)
Q Consensus 334 -------~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~-~~~~~~~~~~-- 399 (470)
++.+...++...++ ++++..++++++++++.+.|.++ +++.++. +++ .+++.++...
T Consensus 223 ~~g~~~~~~~~~aa~~l~~l~-------~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 223 DYGYNYRLSNVLGAIGVAQME-------VLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp SCCCBCBCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred ccCcccCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhc
Confidence 22233322222222 34556777888888888888875 5544332 343 2566665310
Q ss_pred --------CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC------CC--------------CcEEEEeec--CHHH
Q 012124 400 --------GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG------DD--------------TCIRISYAA--SLTT 449 (470)
Q Consensus 400 --------~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~------~~--------------~~iRls~~~--~~~~ 449 (470)
.....+.....+..++.+.|.++ ||.+.+|.... .. ..+|+.... +++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ed 372 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDD 372 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHH
T ss_pred cccccccccccccccccccCHHHHHHHHHHc-CCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHH
Confidence 00000000000456788887664 99999984220 00 234444443 8999
Q ss_pred HHHHHHHHHHHHH
Q 012124 450 LQAAVERIKKGLL 462 (470)
Q Consensus 450 i~~~l~~l~~~l~ 462 (470)
++.+++.|+++++
T Consensus 373 i~~~~~~l~~~~~ 385 (394)
T 1o69_A 373 VYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-26 Score=227.25 Aligned_cols=300 Identities=18% Similarity=0.194 Sum_probs=208.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCC--cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEE
Q 012124 105 DFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 182 (470)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~y~~~--~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vl 182 (470)
+++.++.+.+++. ....+.|+.. ....++++.+++++ |. +++++|+|+++++..++.+++++||+|+
T Consensus 31 ~~~~~~~~~~~~~---~~~~~~y~~~~~~~~~~l~~~la~~~----g~----~~~~~~~~gt~a~~~al~~l~~~gd~vi 99 (412)
T 2cb1_A 31 GFKTLEEGQERFA---TGEGYVYARQKDPTAKALEERLKALE----GA----LEAVVLASGQAATFAALLALLRPGDEVV 99 (412)
T ss_dssp CCSSHHHHHHHHH---HCCSCSBTTTCCHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHTTCCTTCEEE
T ss_pred ecCChHHHHHHhc---cccCcCcCCCCChHHHHHHHHHHHHh----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 4455666666553 3344566543 44667777777775 32 4899999999999999999999999999
Q ss_pred EcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh
Q 012124 183 IPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 258 (470)
Q Consensus 183 v~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~ 258 (470)
+++|+|++....+ +..|++++.++. |++.|++++++++++|++++|+||||.+++ +++|+++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~ 168 (412)
T 2cb1_A 100 AAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEE 168 (412)
T ss_dssp EETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHH
T ss_pred EeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHH
Confidence 9999998766553 458999998875 489999999989999999999999999998 8999999999
Q ss_pred CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH---------------------
Q 012124 259 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------------------- 317 (470)
Q Consensus 259 ~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~--------------------- 317 (470)
| |+++|+|++|..+.+.. .++ . .+.++++.|+||.++.+|.|+|++++.+
T Consensus 169 ~-~~~li~D~~~~~~~~~~---~~~---~--~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (412)
T 2cb1_A 169 A-GVALVVDNTFGAAGALC---RPL---A--WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIP 239 (412)
T ss_dssp H-TCEEEEECGGGTTTTSC---CGG---G--GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------
T ss_pred c-CCEEEEECCCccccccC---Ccc---c--cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccch
Confidence 9 99999999998752211 111 1 3567999999999977999999988543
Q ss_pred -------HHHHHHHHHh-hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-CC---
Q 012124 318 -------HFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EP--- 385 (470)
Q Consensus 318 -------~~~~~l~~~~-~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~--- 385 (470)
++.+.++... .......++....++...++. +....++..++.+.+.+.|.+.+++... .|
T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~ 312 (412)
T 2cb1_A 240 WEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLP 312 (412)
T ss_dssp HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTST
T ss_pred hhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC
Confidence 3444444432 222233445444443333332 2334444567778888888888787633 22
Q ss_pred -------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCC---------CCC---------
Q 012124 386 -------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD---------AFG--------- 434 (470)
Q Consensus 386 -------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~---------~f~--------- 434 (470)
..+.++.+.+ + +...+.+. +++.||.+ .++ .+.
T Consensus 313 ~~p~~~~~~~~~~~~~~iv~~~~-~-------------~~~~~~~~-l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~ 376 (412)
T 2cb1_A 313 EDPAHRNARKYLASGGPILTLDL-G-------------DLERASRF-LGAIRLLK-AANLGDARTLLVHPWTTTHSRLKE 376 (412)
T ss_dssp TCTTHHHHHHHCSSSCSEEEEEC-S-------------SHHHHHHH-HHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCH
T ss_pred CCccHHHHHHhCCCCceEEEEEe-C-------------CHHHHHHH-HHhCCeee-ecccCCCcceeecCcccccccCCH
Confidence 1233355666 2 34455554 44568988 764 110
Q ss_pred --------CCCcEEEEeec--CHHHHHHHHHHHH
Q 012124 435 --------DDTCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 435 --------~~~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
.++.+|+|++. ++++++.+++.|+
T Consensus 377 ~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 377 EARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp HHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 04789999997 5567777666664
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=234.74 Aligned_cols=337 Identities=14% Similarity=0.104 Sum_probs=231.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-CCCCCC---CcCcHHHH--HHHH-HHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTP---NAGTLELR--SAIC-HKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~y~~---~~g~~~lr--~~ia-~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.|+|..+... .++.+++++.+.+.+. ..+|+. ..|...++ ++++ +++.+.+|.+ . ..++++|+++++
T Consensus 46 ~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~-~~v~~~sGs~a~ 120 (447)
T 3h7f_A 46 DTLEMIASENF--VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F-ANVQPHSGAQAN 120 (447)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHHH
T ss_pred CceeEecCCCC--CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c-eEEEeCCHHHHH
Confidence 45888654433 3888999988877532 223322 13555555 6666 7777777743 2 233377788899
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChH-H----HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYP-E----MARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~-~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.++++|||+|++++|+|.++. . .+...+..+++++++++ ++.+|++.|+++++ .++++|++++|+||++
T Consensus 121 ~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~ 199 (447)
T 3h7f_A 121 AAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THLIDMDAVRATALEFRPKVIIAGWSAYPRV 199 (447)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCSCCHHHHHHHHHHHCCSEEEEECSSCCSC
T ss_pred HHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCCcCHHHHHHHHHhcCCeEEEEcCCCCCCc
Confidence 9999999999999999999998732 1 12224567778887643 35699999999985 4788888889999987
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
. + +++|.++|++| |++||+|++|. ++.+.+.....+ . ...+++.|+||.+ +|+|.||++++++++
T Consensus 200 ~--~---l~~i~~l~~~~-g~lli~Dea~~~g~~~~g~~~~~~---~---~~di~~~s~sK~l--~G~~gG~i~~~~~~~ 265 (447)
T 3h7f_A 200 L--D---FAAFRSIADEV-GAKLLVDMAHFAGLVAAGLHPSPV---P---HADVVSTTVHKTL--GGGRSGLIVGKQQYA 265 (447)
T ss_dssp C--C---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST---T---TCSEEEEESSGGG--CCCSCEEEEECGGGH
T ss_pred c--C---HHHHHHHHHHc-CCEEEEECCchhhhhcCCCCCCCC---C---CCcEEEecCCcCC--CCCCeEEEEECHHHH
Confidence 6 3 88999999999 99999999974 344433211111 1 2237899999987 578999999999999
Q ss_pred HHHHHHhhhccCCC-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCCeecC-CCceEEEeee
Q 012124 321 AACNKIQSQFTSGA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSE-PQGAFYLFID 394 (470)
Q Consensus 321 ~~l~~~~~~~~~~~-~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~-~~~g~~~~~~ 394 (470)
+.+.........+. +...+.++..++... ...++++.++.+.++++.+.+.|.+. +|+.+.. +..++++|++
T Consensus 266 ~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (447)
T 3h7f_A 266 KAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVD 343 (447)
T ss_dssp HHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEE
T ss_pred HHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEE
Confidence 98887655444333 333345555555431 24467888888999999999999875 5777754 3455667888
Q ss_pred ccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCC--CCCCCCcEEEEeec------CHHHHHHHHHHHHHHHH
Q 012124 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGD--AFGDDTCIRISYAA------SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~--~f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~ 462 (470)
+... + .+...+. .++++.||.+. |+. ....++++|+++.. ++++++++++.|+++++
T Consensus 344 ~~~~-~---------~~~~~~~-~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~ 412 (447)
T 3h7f_A 344 LRDS-P---------LDGQAAE-DLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA 412 (447)
T ss_dssp CTTS-S---------CCHHHHH-HHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCC-C---------CCHHHHH-HHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 7532 0 1344444 45566699998 662 22346789998752 68999999999999886
Q ss_pred hh
Q 012124 463 TL 464 (470)
Q Consensus 463 ~~ 464 (470)
+.
T Consensus 413 ~~ 414 (447)
T 3h7f_A 413 TG 414 (447)
T ss_dssp SG
T ss_pred cc
Confidence 53
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=228.24 Aligned_cols=308 Identities=16% Similarity=0.189 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
++.+.+++.+.+... .|.+..+..++|+.+++++. .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~ 85 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNT 85 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTS
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 567788888877654 36677889999999999973 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+++...++..|++++.++++++ ++.+|++.|++++++++++|+ ++||||...+ +++|.++|+++ |+++|+|
T Consensus 86 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~-~~~li~D 157 (373)
T 3frk_A 86 FIATALAVSYTGAKPIFVEPDIR-TYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKY-NLKLIED 157 (373)
T ss_dssp CTHHHHHHHHHSCEEEEECEETT-TTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHH-TCEEEEE
T ss_pred cHHHHHHHHHcCCEEEEEecccc-ccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHc-CCEEEEE
Confidence 99999999999999999999753 467999999999998898887 7789999988 78899999999 9999999
Q ss_pred ccccccc-cCCCCcccccccCCCCCceEEEeccC--cccccc-cceeeEEEcC-HHHHHHHHHHhhhc------------
Q 012124 268 EIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMT-GWRLGYIAGP-KHFVAACNKIQSQF------------ 330 (470)
Q Consensus 268 d~~~~~~-~~~~~~~~~~~~~~~~~~~i~i~S~s--K~~~~~-G~r~G~~~~~-~~~~~~l~~~~~~~------------ 330 (470)
++|+... +++. .+..+ ..+.+.||+ |.++ + | +.|+++++ +++++.+.......
T Consensus 158 ~a~~~g~~~~~~---~~~~~-----~d~~~~S~~~~K~l~-~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~ 227 (373)
T 3frk_A 158 AAQAHGSLYKGM---KVGSL-----GDAAGFSFYPAKNLG-SLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGF 227 (373)
T ss_dssp CTTCTTCEETTE---ETTSS-----SSEEEEECCTTSSSC-CSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCC
T ss_pred CCcccCCEECCE---ecccc-----ccEEEEeCcCCCccC-ccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccc
Confidence 9998632 2221 11111 237788877 9886 4 5 47888876 56777777655421
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCceEEEeeeccCccCCcccCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
++..+.+...+....+ +.+++..++.++..+.+.+.|++++ +.+.. +.+....|..++-..
T Consensus 228 ~~~~~~~~aa~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------- 289 (373)
T 3frk_A 228 NSRLDELQAGFLRVKL-------KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS---------- 289 (373)
T ss_dssp BCCCCHHHHHHHHHHH-------HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE----------
T ss_pred cCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe----------
Confidence 1223444333332222 2345566666777888888888874 55432 222222222221110
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCC-----------C------------CCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFG-----------D------------DTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~-----------~------------~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
.+..++.+.|.++ ||.+.++.... . .+.+|+++.. +++|++..++.|+++..+
T Consensus 290 ~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 290 EKRDELQKYLNNN-GIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp SSHHHHHHHHHHT-TBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHC-CCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 1577888888766 99998765210 0 1479999986 999999999998876543
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=229.18 Aligned_cols=283 Identities=14% Similarity=0.163 Sum_probs=204.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~ 208 (470)
..++++.+++++ |. ++.|++++|+ +++..++.+++++||+|++++|+|+++... ++..|++++.++.+
T Consensus 116 ~~~l~~~lA~l~----g~---~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 116 TVVLEEKISALE----GA---ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHH----TC---SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred HHHHHHHHHHHh----CC---CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 346777777765 43 2456666665 999999999999999999999999987764 45689999999862
Q ss_pred CCCCCccCHHhHhhhccCCc-eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC
Q 012124 209 ISENFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 287 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~-~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~ 287 (470)
|++.|++++++++ ++|++++|+||||.+++ +++|+++|+++ |+++|+|++|....+. .++ .
T Consensus 188 -------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~-g~~livD~a~~~~~~~----~~~-~-- 249 (445)
T 1qgn_A 188 -------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPLNQ----KAL-A-- 249 (445)
T ss_dssp -------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTC----CTT-T--
T ss_pred -------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccC----Ccc-c--
Confidence 8999999998888 99999999999999999 88999999999 9999999999864321 111 1
Q ss_pred CCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 288 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+..+++.|+||.++..| .++||+++++++++.+...........+++...++...++. +....+.+.++
T Consensus 250 --~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~ 320 (445)
T 1qgn_A 250 --LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNST 320 (445)
T ss_dssp --TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHH
T ss_pred --cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHH
Confidence 245689999999997333 47999999999999888766655555666665554444432 33344555666
Q ss_pred HHHHHHHhccCCCC-eecCC----------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC
Q 012124 367 RDFLVKSFGELEGV-KMSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429 (470)
Q Consensus 367 ~~~l~~~L~~~~g~-~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p 429 (470)
++.+.+.|++.|++ .+..| ..|.++++.+++.. .+...+.+.|. ..++.+..
T Consensus 321 a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~----------~~~~~~l~~l~-~~~i~~s~ 389 (445)
T 1qgn_A 321 ALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL----------LTTAKFVDALK-IPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH----------HHHHHHHHHCS-SSEECSCC
T ss_pred HHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH----------HHHHHHHHhCC-CceEeccC
Confidence 78888888888776 44333 12444777886420 02345555432 23677777
Q ss_pred CCCCC----------------------C-CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 430 GDAFG----------------------D-DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 430 g~~f~----------------------~-~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
|..+. . ++.||||++. |+++++++.|++++++
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~--Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 444 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 76431 1 3689999994 4688888888888764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=223.86 Aligned_cols=302 Identities=18% Similarity=0.239 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
++++.+++.+.+... .|.+..+..++++.+++++. .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~ 84 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFT 84 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCc
Confidence 567788888877654 45577788999999999973 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+.+...++..|++++.++++++ .+.+|++.+++++++++++|+ |+||||...+ +++|.++|+++ |++||+|
T Consensus 85 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~-~~~li~D 156 (367)
T 3nyt_A 85 YVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKY-GIPVIED 156 (367)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCCBEEE
T ss_pred cHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHc-CCEEEEE
Confidence 99999999999999999999754 367999999999998898887 8889998888 88899999999 9999999
Q ss_pred cccccc-ccCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhh------------cc
Q 012124 268 EIYEHI-IYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------FT 331 (470)
Q Consensus 268 d~~~~~-~~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~------------~~ 331 (470)
++|+.. .+.+. .+..+ + .+++.|| +|.++.+|. .|+++. ++++.+.+...... .+
T Consensus 157 ~a~~~g~~~~~~---~~~~~----~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~ 227 (367)
T 3nyt_A 157 AAQSFGASYKGK---RSCNL----S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVN 227 (367)
T ss_dssp CTTTTTCEETTE---ETTSS----S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCB
T ss_pred CccccCCeECCe---eccCC----C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcC
Confidence 999852 23221 11111 1 4888887 899984476 899888 47788887775542 23
Q ss_pred CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-CCce---EE-EeeeccCccCCcccCC
Q 012124 332 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FY-LFIDFSTYYGSEAEGF 406 (470)
Q Consensus 332 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~g---~~-~~~~~~~~~~~~~~~~ 406 (470)
+..+.+.+.++...++. +++..++.++..+.+.+.|+++ ++.+.. +.+. ++ +++.++
T Consensus 228 ~~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 228 SRLDTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS----------
T ss_pred CCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC----------
Confidence 45666666655555543 2344455556666777777766 444322 1221 11 223332
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCC--------CC-C-----------CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDA--------FG-D-----------DTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~--------f~-~-----------~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++.+.|.++ ||.+.++.. |. . ...+||++.. ++++++..++.|++.
T Consensus 290 ----~~~~l~~~L~~~-GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ----NRESVQASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ----SHHHHHHHHHHH-TCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ----CHHHHHHHHHHC-CCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 567888888766 998887643 11 0 1368999886 899999999888654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=237.73 Aligned_cols=331 Identities=12% Similarity=0.067 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCC-------CCcEEEecChHHHHHHHHHHhcCC----
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSP---- 177 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~-------~~~i~it~g~~~al~~~~~~l~~~---- 177 (470)
+..+.+.+...+......|....+..++++.+++++.+.+|.+.+ ..++++|+|+++++..++.++..+
T Consensus 87 ~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~ 166 (486)
T 1js3_A 87 PAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRR 166 (486)
T ss_dssp HHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhh
Confidence 455777888887666667777777899999999999999997532 357899999999999888765321
Q ss_pred -----CC--------e--EEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCce------EEEEcCC
Q 012124 178 -----GD--------E--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCSP 236 (470)
Q Consensus 178 -----gd--------~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~------~i~l~~p 236 (470)
|| . |++++++|+++...++..|++++.+|++ +++.+|++.|+++++++++ +|++++|
T Consensus 167 ~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~ 244 (486)
T 1js3_A 167 LQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLG 244 (486)
T ss_dssp HHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 43 3 7889999999999999999999999985 4567999999999976553 7788999
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc-ccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
+||||.+-+ +++|+++|++| |+++++|++|+.+.+....... +..+. +-..++.+++|.++.| +++||+++
T Consensus 245 ~n~tG~~~~---l~~I~~la~~~-~~~lhvD~a~g~~~~~~~~~~~~~~g~~---~adsi~~~~hK~~~~p-~~~G~l~~ 316 (486)
T 1js3_A 245 TTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGVE---FADSFNFNPHKWLLVN-FDCSAMWV 316 (486)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTGG---GCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCCCCC---HHHHHHHHHHc-CCEEEEehhhHHHHHHCHHHHHHhcCcc---ccCeeEEchhhhcCCC-cceEEEEE
Confidence 999999877 99999999999 9999999999976543211111 11221 2235567899999744 89999998
Q ss_pred CHH-H-HHHHHHHhhhc--------------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 316 PKH-F-VAACNKIQSQF--------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 316 ~~~-~-~~~l~~~~~~~--------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
+++ . .+.+....... +.....+.+.++...+. .++++++.+++.++++++.+.
T Consensus 317 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~ 391 (486)
T 1js3_A 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAF 391 (486)
T ss_dssp SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 643 2 33321100000 00123445555554442 567888888899999999999
Q ss_pred hccCCCCeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHH
Q 012124 374 FGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTT 449 (470)
Q Consensus 374 L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~ 449 (470)
|++++|+++.. |..+++.| +++..- ....++.++|.+++.+.+.+ ..|...+++|++++. ++++
T Consensus 392 L~~~~~~~~~~~~~~~~v~f-~~~~~~----------~~~~~l~~~L~~~g~~~~~~-~~~~~~~~lRi~~~~~~~t~~d 459 (486)
T 1js3_A 392 VLQDPRFEVCAEVTLGLVCF-RLKGSD----------GLNEALLERINSARKIHLVP-CRLRGQFVLRFAICSRKVESGH 459 (486)
T ss_dssp HHHCTTEEECSCCCSSEEEE-EESSCH----------HHHHHHHHHHHHHTSCBCEE-EEETTEEEEEEECCCTTCCHHH
T ss_pred HhcCCCeEEeCCCceeEEEE-EecChH----------HHHHHHHHHHHhcCCEEEEE-EEECCEEEEEEEeCCCCCCHHH
Confidence 99988998864 56666444 554210 02467888887773343343 335446799999864 7899
Q ss_pred HHHHHHHHHHHHHhhCC
Q 012124 450 LQAAVERIKKGLLTLRP 466 (470)
Q Consensus 450 i~~~l~~l~~~l~~~~~ 466 (470)
+++++++|+++++++..
T Consensus 460 i~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 460 VRLAWEHIRGLAAELLA 476 (486)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999877644
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=227.78 Aligned_cols=285 Identities=14% Similarity=0.114 Sum_probs=200.2
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEE
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 204 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 204 (470)
+..+..++|+.+++++ |. ++++++++++++++++++ ++++||+|++++|+|++... .++..|++++.
T Consensus 53 ~~~~~~~lr~~la~~~----g~----~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~ 123 (393)
T 1n8p_A 53 QNPNRENLERAVAALE----NA----QYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF 123 (393)
T ss_dssp CCHHHHHHHHHHHHHT----TC----SEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE
T ss_pred CChhHHHHHHHHHHHh----CC----CcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE
Confidence 3445678899998885 32 245555666899999999 88999999999999986554 34567999999
Q ss_pred ecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC---CEEEEEeccccccccCCCCcc
Q 012124 205 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP---RLLVLSDEIYEHIIYAPATHT 281 (470)
Q Consensus 205 v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~---~~~iI~Dd~~~~~~~~~~~~~ 281 (470)
++++ | +.+++++++++++|++++|+||||.+++ +++|.++|++++ |+++|+|++|..+.+.
T Consensus 124 v~~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~----- 187 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS----- 187 (393)
T ss_dssp ESSH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----
T ss_pred eCCC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----
Confidence 9873 7 8899999889999999999999999998 888899998873 6999999999987653
Q ss_pred cccccCCCCCceEEEeccCccccccccee-eEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHH
Q 012124 282 SFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 359 (470)
Q Consensus 282 ~~~~~~~~~~~~i~i~S~sK~~~~~G~r~-G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 359 (470)
....+ +.++++.|+||.+|.+|+|+ ||+++ ++++++.+...........++..+.++...++. +...
T Consensus 188 ~~~~~----~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------~~~~ 256 (393)
T 1n8p_A 188 NPLNF----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLR 256 (393)
T ss_dssp CGGGG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHH
T ss_pred CHHHc----CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-------HHHH
Confidence 11222 46699999999999889999 99998 588999888776655556677766665555543 2333
Q ss_pred HHHHHHHHHHHHHHhccCCC-Ce-ecCC---------------C--c-eEEEeeeccCccCCcccCCCCCCCHHHHHHHH
Q 012124 360 VKAFRERRDFLVKSFGELEG-VK-MSEP---------------Q--G-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 419 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~g-~~-~~~~---------------~--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 419 (470)
.+...++++.+.+.|.+.+. +. +..| . . +..+++.+++.. .+...+...|
T Consensus 257 ~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~----------~~~~~~l~~l 326 (393)
T 1n8p_A 257 VRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA----------EAASKFASST 326 (393)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH----------HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH----------HHHHHHHhhC
Confidence 44445566666677766543 32 1111 1 1 445788886420 0344555544
Q ss_pred HHcCCEEEECCC----------CC------------C-CCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 420 LDKAQVALVPGD----------AF------------G-DDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 420 ~~~~gI~v~pg~----------~f------------~-~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+..++.+..|+ .+ + .++.||+|++. ++++++.+.+.|+++
T Consensus 327 -~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 327 -RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp -SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 23345444332 22 1 13689999998 556677777766654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=229.56 Aligned_cols=341 Identities=14% Similarity=0.121 Sum_probs=238.4
Q ss_pred hHHHH-HHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC--------CC-
Q 012124 109 PVLIA-EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PG- 178 (470)
Q Consensus 109 ~~~~~-~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~--------~g- 178 (470)
|..+. +.+...+......|....+..++++.+.+++.+.+|.+.+++++++|+|+++++..++.++.. +|
T Consensus 105 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~ 184 (504)
T 2okj_A 105 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 184 (504)
T ss_dssp HHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 44443 445544544455676667778889999999999889754478999999999999999888753 56
Q ss_pred ----C-eEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCC
Q 012124 179 ----D-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 179 ----d-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~ 244 (470)
+ .|++++++|+++...++..|. +++.+|.+ .++.+|++.|++++++ ++++|++++++||||.+.
T Consensus 185 ~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~ 262 (504)
T 2okj_A 185 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD 262 (504)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC
T ss_pred cccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC
Confidence 6 789999999999999998887 89999986 3567999999999965 588899999999999998
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC 323 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l 323 (470)
+ +++|+++|++| |+|+++|++|+.+.+....... .+.+.....+++.|++|.++.| .++|++++++ ++++..
T Consensus 263 ~---l~~I~~la~~~-g~~lhvD~a~~~~~~~~~~~~~--~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~ 335 (504)
T 2okj_A 263 P---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGC 335 (504)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHH
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhhHHHhCHhhHh--hcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHH
Confidence 8 88999999999 9999999999987653221111 1221113347788999999744 7899999876 455542
Q ss_pred HHHhhhccC---------------------CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 324 NKIQSQFTS---------------------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 324 ~~~~~~~~~---------------------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
......+.. ....+.+.++..++. .+.++++.++..++++++.+.|++++|+++
T Consensus 336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 410 (504)
T 2okj_A 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEM 410 (504)
T ss_dssp HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 211111110 013455555555553 456778888889999999999999889988
Q ss_pred cC---CCceEEEeeeccCccCCcccC----CCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEee---cCHHHHH
Q 012124 383 SE---PQGAFYLFIDFSTYYGSEAEG----FGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYA---ASLTTLQ 451 (470)
Q Consensus 383 ~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~---~~~~~i~ 451 (470)
.. |..+++.|...|......... ........++.+.|.+++.+.+.++ .+.. .+++|++++ .++++++
T Consensus 411 ~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~-~~~~~~~~lRis~~~~~~t~edi~ 489 (504)
T 2okj_A 411 VFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQ-PQGDKANFFRMVISNPAATQSDID 489 (504)
T ss_dssp SSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEE-EETTEEEEEEECCCCTTCCHHHHH
T ss_pred EecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEee-EECCceEEEEEEeCCCCCCHHHHH
Confidence 74 666776654444310000000 0000013567788887732444433 2322 368999997 3889999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
.++++|+++++++
T Consensus 490 ~~~~~l~~~~~~~ 502 (504)
T 2okj_A 490 FLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=228.40 Aligned_cols=335 Identities=13% Similarity=0.060 Sum_probs=240.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEE---EecChHHHHHHHHHHhcCC------
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL---VSNGAKQSILQAVLAVCSP------ 177 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~---it~g~~~al~~~~~~l~~~------ 177 (470)
.+++.+.+++.+.+......|...++..++++.+.+++.+.+|.+.++++++ +|+|+++++.+++.++..+
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3467888888888766555565666788999999999999999865466554 4899999999998887655
Q ss_pred --CC-----eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHH
Q 012124 178 --GD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 250 (470)
Q Consensus 178 --gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~ 250 (470)
|| +|++++++|..+...++..|++++.+|++. +++.+|++.|++++++++++|++++|+||||.+.+ ++
T Consensus 147 ~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~---l~ 222 (502)
T 3hbx_A 147 AEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFED---VK 222 (502)
T ss_dssp HTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCC---HH
T ss_pred hcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccC---HH
Confidence 77 999999999999999999999999999864 34679999999999999999999999999999999 77
Q ss_pred HHHHHHHhCC-----CEEEEEecccccccc---CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC-HHHHH
Q 012124 251 EIARIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVA 321 (470)
Q Consensus 251 ~l~~~~~~~~-----~~~iI~Dd~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~-~~~~~ 321 (470)
+|.++|++++ |+++++|++|+.+.. .+.... .+. ..+-.++..|.+|.++ .+.++||++.. ++.+.
T Consensus 223 ~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~---~~~-~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~ 297 (502)
T 3hbx_A 223 LLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW---DFR-LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLP 297 (502)
T ss_dssp HHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC---STT-STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSC
T ss_pred HHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc---ccC-CCCceEEEECcccccC-CCCCeEEEEEeCHHHhh
Confidence 7777777651 799999999986541 111111 111 1244567788899874 77889988764 33332
Q ss_pred HHHHHhhhc----------cCCC---ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC--C
Q 012124 322 ACNKIQSQF----------TSGA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--Q 386 (470)
Q Consensus 322 ~l~~~~~~~----------~~~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~ 386 (470)
........+ .+.. ..+.+.++...+. .+.+.++.++..++++++.+.|++++++++..+ .
T Consensus 298 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (502)
T 3hbx_A 298 EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-----HEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG 372 (502)
T ss_dssp GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS
T ss_pred HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 111110001 0111 2233444444332 345677778888888899999999977888755 4
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC---CCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF---GDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f---~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
.++ +++++++.. ..+..++.+.|.++ ||.+...... ....++|++++. +.++++.+++.|++++
T Consensus 373 ~~~-v~f~~~~~~---------~~~~~~l~~~L~~~-Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l 441 (502)
T 3hbx_A 373 VPL-VAFSLKDSS---------CHTEFEISDMLRRY-GWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVM 441 (502)
T ss_dssp SSE-EEEEESSCS---------SCCHHHHHHHHHTT-TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ceE-EEEEecCCC---------cCCHHHHHHHHHhC-CcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 444 666775420 01556888888765 8876432221 123589999986 8899999999999998
Q ss_pred HhhCC
Q 012124 462 LTLRP 466 (470)
Q Consensus 462 ~~~~~ 466 (470)
++++.
T Consensus 442 ~~l~~ 446 (502)
T 3hbx_A 442 RELDE 446 (502)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87643
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=222.09 Aligned_cols=282 Identities=16% Similarity=0.130 Sum_probs=195.3
Q ss_pred CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHH----HHHHcCCEEEEe
Q 012124 130 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 205 (470)
Q Consensus 130 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 205 (470)
.+...+|++.+++++ |. +..++++++++++.+++.+++++||+|++++|+|.++.. .++..|++++.+
T Consensus 81 ~p~~~~le~~lA~l~----g~----~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v 152 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLT----GA----LGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV 152 (430)
T ss_dssp CHHHHHHHHHHHHHH----TC----SEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHH----CC----CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 344566777777664 42 335666666799999999999999999999999998887 667899999999
Q ss_pred cCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccc
Q 012124 206 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 285 (470)
Q Consensus 206 ~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~ 285 (470)
+.+ |++.+++++++++++|++++|+||||.+++ +++|+++|+++ |+++|+|++|....+. .+. .
T Consensus 153 ~~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~-g~~livD~a~~~~~~~----~~~-~ 216 (430)
T 3ri6_A 153 DVM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAK-GIPLVVDTTMTPPYLL----EAK-R 216 (430)
T ss_dssp CTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTSCTTTC----CGG-G
T ss_pred CCC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccC----ChH-H
Confidence 863 899999999999999999999999999998 78899999999 9999999999853321 111 1
Q ss_pred cCCCCCceEEEeccCcccccccceeeEEEc---CHHH------------------HHHHHH-HhhhccCCCChHHHHHHH
Q 012124 286 LPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF------------------VAACNK-IQSQFTSGASSISQKAGV 343 (470)
Q Consensus 286 ~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~---~~~~------------------~~~l~~-~~~~~~~~~~~~~q~a~~ 343 (470)
.+..+++.|+||.++.+|..+|.+++ +..+ +..+.. .........+++....+.
T Consensus 217 ----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l 292 (430)
T 3ri6_A 217 ----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQS 292 (430)
T ss_dssp ----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred ----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 24569999999999756655554443 2222 222221 222333344554433332
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe-ecCCC----------------ceEEEeeeccCccCCcccCC
Q 012124 344 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQ----------------GAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~ 406 (470)
.. .+.+....++..++.+.+.+.|++.|+++ +..|. +|+.+|+++++..
T Consensus 293 ~~-------l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~------- 358 (430)
T 3ri6_A 293 LG-------LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKE------- 358 (430)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH-------
T ss_pred hh-------hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHH-------
Confidence 22 23345555666778888999998888875 44343 6646899997431
Q ss_pred CCCCCHHHHHHHHHHcCCEEEECCCCCC-----------------------CCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 407 GKIENSESLCRYLLDKAQVALVPGDAFG-----------------------DDTCIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----------------------~~~~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
+...|.+.|. ..++.+.+|..+. .++.||||++. +.++ .++.|++++
T Consensus 359 ----~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~d---l~~dl~~al 429 (430)
T 3ri6_A 359 ----ASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIED---LKEDILQAL 429 (430)
T ss_dssp ----HHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHH---HHHHHHHHH
T ss_pred ----HHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH---HHHHHHHhh
Confidence 4566666653 3467777777654 13689999997 4444 444444443
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-29 Score=249.18 Aligned_cols=339 Identities=14% Similarity=0.100 Sum_probs=232.2
Q ss_pred hcCCCeEEccCCCCC--CC-ChHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 91 QAGVSVIRLAAGEPD--FD-TPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 91 ~~~~~~i~l~~g~~~--~~-~~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.+|+.+|||..|... +. .++.+.+++.+++.+.. ..| +.....+|.+.|++++ + ..+++++++++++|
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~----p---~~~~v~~~nSGseA 168 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRF----P---SIDLVRFTNSGTEA 168 (465)
Confidence 478889999998753 32 27889999998887642 233 4444455666666554 2 34789999999999
Q ss_pred HHHHHHHhc--CCCCeEEEcCCCCCChHHHHH----HcCC--EEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcC
Q 012124 167 ILQAVLAVC--SPGDEVIIPAPFWVSYPEMAR----IADA--TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCS 235 (470)
Q Consensus 167 l~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~ 235 (470)
+..+++... ..+|.|++.+++|+++...+. ..|. .++.+|. .|++.|+++++ +++++|++..
T Consensus 169 ~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~ep 241 (465)
T 2yky_A 169 NLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILVEP 241 (465)
Confidence 999988753 345999999999988765433 1233 2233332 27899999997 5788887765
Q ss_pred CCCCcccC-CCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~-~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
.+++||.. .+.+.+++|.++|++| |+++|+||+|. +.++. ...++. .+....+.||||.+| .|+|+||++
T Consensus 242 v~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~-~r~g~-----~~a~~~-~gv~pDi~t~sK~lg-~G~piG~v~ 312 (465)
T 2yky_A 242 MLGAGGCVPAERAFLDLLRAEASRC-GALLIFDEVMT-SRLSG-----GGAQEM-LGISADLTTLGKYIG-GGMSFGAFG 312 (465)
Confidence 56669964 4688999999999999 99999999999 74421 111211 122344668999998 699999999
Q ss_pred cCHHHHHHHHH-----HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CCeecCCC
Q 012124 315 GPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQ 386 (470)
Q Consensus 315 ~~~~~~~~l~~-----~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~ 386 (470)
+++++++.+.. .....+++.+++.|.++.+.|+.- ++ ..+.++++++.+++.+.|+++. ++....+.
T Consensus 313 ~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g 387 (465)
T 2yky_A 313 GRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQI---YT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTG 387 (465)
Confidence 99999998876 234467788999999998888642 11 2344555556666666665531 23233345
Q ss_pred ceEEEeeeccC-ccCCcccCC--CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFST-YYGSEAEGF--GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.|.++|+.+++ .+. ..... ........+++.|+++ ||.+.|+. |.. +++..+++++++++++|++++++
T Consensus 388 ~G~~~~i~~~~~~~~-~~~~~~~~d~~~~~~~~~~ll~~-GV~v~p~~-~~~-----~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 388 LGSLGTIHFSRAPIR-SAGDVRAADQQLKELFFFHMLRK-GIYLAPRG-MYA-----LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 57778888764 100 00000 0001245788888865 99999976 321 77777999999999999999987
Q ss_pred hCC
Q 012124 464 LRP 466 (470)
Q Consensus 464 ~~~ 466 (470)
++.
T Consensus 460 ~~~ 462 (465)
T 2yky_A 460 QRA 462 (465)
Confidence 754
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=224.10 Aligned_cols=340 Identities=16% Similarity=0.177 Sum_probs=224.8
Q ss_pred HHHHHHHHHHhcCCC--eEEccCCCCCCCChHHHHHHHH--HHHHcCCCCCC--CCcCcHHHHHHHHHHHHHHcCCCCCC
Q 012124 81 AITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGI--NAIREGFTRYT--PNAGTLELRSAICHKLKEENGLSYTP 154 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~--~i~l~~g~~~~~~~~~~~~a~~--~~~~~~~~~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~ 154 (470)
++.+....+...+.. ...++.|.++...|+.+.+.+. +.... ...|. ..+|..++.+.+.+.+.+.+|. ++
T Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~ 125 (438)
T 1wyu_A 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA-YTPYQPEVSQGVLQATFEYQTMIAELAGL--EI 125 (438)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC-CSCCSGGGCHHHHHHHHHHHHHHHHHHTS--SE
T ss_pred HHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc-CCCCcchhhhhHHHHHHHHHHHHHHHhCC--Cc
Confidence 444444555444432 3467778887777777644442 22222 22231 1567777777777777777785 56
Q ss_pred CcEEEecChHHHHHHHHHH-hcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCce
Q 012124 155 DQILVSNGAKQSILQAVLA-VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSR 229 (470)
Q Consensus 155 ~~i~it~g~~~al~~~~~~-l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 229 (470)
+++++++|++.+.+.+..+ ..++||+|++++++|+.+...+ +..|++++.++.. ++.+|++. ++++++
T Consensus 126 ~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~---~~~~d~~~----i~~~t~ 198 (438)
T 1wyu_A 126 ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE---GGRTPLPE----VGEEVG 198 (438)
T ss_dssp ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB---TTBCCCCC----CCTTEE
T ss_pred cceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc---CCccCHHH----hCCCeE
Confidence 7899999999443433333 2479999999999999988655 4489999999972 23577766 667899
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecc-ccccccCCCCcccccccCCCCCceEEEeccCccc----c
Q 012124 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF----A 304 (470)
Q Consensus 230 ~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~----~ 304 (470)
+|++++| ||||.+.+ +++|+++|+++ |+++|+|-. .+ ++....+ ..+ +..+++.| +|.| +
T Consensus 199 ~v~i~~p-n~tG~~~~---l~~i~~la~~~-g~~vivd~d~~a---~g~~~~~--~~~----g~D~~~~s-~kk~~~~~~ 263 (438)
T 1wyu_A 199 AVVVQNP-NFLGALED---LGPFAEAAHGA-GALFVAVADPLS---LGVLKPP--GAY----GADIAVGD-GQSLGLPMG 263 (438)
T ss_dssp EEEEESS-CTTSBCCC---HHHHHHHHHHT-TCEEEEECCTTG---GGTBCCH--HHH----TCSEEEEE-CTTTTCCCG
T ss_pred EEEEECC-CCCeEEec---HHHHHHHHHHc-CCEEEEEechhh---ccCcCCC--ccC----CCCEEEEC-CcccCCCcc
Confidence 9999999 99999998 88999999999 999996622 21 1110111 112 23366666 5654 3
Q ss_pred cccceeeEEEcCHHHHHHHHH----------------------------HhhhccCCC-ChHHHHHHHHHHhcCCCChHH
Q 012124 305 MTGWRLGYIAGPKHFVAACNK----------------------------IQSQFTSGA-SSISQKAGVAALGLGYAGGEV 355 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~----------------------------~~~~~~~~~-~~~~q~a~~~~l~~~~~~~~~ 355 (470)
+.|.++||+++++++++.+.. .....+.++ +.+...++..++... ..+.
T Consensus 264 ~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~--~~~g 341 (438)
T 1wyu_A 264 FGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL--GPEG 341 (438)
T ss_dssp GGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH--HHHH
T ss_pred CCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh--CHHH
Confidence 567789999999887765411 011111111 222222222223210 1455
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE--ECCCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL--VPGDAF 433 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v--~pg~~f 433 (470)
++++.++++++++++.+.|++++|+++..+. .+|.++.+.... +..+++++|.++ ||.+ .++..|
T Consensus 342 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~L~~~-gi~v~~~~~~~~ 408 (438)
T 1wyu_A 342 LREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALPK-----------DPEAVRRALAER-GFHGATPVPREY 408 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECSS-----------CHHHHHHHHHHT-TCCCCEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCCC-----------CHHHHHHHHHHC-Cceecccccccc
Confidence 7888899999999999999999899887653 333333332111 678899998876 9988 677655
Q ss_pred CCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 434 GDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 434 ~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
. ++++|++++. +++++++++++|++++
T Consensus 409 ~-~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 409 G-ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp C-SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred C-CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 4 7899999995 8899999999998764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=231.84 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=197.7
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
+.....++++.+++ + |. + +++++|+|+++++.+++++++++||+|++++|+|.++...+...|++++.++..
T Consensus 55 ~~~~~~~~~~~la~-~----g~--~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SD--Y-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TT--E-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred cchHHHHHHHHHHh-c----CC--C-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 44455666666665 4 42 3 689999999999999999999999999999999999999999999999999883
Q ss_pred CCCC----CccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccc
Q 012124 209 ISEN----FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSF 283 (470)
Q Consensus 209 ~~~~----~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~ 283 (470)
.+++ +.+|++.| ++++++++++++ +|+||.+++ +++|+++|++| |++||+|++|+. +.|.+. ..+.
T Consensus 127 ~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~-~~~livDea~~~~~~f~~~-~~~~ 197 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQL-NIPVLIDEAHGAHFGLQGF-PDST 197 (446)
T ss_dssp ECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHT-TCCEEEECTTCTTTTSTTS-CCCG
T ss_pred eccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhc-CCeEEEcchhhhhhccCCC-CCCh
Confidence 2332 45788887 456789999988 566999999 88999999999 999999999986 445443 2233
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEEcCHHHHH--HHHHHhhhc-cCCCChHHHHHHHHHHhcCCCChHH-HHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEV-VSKM 359 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~--~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~-~~~~ 359 (470)
..+. ..+++.|+||.++ ++.++||+++++++++ .+......+ ..+++.....++..+++. .... .+++
T Consensus 198 ~~~g----~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~---l~~~g~~~~ 269 (446)
T 2x3l_A 198 LNYQ----ADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF---YKTYDSTLF 269 (446)
T ss_dssp GGGT----CSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH---HHHCCCHHH
T ss_pred HHcC----CCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH---HHHhCHHHH
Confidence 3222 2499999999764 4456899999877654 333222222 333444333333222221 0110 1113
Q ss_pred HHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCCCCCCCCc
Q 012124 360 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGDAFGDDTC 438 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~-pg~~f~~~~~ 438 (470)
.++.++..+.+.+. |+.+..+..+.++|+.++.. +..++.+.|.++ ||.+. +|. ++
T Consensus 270 ~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~~------------~~~~l~~~L~~~-GI~v~~~g~-----~~ 326 (446)
T 2x3l_A 270 FAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEGF------------TGHDIQNWFMNA-HIYLELADD-----YQ 326 (446)
T ss_dssp HHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTTS------------CHHHHHHHHHHT-TEEESEECS-----SC
T ss_pred HHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCCc------------CHHHHHHHHHHC-CCEEEecCC-----CE
Confidence 44444444444444 66666555555688888732 678898888877 99987 543 68
Q ss_pred EEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 439 IRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 439 iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+|++++. +++++ +++++|+++++++.
T Consensus 327 iRi~~~~~~t~e~i-~l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 327 ALAILPLWHHDDTY-LFDSLLRKIEDMIL 354 (446)
T ss_dssp EEEECCCCCTTCCC-CHHHHHHHHHTCCC
T ss_pred EEEEeecCCCHHHH-HHHHHHHHHHHhhc
Confidence 9999986 77889 99999999987663
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=222.15 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC------------
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 176 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~------------ 176 (470)
+..+.+.+..++......|....+..++++.+++++.+.+|.+..++.+++|+|+++++..++.++.+
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~ 188 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA 188 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 34456777778777778898888999999999999999999876678999999999999988877654
Q ss_pred --CCCeEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcCCCCCcccCCC
Q 012124 177 --PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 177 --~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~p~nPtG~~~s 245 (470)
+++.|++++++|+++...++..|+ +++.++.+. ++.+|++.|+++++++ +++|+++.++||||.+-+
T Consensus 189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~ 266 (511)
T 3vp6_A 189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP 266 (511)
T ss_dssp GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence 578999999999999999999998 899999863 4679999999999654 788889999999999977
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACN 324 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l~ 324 (470)
+++|+++|++| |+|+++|++|+........... .+.+...-.+++.+++|.++.| ..+|+++.+. ++++...
T Consensus 267 ---l~~I~~ia~~~-~~~lhvD~a~~~~~~~~~~~~~--~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~ 339 (511)
T 3vp6_A 267 ---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCN 339 (511)
T ss_dssp ---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEEccchhhHhhChhhhh--hccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHh
Confidence 89999999999 9999999999875442211111 1111123346778999998744 6788887754 3444432
Q ss_pred HHhhhc-----------------cC-C---CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 325 KIQSQF-----------------TS-G---ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 325 ~~~~~~-----------------~~-~---~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.....+ .. + ...+...++..++ +.++++++.++..++.+++.+.|++.||+++.
T Consensus 340 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~-----g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~ 414 (511)
T 3vp6_A 340 QMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK-----GTVGFENQINKCLELAEYLYAKIKNREEFEMV 414 (511)
T ss_dssp CCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEES
T ss_pred ccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 111000 00 0 1233333333333 25778889999999999999999998899886
Q ss_pred C---CCceEEEeeeccCccCCcccCC----CCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHH
Q 012124 384 E---PQGAFYLFIDFSTYYGSEAEGF----GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAA 453 (470)
Q Consensus 384 ~---~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~ 453 (470)
. |..+++.|...|.......... +......++.++|.+++.+.+......+..+++|++++. +.++|+.+
T Consensus 415 ~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~l 494 (511)
T 3vp6_A 415 FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFL 494 (511)
T ss_dssp SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHH
T ss_pred ecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHH
Confidence 5 5566644433343210000000 000012367888888743444321111122479999953 88999999
Q ss_pred HHHHHHHHHhh
Q 012124 454 VERIKKGLLTL 464 (470)
Q Consensus 454 l~~l~~~l~~~ 464 (470)
++.|+++-+.+
T Consensus 495 l~~i~~~~~~~ 505 (511)
T 3vp6_A 495 IEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99998876544
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=233.09 Aligned_cols=339 Identities=12% Similarity=0.036 Sum_probs=228.0
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
+|+.+|||..|... +.. ++.+.+++.+++.. ....|+. ....+|++.+++.+.+..+ ...++|++++|++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGs 137 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGS 137 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence 57789999988754 333 78899999887532 1123432 3457899999998776544 3567999999999
Q ss_pred HHHHHHHHHhc--------C-----------------CC---CeEEEcCCCCCChHHHH-HHcCCE-------------E
Q 012124 165 QSILQAVLAVC--------S-----------------PG---DEVIIPAPFWVSYPEMA-RIADAT-------------P 202 (470)
Q Consensus 165 ~al~~~~~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~-~~~g~~-------------~ 202 (470)
+|++.+++.+. . || +.|++.+++|+++.... ...|.. .
T Consensus 138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 99999998773 1 46 89999999999977654 333321 1
Q ss_pred EEecCcC---CCC--C-----ccCHHhHhhhccC------CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEE
Q 012124 203 VILPTRI---SEN--F-----LLDPKVLESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 203 ~~v~~~~---~~~--~-----~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
+++|... ... + ..|++.|++++++ ++++|++...+|+||. ..+.+.+++|.++|++| |+++|
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~-g~lli 296 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFL 296 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh-CCEEE
Confidence 1222110 000 0 1268899999865 7888888777888996 57899999999999999 99999
Q ss_pred EeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 012124 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 345 (470)
Q Consensus 266 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~ 345 (470)
+||+|.++.+.+. ...+..+.- ...+.+.||||.+ +.| ||++ ++++. .+.......+++.+++.|.++.++
T Consensus 297 ~DEv~~g~g~~g~-~~~~~~~gv--~~~~Di~t~sK~~-l~G---G~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aa 367 (472)
T 1ohv_A 297 VDEVQTGGGSTGK-FWAHEHWGL--DDPADVMTFSKKM-MTG---GFFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEV 367 (472)
T ss_dssp EECTTTTTTTTSS-SSGGGGGCC--SSCCSEEEECGGG-SSE---EEEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHH
T ss_pred EeCcccCCCCCCC-chhccccCC--CCCCCEEEEcccc-ccC---CccC-chhhc-ccccccccCccCccHHHHHHHHHH
Confidence 9999987654432 112222210 0012255899995 345 7776 65542 122223345567799999998888
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHH
Q 012124 346 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 420 (470)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 420 (470)
|+.- .+ ..+.++++++++++.+.|+++ ++ +....+. |.++++++++.. +...+++.|+
T Consensus 368 l~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~-g~~~~~~~~~~~-----------~~~~~~~~l~ 430 (472)
T 1ohv_A 368 INII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-GTFCSFDTPDES-----------IRNKLISIAR 430 (472)
T ss_dssp HHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-TTEEEEECSSHH-----------HHHHHHHHHH
T ss_pred HHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCC-ceEEEEEeCChh-----------HHHHHHHHHH
Confidence 8631 11 234566666777776666553 43 4333444 444666775421 3567888888
Q ss_pred HcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 421 DKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 421 ~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
++ ||.+.|+. .++||++++. +++++++++++|++++++++
T Consensus 431 ~~-Gv~~~~~g----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 472 (472)
T 1ohv_A 431 NK-GVMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADFK 472 (472)
T ss_dssp HT-TEECEEET----TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HC-CeEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 65 99999852 4789997764 99999999999999988653
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=220.42 Aligned_cols=300 Identities=12% Similarity=0.128 Sum_probs=219.0
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChH--HHHHHcC--CEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIAD--ATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g--~~~~~v~~~ 208 (470)
..++.+.+++.+.+.+|.+ +.|++|+|++++++.++.. +.+||+|++.+++|+++. ..++..| .+++.++.+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecc
Confidence 3467777777777777753 6899999999999998765 479999999999987754 3455556 478888775
Q ss_pred CCC------C-CccCHHhHhhhcc-CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 209 ISE------N-FLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 209 ~~~------~-~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
..+ . ..+|++.++++++ +++++|++++++||||.+++.+++++|.++|++| |+++|+|++++ . + ..
T Consensus 109 ~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-~~~li~D~~~~-g---~-~~ 182 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVIDCIAS-G---C-VW 182 (379)
T ss_dssp ESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-TCEEEEECTTC-T---T-CC
T ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-CCEEEEEeccc-C---C-cc
Confidence 311 1 1479999999995 4899999999999999999999999999999999 99999999975 2 1 11
Q ss_pred ccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-------------------h---hccCCCChHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------------S---QFTSGASSIS 338 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-------------------~---~~~~~~~~~~ 338 (470)
..+.. .+..+++.|++|.++ .+.++|++++++++++.+.... . .+.++++...
T Consensus 183 ~~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~ 257 (379)
T 3ke3_A 183 LDMKE----LGIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDS 257 (379)
T ss_dssp CCHHH----HTCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHH
T ss_pred ccccc----cCCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHH
Confidence 12221 234588999999986 4456899999999888775311 0 0123567777
Q ss_pred HHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecCCC---ceEEEeeeccCccCCcccCCCCCCCHHH
Q 012124 339 QKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSES 414 (470)
Q Consensus 339 q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (470)
+.++.++|+. ..+ .+++++++++++++++.+.|+++ |+++..+. .+....+..++ ....
T Consensus 258 ~~a~~aal~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-------------~~~~ 320 (379)
T 3ke3_A 258 LRQFRDAILE---AKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-------------DDMH 320 (379)
T ss_dssp HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-------------HHHH
T ss_pred HHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-------------cchH
Confidence 7777777764 122 26788888999999999999888 77765443 23223333321 1122
Q ss_pred HHHHHHHcCCEEEECCCCCCC-----CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 415 LCRYLLDKAQVALVPGDAFGD-----DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 415 l~~~L~~~~gI~v~pg~~f~~-----~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
+.+.|.+ +||.+.+|..+.. .+.+|++++. ++++|++++++|+++++++.
T Consensus 321 ~~~~L~~-~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 321 KGSAFAE-AGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp SSHHHHH-TTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 2455554 5999999976542 5789999985 88999999999999998764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-25 Score=214.80 Aligned_cols=321 Identities=11% Similarity=0.086 Sum_probs=223.6
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHH-HHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cC
Q 012124 99 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI-CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CS 176 (470)
Q Consensus 99 l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~i-a~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~ 176 (470)
+..+.|++++++.+.+++.+.+..+...+ ......+|++++ ++++ | ..+++++++|+++++.+++.++ ++
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~~~~-~~~~~~~l~~~~~a~~~----g---~~~~~v~~~sgt~al~~al~~l~~~ 76 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHIYTN-YGPINQRFEQTIMSGFF----Q---NRGAVTTVANATLGLMAAIQLKKRK 76 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTCCSS-SCHHHHHHHHHHHHHTS----T---TCSEEEEESCHHHHHHHHHHHHSCT
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCCccc-CCHHHHHHHHHHHHHHh----C---CCCeEEEeCCHHHHHHHHHHHcCCC
Confidence 45668999999999999999988765331 134578899999 8875 3 1568999999999999999998 89
Q ss_pred CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCC--ceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEK--SRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~--~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
|||+|++++|+|+.+...++..|++++.+++++ +++.+|++.+++++ +++ +++|+ |+||||...+ +++|.
T Consensus 77 ~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~i~ 149 (377)
T 3ju7_A 77 KGKYALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEEYE 149 (377)
T ss_dssp TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHHHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHHHH
Confidence 999999999999999999999999999999974 45779999999988 556 88776 7789999988 77888
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhhc
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF 330 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~ 330 (470)
++|+ + |++||+|++|+...... ... +.. ....+.+.|| +|.++ +| +.|+++. +++++++++.++...
T Consensus 150 ~la~-~-~~~vi~D~a~a~g~~~~--~~~---~g~-~~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g 219 (377)
T 3ju7_A 150 ELEK-K-GVPVVVDAAPGFGLMNG--GMH---YGQ-DFSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFG 219 (377)
T ss_dssp HHHH-T-TCCBEEECTTCTTCEET--TEE---TTT-TCSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTT
T ss_pred HHHh-c-CCEEEEECCCccCCeEC--CEe---ccC-CCCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcC
Confidence 9999 9 99999999998532211 011 100 0112445555 69997 45 5777775 577888887765522
Q ss_pred ------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC--eecCCCc--eE--EEe
Q 012124 331 ------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV--KMSEPQG--AF--YLF 392 (470)
Q Consensus 331 ------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--~~~~~~~--g~--~~~ 392 (470)
.+..+.+.+.++...++. ++...++.+++++.+.+.|++++++ .+....+ .+ |+.
T Consensus 220 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 292 (377)
T 3ju7_A 220 FDTNRECTMMGFNCKMSEYAAAIGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMP 292 (377)
T ss_dssp BCTTSCBCSSCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEE
T ss_pred CCCCCceeeccccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEE
Confidence 344566655555454542 3444445555666666677666543 2222111 12 223
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC--C------CC-------------CCcEEEEeec--CHHH
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA--F------GD-------------DTCIRISYAA--SLTT 449 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~--f------~~-------------~~~iRls~~~--~~~~ 449 (470)
+.+++.. +.+++.+.|.++ ||.+..+.. . .. ...+||++.. ++++
T Consensus 293 ~~~~~~~-----------~~~~l~~~L~~~-gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~d 360 (377)
T 3ju7_A 293 ILCPEEV-----------RNKQVIEDLKKQ-KIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEI 360 (377)
T ss_dssp EECCTTS-----------CHHHHHHHHHTT-TBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHH
T ss_pred EEeCChh-----------hHHHHHHHHHHC-CCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHH
Confidence 4454321 477888888655 998887652 1 00 1369999886 8999
Q ss_pred HHHHHHHHHHHHHh
Q 012124 450 LQAAVERIKKGLLT 463 (470)
Q Consensus 450 i~~~l~~l~~~l~~ 463 (470)
++..++.|++++.+
T Consensus 361 i~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 361 VEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887764
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=214.19 Aligned_cols=213 Identities=12% Similarity=0.127 Sum_probs=161.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 208 (470)
..++++.+++++ |. +++++++|+++++.+++.+++++||+|++++|.|++....+ +..|+++..++.+
T Consensus 84 ~~~le~~lA~l~----g~----~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 84 HFSLQQAMCELE----GG----AGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp HHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 455777777665 42 36778889999999999999999999999999999877654 4579999988752
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCccccccc
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
|++.|++++++++++|++++|+||||.+++ +++|+++|++ + |+++|+|++|+...+. .++ .
T Consensus 156 -------d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~-g~~livD~a~a~~~~~----~p~-~- 218 (415)
T 2fq6_A 156 -------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVLF----KAL-D- 218 (415)
T ss_dssp -------CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTSS----CGG-G-
T ss_pred -------CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcC-CCEEEEECCCcccccC----Ccc-c-
Confidence 889999999999999999999999999999 8899999999 9 9999999999864321 122 1
Q ss_pred CCCCCceEEEeccCcccccccce-eeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+..+++.|++|.++.+|.+ .||+++++++++.+...........++..+.++...++ .+....+...+
T Consensus 219 ---~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~-------~l~~r~~~~~~ 288 (415)
T 2fq6_A 219 ---FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLR-------TLGVRLRQHHE 288 (415)
T ss_dssp ---GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred ---cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh-------HHHHHHHHHHH
Confidence 24569999999999867654 69999998888888776654454556654444333333 33444455566
Q ss_pred HHHHHHHHhccCCCC
Q 012124 366 RRDFLVKSFGELEGV 380 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~ 380 (470)
+.+.+.+.|++.|.+
T Consensus 289 n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQV 303 (415)
T ss_dssp HHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHcCCCe
Confidence 677777777665443
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-25 Score=223.46 Aligned_cols=329 Identities=12% Similarity=0.134 Sum_probs=229.7
Q ss_pred ChHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh----c-------
Q 012124 108 TPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV----C------- 175 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l----~------- 175 (470)
.++.+.+++.....+ ....|....+..++.+.+.+++.+.+|.+ ..+++++|+|+++++..++.++ +
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~ 190 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGHS 190 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccc
Confidence 367777776555443 34456555677889999999999888864 3379999999999999888873 2
Q ss_pred --CC------CC-eEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccCC----ce--EEEEcCCC
Q 012124 176 --SP------GD-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK----SR--LLILCSPS 237 (470)
Q Consensus 176 --~~------gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~--~i~l~~p~ 237 (470)
.+ || .|++++++|.++...++..|. +++.+|++ .++.+|++.|+++++++ ++ +|+++.++
T Consensus 191 ~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~ 268 (497)
T 2qma_A 191 IQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGT 268 (497)
T ss_dssp HHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred hhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCC
Confidence 13 46 899999999999999988876 79999986 35679999999998643 34 77788899
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
||||...+ +++|+++|++| |+++++|++|+.+.+... ... .+.+.....+++.|++|.++ .+.++|++++++
T Consensus 269 ~~tG~~~~---l~~I~~l~~~~-~~~l~vD~a~~~~~~~~~-~~~--~~~gi~~~D~i~~s~hK~l~-~p~~~G~l~~~~ 340 (497)
T 2qma_A 269 TDHGAIDD---LDFIADMAVKH-DMWMHVDGAYGGALILSS-HKS--RLKGVERAHSISVDFHKLFY-QTISCGALLVND 340 (497)
T ss_dssp TTTCCBCC---HHHHHHHHHHH-TCEEEEEETTGGGGGGST-TGG--GGTTGGGCSEEEEETTTTTC-CCSSCEEEEESC
T ss_pred CCCCCCCC---HHHHHHHHHHc-CCEEEEehhhhHHHHhCc-chH--hhcCcccCCEEEEcchhccC-CCcceEEEEEeC
Confidence 99999888 88999999999 999999999998665332 110 11211133477889999887 447999999764
Q ss_pred H-HHHHHHHHhhhccCC----C-------------ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 318 H-FVAACNKIQSQFTSG----A-------------SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 318 ~-~~~~l~~~~~~~~~~----~-------------~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
+ .++.+.....+.... + ..+.+.++...+ ..+.++++.++..++++++.+.|+++++
T Consensus 341 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~~ 415 (497)
T 2qma_A 341 KSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV-----GPKALGDMYDHLLAQTLEVADMIRTNDQ 415 (497)
T ss_dssp GGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3 333221100000000 1 112222223332 2567788888889999999999999888
Q ss_pred Ceec-CCCceEEEeeeccCccCCcccCCCCCCC----HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee---cCHHHHH
Q 012124 380 VKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIEN----SESLCRYLLDKAQVALVPGDAFGDDTCIRISYA---ASLTTLQ 451 (470)
Q Consensus 380 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~---~~~~~i~ 451 (470)
+++. .+..++ +++++.+.- .+ ..++.+.|.++ |+.+.++..+...+++|+++. .++++++
T Consensus 416 ~~~~~~~~~~~-v~f~~~~~~----------~~~~~l~~~l~~~l~~~-G~~~~~~~~~~g~~~lRis~~~~~~t~edi~ 483 (497)
T 2qma_A 416 FELLAEPSLST-VLFRATHET----------ADLDELNKALRLEALTR-GIAVLGETIVDGKTALKFTILNPCLTTSDFE 483 (497)
T ss_dssp EEECSCCSSSE-EEEEECCSS----------SCHHHHHHHHHHHHHHH-TSCBCEEEEETTEEEEEEECCCTTCCHHHHH
T ss_pred eEEEcCCCceE-EEEEEcCCc----------cCHHHHHHHHHHHHHhC-CCEEEEeeEECCEEEEEEEecCCCCCHHHHH
Confidence 8874 455565 555664320 01 23566667665 787766554544568999984 2899999
Q ss_pred HHHHHHHHHHHhh
Q 012124 452 AAVERIKKGLLTL 464 (470)
Q Consensus 452 ~~l~~l~~~l~~~ 464 (470)
+++++|+++++++
T Consensus 484 ~~~~~l~~~~~~~ 496 (497)
T 2qma_A 484 SLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=222.90 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=212.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChH-HHHHHHHHHhcC--CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 209 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~-~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 209 (470)
..++.+.+.+++.+.+|.+ ++ +++|+|++ .++.+++.++.. +|+.|++.++.|+.+...++..|++++.++..+
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence 5667788888888888853 34 99999999 455545555433 678899999999999999999999999998743
Q ss_pred -CCCCccCHHhHhhhc-c----CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc
Q 012124 210 -SENFLLDPKVLESKL-T----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 283 (470)
Q Consensus 210 -~~~~~~d~~~l~~~l-~----~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~ 283 (470)
++++.+|++.|++++ + .++.+|++++|+||||.+.+ +++|.++|+++ |+++++|++|+.+.++. .....
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~-g~~v~vD~A~~~~~~g~-~~~~~ 282 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYY-LEKLK 282 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHH-HHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCcEEEECcchHHHHHh-hHHHH
Confidence 345679999999999 4 36777778999999999988 88899999999 99999999998754321 00111
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
..+.. +..+++.|++|.++ .+.++||+++ ++++++.+...........+.+.+.++...+. .+.++++.++
T Consensus 283 ~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~ 354 (456)
T 2z67_A 283 KAFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKN 354 (456)
T ss_dssp HHHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HhhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 11211 23367889999874 6789999999 57787776332211111122444444444442 4567888899
Q ss_pred HHHHHHHHHHHhccCC---CCeecCCCceEEEeeec--cCccCCcccCCCCCCCHHHHHHHHHHcCCE---EEE------
Q 012124 363 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQV---ALV------ 428 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI---~v~------ 428 (470)
+.++++++.+.|++++ |+.+..+. ++ +++.+ ++ ...++.+.|.++ || .+.
T Consensus 355 ~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~-------------~~~~l~~~L~~~-gi~~~rv~~~~g~f 418 (456)
T 2z67_A 355 QKNSKKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS-------------DPVEIAAKLYNL-RVTGPRGIKKTDHF 418 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS-------------CHHHHHHHHHHT-TEESCEEECTTCHH
T ss_pred HHHHHHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc-------------HHHHHHHHHHHc-CCCcceEEeecCcc
Confidence 9999999999998875 77777666 44 55566 32 246788888766 54 443
Q ss_pred CCCCCC--CCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 429 PGDAFG--DDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 429 pg~~f~--~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+|..|. ..+++|++++. +++++++++++|++++
T Consensus 419 ~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 419 GNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 233332 24799999984 8999999999998754
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=205.94 Aligned_cols=306 Identities=13% Similarity=0.145 Sum_probs=214.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-------cCCCCe
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-------CSPGDE 180 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-------~~~gd~ 180 (470)
.++.+++++.+.+... .|.+..+..++++.+++++. . +++++++++++++..++.++ +++||+
T Consensus 13 ~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~----~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~ 82 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFAKTFG----S----KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDE 82 (390)
T ss_dssp CCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHT----C----SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCE
T ss_pred CCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHC----C----CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCE
Confidence 3677888888888653 45577788999999999973 2 25677777778999999998 789999
Q ss_pred EEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 181 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
|+++.|+|+++...++..|++++.++++++ ++.+|++.|++++++++++|++++ ++|...+ +++|.++|+++
T Consensus 83 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~---~~~i~~l~~~~- 154 (390)
T 3b8x_A 83 IIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNPNN---FDEINKIIGGR- 154 (390)
T ss_dssp EEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCC---HHHHHHHHTTS-
T ss_pred EEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccChhh---HHHHHHHHHHc-
Confidence 999999999999999999999999999754 467999999999988999988863 5566666 88999999999
Q ss_pred CEEEEEeccccccccCCCCcccccccCCCCCceEEEec--cCcccccccceeeEEEcCH-HHHHHHHHHhhhc-------
Q 012124 261 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG--FSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF------- 330 (470)
Q Consensus 261 ~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S--~sK~~~~~G~r~G~~~~~~-~~~~~l~~~~~~~------- 330 (470)
|+++|+|++|+...... ...+.. ..++...| .+|.++ +| +.|++++++ ++.+.+.......
T Consensus 155 ~~~li~D~a~~~g~~~~-----~~~~g~--~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~ 225 (390)
T 3b8x_A 155 DIILLEDNCESMGATFN-----NKCAGT--FGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPK 225 (390)
T ss_dssp CCEEEEECTTCTTCEET-----TEETTS--SSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCS
T ss_pred CCEEEEECcCcccCEEC-----Cccccc--ccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCccccc
Confidence 99999999998532111 111111 11222222 245553 33 349999875 6777666543211
Q ss_pred ------------------------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-
Q 012124 331 ------------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP- 385 (470)
Q Consensus 331 ------------------------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~- 385 (470)
++.++.+...++...+ +++++..++.+++++++.+.|++++|+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 298 (390)
T 3b8x_A 226 KNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET 298 (390)
T ss_dssp EETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC
T ss_pred cccccccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Confidence 1114555544444433 34567777788889999999998888877543
Q ss_pred -CceE-EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEEC---CCCCCC----------------------CCc
Q 012124 386 -QGAF-YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP---GDAFGD----------------------DTC 438 (470)
Q Consensus 386 -~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~p---g~~f~~----------------------~~~ 438 (470)
..++ .+++.++... ..+..++.+.|.++ ||.+.+ |..+.. .+.
T Consensus 299 ~~~~~~~~~i~~~~~~---------~~~~~~l~~~L~~~-gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDS---------GVIRKQLVENLNSA-GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNG 368 (390)
T ss_dssp SBCCCCEEEEEECTTS---------CCCHHHHHHHHHHT-TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHE
T ss_pred CCcccEEEEEEecCcC---------cccHHHHHHHHHHC-CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCE
Confidence 2333 3555665210 01677888888654 999887 321111 025
Q ss_pred EEEEeec--CHHHHHHHHHHH
Q 012124 439 IRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 439 iRls~~~--~~~~i~~~l~~l 457 (470)
+||++.. ++++++..++.|
T Consensus 369 l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 369 LFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp EEEECCSSCCHHHHHHHHHHT
T ss_pred EEeeCCCCCCHHHHHHHHHhh
Confidence 9999987 899999988765
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=213.53 Aligned_cols=334 Identities=14% Similarity=0.119 Sum_probs=228.4
Q ss_pred hHHHHH-HHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-------C-CCC
Q 012124 109 PVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-------S-PGD 179 (470)
Q Consensus 109 ~~~~~~-a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-------~-~gd 179 (470)
|..+.. .+..........|...++..++.+.+.+++.+.+|.+ ++++++|+|+++++..++.++. + +||
T Consensus 121 ~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~ 198 (515)
T 2jis_A 121 PHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGL 198 (515)
T ss_dssp HHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 554443 3443333344567667777888888888888888864 6899999999999988887763 2 576
Q ss_pred ------eEEEcCCCCCChHHHHHHcCC---EEEEecCcCCCCCccCHHhHhhhccC------CceEEEEcCCCCCcccCC
Q 012124 180 ------EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 180 ------~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~l~~p~nPtG~~~ 244 (470)
+|++.+++|+++...++..|. +++.+|++. ++.+|++.|++++++ ++++|++++++||||.+.
T Consensus 199 ~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~ 276 (515)
T 2jis_A 199 RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276 (515)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC
T ss_pred cccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc
Confidence 899999999999999999888 899999863 466999999999964 488899999999999998
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHH--HHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAA 322 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~--~~~~ 322 (470)
+ +++|+++|+++ |+|+++|++|+.+.+....... .+.+..+..+++.|++|.++ .+.++|+++++++ +++.
T Consensus 277 ~---l~~I~~la~~~-g~~l~vD~a~~~~~~~~~~~~~--~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~ 349 (515)
T 2jis_A 277 P---LEAIADVCQRH-GLWLHVDAAWGGSVLLSQTHRH--LLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKR 349 (515)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHH
T ss_pred C---HHHHHHHHHHc-CCeEEEehhhhhHHHhChhhHh--hcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHHH
Confidence 8 88999999999 9999999999987654321111 12221244588899999986 4467999998766 6554
Q ss_pred HH----HHh-hh-------ccC---------CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 323 CN----KIQ-SQ-------FTS---------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 323 l~----~~~-~~-------~~~---------~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
.. ... .. ... ....+.+.++..++. ...++++.++..++++++.+.|++++|++
T Consensus 350 ~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 424 (515)
T 2jis_A 350 CHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGFE 424 (515)
T ss_dssp HHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 21 110 00 000 011344444444443 45677888888999999999999988988
Q ss_pred ecC-CCceEEEeeeccCccCCcccCCCCCCC--------HHHHHHHHHHcCCEEE-ECCCCCCCCCcEEEEee---cCHH
Q 012124 382 MSE-PQGAFYLFIDFSTYYGSEAEGFGKIEN--------SESLCRYLLDKAQVAL-VPGDAFGDDTCIRISYA---ASLT 448 (470)
Q Consensus 382 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~L~~~~gI~v-~pg~~f~~~~~iRls~~---~~~~ 448 (470)
+.. +..+.+.|...|..... .....+ ...+.+.|.++ |+.. .+....+..+++|++++ .+++
T Consensus 425 ~~~~~~~~~v~f~~~p~~~~~----~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~lRis~~~~~~t~e 499 (515)
T 2jis_A 425 LVMEPEFVNVCFWFVPPSLRG----KQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPHGTRGNFFRVVVANSALTCA 499 (515)
T ss_dssp ESSCCSSSEEEEEECCGGGTT----CTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEETTEEEEEEEECCCTTCCHH
T ss_pred EeCCCCeeEEEEEEeCccccc----cccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEECCceEEEEEEeCCCCCCHH
Confidence 765 33455444333421100 000001 11255666666 6433 21111122468999995 3899
Q ss_pred HHHHHHHHHHHHHHh
Q 012124 449 TLQAAVERIKKGLLT 463 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~ 463 (470)
+++.++++|++++++
T Consensus 500 did~~~~~l~~~~~~ 514 (515)
T 2jis_A 500 DMDFLLNELERLGQD 514 (515)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=205.33 Aligned_cols=279 Identities=14% Similarity=0.176 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-----HcCCEEEEecCc
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-----IADATPVILPTR 208 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 208 (470)
.+|++.++++ .|. +++++++++++|+.. +..++++||+|++++|+|.+....+. ..|.+++.++.+
T Consensus 70 ~~l~~~la~l----~g~----~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 140 (400)
T 3nmy_A 70 FAYERCVAAL----EGG----TRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT 140 (400)
T ss_dssp HHHHHHHHHH----HTC----SEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT
T ss_pred HHHHHHHHHH----hCC----CCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC
Confidence 4455555554 342 367777777999997 56788999999999999997665543 459999999863
Q ss_pred CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC
Q 012124 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 209 ~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
|++.+++++++++++|++++|+||||.+++ +++|+++|++| |+++|+|++|....+.. ++ .
T Consensus 141 -------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~~----~~-~--- 201 (400)
T 3nmy_A 141 -------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKH-GLLTVVDNTFASPMLQR----PL-S--- 201 (400)
T ss_dssp -------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHCC----GG-G---
T ss_pred -------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccccCC----hh-h---
Confidence 899999999999999999999999999998 89999999999 99999999998543321 11 1
Q ss_pred CCCceEEEeccCcccccccceeeE--EE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTGWRLGY--IA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G~r~G~--~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+.++++.|+||.++.+|.++|. ++ .++++++.+.........+.+++.+.++...++. +....++..+
T Consensus 202 -~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-------l~~r~~~~~~ 273 (400)
T 3nmy_A 202 -LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-------LPLRMRAHCE 273 (400)
T ss_dssp -GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred -cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-------HHHHHHHHHH
Confidence 24569999999999767777755 33 5788999888877777777888777666666653 3344555677
Q ss_pred HHHHHHHHhccCCCCe-ecCC----------------CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE
Q 012124 366 RRDFLVKSFGELEGVK-MSEP----------------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV 428 (470)
Q Consensus 366 ~~~~l~~~L~~~~g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~ 428 (470)
+.+.+.+.|++.|.+. +..| ..|..++++++... +....+.+.|. -.++.+.
T Consensus 274 ~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~----------~~~~~~~~~l~-~~~~~~s 342 (400)
T 3nmy_A 274 NALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF----------DAAKRFCEKTE-LFTLAES 342 (400)
T ss_dssp HHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH----------HHHHHHHHHCS-SSEECSC
T ss_pred HHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH----------HHHHHHHHcCC-cceEecC
Confidence 7778888888776654 2222 23556888886421 02345555442 3344455
Q ss_pred CCCCCC-----------------------CCCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012124 429 PGDAFG-----------------------DDTCIRISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 429 pg~~f~-----------------------~~~~iRls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
.|..+. .++.+|||++. +.++ .++.|+++++
T Consensus 343 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~d---li~dl~~al~ 397 (400)
T 3nmy_A 343 LGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGD---LRGDLERALV 397 (400)
T ss_dssp CCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHH---HHHHHHHHHC
T ss_pred CCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHH---HHHHHHHHHh
Confidence 554331 13679999998 4433 3455555554
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-24 Score=215.77 Aligned_cols=332 Identities=11% Similarity=0.047 Sum_probs=235.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC-------CcEEEecChHHHHHHHHHHhc------
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-------DQILVSNGAKQSILQAVLAVC------ 175 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~-------~~i~it~g~~~al~~~~~~l~------ 175 (470)
+..+.+.+...+......|...++..++++.+.+++.+.+|.+... ...++|+|+++++..++.+..
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 4455666777776667778888899999999999999999975321 368999999999887776652
Q ss_pred -------------CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcCC
Q 012124 176 -------------SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSP 236 (470)
Q Consensus 176 -------------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~p 236 (470)
.+++.|++++++|.++...++..|++++.+|++ .++ +|++.|+++++++ +.+|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 134689999999999999999999999999996 345 9999999999653 566778889
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
+|+||.+-+ +++|+++|++| |+++++|++|+...+........ +.+......+..+++|.++ ....+|+++..
T Consensus 244 ~t~~G~~~~---l~~I~~la~~~-~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~l~-~p~g~g~l~~~ 316 (475)
T 3k40_A 244 TTNSCAFDY---LDECGPVGNKH-NLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKWML-VNFDCSAMWLK 316 (475)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSS-CCSSCEEEEES
T ss_pred CCCCcCcCC---HHHHHHHHHHh-CCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhccC-CCCceEEEEEe
Confidence 999999977 88999999999 99999999998743322111111 1111123467788999886 44567887765
Q ss_pred HH-HH-HHHHHHhhhc--------------cC-CC---ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 317 KH-FV-AACNKIQSQF--------------TS-GA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 317 ~~-~~-~~l~~~~~~~--------------~~-~~---~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
+. .+ +.+.....+. .. +. ..+.+.++...+. .+.++++.+++.++++++.+.|++
T Consensus 317 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~ 391 (475)
T 3k40_A 317 DPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVA 391 (475)
T ss_dssp SGGGC---------------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 42 32 2221100000 00 01 1233344444442 466788888999999999999999
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHHH
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQAA 453 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~~ 453 (470)
++|+++..+.....++++++..- ....++.++|.+++++.+.|+..++ ..++|++++. ++++|+.+
T Consensus 392 ~~g~~l~~~~~~~iv~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~~g-~~~lR~~~~~~~tt~~di~~~ 460 (475)
T 3k40_A 392 DSRFELAAEINMGLVCFRLKGSN----------ERNEALLKRINGRGHIHLVPAKIKD-VYFLRMAICSRFTQSEDMEYS 460 (475)
T ss_dssp STTEEESSCCBTTEEEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEEETT-EEEEEEECCCTTCCHHHHHHH
T ss_pred CCCEEEecCCceEEEEEEeCCch----------HHHHHHHHHHHhCCcEEEEeeEECC-EEEEEEEeCCCCCCHHHHHHH
Confidence 99998876554444666765310 0357888899888666666654433 5689999874 78999999
Q ss_pred HHHHHHHHHhhCC
Q 012124 454 VERIKKGLLTLRP 466 (470)
Q Consensus 454 l~~l~~~l~~~~~ 466 (470)
+++|+++++++..
T Consensus 461 ~~~i~~~~~~~~~ 473 (475)
T 3k40_A 461 WKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=215.41 Aligned_cols=331 Identities=14% Similarity=0.103 Sum_probs=238.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCC--------CcEEEecChHHHHHHHHHHhcC----
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP--------DQILVSNGAKQSILQAVLAVCS---- 176 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~--------~~i~it~g~~~al~~~~~~l~~---- 176 (470)
|..+.+.+..++......|...++..++++.+.+++.+.+|.+... ...++|+|+++++..++.+..+
T Consensus 92 ~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~ 171 (481)
T 4e1o_A 92 PSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKIL 171 (481)
T ss_dssp HHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHH
Confidence 4556677777777777889888999999999999999999975332 3678999999998887776532
Q ss_pred ---------------CCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcC
Q 012124 177 ---------------PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 235 (470)
Q Consensus 177 ---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~ 235 (470)
+++.|++++++|.++...++..|++++.+|++ .++.+|++.|+++++++ +.+|+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~ 249 (481)
T 4e1o_A 172 EMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249 (481)
T ss_dssp HHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 57899999999999999999999999999985 45679999999999653 66677888
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
++|+||.+-+ +++|+++|++| |+|+++|++|+...+........ +.+...-..+..+++|.++.| ..+|+++.
T Consensus 250 ~~t~~G~id~---l~~I~~la~~~-~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~ 322 (481)
T 4e1o_A 250 GTTGVCAFDC---LSELGPICARE-GLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPSKWMMVH-FDCTGFWV 322 (481)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCcCcCC---HHHHHHHHHHc-CCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChHHhcCCC-CceEEEEE
Confidence 9999999877 88999999999 99999999998754322111111 111112246677899998744 45677665
Q ss_pred C-HHHHHHHHHHh-hhc--------------c--C--CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 316 P-KHFVAACNKIQ-SQF--------------T--S--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 316 ~-~~~~~~l~~~~-~~~--------------~--~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
. +..+....... .+. . . ....+.+.++...+. .+.++++.++..++++++.+.|+
T Consensus 323 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~ 397 (481)
T 4e1o_A 323 KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVR 397 (481)
T ss_dssp SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 44332211000 000 0 0 012444455555442 56788888899999999999999
Q ss_pred cCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHHHHHH
Q 012124 376 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLTTLQA 452 (470)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~~i~~ 452 (470)
+++|+++..+....+++++++..- ....++.++|.+++.+.+.|+.. ....++|++++. ++++|++
T Consensus 398 ~~~g~~~~~~~~~~~v~f~~~~~~----------~~~~~l~~~L~~~g~~~~~~~~~-~g~~~lR~~~~~~~tt~~di~~ 466 (481)
T 4e1o_A 398 NDPSFEIPAKRHLGLVVFRLKGPN----------SLTENVLKEIAKAGRLFLIPATI-QDKLIIRFTVTSQFTTRDDILR 466 (481)
T ss_dssp TCTTEECCSCCCSSEEEEEESSCH----------HHHHHHHHHHHHHCSSBCEEEEE-TTEEEEEEECCCTTCCHHHHHH
T ss_pred cCCCeEEecCCceeEEEEEeCCch----------HHHHHHHHHHHhCCeEEEEeeEE-CCEEEEEEEeCCCCCCHHHHHH
Confidence 999998875554445677775320 03578888888875465555432 234689999875 7899999
Q ss_pred HHHHHHHHHHhh
Q 012124 453 AVERIKKGLLTL 464 (470)
Q Consensus 453 ~l~~l~~~l~~~ 464 (470)
++++|+++++++
T Consensus 467 ~~~~i~~~~~~l 478 (481)
T 4e1o_A 467 DWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=209.60 Aligned_cols=335 Identities=15% Similarity=0.122 Sum_probs=212.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC-CCCCCC---cC---cHHHHHHHHHHHHHHcCCCCCCCc---EEEecChH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPN---AG---TLELRSAICHKLKEENGLSYTPDQ---ILVSNGAK 164 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~y~~~---~g---~~~lr~~ia~~l~~~~g~~~~~~~---i~it~g~~ 164 (470)
..|.|-.+ |++ +++.+++++...+.+.. .+|+.. .| ..+|++...+++.+.+|. +.+. .+++++++
T Consensus 55 ~~i~lias-~n~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt 130 (490)
T 2a7v_A 55 RGLELIAS-ENF-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGS 130 (490)
T ss_dssp HSEECCTT-CCC-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHH
T ss_pred cCceEECC-CCC-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchH
Confidence 34667653 333 68999999988876532 233211 12 246776666788777885 3332 34556788
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHH--------HHHHcCCE--EEEecCcCCCCCccCHHhHhhhcc-CCceEEEE
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIADAT--PVILPTRISENFLLDPKVLESKLT-EKSRLLIL 233 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l 233 (470)
+|+..++.++++|||+|++.++.|.++.. .+...|.. ++++++++ .++.+|+|.|+++++ .++++|++
T Consensus 131 ~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~-~~~~iD~d~le~~l~~~~~klIi~ 209 (490)
T 2a7v_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPRLIIA 209 (490)
T ss_dssp HHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-ccCCcCHHHHHHHHhhcCCcEEEE
Confidence 99999999999999999999998865431 23345554 44455543 345799999999985 47898888
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccc-ccccCCCCcccccccCCCCCceEEEeccCcccccccceeeE
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
+.++||+ ..+ +++|.++|++| |+++++|+++. ++.+.+....++. ...+++.|+||++ .|.|.|+
T Consensus 210 ~~s~~~~--~~d---l~~i~~ia~~~-g~~livD~Ah~~glv~~g~~~~~~~------~aDiv~~S~hK~l--~Gp~GG~ 275 (490)
T 2a7v_A 210 GTSAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFK------HADIVTTTTHKTL--RGARSGL 275 (490)
T ss_dssp CCSSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGGG------TCSEEEEESSGGG--CSCSCEE
T ss_pred cCCCCCC--ccc---HHHHHHHHHHc-CCEEEEccccccccccCCcCCCCCC------CCCEEEECCcccC--ccccchh
Confidence 8888885 445 88999999999 99999999975 3434332222221 2238899999987 4667899
Q ss_pred EEcCHH---------------HHHHHHHHhhhccC-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 313 IAGPKH---------------FVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 313 ~~~~~~---------------~~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++++++ +.+.+.+....... +++.....++..++.... ....++..+++.++++++.+.|.+
T Consensus 276 i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~--~~~~~~~~~~~~~na~~L~~~L~~ 353 (490)
T 2a7v_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC--TPMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 998764 55666655443332 234443444444444311 233467778888899999999998
Q ss_pred CCCCeecCC-CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEee------
Q 012124 377 LEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYA------ 444 (470)
Q Consensus 377 ~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----~~~~iRls~~------ 444 (470)
. |+++..+ ...+++|++++.. + .+..++.+.| ++.||.+..+..++ .++.|||+..
T Consensus 354 ~-G~~v~~~~t~t~lv~vdl~~~-g---------~~~~~~~~~L-~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 354 R-GYSLVSGGTDNHLVLVDLRPK-G---------LDGARAERVL-ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp T-TCEEGGGSCSSSEEEEECTTT-T---------CCHHHHHHHH-HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred c-CcEEecCCCCCeEEEEEeCCC-C---------CCHHHHHHHH-HhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 7 8887642 3456688888542 0 1566666655 55699998654443 2468999763
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 012124 445 ASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 445 ~~~~~i~~~l~~l~~~l~ 462 (470)
.++++++++++.|.++++
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 278999999999888875
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=204.50 Aligned_cols=271 Identities=15% Similarity=0.150 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHc-------CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCC
Q 012124 110 VLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 179 (470)
Q Consensus 110 ~~~~~a~~~~~~~-------~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd 179 (470)
..+++++.+.... ....| +..|..+|++.+++++ | .+..++ ++|+++++..++.++++|||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVF----K----TEAALVRPQIISGTHAISTVLFGILRPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHh----C----CCcEEEECCCccHHHHHHHHHHHhcCCCC
Confidence 4455666654311 12345 3446677888777775 3 234555 88999999999999999999
Q ss_pred eEEEcC-CCCCChHHH----------HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcC----CCCCcccCC
Q 012124 180 EVIIPA-PFWVSYPEM----------ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS----PSNPTGSVY 244 (470)
Q Consensus 180 ~Vlv~~-p~y~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~----p~nPtG~~~ 244 (470)
+|++++ |.|..+... ++..|++++.+++++ ++.+|++.+++++++++++|++++ |+||||.+.
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~ 180 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIE 180 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHH
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccc
Confidence 999998 999998854 466899999999864 356899999999999999999988 899998765
Q ss_pred CHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHH
Q 012124 245 PKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~ 321 (470)
+ +++|+++|++ + |+++|+|++|+.+.+... +. . .+..++++|+||.++.+| .+.||+++++++++
T Consensus 181 ~---l~~I~~la~~~~~-~~~livD~a~~~~~~~~~---p~-~----~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~ 248 (409)
T 3jzl_A 181 K---IKEMIVFVKNINP-EVIVFVDNCYGEFVEYQE---PP-E----VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVD 248 (409)
T ss_dssp H---HHHHHHHHHHHCT-TCEEEEECTTCTTTSSCC---SG-G----GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred c---HHHHHHHHHhhCC-CCEEEEeCCcccccccCC---cc-c----cCCeEEEECccccCCccCCceEEEEEeCHHHHH
Confidence 4 9999999999 9 999999999998654321 11 1 244599999999997444 34699999999999
Q ss_pred HHHHHhhhc----cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ceEEEee
Q 012124 322 ACNKIQSQF----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFI 393 (470)
Q Consensus 322 ~l~~~~~~~----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g~~~~~ 393 (470)
.+....... ..++....+.++...+ +....++++..+++.++.+.|+++ |+++.+.. ..+.+.+
T Consensus 249 ~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 249 LCGYRLTTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEF-GVEADPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCCEE
T ss_pred HHHHHhccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCCccEEEEE
Confidence 988754321 1222221123332222 234456667788888999999888 66664322 2223555
Q ss_pred eccCccCCcccCCCCCCCHHHHHHHHHHc
Q 012124 394 DFSTYYGSEAEGFGKIENSESLCRYLLDK 422 (470)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 422 (470)
.+++. +....+++.|.+.
T Consensus 321 ~l~~~-----------~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 321 SFHNK-----------EKMVAFAQAIQAA 338 (409)
T ss_dssp ECSCH-----------HHHHHHHHHHHHT
T ss_pred EeCCH-----------HHHHHHHHHHHhc
Confidence 66532 1456788887654
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=208.29 Aligned_cols=257 Identities=15% Similarity=0.180 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHHH----------HHcCCEEE
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEMA----------RIADATPV 203 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~~----------~~~g~~~~ 203 (470)
..++.+.+++.+.+|.+....+++++ ++++++..++.++++|||+|++++ |.|..+...+ +..|++++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 44777777777777754333344455 568999999999999999999998 9999988655 44799999
Q ss_pred EecCcCCCCCccCHHhHhhhccCCceEEEEc-CCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCc
Q 012124 204 ILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 204 ~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~-~p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
.++.+.+ +.+|++.|++++++++++|+++ +||||+|..++.+++++|+++|++ + |+++|+|++|+.+.+...
T Consensus 144 ~v~~~~~--~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~-~~~livDea~~~~~~~~~-- 218 (431)
T 3ht4_A 144 AVPLTEG--GLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP-DVVVFVDNCYGEFIEEQE-- 218 (431)
T ss_dssp ECCBCTT--SSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTSSSCC--
T ss_pred EeCCCCC--CCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC-CCEEEEeCCChhhccCCC--
Confidence 9998743 5699999999999999999997 689999999999999999999999 9 999999999998765432
Q ss_pred ccccccCCCCCceEEEeccCccccc-ccceeeEEEcCHHHHHHHHHHhhhccCC----CChHHHHHHHHHHhcCCCChHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTSG----ASSISQKAGVAALGLGYAGGEV 355 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~----~~~~~q~a~~~~l~~~~~~~~~ 355 (470)
+. .+ +..++++|+||.+|. .+...||+++++++++.+.........+ ++...+.++...+. .
T Consensus 219 -~~-~~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~-------~ 285 (431)
T 3ht4_A 219 -PC-HV----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF-------L 285 (431)
T ss_dssp -GG-GT----TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-------H
T ss_pred -cc-cc----CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-------h
Confidence 11 11 335999999999752 1134499999999999988755432221 21111222333232 3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeecCC----CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc
Q 012124 356 VSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 422 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 422 (470)
...+.++..++.+++.+.|+++ |+++.+. ..++.+.+.+++.. ...++++.|.+.
T Consensus 286 ~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~~~-----------~~~~~~~~l~~~ 344 (431)
T 3ht4_A 286 APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDDKD-----------RMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCCHH-----------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCCHH-----------HHHHHHHHHHhc
Confidence 3455666777888888888877 5555322 23334566665421 456788887654
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=205.11 Aligned_cols=216 Identities=12% Similarity=0.095 Sum_probs=156.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEe-cC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVIL-PT 207 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v-~~ 207 (470)
..++++.+++++ |. . +.+ +++++++++..++.+++++||+|+++.++|+++...+ +..|++++.+ +.
T Consensus 60 ~~~l~~~la~~~----g~--~-~~v-~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 60 VDVLEKRLAALE----GG--K-AAL-ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHH----TC--S-EEE-EESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHh----CC--C-ceE-EecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 467888888876 32 1 344 4555599999999999999999999999999887765 7789999998 75
Q ss_pred cCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccc-cccccCCCCccccccc
Q 012124 208 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASL 286 (470)
Q Consensus 208 ~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~-~~~~~~~~~~~~~~~~ 286 (470)
+ |++.+++++++++++|++++++||||.+++ +++|.++|+++ |+++|+|++| +.. +... ++ .
T Consensus 132 ~-------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~-g~~livD~~~~~~g-~~~~---~~-~- 194 (421)
T 2ctz_A 132 E-------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMGG-YLLR---PL-A- 194 (421)
T ss_dssp C-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGGG-TSCC---GG-G-
T ss_pred C-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccc-ccCC---cc-c-
Confidence 2 899999999999999999999999999999 88999999999 9999999999 532 2221 11 1
Q ss_pred CCCCCceEEEeccCcccccccceeeEEEcC---HHH----HHHHHH----------------------H----hhhccCC
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KHF----VAACNK----------------------I----QSQFTSG 333 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~---~~~----~~~l~~----------------------~----~~~~~~~ 333 (470)
.+..+++.|++|.++.+|.|+|++++. .++ .+.+.. . .......
T Consensus 195 ---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~ 271 (421)
T 2ctz_A 195 ---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA 271 (421)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred ---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCC
Confidence 234589999999998789999988874 112 112210 0 0112224
Q ss_pred CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 334 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 334 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
.+++...++...++. +....++..++.+.+.+.|++.|++...
T Consensus 272 ~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v 314 (421)
T 2ctz_A 272 LGPFEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp CCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCHHHHHHHHcCcch-------HHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence 455554444444432 3334445557888888899888887654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=204.46 Aligned_cols=254 Identities=11% Similarity=0.078 Sum_probs=180.6
Q ss_pred CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCCeEEEcC-CCCCChHHH----------
Q 012124 129 PNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM---------- 194 (470)
Q Consensus 129 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd~Vlv~~-p~y~~~~~~---------- 194 (470)
+..|..+|++.+++++ |. +..++ ++|+++++..++.++++|||+|++++ |.|.++...
T Consensus 71 ~~~~~~~Le~~lA~l~----g~----e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~ 142 (427)
T 3i16_A 71 GDIGRDSLDAVYARVF----NT----ESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG 142 (427)
T ss_dssp TCHHHHHHHHHHHHHH----TC----SEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred CHHHHHHHHHHHHHHh----CC----cceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence 3445667777777765 42 33355 78889999999999999999999999 999988744
Q ss_pred -HHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcC----CCCCcccCCCHHHHHHHHHHHHh--CCCEEEE
Q 012124 195 -ARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRLLVL 265 (470)
Q Consensus 195 -~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~----p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI 265 (470)
++..|++++.++++.+ +.+|++.++++++ +++++|++++ |+||||.+ .++++|+++|++ + |+++|
T Consensus 143 ~l~~~G~~~~~v~~~~~--g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la~~~~~-g~~li 216 (427)
T 3i16_A 143 SLKEFGINYKQVDLKED--GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI---EDIKSIVDCVKNIRK-DIICF 216 (427)
T ss_dssp CTGGGTCEEEECCCCTT--SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHHHHHCT-TSEEE
T ss_pred HHHHcCCEEEEecCccC--CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHHHHhCC-CCEEE
Confidence 4567999999998644 3589999999998 7899999988 88888765 559999999999 9 99999
Q ss_pred EeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHhhhccCC--CCh-HHHHH
Q 012124 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSG--ASS-ISQKA 341 (470)
Q Consensus 266 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~-~~q~a 341 (470)
+|++|..+.+... ++ . .+..++++|+||.+|.+| .+.||+++++++++.+.........+ .++ +. +
T Consensus 217 vD~a~~~~~~~~~---p~-~----~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~ 286 (427)
T 3i16_A 217 VDNCYGEFMDTKE---PT-D----VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG--V 286 (427)
T ss_dssp EECTTTTTSSSSC---GG-G----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--C
T ss_pred EECCCccccccCC---cc-c----cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH--H
Confidence 9999998654321 11 1 234599999999997444 56799999999999988754322221 111 22 1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc----eEEEeeeccCccCCcccCCCCCCCHHHHHH
Q 012124 342 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCR 417 (470)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (470)
+..+++. -+....++++..+++.++.+.|+++ |+++.+..+ .+.+.+.+.+. +...+|++
T Consensus 287 a~~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~~~-----------~~~~~f~~ 350 (427)
T 3i16_A 287 VRSMYQG----LFLAPHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFNDK-----------DKLIEFCK 350 (427)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECSSH-----------HHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEECCH-----------HHHHHHHH
Confidence 2222221 2334566777788888899999888 666643322 22455566432 14567888
Q ss_pred HHHHc
Q 012124 418 YLLDK 422 (470)
Q Consensus 418 ~L~~~ 422 (470)
.|...
T Consensus 351 ~l~~~ 355 (427)
T 3i16_A 351 GIQTG 355 (427)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 77544
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=203.13 Aligned_cols=269 Identities=12% Similarity=0.108 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHc-------CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCC
Q 012124 110 VLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 179 (470)
Q Consensus 110 ~~~~~a~~~~~~~-------~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i---t~g~~~al~~~~~~l~~~gd 179 (470)
+.+.+++.+.... ....| +..|..+|++.+++++ | .+..++ ++|+++++..++.++++|||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~----g----~e~alv~p~~~sGt~A~~~al~all~pGD 117 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIF----N----TESAFVRPHFVNGTHAIGAALFGNLRPND 117 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHh----C----CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 4566666654321 12334 3346677777777765 3 234566 78889999999999999999
Q ss_pred eEEEcC-CCCCChHH-----------HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc--CCceEEEEcC----CCCCcc
Q 012124 180 EVIIPA-PFWVSYPE-----------MARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTG 241 (470)
Q Consensus 180 ~Vlv~~-p~y~~~~~-----------~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~--~~~~~i~l~~----p~nPtG 241 (470)
+|++++ |.|.++.. .++..|++++.++. . ++.+|+|.++++++ +++|+|++++ |+||||
T Consensus 118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~--~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg 194 (427)
T 3hvy_A 118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-K--DGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL 194 (427)
T ss_dssp EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-B--TTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-C--CCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence 999999 99998874 34568999999998 2 34699999999998 8999999988 888887
Q ss_pred cCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHH
Q 012124 242 SVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKH 318 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~ 318 (470)
.+ .++++|+++|++ + |+++|+|++|+.+.+... ++ . .+..++++|+||.++.+| .+.||++++++
T Consensus 195 ~v---~dl~~i~~ia~~~~~-g~~livD~a~~~~~~~~~---p~-~----~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 195 RI---AEIAEIIKSIREVNE-NVIVFVDNCYGEFVEEKE---PT-D----VGADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CH---HHHHHHHHHHHHHCS-SSEEEEECTTCTTTSSSC---GG-G----GTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred cH---HHHHHHHHHHHHhCC-CCEEEEECCccccccCCC---Cc-c----cCCeEEEECCcccccccccceEEEEEECHH
Confidence 65 459999999999 8 999999999988654322 11 1 234599999999997333 45699999999
Q ss_pred HHHHHHHHhhhccCC---CChHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc----eEE
Q 012124 319 FVAACNKIQSQFTSG---ASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFY 390 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~---~~~~~-q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----g~~ 390 (470)
+++.+.........+ .+++. +.++...+ .....++++..++..++.+.|+++ |+++.+..+ .+.
T Consensus 263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li 334 (427)
T 3hvy_A 263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELA-GFDVLPKYNDKRTDII 334 (427)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSE
T ss_pred HHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCceEE
Confidence 999988754322211 12122 22222222 234456667778888889999888 666643322 224
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHH
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLD 421 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 421 (470)
+.+.+.+. +...++++.|..
T Consensus 335 ~~~~l~~~-----------~~~~~f~~~l~~ 354 (427)
T 3hvy_A 335 QAIKFNDE-----------KKLIDFIKGIQT 354 (427)
T ss_dssp EEEECSSH-----------HHHHHHHHHHHH
T ss_pred EEEeCCCH-----------HHHHHHHHHhcc
Confidence 55666432 145677777754
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=211.10 Aligned_cols=311 Identities=12% Similarity=0.065 Sum_probs=205.1
Q ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH-HHHcCCEEEEecCcC
Q 012124 131 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRI 209 (470)
Q Consensus 131 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~ 209 (470)
.-..++++.+|+++ |. ...+++++|+++++..++.+++++||+|+++.++|.++... ++..|++++.++...
T Consensus 173 ~~i~e~e~~lA~~~----ga---e~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 173 GPAVAAEKHAARVY----NA---DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp THHHHHHHHHHHHT----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHH----CC---CcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 33467777777764 43 24588999999999999999999999999999999998887 888999999988753
Q ss_pred CCCCc----cCHHhH-----hhhccCC------c----eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccc
Q 012124 210 SENFL----LDPKVL-----ESKLTEK------S----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 270 (470)
Q Consensus 210 ~~~~~----~d~~~l-----~~~l~~~------~----~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~ 270 (470)
+ .++ +|++.| +++++++ + +++++++| ||+|.+.+ +++|+++|+++ +++||+|++|
T Consensus 246 ~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~-g~~livDeAh 319 (730)
T 1c4k_A 246 N-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL-CDYIEFDSAW 319 (730)
T ss_dssp C-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG-BSEEEEECTT
T ss_pred c-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc-CCeEEEEccc
Confidence 2 233 788988 8988765 4 88999998 58999998 88999999999 9999999999
Q ss_pred ccc-ccCCCC--ccccc--ccCCCCCceEEEeccCcccccccceee-EEEcCHHH---------HHHHHHHh-hhccCCC
Q 012124 271 EHI-IYAPAT--HTSFA--SLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHF---------VAACNKIQ-SQFTSGA 334 (470)
Q Consensus 271 ~~~-~~~~~~--~~~~~--~~~~~~~~~i~i~S~sK~~~~~G~r~G-~~~~~~~~---------~~~l~~~~-~~~~~~~ 334 (470)
+.. .|.+.. ..++. .+..+..+++++.|+||.+ +|++.| +++.+++. ...+.... ...+.++
T Consensus 320 ~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp 397 (730)
T 1c4k_A 320 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSP 397 (730)
T ss_dssp CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSC
T ss_pred ccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCC
Confidence 753 343211 11121 1121234779999999986 455554 55332221 12233222 2223345
Q ss_pred ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCc--------------------------
Q 012124 335 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQG-------------------------- 387 (470)
Q Consensus 335 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~-------------------------- 387 (470)
+.....++..++..- ..+...+..+++.++.+.+.+.|++ ++|+++..|..
T Consensus 398 ~~~~iaal~aA~~~l--~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (730)
T 1c4k_A 398 FYPMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKG 475 (730)
T ss_dssp CHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTT
T ss_pred cHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCcc
Confidence 555444444444320 0212344556667777778888877 67877654421
Q ss_pred -----------e-EE-----EeeeccCc--cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--C
Q 012124 388 -----------A-FY-----LFIDFSTY--YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--S 446 (470)
Q Consensus 388 -----------g-~~-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~ 446 (470)
+ ++ +.+..|+. ..... .....+..++.+.|.++ ||.+.+. ....+|++++. +
T Consensus 476 ~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~--~~~g~~~~~l~~~L~e~-GI~v~~~----~~~~ir~~~s~g~t 548 (730)
T 1c4k_A 476 AKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDY--EDFGVPATIVANYLRDH-GIIPEKS----DLNSILFLMTPAET 548 (730)
T ss_dssp CTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEE--CSSCCCHHHHHHHHHHT-TCCCSEE----CSSEEEEECCTTCC
T ss_pred chhccccccCCcccccCCeEEEEEeCCcccccccc--cccCCCHHHHHHHHHHC-CcEEEEC----CCCeEEEEeCCCCC
Confidence 1 11 34444420 00000 00112678888888776 8877542 24689999886 8
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 012124 447 LTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~~~~ 465 (470)
+++++.+++.|.++.+.+.
T Consensus 549 ~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8999999999999887654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=202.72 Aligned_cols=307 Identities=13% Similarity=0.088 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 212 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 212 (470)
..++++.+++++ |. .+.+++++|+++++..++.++++|||.|+++.|+|.++...+...|++++.++.+.+ +
T Consensus 207 v~~~ee~la~l~----G~---d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~ 278 (755)
T 2vyc_A 207 FGESEKYAARVF----GA---DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-R 278 (755)
T ss_dssp HHHHHHHHHHHH----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-T
T ss_pred HHHHHHHHHHHh----CC---CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-c
Confidence 345566666554 43 246889999999999999999999999999999999999889999999999998643 2
Q ss_pred Cc----c-----CHHhHhhhccC--Cce--------EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccc
Q 012124 213 FL----L-----DPKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 273 (470)
Q Consensus 213 ~~----~-----d~~~l~~~l~~--~~~--------~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~ 273 (470)
++ + |++.|++++++ +++ ++++++| ||||.+.+ +++|+++|++| +++||+|++|+..
T Consensus 279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~-~~~livDeA~~~~ 353 (755)
T 2vyc_A 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGY 353 (755)
T ss_dssp TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTT-CSEEEEECTTCTT
T ss_pred cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHc-CCEEEEECcCchh
Confidence 33 4 99999999853 344 8888988 79999998 88999999999 9999999999753
Q ss_pred -ccCCC--Ccccccc--cCCCCCceEEEeccCcccccccce-eeEEEcCHH---H-HHHHHHH-hhhccCCCChHHHHHH
Q 012124 274 -IYAPA--THTSFAS--LPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKH---F-VAACNKI-QSQFTSGASSISQKAG 342 (470)
Q Consensus 274 -~~~~~--~~~~~~~--~~~~~~~~i~i~S~sK~~~~~G~r-~G~~~~~~~---~-~~~l~~~-~~~~~~~~~~~~q~a~ 342 (470)
.+++. +..++.. .+-...++|++.|+||.+ +|.+ .|+++.+.+ + ...+... ....+.+++.+...++
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal 431 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASN 431 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23321 1122211 121246788999999986 4555 566666443 1 1233332 2223344565555554
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC---------CeecCCC---------------------------
Q 012124 343 VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG---------VKMSEPQ--------------------------- 386 (470)
Q Consensus 343 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g---------~~~~~~~--------------------------- 386 (470)
..+++.-. ....++..+++.++.+.+.+.|++++| +++..|.
T Consensus 432 ~aA~~~l~--~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (755)
T 2vyc_A 432 DVAVSMMD--GNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDC 509 (755)
T ss_dssp HHHHHHHS--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGG
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhh
Confidence 44444210 111233444444555555555554433 3332221
Q ss_pred ----------------ce------EEEeeeccCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE
Q 012124 387 ----------------GA------FYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS 442 (470)
Q Consensus 387 ----------------~g------~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls 442 (470)
.+ .-+.+.++.. + ..+ .....+...+.+.|.+ +||.+.. ...+.+|++
T Consensus 510 ~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~-~--~~G~~~~~g~~~~~l~~~L~~-~gI~~e~----~~~~~v~~~ 581 (755)
T 2vyc_A 510 WVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGM-G--EDGELEETGVPAALVTAWLGR-HGIVPTR----TTDFQIMFL 581 (755)
T ss_dssp TBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCB-C--TTSSBCSSCCCHHHHHHHHHT-TTCCCSE----ECSSEEEEE
T ss_pred hccCcccccccccccCCCccccCCeEEEEEcCCC-C--CCCCccccCCcHHHHHHHHHH-CCCEEee----cCCCeEEEE
Confidence 11 1223344321 0 000 0001255778877754 7886643 235789999
Q ss_pred eec--CHHHHHHHHHHHHHHHHhh
Q 012124 443 YAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 443 ~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++. ++++++.+++.|.++.+.+
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhh
Confidence 987 8888999888888886654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-20 Score=182.48 Aligned_cols=343 Identities=15% Similarity=0.125 Sum_probs=213.4
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. +|.+.+++.+++........+..-..+|.+.|++.+ + ..+.+.+++++++|.+
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~----p---~~~~v~f~~SGsEA~e 157 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERF----P---QIEQLRFTNSGTEANL 157 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHS----T---TCSEEEEESSHHHHHH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHH
Confidence 6788999987753 3333 799999999999875443333334445555555543 2 4579999999999999
Q ss_pred HHHHHhcC--CCCeEEEcCCCCCChHHHHHH------cCCEEEEecCcCCCCCccCHHhHhhhccC---CceEEEEcCCC
Q 012124 169 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI------ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPS 237 (470)
Q Consensus 169 ~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~------~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~i~l~~p~ 237 (470)
.+++.... ..++|+..+-+|++....+-. .......+|. -|++.+++.+++ ++.+|++...+
T Consensus 158 ~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIvEPv~ 230 (454)
T 4ao9_A 158 MALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLVEPMQ 230 (454)
T ss_dssp HHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEECSEE
T ss_pred HHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEecccc
Confidence 99887532 346888888899875432111 1223344443 278888888843 45666664445
Q ss_pred CCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC
Q 012124 238 NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316 (470)
Q Consensus 238 nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~ 316 (470)
...|. ..+++.+++|.++|++| |+++|.||++.. ..+.........+.++ +-+++|.+| .|+.+|.+++.
T Consensus 231 g~~G~~~p~~~fL~~lr~lc~~~-g~lLI~DEV~tG-R~G~~~a~e~~gv~PD------i~t~gK~lg-gG~Piga~~~~ 301 (454)
T 4ao9_A 231 GASGCIPGQPDFLQALRESATQV-GALLVFDEVMTS-RLAPHGLANKLGIRSD------LTTLGKYIG-GGMSFGAFGGR 301 (454)
T ss_dssp STTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTGG-GGSTTCHHHHHTCCCS------EEEEEGGGG-TTSSCEEEEEC
T ss_pred CCCCccCCchhhHHHHHHHHhhc-CCEEEEECCCcC-CCccccchhccCCCCc------EEEeccccC-CCCcceeeeeH
Confidence 55665 56788999999999999 999999999974 3322111111223332 446889998 89999999999
Q ss_pred HHHHHHHHHH----hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEe
Q 012124 317 KHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392 (470)
Q Consensus 317 ~~~~~~l~~~----~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~ 392 (470)
+++++.+... ....+++.+++...++.+.|+.-.. ++.++++.+.-+..++.|.+.+.+. ++......-|..+.
T Consensus 302 ~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~~vrg~G~m~g 379 (454)
T 4ao9_A 302 ADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNALCANE-GVAMQFTGIGSLMN 379 (454)
T ss_dssp HHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHH-TBSCEEEEETTEEE
T ss_pred HHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHhhC-CCCEEEeeeceEEE
Confidence 9999876432 1234677899999999888875322 3434333333333333333333333 22111112233344
Q ss_pred eeccCccCCcccCCCCC--CCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhCC
Q 012124 393 IDFSTYYGSEAEGFGKI--ENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+.+.+............ .....++..|+++ ||.+.|. +.+.++...++++|++++++|++++.++..
T Consensus 380 i~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-Gv~~~p~------~~~~~s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 380 AHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNE-DIYSSPR------GFVVLSLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp EESCCSCCCSGGGGTTCCHHHHHHHHHHHHHT-TEECCTT------CEEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred EEEecCCCCCHHHHHhhhHHHHHHHHHHHHHC-CEEEcCC------CCEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 44422100000000000 0123466677776 9998774 345566667999999999999999988764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=178.95 Aligned_cols=322 Identities=11% Similarity=0.052 Sum_probs=213.6
Q ss_pred CCChHHHHHHHHHHHHcC----CCC---CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHHHHHhcCC
Q 012124 106 FDTPVLIAEAGINAIREG----FTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAVCSP 177 (470)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~----~~~---y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~~~~l~~~ 177 (470)
.+.|+.+.+++.+.+.+. ... +.......++.+...+.+++.+|.+ ++++|++ |+|+++++++++..++.+
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~-~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP-DNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCCeEEEEcCchHHHHHHHHHhccCC
Confidence 345899999998876531 111 1011112334444444455555642 3357888 589999999999999865
Q ss_pred --CCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 178 --GDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 178 --gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
||+|++..-++.+. ...++..|..++.++.+. ++..+++.++..+++++++|.+++..|.||+..|.
T Consensus 101 ~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi------- 171 (377)
T 3e77_A 101 KAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF------- 171 (377)
T ss_dssp STTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-------
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCCCccEEEEeCccCchheEchh-------
Confidence 99988766655443 234566788877777753 34477888888888899999888888899999994
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH----------
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC---------- 323 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l---------- 323 (470)
+|+++ ++++++|.+.+. +..+..+..+ + +++.|..|.+|.+| +|+++..+++++.+
T Consensus 172 -i~~~~-~~~~~vD~~q~~----g~~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~ 237 (377)
T 3e77_A 172 -IPDVK-GAVLVCDMSSNF----LSKPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEY 237 (377)
T ss_dssp -CCCCT-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCH
T ss_pred -hhccC-CCEEEEEccccc----CCCCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhH
Confidence 36788 999999999875 2223333332 2 46788899998677 68887765543211
Q ss_pred HHH-h-hhccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCCeecC----CCceEEEeeecc
Q 012124 324 NKI-Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFS 396 (470)
Q Consensus 324 ~~~-~-~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~----~~~g~~~~~~~~ 396 (470)
... . ......++.....++.++|+.- .+. .++.+.++.++..+++++.|++++|+.+.. ..++..+.+.+|
T Consensus 238 ~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~ 315 (377)
T 3e77_A 238 KVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG 315 (377)
T ss_dssp HHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES
T ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC
Confidence 111 1 1122345566666666666631 123 578899999999999999999998887432 123444666776
Q ss_pred CccCCcccCCCCCCC-HHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 397 TYYGSEAEGFGKIEN-SESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~-~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+.-. ..+ ...+...|.+ +||.+.+|.. ..+.+|+|+.. ++++++.+++.|++++++.
T Consensus 316 ~~~~--------~~~~~~~~l~~l~~-~Gi~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 316 NAKG--------DDALEKRFLDKALE-LNMLSLKGHR--SVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp STTC--------CHHHHHHHHHHHHH-TTEESCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCC--------chhHHHHHHHHHHH-CCcEEeCCCC--cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 4200 001 1356666654 5999988753 35689999987 8999999999999998763
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=169.26 Aligned_cols=326 Identities=14% Similarity=0.131 Sum_probs=211.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC----CCCC--CC-CcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRY--TP-NAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~----~~~y--~~-~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~a 166 (470)
.++.|+.|.- +.|+.+++++.+.+.+. ...| .. .....++.+...+.+++.+|.+ ++++|++ |+|++++
T Consensus 5 ~~~~f~pgpt--~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~-~~~~v~f~t~~~T~a 81 (361)
T 3m5u_A 5 RKINFSAGPS--TLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELN-DDYEVLFLQGGASLQ 81 (361)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCC--CCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCcHHHH
Confidence 4456665532 45888999988876421 1101 01 1111233334444444445642 3457887 9999999
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
+++++..++ +||++.+-.-+..+ +...++..|+++..++.+.++.+.++++. + +++++++|.+++..|.||...
T Consensus 82 ~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 82 FAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSSEEEEESEETTTTEEC
T ss_pred HHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCCEEEEeCCCCCcceeC
Confidence 999999998 88865322222222 23445678999999998754433246666 3 888999999888888899987
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+. | + ++ ++++++|.+.+.. ..+..+.. -.+++.|..|.+|.+| +|+++..+++.+.+.
T Consensus 158 ~~-----i---~-~~-~~~~~vD~~q~~g----~~~id~~~------~d~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~ 215 (361)
T 3m5u_A 158 QN-----Y---P-KT-KTPLIVDASSDFF----SRKVDFSN------IALFYGGVQKNAGISG--LSCIFIRKDMLERSK 215 (361)
T ss_dssp SS-----C---C-CC-SSCEEEECGGGTT----SSCCCCTT------EEEEEEETTTTSSCTT--CEEEEEEHHHHHHHH
T ss_pred Cc-----c---c-cc-CCEEEEEcccccC----CCCCCccc------CCEEEEechhccCCCc--cEEEEEcHHHHhhhc
Confidence 72 2 2 36 8999999998752 22222222 2377889999998666 799999988877654
Q ss_pred H-----------H-hh-hccCCCChHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCC-eecC-C--C
Q 012124 325 K-----------I-QS-QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGV-KMSE-P--Q 386 (470)
Q Consensus 325 ~-----------~-~~-~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~-~--~ 386 (470)
. . .. .....++.....++.++++.-. +. .++.+.++.++..+++++.|++++|+ .... + .
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~--~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~r 293 (361)
T 3m5u_A 216 NKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLL--NQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDR 293 (361)
T ss_dssp TCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGB
T ss_pred CCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHc
Confidence 2 1 11 1123456666666666665310 22 37888889999999999999998766 4432 1 2
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+...+.+.+|+..+ -..++...|. ++||.+.+|.. ..+.+|+|+.. ++++++.+++.|+++.++.
T Consensus 294 s~~ivsf~~~~~~~----------~~~~~~~~L~-~~gI~~~~g~~--~~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 294 SLMNVSFNIAKNKD----------LEPLFVKEAE-EAGMIGLKGHR--ILGGIRASIYNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp CSSEEEEEESSCTT----------HHHHHHHHHH-HTTEECCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCchh----------hhHHHHHHHH-HCCCEEecCCC--ccCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence 23345667764100 1246776664 55999988753 23679999987 8999999999999988763
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=166.99 Aligned_cols=402 Identities=11% Similarity=0.056 Sum_probs=233.7
Q ss_pred cCcccCCCCCCCCCCC---CccccCCccccccccccccchhhhhhcCCCcccccccCccccccccCCchHHHHHHHHHHH
Q 012124 13 SNPVNFGHSKIPAQIP---GSVSFPSRYLHNFNLNNDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATAL 89 (470)
Q Consensus 13 ~~~~~~~g~~lPs~R~---La~~l~vs~~TAy~~L~~~G~i~s~~g~sG~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (470)
++|....|+++..... .++.+..-.-|-...+.++|=|.-..| .|.||..
T Consensus 11 ss~~~p~~~~~~~~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg-~G~~l~D-------------------------- 63 (473)
T 4e3q_A 11 SSGLVPRGSHMNKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHG-EGPYIVD-------------------------- 63 (473)
T ss_dssp -----------CCCCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEE-ETTEEEE--------------------------
T ss_pred ccCccCCCCCCCCcccHHHHHhhhcCCCCCChhhhccCCCEEEEee-ecCEEEe--------------------------
Confidence 5666667777764433 333344433343344555665554558 8988843
Q ss_pred HhcCCCeEEccCCCCCC--CC-hHHHHHHHHHHHHcCCCCCCCCcC-cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 90 AQAGVSVIRLAAGEPDF--DT-PVLIAEAGINAIREGFTRYTPNAG-TLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 90 ~~~~~~~i~l~~g~~~~--~~-~~~~~~a~~~~~~~~~~~y~~~~g-~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
.+|+.+||+..|.... .. ++.+.+++.+++.+.. .|....+ ..+....+++.|.+..+ .+-+.+++++++++
T Consensus 64 -~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsE 139 (473)
T 4e3q_A 64 -VNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSE 139 (473)
T ss_dssp -TTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCC-CCCCCTTEEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHH
T ss_pred -CCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcc-cccccccccCHHHHHHHHHHHhhCC--CCccEEEEeCchHH
Confidence 2678899999886443 33 7899999999987632 2222222 23555567777766544 24468999999999
Q ss_pred HHHHHHHHhc-------CCC-CeEEEcCCCCCChHHHHHH-cCC-----------EEEEecCcCC---CCCccC------
Q 012124 166 SILQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADA-----------TPVILPTRIS---ENFLLD------ 216 (470)
Q Consensus 166 al~~~~~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g~-----------~~~~v~~~~~---~~~~~d------ 216 (470)
|.+.+++... .++ .+|+...-+|++....... .|- ..+.++.... +...-.
T Consensus 140 A~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 219 (473)
T 4e3q_A 140 ANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVA 219 (473)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHH
Confidence 9999998642 233 5788888999986543322 221 1222222100 000001
Q ss_pred --HHhHhhhcc----CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCC
Q 012124 217 --PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPG 288 (470)
Q Consensus 217 --~~~l~~~l~----~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~ 288 (470)
.+++++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||+...|...+.... ....+.+
T Consensus 220 ~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~-gilLI~DEV~tGfGRtG~~fa~e~~gv~P 298 (473)
T 4e3q_A 220 RLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY-DIPVISDEVICGFGRTGNTWGCVTYDFTP 298 (473)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc-ceEEeccCccccCCcccchhHHHhcCCCC
Confidence 233444442 24556666555665675 56788999999999999 999999999998743332111 1112222
Q ss_pred CCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHHh-------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 360 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 360 (470)
+ +-+++|.++ .| +++|.+++.+++.+.+.... ...+++.++++..++.+.|+.-.. +..+++
T Consensus 299 D------i~t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~-~~l~~~-- 368 (473)
T 4e3q_A 299 D------AIISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN-EGLAEN-- 368 (473)
T ss_dssp S------EEEECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH-SSHHHH--
T ss_pred C------hHHhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc-ccHHHH--
Confidence 2 445889998 77 99999999999998886532 235677899998888888763110 122233
Q ss_pred HHHHHHHHHHHHHhcc---CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCC
Q 012124 361 KAFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDT 437 (470)
Q Consensus 361 ~~~~~~~~~l~~~L~~---~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~ 437 (470)
.++.-+++.+.|++ .+.+.-.. .-|+++-+++.........-.........+.+.++++ ||++.|. .+
T Consensus 369 --~~~~g~~l~~~L~~l~~~~~v~~vR-G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~-Gll~~~~-----g~ 439 (473)
T 4e3q_A 369 --VRRLAPRFEERLKHIAERPNIGEYR-GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDL-GLICRPL-----GQ 439 (473)
T ss_dssp --HHHHHHHHHHHHHHHTTSTTEEEEE-EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECEEE-----TT
T ss_pred --HHHHHHHHHHHHHHHhcCCCeeEEe-ecceEEEEEEecCccccccccccHHHHHHHHHHHHHC-CcEEEec-----CC
Confidence 33333344444433 34442221 2345555665322100000000001245677777765 9998874 25
Q ss_pred cEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 438 CIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 438 ~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+|++... +++++++++++|+++++++.
T Consensus 440 ~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 440 SVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78887653 99999999999999998753
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=178.37 Aligned_cols=305 Identities=12% Similarity=0.156 Sum_probs=187.6
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 211 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 211 (470)
-..++++.+|+++ | ....+++++|++.++..++.++++|||.|+++.++|.++.+.+...|++++.++...+
T Consensus 196 ~i~eaE~~lA~~f----G---a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~- 267 (715)
T 3n75_A 196 PHKEAEQYIARVF----N---ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN- 267 (715)
T ss_dssp HHHHHHHHHHHHH----T---CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC-
T ss_pred HHHHHHHHHHHHh----C---CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc-
Confidence 3457777777775 4 2346778889899999999999999999999999999999999999999999997643
Q ss_pred CCcc---------CHHhHhhhccC--Cce---EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc-cC
Q 012124 212 NFLL---------DPKVLESKLTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YA 276 (470)
Q Consensus 212 ~~~~---------d~~~l~~~l~~--~~~---~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~ 276 (470)
.+++ |++.|++++++ +++ ++++++| ||+|.+++ +++|+++|+++ + ||+||+|+... |.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~-~--livDEAH~~~~~f~ 340 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFS 340 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS-E--EEEECTTCTTGGGS
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC-c--EEEccccccccccC
Confidence 4543 89999999963 334 7889999 99999999 77778888766 4 78999998643 33
Q ss_pred CCCcccccccCC--CCCc-eEEEeccCcccccccc-eeeEEEcCHHH-HHHHHHHhhh-ccCCCChHHHHHHHHHHhcCC
Q 012124 277 PATHTSFASLPG--MWER-TLTVNGFSKAFAMTGW-RLGYIAGPKHF-VAACNKIQSQ-FTSGASSISQKAGVAALGLGY 350 (470)
Q Consensus 277 ~~~~~~~~~~~~--~~~~-~i~i~S~sK~~~~~G~-r~G~~~~~~~~-~~~l~~~~~~-~~~~~~~~~q~a~~~~l~~~~ 350 (470)
+. .+....+.. ..+. ++++.|++|+++ |+ ..|++.++.++ ...+...... .+.+++.+...++..+++.-
T Consensus 341 ~~-~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~- 416 (715)
T 3n75_A 341 PI-YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMM- 416 (715)
T ss_dssp GG-GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH-
T ss_pred Cc-cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-
Confidence 21 111122211 0234 366999999974 43 35888776542 2334433333 34456666555555554320
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCC----C--CeecCCC-----------------------ce-EE-----Eeeec
Q 012124 351 AGGEVVSKMVKAFRERRDFLVKSFGELE----G--VKMSEPQ-----------------------GA-FY-----LFIDF 395 (470)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g--~~~~~~~-----------------------~g-~~-----~~~~~ 395 (470)
....-++.++++.++.+.+++.|++++ | +.+..+. .+ ++ +.+..
T Consensus 417 -~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~ 495 (715)
T 3n75_A 417 -KGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLT 495 (715)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEEC
T ss_pred -HhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEc
Confidence 011233345555555556666655442 2 2222221 01 11 22233
Q ss_pred cCccCCcccC--CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 396 STYYGSEAEG--FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 396 ~~~~~~~~~~--~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
++. + ..+ .+...+...+.+.|. ++||.+--. ...++-+-++. ++++++..++.|.++-+.+
T Consensus 496 ~~~-~--~~G~~~~~Gi~g~~~~~~L~-~~~I~~E~~----d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~ 560 (715)
T 3n75_A 496 PGM-E--KDGTMSDFGIPASIVAKYLD-EHGIVVEKT----GPYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (715)
T ss_dssp SCB-C--TTSCBCSSCCCHHHHHHHHH-HTTCCCSEE----ETTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC-C--CCCccccCCCcHHHHHHHHH-HCCCEEEec----CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 321 0 000 000125567777764 558865332 23455555553 7788888887777665433
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=170.13 Aligned_cols=312 Identities=9% Similarity=0.056 Sum_probs=203.8
Q ss_pred CChHHHHHHHHHHHHcC----CC-----CCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHHHHHHHHHh
Q 012124 107 DTPVLIAEAGINAIREG----FT-----RYT--PNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAV 174 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~----~~-----~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~al~~~~~~l 174 (470)
+.|+.+++++.+.+.+. .. ..+ -..-+.+.|+.+++++ |.+ ++++|++ |+|+++++++++..+
T Consensus 37 ~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll----~~~-~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 37 MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLL----NIP-SNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHH----TCC-TTEEEEEEESCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHh----CCC-CCceEEEEcCCchHHHHHHHHhc
Confidence 35788888887655321 10 111 1234567788888876 431 2357888 699999999999999
Q ss_pred cCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCc-CCCCCccCHHhHhhhccCCceEEEEcCCCCCcccC-CCHHHHH
Q 012124 175 CSPGDEVIIPAPFWVSY--PEMARIADATPVILPTR-ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLLD 250 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~-~s~~~~~ 250 (470)
+++||+|++..-++.+. ...++..| ++..++.+ .+.+..++++.++.++++++++|.+++..|.||+. .+ ++
T Consensus 112 ~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~p---i~ 187 (386)
T 3qm2_A 112 LGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDE---TP 187 (386)
T ss_dssp CTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCC---CC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCc---hh
Confidence 99999987544433332 23456678 88888886 12333368888999999999999888888889996 67 44
Q ss_pred HHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH-------
Q 012124 251 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC------- 323 (470)
Q Consensus 251 ~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l------- 323 (470)
+|. + |+++++|.+.+. +..+..+..+ + +.+.|..|.+|.+| +|+++..+++++.+
T Consensus 188 ~i~-----~-g~~~~vDa~qs~----g~~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~ 249 (386)
T 3qm2_A 188 DFG-----P-EVVVTADFSSTI----LSAPLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSI 249 (386)
T ss_dssp CCC-----T-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGG
T ss_pred hhc-----C-CCEEEEEccccc----CCCCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcH
Confidence 443 7 899999999875 2233344333 2 45688899998666 78888776653211
Q ss_pred ---HHH-hh-hccCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCC-eec-CC--CceEEEe
Q 012124 324 ---NKI-QS-QFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP--QGAFYLF 392 (470)
Q Consensus 324 ---~~~-~~-~~~~~~~~~~q~a~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~-~~--~~g~~~~ 392 (470)
... .. .....++.....++.++++. ..+ .++.+.++.++.++++++.|+++ |+ ... .+ .+...+.
T Consensus 250 ~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~---~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~ 325 (386)
T 3qm2_A 250 LDYTVLNDNDSMFNTPPTFAWYLSGLVFKW---LKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVP 325 (386)
T ss_dssp GCHHHHHHC-------CCSHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEE
T ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEE
Confidence 111 11 11123455556666666653 123 47888899999999999999887 54 221 11 2334456
Q ss_pred eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
+.+|+.- -...+...|. ++||.+.+|... .+.+|+|+.. ++++++.+++.|+++.++
T Consensus 326 f~~~~~~-----------~~~~~~~~L~-~~gI~~~~g~~~--~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 326 FQLADNT-----------LDKVFLEESF-AAGLHALKGHRV--VGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EEESSGG-----------GHHHHHHHHH-HTTEECCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EECCCcc-----------ccHHHHHHHH-HCCCEEeCCCCC--cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 6776420 1256777665 459999887533 3569999987 899999999999998875
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-17 Score=165.14 Aligned_cols=351 Identities=15% Similarity=0.122 Sum_probs=211.9
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCC---CCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFT---RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~---~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+|+.+||+..|. ..+.. ++.+.+++.+++.+..+ .+.+. +....+++.+.+.... -..+.+++++++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~----~~~~~lae~L~~~~p~-~~~~~v~f~~sGsE 136 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPY----EGYVAVTEQLNRLTPG-DHAKRTVLFNSGAE 136 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCC----HHHHHHHHHHHHHSSC-SSCEEEEEESSHHH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCc----HHHHHHHHHHHHhCCC-CCCcEEEEeCChHH
Confidence 678899998884 44444 78999999998876321 12122 3334455555543321 12457899999999
Q ss_pred HHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cC-------------CEEEEecCcC----CCCCccCHHhH-----
Q 012124 166 SILQAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRI----SENFLLDPKVL----- 220 (470)
Q Consensus 166 al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g-------------~~~~~v~~~~----~~~~~~d~~~l----- 220 (470)
|.+.+++... ...+.|+..+-+|++....+.. .+ ..+..+|... .....-+.+.+
T Consensus 137 A~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 216 (456)
T 4atq_A 137 AVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAIT 216 (456)
T ss_dssp HHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHH
Confidence 9999998642 2347888899999987654322 11 1234444321 01001122332
Q ss_pred --hhhcc-CCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEE
Q 012124 221 --ESKLT-EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLT 295 (470)
Q Consensus 221 --~~~l~-~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 295 (470)
++.+. +++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..|...+... .....+.++
T Consensus 217 ~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~-gillI~DEV~tG~GRtG~~~a~e~~gv~PD------ 289 (456)
T 4atq_A 217 MIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK-GIVFIADEVQSGFCRTGEWFAVDHEGVVPD------ 289 (456)
T ss_dssp HHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTCCCS------
T ss_pred HHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc-CCceEecccccccCCccccccccccCCCCc------
Confidence 22222 25666666555655675 56788999999999999 99999999999864333211 111122222
Q ss_pred EeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
+-+++|.+| .|+.+|.+++.+++.+.+.......+++.++++..++.+.|+.-.. ++.+++.++.-...++.|.+...
T Consensus 290 ivt~gK~lg-gg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~ 367 (456)
T 4atq_A 290 IITMAKGIA-GGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQ-HDLNGRARHIEELALGKLRELAA 367 (456)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccc-CcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 446889998 9999999999999988876666667888999999999888863110 12222222211112222222222
Q ss_pred cCCC--CeecC--CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHH
Q 012124 376 ELEG--VKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTT 449 (470)
Q Consensus 376 ~~~g--~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~ 449 (470)
+++. -.++. ..-|+++.+++.+....... ......+++.++++ ||.+.++..+ .+.|||.... ++++
T Consensus 368 ~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~----~~~~~~v~~~~~~~-Gvl~~~~g~~--~~~irl~PpL~it~~~ 440 (456)
T 4atq_A 368 ELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPN----AELTKAVAAACLKE-GVIILTCGTY--GNVIRLLPPLVISDEL 440 (456)
T ss_dssp HCC-----CEEEEEEETTEEEEEEBCTTSCCBC----HHHHHHHHHHHHHT-TEECEEECTT--SCEEEECCCTTCCHHH
T ss_pred hcccccCCceEEeeecceEEEEEEecCCCCCcC----HHHHHHHHHHHHHC-CCEEEecCCC--CCEEEEECCCCCCHHH
Confidence 2221 11111 12356566776432100000 00134677777766 9988765332 3679998664 9999
Q ss_pred HHHHHHHHHHHHHh
Q 012124 450 LQAAVERIKKGLLT 463 (470)
Q Consensus 450 i~~~l~~l~~~l~~ 463 (470)
+++++++|+++++.
T Consensus 441 id~~l~~l~~al~a 454 (456)
T 4atq_A 441 LIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=166.62 Aligned_cols=352 Identities=13% Similarity=0.047 Sum_probs=210.7
Q ss_pred CeEEccCCC--CCCCC--hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGE--PDFDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~--~~~~~--~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
.++|+..|. ..+.. ++.+.+++.+++.+-.+ +.......+....+++.|.+..+.. ..+.+++++++++|.+.+
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h-~~~~~~~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA~E~A 458 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGH-VMFPENVYEPALKCAELLLDGVGKG-WASRVYFSDNGSTAIEIA 458 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSS-CCCTTEECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccc-ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHHHHHH
Confidence 467777652 23332 68899999998876221 1111122355556777776544311 136899999999999998
Q ss_pred HHHhc-----CCC------------CeEEEcCCCCCChHHH-HHHcCCE---------------E-------------EE
Q 012124 171 VLAVC-----SPG------------DEVIIPAPFWVSYPEM-ARIADAT---------------P-------------VI 204 (470)
Q Consensus 171 ~~~l~-----~~g------------d~Vlv~~p~y~~~~~~-~~~~g~~---------------~-------------~~ 204 (470)
++... ..| .+|+..+-+|++-... +...|.. + ..
T Consensus 459 lK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 538 (831)
T 4a0g_A 459 LKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538 (831)
T ss_dssp HHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred HHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence 88752 122 3688888888875543 3333311 0 01
Q ss_pred ecCcCC------C--CCccC------------------HHhHhhhcc--------CCceEEEEcCC-CCCcccC-CCHHH
Q 012124 205 LPTRIS------E--NFLLD------------------PKVLESKLT--------EKSRLLILCSP-SNPTGSV-YPKNL 248 (470)
Q Consensus 205 v~~~~~------~--~~~~d------------------~~~l~~~l~--------~~~~~i~l~~p-~nPtG~~-~s~~~ 248 (470)
++.... + .+ -+ .+.|++.++ +++.+|++... ++..|.. .+++.
T Consensus 539 ~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~ 617 (831)
T 4a0g_A 539 ISLPESFSEIAPEYGTF-TSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF 617 (831)
T ss_dssp EECCTTSCCCCSSTTEE-SCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHH
T ss_pred ecCCccccccccccccc-cchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHH
Confidence 111100 0 00 01 256777764 24556666554 7888864 58899
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc-ceeeEEEcCHHHHHHHHHH-
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI- 326 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~r~G~~~~~~~~~~~l~~~- 326 (470)
+++|.++|++| |+++|.||++..|...+... ....+.- ... +.+|+|.++ .| +++|++++++++++.+...
T Consensus 618 L~~l~~lc~~~-gilLI~DEV~tGfGRtG~~f-a~e~~gv-~PD---iitlsK~L~-gG~~Plgav~~~~~i~~~~~~~~ 690 (831)
T 4a0g_A 618 QRVLVNECRNR-KIPVIFDEVFTGFWRLGVET-TTELLGC-KPD---IACFAKLLT-GGMVPLAVTLATDAVFDSFSGDS 690 (831)
T ss_dssp HHHHHHHHHHT-TCCEEEECTTTTTTTTSBSS-THHHHSS-CCS---EEEECGGGG-TTSSCCEEEEECHHHHHTTCSSC
T ss_pred HHHHHHHHHHc-CCeEEEEcCccccccCCCch-hhHhcCC-CCc---EEEEecccc-cCccCcEEEEECHHHHHHHhccc
Confidence 99999999999 99999999999875544322 1111111 111 347999998 68 7999999999999887542
Q ss_pred -----hhhccCCCChHHHHHHHHHHhcCCC--ChHHHHHHHHHHHH-HHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 327 -----QSQFTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRE-RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 327 -----~~~~~~~~~~~~q~a~~~~l~~~~~--~~~~~~~~~~~~~~-~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
....+++.+++.+.++.+.|+.-.. ..+.+.+..+.+++ .++.+.+.+.+.+.+..... .|+++.+++...
T Consensus 691 ~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg-~Gl~~~iel~~~ 769 (831)
T 4a0g_A 691 KLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVV-IGTLFALELKAD 769 (831)
T ss_dssp GGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE-ETTEEEEEEC--
T ss_pred ccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEee-cccEEEEEEecC
Confidence 1335678899999988887763100 01111111111111 01234444555555543333 345566676431
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
... ... .......+.+.|+++ ||.+.|+ .+.+|++... ++++|++++++|+++++++.+
T Consensus 770 ~~~--~~~-~~~~a~~~~~~l~e~-Gv~v~p~-----g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~~ 830 (831)
T 4a0g_A 770 ASN--SGY-ASLYAKSLLIMLRED-GIFTRPL-----GNVIYLMCGPCTSPEICRRLLTKLYKRLGEFNR 830 (831)
T ss_dssp ----------CHHHHHHHHHHHHT-TEECCCB-----TTEEEEECCTTCCHHHHHHHHHHHHHHHTTTCC
T ss_pred ccc--ccc-chHHHHHHHHHHHHC-CcEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 000 000 001245677887765 9999885 3689998554 999999999999999987754
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.2e-14 Score=137.26 Aligned_cols=310 Identities=18% Similarity=0.190 Sum_probs=199.3
Q ss_pred HHHHHHH-HHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC---C-CeEEEcCCCCCChHHHHHHcCCEEEEecCcC
Q 012124 135 ELRSAIC-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP---G-DEVIIPAPFWVSYPEMARIADATPVILPTRI 209 (470)
Q Consensus 135 ~lr~~ia-~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~---g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 209 (470)
.|-+.++ +|++. .|++ .....++++|++.++..++.+.+++ | |.|+++.-++.+....+...|++++.++...
T Consensus 116 ~ltn~l~ld~L~~-~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~ 193 (501)
T 3hl2_A 116 KITNSLVLDIIKL-AGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 (501)
T ss_dssp HHHHHHHHHHHHH-TTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred HHHHHHHHHHHHH-cCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence 3444444 45544 5876 3356889999997777777776654 4 9999999999999999999999999998732
Q ss_pred -CCCCccCHHhHhhhccC---CceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc-cCCCCcccc
Q 012124 210 -SENFLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSF 283 (470)
Q Consensus 210 -~~~~~~d~~~l~~~l~~---~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~ 283 (470)
++..++|++.+++++++ +..+++++++ .|-.+.+-+ +++|+++|++| |+++++|++|+... +....+...
T Consensus 194 d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA 269 (501)
T 3hl2_A 194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQG 269 (501)
T ss_dssp ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHH
Confidence 23577999999999954 2334444444 554445556 99999999999 99999999998633 111111111
Q ss_pred cccCCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Q 012124 284 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 362 (470)
Q Consensus 284 ~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 362 (470)
..+. .-.+++.|..|.+-+| +..|.+. -++++++++..... ...+........+..+.. +.+.++++.++
T Consensus 270 ~~~G---rAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~l---Gr~Gy~~ll~e 340 (501)
T 3hl2_A 270 ARVG---RIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYP--GRASASPSLDVLITLLSL---GSNGYKKLLKE 340 (501)
T ss_dssp HHHS---CCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSC--SCBCSHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcC---CCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 1221 1447899999998433 3333443 36677777644221 112233344344555554 35667788888
Q ss_pred HHHHHHHHHHHhccCC---CCeec-CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCE---E-EECCC---
Q 012124 363 FRERRDFLVKSFGELE---GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV---A-LVPGD--- 431 (470)
Q Consensus 363 ~~~~~~~l~~~L~~~~---g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI---~-v~pg~--- 431 (470)
..+..+++.+.|+++. |-++. .+...+.+.+.+...- .. ...+...+-..|..+ +| - |.+|.
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~-~~-----~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~ 413 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLD-EH-----RDKAVTQLGSMLFTR-QVSGARVVPLGSMQT 413 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSC-TT-----TSCHHHHHHHHHHHT-TCCSCEEECTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccccc-cc-----ccccHHHHHHHHHhc-CCCcceeecCCCceE
Confidence 8888888888888742 33443 2334455666664320 00 001355677777766 44 3 34554
Q ss_pred -------CCCC------CCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 432 -------AFGD------DTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 432 -------~f~~------~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
.|+. -.|+-++.+. +.+|++.++.+|++++.+++.
T Consensus 414 i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 414 VSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp ETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3442 2478777765 999999999999999987653
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=133.07 Aligned_cols=334 Identities=15% Similarity=0.093 Sum_probs=199.7
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcC-CCC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCC--cEEEecChHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREG-FTR------YTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQSI 167 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~--~i~it~g~~~al 167 (470)
|.|-..++- .++.+.+++...+.+. .-+ |+.-.-..++.....++..+.||...... ||-.-+| ++|.
T Consensus 57 ieLIASEN~--~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SG-s~AN 133 (490)
T 3ou5_A 57 LELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG-SPAN 133 (490)
T ss_dssp EECCTTCCC--CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH-HHHH
T ss_pred ceEecCCCc--CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCH-HHHH
Confidence 666555553 4677787777777653 222 32222334555555677778888543221 4444444 5667
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSP 236 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p 236 (470)
..++.+|++|||+|+-.+....++... +...| .+.+++++++++ ..+|.|.+++... .++|+|+.-.-
T Consensus 134 ~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t-~~IDyd~~~~~A~~~kPklIi~G~S 212 (490)
T 3ou5_A 134 LAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT-GLIDYNQLALTARLFRPRLIIAGTS 212 (490)
T ss_dssp HHHHHHHCC-CCCEECBC----------------------------CBCEETTT-TEECHHHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCC-CcccHHHHHHHHhhcCCCeEEECCc
Confidence 778999999999999888766655321 11122 355666666544 4699999999874 48999887655
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc
Q 012124 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 315 (470)
Q Consensus 237 ~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~ 315 (470)
.+| ..++ .+++.++|.+. |.+++.|-+|-. +.-++. .++..... .|+.+|.+|+| +|-|-|.+.+
T Consensus 213 aY~--r~id---~~~~reIAd~v-GA~Lm~DmAHiaGLVA~g~-~psP~~~A-----DvVTtTTHKTL--rGPrGG~Il~ 278 (490)
T 3ou5_A 213 AYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAKV-IPSPFKHA-----DIVTTTTHKTL--RGARSGLIFY 278 (490)
T ss_dssp SCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTS-SCCGGGTC-----SEEEEESSSTT--CSCSCEEEEE
T ss_pred cCc--cccC---HHHHHHHHhhc-ccEEEechhhhhhhhcccc-cCCccccc-----eEEeccccccc--cCCCceEEEe
Confidence 665 3556 67777778888 999999999764 333332 33322222 38889999997 7889999987
Q ss_pred CH---------------HHHHHHHHHhhhccCCCChHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 316 PK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 316 ~~---------------~~~~~l~~~~~~~~~~~~~~~q~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
.+ ++.+++.+...+...+.+-.-..|+.+ ++... .....+...++..++.+.|.+.|.+. |
T Consensus 279 ~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea--~~p~fk~Ya~qVv~NAkaLA~~L~~~-G 355 (490)
T 3ou5_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER-G 355 (490)
T ss_dssp ECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred ccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 65 467777776554443333333333322 23211 12334555666677888888888887 8
Q ss_pred CeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCC-CCCCcEEEEeec------CH
Q 012124 380 VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAF-GDDTCIRISYAA------SL 447 (470)
Q Consensus 380 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f-~~~~~iRls~~~------~~ 447 (470)
+++.. ...+..+++++... + .+..+ ++.++++.||.+. |+..- ..++.|||+... .+
T Consensus 356 ~~vvsGgTdnHlvLvDl~~~-g---------~tG~~-ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e 424 (490)
T 3ou5_A 356 YSLVSGGTDNHLVLVDLRPK-G---------LDGAR-AERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp CEEGGGSCSSSEEEEECGGG-T---------CCHHH-HHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred CeeecCCCCceEEEEecccc-C---------CCHHH-HHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCH
Confidence 88763 23345577787432 1 13444 4456677899885 44310 124689999652 67
Q ss_pred HHHHHHHHHHHHHHH
Q 012124 448 TTLQAAVERIKKGLL 462 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~ 462 (470)
+++++..+-|.+++.
T Consensus 425 ~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 425 DDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777776653
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=132.90 Aligned_cols=313 Identities=17% Similarity=0.171 Sum_probs=191.5
Q ss_pred CcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCC----CCeEEEcCCCCCChHHHHHHcCCEEEEecC
Q 012124 132 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPT 207 (470)
Q Consensus 132 g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 207 (470)
+...+.+.+..++.+..|++ +....++++|++.+..+++.+.+++ ++.|+++.-+|.+....+...|+.++.++.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence 34567778888888778875 3345688888875555454444443 899999999999999999999999998876
Q ss_pred cC-CCCCccCHHhHhhhccC---CceEEEEcCC-CCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc
Q 012124 208 RI-SENFLLDPKVLESKLTE---KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 282 (470)
Q Consensus 208 ~~-~~~~~~d~~~l~~~l~~---~~~~i~l~~p-~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~ 282 (470)
.. ++.+.+|++.|++++++ +.+++++.+| .+.+|.+-+ +++|+++|++| |+++++|++|+..... ...
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~-gi~l~VD~A~G~~~~~---~~~ 246 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSK---CMH 246 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHH---HHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHC-CCeEEEECCCchhhhh---hHh
Confidence 42 23567999999999954 3455566566 455677777 99999999999 9999999999853211 111
Q ss_pred c--cccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHH
Q 012124 283 F--ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 359 (470)
Q Consensus 283 ~--~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 359 (470)
+ ..+.. ..-..++.|.+|.+. .-...+++.. +++.++.+..... ...+..++.......+..| .+.+++.
T Consensus 247 l~~~a~~~-~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~~G---~~g~~~~ 319 (450)
T 3bc8_A 247 LIQQGARV-GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLSLG---CSGYRKL 319 (450)
T ss_dssp HHHHHHHH-SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHhcc-cCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHHHH---HHHHHHH
Confidence 1 11100 122367889999985 4445566664 6666665544221 1122333434444444432 4455566
Q ss_pred HHHHHHHHHHHHHHhccCC---CCeecCCC-ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcC--CEEEEC----
Q 012124 360 VKAFRERRDFLVKSFGELE---GVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA--QVALVP---- 429 (470)
Q Consensus 360 ~~~~~~~~~~l~~~L~~~~---g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--gI~v~p---- 429 (470)
.+...+..+++.+.|++++ |..+.... .+.-..+.++.... ....|...+.-.+.... |.-+.+
T Consensus 320 i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~------~~~~D~tkl~i~~~~~g~sG~~v~~~~~~ 393 (450)
T 3bc8_A 320 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG------HHDKAVTQLGSMLFTRQVSGARAVPLGNV 393 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS------SSSCHHHHHHHHHHHTTCCSCEEECSCCE
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccc------cccCCCceeEEEecCCCCccceeeecccc
Confidence 5556666777777777665 66554322 11111222221100 00014556666654431 333331
Q ss_pred ----CCC---C------CCCCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 430 ----GDA---F------GDDTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 430 ----g~~---f------~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
|.. | +...++-+.++. ++++++.++++|++++++++
T Consensus 394 ~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~ 444 (450)
T 3bc8_A 394 QTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR 444 (450)
T ss_dssp EEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 1 123566666665 89999999999999876553
|
| >4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-15 Score=122.98 Aligned_cols=55 Identities=7% Similarity=-0.110 Sum_probs=52.1
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
-..|.+|.++||+||||.|+||++|||||+| ||.+|+.+|+|++++| +||||+..
T Consensus 24 ~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g-~G~~V~~~ 81 (134)
T 4ham_A 24 KEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG-KGTFIANQ 81 (134)
T ss_dssp HHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC-cEEEEeCC
Confidence 3579999999999999999999999999999 9999999999999999 99999754
|
| >3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-13 Score=112.66 Aligned_cols=55 Identities=9% Similarity=-0.139 Sum_probs=50.8
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
-..|.+|.++||++|||.|+||+.|||||+| ||.+|+++|+|++++| +|+||+..
T Consensus 21 ~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~-~G~~V~~~ 78 (126)
T 3ic7_A 21 CDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG-IGFFVASG 78 (126)
T ss_dssp HHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT-TEEEECTT
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC-CccEEccC
Confidence 3578999999999999999999999999999 9999999999999999 99999753
|
| >3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-13 Score=111.89 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=51.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|||||+| ||.+|+++|+|++++| +|+||+..
T Consensus 23 ~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~~ 80 (125)
T 3neu_A 23 KKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG-MGSFVTSD 80 (125)
T ss_dssp HHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC-CEEEEecC
Confidence 3578999999999999999999999999999 9999999999999999 99999763
|
| >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-13 Score=110.53 Aligned_cols=54 Identities=9% Similarity=-0.108 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|||.|+||++|||||+| ||.+|+.+|+|++++| +|+||+.
T Consensus 14 ~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g-~G~~V~~ 70 (129)
T 2ek5_A 14 EDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG-IGMFVSA 70 (129)
T ss_dssp HHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT-TEEEECT
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC-CEEEEec
Confidence 3578999999999999999999999999999 9999999999999999 9999975
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-13 Score=109.21 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++|||.|+||++|||||+| ||.+|+++|+|++++| +|+||+.
T Consensus 19 ~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~-~G~~V~~ 75 (113)
T 3tqn_A 19 VEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG-LGMLVKA 75 (113)
T ss_dssp HHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECT
T ss_pred HHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEEeC
Confidence 4578999999999999999999999999999 9999999999999999 9999975
|
| >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-13 Score=109.15 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|||.|+||+.|||||+| ||.+|+.+|+|++++| +||||+.
T Consensus 21 ~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V~~ 77 (126)
T 3by6_A 21 KNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG-KGTFITG 77 (126)
T ss_dssp HHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECS
T ss_pred HHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEEcc
Confidence 3578999999999999999999999999999 9999999999999999 9999975
|
| >3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-12 Score=114.08 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=49.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|||||+| |+++|+++|+|+.++| +||||...
T Consensus 19 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~~ 76 (236)
T 3edp_A 19 KDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNG-VGLYVQPK 76 (236)
T ss_dssp HHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECC-ceEEEccC
Confidence 3579999999999999999999999999999 9999999999999999 99999653
|
| >1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-12 Score=114.84 Aligned_cols=54 Identities=13% Similarity=-0.108 Sum_probs=51.4
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||+||||.|+||++|||||+| |+.+|+.+|+|+.++| +||||+.
T Consensus 17 ~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g-~G~~V~~ 73 (239)
T 1hw1_A 17 IESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG-KPTKVNN 73 (239)
T ss_dssp HHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-EEEEECC
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC-CCcEeeC
Confidence 3578999999999999999999999999999 9999999999999999 9999975
|
| >2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-11 Score=110.55 Aligned_cols=55 Identities=11% Similarity=-0.108 Sum_probs=6.9
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
....|.+|.++||++|||.|+||++|||||+| |+++|+++|+|+.++| +||||..
T Consensus 25 l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~ 82 (247)
T 2ra5_A 25 LEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRG-VGTQVVH 82 (247)
T ss_dssp -------------------------------------------CEEEEEC---------
T ss_pred HHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC-ceeEEec
Confidence 45679999999999999999999999999999 9999999999999999 9999964
|
| >2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-11 Score=111.72 Aligned_cols=54 Identities=11% Similarity=-0.020 Sum_probs=51.3
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|||.|+||++|||||+| |+++|+++|+|++++| +||||+.
T Consensus 20 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~ 76 (243)
T 2wv0_A 20 KTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKG-RGTFVSK 76 (243)
T ss_dssp HHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SCEEECC
T ss_pred HHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCC-CeEEEeC
Confidence 3578999999999999999999999999999 9999999999999999 9999965
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-11 Score=93.41 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=51.1
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
..|.+|.+.+|++|||.++||+.|+||++| |+.+|+++|+|++++| +|+||...
T Consensus 22 ~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g-~G~~v~~~ 78 (102)
T 1v4r_A 22 TLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA-LGTVVEKN 78 (102)
T ss_dssp HHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT-TEEESCSC
T ss_pred HHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-CeEEEccC
Confidence 568999999999999999999999999999 9999999999999999 99999754
|
| >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-11 Score=113.21 Aligned_cols=55 Identities=9% Similarity=-0.049 Sum_probs=50.0
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|||||+| |+++|+++|+|+.++| +||||...
T Consensus 39 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~~ 96 (272)
T 3eet_A 39 RKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSG-SGTYVRER 96 (272)
T ss_dssp HHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC---EEECCC
T ss_pred HHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-ceEEEecC
Confidence 3568999999999999999999999999999 9999999999999999 99999764
|
| >3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-11 Score=109.54 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=51.6
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||+++||||+| |+++|+++|+|+.++| +||||...
T Consensus 15 ~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g-~G~~V~~~ 72 (239)
T 3bwg_A 15 ETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG-SGIFVRKH 72 (239)
T ss_dssp HHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC-ceEEEecC
Confidence 3568899999999999999999999999999 9999999999999999 99999753
|
| >3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-11 Score=107.80 Aligned_cols=51 Identities=8% Similarity=-0.143 Sum_probs=47.9
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
..|. | ++||++|||.|+||++|||||+| |+++|+++|+|+. +| +||||...
T Consensus 25 ~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g-~Gt~V~~~ 78 (248)
T 3f8m_A 25 RMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RG-RTTVVARP 78 (248)
T ss_dssp HHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ET-TEEEECCC
T ss_pred HHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CC-CEEEEccC
Confidence 4577 8 99999999999999999999999 9999999999999 99 99999764
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-11 Score=91.23 Aligned_cols=52 Identities=8% Similarity=-0.112 Sum_probs=48.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhh--cCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA--CSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~--g~sG~~V~~ 63 (470)
..|. |.++||++|||.++||+.|||||+| |+.+|+++|+|+.++ + +|+||+.
T Consensus 31 ~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~-~G~~V~~ 87 (102)
T 2b0l_A 31 EHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGM-KGTYIKV 87 (102)
T ss_dssp HHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-SCEEEEE
T ss_pred HHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCC-CcEEEec
Confidence 4577 9999999999999999999999999 999999999999999 5 8999964
|
| >3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-10 Score=104.62 Aligned_cols=53 Identities=4% Similarity=-0.111 Sum_probs=50.2
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||+||| .++||++|||||+| |+.+|+.+|+|+.++| +|+||+.
T Consensus 26 ~~~I~~g~l~pG~~L~-E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~-~G~~V~~ 81 (222)
T 3ihu_A 26 MSGLELGTFVPGQRLV-ETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH-RGAVIRR 81 (222)
T ss_dssp HHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST-TCEEECC
T ss_pred HHHHHhCCCCCCCccC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC-CCeEEec
Confidence 3568999999999999 99999999999999 9999999999999999 9999965
|
| >2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-10 Score=103.07 Aligned_cols=55 Identities=5% Similarity=-0.089 Sum_probs=49.7
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhh--hhc-CCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV--MAC-SGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s--~~g-~sG~~V~~ 63 (470)
-..|.+|.++||+||||.|+||++|||||+| |+..|+.+|+|+. ++| .+|+||+.
T Consensus 14 ~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 14 TEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 3578999999999999999999999999999 9999999999999 643 17999975
|
| >3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-10 Score=101.54 Aligned_cols=53 Identities=11% Similarity=-0.124 Sum_probs=50.2
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++| |.++||++|||||+| |+..|+.+|+|+.++| +|+||+.
T Consensus 22 ~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~-~G~~V~~ 77 (218)
T 3sxy_A 22 KEMILNHELKLGEKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVVPR-VGFFVTD 77 (218)
T ss_dssp HHHHHTTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT-TEEEECC
T ss_pred HHHHHhCCCCCCCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CceEEcC
Confidence 356899999999999 899999999999999 9999999999999999 9999975
|
| >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-09 Score=99.89 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=49.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+|.++||++| |.++||++|||||+| |+.+|+.+|+|+.+++ +|+||..
T Consensus 39 ~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~-~G~~V~~ 93 (239)
T 2hs5_A 39 DAIIDGTFRPGARL-SEPDICAALDVSRNTVREAFQILIEDRLVAHELN-RGVFVRV 93 (239)
T ss_dssp HHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECC
T ss_pred HHHHcCCCCCcCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CeeEEeC
Confidence 56889999999999 899999999999999 9999999999999999 9999975
|
| >3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.2e-09 Score=94.57 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=49.8
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
-..|.+|.++||++| +.++||++|||||+| |+..|+.+|+|+.++| +|+||..
T Consensus 36 ~~~I~~g~l~pG~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~-~G~~V~~ 91 (237)
T 3c7j_A 36 RNAIIDGSLPSGTAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVETH-KGAVVAP 91 (237)
T ss_dssp HHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT-TEEEECC
T ss_pred HHHHHhCCCCCcCee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CceEEec
Confidence 346889999999999 899999999999999 9999999999999999 9999965
|
| >2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84 | Back alignment and structure |
|---|
Probab=97.62 E-value=7.3e-07 Score=73.64 Aligned_cols=46 Identities=0% Similarity=-0.248 Sum_probs=40.6
Q ss_pred ccccCcccCCCCCCCCCCCCccccC--------------Ccccc---ccccccccchhhhhhcCCCccccc
Q 012124 10 SFISNPVNFGHSKIPAQIPGSVSFP--------------SRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 10 ~~i~~~~~~~g~~lPs~R~La~~l~--------------vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
..|.+| .||+ |+||+.|| |||+| ||++|+++|+|+.+++ +|+||+.
T Consensus 61 ~~i~~g--~~G~-----~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~-~G~~Vt~ 123 (150)
T 2v7f_A 61 RVYLDG--PVGI-----ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG-KGRVITP 123 (150)
T ss_dssp HHHHHC--SBCH-----HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT-TEEEECH
T ss_pred HHHHhC--CCCH-----HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC-CceEECC
Confidence 346666 6665 99999999 99999 9999999999999989 9999965
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=97.15 E-value=9.6e-06 Score=63.89 Aligned_cols=50 Identities=4% Similarity=-0.165 Sum_probs=42.6
Q ss_pred cccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhh----hcCCCcccc
Q 012124 11 FISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM----ACSGVEEVQ 62 (470)
Q Consensus 11 ~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~----~g~sG~~V~ 62 (470)
.|..+.+.+|++ +|.++||+.+|||++| ++..|+++|+|+.+ ++ +|+||.
T Consensus 22 ~Il~~l~~~g~~-~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~-~g~~v~ 78 (110)
T 1q1h_A 22 DVLRILLDKGTE-MTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKD-SGWFIY 78 (110)
T ss_dssp HHHHHHHHHCSC-BCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC----CCCCEE
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCC-CceEEE
Confidence 456677789988 5899999999999999 99999999999988 78 898885
|
| >2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0002 Score=60.61 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=38.1
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhh
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRV 52 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s 52 (470)
-..|.+ .|.||.+| |.++||+.+||||+| |+.+|+++|+|+.
T Consensus 15 ~~~Il~-~l~~~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 15 DRNILN-ELQKDGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHH-HHHHCSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHH-HHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 345777 89999999 799999999999999 9999999999975
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.00051 Score=50.13 Aligned_cols=44 Identities=7% Similarity=-0.272 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
.||++++ ..+||+.||||++| +...|+++|+|+...++.|+|..
T Consensus 23 ~pg~~~t-~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i 69 (81)
T 1qbj_A 23 GEGKATT-AHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 69 (81)
T ss_dssp CTTCCBC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEE
T ss_pred CCCCCcC-HHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEE
Confidence 4777876 78999999999999 99999999999877554577653
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.00087 Score=47.09 Aligned_cols=35 Identities=3% Similarity=-0.290 Sum_probs=31.0
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|..+||+.||||++| ..+.|+++|+|.+ .. .|+|.
T Consensus 27 s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-~~-~G~y~ 64 (67)
T 2heo_A 27 AIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-PS-PKYWS 64 (67)
T ss_dssp EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-EE-TTEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-CC-CceEe
Confidence 467999999999999 9999999999988 56 78874
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.0012 Score=47.59 Aligned_cols=35 Identities=9% Similarity=-0.116 Sum_probs=31.1
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCC
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGV 58 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG 58 (470)
||.|+||+.||||.+| -.+.|+++|+|...+|..|
T Consensus 25 psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 8999999999999999 8899999999988865344
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.0036 Score=50.41 Aligned_cols=41 Identities=2% Similarity=-0.237 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 21 SKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 21 ~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
.+..|.++||+.++||++| ++..|++.|+|++..|..|.|+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~ 67 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYV 67 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceE
Confidence 3455789999999999999 9999999999999876345554
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.0035 Score=52.25 Aligned_cols=39 Identities=3% Similarity=-0.084 Sum_probs=35.3
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
.+.++||+.|+||++| +.+.|+++|||+.+++ +|++++.
T Consensus 55 ~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~-~~~~lT~ 96 (155)
T 2h09_A 55 ARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW-RGVFLTA 96 (155)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT-TEEEECH
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC-CceEECh
Confidence 4789999999999999 9999999999998888 8888764
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.0052 Score=44.36 Aligned_cols=41 Identities=7% Similarity=-0.228 Sum_probs=32.9
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|++++ ..+||+.||||++| ....|+++|+|+...+..|+|.
T Consensus 29 ~~~~t-~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 29 GKATT-AHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp SSCEE-HHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred CCCcC-HHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 44554 78999999999999 8899999999988754356665
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=91.82 E-value=0.0076 Score=44.00 Aligned_cols=37 Identities=3% Similarity=-0.175 Sum_probs=30.6
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhh---hhcCCCccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRV---MACSGVEEV 61 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s---~~g~sG~~V 61 (470)
+|..+||+.+|||++| ..+.|+++|+|+. +.| +|+|.
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~g-r~~~y 57 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRG-MATYW 57 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSS-SSCEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCC-CcEEE
Confidence 6899999999999999 8999999999983 234 55554
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=90.49 E-value=0.016 Score=47.49 Aligned_cols=43 Identities=5% Similarity=-0.224 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++.+..|.++||+.+++|+++ ...+|.+.|+|+++.|..|-|.
T Consensus 24 ~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 69 (143)
T 3t8r_A 24 EGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQ 69 (143)
T ss_dssp TTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCee
Confidence 455567899999999999999 9999999999999988445554
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.018 Score=48.04 Aligned_cols=43 Identities=2% Similarity=-0.269 Sum_probs=37.0
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++.+..|.++||+.+++|+++ ...+|.+.|+|+|+.|..|-|.
T Consensus 40 ~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~ 85 (159)
T 3lwf_A 40 IGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYV 85 (159)
T ss_dssp TTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceE
Confidence 455667899999999999999 9999999999999988445554
|
| >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.056 Score=51.49 Aligned_cols=28 Identities=4% Similarity=-0.218 Sum_probs=0.0
Q ss_pred ccCcccCCCCCCCCCCCCccccCCcccc
Q 012124 12 ISNPVNFGHSKIPAQIPGSVSFPSRYLH 39 (470)
Q Consensus 12 i~~~~~~~g~~lPs~R~La~~l~vs~~T 39 (470)
|+.|..+||+|+|+++++|+..|||++|
T Consensus 1 ~~~g~~~~g~~~~ti~diA~~agVS~~T 28 (355)
T 3e3m_A 1 MSLDSRKPGHRPVTMRDVAKAAGVSRMT 28 (355)
T ss_dssp ----------------------------
T ss_pred CCCcCcCCCCCCCcHHHHHHHhCCCHHH
Confidence 5679999999999999999999999999
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=89.91 E-value=0.015 Score=48.02 Aligned_cols=40 Identities=5% Similarity=-0.212 Sum_probs=32.8
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
+..+.++||+.++||+++ .+.+|.+.|+|+++.| .|-|+-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 346689999999999999 9999999999999988 777763
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=0.02 Score=46.74 Aligned_cols=39 Identities=3% Similarity=-0.231 Sum_probs=33.4
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
++.++||+.++||++| +.+.|+++|||+..++ .+++++.
T Consensus 23 ~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~-~~~~LT~ 64 (142)
T 1on2_A 23 ARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY-RGLVLTS 64 (142)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT-TEEEECH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC-ceEEEch
Confidence 6889999999999999 9999999999998765 5555543
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=86.33 E-value=0.058 Score=45.08 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEE 60 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~ 60 (470)
+|.+ .|.++||+.++||+++ ...+|.+.|+|+|+.|..|-|
T Consensus 25 ~~~~-~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy 68 (162)
T 3k69_A 25 RDSK-VASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGY 68 (162)
T ss_dssp TTSC-BCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEE
T ss_pred CCCC-cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCe
Confidence 4544 5789999999999999 999999999999998844434
|
| >3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=0.049 Score=51.17 Aligned_cols=37 Identities=5% Similarity=-0.155 Sum_probs=32.9
Q ss_pred CCCCCccccCCcccc---ccccccccch-hhhhhcCCCcccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEVQ 62 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V~ 62 (470)
|.-+||++|||||++ +.+.|+++|+ |++++| +||.+.
T Consensus 21 Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~-~GY~L~ 61 (323)
T 3rkx_A 21 SGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNH-KGHLLQ 61 (323)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETT-TEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCC-CeEEEe
Confidence 466999999999999 9999999999 788888 898764
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=84.01 E-value=0.043 Score=39.67 Aligned_cols=32 Identities=0% Similarity=-0.207 Sum_probs=27.9
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
-|..+||+.||||++| -...|+++|+|....+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 5678999999999999 7888999999988633
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=83.89 E-value=0.099 Score=41.75 Aligned_cols=35 Identities=3% Similarity=-0.066 Sum_probs=31.8
Q ss_pred CCCCCCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 20 HSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 20 g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
|..-||+.+||+.+++|.+| +.+.|+++|||+-+.
T Consensus 48 ~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 48 GVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 66679999999999999999 999999999997754
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=82.22 E-value=0.048 Score=41.82 Aligned_cols=36 Identities=3% Similarity=-0.190 Sum_probs=29.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhcCCCcc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEE 60 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~ 60 (470)
++..+||+.+|||++| ..+.|+++|||+.... .+..
T Consensus 37 ~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~-~~~~ 75 (109)
T 2d1h_A 37 ITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT-EGKK 75 (109)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-----
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc-ccCC
Confidence 5788999999999999 9999999999988755 4443
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=80.55 E-value=0.089 Score=39.41 Aligned_cols=36 Identities=6% Similarity=-0.183 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCccccCCcccc---ccccccccchhhhhh
Q 012124 18 FGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMA 54 (470)
Q Consensus 18 ~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~ 54 (470)
.||..+ +..+||+.++++++| ..+.|+++|||+..+
T Consensus 32 ~~g~~~-s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~ 70 (96)
T 2obp_A 32 NGATPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSV 70 (96)
T ss_dssp TTCCCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCc-CHHHHHHHhCCchhhHHHHHHHHHHCCCEEeec
Confidence 467776 899999999999999 999999999998754
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.12 E-value=0.087 Score=42.57 Aligned_cols=38 Identities=0% Similarity=-0.190 Sum_probs=31.9
Q ss_pred CCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccc
Q 012124 23 IPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQ 62 (470)
Q Consensus 23 lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~ 62 (470)
-++.++||+.++||++| +.+.|+++|||+... .+++++
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~--~~~~Lt 71 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE--DGVWIT 71 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEEC
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC--CeEEEC
Confidence 36899999999999999 999999999998764 355544
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=80.07 E-value=0.083 Score=37.97 Aligned_cols=29 Identities=3% Similarity=-0.191 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
+..+||+.|+||..| =.++|+++|+|+..
T Consensus 18 sv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 567999999999999 99999999999877
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 470 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 1e-113 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-109 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 8e-97 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 3e-78 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 6e-74 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 9e-72 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 4e-68 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 2e-60 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 2e-52 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 3e-52 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-51 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-51 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 2e-50 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 5e-50 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 6e-50 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 4e-49 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 8e-49 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 6e-47 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 6e-47 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 3e-46 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 8e-46 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 1e-45 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-38 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 3e-36 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 5e-29 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 7e-22 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 2e-21 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 2e-19 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 1e-09 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 7e-06 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 336 bits (863), Expect = e-113
Identities = 176/396 (44%), Positives = 243/396 (61%), Gaps = 15/396 (3%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
L+ RV +V PS T+ I +A A+ G+ V +AGEPDF+TP I EA A+ +G TR
Sbjct: 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTR 62
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y P AG LR AI KL+ +NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAP
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
FWVSYPEM ++A+ TPVILPT + F + P+ + +T K++LL+ +PSNPTG VY
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTP 182
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 305
+ + IA++ + L VLSDEIYE I+Y A H S + P +ER++ +GF+K +AM
Sbjct: 183 DEVRAIAQVAVEAG-LWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+G++AGP V A KIQ TS + +Q +AA + V +M+ AF E
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ---DCVQEMLAAFAE 298
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RR +++ + + G++ +P GAFY+F + +S C LLD+ QV
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQV 348
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461
A VPG AFG D CIR+SYA L T++ +ER++K L
Sbjct: 349 ATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFL 384
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 325 bits (834), Expect = e-109
Identities = 163/394 (41%), Positives = 229/394 (58%), Gaps = 16/394 (4%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
LS RV A+KPS TVA+ +A L + GV ++ L AGEPDFDTP + EA A+ +G T
Sbjct: 3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKT 62
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 185
+Y P AG ELR A+ K + ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +
Sbjct: 63 KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLS 122
Query: 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245
P+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VYP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYP 182
Query: 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
K +L+ +AR+ +H ++SDEIYEH++Y + P E TLTVNG +KAFAM
Sbjct: 183 KEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAP---EHTLTVNGAAKAFAM 238
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TGWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R
Sbjct: 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR 298
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD L++ L G+K P GAFY+ +D S I E L +A V
Sbjct: 299 RRDLLLEGLTAL-GLKAVRPSGAFYVLMDTS-----------PIAPDEVRAAERLLEAGV 346
Query: 426 ALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
A+VPG F +R+SYA S L+ A+ER +
Sbjct: 347 AVVPGTDFAAFGHVRLSYATSEENLRKALERFAR 380
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 294 bits (754), Expect = 8e-97
Identities = 161/399 (40%), Positives = 222/399 (55%), Gaps = 20/399 (5%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 125
+LS R+ V S+ + D +A VI L GEPDFDTP I E A+ +G T
Sbjct: 1 ALSDRLELVSASEIRKLFD----IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT 56
Query: 126 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 184
Y PN G LELR AI KLK++NG+ P +I+V GA Q+ L + A G+EV+IP
Sbjct: 57 HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP 116
Query: 185 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244
P +VSY +A PV +PT + F L+ L+ +T+K+R LI+ SP NPTG+V
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL 176
Query: 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 304
K L+EIA V +H L+V+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FA
Sbjct: 177 TKKDLEEIADFVVEHD-LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 235
Query: 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364
MTGWRLG++A P + K Q + + Q A AL + V +M K +
Sbjct: 236 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALK-DERSWKAVEEMRKEYD 294
Query: 365 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424
RR + K E G+ +P+GAFY+F S+ +L +A+
Sbjct: 295 RRRKLVWKRLNE-MGLPTVKPKGAFYIFPRIR----------DTGLTSKKFSELMLKEAR 343
Query: 425 VALVPGDAFG--DDTCIRISYAASLTTLQAAVERIKKGL 461
VA+VPG AFG + +RISYA + L+ A++R+++ L
Sbjct: 344 VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 247 bits (631), Expect = 3e-78
Identities = 105/407 (25%), Positives = 185/407 (45%), Gaps = 26/407 (6%)
Query: 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIR 121
+ S R +V + A L + G+ VIRL G+P DF P + EA AI+
Sbjct: 2 IRASKRALSV-EYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK 60
Query: 122 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181
EG Y + G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE+
Sbjct: 61 EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEI 120
Query: 182 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 241
++P P + Y + + PV T E++ D + K+T++++ + + +P+NPTG
Sbjct: 121 LVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTG 180
Query: 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 301
++Y K L+EI I ++ + + + + +NG SK
Sbjct: 181 ALYDKKTLEEILNIAGEYE---IPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSK 237
Query: 302 AFAMTGWRL--GYIAGPKHFVAA---CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 356
+ TGWRL Y P++ ++ ++ ++ +Q A +A L + +
Sbjct: 238 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYL 294
Query: 357 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 416
+ +K +ERRD++ K E+ G+ ++PQGAFY+F G +N +
Sbjct: 295 KEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE---------VGPWKNDKEFV 345
Query: 417 RYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461
+L A V V G FG+ R + + L+ A++R +K +
Sbjct: 346 LDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFM 392
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 235 bits (600), Expect = 6e-74
Identities = 137/395 (34%), Positives = 220/395 (55%), Gaps = 22/395 (5%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
+S R++ + SKT+ + +A AL + G VI L AGEPDF TP + E + +++G +
Sbjct: 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 60
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
YT G ELR I ++ E +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P
Sbjct: 61 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 120
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
WVSY +A T ++ T +S+NF + +E L K++ +++ SP+NPTG VY +
Sbjct: 121 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 180
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
L+ + R+ K + + + TS + ++R + +NGFSK+ +MT
Sbjct: 181 EFLEGLVRLAKKRN--FYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT 238
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
GWR+GY+ + A +KIQS TS ++++Q A + AL + S MV+ F+ER
Sbjct: 239 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDN------SYMVQTFKER 292
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVA 426
++F+V+ ++ GVK EP+GAFYLF + C LL++ +VA
Sbjct: 293 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR-------------GDDVKFCERLLEEKKVA 338
Query: 427 LVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461
LVPG AF +R+S+A S+ L A++RI+ L
Sbjct: 339 LVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFL 373
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 231 bits (590), Expect = 9e-72
Identities = 54/391 (13%), Positives = 115/391 (29%), Gaps = 53/391 (13%)
Query: 95 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTR--YTPNAGTL----ELRSAICHKLKEE 147
+A+G+ F +A+ + R Y N + EL I +
Sbjct: 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 148 NGLSYTPDQILVSNGAKQSILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIAD 199
+ I+ G Q I V+++ +P +V+ APF+ + E + D
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 200 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259
+ + + + + ++ SP+NP G +
Sbjct: 177 KKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHA------------- 215
Query: 260 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 318
++ IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 216 --VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269
Query: 319 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFL 370
++ T G +Q + L A ++ + K RER +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329
Query: 371 VKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429
+ + E PQ + + + C ++
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQN 389
Query: 430 GDAFG-DDTCIRISYAASLTTLQAAVERIKK 459
G F +R+S + + +K
Sbjct: 390 GVGFEASSRYVRLSLIKTQDDFDQLMYYLKD 420
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 221 bits (564), Expect = 4e-68
Identities = 110/418 (26%), Positives = 181/418 (43%), Gaps = 31/418 (7%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-- 124
+ R++ + + V LA + V+ L G PDF P EA +A+ F
Sbjct: 3 QARRLDGIDYNPWVEFV----KLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFML 57
Query: 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVII 183
+YT G L + E G P + +LV+ G ++ A A+ GDEVII
Sbjct: 58 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 117
Query: 184 PAPFWVSYPEMARIADATPVILPTR----------ISENFLLDPKVLESKLTEKSRLLIL 233
PF+ Y M +A PV + + S N+ LDP L K T +++ L+L
Sbjct: 118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 177
Query: 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 293
+P+NP G V+ + L+ +A + +H ++ ++DE+Y+ ++Y H S ASLPGMWERT
Sbjct: 178 NTPNNPLGKVFSREELELVASLCQQHD-VVCITDEVYQWMVYDGHQHISIASLPGMWERT 236
Query: 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 353
LT+ K F+ TGW++G++ GP H + + + SQ A +
Sbjct: 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 296
Query: 354 EVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410
S F + G+K PQG+++L D S + + G ++
Sbjct: 297 RQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVD 356
Query: 411 --NSESLCRYLLDKAQVALVPGDAFGD-------DTCIRISYAASLTTLQAAVERIKK 459
++++ + +P F D IR + TLQA E+++K
Sbjct: 357 EPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 414
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 201 bits (511), Expect = 2e-60
Identities = 97/416 (23%), Positives = 170/416 (40%), Gaps = 29/416 (6%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG--- 123
L R S V LA A + L G PD+ P A A
Sbjct: 4 LPKRYQGSTKSVWVEYI----QLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPL 58
Query: 124 FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVI 182
+YT G L A+ + + P ++LV+ GA +++ + GDEVI
Sbjct: 59 ANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVI 118
Query: 183 IPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTEKSRLLILC 234
I PF+ Y M + A P +P + ++ ++LD LE+ EK++++I+
Sbjct: 119 IIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIIN 178
Query: 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 294
+P NP G V + L+ +A + K +L +SDE+YEH+++ P H +LPGMWERT+
Sbjct: 179 TPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTI 237
Query: 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 354
T+ K F++TGW++G+ GP+ + + ++ Q+A +
Sbjct: 238 TIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK 297
Query: 355 VVSKMVKAFRERRD---FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIE 410
+ + SF G+ + PQG +++ D+S+ +
Sbjct: 298 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDAR 357
Query: 411 NSESLCRYLLDKAQVALVPGDAFGDDT-------CIRISYAASLTTLQAAVERIKK 459
+++ + +P AF + +R + LQ A E ++K
Sbjct: 358 KDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRK 413
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 180 bits (457), Expect = 2e-52
Identities = 55/397 (13%), Positives = 131/397 (32%), Gaps = 38/397 (9%)
Query: 96 VIRLAAGEPDFDTPVL-----------IAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144
+I++ E +L + +I + G + A+ +
Sbjct: 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 97
Query: 145 KE--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 202
E N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 98 AEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVE 157
Query: 203 VILPTRISENFLLDPKVLESKLTEKSRLL------ILCSPSNPTGSVYPKNLLDEIARIV 256
++ S N + + +++ +L + + +
Sbjct: 158 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 217
Query: 257 AKHPRLLVLSDEIYEHIIYAPATHTSFASLP---------GMWERTLTVNGFSKAFAMTG 307
+ + ++SDEIY ++ + S + +W+R V SK + G
Sbjct: 218 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG 277
Query: 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367
+R+G I V A S F +S + + + ++
Sbjct: 278 FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQK 337
Query: 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427
S + G+ + ++D S E L + ++ + + +
Sbjct: 338 KL--VSGLQKSGISCLNGNAGLFCWVDMRHLLRSNT-----FEAEMELWKKIVYEVHLNI 390
Query: 428 VPGDAFG--DDTCIRISYAASLT-TLQAAVERIKKGL 461
PG + + R+ +A TL A++R+K +
Sbjct: 391 SPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 427
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 178 bits (452), Expect = 3e-52
Identities = 106/389 (27%), Positives = 177/389 (45%), Gaps = 21/389 (5%)
Query: 76 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE 135
P I Q +ALAQ I L+ G PDFD P + E + + +G +Y P G
Sbjct: 9 PQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQA 67
Query: 136 LRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 194
LR AI K + G D I V+ GA +++ A+ A+ GDEVI P + SY
Sbjct: 68 LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA 127
Query: 195 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 254
++ V +F +D + + L+E++RL+IL +P + + +
Sbjct: 128 IALSG-GIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP-HNPSATVWQQADFAALW 185
Query: 255 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314
+ V+SDE+YEHI ++ H S + P + ER + V+ F K + MTGW++GY
Sbjct: 186 QAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV 245
Query: 315 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 374
P +I+ S++ A +A + A E + +R++RD LV +
Sbjct: 246 APAPI---SAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL 302
Query: 375 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 434
E +++ +G ++L +D+S + C++L + VA +P F
Sbjct: 303 NE-SRLEILPCEGTYFLLVDYSAV---------STLDDVEFCQWLTQEHGVAAIPLSVFC 352
Query: 435 DD----TCIRISYAASLTTLQAAVERIKK 459
D IR+ +A +TL AA ER+++
Sbjct: 353 ADPFPHKLIRLCFAKKESTLLAAAERLRQ 381
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 178 bits (451), Expect = 1e-51
Identities = 69/399 (17%), Positives = 147/399 (36%), Gaps = 37/399 (9%)
Query: 96 VIRLAAGEP--DFDT---------PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144
VI++ E D I GI + + + G E R AI +
Sbjct: 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKA-IANFQDYHGLPEFRKAIAKFM 96
Query: 145 KEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 202
++ G + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 97 EKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQ 156
Query: 203 VIL-------PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 255
+I +I+ + + K K + LIL +PSNP G+ K+ L +
Sbjct: 157 LIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSF 216
Query: 256 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAMTGWR 309
+H LV + + P + L + V SK + G+R
Sbjct: 217 TNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 310 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369
+G I V C + S F ++ + + ++ + + F
Sbjct: 277 VGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHF 336
Query: 370 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVP 429
+ E+ G+K + + ++D ++ SL R +++ ++ + P
Sbjct: 337 T--NGLEVVGIKCLKNNAGLFCWMDLRPLLREST-----FDSEMSLWRVIINDVKLNVSP 389
Query: 430 GDAFG--DDTCIRISYAAS-LTTLQAAVERIKKGLLTLR 465
G +F + R+ +A T+ A+ RI++ + +
Sbjct: 390 GSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 177 bits (448), Expect = 2e-51
Identities = 69/389 (17%), Positives = 118/389 (30%), Gaps = 48/389 (12%)
Query: 97 IRLAAG---EPDFDTPVLI----AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 149
+ L+ G D P L AEA +NA G + Y P G R AI L +
Sbjct: 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADH 88
Query: 150 LSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPVIL 205
++ S V A P V + P W ++ + A
Sbjct: 89 PVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTY 148
Query: 206 PTRISENFLLDPKVLES---KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 262
P + L + L +S +L+ NPTG+ + D + I K L
Sbjct: 149 PWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEI-LKAREL 207
Query: 263 LVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 321
+ D Y+ + ++ L N FSK F++ G R+G ++
Sbjct: 208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAE 267
Query: 322 ACNKIQSQF-------TSGASSISQKAGVAALGLGYAGGEVVS---KMVKAFRERRDFLV 371
A ++ Q S + + A L ++ +M R LV
Sbjct: 268 AAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELV 327
Query: 372 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGD 431
+ + P+ F ++ F S + L ++ V L+
Sbjct: 328 ------KVLSTEMPERNFDYLLNQRGM-------FSYTGLSAAQVDRLREEFGVYLIAS- 373
Query: 432 AFGDDTCIRISYAA-SLTTLQAAVERIKK 459
R+ A + +Q +
Sbjct: 374 -------GRMCVAGLNTANVQRVAKAFAA 395
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 174 bits (440), Expect = 2e-50
Identities = 97/405 (23%), Positives = 177/405 (43%), Gaps = 31/405 (7%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
S RV + S + A + GV + L G+PD TP + E I +
Sbjct: 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFER-IYENKPEVVY 59
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y+ +AG ELR A K + P+ +LV+NG ++IL + + +PGDE+++ P
Sbjct: 60 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 187 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246
F+ +Y A+IA + + R+ E F P+ LES + E+++ ++L +P NPTG VY K
Sbjct: 120 FYANYNAFAKIAGVKLIPVTRRMEEGF-AIPQNLESFINERTKGIVLSNPCNPTGVVYGK 178
Query: 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306
+ + + I +H L ++ DE+Y I++ ++ ++ + ++ SK F+
Sbjct: 179 DEMRYLVEIAERHG-LFLIVDEVYSEIVFRGEFASAL---SIESDKVVVIDSVSKKFSAC 234
Query: 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366
G R+G + + + +Q + Q V + + +RER
Sbjct: 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGL---LNLDDSFFDFVRETYRER 291
Query: 367 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL-----D 421
+ ++K E + ++P GAFY+ + +E++E R++L D
Sbjct: 292 VETVLKKLEEHGLKRFTKPSGAFYITAEL------------PVEDAEEFARWMLTDFNMD 339
Query: 422 KAQVALVPGDAFG-----DDTCIRISYAASLTTLQAAVERIKKGL 461
+ P F IRI+ L A++ + +GL
Sbjct: 340 GETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGL 384
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 173 bits (439), Expect = 5e-50
Identities = 58/429 (13%), Positives = 104/429 (24%), Gaps = 57/429 (13%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVLI----AEAGIN 118
S+ V +P + + L G D VL E I
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRK--VNLGVGAYRTDDCQPWVLPVVRKVEQRIA 61
Query: 119 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSY---------TPDQILVSNGAKQSILQ 169
Y P G E R+ ++ + + + + +
Sbjct: 62 NNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR 121
Query: 170 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV----LESKLT 225
+ V + +P W ++ + A +
Sbjct: 122 WYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181
Query: 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA- 284
E S ++ NPTG+ +IA + K L D Y+ ++A
Sbjct: 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASV-MKRRFLFPFFDSAYQGFASGNLEKDAWAI 240
Query: 285 -SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI------ 337
FSK F + R+G + + ++ SQ
Sbjct: 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPA 300
Query: 338 -SQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 393
+ L E V M R L L + G +
Sbjct: 301 QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL------KTPGTWNHIT 354
Query: 394 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQA 452
D F + YL+++ + L+P RI+ + L
Sbjct: 355 DQIGM-------FSFTGLNPKQVEYLINQKHIYLLPS--------GRINMCGLTTKNLDY 399
Query: 453 AVERIKKGL 461
I + +
Sbjct: 400 VATSIHEAV 408
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 172 bits (436), Expect = 6e-50
Identities = 109/398 (27%), Positives = 179/398 (44%), Gaps = 39/398 (9%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 126
L PR A K S I + + LAQ + + L G P P + EA A+ +
Sbjct: 3 LHPRTEAAKES----IFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ-DQ 56
Query: 127 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186
Y P AG LR A+ + P+ ++V++GA +++ + ++ PGDEV++ P
Sbjct: 57 YAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 187 FWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245
F+ Y A +A A ++ E F LD LE LT ++R L+L +P NPTG V+
Sbjct: 111 FFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFG 170
Query: 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305
+ L+ IAR+ H L ++SDE+Y+ + Y ERT TV K
Sbjct: 171 ERELEAIARLARAH-DLFLISDEVYDELYYGERPRRLR---EFAPERTFTVGSAGKRLEA 226
Query: 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365
TG+R+G+I GPK F+ ++ + A + Q AL L + + +R
Sbjct: 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRR 285
Query: 366 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 425
RRD L + G+++ P+G ++L + L+++A+V
Sbjct: 286 RRDLLAGGLRAM-GLRVYVPEGTYFLMAEL----------------PGWDAFRLVEEARV 328
Query: 426 ALVPGDAFGDDT----CIRISYAASLTTLQAAVERIKK 459
AL+P AF + R ++ + L A+ER+ +
Sbjct: 329 ALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGR 366
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 170 bits (431), Expect = 4e-49
Identities = 77/395 (19%), Positives = 148/395 (37%), Gaps = 16/395 (4%)
Query: 75 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTL 134
K ++ + + G V+ L+ + +F P + E + E YT T
Sbjct: 12 KNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTE 69
Query: 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 194
E + + +K+ + D I+ + G ++ AV PGD VII P + +
Sbjct: 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA 129
Query: 195 ARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEI 252
+ + + + + KL + ++ L+ CSP NP G V+ K+ L +I
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI 189
Query: 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 312
IV K +L + ++ I+ + + ++T+T SK F + G +
Sbjct: 190 KDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN 249
Query: 313 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372
I + TSG + + G + + + +R
Sbjct: 250 IIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDF 309
Query: 373 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432
+K +G + +IDF + +++ +++ KAQ+ G
Sbjct: 310 FEVNHPEIKAPLIEGTYLQWIDFR----------ALKMDHKAMEEFMIHKAQIFFDEGYI 359
Query: 433 FGDDT--CIRISYAASLTTLQAAVERIKKGLLTLR 465
FGD RI+ AA + +Q ++ER+ K L L+
Sbjct: 360 FGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 170 bits (430), Expect = 8e-49
Identities = 93/416 (22%), Positives = 168/416 (40%), Gaps = 32/416 (7%)
Query: 64 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 123
DVS+S V + ++D A + + +I+L+ G+P D +L + A I ++E
Sbjct: 2 DVSMSNHAGLV-FNPIRTVSDNAKP-SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 59
Query: 124 -----FTRYTPNAGTLELRSAICHKLKE------ENGLSYTPDQILVSNGAKQSILQAVL 172
Y P G+ E R A+ + E + D +++ +G IL A+
Sbjct: 60 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 119
Query: 173 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 232
A+C GD ++P P + Y + + R ++ D + +K++LLI
Sbjct: 120 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 179
Query: 233 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM--- 289
+ +PSNP GS + + E +A+ RL + SDEIY +++ + +
Sbjct: 180 VTNPSNPCGSNFSRKH-VEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET 238
Query: 290 WERTLTVNGFSKAFAMTGWRLGYIAGP------KHFVAACNKIQSQFTSGASSISQKAGV 343
+ + G +K + GWRLG++ F+ ++ + + G
Sbjct: 239 TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGE 298
Query: 344 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 403
A E + ++V E +L GE G+ + P+GA YL
Sbjct: 299 AL---LNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID------L 349
Query: 404 EGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459
E + I+ LL++ V ++PG F R++ + + AVERIK
Sbjct: 350 EKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKA 405
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 165 bits (417), Expect = 6e-47
Identities = 58/418 (13%), Positives = 109/418 (26%), Gaps = 55/418 (13%)
Query: 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVL--IAEAGINAIREGF 124
+ A + + D A + G I L G + TPVL + +A +
Sbjct: 4 NITAAPADPILGLADLFRADERPGK--INLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 125 TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQ----ILVSNGAKQSILQAVLAVCSPGD 179
T+ Y G E L + + + LA +
Sbjct: 62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 180 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSP 236
V + P W ++ + A +EN L ++ +L
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLT 295
NPTG +A++ + L L D Y+ + M + +
Sbjct: 182 HNPTGIDPTLEQWQTLAQL-SVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240
Query: 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-------GASSISQKAGVAALGL 348
+ +SK F + R+G ++ SQ + + L
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 349 GYAGGEV---VSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSE 402
++ M + + R V + E Q + F
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL------- 353
Query: 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 459
++ L ++ V V R++ A + + E I
Sbjct: 354 ---------TKEQVLRLREEFGVYAVAS--------GRVNVAGMTPDNMAPLCEAIVA 394
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 165 bits (417), Expect = 6e-47
Identities = 63/420 (15%), Positives = 115/420 (27%), Gaps = 57/420 (13%)
Query: 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVL--IAEAGINAIREGF 124
V P + +T+ + + L G + + VL + +A +
Sbjct: 6 HVEMGPPDPILGVTEAFKRDTNSKK--MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM 63
Query: 125 TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-----SPG 178
+ Y P AG + A EN ++ + + G + V A
Sbjct: 64 DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFS 123
Query: 179 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL---TEKSRLLILCS 235
+V +P P W ++ + R A + LD + EKS +L+
Sbjct: 124 RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC 183
Query: 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERT 293
NPTG + E+A + K LL D Y+ ++A
Sbjct: 184 AHNPTGVDPRQEQWKELASV-VKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242
Query: 294 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI-------SQKAGVAAL 346
+ ++K + G R G +++SQ + + L
Sbjct: 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 302
Query: 347 GLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYG 400
E V M R LV + + + Q + F
Sbjct: 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----- 357
Query: 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 459
L + + + RIS A + + + I +
Sbjct: 358 -----------KPEQVERLTKEFSIYMTKD--------GRISVAGVASSNVGYLAHAIHQ 398
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 163 bits (412), Expect = 3e-46
Identities = 69/411 (16%), Positives = 161/411 (39%), Gaps = 37/411 (9%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREGF 124
S + +K S+ + VI LA G P +T I + + + E
Sbjct: 7 FSEKAMLMKASEVRELLKLV-----ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHA 61
Query: 125 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 181
+ Y G LR A+ +++ + + +I+ G++Q++ +PGD +
Sbjct: 62 DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPI 121
Query: 182 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI----LCSPS 237
++ AP +++ + + D + +P + + +L ++ + + + +
Sbjct: 122 VVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQ 181
Query: 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 297
NP G + ++ + ++ L++ D Y + Y+ + R + +
Sbjct: 182 NPAGVTMSVDRRKKLLELANEYD-FLIVEDGPYSELRYSGEPTPPIKH-FDDYGRVIYLG 239
Query: 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 357
FSK G+R+G++A H + + ++ Q + GY E +
Sbjct: 240 TFSKIL-APGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIP 297
Query: 358 KMVKAFRERRDFLVKSFGE--LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 415
K+++ ++ RRD ++++ E EGV+ ++P+G ++ + ++
Sbjct: 298 KIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKL------------ 345
Query: 416 CRYLLDKAQVALVPGDAFGDDT----CIRISYA-ASLTTLQAAVERIKKGL 461
VA VPG+AF +R+++ T++ V R+ + +
Sbjct: 346 MMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 161 bits (406), Expect = 8e-46
Identities = 54/373 (14%), Positives = 128/373 (34%), Gaps = 17/373 (4%)
Query: 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 156
+ + DF T I EA + G Y+ E +AI H ++ +
Sbjct: 2 LPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKND-EFLAAIAHWFSTQHYTAIDSQT 60
Query: 157 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP-TRISENFLL 215
++ + + + G+ V+I P + ++ + T + + + ++ +
Sbjct: 61 VVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFC 120
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
D LE+ L + ++L EI + + + V+SDEI+ +++
Sbjct: 121 DMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW 180
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335
H ++ + SK+F + Y + G S
Sbjct: 181 GEQPHIPWS--NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS 238
Query: 336 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFID 394
S S A A + G + + ++ ++ + Q + ++D
Sbjct: 239 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLD 298
Query: 395 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD--TCIRISYAASLTTLQA 452
+ +L + L+++ +VA++PG +G++ +R++ + L+
Sbjct: 299 LR----------PLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEK 348
Query: 453 AVERIKKGLLTLR 465
V + + +R
Sbjct: 349 GVAGLINAIRAVR 361
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 162 bits (409), Expect = 1e-45
Identities = 62/431 (14%), Positives = 108/431 (25%), Gaps = 64/431 (14%)
Query: 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVLI----AEAGIN 118
+L + + P I + +A + L G + + VL AE I+
Sbjct: 3 TLFNNIELLPPDALFGIKQRYGQDQRATK--VDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60
Query: 119 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS----ILQAVLAV 174
Y G L S + + D+++ + I +
Sbjct: 61 NDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120
Query: 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES---KLTEKSRLL 231
P V + P W ++ + P +E LD + K E S +
Sbjct: 121 FFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV 180
Query: 232 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTSFASL 286
+ NPTG +I + L D Y+
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDA-IASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239
Query: 287 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 346
F+K M G R+G A I+ TS + I +
Sbjct: 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPP 299
Query: 347 GLG--------------YAGGEVVSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAF 389
G + + M + R L +L Q
Sbjct: 300 AYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGM 359
Query: 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLT 448
+ F + + + L + V LV R S A +
Sbjct: 360 FSFTGL----------------TPQMVKRLEETHAVYLVAS--------GRASIAGLNQG 395
Query: 449 TLQAAVERIKK 459
++ + I +
Sbjct: 396 NVEYVAKAIDE 406
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 142 bits (357), Expect = 2e-38
Identities = 56/414 (13%), Positives = 106/414 (25%), Gaps = 51/414 (12%)
Query: 72 NAVKPSKTVAITDQATALAQAGVS-VIRLAAG---EPDFDTPVL--IAEAGINAIREGFT 125
+KP I I L G + TP++ + A + T
Sbjct: 3 GNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT 62
Query: 126 R-YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 183
+ Y +G E + A+ + + S T V + + +P V +
Sbjct: 63 KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFV 122
Query: 184 PAPFWVSYPEMARIADATPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSPSNPT 240
P W ++ + +E + K + + +L+ NPT
Sbjct: 123 SDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPT 182
Query: 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGF 299
G+ + EIA I + L L D Y+ + L L
Sbjct: 183 GANLTLDQWAEIASI-LEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASC 241
Query: 300 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI--SQKAGVAALGLGYAGGE--- 354
SK F + R G + A Q A +
Sbjct: 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELR 301
Query: 355 -----VVSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGF 406
+ + R+ L +L G + +
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA----------- 350
Query: 407 GKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKK 459
+ + + ++ + +V RI+ A + T+ I +
Sbjct: 351 -----TPEQVKRIKEEFGIYMVGD--------SRINIAGLNDNTIPILARAIIE 391
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 136 bits (342), Expect = 3e-36
Identities = 64/419 (15%), Positives = 138/419 (32%), Gaps = 40/419 (9%)
Query: 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREGF 124
+S +K S I A A I G PD +T +AE I + +
Sbjct: 16 ISKIGQNMKSSIIREILKFA-----ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEY 70
Query: 125 ---TRYTPNAGTLELRSAICHKLKEENGLSY-TPDQILVSNGAKQSILQAVLAVCSPGDE 180
+Y+ G L+ I L+ G++ D ++ + G++Q++
Sbjct: 71 HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESY 130
Query: 181 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV------LESKLTEKSRLLILC 234
++ P ++ R A V++P L + K+ + + ++
Sbjct: 131 CVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVS 190
Query: 235 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 294
+ NP G + I K+ +V D F L
Sbjct: 191 NFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL 250
Query: 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 354
G R+G +AG K F+ + + + +I+ + L +
Sbjct: 251 NTFSK---VLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQ 307
Query: 355 VVSKM---VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 411
+ + + + L + F ++ GVK + +G ++++ + +
Sbjct: 308 LKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF-----------D 356
Query: 412 SESLCRYLLDKAQVALVPGDAFG----DDTCIRISYA-ASLTTLQAAVERIKKGLLTLR 465
+ + Y + +V VPG F +R+S+ + ++R+++ +L
Sbjct: 357 TWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYG 414
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 115 bits (288), Expect = 5e-29
Identities = 47/371 (12%), Positives = 99/371 (26%), Gaps = 37/371 (9%)
Query: 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 154
++ L+ F I E + T + ++ L +
Sbjct: 21 ALYDLSGLSGGFL----IDEKDKALLN---TYIGSSYFAEKVNEYGLKHLGGDEN----- 68
Query: 155 DQILVSNGAKQSILQAVLAVCSPGDEVII--PAPFWVSYPEMARIADATPVILPTRISEN 212
D+ + N +IL +LA+ P + P S +I +A
Sbjct: 69 DKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYF--------- 118
Query: 213 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 272
+ +K+ + + ++I S + ++ AK+ +V D+
Sbjct: 119 ESDKVGEILNKIDKDTLVIITGSTMDLKVIELEN--FKKVINT-AKNKEAIVFVDDASGA 175
Query: 273 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332
+ P + + S M G R G +AG K V ++F
Sbjct: 176 RVRLLFNQ------PPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGL 229
Query: 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 392
A L E + K + + ++ + +
Sbjct: 230 EAQPPLLAGIYR--ALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT 287
Query: 393 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQ 451
+ I+ + LL + + G +RI + +
Sbjct: 288 PTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSR-DAER 346
Query: 452 AAVERIKKGLL 462
I K ++
Sbjct: 347 IDDNYIIKAIV 357
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 94.5 bits (233), Expect = 7e-22
Identities = 65/366 (17%), Positives = 115/366 (31%), Gaps = 39/366 (10%)
Query: 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 155
++ +A PV + A I+ + + RY P+A L A+ +
Sbjct: 24 LLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALARHHQ------VPAS 75
Query: 156 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 215
IL NG +SI + ++ P + +
Sbjct: 76 WILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWS---LREADGWQ 132
Query: 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 275
+ LT L LC+P+NPTG + + LL IA L+L + + I +
Sbjct: 133 LTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH 192
Query: 276 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 335
+ P +W + +K +A+ G RLGY+ A + Q S +
Sbjct: 193 ETGFIPALKDNPHIW----VLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNA 248
Query: 336 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395
+ V RE ++ +L + + P A YL +
Sbjct: 249 LAALAGEV-----ALQDSAWQQATWHWLREEGARFYQALCQLPLLTV-YPGRANYLLLRC 302
Query: 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--DDTCIRISYA--ASLTTLQ 451
L R LL + ++ + + D R++ A L
Sbjct: 303 E-------------REDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIRSAAQNERLL 348
Query: 452 AAVERI 457
AA+ +
Sbjct: 349 AALRNV 354
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 92.5 bits (228), Expect = 2e-21
Identities = 65/383 (16%), Positives = 129/383 (33%), Gaps = 51/383 (13%)
Query: 77 SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLEL 136
+ I +A LA E F P + + + R ++ EL
Sbjct: 2 NPLDLIAKRAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEEL 61
Query: 137 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 196
I L + + + + V NGA + + + D + P + Y A+
Sbjct: 62 IEKILSYLDTDF---LSKNNVSVGNGAD----EIIYVMMLMFDRSVFFPPTYSCYRIFAK 114
Query: 197 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256
A + +P + ++ + +P+NPTG V+ + ++ I +
Sbjct: 115 AVGAKFLEVPLTKDLRIPEVNV-------GEGDVVFIPNPNNPTGHVFEREEIERILK-- 165
Query: 257 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 316
+ L + YE + +E + FSKAF++ R+GY+
Sbjct: 166 --TGAFVALDEAYYEFHGESYVDF------LKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217
Query: 317 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376
+ F+ A N+++ F S E+ + K E R+ + + E
Sbjct: 218 EKFIDAYNRVRLPFNVSYVSQMFAKVA------LDHREIFEERTKFIVEERERMKSALRE 271
Query: 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDD 436
+ G ++++ +G F F + E E L +L K VA+ F +
Sbjct: 272 M-GYRITDSRGNFVFV-------------FMEKEEKERLLEHLRTK-NVAVRS---FRE- 312
Query: 437 TCIRISYAASLTTLQAAVERIKK 459
+RI+ + ++
Sbjct: 313 -GVRITIGKREEN-DMILRELEV 333
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 87.1 bits (214), Expect = 2e-19
Identities = 60/391 (15%), Positives = 114/391 (29%), Gaps = 52/391 (13%)
Query: 79 TVAITDQA-----------TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY 127
TV ITD A +A G + L A E + + +N RY
Sbjct: 1 TVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLN-------RY 53
Query: 128 TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187
P + P+Q+LVS GA + I + A C PG + I+ P
Sbjct: 54 -PECQPKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPP 106
Query: 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247
++ + L + ++ N
Sbjct: 107 TYGMYSVSAETIGVECRTVPTLDNWQLDLQGI---SDKLDGVKVVYVCSPNNPTGQLINP 163
Query: 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307
+ + ++V + E A A + + SKAFA+ G
Sbjct: 164 QDFRTLLELTRGKAIVVADEAYIEFCPQAS-----LAGWLAEYPHLAILRTLSKAFALAG 218
Query: 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367
R G+ + + K+ + + A + G + + V R
Sbjct: 219 LRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQ----GIVAMRERVAQIIAER 274
Query: 368 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL 427
++L+ + E+ V+ Y+ F + S ++ + L D+ +
Sbjct: 275 EYLIAALKEIPCVEQVFDSETNYILARF--------------KASSAVFKSLWDQGIILR 320
Query: 428 VPGDAFGDDTCIRISYAASLTTLQAAVERIK 458
C+RI+ Q ++ ++
Sbjct: 321 DQNKQPSLSGCLRITVGTR-EESQRVIDALR 350
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 47/368 (12%), Positives = 106/368 (28%), Gaps = 38/368 (10%)
Query: 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEV 181
+ ++ ++ +++ + + G+ +V S+ L + +
Sbjct: 84 PKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYI 143
Query: 182 IIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKL----TEKSRLLILCSP 236
I P S + A PV++ + + D K +E+K+ E L +
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
Query: 237 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL-- 294
L+E+A I A + +I + A +S +
Sbjct: 204 CFAPRVPDR---LEELAVICANY--------DIPHVVNNAYGLQSSKCMHLIQQGARVGR 252
Query: 295 ---TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--G 349
V K F + + F+ +K+ S + S+ + +LG
Sbjct: 253 IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGY 312
Query: 350 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409
+ +M + L ++ E P ++ G +
Sbjct: 313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSM 372
Query: 410 ENSESL-CRYLLDKAQVALVPGDAFGD---------DTCIRISYAASLTT--LQAAVERI 457
+ + + V V G F + + A + + ++R+
Sbjct: 373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRL 432
Query: 458 KKGLLTLR 465
K L +R
Sbjct: 433 DKCLNIVR 440
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 7e-06
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 154 PDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPV-ILPTR 208
P +I+ ++GA +S A+ G +I + + R + +
Sbjct: 65 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLA 124
Query: 209 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 256
N ++D K LE+ + + + L+ + +N G V + E+ R
Sbjct: 125 PQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR 172
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.97 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.95 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.95 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.94 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.93 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.93 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.93 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.92 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.91 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.9 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.88 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.86 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.86 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.82 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.82 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.81 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.81 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.81 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.81 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.81 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.8 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.8 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.79 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.79 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.78 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.78 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.78 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.77 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.77 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.77 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.77 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.77 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.76 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.76 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.76 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.75 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.74 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.73 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.73 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.73 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.73 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.72 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.72 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.71 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.7 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.68 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.65 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.65 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.64 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.64 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.63 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.63 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.62 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.53 | |
| d1v4ra1 | 100 | Transcriptional repressor TraR, N-terminal domain | 99.49 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 99.49 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 99.47 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.45 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.34 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 99.3 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.29 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.2 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.41 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 94.01 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 90.28 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 89.3 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 88.6 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 87.34 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 86.43 | |
| d2b0la1 | 91 | GTP-sensing transcriptional pleiotropic repressor | 85.06 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 84.33 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 83.48 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 82.13 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 81.13 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 80.98 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 80.79 | |
| d3e5ua1 | 80 | Chlorophenol reduction protein CprK {Desulfitobact | 80.54 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.8e-66 Score=512.87 Aligned_cols=386 Identities=45% Similarity=0.792 Sum_probs=358.3
Q ss_pred cCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHH
Q 012124 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l 144 (470)
|.++.++..+++++...+.+.++++...|+++|+|+.|+|++++|+.+++++.+++.++.++|+++.|.++||+++++++
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CchhhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Confidence 35677788888888878888888898899999999999999999999999999999888899999999999999999999
Q ss_pred HHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc
Q 012124 145 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 224 (470)
Q Consensus 145 ~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 224 (470)
.+.+|+.+++++|++|+|+++++..+++++++|||+|++++|+|++|...++..|++++.++.+.+++|.+|++++++++
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC-CCCceEEEeccCccc
Q 012124 225 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAF 303 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~S~sK~~ 303 (470)
+++++++++++||||||.+++.+++++|+++|+++ |++||+||+|.++.|++....++....+ ..+++|+++||||.|
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~-~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~ 239 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY 239 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred CCCCeEEEECCCCCCCCcccchhhhhhhhcccccC-CeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence 99999999999999999999999999999999999 9999999999999998877777766543 236899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
++||+|+||+++++++++.+.+.......+++.+.|.++...+.. .++++++.++.|+++++.+.+.|++++|+.+.
T Consensus 240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 316 (388)
T d1j32a_ 240 AMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECP 316 (388)
T ss_dssp TCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC
T ss_pred hcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec
Confidence 999999999999999999999888888888999999999998886 47899999999999999999999998899999
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
.|++|||+|+++++.. .++.+++++|++++||.+.||..|+.++++|++|+.++++|+++++||+++++.
T Consensus 317 ~p~gg~~l~~~l~~~~----------~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 317 KPDGAFYMFPSIAKTG----------RSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CCCBTTEECCBCGGGT----------CCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998642 277889999988889999999999999999999999999999999999999987
Q ss_pred h
Q 012124 464 L 464 (470)
Q Consensus 464 ~ 464 (470)
+
T Consensus 387 l 387 (388)
T d1j32a_ 387 I 387 (388)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.4e-64 Score=498.65 Aligned_cols=379 Identities=42% Similarity=0.702 Sum_probs=345.5
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++..++++++.++.+.++++...|+++|+|+.|+|++++|+.+++++.+++.++.++|+++.|.++||+++++++.+
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~ 83 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR 83 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhh
Confidence 67788899999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+.+++++|++|+|+++++..++.+++++||.|++++|+|++|...++.+|.+++.+++++++++.+|++.+++++++
T Consensus 84 ~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 163 (382)
T d1b5pa_ 84 ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163 (382)
T ss_dssp TTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred hcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++++++++||||||.+++.+++++|+++|++| |++||+||+|+++.|++....+.. .. .+++|+++||||.|++|
T Consensus 164 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~-~~--~~~~i~~~s~SK~~~~~ 239 (382)
T d1b5pa_ 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGR-VA--PEHTLTVNGAAKAFAMT 239 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCGGG-TC--TTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHc-CeEEEEEccccceecCCCCCCHHH-cC--CCCEEEEecchhhccCc
Confidence 999999999999999999999999999999999 999999999999999876544433 32 47999999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||+++++++++.+.+.+.....+++.+.|.++...+..+.....+++..++.|+++++.+.+.+.+. |+.+..|+
T Consensus 240 GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~ 318 (382)
T d1b5pa_ 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPS 318 (382)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCS
T ss_pred HhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCC
Confidence 99999999999999999998888888899999988888876533235678888999999999999999887 88899999
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
+|||+|+++++.. .+...+.+.|.++ ||.+.||..|+.++++||+++.++++|+++++||++++
T Consensus 319 gg~~~~~~~~~~~----------~~~~~~~~~l~e~-gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 319 GAFYVLMDTSPIA----------PDEVRAAERLLEA-GVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp BTTEEEEECTTTC----------SSHHHHHHHHHHT-TEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred ceEEEeEeCCCCC----------CCHHHHHHHHHHC-CEEEEeCcccCCCCeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 9999999996531 1677787777654 99999999999999999999989999999999998753
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.3e-63 Score=487.03 Aligned_cols=382 Identities=42% Similarity=0.656 Sum_probs=346.2
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
++.++..++++.++++.+.+. ..+++|+|+.|+|++++|+.+++++.+++.++.++|+++.|.++||++|++|+.+
T Consensus 2 ~s~~~~~~~~s~ir~~~~~~~----~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~ 77 (388)
T d1gdea_ 2 LSDRLELVSASEIRKLFDIAA----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKK 77 (388)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH----HCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhhCCccHHHHHHHHHh----CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHh
Confidence 355677778888777765433 4568999999999999999999999999998889999999999999999999987
Q ss_pred HcCCC-CCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 147 ENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 147 ~~g~~-~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
..+.. ..+++|++|+|+++++.+++.++++|||+|++++|+|+.|...++..|++++.+|++.+++|++|+++|++.++
T Consensus 78 ~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (388)
T d1gdea_ 78 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 157 (388)
T ss_dssp HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred hccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc
Confidence 66654 45678999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccc
Q 012124 226 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 305 (470)
Q Consensus 226 ~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 305 (470)
++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.+++....++.+++...+++|+++||||.|++
T Consensus 158 ~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~-~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 236 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccC
Confidence 9999999999999999999999999999999999 999999999999999887778888887767899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 306 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 306 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
||+|+||+++++++++.+.........+++.+.|.++..++.++.. .+++...++.|+++++.+.+.|... ++.+..|
T Consensus 237 ~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p 314 (388)
T d1gdea_ 237 TGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKP 314 (388)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred ccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhc-cccccCC
Confidence 9999999999999999999999889999999999999999987544 5678888899999999999999887 7888889
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHh
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~ 463 (470)
++|+|+|+++++.. .++.+++++|++++||.+.||..|+. ++++|++++.++++|++++++|++++++
T Consensus 315 ~gg~fl~~~l~~~~----------~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 315 KGAFYIFPRIRDTG----------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp CBTTEECCBCGGGT----------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 99999999997531 27889999998888999999999975 6899999998889999999999999998
Q ss_pred hC
Q 012124 464 LR 465 (470)
Q Consensus 464 ~~ 465 (470)
+|
T Consensus 385 ~k 386 (388)
T d1gdea_ 385 RK 386 (388)
T ss_dssp TT
T ss_pred cC
Confidence 76
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.7e-61 Score=475.85 Aligned_cols=382 Identities=30% Similarity=0.502 Sum_probs=331.0
Q ss_pred CccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHH
Q 012124 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~---~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~ 142 (470)
..+.++..++ +.++++...++++.++|+++|+|+.|+| ++++|+.+++++.+++.++.++|+++.|.++||++|++
T Consensus 3 ~~s~r~~~~~-~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~ 81 (395)
T d1xi9a_ 3 RASKRALSVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE 81 (395)
T ss_dssp CCCHHHHTCC-C-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHH
T ss_pred cchhccccCc-HHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Confidence 3455666664 5677787888888899999999999998 78889999999999998888889999999999999999
Q ss_pred HHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhh
Q 012124 143 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 222 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 222 (470)
++++.+|+.+++++|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.++...+++|.+|++.+++
T Consensus 82 ~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~ 161 (395)
T d1xi9a_ 82 REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRK 161 (395)
T ss_dssp HHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHH
T ss_pred hhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred hccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 223 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 223 ~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
.+.++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++.. .+...+.. .+++|+++||||.
T Consensus 162 ~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~-~~~~~~~~-~~~vi~~~S~SK~ 238 (395)
T d1xi9a_ 162 KITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEGEH-ISPGSLTK-DVPVIVMNGLSKV 238 (395)
T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSSCC-CCHHHHCS-SSCEEEEEESTTT
T ss_pred hhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhc-CeeEEeccccccccccccc-cchhhcCC-CCCEEEEeCcchh
Confidence 9999999999999999999999999999999999999 9999999999999887543 33444444 5789999999999
Q ss_pred cccccceeeEEEcC--HHHHHHHHH---HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 012124 303 FAMTGWRLGYIAGP--KHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 377 (470)
Q Consensus 303 ~~~~G~r~G~~~~~--~~~~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 377 (470)
+++||+|+||++++ ...+..+.+ .......+++.+.|.++..++.. .++|+++.++.|+++++.+.+.|+++
T Consensus 239 ~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~ 315 (395)
T d1xi9a_ 239 YFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRLNEI 315 (395)
T ss_dssp TCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998753 333333322 22345667899999999999986 47899999999999999999999998
Q ss_pred CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHH
Q 012124 378 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVE 455 (470)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~ 455 (470)
+++.+..|++|+|+|++++... ..++.+++.+|++++||.+.||..|+. ++|+||+++.++++++++++
T Consensus 316 ~~~~~~~p~gg~~~~~~l~~~~---------~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~ 386 (395)
T d1xi9a_ 316 PGISTTKPQGAFYIFPKIEVGP---------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMD 386 (395)
T ss_dssp TTEECCCCCBSSEECCEECSCS---------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHH
T ss_pred CCceecCCCeeEEEeEECCCCC---------CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 7788889999999999997531 126788899889888999999999985 67999999888999999999
Q ss_pred HHHHHHHh
Q 012124 456 RIKKGLLT 463 (470)
Q Consensus 456 ~l~~~l~~ 463 (470)
||++++++
T Consensus 387 rl~~~l~e 394 (395)
T d1xi9a_ 387 RFEKFMKE 394 (395)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.3e-60 Score=463.24 Aligned_cols=373 Identities=38% Similarity=0.662 Sum_probs=339.4
Q ss_pred cccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHH
Q 012124 68 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 147 (470)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~ 147 (470)
++++.+++.+.+..+.+.+++..+.|+++|+|+.|+|++++|+.+++++.+++.++.++|+++.|.++||+++++++.+.
T Consensus 2 ~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~ 81 (375)
T d1o4sa_ 2 SRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGER 81 (375)
T ss_dssp CHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhc
Confidence 45677777788888888999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 148 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 148 ~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
+|...++++|++|+|+++++..++.+|+++||+|++++|+|+.+...+...|...+.++.+.++++.+|.+.++....++
T Consensus 82 ~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (375)
T d1o4sa_ 82 YKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 161 (375)
T ss_dssp HTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred cccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccccccc
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 307 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 307 (470)
++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.++......+. ..+..+++|+++||||.+++||
T Consensus 162 ~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~l~G 239 (375)
T d1o4sa_ 162 TKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTDEFTSILD-VSEGFDRIVYINGFSKSHSMTG 239 (375)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSSCCCCHHH-HCSSSTTEEEEEESTTTTTCGG
T ss_pred ccEEEEeCCCCCccCCCCHHHHHHHHHhHHHc-CCceehHhhhcccccccccccccc-ccCCCCCEEEEeechhhccCCc
Confidence 99999999999999999999999999999999 999999999999888765444433 3444789999999999999999
Q ss_pred ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc
Q 012124 308 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 387 (470)
Q Consensus 308 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 387 (470)
+|+||++++++.++.+.........+.+...+......++. +....++.++++++.+.+.|++. |+++..|++
T Consensus 240 ~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~g 312 (375)
T d1o4sa_ 240 WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEV------DNSYMVQTFKERKNFVVERLKKM-GVKFVEPEG 312 (375)
T ss_dssp GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSB
T ss_pred cccccccccccchhhhhhhhccccccccccchhhhhhhccc------chhhhHHHHHHHHHHHHHHHHhc-CceEecCCc
Confidence 99999999999999999888888888888888777666543 34556778899999999999988 899999999
Q ss_pred eEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHH
Q 012124 388 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 388 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~ 462 (470)
|||+|++++. ++.+++.+|++++||.+.||..|+.++||||+++.++++|++++++|+++++
T Consensus 313 g~f~~~~~~~-------------~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 313 AFYLFFKVRG-------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp SSEEEEECSS-------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCC-------------CHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 9999999975 6778888888888999999999999999999999899999999999999986
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.3e-58 Score=461.29 Aligned_cols=391 Identities=25% Similarity=0.449 Sum_probs=341.1
Q ss_pred cCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHH
Q 012124 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia 141 (470)
+.++.++.+++++...++.+.... .++|+|+.|+|++++|+.+++++.+++.+. .++|+++.|.++||++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA 76 (418)
T d2r5ea1 2 FDLPKRYQGSTKSVWVEYIQLAAQ-----YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALS 76 (418)
T ss_dssp CCCCGGGTTCCCCHHHHHHHHHHH-----HCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHH
T ss_pred CchhhhhcCCCCCHHHHHHHHhcC-----CCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHH
Confidence 346778888999888887655443 267999999999999999999999998753 467999999999999999
Q ss_pred HHHHHHcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCC--------C
Q 012124 142 HKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------N 212 (470)
Q Consensus 142 ~~l~~~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~ 212 (470)
+++.+.+|..+++ ++|++|+|+++++.++++++++|||.|++++|+|+.+...+...|.+++.+++++++ .
T Consensus 77 ~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 156 (418)
T d2r5ea1 77 KLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSAD 156 (418)
T ss_dssp HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGG
T ss_pred HHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhh
Confidence 9999999999885 899999999999999999999999999999999999999999999999999997653 3
Q ss_pred CccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCc
Q 012124 213 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 292 (470)
Q Consensus 213 ~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (470)
+.++++.+.+....+++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.+++....++..+....++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 157 WVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp EECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred hhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcC-CeeeecccchhhhccCCCccccccccccccce
Confidence 56788889888888999999999999999999999999999999999 99999999999999988777777777776789
Q ss_pred eEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHH
Q 012124 293 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGEVVSKMVKAFRERRD 368 (470)
Q Consensus 293 ~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~ 368 (470)
++++.||||.+++||+|+||+++++++++.+.+.......+++.+.|.+++..+..+. ..++|++++++.|+.+++
T Consensus 236 ~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 315 (418)
T d2r5ea1 236 TITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRD 315 (418)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred eeeeecCCccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998888888899999988887765321 136789999999999999
Q ss_pred HHHHHhccCCCCeecCCCceEEEeeeccCccCCcc-cCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEE
Q 012124 369 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA-EGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIR 440 (470)
Q Consensus 369 ~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iR 440 (470)
.+.+.|+++ |+.+..|++|||+|++++....... .......++.+++++|++++||.+.||..|+. +++||
T Consensus 316 ~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iR 394 (418)
T d2r5ea1 316 YMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVR 394 (418)
T ss_dssp HHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEE
T ss_pred hHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEE
Confidence 999999998 9999999999999999875321100 00111226788999999888999999999975 36899
Q ss_pred EEeecCHHHHHHHHHHHHHHHH
Q 012124 441 ISYAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 441 ls~~~~~~~i~~~l~~l~~~l~ 462 (470)
|||+.++++|++++++|++++.
T Consensus 395 is~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 395 YCFFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp EECCSCHHHHHHHHHHHHHHHT
T ss_pred EEecCCHHHHHHHHHHHHHHHc
Confidence 9998899999999999999874
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.3e-57 Score=443.27 Aligned_cols=370 Identities=28% Similarity=0.487 Sum_probs=329.1
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcC
Q 012124 70 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 149 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g 149 (470)
+...+....+.++.+.+ .++++|+|+.|.|++++|+.+++++.+++.++.++|++..|.++||++|++|+++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~a-----~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g 81 (382)
T d1u08a_ 7 KLPQLGTTIFTQMSALA-----QQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYG 81 (382)
T ss_dssp SCCCCCCCHHHHHHHHH-----HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHS
T ss_pred hCCCCCCcHHHHHHHHh-----ccCCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 34445555455554443 3357899999999999999999999999998889999999999999999999999999
Q ss_pred CCCCCC-cEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCc
Q 012124 150 LSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS 228 (470)
Q Consensus 150 ~~~~~~-~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 228 (470)
+.++++ +|++|+|+++++.+++++++++||.|++++|+|+.+...+...|...+.++.+. +++.+|++++++.+++++
T Consensus 82 ~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~ 160 (382)
T d1u08a_ 82 YQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLSERT 160 (382)
T ss_dssp CCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCCTTE
T ss_pred CCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceeccccc-ccccCCHHHHhhhhccCc
Confidence 988876 599999999999999999999999999999999999999999999998888764 567789999999999999
Q ss_pred eEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccc
Q 012124 229 RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 308 (470)
Q Consensus 229 ~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ 308 (470)
+++++++||||||.+++.+++++|+++|.++ +++++.|++|..+.+.+.........+...+++|++.|+||.+++||+
T Consensus 161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~-~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~ 239 (382)
T d1u08a_ 161 RLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW 239 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG
T ss_pred cEEEECCCCcccccccccccchhhhhhhccc-cceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcc
Confidence 9999999999999999999999999999999 999999999999888765555555444446799999999999999999
Q ss_pred eeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCce
Q 012124 309 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 388 (470)
Q Consensus 309 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g 388 (470)
|+||+++++++++.+.+.......+++.+.|.++..++.. .++|++++++.|+++++.+.+.+... |+.+..|++|
T Consensus 240 RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg 315 (382)
T d1u08a_ 240 KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA---EPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGT 315 (382)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH---CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBS
T ss_pred cchhhhccchhHHHHHhhhccccccccccccccccccccc---chHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCce
Confidence 9999999999999999999888899999999999999987 47899999999999999999998776 8999999999
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
||+|+++|... ..++.+++++|++++||.+.||+.|+. .++|||||+.++++++++++||++
T Consensus 316 ~~~~~~~~~~~---------~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 316 YFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp SEEEEECTTTC---------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEEecCCCC---------CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 99999998631 127889999999888999999999974 358999999899999999999875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-57 Score=454.36 Aligned_cols=387 Identities=28% Similarity=0.508 Sum_probs=335.3
Q ss_pred ccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCcCcHHHHHHHHHHHHH
Q 012124 69 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~--~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
.++..+.+++..+..+. ..++++|+|+.|+|++++|+.+++++.+++.++ .++|++..|.++||++|++++++
T Consensus 5 ~r~~~~~~~~~~~~~~~-----~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~ 79 (418)
T d1w7la_ 5 RRLDGIDYNPWVEFVKL-----ASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGE 79 (418)
T ss_dssp GGGTTCCCCTHHHHHHH-----HHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHH-----hCCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHH
Confidence 34556666666555433 346689999999999999999999999998764 46799999999999999999999
Q ss_pred HcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC----------CCCCcc
Q 012124 147 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----------SENFLL 215 (470)
Q Consensus 147 ~~g~~~~~-~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----------~~~~~~ 215 (470)
.+|.++++ ++|++|+|++++|.+++++++++||.|++++|+|+.|...+...|++++.++..+ +.++.+
T Consensus 80 ~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 159 (418)
T d1w7la_ 80 LLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQL 159 (418)
T ss_dssp HHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEEC
T ss_pred HhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCccc
Confidence 99998885 7899999999999999999999999999999999999999999999999998764 235667
Q ss_pred CHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEE
Q 012124 216 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 295 (470)
Q Consensus 216 d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 295 (470)
|.+++....+++++++++++||||||.++|.+++++|+++|+++ +++||+||+|.++.|++....++.+++...+++++
T Consensus 160 d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~ 238 (418)
T d1w7la_ 160 DPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERTLT 238 (418)
T ss_dssp CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEE
T ss_pred chhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhc-CCCchhhhhhHHhhcCCCCCCCHHHccccccccce
Confidence 88888888888999999999999999999999999999999999 99999999999999998877888888776789999
Q ss_pred EeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHHHH
Q 012124 296 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGEVVSKMVKAFRERRDFLV 371 (470)
Q Consensus 296 i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~ 371 (470)
+.||||.+++||+|+||+++++++++.+.+.......+++.+.|.++..++..+. ...+++...++.|+++++.+.
T Consensus 239 ~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 318 (418)
T d1w7la_ 239 IGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI 318 (418)
T ss_dssp EEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred ecccCccccCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Confidence 9999999999999999999999999999999998899999999999988886421 124678899999999999999
Q ss_pred HHhccCCCCeecCCCceEEEeeeccCccCCccc--CCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------CCcEEEE
Q 012124 372 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE--GFGKIENSESLCRYLLDKAQVALVPGDAFGD-------DTCIRIS 442 (470)
Q Consensus 372 ~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------~~~iRls 442 (470)
+.|+++ |+++..|++|||+|+++++....... ...+..++.+++++|++++||.+.||+.|+. ++|||||
T Consensus 319 ~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis 397 (418)
T d1w7la_ 319 RSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC 397 (418)
T ss_dssp HHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE
T ss_pred hhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEE
Confidence 999988 89999999999999998753211110 1111124678999999999999999999973 4799999
Q ss_pred eecCHHHHHHHHHHHHHHHH
Q 012124 443 YAASLTTLQAAVERIKKGLL 462 (470)
Q Consensus 443 ~~~~~~~i~~~l~~l~~~l~ 462 (470)
|+.+++++++++++|+++..
T Consensus 398 ~~~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 398 FVKDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp CCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCHHHHHHHHHHHHHHhc
Confidence 98899999999999988753
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=6.2e-57 Score=448.47 Aligned_cols=364 Identities=23% Similarity=0.396 Sum_probs=309.9
Q ss_pred cCCCeEEccCCCCCCCC----hHHHHHHHHHHHHc-CCCCCCCCcCcHHHHHHHHHHHHHHcC------CCCCCCcEEEe
Q 012124 92 AGVSVIRLAAGEPDFDT----PVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENG------LSYTPDQILVS 160 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~----~~~~~~a~~~~~~~-~~~~y~~~~g~~~lr~~ia~~l~~~~g------~~~~~~~i~it 160 (470)
.++++|+|+.|+|++++ ++.+++++.+.+.. ..++|++..|.++||++|++|++++++ ..+++++|++|
T Consensus 28 ~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it 107 (412)
T d1bw0a_ 28 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 107 (412)
T ss_dssp SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEe
Confidence 34579999999988654 47788888887765 457899999999999999999998764 45788999999
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 161 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+|+++++..+++++++|||+|++++|+|+.|...++..|++++.+|++.+++|.++++.+++.++++++++++++|||||
T Consensus 108 ~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPt 187 (412)
T d1bw0a_ 108 SGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPC 187 (412)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred cccccchhhhhhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC---CCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---GMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|.+++.+++++|+++|++| +++||+||+|.++.|++....+..... ....++++++||||.++++|+|+||+++++
T Consensus 188 G~~~~~~~~~~i~~~~~~~-~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~ 266 (412)
T d1bw0a_ 188 GSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVD 266 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEEC
T ss_pred cccchhhhccccccccccC-CeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccc
Confidence 9999999999999999999 999999999999999875544433221 124678999999999999999999999864
Q ss_pred ------HHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEE
Q 012124 318 ------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 391 (470)
Q Consensus 318 ------~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~ 391 (470)
.++......... ..+++.+.|.++...+... .++++.++++.|+++++.+.+.|.+.+|+.+..|++|||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l 343 (412)
T d1bw0a_ 267 PHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYL 343 (412)
T ss_dssp TTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEE
T ss_pred hhhcchhhhhhhcccccc-ccCCchhhhhhcccccccc--cccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEE
Confidence 344444444433 3345666666665555442 3789999999999999999999988779999999999999
Q ss_pred eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 392 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
|++++... ..+..++.+++++|++++||.+.||+.|+.++++||||+.++++++++++||+++++++.
T Consensus 344 ~~~~~~~~------~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 344 MSRIDLEK------YRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp EEEECGGG------BSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred EEeCChhh------cCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 99886421 112236889999999888999999999999999999999999999999999999998764
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-56 Score=443.10 Aligned_cols=378 Identities=25% Similarity=0.434 Sum_probs=330.1
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 146 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~ 146 (470)
+++++.+.++++++++...+.+..+.|.++|+|+.|+|++++|+.+.+++.++. .+.++|+++.|.++||+++++|+.+
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~ 79 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENK-PEVVYYSHSAGIWELREAFASYYKR 79 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CChhhhcCCCCHHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 356778888899988888888888899999999999999999999999887753 3578899999999999999999999
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+|+.+++++|++|+|+++++..++.+++++||.|++++|+|+.+...++..|+.++.++.+.++ +..+.+.+...+.+
T Consensus 80 ~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 158 (389)
T d2gb3a1 80 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEE-GFAIPQNLESFINE 158 (389)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGG-TSCCCTTGGGGCCT
T ss_pred hcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCcccccccccccc-ccchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999987544 34566778888888
Q ss_pred CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccc
Q 012124 227 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 227 ~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~ 306 (470)
+++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++...... ... .++++++.|+||.+++|
T Consensus 159 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~-~~~--~~~~~v~~s~sK~~~~~ 234 (389)
T d2gb3a1 159 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGEFASAL-SIE--SDKVVVIDSVSKKFSAC 234 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCGG-GSC--CTTEEEEEESTTTTTCG
T ss_pred CccEEEeCCCCccccccchHHHHHHHHhhcccC-CEEEEEecccccccccccccccc-ccc--cccccccccccccccCc
Confidence 999999999999999999999999999999999 99999999999999876543332 222 47889999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 307 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 307 G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
|+|+||++++.+.+............+++.+.|.++..++.. .+.+++++++.|+++++.+.+.|+++++..+..|.
T Consensus 235 GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 311 (389)
T d2gb3a1 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS 311 (389)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS
T ss_pred ccceeeeeccchhHHHHHhhhhhccccccccccccccccccc---cchhcccccccccccchhhhhhhhhhccccccCCC
Confidence 999999999776555544444456667888888888888875 47899999999999999999999998556778899
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHc-----CCEEEECCCCCCC-----CCcEEEEeecCHHHHHHHHHH
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVALVPGDAFGD-----DTCIRISYAASLTTLQAAVER 456 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~gI~v~pg~~f~~-----~~~iRls~~~~~~~i~~~l~~ 456 (470)
+|+|+|+++|.. ++.+++++|+++ .||.+.||+.|+. ++++||+++.+++++++++++
T Consensus 312 ~g~~~~~~lp~~------------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~ 379 (389)
T d2gb3a1 312 GAFYITAELPVE------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDV 379 (389)
T ss_dssp BSSEEEEECSSS------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCC------------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHH
Confidence 999999999865 788999988765 4789999998864 468999998899999999999
Q ss_pred HHHHHHhhC
Q 012124 457 IKKGLLTLR 465 (470)
Q Consensus 457 l~~~l~~~~ 465 (470)
|+++++++.
T Consensus 380 L~~~lk~f~ 388 (389)
T d2gb3a1 380 LMEGLKMFC 388 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998763
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=2.6e-56 Score=441.12 Aligned_cols=363 Identities=23% Similarity=0.336 Sum_probs=311.3
Q ss_pred HHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 88 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 88 ~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.....|+++|+|+.|+|++++|+.+++++.+++.++.++|+ .|.++||++|++|+++++|+++++++|++|+|+++++
T Consensus 25 ~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al 102 (394)
T d1c7na_ 25 QNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAV 102 (394)
T ss_dssp HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred HhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhh
Confidence 34456789999999999999999999999999988888884 4789999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCCCccCHHhHhhhcc-CCceEEEEcCCCCCcccCCC
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG~~~s 245 (470)
.++++++++|||.|++++|.|+++...+...|.+.+.++... ++.+.+|.+.++..+. ++++++++++||||||.++|
T Consensus 103 ~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s 182 (394)
T d1c7na_ 103 FNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWK 182 (394)
T ss_dssp HHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCC
T ss_pred hhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceecc
Confidence 999999999999999999999999999999999999998764 3456688888888774 57999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccC-CCCCceEEEeccCcccccccceeeEEEcCH-HHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC 323 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~l 323 (470)
.+++++|+++|++| +++||+||+|.++.|++....+..... ...++++++.||||.++++|+|+||+++++ .+.+.+
T Consensus 183 ~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~ 261 (394)
T d1c7na_ 183 KDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERF 261 (394)
T ss_dssp HHHHHHHHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHH
T ss_pred HHHhhhhhcccccc-ceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhh
Confidence 99999999999999 999999999999999876555544332 224789999999999999999999998765 566677
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCc
Q 012124 324 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSE 402 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~ 402 (470)
.........+++...+.+++..... . .+++.++.++.++++++.+.+.++. .+++.+..|+++||+|+++++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~a~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~--- 336 (394)
T d1c7na_ 262 TKSRDATSGMPFTTLGYKACEICYK-E-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK--- 336 (394)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHH-H-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC---
T ss_pred hhhhhhccccccccccchhhhhhhc-c-hhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCC---
Confidence 7766665555555544444433322 1 3788999999999999999998876 56888889999999999998631
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.++.++++.|++++||.+.||+.|+. ++++|||++.++++|+++++||+++++++|
T Consensus 337 -------~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 337 -------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp -------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred -------CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 27889999999998999999999985 579999999889999999999999999875
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-55 Score=425.36 Aligned_cols=353 Identities=18% Similarity=0.311 Sum_probs=303.1
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
+|+|+.|+||+++|+.+++++.+++.++.++|++..| +++|++|++++.+++|.++++++|++|+|+++++..++.+++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~ 79 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS 79 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc
Confidence 4899999999999999999999999888889988888 789999999999999999999999999999999999999999
Q ss_pred CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCC-CCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 176 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+|||+|++++|+|+++..+++..|.+++.++.+.+ +++.+|++.+++.+ +++++++++++||||||.++|.+++++|+
T Consensus 80 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~ 159 (361)
T d1d2fa_ 80 ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA 159 (361)
T ss_dssp CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred ccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhh
Confidence 99999999999999999999999999999998753 55678999999988 45899999999999999999999999999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH-HHHHH-HHHHhhhcc
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAA-CNKIQSQFT 331 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~-~~~~~-l~~~~~~~~ 331 (470)
++|+++ +++||+||+|.++.|++....++...+ .++++++.|+||.++++|+|+||++.+. ..... +........
T Consensus 160 ~~~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~ 236 (361)
T d1d2fa_ 160 DLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVA--RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDG 236 (361)
T ss_dssp HHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTC--CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSC
T ss_pred hhhhhh-heeeeeccccccccccccccccccccc--ccccccccccccccccccccceeeecchhHHHHHHhhhcccccc
Confidence 999999 999999999999999877666666665 4789999999999999999999987653 33333 333333333
Q ss_pred C-CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCCeecCCCceEEEeeeccCccCCcccCCCCC
Q 012124 332 S-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 409 (470)
Q Consensus 332 ~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 409 (470)
. +++...+.++...+.. ...+.++.+..++++++.+.+.+.+ .+++.+..|++|||+|++++...
T Consensus 237 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~---------- 303 (361)
T d1d2fa_ 237 LSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLN---------- 303 (361)
T ss_dssp CCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGC----------
T ss_pred cccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCC----------
Confidence 3 2344444444445554 4778899999999999998888765 56788889999999999986421
Q ss_pred CCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHHHhhC
Q 012124 410 ENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 410 ~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l~~~~ 465 (470)
.++.+++++|++++||.+.||+.|+. ++++|+|++.+++++++++++|++++++++
T Consensus 304 ~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 304 IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 28899999999999999999999985 468999998889999999999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.9e-55 Score=434.74 Aligned_cols=376 Identities=21% Similarity=0.335 Sum_probs=318.7
Q ss_pred ccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCC--hHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHHH
Q 012124 67 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG---FTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~--~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~ia 141 (470)
++.....++++.++++.+. ..++++|+|+.|.|+..+ ++.+.+++.+++... ..+|+++.|.++||++|+
T Consensus 16 ~s~~~~~~~~s~ir~~~~~-----~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia 90 (420)
T d1vp4a_ 16 ISKIGQNMKSSIIREILKF-----AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQIL 90 (420)
T ss_dssp CCHHHHTCCCCCHHHHTTT-----TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHH
T ss_pred HhHHHHhCCCcHHHHHHHH-----hCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHH
Confidence 4445556666666655332 357789999999998664 456777777777643 478999999999999999
Q ss_pred HHHHHHcCCC-CCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 142 HKLKEENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 142 ~~l~~~~g~~-~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
+++.+.+|+. +++++|++|+|+++++.+++.++++|||.|++++|+|+.+...++..|++++.+|.+++ ++|++.+
T Consensus 91 ~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~---~~~~~~l 167 (420)
T d1vp4a_ 91 KLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMDLNVL 167 (420)
T ss_dssp HHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EECHHHH
T ss_pred HHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhccccccccc---ccccchh
Confidence 9999999986 78999999999999999999999999999999999999999999999999999998654 3788876
Q ss_pred hhhcc--------CCce-EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 221 ESKLT--------EKSR-LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 221 ~~~l~--------~~~~-~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
+..+. .+++ ++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+....+. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~~~~~~~~-~~ 245 (420)
T d1vp4a_ 168 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKIGG-PE 245 (420)
T ss_dssp HHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCCCHHHHHC-TT
T ss_pred hhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcc-cccccccchhhhccccCccccccccccc-cc
Confidence 55431 2334 445789999999999999999999999999 9999999999999998766666555544 58
Q ss_pred ceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 371 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 371 (470)
++++++|+||.++ +|+|+||+++++++++++.+.......+++.+.|.+++.++..+.. .+++++.++.|+++++.+.
T Consensus 246 ~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 323 (420)
T d1vp4a_ 246 RVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVML 323 (420)
T ss_dssp TEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHH
T ss_pred ceeEEeccccccc-cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccch
Confidence 8999999999985 9999999999999999999999888899999999999999988665 7888888899999988888
Q ss_pred HHhcc----CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEe
Q 012124 372 KSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISY 443 (470)
Q Consensus 372 ~~L~~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~ 443 (470)
+.|.+ ++|+++..|++|||+|+++|+.. ++.++++.|.+ .||.+.||+.|+. .+++||||
T Consensus 324 ~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~-----------d~~~~~~~l~~-~gV~v~PG~~F~~~~~~~~~iRls~ 391 (420)
T d1vp4a_ 324 NALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF-----------DTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRLSF 391 (420)
T ss_dssp HHHHHHSTTSTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEEEC
T ss_pred hhhhhhhccCCCcEEecCCceEEEEEECCCCC-----------CHHHHHHHHHH-CCeEEEechhhCCCCCCCCEEEEEe
Confidence 87765 46899999999999999998754 66778876655 5999999999974 46999999
Q ss_pred ec-CHHHHHHHHHHHHHHHHhhCC
Q 012124 444 AA-SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 444 ~~-~~~~i~~~l~~l~~~l~~~~~ 466 (470)
+. +++++++++++|++++++++.
T Consensus 392 ~~~~~e~l~~a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 392 CLPPDEKIVEGIKRLREVVLEYGK 415 (420)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHhhH
Confidence 86 889999999999999988753
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=3.1e-54 Score=427.82 Aligned_cols=378 Identities=19% Similarity=0.320 Sum_probs=320.3
Q ss_pred CccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCC--hHHHHHHHHHHHHcC---CCCCCCCcCcHHHHHHH
Q 012124 66 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG---FTRYTPNAGTLELRSAI 140 (470)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~--~~~~~~a~~~~~~~~---~~~y~~~~g~~~lr~~i 140 (470)
.++.+...++.+.++++.+. ..++++|+|+.|.|+..+ .+.+.+++.+.+... ..+|++..|.++||++|
T Consensus 6 ~~~~~~~~~~~s~ire~~~~-----~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai 80 (403)
T d1wsta1 6 FFSEKAMLMKASEVRELLKL-----VETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL 80 (403)
T ss_dssp GCCHHHHHCCCHHHHHHHHH-----HTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHH-----hCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHH
Confidence 35666777777666555432 245689999999998654 456777788777542 46799999999999999
Q ss_pred HHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 141 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 141 a~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
++|+.+++|.++++++|++|+|+++++..++.+++++||.|++++|+|+.+...+..+|++++.++.+.++.+.......
T Consensus 81 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 160 (403)
T d1wsta1 81 ARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEK 160 (403)
T ss_dssp HHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHH
T ss_pred HHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654322222221
Q ss_pred h-h---hccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEE
Q 012124 221 E-S---KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 296 (470)
Q Consensus 221 ~-~---~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i 296 (470)
. + ..+....++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....++...+. .++++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~-~~~li~De~y~~l~~~~~~~~~~~~~~~-~~~~i~~ 238 (403)
T d1wsta1 161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY-DFLIVEDGPYSELRYSGEPTPPIKHFDD-YGRVIYL 238 (403)
T ss_dssp HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGGCS-SSCEEEE
T ss_pred chhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhc-CceeccccchhheecCCCCCCcccccCC-CCcEEEE
Confidence 1 1 2233455667799999999999999999999999999 9999999999999998877777776665 6899999
Q ss_pred eccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
+||||.++ +|+|+||+++++++++.+.........+.+...|.+...++..+.. +.++++.++.++++++.+.+.|.+
T Consensus 239 ~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~ 316 (403)
T d1wsta1 239 GTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEFYKPRRDAMLEALEE 316 (403)
T ss_dssp EESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999996 9999999999999999999888888888999999999888887654 788999999999999999999987
Q ss_pred C--CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeec-CHHH
Q 012124 377 L--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAA-SLTT 449 (470)
Q Consensus 377 ~--~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~-~~~~ 449 (470)
. .++.+..|.+|+|+|+++|+.. +...+++.|+++ ||.+.||+.|+. ++++||+++. ++++
T Consensus 317 ~~~~~~~~~~p~gg~~~~~~~~~~~-----------~~~~~~~~l~~~-gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~ 384 (403)
T d1wsta1 317 YMPEGVEWTKPEGGMFVRVTLPEGI-----------DTKLMMERAVAK-GVAYVPGEAFFVHRDKKNTMRLNFTYVPEET 384 (403)
T ss_dssp HCCTTCEECCCSBSSEEEEECCTTC-----------CTTTTHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCHHH
T ss_pred hccCCeEEeCCCceeEEEEECCCCC-----------CHHHHHHHHHHC-CEEEEechhhcCCCCCCCEEEEEecCCCHHH
Confidence 3 4688899999999999999764 677788877755 999999998864 4799999986 8999
Q ss_pred HHHHHHHHHHHHHhh
Q 012124 450 LQAAVERIKKGLLTL 464 (470)
Q Consensus 450 i~~~l~~l~~~l~~~ 464 (470)
+++++++|++++++.
T Consensus 385 l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 385 IREGVRRLAETIKEE 399 (403)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-53 Score=416.42 Aligned_cols=363 Identities=29% Similarity=0.511 Sum_probs=315.3
Q ss_pred cCccccccccCCchHHHHHHHHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHH
Q 012124 65 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l 144 (470)
|+++++...++++....+...+.. .++|||+.|+|++++|+.+++++++++.+ ..+|+++.|.++||++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~-----~~~I~ls~g~p~~~~p~~i~~al~~~l~~-~~~Y~~~~G~~elr~aiA~~~ 74 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEF 74 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHH
T ss_pred CCCChhhhhcCCCHHHHHHHHhcc-----CCCEEecCCCCCCCCCHHHHHHHHHHhhc-ccCCCCCcCCHHHHHHHHhhc
Confidence 456788888888777766554443 25799999999999999999999998754 578999999999999999997
Q ss_pred HHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCCCccCHHhHhhh
Q 012124 145 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESK 223 (470)
Q Consensus 145 ~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~ 223 (470)
. +++++|++|+|+++++..++..++++||.|++++|+|+.+...++..|.+++.++++. .+++.+|++.++++
T Consensus 75 ~------~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 148 (368)
T d1v2da_ 75 A------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKA 148 (368)
T ss_dssp T------SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTT
T ss_pred c------cCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHh
Confidence 3 6889999999999999999999999999999999999999999999999999998864 35678999999999
Q ss_pred ccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc
Q 012124 224 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 303 (470)
Q Consensus 224 l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~ 303 (470)
++++++++++++||||||.+++.+++++|+++|++| +++||+||+|..+.+......... .. .++++++.|+||.+
T Consensus 149 ~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~-~i~ii~D~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~sk~~ 224 (368)
T d1v2da_ 149 LTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYYGERPRRLRE-FA--PERTFTVGSAGKRL 224 (368)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCHHH-HC--TTTEEEEEEHHHHT
T ss_pred hccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHc-CCeeeechhhhhhccccccccccc-cc--ccccceeecccccc
Confidence 999999999999999999999999999999999999 999999999998766543322222 22 47788999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec
Q 012124 304 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 383 (470)
Q Consensus 304 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 383 (470)
+++|+|+||+++++++++.+.+.......+++.+.|.++..++..+.. .++++++++.|+++++.+.+.|+++ |+++.
T Consensus 225 ~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 302 (368)
T d1v2da_ 225 EATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLRVY 302 (368)
T ss_dssp TCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred cccccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhc-CcEEe
Confidence 999999999999999999999999989999999999999999886554 6789999999999999999999988 99999
Q ss_pred CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC----CCcEEEEeecCHHHHHHHHHHHHH
Q 012124 384 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD----DTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 384 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~----~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
.|++|+|+|+++|.. +..+ |++++||.+.||+.|+. ++++|||++.+++++++++++|++
T Consensus 303 ~p~g~~~~~~~l~~~------------~~~~----ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~ 366 (368)
T d1v2da_ 303 VPEGTYFLMAELPGW------------DAFR----LVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGR 366 (368)
T ss_dssp CCSBSSEEEEECTTC------------CHHH----HHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred cCCceeEEEEeCCcc------------HHHH----HHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 999999999999854 5443 45567999999999873 479999999899999999999998
Q ss_pred HH
Q 012124 460 GL 461 (470)
Q Consensus 460 ~l 461 (470)
++
T Consensus 367 ~l 368 (368)
T d1v2da_ 367 VV 368 (368)
T ss_dssp HC
T ss_pred hC
Confidence 74
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=2.6e-53 Score=424.21 Aligned_cols=361 Identities=20% Similarity=0.342 Sum_probs=298.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCcCcHHHHHHHHHHHHHHcC--CCCCCCcEEEe
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVS 160 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~i~it 160 (470)
++|+|+.+++.+. .+.+.+.+.+... .....|+++.|.++||++||+|+++.+| +++++++|++|
T Consensus 37 G~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it 115 (431)
T d1m7ya_ 37 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 115 (431)
T ss_dssp SBEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred cEEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEEC
Confidence 5899999998764 3444444333110 0124699999999999999999999887 45778999999
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCccCHHhHhhhcc------CCceEEEE
Q 012124 161 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLT------EKSRLLIL 233 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l~------~~~~~i~l 233 (470)
+|++++++.++.++++|||+|++++|+|+.+...+.. .|+++++++++.+++|.+|++.+++.++ .+++++++
T Consensus 116 ~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 195 (431)
T d1m7ya_ 116 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 195 (431)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEe
Confidence 9999999999999999999999999999999988874 6899999999988889999999988774 36788999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC---------CCCceEEEeccCcccc
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG---------MWERTLTVNGFSKAFA 304 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~---------~~~~~i~i~S~sK~~~ 304 (470)
++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.++.. ..+++++++||||.+|
T Consensus 196 ~nP~NPtG~~~s~~~l~~i~~~a~~~-~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~ 274 (431)
T d1m7ya_ 196 TNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 274 (431)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSC
T ss_pred cCcccccccccccccccccccccccc-CcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCccccc
Confidence 99999999999999999999999999 9999999999999998766665544322 2468999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC
Q 012124 305 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 384 (470)
Q Consensus 305 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 384 (470)
++|+|+||++++++++.......... .+++...|.++.+.+......++++++.++.++++++.+.+.|++. |+++..
T Consensus 275 ~~G~RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~ 352 (431)
T d1m7ya_ 275 LPGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLN 352 (431)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGGG-SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECC
T ss_pred CCCCccceeccchhhhHHHHHHHhcc-ccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEec
Confidence 99999999999988876665544433 3466667777766665422225688999999999999999999886 999999
Q ss_pred CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 385 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 385 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
|++|||+|+++++.... ....++.+++++|++++||.+.||..|+. ++|+||+|+. ++++|+++++||++++
T Consensus 353 p~gg~f~w~~l~~~~~~-----~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l 427 (431)
T d1m7ya_ 353 GNAGLFCWVDMRHLLRS-----NTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFV 427 (431)
T ss_dssp CCSSSEEEEECGGGSSS-----SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEECcccccc-----CcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHH
Confidence 99999999999865311 01124567899999889999999999975 5899999987 7889999999999999
Q ss_pred Hhh
Q 012124 462 LTL 464 (470)
Q Consensus 462 ~~~ 464 (470)
+++
T Consensus 428 ~~~ 430 (431)
T d1m7ya_ 428 GEY 430 (431)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.4e-52 Score=418.43 Aligned_cols=362 Identities=20% Similarity=0.349 Sum_probs=295.4
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHc-----------CCCCCCCCcCcHHHHHHHHHHHHHHcCC--CCCCCcEEEe
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-----------GFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVS 160 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~-----------~~~~y~~~~g~~~lr~~ia~~l~~~~g~--~~~~~~i~it 160 (470)
.++|+|+.+++.+ ..+.+.+.+.+.... ....|+++.|.++||++||+|+.+.+|. ++++++|++|
T Consensus 36 ~G~i~l~~aen~l-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit 114 (428)
T d1iaya_ 36 NGVIQMGLAENQL-CLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMA 114 (428)
T ss_dssp TSBEECSSCCCCS-SHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEE
T ss_pred CceEEeecccCcc-chHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEc
Confidence 4689999998765 334444444332111 1346999999999999999999998874 5678999999
Q ss_pred cChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHH-cCCEEEEecCcCCCCCccCHHhHhhhc------cCCceEEEE
Q 012124 161 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKL------TEKSRLLIL 233 (470)
Q Consensus 161 ~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~l------~~~~~~i~l 233 (470)
+|+++++..++.++++|||.|++++|+|+.+...+.. .|+++++++++.+++|.+|++.+++++ ..+++++++
T Consensus 115 ~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l 194 (428)
T d1iaya_ 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLIL 194 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEE
Confidence 9999999999999999999999999999999887764 589999999998889999999886554 357889999
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCC-------CCCceEEEeccCcccccc
Q 012124 234 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-------MWERTLTVNGFSKAFAMT 306 (470)
Q Consensus 234 ~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~-------~~~~~i~i~S~sK~~~~~ 306 (470)
++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.++.. ..+++++++||||.++++
T Consensus 195 ~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~ 273 (428)
T d1iaya_ 195 TNPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP 273 (428)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG
T ss_pred ccCCCcccccccccccchhheeeccC-cEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCC
Confidence 99999999999999999999999999 9999999999999998776666554321 257899999999999999
Q ss_pred cceeeEEEcC-HHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC
Q 012124 307 GWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 385 (470)
Q Consensus 307 G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 385 (470)
|+|+||++++ +.+++.+...... ...+...|.++.+.+......++++++.++.++++++.+.+.|+.. |+++..|
T Consensus 274 GlRiG~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p 350 (428)
T d1iaya_ 274 GFRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKN 350 (428)
T ss_dssp GGCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCC
T ss_pred Ccccccccccccchhhhhhhhhcc--cccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEecC
Confidence 9999999985 5566666555433 2467777777777665422225678889999999999999999876 8999999
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeec-CHHHHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~-~~~~i~~~l~~l~~~l~ 462 (470)
++|||+|++++..... ....+..+++++|++++||.+.||..|+. ++||||+|+. ++++|+++++||++++.
T Consensus 351 ~gg~f~w~~l~~~~~~-----~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 351 NAGLFCWMDLRPLLRE-----STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp SSSSEEEEECGGGCSS-----SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEECcccccc-----CCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999864311 01113457889999888999999999975 6899999987 77889999999999997
Q ss_pred hhC
Q 012124 463 TLR 465 (470)
Q Consensus 463 ~~~ 465 (470)
..|
T Consensus 426 ~~k 428 (428)
T d1iaya_ 426 VEK 428 (428)
T ss_dssp TTC
T ss_pred hcC
Confidence 543
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3.3e-49 Score=390.94 Aligned_cols=365 Identities=16% Similarity=0.144 Sum_probs=293.2
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCCC---CCCCC--hHHHHHHHHHHHHcCC-CCCCCCcCcHHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFDT--PVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~---~~~~~--~~~~~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l 144 (470)
+...++.++..+.+..+. ...+++|||+.|. ++..+ ++.++++..+.+.++. +.|+++.|.++||+++++++
T Consensus 7 ~~~~p~d~i~~~~~~~~~--d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~ 84 (401)
T d7aata_ 7 VEMGPPDPILGVTEAFKR--DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELA 84 (401)
T ss_dssp CCCCCCCHHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHhC--CCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 334455555555443332 2334679999994 44333 5888999888887654 47999999999999999999
Q ss_pred HHHcCCCCCCCcEEEecChH-----HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHh
Q 012124 145 KEENGLSYTPDQILVSNGAK-----QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 219 (470)
Q Consensus 145 ~~~~g~~~~~~~i~it~g~~-----~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~ 219 (470)
.+.++..+.+++|+++.++. +++..+++.+++|||+|++++|+|++|...++..|++++.+|+.+++++.++++.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 164 (401)
T d7aata_ 85 LGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTG 164 (401)
T ss_dssp HCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred hccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHH
Confidence 98888777788887765443 5788888999999999999999999999999999999999999888889999998
Q ss_pred Hhhhc---cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc--cccCCCCCceE
Q 012124 220 LESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMWERTL 294 (470)
Q Consensus 220 l~~~l---~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~--~~~~~~~~~~i 294 (470)
+.+.+ .++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++...... .......++++
T Consensus 165 ~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (401)
T d7aata_ 165 AMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVV 243 (401)
T ss_dssp HHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCE
T ss_pred HHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc-eEEEEEeccchhhhcCCcccchhhhhhhhhhhcccc
Confidence 88776 35788899999999999999999999999999999 99999999999999976433222 12222357789
Q ss_pred EEeccCcccccccceeeEEEcCHHHHHHHHHH-------hhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHH
Q 012124 295 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 364 (470)
Q Consensus 295 ~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~ 364 (470)
++.|+||.++++|+|+||++++.++++.+.+. ......+++.+.|.++...+.++.+ ...+++.++++|+
T Consensus 244 ~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 323 (401)
T d7aata_ 244 LSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRII 323 (401)
T ss_dssp EEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987766655433 3344567899999999998886432 1355778888999
Q ss_pred HHHHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEE
Q 012124 365 ERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRI 441 (470)
Q Consensus 365 ~~~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRl 441 (470)
++|+.+.+.|+++. .|.+..|++|||+|+.++ .+++++|++++||.+.||. ||
T Consensus 324 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~e~~~~L~~e~gV~~~pg~--------Ri 379 (401)
T d7aata_ 324 SMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------------PEQVERLTKEFSIYMTKDG--------RI 379 (401)
T ss_dssp HHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC--------EE
T ss_pred HHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC----------------HHHHHHHHHhCCEEECCCc--------EE
Confidence 99999999998862 256678999999997652 3567889888999999984 99
Q ss_pred Eeec-CHHHHHHHHHHHHHHHH
Q 012124 442 SYAA-SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 442 s~~~-~~~~i~~~l~~l~~~l~ 462 (470)
|++. ++++|+.+.++|.++++
T Consensus 380 s~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 380 SVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHC
T ss_pred EeccCCHHHHHHHHHHHHHHhC
Confidence 9997 88899999998888764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.2e-47 Score=370.62 Aligned_cols=333 Identities=20% Similarity=0.281 Sum_probs=278.7
Q ss_pred cCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHH
Q 012124 92 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 171 (470)
Q Consensus 92 ~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~ 171 (470)
.+.++|||+.|.+++++|+.+++++.+.+.. ...| |..|..+||++|++++ | +++++|++|+|+++++.+++
T Consensus 20 ~p~~~idls~~~np~~~p~~~~~a~~~~~~~-~~~Y-p~~~~~~Lr~aia~~~----~--v~~~~I~~~~g~~~~~~~~~ 91 (355)
T d1lc5a_ 20 SPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERY-PDADYFHLHQALARHH----Q--VPASWILAGNGETESIFTVA 91 (355)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSC-CCTTCHHHHHHHHHHH----T--SCGGGEEEESSHHHHHHHHH
T ss_pred ChhheEEccCCCCCCCCCHHHHHHHHHHHHH-hccC-CCCChHHHHHHHHHHh----C--CCHHHEEecccHHHHHHHHH
Confidence 3336899999998888999999999887654 6678 6667799999999997 3 57899999999999999887
Q ss_pred HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHH
Q 012124 172 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 251 (470)
Q Consensus 172 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~ 251 (470)
..+ .++.+++..|.|..|.......+++++.+|++.++++.++ +.+++.+.++++++++++||||||.+++.+++++
T Consensus 92 ~~~--~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~ 168 (355)
T d1lc5a_ 92 SGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQA 168 (355)
T ss_dssp HHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred hhh--ccccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccchhhhhhh
Confidence 765 4566677889999999999999999999999887777666 5677778889999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH-HHHHHHhhhc
Q 012124 252 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV-AACNKIQSQF 330 (470)
Q Consensus 252 l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~-~~l~~~~~~~ 330 (470)
|+++|++| +++||+||+|.++.+.+..... .....+++++++||||.+|+||+|+||++++.+.+ +.+++.. .
T Consensus 169 i~~~a~~~-~~~li~De~y~~~~~~~~~~~~---~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~--~ 242 (355)
T d1lc5a_ 169 IADRCKSL-NINLILDEAFIDFIPHETGFIP---ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ--M 242 (355)
T ss_dssp HHHHHHHH-TCEEEEECTTGGGSTTCCCSGG---GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS--C
T ss_pred hhhhcccc-ccccccccceeeeeeecccccc---cccccccceeecccccccccccccccceeccchhhhHHHHhhc--C
Confidence 99999999 9999999999998766543222 22236899999999999999999999999986644 4454433 3
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCC
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 410 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 410 (470)
.++.+.+.|.++..++++ ..++.+.++.++++++.+.+.|.+++++.+. |.+|+|+|++++.
T Consensus 243 ~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~------------- 304 (355)
T d1lc5a_ 243 PWSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER------------- 304 (355)
T ss_dssp TTCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC-------------
T ss_pred Cccccccccccccccccc----cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC-------------
Confidence 456889999999999985 7889999999999999999999998888765 6677889999875
Q ss_pred CHHHHHHHHHHcCCEEEECCCCCCC--CCcEEEEeecCHHHHHHHHHHHHHHH
Q 012124 411 NSESLCRYLLDKAQVALVPGDAFGD--DTCIRISYAASLTTLQAAVERIKKGL 461 (470)
Q Consensus 411 ~~~~l~~~L~~~~gI~v~pg~~f~~--~~~iRls~~~~~~~i~~~l~~l~~~l 461 (470)
++.+++++|+++ ||.|+||..|+. ++|+||+++ +++++++++++|++++
T Consensus 305 ~~~~~~~~L~~~-gv~vr~~~~f~~~~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 305 EDIDLQRRLLTQ-RILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp TTCCHHHHHHTT-TEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHC-CcEEEeCccCCCCCCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 456788888755 999999998863 579999986 6788999999988764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.5e-46 Score=358.49 Aligned_cols=324 Identities=21% Similarity=0.295 Sum_probs=266.4
Q ss_pred HHHHHHhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 85 QATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 85 ~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
.+..+...++++|+|+.|++++++|+.+.+++.+.+..+..+|.|..|.++||++|++|+.+ .+ +++|+|++|+|++
T Consensus 10 ~~~~~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~-~~--v~~d~I~it~G~~ 86 (334)
T d2f8ja1 10 RAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDT-DF--LSKNNVSVGNGAD 86 (334)
T ss_dssp HSCCCCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTC-SS--CCGGGEEEEEHHH
T ss_pred hcccccccCCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcc-cC--CCcceEEecCcch
Confidence 33444456789999999999999999999999998877666666889999999999999865 34 5789999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 165 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 165 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
++|+++++ +||+|++++|+|+.|...++.+|++++.+|++.+.. .+ +...++++++++++||||||.++
T Consensus 87 ~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPtG~~~ 155 (334)
T d2f8ja1 87 EIIYVMML----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPTGHVF 155 (334)
T ss_dssp HHHHHHHH----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTTCCCC
T ss_pred hHHHHHhh----hccccccccccccccccchhccCCcccccccccccc--cc-----ccccccceEEEecccccccceee
Confidence 99987654 579999999999999999999999999999975432 11 23445789999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+.+++++ + .++ +++||+||+|.++.+..... ... ..+++++++||||.++++|+|+||+++++++++++.
T Consensus 156 s~~~l~~---~-~~~-~~~ii~Dd~~~~~~~~~~~~----~~~-~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~ 225 (334)
T d2f8ja1 156 EREEIER---I-LKT-GAFVALDEAYYEFHGESYVD----FLK-KYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYN 225 (334)
T ss_dssp CHHHHHH---H-HTT-TCEEEEECTTGGGTCCCCGG----GGG-TCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHH
T ss_pred cHHHhhc---c-ccc-eeEEeecccchhhccccccc----ccc-cCceEEEEecCccccchhhhhhhhcccchHHHHHHH
Confidence 9666544 3 456 79999999998765432211 111 258999999999999999999999999999999998
Q ss_pred HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCccc
Q 012124 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 404 (470)
Q Consensus 325 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 404 (470)
..+.. .+.+.+.|.++...+.. .+++++.++.|+++++.+.+.|+++ |+++.++.++ |+|+.++..
T Consensus 226 ~~~~~--~~~s~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~~~------ 291 (334)
T d2f8ja1 226 RVRLP--FNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFMEKE------ 291 (334)
T ss_dssp HHSCT--TCSCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECCHH------
T ss_pred Hhhcc--cccchhhhhhccccccc----ccchhhHHHHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECCCC------
Confidence 87654 45889999999888875 7889999999999999999999998 8999888776 588888764
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHHHHH
Q 012124 405 GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVERIKK 459 (470)
Q Consensus 405 ~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~l~~ 459 (470)
+..++++.|+++ ||.+.++ ++|+|||++ +.+++++++++|++
T Consensus 292 ------~~~~~~~~L~~~-GI~vr~~-----~~~vRis~g-~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 292 ------EKERLLEHLRTK-NVAVRSF-----REGVRITIG-KREENDMILRELEV 333 (334)
T ss_dssp ------HHHHHHHHHHHT-TEECEEE-----TTEEEEECC-CHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHC-CCEECCC-----CCeEEEEcC-CHHHHHHHHHHHhc
Confidence 678899888765 9998763 579999996 55677888888765
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=7.7e-46 Score=367.55 Aligned_cols=367 Identities=16% Similarity=0.150 Sum_probs=284.4
Q ss_pred cccccCCchHHHHHHHHHHHHhcC-CCeEEccCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHH
Q 012124 70 RVNAVKPSKTVAITDQATALAQAG-VSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAIC 141 (470)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g---~~~~~~--~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia 141 (470)
++...++.++..+. ....++. ++.|||+.| +++..+ ++.++++.+....+ ..+.|+|..|.++||++++
T Consensus 7 ~~~~~~~d~i~~~~---~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia 83 (412)
T d1yaaa_ 7 NIELLPPDALFGIK---QRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAA 83 (412)
T ss_dssp TCCCCCCCTTHHHH---HHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHH
T ss_pred cCCcCCCChHHHHH---HHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHH
Confidence 46666776665444 3344433 357999999 455433 47777775554433 3567999999999999999
Q ss_pred HHHHHHcCCCCCCCcEEE--ecChHHHHHHHH--HHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCH
Q 012124 142 HKLKEENGLSYTPDQILV--SNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 217 (470)
Q Consensus 142 ~~l~~~~g~~~~~~~i~i--t~g~~~al~~~~--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 217 (470)
+++.+..+....++.+++ +.|+..++..++ ..+..|||+|++++|+|+.|...++..|++++.+|+..++++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~ 163 (412)
T d1yaaa_ 84 KIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDL 163 (412)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECH
T ss_pred HHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccccccc
Confidence 999877665444444443 344555544443 3457899999999999999999999999999999998888888999
Q ss_pred HhHhhhcc---CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccc-----cccCCC
Q 012124 218 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF-----ASLPGM 289 (470)
Q Consensus 218 ~~l~~~l~---~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~-----~~~~~~ 289 (470)
+.+++.+. ++++++++++||||||.++|.+++++|+++|+++ +++||+||+|.++.|++....+. ......
T Consensus 164 ~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T d1yaaa_ 164 NGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST 242 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT
T ss_pred hhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC-CEEEeecceeeecccCCcccchhhhhhhhhcccc
Confidence 98887773 4566788899999999999999999999999999 99999999999999976433322 122334
Q ss_pred CCceEEEeccCcccccccceeeEEEcCHHHHHH-----------HHHHhhhccCCCChHHHHHHHHHHhcCCC---ChHH
Q 012124 290 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA-----------CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEV 355 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~ 355 (470)
.+++|++.||||.++++|+|+||++++.++++. ..........+++.+.|.++..++.++.. ..++
T Consensus 243 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 322 (412)
T d1yaaa_ 243 VSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKD 322 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHH
Confidence 688999999999999999999999988544322 22334456778999999999999886422 1356
Q ss_pred HHHHHHHHHHHHHHHHHHhccC--CC-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 356 VSKMVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~L~~~--~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
++.+++.|+++|+.+.+.|+++ ++ |.+..|++|||+|+.+ +.+++++|++++||.+.||.
T Consensus 323 ~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~l----------------s~e~~~~L~~e~~V~~~~g~- 385 (412)
T d1yaaa_ 323 MVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL----------------TPQMVKRLEETHAVYLVASG- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC----------------CHHHHHHHHHHHCEECCTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCc----------------CHHHHHHHHHhCCEEECCCC-
Confidence 7888999999999999999885 22 6677899999999765 23568889899999999975
Q ss_pred CCCCCcEEEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 433 FGDDTCIRISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 433 f~~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
|||++. +++.++.+.++|+++++.+
T Consensus 386 -------Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 386 -------RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp -------EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred -------EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 999986 8888999999999988754
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-47 Score=379.22 Aligned_cols=343 Identities=18% Similarity=0.142 Sum_probs=276.4
Q ss_pred CCeEEccCCC---CCCCC--hHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHH
Q 012124 94 VSVIRLAAGE---PDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 166 (470)
Q Consensus 94 ~~~i~l~~g~---~~~~~--~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~a 166 (470)
.+.|||+.|. ++..+ ++.+++|....... ..+.|+|..|.++||+++++++.+.++..+++++|+++.|++++
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~ 105 (397)
T d3tata_ 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHH
T ss_pred CCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhH
Confidence 4569999993 44333 57788876655433 35679999999999999999999888877888999988777664
Q ss_pred ----HHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCCC
Q 012124 167 ----ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNP 239 (470)
Q Consensus 167 ----l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~nP 239 (470)
+.+++..+++|||+|++++|+|++|...++.+|++++.+|++.++++.+|.+.+.+.+. ++++++++++||||
T Consensus 106 ~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NP 185 (397)
T d3tata_ 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNP 185 (397)
T ss_dssp HHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSS
T ss_pred HHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCC
Confidence 66666677899999999999999999999999999999999988888889888777653 56778889999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcc-cccccCCCCCceEEEeccCcccccccceeeEEEcCHH
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 318 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~ 318 (470)
||.++|.+++++|+++|++| +++||+||+|.++.|++.... .+.......+++|++.||||.++++|+|+||++++..
T Consensus 186 TG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 264 (397)
T d3tata_ 186 TGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCE 264 (397)
T ss_dssp SCCCCCHHHHHHHHHHHHHT-TCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECS
T ss_pred CCeeCCHHHHHHHHHHHhhc-CeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchh
Confidence 99999999999999999999 999999999999998754332 2222333357899999999999999999999998765
Q ss_pred HHHHHH-------HHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHHHHHhccC-CC--CeecCC
Q 012124 319 FVAACN-------KIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGEL-EG--VKMSEP 385 (470)
Q Consensus 319 ~~~~l~-------~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~g--~~~~~~ 385 (470)
+++... ........+++...|.++...+.+... ..++++.++++++++++.+.+.|.+. ++ +.+..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~ 344 (397)
T d3tata_ 265 DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN 344 (397)
T ss_dssp STTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcC
Confidence 544333 233445667888999988888875321 13456677888899999999999875 22 667789
Q ss_pred CceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-CHHHHHHHHHHHHHHH
Q 012124 386 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 386 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~-~~~~i~~~l~~l~~~l 461 (470)
.+|||+|+.++ .+++++|++++||.+.||. |||++. ++++|+.+.++|++++
T Consensus 345 ~~G~F~~~~ls----------------~e~~~~L~~e~~V~l~~g~--------Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 345 QRGMFSYTGLS----------------AAQVDRLREEFGVYLIASG--------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp CCSSBCCCCCC----------------HHHHHHHTTTTCEECCSSS--------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred CCceEEecCcC----------------HHHHHHHHHhCCEEeCCCC--------EEEeccCCHHHHHHHHHHHHHhC
Confidence 99999998763 3567889999999999985 999987 8888998888887763
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.1e-45 Score=366.88 Aligned_cols=367 Identities=16% Similarity=0.171 Sum_probs=279.4
Q ss_pred ccccCCchHHHHHHHHHHHHhc-CCCeEEccCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCcCcHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQA-GVSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICH 142 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g---~~~~~~--~~~~~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~ 142 (470)
+...++.++.. .+.+..++ .+++|||+.| +++..+ ++.++++......+ ..++|+|..|.++||+++++
T Consensus 9 ~~~~~~~~i~~---l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~ 85 (412)
T d1ajsa_ 9 VPQAQPVLVFK---LIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASR 85 (412)
T ss_dssp CCCCCCCHHHH---HHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHH
T ss_pred CCcCCCChHHH---HHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHH
Confidence 44444554444 44444443 3467999999 444333 47777776655443 24679999999999999999
Q ss_pred HHHHHcCCCCCCCcEE--EecChHHHHHHHHHH-------hcCCCCeEEEcCCCCCChHHHHHHcCCEEEEe-cCcCCCC
Q 012124 143 KLKEENGLSYTPDQIL--VSNGAKQSILQAVLA-------VCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISEN 212 (470)
Q Consensus 143 ~l~~~~g~~~~~~~i~--it~g~~~al~~~~~~-------l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v-~~~~~~~ 212 (470)
++.+.++..+..++++ .|.|.+.++..+... +++|||+|++++|+|++|..+++..|++.+.+ +...+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~ 165 (412)
T d1ajsa_ 86 LALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEK 165 (412)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTT
T ss_pred HHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccccccc
Confidence 9988777666666654 455555555444333 47999999999999999999999999986655 4445566
Q ss_pred CccCHHhHhhhc---cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccc--ccccC
Q 012124 213 FLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--FASLP 287 (470)
Q Consensus 213 ~~~d~~~l~~~l---~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~--~~~~~ 287 (470)
+.+|++.+++.+ .++++++++++||||||.++|.+++++|+++|++| |++||+||+|.++.|++..... .....
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 244 (412)
T d1ajsa_ 166 RGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIRYFV 244 (412)
T ss_dssp TEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred ccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC-CEEEEecHhhhhhhcCCcccchhhhhhhh
Confidence 778988877664 56788888999999999999999999999999999 9999999999999987643222 12222
Q ss_pred CCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH-------HHhhhccCCCChHHHHHHHHHHhcCCC---ChHHHH
Q 012124 288 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-------KIQSQFTSGASSISQKAGVAALGLGYA---GGEVVS 357 (470)
Q Consensus 288 ~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~-------~~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~ 357 (470)
...++++++.|+||.++++|+|+||++++.+.++.+. ........+++.+.|.++..++.+... ..++++
T Consensus 245 ~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (412)
T d1ajsa_ 245 SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVK 324 (412)
T ss_dssp HTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred hhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2357889999999999999999999999865544443 333445667889999998888765221 145677
Q ss_pred HHHHHHHHHHHHHHHHhccCC--C-CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC
Q 012124 358 KMVKAFRERRDFLVKSFGELE--G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG 434 (470)
Q Consensus 358 ~~~~~~~~~~~~l~~~L~~~~--g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~ 434 (470)
.++++|+++|+.+.+.|+++. + +.+..+++|||.|+.+ + .+++++|++++||.+.||.
T Consensus 325 ~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l---------------s-~~~v~~L~~e~gV~~vpg~--- 385 (412)
T d1ajsa_ 325 TMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL---------------N-PKQVEYLINQKHIYLLPSG--- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC---------------C-HHHHHHHHHTTCEECCTTS---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC---------------C-HHHHHHHHHhCCEEEeCCC---
Confidence 889999999999999998862 2 5567788999999654 2 3556788889999999985
Q ss_pred CCCcEEEEeec-CHHHHHHHHHHHHHHHHhhC
Q 012124 435 DDTCIRISYAA-SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 435 ~~~~iRls~~~-~~~~i~~~l~~l~~~l~~~~ 465 (470)
|||++. ++++++.++++|++++++++
T Consensus 386 -----Ri~~ag~~~~~i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 386 -----RINMCGLTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp -----EEEGGGCCTTTHHHHHHHHHHHHHHCC
T ss_pred -----eEEeccCCHHHHHHHHHHHHHHHHhcC
Confidence 999986 88999999999999998864
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-44 Score=351.27 Aligned_cols=322 Identities=21% Similarity=0.357 Sum_probs=261.6
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 173 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~ 173 (470)
.+.|.|+.|++++.+++.+.+ ....+| |..+..+||++|++++ | +++|+|++|+|+++++.+++++
T Consensus 27 ~~~i~L~~ne~p~~~~~~~~~-------~~l~rY-Pd~~~~~Lr~~ia~~~----g--v~pe~I~it~Gs~eai~~~~~~ 92 (354)
T d1fg7a_ 27 NGDVWLNANEYPTAVEFQLTQ-------QTLNRY-PECQPKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRA 92 (354)
T ss_dssp TCSEECSSCCCSSCCCCCCCC-------CCTTSC-CCSSCHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHH
T ss_pred CCCEEeeCCCCCCCCCHHHHH-------HHHhcC-CCCcHHHHHHHHHHHh----C--CChHHeeeccCchHHHHHHHHH
Confidence 457999999877666543322 235678 6667789999999997 4 6899999999999999999999
Q ss_pred hcCCCC-eEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHH
Q 012124 174 VCSPGD-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 252 (470)
Q Consensus 174 l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l 252 (470)
+++||| .|++++|+|+.|...++..|.+++.++.+ ++|.+|++.+++.+. +++++++++||||||.+++.++++.+
T Consensus 93 ~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~--~~~~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~ 169 (354)
T d1fg7a_ 93 FCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTL 169 (354)
T ss_dssp HCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred hhccccccccccccccccchhhhhccCceeeccccc--cccccchhhhhhccc-ccceeeccCCCccceeEeeecccccc
Confidence 999998 58889999999999999999999999885 568899999998874 79999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccC
Q 012124 253 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 332 (470)
Q Consensus 253 ~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~ 332 (470)
.+.+++ +.++|+||+|.+|.++... .......+++++++||||.||++|+|+||+++++++++.+.+....+
T Consensus 170 ~~~~~~--~~~~iidd~~~~f~~~~~~----~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~-- 241 (354)
T d1fg7a_ 170 LELTRG--KAIVVADEAYIEFCPQASL----AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY-- 241 (354)
T ss_dssp HHHHTT--TCEEEEECTTGGGSGGGCS----GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--
T ss_pred cccccc--cccccccccchhhcccccc----chhhcccccceEEeCCccccCCCccccccccccchhhhhhhhhcCcc--
Confidence 888865 4677778888887654321 12223368899999999999999999999999999999998876544
Q ss_pred CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCCCCCCCH
Q 012124 333 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 412 (470)
Q Consensus 333 ~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (470)
+.+.+.|.++..++... ...+.....+.+.++++.+.+.+.+++++....|.+++|+|++++ ++
T Consensus 242 ~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~--------------~~ 305 (354)
T d1fg7a_ 242 PLSTPVADIAAQALSPQ--GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------AS 305 (354)
T ss_dssp CSCHHHHHHHHHHTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------TH
T ss_pred chhhHHHHHHHHHHhhh--ccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC--------------CH
Confidence 46777777777666532 134456666778888999999999987776667888899999986 56
Q ss_pred HHHHHHHHHcCCEEEECCCCC-CCCCcEEEEeecCHHHHHHHHHHHH
Q 012124 413 ESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAASLTTLQAAVERIK 458 (470)
Q Consensus 413 ~~l~~~L~~~~gI~v~pg~~f-~~~~~iRls~~~~~~~i~~~l~~l~ 458 (470)
.++++.|+++ ||.|+++..| +.++|+|+|++ ++++++.++++|+
T Consensus 306 ~~~~~~L~~~-gIlvr~~~~~~~~~~~lRisig-t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 306 SAVFKSLWDQ-GIILRDQNKQPSLSGCLRITVG-TREESQRVIDALR 350 (354)
T ss_dssp HHHHHHHHHT-TEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CcEEecCCCCCCCCCEEEEEeC-CHHHHHHHHHHHh
Confidence 7888888766 9999998876 45789999996 5677777777765
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-46 Score=366.87 Aligned_cols=364 Identities=15% Similarity=0.126 Sum_probs=274.9
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCCeEEccCC---CCCC--CChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHH
Q 012124 71 VNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDF--DTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g---~~~~--~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l 144 (470)
+...++.++..+.+..+.. ..++.|||+.| +++. +.++.++++..+.+.++ .+.|++..|.++||+++++++
T Consensus 5 ~~~~p~d~i~~~~~~~~~d--~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~ 82 (396)
T d2q7wa1 5 ITAAPADPILGLADLFRAD--ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELL 82 (396)
T ss_dssp CCCCCC-------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHH
T ss_pred cccCCCChHHHHHHHHhcc--CCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHH
Confidence 4445555555554433322 23356999999 3443 33588999988887764 457999999999999999999
Q ss_pred HHHcCCCCCCCcE--EEecChHHHHHHHHH--HhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhH
Q 012124 145 KEENGLSYTPDQI--LVSNGAKQSILQAVL--AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 220 (470)
Q Consensus 145 ~~~~g~~~~~~~i--~it~g~~~al~~~~~--~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 220 (470)
.++++..+.++.+ ++|.|+..++.+++. ...++||.|++++|+|++|..+++.+|++++.++...++++..+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 162 (396)
T d2q7wa1 83 FGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDAL 162 (396)
T ss_dssp HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHH
T ss_pred HhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchH
Confidence 9877765555544 456677666655544 346899999999999999999999999999999999888877787776
Q ss_pred hhhc---cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccc-ccCCCCCceEEE
Q 012124 221 ESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTV 296 (470)
Q Consensus 221 ~~~l---~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~-~~~~~~~~~i~i 296 (470)
++.. .++++++++++||||||.++|.+++++|+++|++| +++||+||+|.++.|++....... ......++++++
T Consensus 163 ~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (396)
T d2q7wa1 163 INSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVA 241 (396)
T ss_dssp HHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEE
T ss_pred HHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC-CeEEEEeccccccccCCccCchHhhhhhhhccccccc
Confidence 6644 45777888899999999999999999999999999 999999999999998754333222 222235788999
Q ss_pred eccCcccccccceeeEEEcCHHHHHHHHHHh-------hhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHH
Q 012124 297 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRER 366 (470)
Q Consensus 297 ~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~ 366 (470)
.|+||.++++|+|+||++++...++.+.... .....+++...|.++..++.++.. ..+++++++++|+++
T Consensus 242 ~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (396)
T d2q7wa1 242 SSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRM 321 (396)
T ss_dssp EECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHH
T ss_pred ccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877666554432 334567888888888888765321 146788899999999
Q ss_pred HHHHHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe
Q 012124 367 RDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY 443 (470)
Q Consensus 367 ~~~l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~ 443 (470)
++.+.+.|+++. .|.+..+.+|||+|+.++ .+++++|++++||.+.||+ |+|+
T Consensus 322 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~----------------~e~~~~L~~e~gV~~~~g~--------Ri~~ 377 (396)
T d2q7wa1 322 RQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------KEQVLRLREEFGVYAVASG--------RVNV 377 (396)
T ss_dssp HHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC--------EEEG
T ss_pred HHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC----------------HHHHHHHHHhCCEEECCCC--------EEEe
Confidence 999999998862 155667889999997653 3567889888999999975 9999
Q ss_pred ec-CHHHHHHHHHHHHHHH
Q 012124 444 AA-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 444 ~~-~~~~i~~~l~~l~~~l 461 (470)
+. ++++|+.++++|++++
T Consensus 378 a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 378 AGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp GGCCTTTHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhC
Confidence 87 8889999999888763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=7.9e-45 Score=358.70 Aligned_cols=361 Identities=16% Similarity=0.115 Sum_probs=275.1
Q ss_pred cccCCchHHHHHHHHHHHHhcC-CCeEEccCCC---CCC--CChHHHHHHHHHHHHcC-CCCCCCCcCcHHHHHHHHHHH
Q 012124 72 NAVKPSKTVAITDQATALAQAG-VSVIRLAAGE---PDF--DTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 144 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~---~~~--~~~~~~~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~l 144 (470)
+..++.++..+ ....+++. ++.|+|+.|. ++. ++++.+.+++.+.+.+. .+.|+|..|.++||+++++++
T Consensus 6 ~~~~~d~i~~l---~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~ 82 (394)
T d2ay1a_ 6 KPQAPDKILAL---MGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELI 82 (394)
T ss_dssp CCCCCCSHHHH---HHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHH
T ss_pred CCCCCChHHHH---HHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 33444444444 33333333 3679999994 332 33588999998888764 457999999999999999999
Q ss_pred HHHcCCCCCCCcEEEecCh-HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhh
Q 012124 145 KEENGLSYTPDQILVSNGA-KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 223 (470)
Q Consensus 145 ~~~~g~~~~~~~i~it~g~-~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 223 (470)
.+..+.....+.+++++|+ +.++.+.+..+.++||.|++++|+|++|..+++.+|++++.+++..++++..+.+.+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 162 (394)
T d2ay1a_ 83 LGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKAD 162 (394)
T ss_dssp HGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHH
T ss_pred hccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHH
Confidence 8766654334444444433 344666666778999999999999999999999999999999998877777777776665
Q ss_pred c---cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCccccccc-CCCCCceEEEecc
Q 012124 224 L---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGF 299 (470)
Q Consensus 224 l---~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~S~ 299 (470)
. .++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++... .....+++++.|+
T Consensus 163 ~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~ 241 (394)
T d2ay1a_ 163 LAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASC 241 (394)
T ss_dssp HHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred HhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc-eEEEEEeccchhhcccccccchhhhhhhhhcccccccccc
Confidence 4 44667777899999999999999999999999999 99999999999999875433333221 1124678999999
Q ss_pred CcccccccceeeEEEcCHHHHHHHHH-------HhhhccCCCChHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHH
Q 012124 300 SKAFAMTGWRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 300 sK~~~~~G~r~G~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~~ 369 (470)
||.++++|+|+||++++...++...+ .......+++...|.++...+.+..+ ..++++.++++|+++|+.
T Consensus 242 sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~ 321 (394)
T d2ay1a_ 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQ 321 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765554432 23344567888888888887765322 145677888999999999
Q ss_pred HHHHhccCC---CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec-
Q 012124 370 LVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA- 445 (470)
Q Consensus 370 l~~~L~~~~---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~- 445 (470)
+.+.|+++. .|.+..|++|||+|+.++ .+++++|++++||.+.||. |||++.
T Consensus 322 l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~~~~~~L~~~~~V~~~~g~--------Ri~~a~l 377 (394)
T d2ay1a_ 322 LAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------------PEQVKRIKEEFGIYMVGDS--------RINIAGL 377 (394)
T ss_dssp HHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEECCTTC--------EEEGGGC
T ss_pred HHHHHHHhCCCCceeeECCCceeEEecCcC----------------HHHHHHHHHhCCEEecCCC--------EEEecCC
Confidence 999998752 267778999999998653 3567889888999999974 999987
Q ss_pred CHHHHHHHHHHHHHH
Q 012124 446 SLTTLQAAVERIKKG 460 (470)
Q Consensus 446 ~~~~i~~~l~~l~~~ 460 (470)
++++|+.+.++|.++
T Consensus 378 ~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 378 NDNTIPILARAIIEV 392 (394)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888877777654
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=2e-40 Score=325.97 Aligned_cols=329 Identities=15% Similarity=0.162 Sum_probs=252.8
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHH-cC--CCCCCCCcC----cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIR-EG--FTRYTPNAG----TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~-~~--~~~y~~~~g----~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
-++|+..|+|.+..|-....+...+.. .+ .+.|....+ .++|+++|+++.....+..+++.+|++++|++++|
T Consensus 57 ~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli 136 (425)
T d2hoxa1 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLI 136 (425)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHH
T ss_pred ceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHH
Confidence 469999999987544333333333322 12 233443322 28999999999887666656666899999999999
Q ss_pred HHHHHHh--------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCC
Q 012124 168 LQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 239 (470)
Q Consensus 168 ~~~~~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nP 239 (470)
++++.+| ++|||+|+++.|+|+.|....+..+.+.+ +|.+|.+.++++++++++++++++||||
T Consensus 137 ~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~--------~~~~D~~~~~~~~~~~~~ii~l~sPnNP 208 (425)
T d2hoxa1 137 HGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNP 208 (425)
T ss_dssp HHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTE--------EEEEEGGGGTTCSCGGGEEEEEESSCTT
T ss_pred HHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCC--------ccCCCHHHHHhhCCCCceEEEEECCCCC
Confidence 9999999 57999999999999999999998886543 3457889999999899999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CHH
Q 012124 240 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKH 318 (470)
Q Consensus 240 tG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~ 318 (470)
||.+.. +..+ ++.+|.||+|.+..|. + +....+++|++.||||.+|++|+|+||+++ ++.
T Consensus 209 tG~l~~----------~v~~-~~~~I~DEaY~~~~f~-----~---~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~ 269 (425)
T d2hoxa1 209 EGLLRH----------AVIK-GCKSIYDMVYYWPHYT-----P---IKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269 (425)
T ss_dssp TCCCCC----------CSST-TCEEEEECTTCSTTTS-----C---CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred Ccchhh----------hhhh-CCEEEEeccccCcccc-----c---hhhhcCCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence 998632 2346 8999999999653332 2 233367899999999999999999999765 577
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-------
Q 012124 319 FVAACNKIQSQFTSGASSISQKAGVAALGLG--------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS------- 383 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~------- 383 (470)
+++++.+.......+++.+.|.++..+|+.. ....++.+..++.++++++.+.+.|.+.+++.+.
T Consensus 270 i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~ 349 (425)
T d2hoxa1 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEY 349 (425)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEE
T ss_pred HHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccc
Confidence 8888998888888999999999999888641 0124567788899999999999999876433221
Q ss_pred -------CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-CCcEEEEeecCHHHHHHHHH
Q 012124 384 -------EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-DTCIRISYAASLTTLQAAVE 455 (470)
Q Consensus 384 -------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-~~~iRls~~~~~~~i~~~l~ 455 (470)
.+..+.|+|+++... ..+++.++++++||.++||..|+. ++++|||+..++++++++++
T Consensus 350 ~~f~~~~~~~~~~f~wl~~~~~-------------~~~~~~~lL~e~gI~v~pGs~FG~~~~yvRisl~~~~e~ld~~l~ 416 (425)
T d2hoxa1 350 CNYFRRMRPPSPSYAWVKCEWE-------------EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMY 416 (425)
T ss_dssp ETTTTEEECCCCSEEEEEECSG-------------GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHH
T ss_pred eeeeeeccCCCcceeeeeCCCC-------------hHHHHHHHHHhCCEEEEechhcCCCCCEEEEEecCCHHHHHHHHH
Confidence 223344578777542 333445566677999999999985 57999999999999999999
Q ss_pred HHHHHHHh
Q 012124 456 RIKKGLLT 463 (470)
Q Consensus 456 ~l~~~l~~ 463 (470)
||++++++
T Consensus 417 rL~~~v~a 424 (425)
T d2hoxa1 417 YLKDMVKA 424 (425)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99999863
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=2.6e-30 Score=251.06 Aligned_cols=316 Identities=15% Similarity=0.081 Sum_probs=224.3
Q ss_pred hcCC-CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHH
Q 012124 91 QAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 169 (470)
Q Consensus 91 ~~~~-~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~ 169 (470)
+.|+ .++++.....+++.++...+.+.. .+++..+.+++++..++++. . ...+++++|+|+++|+..
T Consensus 16 ~~g~~~i~~~~gl~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~----~-~~~e~~~~~~~~~~a~~~ 83 (366)
T d2aeua1 16 EKGRDALYDLSGLSGGFLIDEKDKALLNT-------YIGSSYFAEKVNEYGLKHLG----G-DENDKCVGFNRTSSAILA 83 (366)
T ss_dssp HTCGGGCEECSSCCCCCCCCHHHHHHHTS-------TTHHHHHHHHHHHHHHHHHT----C-CTTEEEEEESSHHHHHHH
T ss_pred hhccchHhhhccCCCCCCccHHHHHHHHH-------hcCchhhHHHHHHHHHHHcc----C-CCccEEEEeCCHHHHHHH
Confidence 3454 467888777776666655544321 23344566778887777763 2 245789999999999999
Q ss_pred HHHHhcCCCCeE-EE-cCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHH
Q 012124 170 AVLAVCSPGDEV-II-PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 170 ~~~~l~~~gd~V-lv-~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
++.++. +||.| ++ +.|+|+.+...++..|++++.. -|+|+|++++++++++|++++|+||+ .++.+
T Consensus 84 ~l~al~-~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~---------~d~e~l~~~i~~~tk~i~~~~p~n~~--~~~~~ 151 (366)
T d2aeua1 84 TILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNKIDKDTLVIITGSTMDLK--VIELE 151 (366)
T ss_dssp HHHHHC-CSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTTCCTTEEEEEECBCTTSC--BCCHH
T ss_pred HHHHhC-CCCEEEEecCCCcchhHHHHHHhcCCeEECC---------CCHHHHHHhcCCCceEEEEEecCCCC--cCCHH
Confidence 999876 55554 44 4689999999999999986532 18999999999999999999999986 46778
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 327 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~ 327 (470)
++++|+++|++| |++||+||+|+.+.|+....+..... +..+++.|+||.+ +|+|+||+++++++++.+....
T Consensus 152 ~l~~i~~ia~~~-~~~~i~De~y~~~~~~~~~~~~~~~~----~~di~~~S~sK~~--~g~~~G~i~~~~~~i~~~~~~~ 224 (366)
T d2aeua1 152 NFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELVDKIYIEG 224 (366)
T ss_dssp HHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-cEEEEEecCccccccccccCCCHhhc----CceEEEecccccc--cccceeEEEecHHHHHHHHHHH
Confidence 899999999999 99999999999877654433333222 3448899999976 6899999999999999999988
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH----HHHHHHHHHhccCCCC--eecCCCceEEEeeeccCccCC
Q 012124 328 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR----ERRDFLVKSFGELEGV--KMSEPQGAFYLFIDFSTYYGS 401 (470)
Q Consensus 328 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~g~--~~~~~~~g~~~~~~~~~~~~~ 401 (470)
....++++++.|.++...|+.-. ...+++..+..+ ...+.+.......++. ....+.+.+++|...+.....
T Consensus 225 ~~~g~~~~~~~~~a~~~aL~tl~--~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (366)
T d2aeua1 225 TKFGLEAQPPLLAGIYRALKNFN--LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI 302 (366)
T ss_dssp HTTTCBCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH
T ss_pred hcccccCCHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee
Confidence 88888899999999888886421 112222222111 1223333333333333 223345566677665432100
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-CCCCcEEEEeec
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRISYAA 445 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-~~~~~iRls~~~ 445 (470)
...+..+++.+|++++||.+.||..| +.++++|||++.
T Consensus 303 ------~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRis~~~ 341 (366)
T d2aeua1 303 ------NIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTS 341 (366)
T ss_dssp ------HHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTS
T ss_pred ------cccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEEeccc
Confidence 00135678889999999999999887 356799999986
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.95 E-value=8.8e-27 Score=227.69 Aligned_cols=331 Identities=19% Similarity=0.178 Sum_probs=225.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHc----CCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHH
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 172 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~ 172 (470)
+.|..+... +.|..+++++.+.+.. +...+.......++.+.+.+.+.+.+| +++++|++|+|+++++++++.
T Consensus 9 ~yld~~~~~-~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~i~~~~g~t~a~~~~~~ 85 (381)
T d1elua_ 9 TYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN--VDPNTITITDNVTTGCDIVLW 85 (381)
T ss_dssp EECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT--SCGGGEEEESSHHHHHHHHHH
T ss_pred EEeeCCccc-CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC--CCcccEEEECChHHHhhhcch
Confidence 556655444 3466777777776643 222222222333444444444444455 578899999999999999999
Q ss_pred Hh-cCCCCeEEEcCCCCCChHH----HHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHH
Q 012124 173 AV-CSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 173 ~l-~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
++ .++||+|++.++.|++... ..+..|++++.+|.+.......+.+.++++++++++++++++++||||..+|
T Consensus 86 ~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~-- 163 (381)
T d1elua_ 86 GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP-- 163 (381)
T ss_dssp HSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC--
T ss_pred hhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccch--
Confidence 88 6899999999999986554 4455799999999875544333467788889999999999999999999999
Q ss_pred HHHHHHHHHHhC---CCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 248 LLDEIARIVAKH---PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 248 ~~~~l~~~~~~~---~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+++|.++|+++ .++++++|.+++.. ..+..+.. .+..+++.|+.|.++ ...++|++++.++..+.+.
T Consensus 164 -~~~I~~l~~~~~~~~~~~~~vD~~~~~g----~~~~~~~~----~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~~ 233 (381)
T d1elua_ 164 -LAEIMAVCRRHQGNYPVRVLVDGAQSAG----SLPLDFSR----LEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEIN 233 (381)
T ss_dssp -HHHHHHHHHHCCSSSCCEEEEECTTTBT----TBCCCTTT----SCCSEEEEESSSTTC-CCTTCEEEEECTTTGGGCC
T ss_pred -hhHHHHHHhhcccccccccccccccccc----cccccccc----ccccccccccccccc-ccchhhHHHhhHHHHHhcC
Confidence 66777777774 16899999998752 22222222 245589999999996 4456899888777665432
Q ss_pred HH----------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 325 KI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 325 ~~----------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
.. ......+++.....++.++++.-.. ....+...++..++++++.+.|++++|+++
T Consensus 234 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 312 (381)
T d1elua_ 234 PTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHC 312 (381)
T ss_dssp CCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEe
Confidence 10 1112223455555555555542100 111344557778888999999999989877
Q ss_pred cC---CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHH
Q 012124 383 SE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 383 ~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l 457 (470)
.. +.+++ +++.+++.. +.+.+.+.|.+ .||.+.. ++.++++|+|++. +.+|++.+++.|
T Consensus 313 ~~~~~~~~~~-vsf~~~~~~-----------~~~~i~~~L~~-~gi~v~~---~~~~~~lRis~~~~nt~edid~ll~~l 376 (381)
T d1elua_ 313 LATSAPQAGL-VSFTVDSPL-----------GHRAIVQKLEE-QRIYLRT---IADPDCIRACCHYITDEEEINHLLARL 376 (381)
T ss_dssp SCSSCCSSSE-EEEEECSSS-----------CHHHHHHHHHH-TTEECEE---ETTTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCCCccccE-EEEEcCCCC-----------CHHHHHHHHHh-CCcEEEe---cCCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 63 34555 555665432 56778777655 5998754 3457899999986 889999999988
Q ss_pred HH
Q 012124 458 KK 459 (470)
Q Consensus 458 ~~ 459 (470)
++
T Consensus 377 ~e 378 (381)
T d1elua_ 377 AD 378 (381)
T ss_dssp TT
T ss_pred Hh
Confidence 65
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.9e-27 Score=228.44 Aligned_cols=321 Identities=16% Similarity=0.161 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCC-cC-----------cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPN-AG-----------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~-~g-----------~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
++++.+++++.+.+.+.. .|+++ .+ +.++|+.+++++ | +++++|++|+|+++++..++.++
T Consensus 13 p~~~~v~ea~~~~~~~~~-~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l----g--~~~~~I~~~~~~t~~l~~~~~~~ 85 (391)
T d1p3wa_ 13 PVDPRVAEKMMQFMTMDG-TFGNPASRSHRFGWQAEEAVDIARNQIADLV----G--ADPREIVFTSGATESDNLAIKGA 85 (391)
T ss_dssp CCCHHHHHHHHTTTSTTS-CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcc-ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc----C--CCCCcEEEECCHHHHHHHHHhhh
Confidence 457889999988876533 33322 11 224566677665 4 57899999999999999888765
Q ss_pred ----cCCCCeEEEcCCCCCChHHHH---HHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHH
Q 012124 175 ----CSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 247 (470)
Q Consensus 175 ----~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~ 247 (470)
.++||+|++.++.|+++...+ +..|+++..+|.+.+ +.+|++.++++++++|++|++++++||||..+|
T Consensus 86 ~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~-- 161 (391)
T d1p3wa_ 86 ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN--GIIDLKELEAAMRDDTILVSIMHVNNEIGVVQD-- 161 (391)
T ss_dssp HHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT--SCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCC--
T ss_pred hhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC--CeEcHHHHHHhCCCCcEEEEEECCCCCCeeECC--
Confidence 479999999999999876554 456999999998743 358999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHH-
Q 012124 248 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI- 326 (470)
Q Consensus 248 ~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~- 326 (470)
+++|+++|+++ |+++++|.++.... .+..+..+ +..+++.|+.|.+|.+| +|+++.+++........
T Consensus 162 -~~~I~~~~~~~-~~~~ivD~~~~~g~----~~~d~~~~----~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~ 229 (391)
T d1p3wa_ 162 -IAAIGEMCRAR-GIIYHVDATQSVGK----LPIDLSQL----KVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQM 229 (391)
T ss_dssp -HHHHHHHHHHH-TCEEEEECTTTBTT----BCCCTTTS----CCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSS
T ss_pred -HHHHHHHhccC-CcEEEEeeccccCC----ccccchhc----cccccccccccccCCCc--eEEEEEecchhcccCCcc
Confidence 77899999999 99999999987532 22233322 34478889999987555 67777766543332211
Q ss_pred ------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC--C-ceEEEeeeccC
Q 012124 327 ------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--Q-GAFYLFIDFST 397 (470)
Q Consensus 327 ------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~--~-~g~~~~~~~~~ 397 (470)
........+.....++...+.. ..+......+++++.++.+.+.|.++++..+... . ....+.+.++.
T Consensus 230 ~gg~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T d1p3wa_ 230 HGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY 306 (391)
T ss_dssp CSSCTTTTTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETT
T ss_pred cCCccccCcccCcchhhhhhhhhhhhhH---HHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCC
Confidence 1122233344444444444433 1334445556677788888888888755444211 1 12223344544
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHH
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVER 456 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~ 456 (470)
. +...+...| .++.+..|..+.. .++||+|++. +++|++.+++.
T Consensus 307 ~------------~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~ 371 (391)
T d1p3wa_ 307 V------------EGESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIEL 371 (391)
T ss_dssp S------------CHHHHHHHT---TTEECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHH
T ss_pred C------------ChHHHHHHh---CCCEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHH
Confidence 3 666776655 2677777654321 1469999997 89999999999
Q ss_pred HHHHHHhhCCCC
Q 012124 457 IKKGLLTLRPGV 468 (470)
Q Consensus 457 l~~~l~~~~~~~ 468 (470)
|++++++++..-
T Consensus 372 l~~~l~~lr~~~ 383 (391)
T d1p3wa_ 372 VRKSIGRLRDLS 383 (391)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhC
Confidence 999999886543
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.94 E-value=6.2e-27 Score=227.20 Aligned_cols=297 Identities=15% Similarity=0.183 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCc
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 214 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 214 (470)
.+++.+|+++ | .|++++|+|+++|+.+++.++++|||+|++++++|++....++..|++++.+|++..+++.
T Consensus 51 ~~~~~~A~~~----g----~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~ 122 (364)
T d2e7ja1 51 FIHNQLPKFL----G----CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYA 122 (364)
T ss_dssp HHHTHHHHHT----T----SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCC
T ss_pred HHHHHHHHHh----C----cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeeccccccc
Confidence 3555566553 4 3689999999999999999999999999999999999888899999999999998777788
Q ss_pred cCHHhHhhhccC-----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 215 LDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 215 ~d~~~l~~~l~~-----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
+|++.+++.+++ ++++|++++|+||||...+ +++|+++|++| |+++|+|++|+...+ ...+..+
T Consensus 123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~-~i~livD~a~~~g~~----~~~~~~~--- 191 (364)
T d2e7ja1 123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGRM----PVSLKEI--- 191 (364)
T ss_dssp CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTTB----CCCHHHH---
T ss_pred cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccc-cchhhccccchhhhh----hhccccc---
Confidence 999999999853 3457888999999999999 88999999999 999999999975322 2233332
Q ss_pred CCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhh--------ccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--------FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
+..++++|++|.++.+| ++||+++++++++.+...... ...........++.+.+.. ..++++...+
T Consensus 192 -g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~ 266 (364)
T d2e7ja1 192 -GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRERIKRWDE 266 (364)
T ss_dssp -TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHHHGGGHHH
T ss_pred -ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH---HHHHHHHHHH
Confidence 23488999999998555 799999998877655322111 1111222333333444432 1233333333
Q ss_pred HHHHHHHHHHHHhccCCCCeecC--CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcE
Q 012124 362 AFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCI 439 (470)
Q Consensus 362 ~~~~~~~~l~~~L~~~~g~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~i 439 (470)
.+ ++++.+.+.|.++ |+.... +......++..+.......... .....+...|.. .++... ..+....+
T Consensus 267 ~~-~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~~~~---~~g~~~~~ 337 (364)
T d2e7ja1 267 EV-EKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAEVLYEISKKAK---GGRFFLYRELKS-RKIHGI---KPGLTRYF 337 (364)
T ss_dssp HH-HHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECHHHHHHHHHSS---SGGGHHHHHHHH-TTEECS---CTTCCSEE
T ss_pred HH-HHHHHHHHHHHHc-CCeecCCCCCCcceEEEeccchHHHHHHhh---ccchHHHHHHHh-cCCcee---cCCCcceE
Confidence 33 3455677777776 554432 2222222333321100000000 012223333443 466422 22334567
Q ss_pred EEEeec-CHHHHHHHHHHHHHHHHhh
Q 012124 440 RISYAA-SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 440 Rls~~~-~~~~i~~~l~~l~~~l~~~ 464 (470)
|++... ++++|+.++++|+++++++
T Consensus 338 ~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 338 KLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 877544 8999999999999999876
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.2e-24 Score=212.62 Aligned_cols=335 Identities=16% Similarity=0.113 Sum_probs=240.1
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcCCCCCCCC-------cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~y~~~-------~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+.++||++++ ..+..+|.+++++.+++.+...++..+ .-..+|.+.+++++ | .+.+++++++
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~----g----~e~al~~~SG 114 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G----MEDAILYSSC 114 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T----CSEEEEESCH
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh----c----CCceEEecch
Confidence 577889998876 456668999999999987633333222 22335666666664 3 4689999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc---c---CCceEEEEcCCC
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL---T---EKSRLLILCSPS 237 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l---~---~~~~~i~l~~p~ 237 (470)
.++...++.++.+++|.|+++.-.|.++...+...++++..++.. |.+.+++.+ + ....+|++....
T Consensus 115 ~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~egv~ 187 (401)
T d1fc4a_ 115 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred hhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 999999999999999999999999999999999999999888752 555555544 2 233455556666
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
+..|...+ ++++.++|++| |+++|+||+++.+.++.........+....+..++++||+|.++ |...|++.++.
T Consensus 188 s~~G~~~~---L~~l~~L~~~~-~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g~~ 261 (401)
T d1fc4a_ 188 SMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAARK 261 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEECH
T ss_pred CCCCchhh---hhHHHHHHhhc-CcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccCCH
Confidence 77888888 88899999999 99999999999988875443332223222456789999999984 34459999999
Q ss_pred HHHHHHHHHhhh--ccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeec
Q 012124 318 HFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 395 (470)
Q Consensus 318 ~~~~~l~~~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~ 395 (470)
++++.+...... ++...++....++...++. ....++.+++++++.+++.+.+.+. |+.+....+.+ +.+.+
T Consensus 262 ~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~~pI-v~v~~ 335 (401)
T d1fc4a_ 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLAGADHAI-IPVML 335 (401)
T ss_dssp HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCSSSSE-EEEEE
T ss_pred HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHHHhhhccc-CCccCCCCCCE-EEEEE
Confidence 999988754332 3344555555555555553 2223566788888888888888877 66665555554 33444
Q ss_pred cCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHHHhhC
Q 012124 396 STYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~ 465 (470)
.+.. ...++.++|+++ ||.+.+-.+... ...+|++++. ++++|+++++.|+++.+++.
T Consensus 336 ~~~~-----------~a~~~~~~L~~~-Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 336 GDAV-----------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG 398 (401)
T ss_dssp ECHH-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHH-----------HHHHHHHHHHHC-CceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4321 455788888776 998876332221 2469999986 99999999999999998864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.93 E-value=1.6e-24 Score=209.50 Aligned_cols=336 Identities=15% Similarity=0.124 Sum_probs=235.9
Q ss_pred CCCeEEccCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 93 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 93 ~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~~~~y~---~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
++++++|++++ ..+..++.++++..+++.+.-.+.+ ...|..++.+.+.+.+.+.+| .+..++.+++..+..
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g----~e~all~~sG~~An~ 119 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ----KEAALVFSSAYNAND 119 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT----CSEEEEESCHHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC----CCceeeeecchHHHH
Confidence 34679999887 5666689999999998876211111 224444444444444444444 356777777777777
Q ss_pred HHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhc---cC-CceEEEEcCCCCCccc
Q 012124 169 QAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL---TE-KSRLLILCSPSNPTGS 242 (470)
Q Consensus 169 ~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l---~~-~~~~i~l~~p~nPtG~ 242 (470)
.++.++ ..++|.|+.+.-.+.+....++..+++++.++.+ |++.+++.+ .+ +.+.|++...-+.+|.
T Consensus 120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd 192 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYSMDGD 192 (396)
T ss_dssp HHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCC
T ss_pred HHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEEEEeeccCccc
Confidence 777777 4688999999999989999999999999888753 566665555 22 4456666777889999
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHH
Q 012124 243 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 322 (470)
Q Consensus 243 ~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~ 322 (470)
..| +++|+++|++| ++++++||+|+...++..+......+....+..|+++||||.+|..| ||+.+++++++.
T Consensus 193 ~ap---l~~l~~L~~~y-~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~ 265 (396)
T d2bwna1 193 FGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDA 265 (396)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHH
T ss_pred ccc---cHhHHHHhhhh-cceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhHHHHHH
Confidence 999 88899999999 99999999999888875554444333333466799999999998777 999999999999
Q ss_pred HHHHhhhccCC--CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccC
Q 012124 323 CNKIQSQFTSG--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 400 (470)
Q Consensus 323 l~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~ 400 (470)
+......+.++ .++....++.+.++... .+..++.+..++.+.+++.+.|.+. |+.+....+.+ +.+.+.+..
T Consensus 266 l~~~~~~~ifStalpp~~~aa~~~al~i~~--~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~spI-vpv~ig~~~- 340 (396)
T d2bwna1 266 VRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSHI-VPVVIGDPV- 340 (396)
T ss_dssp HHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSC-EEEECCCHH-
T ss_pred HHhhcchhhhcccCcHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCCCE-EEEEeCCHH-
Confidence 98665544333 34444444444444211 2334556777778888888888876 66665444433 334443321
Q ss_pred CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 401 SEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
...+++++|++++||.+.+..+... ...+|++++. ++++|+++++.|++++
T Consensus 341 ----------~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 341 ----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp ----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 4567888888766998877543322 3579999987 9999999999998763
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.9e-24 Score=209.90 Aligned_cols=329 Identities=12% Similarity=0.079 Sum_probs=237.2
Q ss_pred cCCCeEEccCCC-CCCCChHHHHHHHHHHHHcC-C------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecCh
Q 012124 92 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG-F------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 163 (470)
Q Consensus 92 ~~~~~i~l~~g~-~~~~~~~~~~~a~~~~~~~~-~------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~ 163 (470)
+|+++++|++++ ..+..+|.+++++.+++.+- . ..++...-+.+|.+.|++++ | .+..++.+++
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g----~e~al~~~SG 107 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G----YSRALLFISG 107 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T----CSEEEEESCH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----C----CCceEEeccc
Confidence 466789999876 45556889999999988762 1 11222333456666666665 3 3578888888
Q ss_pred HHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhcc---CCceEEEEcCCCCCc
Q 012124 164 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPT 240 (470)
Q Consensus 164 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~i~l~~p~nPt 240 (470)
..+...++.++..++|.|+++...|..+....+..+.+++.++. .|++.+++.+. ++.++|++....+++
T Consensus 108 ~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e~v~s~~ 180 (383)
T d1bs0a_ 108 FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFSMD 180 (383)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred chhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEecCCCCCC
Confidence 88999999999999999999999999999999999999998885 37788877773 356677788889999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|.+.+ +++|.++|++| |+++|+||+|+...++....... ...+ ....+.+.||+|.+|.+| |++.++.+++
T Consensus 181 G~i~p---l~~l~~l~~~~-~~~livDeah~~gv~G~~g~G~~-~~~~-~~~~~~~~t~~ka~g~~G---g~v~~~~~~~ 251 (383)
T d1bs0a_ 181 GDSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSC-WLQK-VKPELLVVTFGKGFGVSG---AAVLCSSTVA 251 (383)
T ss_dssp CCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHH-HHTT-CCCSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred Ccccc---hhHHHHHHHhc-CcEEEeecceeeeecCCcccchH-HHcC-Cccccccccccccccccc---cccccchhHH
Confidence 99999 77888899999 99999999999887764433222 2222 244567789999998776 9999999999
Q ss_pred HHHHHHhhhcc--CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCc
Q 012124 321 AACNKIQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 398 (470)
Q Consensus 321 ~~l~~~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~ 398 (470)
+.++.....+. ...++....++.+.++.- .....+..+++++++..++.+.|.++ |+.+....+.+ +.+.+++.
T Consensus 252 ~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~--~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~I-i~v~~g~~ 327 (383)
T d1bs0a_ 252 DYLLQFARHLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLAALITRFRAGVQDL-PFTLADSCSAI-QPLIVGDN 327 (383)
T ss_dssp HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCCSSB-CCEEEESH
T ss_pred HHHHhhchhhhhcccccchHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCE-EEEEECCH
Confidence 98876543333 233444434444444321 02334566777888899999999888 77765544444 33444332
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC---CCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGD---DTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~---~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
. .+.++.+.|+++ ||.+.+..+... ...+|++++. ++++|+++++.|..+
T Consensus 328 ~-----------~a~~~~~~L~~~-Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 328 S-----------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp H-----------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHC-CceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 1 456888888876 999877443221 2469999987 999999999988753
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.3e-23 Score=204.56 Aligned_cols=332 Identities=15% Similarity=0.163 Sum_probs=238.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC---C------cCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---N------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 165 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~---~------~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~ 165 (470)
+++.|..+.-. +.|+.+.+++.+.+.+...+... . .-..+.|+.+++++ |. ..+++|++|+|+++
T Consensus 22 ~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l----~~-~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 22 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NA-RSAEELVFVRGTTE 95 (405)
T ss_dssp ECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TC-SCGGGEEEESSHHH
T ss_pred CeEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc----CC-CCcccccccCcHHH
Confidence 44666555444 45888999988887653221100 0 11234455555554 42 24589999999999
Q ss_pred HHHHHHHH----hcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCC
Q 012124 166 SILQAVLA----VCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 237 (470)
Q Consensus 166 al~~~~~~----l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~ 237 (470)
++..++.. ...+||+|++.+-.|++.... .+..|++++.+|+++++ .+|++.+++++++++++++++..+
T Consensus 96 ~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g--~~~~~~~~~~i~~~t~lv~~~~v~ 173 (405)
T d1jf9a_ 96 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG--TLQLETLPTLFDEKTRLLAITHVS 173 (405)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS--CBCGGGHHHHCCTTEEEEEEESBC
T ss_pred HHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC--cCCHHHHHHhccCCcEEEEEecCC
Confidence 99988876 358999999999999985544 45679999999998654 489999999999999999999999
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCH
Q 012124 238 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 317 (470)
Q Consensus 238 nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~ 317 (470)
|.||..+| +++|.++|+++ |+++++|.+++. +.....+..+ +-.+++.|+.|.+|.+| +|+++.++
T Consensus 174 ~~tG~~~p---i~~i~~~~~~~-g~~~~vD~~q~~----g~~~id~~~~----~~D~~~~s~hK~~Gp~G--~g~l~v~~ 239 (405)
T d1jf9a_ 174 NVLGTENP---LAEMITLAHQH-GAKVLVDGAQAV----MHHPVDVQAL----DCDFYVFSGHKLYGPTG--IGILYVKE 239 (405)
T ss_dssp TTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEEEGGGTTSCSS--CEEEEECH
T ss_pred CcccccCc---hHHhhhHHHHc-CCeeecccceec----cccccchhhc----CCceeeccccccccCCC--ceeeeech
Confidence 99999999 88899999999 999999999875 2223333333 34499999999987555 79999998
Q ss_pred HHHHHHHH----------------------HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 012124 318 HFVAACNK----------------------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 375 (470)
Q Consensus 318 ~~~~~l~~----------------------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 375 (470)
++.+.+.. ..+....+.+.....++..+++.- .+...+.+.++.....+.+.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~L~~~~~~~l~ 317 (405)
T d1jf9a_ 240 ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYALSQLE 317 (405)
T ss_dssp HHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHhhhh
Confidence 87654321 111223345666666666666531 022356667777777888888888
Q ss_pred cCCCCeecCCC--ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC--------CCCCcEEEEeec
Q 012124 376 ELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF--------GDDTCIRISYAA 445 (470)
Q Consensus 376 ~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f--------~~~~~iRls~~~ 445 (470)
.++.+....|. .+. +.+.++.. +..++...| ++.||.+..|+.+ +.++.+|+|++.
T Consensus 318 ~~~~~~~~~~~~r~~i-vsf~~~~~------------~~~~~~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ 383 (405)
T d1jf9a_ 318 SVPDLTLYGPQNRLGV-IAFNLGKH------------HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAM 383 (405)
T ss_dssp TSTTEEEESCTTCCSE-EEEEETTC------------CHHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECCT
T ss_pred cCCcccccCCcCcCcE-EEEEcCCC------------CHHHHHHHH-HHCCcEEEccchhhhhHHHhcCCCCEEEEECCC
Confidence 88666555443 344 44567653 677777766 4569999988764 336789999997
Q ss_pred --CHHHHHHHHHHHHHHHHhh
Q 012124 446 --SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 446 --~~~~i~~~l~~l~~~l~~~ 464 (470)
+++||+.+++.|+++.+-+
T Consensus 384 ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 384 YNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 8899999999999987744
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=4e-24 Score=204.49 Aligned_cols=330 Identities=17% Similarity=0.163 Sum_probs=223.3
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
+|||....-..+ +|++++|+.++. .+...|++.+...+|++.+++++ | .+++++++|+++|+.++++++.
T Consensus 1 ~~~~~~~~~t~p-~p~v~~A~~~a~-~g~~~yg~~p~~~~le~~lA~~~----G----~~~~~~~~sGt~A~~~al~a~~ 70 (343)
T d1m6sa_ 1 MIDLRSDTVTKP-TEEMRKAMAQAE-VGDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMAHT 70 (343)
T ss_dssp CEECSCGGGCCC-CHHHHHHHHTCC-CCCGGGTCCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHHC
T ss_pred CcccccccCCCC-CHHHHHHHHhhh-cCCcccCCCHHHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHHHh
Confidence 367766654433 467888887653 24556888888889999999885 4 3578999999999999999999
Q ss_pred CCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccC------CceEEE-EcCCCCCcccCCC
Q 012124 176 SPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLI-LCSPSNPTGSVYP 245 (470)
Q Consensus 176 ~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~i~-l~~p~nPtG~~~s 245 (470)
++||.+++..+.+..+. ......+..+..++.+ ....|++.+++.+.. ++..++ .+.++|++|.+++
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (343)
T d1m6sa_ 71 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVP 147 (343)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCC
T ss_pred ccCCceeccccccceeeecccccccccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecC
Confidence 99999999998775443 3455667777777654 234799999988864 344444 4566889999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHH
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 325 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~ 325 (470)
.+++++|+++|+++ ++++++|+++..+........... .. ......+.+.+| +..|.+.|+++...+.+.....
T Consensus 148 ~~~l~~i~~~~~~~-g~~~~~D~a~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~ 221 (343)
T d1m6sa_ 148 LENIKEICTIAKEH-GINVHIDGARIFNASIASGVPVKE-YA--GYADSVMFCLSK--GLCAPVGSVVVGDRDFIERARK 221 (343)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCCCHHH-HH--HTCSEEEEESSS--TTCCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CeEEEeccccccccccccccchhh-hc--cccccccccccc--cccccccccccccHHHHhhhHh
Confidence 99999999999999 999999999987544321111111 11 112233333333 3456678999999988887776
Q ss_pred HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccC
Q 012124 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 405 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 405 (470)
.......+.+.....++......... ..+.+. +.++...+.+.+.++.+.....+....++|+++++.-
T Consensus 222 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 290 (343)
T d1m6sa_ 222 ARKMLGGGMRQAGVLAAAGIIALTKM-VDRLKE----DHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLK------ 290 (343)
T ss_dssp HHHHHTCCCSSTHHHHHHHHHHHHHS-STTHHH----HHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSS------
T ss_pred hCcccccccchhHHHHHhhhhhhhhh-HHHHHH----HHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCc------
Confidence 66555444444444333333221111 222222 2333344444444443444444555566888887531
Q ss_pred CCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 406 FGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 406 ~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
.+..++++.|.++ ||.+.|.. ++++|++++. ++|+|+++++.|+++++++
T Consensus 291 ----~~a~~l~~~L~~~-Gi~v~~~~----~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 291 ----VNAHGFIEALRNS-GVLANAVS----DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ----SCHHHHHHHHHHH-TEECEEEE----TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHC-CCEEecCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1678999998876 99998753 5689999875 8999999999999999986
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.91 E-value=1.2e-21 Score=192.28 Aligned_cols=337 Identities=16% Similarity=0.182 Sum_probs=238.4
Q ss_pred CCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CcCc--HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 94 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGT--LELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 94 ~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~---~~g~--~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+++|.|..+.-. +.|+.+++++.+.+.+...+... ..|. .++.+...+.+.+..|.+ .++.|+++++++++++
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~-~~~~i~~~~~tt~~~n 98 (408)
T d1t3ia_ 21 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-SPREIVYTRNATEAIN 98 (408)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-CGGGEEEESSHHHHHH
T ss_pred CCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CcccEEeecchHHHHH
Confidence 456777766655 36888899998887764221101 1111 123333333333334532 3578999999999999
Q ss_pred HHHHH----hcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCc
Q 012124 169 QAVLA----VCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 240 (470)
Q Consensus 169 ~~~~~----l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPt 240 (470)
+++.. -.++||+|++.+-.|++.... .+..|.++..+|.+.++ ..+.+.+++++++++++|.++..+|-|
T Consensus 99 ~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~l~~~~~~~t~lv~i~~~~~~t 176 (408)
T d1t3ia_ 99 LVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQE--SFDLEHFKTLLSEKTKLVTVVHISNTL 176 (408)
T ss_dssp HHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTS--SBCHHHHHHHCCTTEEEEEEESBCTTT
T ss_pred HHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccc--cccHHHhhhccCCCceEEEEecccccc
Confidence 88766 357899999999999876543 45579999999986543 479999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 241 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 241 G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
|..++ +++|.++|+++ |+++++|.+++. +..+..+..+. -.+++.|..|.+|.+| +|+++..++..
T Consensus 177 G~~~p---~~~i~~~~~~~-g~~~ivDa~q~~----g~~~id~~~~~----~D~~~~s~hK~~gp~G--~g~l~v~~~~~ 242 (408)
T d1t3ia_ 177 GCVNP---AEEIAQLAHQA-GAKVLVDACQSA----PHYPLDVQLID----CDWLVASGHKMCAPTG--IGFLYGKEEIL 242 (408)
T ss_dssp CBBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHHT----CSEEEEEGGGTTSCTT--CEEEEECHHHH
T ss_pred cccCc---HHHHhhhhhcc-Cceeeeccceec----ccccccccccC----CceEEeccccccCCCC--ccccccchhhh
Confidence 99999 78889999999 999999999875 33333444433 3489999999876344 89999998876
Q ss_pred HHHHHH---------------------hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 321 AACNKI---------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 321 ~~l~~~---------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
...... .+....+.+.....++..+++.- .+...+++.++..+..+++.+.+.+.++
T Consensus 243 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~~~~~~~ 320 (408)
T d1t3ia_ 243 EAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQ 320 (408)
T ss_dssp HHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHhHHhhhhccCcc
Confidence 543210 11123345666666666666531 0223567777778888889999988877
Q ss_pred CeecCCC------ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC--------CCCcEEEEeec
Q 012124 380 VKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG--------DDTCIRISYAA 445 (470)
Q Consensus 380 ~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~--------~~~~iRls~~~ 445 (470)
+.+..+. +++ +.+.++.. +..++.+.| +++||.+..|..+. .++.+|+|++.
T Consensus 321 ~~~~~~~~~~~~~~~i-v~f~~~~~------------~~~~v~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ 386 (408)
T d1t3ia_ 321 LRLYGPNPKHGDRAAL-ASFNVAGL------------HASDVATMV-DQDGIAIRSGHHCTQPLHRLFDASGSARASLYF 386 (408)
T ss_dssp EEEESCCGGGSCBCSE-EEEEETTB------------CHHHHHHHH-HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCT
T ss_pred ccccCCCccccCcceE-EEEEeCCC------------CHHHHHHHH-hhCCcEEecCcccccHHHHhhcCCccEEEECCC
Confidence 7665332 233 45566654 677888776 45699999887652 35789999997
Q ss_pred --CHHHHHHHHHHHHHHHHhh
Q 012124 446 --SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 446 --~~~~i~~~l~~l~~~l~~~ 464 (470)
+++|++.+++.|+++++..
T Consensus 387 ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 387 YNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998753
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.3e-21 Score=190.17 Aligned_cols=318 Identities=16% Similarity=0.142 Sum_probs=205.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcC-----------cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHH--
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAG-----------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA-- 173 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g-----------~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~-- 173 (470)
++|+.+.+++.+.+.+. |+.+.+ +.+.|+.+++++ | +++++|++++|+++++..++..
T Consensus 12 ~~p~~v~ea~~~~~~~~---~~np~~~~~~~~~~~~~~~~aR~~ia~l~----~--~~~~~i~~~~~~T~~l~~~~~~~~ 82 (376)
T d1eg5a_ 12 RVDDRVLEEMIVFYREK---YGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESINWILKTVA 82 (376)
T ss_dssp CCCHHHHHHHHHHHHTC---CCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---CCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCcEEEECCHHHHHHhhhhccc
Confidence 34788899998888753 222211 223466666665 4 6889999999999999998864
Q ss_pred --hcCCCCeEEEcCCCCCChHHH---HHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHH
Q 012124 174 --VCSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 174 --l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
...+|+.|++....|+.+... ++..|++++.+|++.+ +.+|++.+++++++++++++++.++|+||..++.++
T Consensus 83 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~--~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 83 ETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSR--GVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTT--SCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred ccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCC--CeECHHHHHHhcCCCceEEEEECCccccceeeeehh
Confidence 357788998888888776654 4567999999999754 459999999999999999999999999999999555
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH---HH
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC---NK 325 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l---~~ 325 (470)
+.++++. +.. ++++++|.+++. +..+..+.. .+..++++|++|.+|.+|..+.|+.-...+...+ ..
T Consensus 161 i~~~~~~-~~~-~~~~~vD~~q~~----g~~~~d~~~----~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~~ 230 (376)
T d1eg5a_ 161 VTRIVKK-KNK-ETLVHVDAVQTI----GKIPFSLEK----LEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQ 230 (376)
T ss_dssp HHHHHHH-HCT-TCEEEEECTTTT----TTSCCCCTT----TCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCT
T ss_pred hhhhhhh-ccc-CceeEEEeeecc----ccccccccc----cCccceecccceeecCCCceeEEeccCcccCCcccCCCC
Confidence 5554443 344 789999998875 222233332 2445899999999987887666653221110000 00
Q ss_pred HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec---CCCceEEEeeeccCccCCc
Q 012124 326 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS---EPQGAFYLFIDFSTYYGSE 402 (470)
Q Consensus 326 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~---~~~~g~~~~~~~~~~~~~~ 402 (470)
.........+............. ..................+.+.|......... ...... +-+.++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 302 (376)
T d1eg5a_ 231 ERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNT-LSVSFPNI---- 302 (376)
T ss_dssp TTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTE-EEEECTTC----
T ss_pred cccccCCcccchhhhhHHHHhhc---cccchhhhhhhhhhhhhhhccccccccccccccccccccce-eeeccCCC----
Confidence 11122223344554444444432 12223344455555666677777665222221 111222 23345443
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCC-------------------CCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDAFGD-------------------DTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~-------------------~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
+...+...| +++||.+++|..+.. .+++|+|++. +++|++.+++.|++++
T Consensus 303 --------~~~~~~~~L-~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv 373 (376)
T d1eg5a_ 303 --------RGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (376)
T ss_dssp --------CHHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHH-hhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 677777765 556999988865421 1369999986 8999999999999988
Q ss_pred H
Q 012124 462 L 462 (470)
Q Consensus 462 ~ 462 (470)
+
T Consensus 374 ~ 374 (376)
T d1eg5a_ 374 S 374 (376)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=6e-21 Score=181.95 Aligned_cols=330 Identities=10% Similarity=0.071 Sum_probs=214.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
+.++|++.++. +.+|++++|+.++.......|++.....++|+.+++++ |. +..+++|+|+++++..++..+
T Consensus 3 ~~~~f~s~n~~-g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~----g~---~~~v~f~~sGt~An~~a~~~~ 74 (345)
T d1v72a1 3 PALGFSSDNIA-GASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIF----ER---DVEVFLVPTGTAANALCLSAM 74 (345)
T ss_dssp CCCBCSCGGGC-CCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHH----TS---CCEEEEESCHHHHHHHHHHTS
T ss_pred CCcCcCCCCCC-CCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHH----CC---CcEEEECCchHHHHHHHHHHH
Confidence 56888876644 45778999998876555566767777777888888775 42 357999999999999999999
Q ss_pred cCCCCeEEEcCCCCCChH---HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC------ceE-EEEcCCCCCcccCC
Q 012124 175 CSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRL-LILCSPSNPTGSVY 244 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~-i~l~~p~nPtG~~~ 244 (470)
+.+++.+++....+.... ......+..+..++... +..++++.+++.+.+. +.. ++...+.|++|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
T d1v72a1 75 TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIY 152 (345)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCC
T ss_pred HhcCCccccccccceeeechhhHHHhcCcccccccccc--cccccHHHhhhhhcccccccccccceeeeeeccccccccc
Confidence 999988887766544332 34455677776666543 3448999999988642 333 34567788999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
+.++++++.++|++| |++++.|+++....+.... ..+..............+..|... ...+. .+...........
T Consensus 153 ~~~~~~~i~~~~~~~-~~~~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 228 (345)
T d1v72a1 153 TLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLG-CSPAEMTWKAGVDALSFGATKNGV-LAAEA-IVLFNTSLATEMS 228 (345)
T ss_dssp CHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHT-CCTTTTTGGGTCCEEEECCGGGTC-SSCEE-EEESSGGGHHHHH
T ss_pred cchhhhhHHHHHHhc-Cceeeecccccceeccccc-cCHHHhhccccccccccCcccccc-ccccc-cccchhhhhhhcc
Confidence 999999999999999 9999999998764432211 111111111122233333334332 22222 2333333333333
Q ss_pred HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCccc
Q 012124 325 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 404 (470)
Q Consensus 325 ~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 404 (470)
..........+.....++...... ......+......++...+.+.+.+++|+.+..|..+.++|+++++
T Consensus 229 ~~~~~~~~~~~~~~~aa~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~------- 298 (345)
T d1v72a1 229 YRRKRAGHLSSKMRFLSAQIDAYL---TDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS------- 298 (345)
T ss_dssp HHHHHTTCCCSSTHHHHHHHHHHT---STTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH-------
T ss_pred ccccccccccchhhHHhhhhHHHH---HHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCH-------
Confidence 322233333333333333333322 1334455556666777788888999989988877666668888752
Q ss_pred CCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 405 GFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 405 ~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
+++++|+++ ||.+.++. ..++.+|++++. ++|+|+.+++.|+++
T Consensus 299 ---------~~~~~L~~~-gi~v~~~~--~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 299 ---------AMIDALLKA-GFGFYHDR--WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ---------HHHHHHHHT-TCBCBCSS--SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHc-CCCccccC--CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456778776 88775542 236789999885 899999999998864
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.6e-21 Score=185.15 Aligned_cols=333 Identities=16% Similarity=0.154 Sum_probs=226.9
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
+-|+.| +...++.+++++.. ...+. -.....++.+.+.+.+++.+|.+ ++..|++|.|++++++.++..++.
T Consensus 21 ~l~~pG--P~~~~~~Vl~am~~----~~i~H-Rs~~f~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i~~l~~ 92 (388)
T d1h0ca_ 21 LLLGPG--PSNLPPRIMAAGGL----QMIGS-MSKDMYQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNVLE 92 (388)
T ss_dssp EECSSS--CCCCCHHHHHHHTC----CCCCT-TSHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHCC
T ss_pred ccccCC--CCCCCHHHHHHhCc----CCCCC-CCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHhhc
Confidence 335544 22347777777642 22221 23344566666667777777753 334689999999999999999999
Q ss_pred CCCeEEEcCCCCCChHH--HHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHHH
Q 012124 177 PGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIA 253 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l~ 253 (470)
+||.+++...++.+... .....+..+..+..+. +..+|.+.+++.+ +.++++++++..+|.||...+ +++|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~ 167 (388)
T d1h0ca_ 93 PGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDP--GGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFG 167 (388)
T ss_dssp SSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHH
T ss_pred cCCceeeecccceeeeeccccccccccccccccCC--ccccchHHHHHHhccCCcceEEEeeeeeccccccC---HHHHH
Confidence 99999998887765443 3455677766666653 3457888887766 458899999999999999999 88999
Q ss_pred HHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh------
Q 012124 254 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------ 327 (470)
Q Consensus 254 ~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~------ 327 (470)
++|+++ |+++++|.+++... ....+.. .+..+++.|..|.++ +.-.+|+++.....++.+....
T Consensus 168 ~~~~~~-g~~~~vD~~qs~g~----~~~d~~~----~~~D~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T d1h0ca_ 168 ELCHRY-KCLLLVDSVASLGG----TPLYMDR----QGIDILYSGSQKALN-APPGTSLISFSDKAKKKMYSRKTKPFSF 237 (388)
T ss_dssp HHHHTT-TCEEEEECTTTTTT----SCCCTTT----TTCSEEEEESSSTTC-CCTTCEEEEECHHHHHHHTTCSSCCSCS
T ss_pred HHhhcc-cccceecccccccc----ccccccc----cccceeccccccccc-CCCceEEEeecHHHHHhhhhcccccccc
Confidence 999999 99999999987522 2222222 344588889999995 3335788888887776553210
Q ss_pred -----------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----
Q 012124 328 -----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---- 386 (470)
Q Consensus 328 -----------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---- 386 (470)
......++.....++..++..- .+..++.+.++.++..+++++.+... |+....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~--~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~r 314 (388)
T d1h0ca_ 238 YLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI--AEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALR 314 (388)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGB
T ss_pred ccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH--HHhccccccccccchhHHHHHHHhhc-CcccccCCHHHc
Confidence 1112234444444444444420 02235667777777888888888776 43332211
Q ss_pred ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE-eec--CHHHHHHHHHHHHHHHHh
Q 012124 387 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS-YAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 387 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls-~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
....+.+.+|+.+ +..++.+.|++++||.+..|.....++.||+| ++. +.++++.+++.|++++++
T Consensus 315 s~~i~~~~~p~~~-----------~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~ 383 (388)
T d1h0ca_ 315 LPTVTTVAVPAGY-----------DWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQH 383 (388)
T ss_dssp CTTEEEEECCTTC-----------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC-----------CHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2223566777654 78899999988889999998654456789999 553 789999999999999999
Q ss_pred hCC
Q 012124 464 LRP 466 (470)
Q Consensus 464 ~~~ 466 (470)
++.
T Consensus 384 l~k 386 (388)
T d1h0ca_ 384 CPK 386 (388)
T ss_dssp SCC
T ss_pred hcc
Confidence 875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=1.3e-21 Score=185.30 Aligned_cols=323 Identities=14% Similarity=0.078 Sum_probs=200.5
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 176 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~ 176 (470)
++|. ++....++|.+++|+.+........|++.....++|+.+++++ | +.+++|++|+|+++++..++..+..
T Consensus 2 ~~f~-nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~----g--~~~~~v~~tsggtean~~a~~~~~~ 74 (340)
T d1svva_ 2 YSFV-NDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELL----E--RPDADVHFISGGTQTNLIACSLALR 74 (340)
T ss_dssp EECS-CSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHH----T--CTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred CCcc-cCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHh----C--CCcceEEEcCCHHHHHHHHHHHHhh
Confidence 3453 3444566889999999887666677887778888999999886 4 4678999999999999999999999
Q ss_pred CCCeEEEcCCCCCChHH--HHHHcCCEEEEecCcCCCCCccCHHhHhhhc------cCCceEEEEcCCCCCcccCCCHHH
Q 012124 177 PGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILCSPSNPTGSVYPKNL 248 (470)
Q Consensus 177 ~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l------~~~~~~i~l~~p~nPtG~~~s~~~ 248 (470)
+++.+++..+.+..+.. .....+.....+...... .+.+...++. ......++++...|++|.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (340)
T d1svva_ 75 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGK---LRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQE 151 (340)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSC---CCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHH
T ss_pred hccccccccccceeeeecccccccceeeeeccccccc---ccchhHHHHhhhhhcccCCcceeeeecccccccccccHHH
Confidence 99999998887765442 222334444444332211 2333322222 112344555555566777888888
Q ss_pred HHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhh
Q 012124 249 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 328 (470)
Q Consensus 249 ~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 328 (470)
+..+.+.|+++ +.+++.|++|.................. ....+...+..|.. .+.+.++................
T Consensus 152 ~~~~~~~~~~~-g~~~~~d~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (340)
T d1svva_ 152 LEDISASCKEH-GLYLFLDGARLASALSSPVNDLTLADIA-RLTDMFYIGATKAG--GMFGEALIILNDALKPNARHLIK 227 (340)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTHHHHHTSTTCCCCHHHHH-HHCSEEEEECTTTT--CSSCEEEEECSGGGCTTHHHHHH
T ss_pred hhhhhcccccc-cceeeeeccceeeeeccccccccccccc-ccceeeecCCcccc--ccccccccccchhhhhhhhhhcc
Confidence 99999999999 9999999998754332221111111111 12334455555554 33445666555544443332222
Q ss_pred hcc--CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEEEeeeccCccCCcccCC
Q 012124 329 QFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 406 (470)
Q Consensus 329 ~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 406 (470)
... .........++...++ ........+....+++++.+.|+.. |+.+..|..+.++++.+++
T Consensus 228 ~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~~--------- 292 (340)
T d1svva_ 228 QRGALMAKGWLLGIQFEVLMK-----DNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILEN--------- 292 (340)
T ss_dssp HTTCCCTTTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEEH---------
T ss_pred cccCccchhhHHHHHHHHHhh-----hhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCCH---------
Confidence 222 2222222333333333 2333445566677888888888887 8888767666668888753
Q ss_pred CCCCCHHHHHHHHHHcC---CEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 407 GKIENSESLCRYLLDKA---QVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 407 ~~~~~~~~l~~~L~~~~---gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
+..++|+++. ++.+.+. .++.+|++++. ++++|++++++|++
T Consensus 293 -------~~~~~l~~~~~~~~~~~~~~----~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 293 -------TMIAELNNDFDMYTVEPLKD----GTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp -------HHHHHHTTTEECEEEEEETT----TEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhhhhhcccccCC----CCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 2344555442 3333332 35789998875 99999999999876
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.82 E-value=6e-19 Score=172.79 Aligned_cols=332 Identities=13% Similarity=0.105 Sum_probs=210.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC----CcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 170 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~----~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~ 170 (470)
+++.|..+.-. +.|..+.+++.+.+.+....... .....++.+.+.+.+.+..| +++++|++|+++++++..+
T Consensus 27 ~~iYLd~as~g-~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg--a~~~ei~~~~~~T~~~~~~ 103 (404)
T d1qz9a_ 27 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG--ARDGEVVVTDTTSINLFKV 103 (404)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT--CCTTSEEECSCHHHHHHHH
T ss_pred CCEEcCCcccc-cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC--CCCCcEEEecCchHHHHHH
Confidence 45667666544 24677888888887653322211 11112334444444444445 6889999999999999877
Q ss_pred HHHh------cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 171 VLAV------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 171 ~~~l------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
+... ..+|+.|++.+-.++.........+.++..++.+.++ ..+++.+++++++++++|.++..+|.||..+
T Consensus 104 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~ 181 (404)
T d1qz9a_ 104 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRL--VDSPEELPQAIDQDTAVVMLTHVNYKTGYMH 181 (404)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEE--ESSGGGHHHHCSTTEEEEEEESBCTTTCBBC
T ss_pred hhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccc--cccchhHHHhcCCCceEEEEeccccccccee
Confidence 6532 3688888888877776554444444444444443322 3688999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHH
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 324 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~ 324 (470)
| +++|+++|+++ ++++++|.++.. +.....+... +..+++.|.+|.+..+..-+|+++.+..+.+.+.
T Consensus 182 p---v~~i~~~~~~~-~~~~~vD~~q~~----g~~~~~~~~~----~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~ 249 (404)
T d1qz9a_ 182 D---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQA----GADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 249 (404)
T ss_dssp C---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred c---HHHHhcccccc-ccceeEEeeccc----cccccccccc----cceEEEEechhhcccCCceEEEEEechhhhhhCC
Confidence 9 88999999999 999999999875 2222333332 3458888899987433334678877765544321
Q ss_pred H-----------------------HhhhccCCCChHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 325 K-----------------------IQSQFTSGASSISQKAGVAALGLG-YAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 325 ~-----------------------~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
. .........+..........+..- ......+++...........+.+.+...+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 329 (404)
T d1qz9a_ 250 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 329 (404)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCE
Confidence 0 111122234444433333333210 0123334444444444444455555556688
Q ss_pred eecCCC-----ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--c-CHHHHHH
Q 012124 381 KMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--A-SLTTLQA 452 (470)
Q Consensus 381 ~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~-~~~~i~~ 452 (470)
++..|. +++ +-+.++ +..++.+.|.+ .||.+.. ..++.||+|++ . +++||+.
T Consensus 330 ~i~~p~~~~~r~~~-vsf~~~--------------~~~~v~~~L~~-~gi~~~~----r~~~~lRiS~~h~ynt~~did~ 389 (404)
T d1qz9a_ 330 TLVTPREHAKRGSH-VSFEHP--------------EGYAVIQALID-RGVIGDY----REPRIMRFGFTPLYTTFTEVWD 389 (404)
T ss_dssp EECSCSSGGGBCSE-EEEECT--------------THHHHHHHHHT-TTEECEE----ETTTEEEEECCTTTCCHHHHHH
T ss_pred EEECCCCccceeeE-EEEecC--------------CHHHHHHHHHH-CCCEEee----cCCCeEEEECCCCCCCHHHHHH
Confidence 876543 344 444554 56778888865 4886531 23578999996 2 8999999
Q ss_pred HHHHHHHHHHh
Q 012124 453 AVERIKKGLLT 463 (470)
Q Consensus 453 ~l~~l~~~l~~ 463 (470)
+++.|++++++
T Consensus 390 ~~~~L~~vl~~ 400 (404)
T d1qz9a_ 390 AVQILGEILDR 400 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=1e-17 Score=159.78 Aligned_cols=212 Identities=16% Similarity=0.178 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~ 209 (470)
..|.+.|++.- ..+..+++++++.|+..++.+++++||.|++.+..|.+....++ ..|.++..++.
T Consensus 62 ~~LE~~la~LE--------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~-- 131 (392)
T d1gc0a_ 62 NLLEARMASLE--------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-- 131 (392)
T ss_dssp HHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT--
T ss_pred HHHHHHHHHHh--------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc--
Confidence 44555555543 34678899999999999999999999999999999999887654 46999888865
Q ss_pred CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
-|++.+++++++++++|++.+|.|||..+.+ +++|+++|+++ |+++|+|.+|..-.+. .+ + +
T Consensus 132 -----~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~-g~~~vvDnT~atP~~~----~P---l--~ 193 (392)
T d1gc0a_ 132 -----ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQ----RP---L--E 193 (392)
T ss_dssp -----TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHC----CG---G--G
T ss_pred -----cCHHHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhc-CCEEEEecCccCcccc----Ch---H--H
Confidence 3889999999999999999999999999999 99999999999 9999999999742111 11 1 1
Q ss_pred CCceEEEeccCcccc-cccceeeEEEcCHHHHHHHH--HHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~--~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+-.|++.|.+|-++ -...-.|.++++.+.+.+++ ..+.......++.....+..-++. +..+.++..++
T Consensus 194 ~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-------L~lRm~~~~~n 266 (392)
T d1gc0a_ 194 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMDRHCAN 266 (392)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-------HHHHHHHHHHH
Confidence 355699999999984 23355688889998877653 455556777888887777666654 34444555667
Q ss_pred HHHHHHHhccCCCC
Q 012124 367 RDFLVKSFGELEGV 380 (470)
Q Consensus 367 ~~~l~~~L~~~~g~ 380 (470)
...+.+.|++.|.+
T Consensus 267 A~~lA~~L~~hp~V 280 (392)
T d1gc0a_ 267 AQVLAEFLARQPQV 280 (392)
T ss_dssp HHHHHHHHHTCTTE
T ss_pred HHHHHHHHHhCCCc
Confidence 77777888776554
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.81 E-value=5.3e-17 Score=154.88 Aligned_cols=223 Identities=13% Similarity=0.206 Sum_probs=167.1
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCC
Q 012124 125 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 200 (470)
Q Consensus 125 ~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 200 (470)
..|+- .|. +-++.+.+.+....| .+..+++++++.|+..++.+++++||.|++.+..|.+.... +...|.
T Consensus 55 ~~Y~R-~~n-PT~~~LE~~la~LEg----g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi 128 (397)
T d1y4ia1 55 YIYTR-LGN-PTTDALEKKLAVLER----GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 128 (397)
T ss_dssp SCCCT-TSC-HHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred ceeeC-CCC-HHHHHHHHHHHHHhC----CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCce
Confidence 44643 233 455555555554333 35688899999999999999999999999999999887654 456899
Q ss_pred EEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc
Q 012124 201 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 280 (470)
Q Consensus 201 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~ 280 (470)
++..++. -|++.+++++++++|+|++.+|.|||..+.+ +++|+++|+++ |+++|+|.++..-.+ .
T Consensus 129 ~~~~vd~-------~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~-gi~~vvDnT~atP~~----~ 193 (397)
T d1y4ia1 129 NVRFVDA-------GKPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQ-GALLVVDNTFMSPYC----Q 193 (397)
T ss_dssp EEEEECT-------TSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTT----C
T ss_pred EeeccCC-------CCHHHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcC-CceEEecCcccCccc----C
Confidence 9988874 3789999999999999999999999999999 88999999999 999999999874111 1
Q ss_pred ccccccCCCCCceEEEeccCcccc-cccceeeEEEcCHHHHHHHH--HHhhhccCCCChHHHHHHHHHHhcCCCChHHHH
Q 012124 281 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 357 (470)
Q Consensus 281 ~~~~~~~~~~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~--~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 357 (470)
.++ . .+-.|++.|.+|.++ -...=.|.++++.+.+...+ ..+.....+.++.....+..-|+. +.
T Consensus 194 ~Pl---~--~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~ 261 (397)
T d1y4ia1 194 QPL---Q--LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LG 261 (397)
T ss_dssp CGG---G--GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HH
T ss_pred cch---h--cCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HH
Confidence 121 1 345599999999984 23344578888988876543 445556777888887777666654 33
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q 012124 358 KMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 358 ~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
-+.++..++...+.+.|++.|.+
T Consensus 262 lRm~~~~~nA~~lA~~L~~hp~V 284 (397)
T d1y4ia1 262 IRMERHCENALKIARFLEGHPSI 284 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 44455566777788888877665
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=1.2e-17 Score=161.87 Aligned_cols=310 Identities=16% Similarity=0.182 Sum_probs=204.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
.++-++++.+.+..+.... .+...+|.+.+++++ | .++++.+++++.|+.+++.++ +++||+|++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--G~~v~~~E~~la~~~----g----~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITT--GPKNQELEAAFCRLT----G----NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSS--SHHHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcCCCcC--CHHHHHHHHHHHHHH----C----cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 4556688888888764433 335678888888886 3 257888889999999999998 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+.....+...|++++.++++++ .+.+|++.|++++++++++|+++ +..|...+ +++|.++|+++ |++||+|
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~---~~~i~~i~~~~-~i~vIeD 152 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERY-GIPVIED 152 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHH-TCCBCEE
T ss_pred ccccccchhccccceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEe---CCCCCccc---hhHHHHHHHhc-CceEEec
Confidence 99999999999999999999864 46799999999999999999865 46788777 78889999999 9999999
Q ss_pred ccccccccCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhhc--------------
Q 012124 268 EIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF-------------- 330 (470)
Q Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~-------------- 330 (470)
.+++....-. .... +..+. .+.|| +|.++ .|- .|.++. ++++.+.++.++...
T Consensus 153 ~a~a~g~~~~--~~~~----g~~g~--~~~Sf~~~K~l~-~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~ 222 (376)
T d1mdoa_ 153 AAHATGTSYK--GRHI----GARGT--AIFSFHAIKNIT-CAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRA 222 (376)
T ss_dssp CTTCTTCEET--TEET----TSSSE--EEEECCTTSSSC-SSS-CEEEEESCHHHHHHHHHHTBTTEECC----------
T ss_pred cchhccCeeC--Ceec----ccccC--ccccCCCcCCCC-CCC-CCEEEEechhHHHHHHhhcccCCccccccccccccc
Confidence 9998632111 0111 11232 34455 59886 443 466665 456666666554322
Q ss_pred ----------cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCc----eEEEeeecc
Q 012124 331 ----------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFS 396 (470)
Q Consensus 331 ----------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~----g~~~~~~~~ 396 (470)
+...+.+.......-|. .+++..++.++..+.+.+.|+++++..+..+.. .++.++...
T Consensus 223 ~~~~~~~~g~n~~~~~~~Aai~~~qL~-------~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (376)
T d1mdoa_ 223 PQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRV 295 (376)
T ss_dssp -CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEEC
T ss_pred ccccchhcccccccchhhhhhhhhhhh-------hhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccc
Confidence 12223333332233333 234455555666777778887775544332221 111222211
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-----------CCC----------CCcEEEEeec--CHHHHHHH
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-----------FGD----------DTCIRISYAA--SLTTLQAA 453 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~-----------f~~----------~~~iRls~~~--~~~~i~~~ 453 (470)
... .. ..+-+++.+.|.++ ||.+.+... |.. ...+.|.+.. ++++++..
T Consensus 296 ~~~---~~----~~~Rd~l~~~L~~~-gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I 367 (376)
T d1mdoa_ 296 DEA---RC----GITRDALMASLKTK-GIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRV 367 (376)
T ss_dssp CHH---HH----SSCHHHHHHHHHHT-TBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHH
T ss_pred ccc---cc----hhhHHHHHHHHHHC-CCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHH
Confidence 100 00 00345788888665 898765321 000 1346666555 88999999
Q ss_pred HHHHHHHH
Q 012124 454 VERIKKGL 461 (470)
Q Consensus 454 l~~l~~~l 461 (470)
++.|++++
T Consensus 368 ~~~i~~i~ 375 (376)
T d1mdoa_ 368 ITALHQIA 375 (376)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=3.9e-18 Score=165.02 Aligned_cols=328 Identities=14% Similarity=0.126 Sum_probs=223.1
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|. ..+.. +|.+.+++.+++.+... . +..-..+.+..+++.+..... ...+.+.+++++++|.+
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e 110 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMA-M-PQTLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 110 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCC-C-CTTSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcc-c-ccccCCchHHHHHHHhhhhcc--ccceeeccccCchHHHH
Confidence 678899998754 34443 78999999999876321 1 222224677777777765332 23357999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCcCCCCCccCHHhHhhhccCCceEEEE
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 233 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l 233 (470)
.+++... .....|+....+|++......... ..+..+|. .|++.|++.+.+++.+|++
T Consensus 111 ~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~iAavi~ 183 (387)
T d1vefa1 111 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAVIL 183 (387)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCCeEEEEE
Confidence 9988742 234688888999988664433322 13344443 2889999999988888877
Q ss_pred cCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC-cccccccCCCCCceEEEeccCcccccccceee
Q 012124 234 CSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 311 (470)
Q Consensus 234 ~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G 311 (470)
...+...|. ..+++.+++|.++|++| |+++|.||++..|.-.+.. ......+.++ +-+++|.++ .|+.++
T Consensus 184 EPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~~~~~~~v~PD------i~~~gK~l~-gG~~~~ 255 (387)
T d1vefa1 184 EPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRFAFEHFGIVPD------ILTLAKALG-GGVPLG 255 (387)
T ss_dssp CSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCCS------EEEECGGGG-TTSSCE
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHc-CceEEecccccccCccCCCcccccCCcCCc------eeeecccCC-CCcccc
Confidence 544555665 57899999999999999 9999999999987332221 1111223332 555889998 899999
Q ss_pred EEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC--CCeecCCCceE
Q 012124 312 YIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--GVKMSEPQGAF 389 (470)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~~~~~~~~g~ 389 (470)
.+++..++.+.+.......+++.++++..++.+.|+.- + -....+..++.-+++.+.|+++. .+.-. ..-|+
T Consensus 256 ~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l---~--~~~~~~~v~~~g~~l~~~L~~l~~~~v~~v-rg~Gl 329 (387)
T d1vefa1 256 VAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---E--RTRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGL 329 (387)
T ss_dssp EEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---H--HHTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETT
T ss_pred ccccceeeeeccccCCccccCCCCcchhhhcccchhhc---c--cccccchHhhhhHHHHHHHHhcCCCceEEE-eecce
Confidence 99999988887766666677888999999998888741 1 12344555556666777776652 22111 12345
Q ss_pred EEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHHHH
Q 012124 390 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKKGL 461 (470)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~~l 461 (470)
+..+++.+. ....+.+.+.++ |+.+.+.. ++.+|++.+ .+++++++++++|+++|
T Consensus 330 ~~~ie~~~~------------~~~~~~~~~~~~-g~l~~~~g----~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 330 MVGLELKEK------------AAPYIARLEKEH-RVLALQAG----PTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEEEEESSC------------SHHHHHHHHHHH-CEECEESS----TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC------------chHHHHHHHHHC-CCeEEecC----CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 556677653 445555555555 77766532 357888865 39999999999999886
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=1.5e-18 Score=167.17 Aligned_cols=320 Identities=13% Similarity=0.103 Sum_probs=206.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCC--CCcCcHHHHHHHHHHHHHHcCCCCCCCc--EEEecChHHHHHHHHHHhcCCCCeEE
Q 012124 107 DTPVLIAEAGINAIREGFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCSPGDEVI 182 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~--~~~g~~~lr~~ia~~l~~~~g~~~~~~~--i~it~g~~~al~~~~~~l~~~gd~Vl 182 (470)
+.++.+++++.+. ..++++ ...-..+.|+.+++++ |. .+++ +++|+|++++++.++..+..+++.++
T Consensus 10 ~~~~~V~~A~~~~---~~~~~~~~~~~~~~~~r~~l~~l~----~~--~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~ 80 (361)
T d1m32a_ 10 TTSRTVKEAMLFD---SCTWDDDYNIGVVEQIRQQLTALA----TA--SEGYTSVLLQGSGSYAVEAVLGSALGPQDKVL 80 (361)
T ss_dssp CCCHHHHHTTCCC---CCTTSHHHHTTTHHHHHHHHHHHH----CS--SSSEEEEEEESCHHHHHHHHHHHSCCTTCCEE
T ss_pred CCCHHHHHHhhhh---ccCCCcHHHHHHHHHHHHHHHHHh----CC--CCCCEEEEECCCHHHHHHHHHHHhhhhccccc
Confidence 4467777665322 112221 1133456666666654 53 4443 77888999999999999998888887
Q ss_pred EcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCC
Q 012124 183 IPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 260 (470)
Q Consensus 183 v~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~ 260 (470)
+....+... .......+.....+..........+.+.......++++++.++..+|-||..++ +++|.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~- 156 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHRY- 156 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHHH-
T ss_pred eeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhhccc-
Confidence 776554332 233455666666665544443333445555556789999999999999999999 88899999999
Q ss_pred CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHH-----------------
Q 012124 261 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC----------------- 323 (470)
Q Consensus 261 ~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l----------------- 323 (470)
|+++++|.+++... .+..+ +. .+..+++.|..|.++.| ..+|+++..++..+..
T Consensus 157 g~~~~vDa~qs~G~----~~~d~---~~-~~~D~~~~s~~K~l~gp-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (361)
T d1m32a_ 157 GKTYIVDAMSSFGG----IPMDI---AA-LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRC 227 (361)
T ss_dssp TCEEEEECTTTTTT----SCCCT---TT-TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHH
T ss_pred ceeeEeecccccCc----ccccc---cc-cccceEEeeecccccCC-CCceEEEechhhhhhhccccccccccchhhhcc
Confidence 99999999998522 22222 22 35668999999988423 2378888877654322
Q ss_pred -HHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC---CceEEEeeeccCcc
Q 012124 324 -NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYY 399 (470)
Q Consensus 324 -~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~~~~~~~~~~ 399 (470)
.........+++.....+....+..-.. +.......++.+...+.+.+.++.. |.....+ .+...+.+.+|+..
T Consensus 228 ~~~~~~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p~~~ 305 (361)
T d1m32a_ 228 MEDNHGKWRFTSPTHTVLAFAQALKELAK-EGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSPEDP 305 (361)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCCCT
T ss_pred ccccccccCCCCCchhhhHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECCCCC
Confidence 1222233445666666666666553110 2234555566666777777777766 4443222 12223455666431
Q ss_pred CCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee-c-CHHHHHHHHHHHHHHH
Q 012124 400 GSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA-A-SLTTLQAAVERIKKGL 461 (470)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~-~-~~~~i~~~l~~l~~~l 461 (470)
. .+..++++.|.++ ||.+.+|.. ..++.+|+++. . +++|++.+++.|+++|
T Consensus 306 ~---------~~~~~~~~~l~~~-gi~i~~G~~-~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 306 Q---------YRFSEFYRRLKEQ-GFVIYPGKV-SQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp T---------CCHHHHHHHHHHT-TEECEECCC-SSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred C---------CCHHHHHHHHHHC-CcEEECCCc-CCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 1 1678888888765 899988853 34678999964 3 8899999999999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.6e-18 Score=165.51 Aligned_cols=332 Identities=14% Similarity=0.107 Sum_probs=215.4
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|... +.. ++.+.+++.+++.+.... ...........+++.+.+.. ..+.++++++++++..
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~sGseA~e 112 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVLGEYEEYITKLF----NYHKVLPMNTGVEAGE 112 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCC--CTTEEESSHHHHHHHHHHHH----TCSEEEEESSHHHHHH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCc--ccccccchHHHHHHhhhhcc----cccccccccCccccch
Confidence 67889999987533 333 788999999998763211 11111122233333333322 3478999999999999
Q ss_pred HHHHHhc---------C-CCCeEEEcCCCCCChHHHHHHcC-------------CEEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVC---------S-PGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~---------~-~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++... . ....++...-+|++......... ..+..+|. .|++.+++.+.
T Consensus 113 ~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~l~ 185 (404)
T d2byla1 113 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQ 185 (404)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHHHHHT
T ss_pred hHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHHHhcC
Confidence 9998742 1 22467777777776543322211 12333332 38899999986
Q ss_pred C-CceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC-cccccccCCCCCceEEEeccCcc
Q 012124 226 E-KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 226 ~-~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
+ ++.+|++...+...| ...+++.+++|.++|++| |+++|.||++..|.-.+.. ......+.++ +-+|+|.
T Consensus 186 ~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~a~~~~gv~PD------i~~~gK~ 258 (404)
T d2byla1 186 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRWLAVDYENVRPD------IVLLGKA 258 (404)
T ss_dssp STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCCS------EEEECGG
T ss_pred CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc-CeEEEeeccccccccccccchhhhcCCCCC------EEEECch
Confidence 4 566666644455566 567889999999999999 9999999999886333321 1111222222 3378999
Q ss_pred ccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--
Q 012124 303 FAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-- 379 (470)
Q Consensus 303 ~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-- 379 (470)
++ .| +.+|.+++++++.+.+.......+++.++++..++.+.|+.- ++ ..+.+..++..+++.+.|.++..
T Consensus 259 l~-gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~~~ 332 (404)
T d2byla1 259 LS-GGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVL---EE--ENLAENADKLGIILRNELMKLPSDV 332 (404)
T ss_dssp GG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred hh-CCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHH---Hh--cCchhhhhHhhHHHHHHHHhhcccc
Confidence 98 66 899999999999887766666677888999999988888741 11 22344445555666666665421
Q ss_pred CeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHH
Q 012124 380 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERI 457 (470)
Q Consensus 380 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l 457 (470)
+.-. ...|++..+.+.+.. ..+...+.++|+++ ||.+.|.. .+.+|++... ++++|++++++|
T Consensus 333 i~~v-Rg~Gl~~~i~~~~~~---------~~~~~~~~~~l~~~-Gvl~~~~~----~~~i~l~PpL~it~~~id~~~~~l 397 (404)
T d2byla1 333 VTAV-RGKGLLNAIVIKETK---------DWDAWKVCLRLRDN-GLLAKPTH----GDIIRFAPPLVIKEDELRESIEII 397 (404)
T ss_dssp EEEE-EEETTEEEEEECCCS---------SCCHHHHHHHHHHT-TEECEEEE----TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred ceee-eecccEEEEEEecCC---------chhHHHHHHHHHhC-CeEEecCC----CCEEEEECCcCCCHHHHHHHHHHH
Confidence 1111 123444445554321 11567788888876 99987632 3678998653 999999999999
Q ss_pred HHHHHhh
Q 012124 458 KKGLLTL 464 (470)
Q Consensus 458 ~~~l~~~ 464 (470)
+++++++
T Consensus 398 ~~al~~f 404 (404)
T d2byla1 398 NKTILSF 404 (404)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 9998753
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.80 E-value=4.2e-18 Score=167.22 Aligned_cols=343 Identities=14% Similarity=0.122 Sum_probs=210.0
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.++|+..|.. .+.. +|.+.+++.+++.+......+ ..+...+++.+....+ ..+.+.+++++++|++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~----~~~~~~la~~~~~~~~---~~~~v~f~~sGseA~e 122 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAP----CALENVLAEMVNDAVP---SIEMVRFVNSGTEACM 122 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSC----CHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccc----hhHHHHHHHHHHhhCC---ccccccccCCcHHHHH
Confidence 6888999987753 3333 789999999998764332222 3556667777765443 4478999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHH--------HcCC------------EEEEecCcCCCCCccCHHhHhhhccC
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMAR--------IADA------------TPVILPTRISENFLLDPKVLESKLTE 226 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~--------~~g~------------~~~~v~~~~~~~~~~d~~~l~~~l~~ 226 (470)
.+++... ...++|+..+-+|++....+. ..+. +...++. -|++.+++.+++
T Consensus 123 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~le~~~~~ 195 (427)
T d2gsaa_ 123 AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALFAE 195 (427)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-------TCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-------chHHHHHHHHHh
Confidence 9998653 234688888889987543221 1111 1222221 388999998864
Q ss_pred ---CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcc
Q 012124 227 ---KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 227 ---~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
++.+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++..+..+ . ......++- ... +-+++|.
T Consensus 196 ~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~r~g-~-~~~~~~~gi-~PD---i~~~gK~ 268 (427)
T d2gsaa_ 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVMTGFRIA-Y-GGVQEKFGV-TPD---LTTLGKI 268 (427)
T ss_dssp STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBTTTB-T-TCHHHHTTC-CCS---EEEECGG
T ss_pred CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHh-ceeeeeccccccceec-c-cchHHhcCC-CHH---HHhhhhc
Confidence 5556666444444564 66888999999999999 9999999999987443 2 112122211 111 3447899
Q ss_pred cccccceeeEEEcCHHHHHHHHHH---hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 379 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 379 (470)
+| .|+.+|.+++.+++.+.+... ....+++.++++..++.+.|+.-.. ++..+++.+.-...++.+.+..++.+-
T Consensus 269 lg-gG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~ 346 (427)
T d2gsaa_ 269 IG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQETGH 346 (427)
T ss_dssp GG-TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cC-CCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh-hhHHhhhhHHHHHHHHHHHHHHhhcCC
Confidence 98 899999999999998876542 2234677899999998888764221 233333333333333333333333321
Q ss_pred -CeecCCCceEE-E-eeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeecCHHHHHHHHHH
Q 012124 380 -VKMSEPQGAFY-L-FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAASLTTLQAAVER 456 (470)
Q Consensus 380 -~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~~~~~i~~~l~~ 456 (470)
+.+. ..++++ + |..-+-. ...............+...|+++ ||.+.|+.. ..+-+++..++++|++++++
T Consensus 347 ~~~v~-~~ggm~~i~~~~~~v~-~~~~~~~~d~~~~~~~~~~ll~~-Gv~l~p~~~----~~~~~~l~~Te~dId~~l~a 419 (427)
T d2gsaa_ 347 AACGG-QVSGMFGFFFTEGPVH-NYEDAKKSDLQKFSRFHRGMLEQ-GIYLAPSQF----EAGFTSLAHTEEDIDATLAA 419 (427)
T ss_dssp CCEEE-EETTEEEEESSSCCCC-SHHHHTTSCHHHHHHHHHHHHHT-TEECCSSTT----SCEECCTTCCHHHHHHHHHH
T ss_pred CcEEc-ccCCeEEEEEeccCCC-CHHHhhcccHHHHHHHHHHHHHC-CEEECCCCC----cceeCCCCCCHHHHHHHHHH
Confidence 2222 223342 2 2111100 00000000000123466677766 999888532 12335666799999999999
Q ss_pred HHHHHHhh
Q 012124 457 IKKGLLTL 464 (470)
Q Consensus 457 l~~~l~~~ 464 (470)
|+++++++
T Consensus 420 l~~al~~L 427 (427)
T d2gsaa_ 420 ARTVMSAL 427 (427)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHhC
Confidence 99998764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.6e-18 Score=170.29 Aligned_cols=356 Identities=11% Similarity=0.055 Sum_probs=219.1
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|. ..+.. ++.+.+++.+++.+..+.. ......+....+++.+.+..... ..+.++.++++++|.+
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e 115 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC-FQVLAYEPYLELCEIMNQKVPGD-FAKKTLLVTTGSEAVE 115 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCC-TTTEECHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcc-cccccCcHHHHHHHHHHhhhhhc-ccceeeeeccccchhh
Confidence 678899999884 34443 7899999999886532211 12222455566777776654321 2358999999999999
Q ss_pred HHHHHhc--CCCCeEEEcCCCCCChHHHHHH-cCC-------------EEEEecC--cCCCCCccC----HHhHhhhc--
Q 012124 169 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPT--RISENFLLD----PKVLESKL-- 224 (470)
Q Consensus 169 ~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~--~~~~~~~~d----~~~l~~~l-- 224 (470)
.+++... ...++|+...-+|++....... .|. .....+. ...+..... .+.+....
T Consensus 116 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (425)
T d1sffa_ 116 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAA 195 (425)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhccc
Confidence 9988752 2336788888899987765443 221 1111221 111110000 11111111
Q ss_pred cCCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCCCceEEEeccCcc
Q 012124 225 TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 225 ~~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
..++.++++...+...|. ..+++.+++|.++|++| |+++|.||++..+...+. .......+.++ +-+++|.
T Consensus 196 ~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gR~g~~~a~~~~gv~PD------i~~~gK~ 268 (425)
T d1sffa_ 196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTLFAMEQMGVAPD------LTTFAKS 268 (425)
T ss_dssp GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGTTSCCS------EEEECGG
T ss_pred ccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHc-CceEEeccccccCCCcchhhHHHhcCCCcc------ceecccc
Confidence 124556666444544564 67899999999999999 999999999998532222 11122223332 5558999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCee
Q 012124 303 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 382 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 382 (470)
++ .|+.+|.+++.+++.+.+.......+++.++++..++.+.|+.-.. +...++..+.-...++.+.+.+++.+-+.-
T Consensus 269 l~-gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~ 346 (425)
T d1sffa_ 269 IA-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEKHPEIGD 346 (425)
T ss_dssp GG-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred cC-CCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhhhhhHhhCCceEE
Confidence 98 8999999999999988777666667788999999999888874211 233444444444444555555555543222
Q ss_pred cCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHH
Q 012124 383 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKG 460 (470)
Q Consensus 383 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~ 460 (470)
.. ..|+.+.+.+......... .......+.++++++ ||.+.++..+ .+.+|++... ++++|++++++|+++
T Consensus 347 vr-g~Gl~~~i~f~~~~~~~~~---~~~~~~~~~~~l~~~-Gvl~~~~g~~--~n~i~~~PpL~it~~eid~~l~~l~~a 419 (425)
T d1sffa_ 347 VR-GLGAMIAIELFEDGDHNKP---DAKLTAEIVARARDK-GLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIISQC 419 (425)
T ss_dssp EE-EETTEEEEEEBGGGCTTSB---CHHHHHHHHHHHHHT-TEECEEESTT--SCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EE-ccccEEEEEEeccCccCCc---cHHHHHHHHHHHHHC-CCEEeccCCC--CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 22 2244344554221000000 000134677777766 9988875432 4678998654 999999999999999
Q ss_pred HHhhC
Q 012124 461 LLTLR 465 (470)
Q Consensus 461 l~~~~ 465 (470)
+++++
T Consensus 420 l~eik 424 (425)
T d1sffa_ 420 FDEAK 424 (425)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99886
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=6.4e-17 Score=154.03 Aligned_cols=200 Identities=15% Similarity=0.167 Sum_probs=154.3
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCCCCCccCHHhHhhhccCCce
Q 012124 154 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSR 229 (470)
Q Consensus 154 ~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 229 (470)
.+..+++++++.|+..++.+++++||.|++.+..|.+....+ ...|..+..+.. .|.+.++++++++++
T Consensus 65 g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~-------~d~~~~~~~~~~~t~ 137 (384)
T d1cs1a_ 65 GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-------GDEQALRAALAEKPK 137 (384)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-------TCHHHHHHHHHTCCS
T ss_pred CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-------CCHHHHHhhcccccc
Confidence 367899999999999999999999999999999998775544 346777766653 488999999999999
Q ss_pred EEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc-cccc
Q 012124 230 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGW 308 (470)
Q Consensus 230 ~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~G~ 308 (470)
+||+.+|.|||..+.+ +++|+++|+++ |+++|+|+.+..-.+ ..+ +. .+-.|++.|.+|.++ -...
T Consensus 138 ~v~~EspsNP~l~v~D---i~~i~~ia~~~-g~~~vVDNT~atP~~----~~P---l~--~GaDiVvhS~TKyi~Ghsdv 204 (384)
T d1cs1a_ 138 LVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPAL----QNP---LA--LGADLVLHSCTKYLNGHSDV 204 (384)
T ss_dssp EEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTT----CCG---GG--GTCSEEEEETTTTTTCSSCC
T ss_pred EEEEeccccccceecc---HHHHhhhhhhc-CcEEEEeccccCccc----ccc---cc--cCCCEEEEccccccccCCCc
Confidence 9999999999999999 88999999999 999999999963111 111 21 355699999999984 2223
Q ss_pred eeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 309 RLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 309 r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
=.|.+++ ++++.+.+...........+++....+..-|+. +.-+.++..++...+.+.|++.|.+
T Consensus 205 ~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-------L~lRm~~~~~nA~~lA~~L~~hp~V 270 (384)
T d1cs1a_ 205 VAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAIVKYLQTQPLV 270 (384)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred ccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch-------hHHHHHHHHHHHHHHHHhcccCCce
Confidence 3566666 566777787777777778888887776666653 3344455567777888888877655
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=9.5e-17 Score=152.79 Aligned_cols=213 Identities=14% Similarity=0.152 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcCCC
Q 012124 136 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISE 211 (470)
Q Consensus 136 lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~ 211 (470)
-++.+.+.+...-| .+..+++++++.|+.. +..++++||.|++.++.|.+....++ ..|.++..+..
T Consensus 50 t~~~le~~la~LE~----~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~---- 120 (380)
T d1ibja_ 50 TRDALESLLAKLDK----ADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT---- 120 (380)
T ss_dssp HHHHHHHHHHHHHT----CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT----
T ss_pred HHHHHHHHHHHHcC----CceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc----
Confidence 34445555444333 3567888888999974 56788999999999999998877664 37888877764
Q ss_pred CCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCC
Q 012124 212 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 291 (470)
Q Consensus 212 ~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~ 291 (470)
.+++.+++++++++++|++.+|.|||..+.+ +++|+++|+++ |+++|+|+++..-.+ ..+ +. .+
T Consensus 121 ---~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vVDnT~atP~~----~~P---l~--~G 184 (380)
T d1ibja_ 121 ---TKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQ-GALVLVDNSIMSPVL----SRP---LE--LG 184 (380)
T ss_dssp ---TSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTT-TCEEEEECTTTCTTT----CCG---GG--TT
T ss_pred ---chHHHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHc-CCeEEeecccccccc----ccc---cc--cC
Confidence 3889999999999999999999999999999 88999999999 999999999964211 112 21 35
Q ss_pred ceEEEeccCcccccc-cceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 012124 292 RTLTVNGFSKAFAMT-GWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 369 (470)
Q Consensus 292 ~~i~i~S~sK~~~~~-G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 369 (470)
-.|++.|.+|.++-. ..=.|.++. +.++.+.+...+.......++.....+..-++. +..+.++..++...
T Consensus 185 aDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~lRm~~~~~nA~~ 257 (380)
T d1ibja_ 185 ADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-------MALRIEKQQENARK 257 (380)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHH
T ss_pred CCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh-------hhhhHHHHHHHHHH
Confidence 569999999998422 233566654 467888888888888888888887777776664 34444555667777
Q ss_pred HHHHhccCCCC
Q 012124 370 LVKSFGELEGV 380 (470)
Q Consensus 370 l~~~L~~~~g~ 380 (470)
+.+.|++.|.+
T Consensus 258 lA~~L~~hp~V 268 (380)
T d1ibja_ 258 IAMYLSSHPRV 268 (380)
T ss_dssp HHHHHHTCTTC
T ss_pred HHHHHHhCCCe
Confidence 78888776554
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.78 E-value=1.7e-16 Score=153.78 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=208.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 187 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~ 187 (470)
..+-.+++.+.+..+...+....-..++.+.+++++ ...+++.+++++.|+.++++++ +++||+|+++..+
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t 83 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFT 83 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccc
Confidence 456678888988876432333344567888888774 3357899999999999999997 7899999999999
Q ss_pred CCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEe
Q 012124 188 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 267 (470)
Q Consensus 188 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~D 267 (470)
|+.....+...|++++.++++++ .+.+|++.+++.+++++++|+ +.+..|...+ +.++.++|+++ +++||+|
T Consensus 84 ~~a~~~ai~~~g~~p~~~d~~~~-~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d---~~~i~~~~~~~-~i~lieD 155 (384)
T d1b9ha_ 84 FISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISADT-GVPLLQD 155 (384)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHH-TCCBCEE
T ss_pred ccccccccccccccccccccccc-ccccchhhhcccccccccccc---cccccccccc---cccchhhhhhh-hhhhhhh
Confidence 99999999999999999999754 467999999999999999986 4466677777 78889999999 9999999
Q ss_pred cccccccc-CCCCcccccccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhc---------------
Q 012124 268 EIYEHIIY-APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF--------------- 330 (470)
Q Consensus 268 d~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~--------------- 330 (470)
.+++.... .+. .+..+. +-.++-.+.+|.++ .| .-|.++. ++++.+.++......
T Consensus 156 ~a~a~ga~~~g~---~~g~~g---~~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (384)
T d1b9ha_ 156 AAHAHGARWQGK---RVGELD---SIATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA 227 (384)
T ss_dssp CTTCTTCEETTE---EGGGSS---SCEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred hceecccccCCE---ecCccc---ccceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCcccccccccccc
Confidence 99986332 221 122221 22233334478885 44 3577665 456777666654321
Q ss_pred --cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-----Cc-eEEEeeeccCccCCc
Q 012124 331 --TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-----QG-AFYLFIDFSTYYGSE 402 (470)
Q Consensus 331 --~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-----~~-g~~~~~~~~~~~~~~ 402 (470)
++-.+.+....+...|+. +++..+.-+++.+++.+.|++++++..... .. .++..+.++....
T Consensus 228 G~n~rms~l~Aaig~~qL~~-------ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-- 298 (384)
T d1b9ha_ 228 GSNMRLNEFSASVLRAQLAR-------LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE-- 298 (384)
T ss_dssp CCBCBCBHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH--
T ss_pred ccccccccchhhhhhhhhhh-------cccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc--
Confidence 122444543334444442 334444445666777788887777643211 11 1223334443210
Q ss_pred ccCCCCCCCHHHHHHHHHHcCCEEEECCCC----------CCC-------------------CCcEEEEeec--C-HHHH
Q 012124 403 AEGFGKIENSESLCRYLLDKAQVALVPGDA----------FGD-------------------DTCIRISYAA--S-LTTL 450 (470)
Q Consensus 403 ~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~----------f~~-------------------~~~iRls~~~--~-~~~i 450 (470)
.+-+++.+.|.++ ||.+.+... ++. +..+.|-+.. + ++++
T Consensus 299 -------~~Rd~l~~~L~~~-GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei 370 (384)
T d1b9ha_ 299 -------ERRNALVDRLVEA-GLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPEL 370 (384)
T ss_dssp -------HHHHHHHHHHHHT-TCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHH
T ss_pred -------ccHHHHHHHHHHC-CCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHH
Confidence 0124688888655 898765421 010 0246666654 5 6799
Q ss_pred HHHHHHHHHHHHh
Q 012124 451 QAAVERIKKGLLT 463 (470)
Q Consensus 451 ~~~l~~l~~~l~~ 463 (470)
+..++.|++++++
T Consensus 371 ~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 371 HATAEIIADAVAR 383 (384)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.78 E-value=2.9e-17 Score=162.23 Aligned_cols=343 Identities=13% Similarity=0.073 Sum_probs=217.6
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
-+|||-+.....+..+..+.++ ..+...|+..+...+|.+.+++++ ..+.++.+++++.|+.++++++
T Consensus 43 v~iDl~sDs~t~am~~~~~aa~----~~GDd~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An~~a~~~l 110 (456)
T d1c7ga_ 43 IYIDLLTDSGTNAMSDKQWAGM----MIGDEAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAENLLSQLA 110 (456)
T ss_dssp CSEECSCSSSCCCEEHHHHHHT----TSCCCCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHHHHHHHHH
T ss_pred eeeEcccCCCcccchHHHHHHH----hccchhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHHHHHHHHh
Confidence 4688877666544445444432 346677988888889999999986 3467899999999999999999
Q ss_pred cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC--------CCCCccCHHhHhhhccC----CceEEEEcCCCCCc-c
Q 012124 175 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--------SENFLLDPKVLESKLTE----KSRLLILCSPSNPT-G 241 (470)
Q Consensus 175 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--------~~~~~~d~~~l~~~l~~----~~~~i~l~~p~nPt-G 241 (470)
++|||+|+.... +......+...|+..+.+..+. ...+.+|++.|++.+++ ++.++++.+++|+. |
T Consensus 111 ~~~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG 189 (456)
T d1c7ga_ 111 IKPGQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGG 189 (456)
T ss_dssp CCTTEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTS
T ss_pred cCCCCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeeccccccc
Confidence 999999987654 4444556677899888776532 12345899999999954 34577889998875 6
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccc--c-----CCCCcccccccCC-C-CCceEEEeccCcccccccceeeE
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII--Y-----APATHTSFASLPG-M-WERTLTVNGFSKAFAMTGWRLGY 312 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~--~-----~~~~~~~~~~~~~-~-~~~~i~i~S~sK~~~~~G~r~G~ 312 (470)
.+++.+++++|.++|++| |+.+++|++..... + .+....++..+.. . ..-.++..|++|.++.++ -|+
T Consensus 190 ~~~~~~~l~~i~~~a~~~-~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~ 266 (456)
T d1c7ga_ 190 QPVSMANMRAVHEMASTY-GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGF 266 (456)
T ss_dssp BCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEE
T ss_pred ceecHHHHHHHHHHHHHc-CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeE
Confidence 889999999999999999 99999999864210 0 0111112211100 0 011256668999986332 377
Q ss_pred EEcC-HHHHHHHHHHhhhcc-----CCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC
Q 012124 313 IAGP-KHFVAACNKIQSQFT-----SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 386 (470)
Q Consensus 313 ~~~~-~~~~~~l~~~~~~~~-----~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 386 (470)
++.+ +++.++++....... ...+.....+++..+.... ..++++ ...++.++|.+.|.+. |+.+..|.
T Consensus 267 i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~-~~~~l~----~r~~~~~~L~e~L~~~-g~~vv~p~ 340 (456)
T d1c7ga_ 267 LCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM-QYEYIE----HRVKQVRYLGDKLREA-GVPIVEPT 340 (456)
T ss_dssp EEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHT-CHHHHH----HHHHHHHHHHHHHHHT-TCCBCSSC
T ss_pred EEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhc-CHHHHH----HHHHHHHHHHHHHHhc-cCCcccCC
Confidence 7654 567666654432221 1223333333333333211 123322 2244556777888877 77777777
Q ss_pred ceEEEeeeccCccC-CcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-------------CCCCcEEEEeec---CHHH
Q 012124 387 GAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-------------GDDTCIRISYAA---SLTT 449 (470)
Q Consensus 387 ~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-------------~~~~~iRls~~~---~~~~ 449 (470)
++..++++...... .... .....++...|..+.||...+...+ .....+||++.. ++++
T Consensus 341 g~~~v~vda~~~~~~i~~~----~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~ 416 (456)
T d1c7ga_ 341 GGHAVFLDARRFCPHLTQD----QFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAH 416 (456)
T ss_dssp CSSEEEEEHHHHCTTSCGG----GCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHH
T ss_pred CCcceeEechhhccCCCcc----cccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHH
Confidence 77766665322100 0000 0134566666766779865432111 112359999874 8999
Q ss_pred HHHHHHHHHHHHHh
Q 012124 450 LQAAVERIKKGLLT 463 (470)
Q Consensus 450 i~~~l~~l~~~l~~ 463 (470)
|+..++.|++++++
T Consensus 417 iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 417 MDVVADGIIKLYQH 430 (456)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.78 E-value=3.2e-16 Score=149.73 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~ 210 (470)
+-.+.+.+.+....| .+..+++++++.|+..++.+++++||.|++.+..|.+....+ ...|.++..++.
T Consensus 67 Pt~~~LE~~la~LEg----g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~--- 139 (398)
T d1qgna_ 67 PTTVVLEEKISALEG----AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP--- 139 (398)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS---
T ss_pred hHHHHHHHHHHHHhC----CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccc---
Confidence 344444444443333 367899999999999999999999999999999999877665 457888877763
Q ss_pred CCCccCHHhH-hhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 211 ENFLLDPKVL-ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 211 ~~~~~d~~~l-~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
.+.+.. ++.+++++++|++.+|.|||..+.+ +++|+++|+++ |+++|+|+++..-. ....+.
T Consensus 140 ----~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~-g~~~vVDnT~atP~-------~~~Pl~-- 202 (398)
T d1qgna_ 140 ----ADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPL-------NQKALA-- 202 (398)
T ss_dssp ----SCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTT-------TCCTTT--
T ss_pred ----cchhhhhhhhccccceEEEccCccccccccch---HHHHHHHHhhc-CCEEEecceeeccc-------cCCchh--
Confidence 244444 4455789999999999999999999 99999999999 99999999986411 111122
Q ss_pred CCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 368 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 368 (470)
.+-.|++.|.+|.++ -..+=.|.++.+++++..+.........+.++.....+..-|+. +.-+.++..++..
T Consensus 203 ~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------L~lRm~~~~~nA~ 275 (398)
T d1qgna_ 203 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTAL 275 (398)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHH
T ss_pred hCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH-------HHHHHHHHHHHHH
Confidence 355699999999984 22334577888999999999888888888898887766666654 3444455566777
Q ss_pred HHHHHhccCCCC
Q 012124 369 FLVKSFGELEGV 380 (470)
Q Consensus 369 ~l~~~L~~~~g~ 380 (470)
.+.+.|++.|.+
T Consensus 276 ~lA~~L~~hp~V 287 (398)
T d1qgna_ 276 RMAEILEAHPKV 287 (398)
T ss_dssp HHHHHHHTCTTE
T ss_pred HHHHHHHhCCCe
Confidence 788888776655
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.77 E-value=8.7e-18 Score=162.79 Aligned_cols=320 Identities=15% Similarity=0.156 Sum_probs=212.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
.|+.+++++... ..+++ .....++.+.+.+.+++.+|.+ +...|++++|++.+++.++..+..+|+.+++..-.
T Consensus 29 v~~~Vl~am~~~---~~~hr--~~ef~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~ 102 (377)
T d1vjoa_ 29 AHPSVLQAMNVS---PVGHL--DPAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAG 102 (377)
T ss_dssp CCHHHHHHHSSC---CCCTT--SHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCHHHHHHhCcC---CCCCC--CHHHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHhccccccccceeeec
Confidence 477777765321 23333 2334556666666666667753 44578888899999999999999999999888766
Q ss_pred CCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEE
Q 012124 188 WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264 (470)
Q Consensus 188 y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~i 264 (470)
+.... ......+.....+.....+ ..+.+..+... +.+++++.++..+|.||...+ ++++.++|+++ |.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~-g~~~ 176 (377)
T d1vjoa_ 103 YFGNRLVDMAGRYGADVRTISKPWGE--VFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GTLL 176 (377)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TCEE
T ss_pred hhhhhhhhhhhhhcccccccccCCCC--cccchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhhhc-cceE
Confidence 65433 3455567776666654333 24555554444 558888888888999999999 88999999999 9999
Q ss_pred EEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-----------------
Q 012124 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----------------- 327 (470)
Q Consensus 265 I~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~----------------- 327 (470)
++|.+++... ....+ +. .+..+++.|..|.++ ++-.+|+++..+..++......
T Consensus 177 ~vDa~~~~g~----~~~~~---~~-~~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (377)
T d1vjoa_ 177 LVDTVTSLGG----VPIFL---DA-WGVDLAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYW 247 (377)
T ss_dssp EEECTTTTTT----SCCCT---TT-TTCSEEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHH
T ss_pred EEecchhhhh----hhhcc---cc-cccceeeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhcc
Confidence 9999987421 11222 22 345588888999885 3345788888887776543211
Q ss_pred --hhccCCCChH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC-C--CceEEEeeeccCccCC
Q 012124 328 --SQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-P--QGAFYLFIDFSTYYGS 401 (470)
Q Consensus 328 --~~~~~~~~~~-~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~--~~g~~~~~~~~~~~~~ 401 (470)
......++.+ ...++..+... . .....+...++.+++.+.+.+.+... ++.... + .....+.+.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~~-- 322 (377)
T d1vjoa_ 248 GSERVYHHTAPINLYYALREALRL-I-AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDGV-- 322 (377)
T ss_dssp STTCCCCSCCCHHHHHHHHHHHHH-H-HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTTC--
T ss_pred CcccccccccceechhhhHHHHhh-h-hhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCCC--
Confidence 1111222332 22222222221 0 12335677777788888888888775 443322 2 12233556677653
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEe-ec--CHHHHHHHHHHHHHHHH
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISY-AA--SLTTLQAAVERIKKGLL 462 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~-~~--~~~~i~~~l~~l~~~l~ 462 (470)
+..+++..|++++||.+..|.....++.||+|. +. ++|+++++++.|+++++
T Consensus 323 ---------~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 323 ---------DGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ---------CHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ---------CHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 788999999888899999887655567899994 43 68999999999999874
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.7e-16 Score=153.88 Aligned_cols=340 Identities=12% Similarity=0.047 Sum_probs=214.0
Q ss_pred cCCCeEEccCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~~--~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.-. +.. ++.+.+++.+++.+..+.- ...-..+-...+++.+....+ ..-+.+.+++++++|.+
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~--~~~~~v~f~~sGseA~e 117 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCC-CSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcc-cCCccchHHHHHHHHHHhhhc--cCcceeeeccccccchh
Confidence 57788999888543 443 7999999999987632111 111112334444555544433 24578999999999999
Q ss_pred HHHHHhc-------CCCCeEEEcCCCCCChHHHHHHc-C-------------CEEEEecCcCC-CCCcc---CHHhHhhh
Q 012124 169 QAVLAVC-------SPGDEVIIPAPFWVSYPEMARIA-D-------------ATPVILPTRIS-ENFLL---DPKVLESK 223 (470)
Q Consensus 169 ~~~~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~-g-------------~~~~~v~~~~~-~~~~~---d~~~l~~~ 223 (470)
.+++... .+..+|+....+|++........ | ......|.... ..... +++.+++.
T Consensus 118 ~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (429)
T d1s0aa_ 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred hhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhh
Confidence 8887642 23357888888888765433222 1 11122222110 11112 34444443
Q ss_pred c---cCCceEEEEcCC-CCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCC-cccccccCCCCCceEEEe
Q 012124 224 L---TEKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVN 297 (470)
Q Consensus 224 l---~~~~~~i~l~~p-~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~-~~~~~~~~~~~~~~i~i~ 297 (470)
+ .+++.+|++... ++-.|. ..|++.+++|.++|++| |+++|.||++..|...+.. ......+.++ +-
T Consensus 198 ~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~~~~~~~~~v~PD------i~ 270 (429)
T d1s0aa_ 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKLFACEHAEIAPD------IL 270 (429)
T ss_dssp HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSGGGGGTCCCS------EE
T ss_pred hhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc-Ccceehhhccccccccccccccccceeccc------cc
Confidence 3 245666666543 465555 67999999999999999 9999999999987333321 1111222332 44
Q ss_pred ccCcccccccceeeEEEcCHHHHHHHHHHh-----hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 298 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 298 S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
+++|.++-.+..+|.+++.+++.+.+.... ...+++.++++..++.+.|+.-.. + +..+..++.-+++.+
T Consensus 271 ~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~-~----~~~~~~~~~g~~l~~ 345 (429)
T d1s0aa_ 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-G----DWQQQVADIEVQLRE 345 (429)
T ss_dssp EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-C----HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhcccccccc-c----cccchhhHHHHHHHH
Confidence 578999734489999999999998875422 235777899999999888874211 2 233344444455555
Q ss_pred HhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CH
Q 012124 373 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SL 447 (470)
Q Consensus 373 ~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~ 447 (470)
.|+++ +.+.-. ...|+++.+++.... +...+...++++ ||.+.|. .+.+|++... ++
T Consensus 346 ~L~~l~~~~~v~~v-rg~Gl~~~~e~~~~~-----------~~~~~~~~~~~~-Gl~~~~~-----g~~i~~~Ppl~it~ 407 (429)
T d1s0aa_ 346 QLAPARDAEMVADV-RVLGAIGVVETTHPV-----------NMAALQKFFVEQ-GVWIRPF-----GKLIYLMPPYIILP 407 (429)
T ss_dssp HHGGGGGCTTEEEE-EEETTEEEEEESSCB-----------CHHHHHHHHHHT-TEECCCB-----TTEEEECCCTTCCH
T ss_pred HHHHhccCCceEEE-eecccEEEEEecCcc-----------cHHHHHHHHHHC-CcEEEec-----CCEEEEeCCcCCCH
Confidence 55443 333211 123455666775542 567888888766 9988763 3689998554 99
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012124 448 TTLQAAVERIKKGLLTL 464 (470)
Q Consensus 448 ~~i~~~l~~l~~~l~~~ 464 (470)
++|++++++|++++++.
T Consensus 408 ~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 408 QQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp HHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.77 E-value=4.4e-17 Score=158.47 Aligned_cols=325 Identities=15% Similarity=0.135 Sum_probs=211.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCC
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 187 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~ 187 (470)
.++.+++++.+. ...++ .....++.+.+.+.+++.+|.+ +.+.|+++.|++.+++.++..+..+|+.|++..-.
T Consensus 28 ~~~~V~~Am~~~---~~~hr--~~ef~~i~~~~r~~L~~ll~~~-~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g 101 (388)
T d2ch1a1 28 CSKRVLTAMTNT---VLSNF--HAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNG 101 (388)
T ss_dssp CCHHHHHHTTSC---CCCTT--CHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCHHHHHHhCcC---CCCCC--CHHHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHHhccccccccccccc
Confidence 377777775322 12333 2344556666666666666753 33456677889999999999999999999988776
Q ss_pred CCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEE
Q 012124 188 WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 264 (470)
Q Consensus 188 y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~i 264 (470)
+.+.. ...+..+...+.+...... ..+.+..++.. ..++++++++..+|.||...+ .+++.++|+++ +.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~-~~~~ 175 (388)
T d2ch1a1 102 IWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH-DCLL 175 (388)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCEE
T ss_pred cccccchhhhhhhccccccccccccc--ccchhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhccc-ccee
Confidence 65543 3466778888888876433 36777666665 458899999999999999999 77888999999 9999
Q ss_pred EEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHh-----------------
Q 012124 265 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----------------- 327 (470)
Q Consensus 265 I~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~----------------- 327 (470)
++|.+.+... .... ++. .+-.+++.|-.|.++ +.-.+|+++..+..++......
T Consensus 176 ~vD~~ss~g~----~pid---~~~-~~~d~~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (388)
T d2ch1a1 176 IVDAVASLCG----VPFY---MDK-WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYW 246 (388)
T ss_dssp EEECTTTBTT----BCCC---TTT-TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHT
T ss_pred eeeeeecccc----cccc---hhc-cCceEEEEccccccC-CCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhh
Confidence 9999987522 1122 222 355688888899884 3334788888887776543211
Q ss_pred ------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC--C--CceEEEeeeccC
Q 012124 328 ------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLFIDFST 397 (470)
Q Consensus 328 ------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~--~--~~g~~~~~~~~~ 397 (470)
......++.....++..+++.-. ........+..+.........+... +..... + .+...+.+.+|+
T Consensus 247 ~~~~~~~~~~~t~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~p~ 323 (388)
T d2ch1a1 247 GCYDEPKRYHHTVASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK 323 (388)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT
T ss_pred cccccccccCccchHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEECCC
Confidence 01122334444444444443210 1112233333333333344444332 222111 1 123335678876
Q ss_pred ccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEE-eec--CHHHHHHHHHHHHHHHHhhCCC
Q 012124 398 YYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRIS-YAA--SLTTLQAAVERIKKGLLTLRPG 467 (470)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls-~~~--~~~~i~~~l~~l~~~l~~~~~~ 467 (470)
.+ +..++...|++++||.+.+|......+.||+| ++. +.|+|+.+++.|+++|+...+.
T Consensus 324 g~-----------~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~ 385 (388)
T d2ch1a1 324 GV-----------DWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPD 385 (388)
T ss_dssp TC-----------CHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CC-----------CHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhCCc
Confidence 54 78899999988889999998754456789999 554 6899999999999999987764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1e-16 Score=152.80 Aligned_cols=317 Identities=14% Similarity=0.073 Sum_probs=210.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCC
Q 012124 107 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 186 (470)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p 186 (470)
..|+.+++++.+. ..++ -.....++-+.+.+.+++.++. +.+.++++.|++.+++.++..++.+||+|++..-
T Consensus 10 ~v~~~V~~am~~~----~~~h-r~~~f~~i~~~~~~~l~~ll~~--~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~ 82 (348)
T d1iuga_ 10 RLHPKALEALARP----QLHH-RTEAAREVFLKARGLLREAFRT--EGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY 82 (348)
T ss_dssp CCCHHHHHHHHSC----CCCT-TSHHHHHHHHHHHHHHHHHHTC--SSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCHHHHHHhcCC----CCCC-CCHHHHHHHHHHHHHHHHHhCC--CCCEEEEeCchHHHHHHHHHhcccccccceeecc
Confidence 3477887776542 2222 2233445556666666666663 5567889999999999999999999999998877
Q ss_pred CCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC-CCEE
Q 012124 187 FWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLL 263 (470)
Q Consensus 187 ~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~-~~~~ 263 (470)
++.+ +...++.+|.++..+..... ..++++. ..+.+++.+++++..+.||...+ +++|.++|+++ ++.+
T Consensus 83 G~f~~~~~~~a~~~~~~~~~~~~~~g--~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l 154 (348)
T d1iuga_ 83 GKFSERFYEIALEAGLVVERLDYPYG--DTPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGL 154 (348)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTT--CCCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCE
T ss_pred hHHHHHHHHHHHhcCcccccccccCC--Ccccccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccce
Confidence 7554 33567789998888887532 2344443 33568888999988899999999 67777777765 1478
Q ss_pred EEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHH-------------HH-hh
Q 012124 264 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACN-------------KI-QS 328 (470)
Q Consensus 264 iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~-------------~~-~~ 328 (470)
+++|.+.+... .+..+ +. .+-.+++.|-.|.+ |.|| +|+++.+++.+++++ .. ..
T Consensus 155 ~~vDavss~g~----~~i~~---d~-~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~ 224 (348)
T d1iuga_ 155 VGADMVTSLLV----GEVAL---EA-MGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEG 224 (348)
T ss_dssp EEEECTTTBTT----BCCCS---GG-GTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT
T ss_pred eechhhhcccc----ccccc---cc-ccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccC
Confidence 88898877522 11222 21 23458888999998 7666 799999887766431 11 11
Q ss_pred hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC-ceEEEeeeccCccCCcccCCC
Q 012124 329 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFG 407 (470)
Q Consensus 329 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 407 (470)
...++++....+++.++|+... ++. .+..+..+..++.+.+.+... |+...+.. +.-...+.+|+.+
T Consensus 225 ~~~~Tp~v~~i~~l~~aL~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g~-------- 292 (348)
T d1iuga_ 225 ESAWTPAINLVLAVAAVLEEVL--PRL-EEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-------- 292 (348)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHG--GGH-HHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC--------
T ss_pred cccccccchHHHHHHHHHHHHH--HHH-hHHHHHHHHHHHHHhhhhhhh-hhccChhhcCCeEEEEECCCCC--------
Confidence 2234456666667777776421 222 333333344445555554444 66654322 1122567888764
Q ss_pred CCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 408 KIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 408 ~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+..++.+.|.+ +||.+.+|..--.+..|||+... +.++++.+++.|+++++++
T Consensus 293 ---~~~~~~~~l~~-~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 293 ---PYARVKEAFAQ-RGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp ---CHHHHHHHHHT-TTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHH-CCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 78888887754 59999988543334689999764 8899999999999999875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.77 E-value=1.3e-17 Score=166.27 Aligned_cols=347 Identities=13% Similarity=0.064 Sum_probs=206.4
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 174 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l 174 (470)
.+|||.++....+..+..+. ....+...|+..++..+|++.+++++ | .+++++++++++|...+++.+
T Consensus 43 ~~id~~sd~~t~~~~~~~~a----~~~~gd~~y~~~~~~~~le~~~a~l~----g----~~~~~~~~sGt~A~~~a~~~~ 110 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDHQWA----AMITGDEAYAGSRNYYDLKDKAKELF----N----YDYIIPAHQGRGAENILFPVL 110 (465)
T ss_dssp CSEECSCSSSCCCEEHHHHH----HHHTCCCCSSSCHHHHHHHHHHHHHH----C----CCEEEEESSHHHHHHHHHHHH
T ss_pred eeeecccccchhhhhHHHHH----HHhhhhhhhccChHHHHHHHHHHHHH----C----CCEEEECCCcHHHHHHHHHHH
Confidence 35666655444333333333 33456678988889999999999986 3 368999999999999999998
Q ss_pred cCCCCe-------EEEcCCCCCChHHHHHHcCCEEEEecCc--------CCCCCccCHHhHhhhccC----CceEEEEcC
Q 012124 175 CSPGDE-------VIIPAPFWVSYPEMARIADATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILCS 235 (470)
Q Consensus 175 ~~~gd~-------Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--------~~~~~~~d~~~l~~~l~~----~~~~i~l~~ 235 (470)
+++|+. ++...+.+..+.......|...+.++.. ....+.+|++.+++++++ .+.++++..
T Consensus 111 ~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~ 190 (465)
T d1ax4a_ 111 LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTV 190 (465)
T ss_dssp HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred HHHHHhcCCCCCeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeecc
Confidence 766544 3444444444455677889988877542 123456899999999853 344555566
Q ss_pred CCCCc-ccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccC-------CCCcccccccCCCC--CceEEEeccCccccc
Q 012124 236 PSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-------PATHTSFASLPGMW--ERTLTVNGFSKAFAM 305 (470)
Q Consensus 236 p~nPt-G~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~-------~~~~~~~~~~~~~~--~~~i~i~S~sK~~~~ 305 (470)
++|.. |.++|.+++++|.++|++| |+++|.|+++...... +..........++. -..++..|.+|..
T Consensus 191 ~~~~~g~~~~~~~~l~~i~~~~~~~-g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~-- 267 (465)
T d1ax4a_ 191 TCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDP-- 267 (465)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTT--
T ss_pred ccccCceecCCHHHHHHHHHHHHHc-CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCc--
Confidence 66655 4678999999999999999 9999999998632110 00001111110000 0124455556654
Q ss_pred ccceeeEEEcCHH--HHHHHHHHhh----hc-cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 306 TGWRLGYIAGPKH--FVAACNKIQS----QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 306 ~G~r~G~~~~~~~--~~~~l~~~~~----~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
.+.+.|+++.+.+ +......... .. ..+.......++...+..... ++ ..+...++.+++.+.|++.
T Consensus 268 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~-~~----~~~~~~~~~~~l~~~L~~~- 341 (465)
T d1ax4a_ 268 LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EE----YLHYRIGQVKYLGDRLREA- 341 (465)
T ss_dssp CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HH----HHHHHHHHHHHHHHHHHHT-
T ss_pred ccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhh-HH----HHHHHHHHHHHHHHHHHhh-
Confidence 5666799887643 2222222111 11 112233333333333332211 22 3333455667788888887
Q ss_pred CCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-------------CCCCCcEEEEeec
Q 012124 379 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-------------FGDDTCIRISYAA 445 (470)
Q Consensus 379 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~-------------f~~~~~iRls~~~ 445 (470)
|+.+..+.++++++++....... .. ........+...++.+.||...+... +...+.+||++..
T Consensus 342 g~~~v~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~ 418 (465)
T d1ax4a_ 342 GIPIQYPTGGHAVFVDCKKLVPQ-IP--GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIAR 418 (465)
T ss_dssp TCCBCSSCCSSEEEEESTTTCTT-SC--GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred cCccccCCCcceeeeehhhhcCC-Cc--cccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCC
Confidence 77777777776666554322100 00 00012345555666667887543211 1123579998753
Q ss_pred ---CHHHHHHHHHHHHHHHHhhC
Q 012124 446 ---SLTTLQAAVERIKKGLLTLR 465 (470)
Q Consensus 446 ---~~~~i~~~l~~l~~~l~~~~ 465 (470)
++++|+..++.|++++++..
T Consensus 419 ~~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 419 RVYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp TSSCHHHHHHHHHHHHTTHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887643
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.76 E-value=1.5e-17 Score=164.26 Aligned_cols=294 Identities=14% Similarity=0.131 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc--CCCCeEEEcCCCCCChHHHHHHcCCEEEEecCcC-CCC
Q 012124 136 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SEN 212 (470)
Q Consensus 136 lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~ 212 (470)
+...+..++.+..|. ......+..|+++++.+++.+.. .+++.|+++.-.|+++...+...|++++.++... ++.
T Consensus 114 ~~~~~~~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~ 191 (434)
T d2z67a1 114 LTNKILESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR 191 (434)
T ss_dssp HHHHHHHHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCc
Confidence 334444455555664 33455666777777777776653 3789999999999999999999999999887533 334
Q ss_pred CccCHHhHhhhccC-----CceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc-cCCCCccccccc
Q 012124 213 FLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASL 286 (470)
Q Consensus 213 ~~~d~~~l~~~l~~-----~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~-~~~~~~~~~~~~ 286 (470)
+.+|+++|++++++ ++.+|++++|++++|.+.+ +++|+++|++| |+++++|++|+... +..........
T Consensus 192 ~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~-~~~l~vD~a~g~~~~~~~~~~~~~~~- 266 (434)
T d2z67a1 192 VYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYYLEKLKKAFK- 266 (434)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHHT-
T ss_pred cCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHh-CCeEEEeccchhhhhhcccccccccc-
Confidence 56999999999953 5667778999999999988 88999999999 99999999997532 11110111111
Q ss_pred CCCCCceEEEeccCcccccccceeeEEE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 365 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 365 (470)
.+-.+++.|++|.++ .+...|++. .+.++++++...........+.....+....+. ....++..+...+
T Consensus 267 ---~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~-----~~g~~~~~~~~~~ 337 (434)
T d2z67a1 267 ---YRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQKN 337 (434)
T ss_dssp ---SCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred ---CCcceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH-----HhcchhHHHHHHH
Confidence 234578899999886 434456665 456666665544332222222222222222222 3445555566666
Q ss_pred HHHHHHHHhccC---CCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CC-------C
Q 012124 366 RRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PG-------D 431 (470)
Q Consensus 366 ~~~~l~~~L~~~---~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg-------~ 431 (470)
..+++.+.|+++ .|..+..+.....+.+.+.. +..++...|.++ ||... +. .
T Consensus 338 ~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~-------------~~~~l~~~L~~~-gI~g~~v~~~l~~~g~~~~ 403 (434)
T d2z67a1 338 SKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS-------------DPVEIAAKLYNL-RVTGPRGIKKTDHFGNCYL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS-------------CHHHHHHHHHHT-TEESCEEECTTCHHHHTCS
T ss_pred HHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC-------------CHHHHHHHHHHc-CCeeeehhhhccccCeeee
Confidence 667776666653 35555443333323333332 677888888765 88432 11 1
Q ss_pred CCCCCCcEEEEeec--CHHHHHHHHHHHHH
Q 012124 432 AFGDDTCIRISYAA--SLTTLQAAVERIKK 459 (470)
Q Consensus 432 ~f~~~~~iRls~~~--~~~~i~~~l~~l~~ 459 (470)
.++..+++|++++. +++||+.++++|++
T Consensus 404 ~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 404 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 12345789999886 99999999999875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.76 E-value=8.3e-17 Score=156.77 Aligned_cols=335 Identities=15% Similarity=0.086 Sum_probs=212.1
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|.. .+.. +|.+.+++.+++.+.... ...-.....+.+++.+....+ .+.+.++++++++..
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~sgs~a~~ 110 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SRAFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 110 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC--CTTSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCc--ccccchHHHHHHHHhhhhccc----cceeeeeccccchHH
Confidence 6778999998853 3333 789999999988753222 221223334445555554333 468899999999999
Q ss_pred HHHHHhc----------CCCCeEEEcCCCCCChHHHHHHcCC-------------EEEEecCcCCCCCccCHHhHhhhcc
Q 012124 169 QAVLAVC----------SPGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLT 225 (470)
Q Consensus 169 ~~~~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~l~ 225 (470)
.+++... .....++....+|++.......... ....+|. -+.+.++..+.
T Consensus 111 ~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 183 (404)
T d1z7da1 111 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELK 183 (404)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCcccccccc-------chHHHHHHHhc
Confidence 8887642 1224677777777765433222111 1111221 25677777775
Q ss_pred C-CceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCC-CcccccccCCCCCceEEEeccCcc
Q 012124 226 E-KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 226 ~-~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~S~sK~ 302 (470)
+ ++.+|++...+...|. ..+++.+++|.++|++| |+++|.||++..|.-.+. .......+.++ +-+++|.
T Consensus 184 ~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~-g~llI~DEV~tGfgRtG~~~~~e~~gv~PD------ivt~gK~ 256 (404)
T d1z7da1 184 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKLLCVHHYNVKPD------VILLGKA 256 (404)
T ss_dssp STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSSGGGGGTCCCS------EEEECGG
T ss_pred CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCCcccccccccccCCCCC------EEEEccc
Confidence 4 5566666444656675 56788899999999999 999999999987632222 11111222222 3478999
Q ss_pred ccccc-ceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCe
Q 012124 303 FAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 381 (470)
Q Consensus 303 ~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~ 381 (470)
++ .| +.+|.+++.+++.+.+.......+++.++++..++.+.|+.-.. +...+...+.-....+.+.+.+++.+.+.
T Consensus 257 l~-gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~ 334 (404)
T d1z7da1 257 LS-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLGGPFLENLKRELKDSKIVR 334 (404)
T ss_dssp GG-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred cc-CCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhhccchhHHHHHHHHHHhcCCCeE
Confidence 98 66 89999999999988777666667788899999999888863111 34445554544555566666666664332
Q ss_pred ecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEee--cCHHHHHHHHHHHHH
Q 012124 382 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYA--ASLTTLQAAVERIKK 459 (470)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~--~~~~~i~~~l~~l~~ 459 (470)
-.. .-|+++.+.+.+.. ....++..+|.++ ||.+.|.. ++.||++.+ .+++++++++++|++
T Consensus 335 ~vr-g~Gl~~~i~~~~~~----------~~~~~~~~~l~~~-Gl~~~~~~----~~~ir~~Ppl~it~~~id~~~~~l~~ 398 (404)
T d1z7da1 335 DVR-GKGLLCAIEFKNEL----------VNVLDICLKLKEN-GLITRDVH----DKTIRLTPPLCITKEQLDECTEIIVK 398 (404)
T ss_dssp EEE-EETTEEEEEECTTT----------CCHHHHHHHHHHT-TEECCEET----TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEE-eeCcEEEEEEcCCc----------ccHHHHHHHHHhC-CeEEecCC----CCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 222 23444566665431 1566788888766 99886632 467899755 499999999999999
Q ss_pred HHHhh
Q 012124 460 GLLTL 464 (470)
Q Consensus 460 ~l~~~ 464 (470)
+++++
T Consensus 399 alk~~ 403 (404)
T d1z7da1 399 TVKFF 403 (404)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.1e-15 Score=146.01 Aligned_cols=216 Identities=12% Similarity=0.107 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~ 210 (470)
+-++.+.+.+...-| .+..+++++++.|+..++.+++++||.|++.+..|.+....++ ..|.++..+..
T Consensus 58 Pt~~~le~~la~LEg----~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~--- 130 (391)
T d1cl1a_ 58 LTHFSLQQAMCELEG----GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP--- 130 (391)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT---
T ss_pred hhHHHHHHHHHHHhC----CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccC---
Confidence 445555555554333 3679999999999999999999999999999999998776654 57888887764
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHh--CCCEEEEEeccccccccCCCCcccccccCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPG 288 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~--~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~ 288 (470)
.|.+.+++++++++++|++.+|.||+..+.+ +++++++|++ + |+++|+|+.+..-.+. .+ ++
T Consensus 131 ----~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~-g~~~vVDnT~atP~~~----~P---l~- 194 (391)
T d1cl1a_ 131 ----LIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVLF----KA---LD- 194 (391)
T ss_dssp ----TCGGGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTSS----CG---GG-
T ss_pred ----ccccccccccccccceeeecccCcccccccc---cHHHHHHHHhccC-CcEEEEeccccchhhh----cc---cc-
Confidence 3789999999999999999999999999999 6777777744 6 8999999999742111 12 21
Q ss_pred CCCceEEEeccCccccc-ccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 012124 289 MWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 367 (470)
Q Consensus 289 ~~~~~i~i~S~sK~~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 367 (470)
.+-.|++.|.+|.++- ...=.|.++.++++...+.........+.++.....+..-|+. +.-+.++..++.
T Consensus 195 -~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~nA 266 (391)
T d1cl1a_ 195 -FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHESS 266 (391)
T ss_dssp -GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHH
T ss_pred -cccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHHH
Confidence 3456999999999842 2233578888888888888877777878888877666665553 334445556677
Q ss_pred HHHHHHhccCCCCe
Q 012124 368 DFLVKSFGELEGVK 381 (470)
Q Consensus 368 ~~l~~~L~~~~g~~ 381 (470)
..+.+.|++.|.+.
T Consensus 267 ~~vA~~L~~hp~V~ 280 (391)
T d1cl1a_ 267 LKVAEWLAEHPQVA 280 (391)
T ss_dssp HHHHHHHHTCTTEE
T ss_pred HHHHHHHHhccccc
Confidence 77888888776553
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=1.4e-16 Score=154.57 Aligned_cols=322 Identities=11% Similarity=0.061 Sum_probs=205.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCC--CCCCCcEEEecChHHHHHHHHHHhc---CCCCeEE
Q 012124 108 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVSNGAKQSILQAVLAVC---SPGDEVI 182 (470)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~--~~~~~~i~it~g~~~al~~~~~~l~---~~gd~Vl 182 (470)
.|+.+++++... ...+++ ....++-+.+.+.+++.++. +.+++.|++|+|++++++.++..++ +|||+|+
T Consensus 14 v~~~V~~Am~~~---~~~hr~--~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vl 88 (382)
T d2bkwa1 14 LSGAVQKALDVP---SLGHTS--PEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVL 88 (382)
T ss_dssp CCHHHHHTTSCC---CCCTTS--HHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEE
T ss_pred CCHHHHHHhCcc---cCCCCc--HHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceE
Confidence 367777665211 122221 12334444455555555553 3456789999999999999999986 6899999
Q ss_pred EcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhc-cCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhC
Q 012124 183 IPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 259 (470)
Q Consensus 183 v~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~ 259 (470)
+..-.+++.. ..++..|.....+...+ .+...+.+.+++.+ +.++++++++..+|.||...+ ..++.+.|+++
T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~~ 164 (382)
T d2bkwa1 89 VVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQAIKQT 164 (382)
T ss_dssp EECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH
T ss_pred EEEechhhhhhhhhccccccccccccccC-CCCccchhHHHHHhhhccchheeeeecccccccccc---chhhhhhcccc
Confidence 9887665533 44567888887766443 34457888887776 457899999999999999999 55556655544
Q ss_pred C-CEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCccc-ccccceeeEEEcCHHHHHHHHHHh----------
Q 012124 260 P-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ---------- 327 (470)
Q Consensus 260 ~-~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~---------- 327 (470)
. ++++++|.+.+. +..+..+.. .+-.+++.|-.|.+ |.+| +|+++..+++++.+....
T Consensus 165 ~~~~~~~vDa~qs~----g~~pid~~~----~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~ 234 (382)
T d2bkwa1 165 SPETFFVVDAVCSI----GCEEFEFDE----WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFS 234 (382)
T ss_dssp CTTSEEEEECTTTT----TTSCCCTTT----TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTT
T ss_pred ccceeeeeeccccc----ccccccccc----cCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchh
Confidence 1 599999999875 222222222 34558999999998 5455 899999988776542111
Q ss_pred ----------------hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecC---CC--
Q 012124 328 ----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE---PQ-- 386 (470)
Q Consensus 328 ----------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~---~~-- 386 (470)
......++.....++..+|+.- .++......++.++.++.+.+.+.+..+..... +.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 312 (382)
T d2bkwa1 235 SLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMS 312 (382)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTB
T ss_pred hhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhcc
Confidence 1122345555666666666531 123456666777777888888877654443321 11
Q ss_pred -ceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-CCCCcEEEE-eec--CHHHHHHHHHHHHHHH
Q 012124 387 -GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF-GDDTCIRIS-YAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 387 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-~~~~~iRls-~~~--~~~~i~~~l~~l~~~l 461 (470)
.++ +.+.+| +..++.+.|. ++||.+.+|..- -.++.||++ ++. ++++++..++.|+.+.
T Consensus 313 s~~v-~~~~~~--------------~~~~~~~~L~-~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 313 AHGL-TAVYVA--------------DPPDVIAFLK-SHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp CSSC-EEEECS--------------CHHHHHHHHH-HTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred CCcE-EEEcCC--------------CHHHHHHHHH-HCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 122 334554 4567777664 569999988542 234679999 443 4566666666666655
Q ss_pred HhhCC
Q 012124 462 LTLRP 466 (470)
Q Consensus 462 ~~~~~ 466 (470)
+.+++
T Consensus 377 ~~L~~ 381 (382)
T d2bkwa1 377 LALQR 381 (382)
T ss_dssp HHTTC
T ss_pred HHHCc
Confidence 55553
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=5.2e-17 Score=160.94 Aligned_cols=313 Identities=18% Similarity=0.176 Sum_probs=193.9
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChH-HHHHHHHHHh---cCCCCeEEEcCCCCCChHHHHHHcCCEEEEecCc
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 208 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~-~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 208 (470)
...+...+.+++.+.+|.+... ..++|+|++ .++.+++.++ ..+++.|+++...|++....+..+|++++.|+..
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~-~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~ 170 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 170 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHhCCCccc-CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEee
Confidence 3467777888888888875443 445555555 4554444443 3567899999999999999999999999888753
Q ss_pred C-CCCCccCHHhHhhhcc----CCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEecccccccc-CCCCccc
Q 012124 209 I-SENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-APATHTS 282 (470)
Q Consensus 209 ~-~~~~~~d~~~l~~~l~----~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~-~~~~~~~ 282 (470)
. ++.+.+|+++|+++++ +++.+|+++.|+|++|.+.+ +++|+++|++| |+++++|++|+.... .......
T Consensus 171 ~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~ 246 (445)
T d3bc8a1 171 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQ 246 (445)
T ss_dssp EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHH
T ss_pred ccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHh-CCcEEEEccchhhhhhccccchh
Confidence 2 3457799999999884 36778888999999999998 88999999999 999999999985321 1100011
Q ss_pred ccccCCCCCceEEEeccCcccccccceeeEEEc-CHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Q 012124 283 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 361 (470)
Q Consensus 283 ~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 361 (470)
...+ .+-.++..|.+|.++.| ...|+++. +.++.+.+.........+.+...+.+....+. ........+
T Consensus 247 ~~~~---~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~ 317 (445)
T d3bc8a1 247 GARV---GRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG-----CSGYRKLLK 317 (445)
T ss_dssp HHHH---SCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred ccCc---CCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh-----hhcchhhHH
Confidence 1111 12337788899988634 34566655 56666666554433333333333433333332 233444444
Q ss_pred HHHHHHHHHHHHhccC---CCCeec-CCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEE----ECCC--
Q 012124 362 AFRERRDFLVKSFGEL---EGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVAL----VPGD-- 431 (470)
Q Consensus 362 ~~~~~~~~l~~~L~~~---~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v----~pg~-- 431 (470)
....+.+++.+.|.++ .|..+. .+......++.+..... ....+..++...|.+. ||.. .++.
T Consensus 318 ~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~------~~~~~~~~l~~~L~~~-gI~~~~~~~~~~~~ 390 (445)
T d3bc8a1 318 ERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG------HHDKAVTQLGSMLFTR-QVSGARAVPLGNVQ 390 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS------SSSCHHHHHHHHHHHT-TCCSCEEECSCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc------cCCCCHHHHHHHHHHc-CCCcceeecccccc
Confidence 4455555555555442 133332 23333334433322100 0112456677777654 6521 1111
Q ss_pred -----C---CC------CCCcEEEEeec--CHHHHHHHHHHHHHHHHhhCC
Q 012124 432 -----A---FG------DDTCIRISYAA--SLTTLQAAVERIKKGLLTLRP 466 (470)
Q Consensus 432 -----~---f~------~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~~~ 466 (470)
. |+ ...++|++++. +++||+.++++|++++++++.
T Consensus 391 ~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 391 TVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp EETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0 11 12468998885 889999999999999998753
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.73 E-value=6.7e-16 Score=144.71 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~ 210 (470)
.|.+.+++.- ..+..+++++++.|+..++..++++||+|++.++.|.+.... ++..|.++..++.
T Consensus 2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~--- 70 (331)
T d1pffa_ 2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecc---
Confidence 4666677663 346789999999999999999999999999999999876654 5678999988875
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHH-HhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~-~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
-|++.+++++++++++|++.+|.||+..+.+ ++++++++ +++ ++++|+|+++....+. ..++
T Consensus 71 ----~d~~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~-~~~~vVDnT~atp~~~-------~pl~-- 133 (331)
T d1pffa_ 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILT-------NPLD-- 133 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHC-------CGGG--
T ss_pred ----cchhhHhhhcccccceeeeeccccccccccc---chhhhhhhhccc-CceEEeeccccccccc-------cccc--
Confidence 2789999999999999999999999999999 66667764 567 8999999999742211 1111
Q ss_pred CCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHH--HhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~--~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+-.|++.|.+|.++ -...=.|.++..++....... .......+.++.....+..-++. +..+.++..++
T Consensus 134 ~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~~Rm~~~~~n 206 (331)
T d1pffa_ 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-------LDMRVKRAAEN 206 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 344599999999984 233445788888776655443 23334556777766555554443 44455556677
Q ss_pred HHHHHHHhccCCCC
Q 012124 367 RDFLVKSFGELEGV 380 (470)
Q Consensus 367 ~~~l~~~L~~~~g~ 380 (470)
...+.+.|++.|.+
T Consensus 207 A~~lA~~L~~hp~V 220 (331)
T d1pffa_ 207 AQKVAEFLHEHKAV 220 (331)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHhhhhCCcE
Confidence 77788888877665
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.2e-15 Score=150.14 Aligned_cols=358 Identities=11% Similarity=0.011 Sum_probs=238.4
Q ss_pred HhcCCCeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCC---cEEEecChHHH
Q 012124 90 AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD---QILVSNGAKQS 166 (470)
Q Consensus 90 ~~~~~~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~---~i~it~g~~~a 166 (470)
..+|.+.++|....... .++.+.+.+.+.+..+...+...+...++...+.+++.+.+|.+...+ .=.+|+|+++|
T Consensus 49 ~~dg~~~~n~asf~~t~-~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA 127 (450)
T d1pmma_ 49 YLDGNARQNLATFCQTW-DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEA 127 (450)
T ss_dssp GGSCCGGGBCSCCSCCC-CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHH
T ss_pred ccCCCccccccccccCC-CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHH
Confidence 34565555665554332 356777788887777666665566778999999999999999763322 24899999999
Q ss_pred HHHHHHHhc-----------CCC-CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEc
Q 012124 167 ILQAVLAVC-----------SPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC 234 (470)
Q Consensus 167 l~~~~~~l~-----------~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~ 234 (470)
+.+.+.+.. .++ ..+++....+.++...++.+|++++.||++++ ++.+|++.|++++++++.+|+.+
T Consensus 128 ~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~-~~~~d~~~L~~~i~~~t~~Vv~t 206 (450)
T d1pmma_ 128 CMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPG-QLFMDPKRMIEACDENTIGVVPT 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTT-BCSCCHHHHHHHCCTTEEEEECB
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCC-CCcCcHHHHHHHhhhCceEEEee
Confidence 998776642 122 35777778888889999999999999999754 46799999999999999999999
Q ss_pred CCCCCcccCCCHHHHHHHHH---HHHhCCCEEEEEeccccccc--cCCCCcccccccCCCCCceEEEeccCcccccccce
Q 012124 235 SPSNPTGSVYPKNLLDEIAR---IVAKHPRLLVLSDEIYEHII--YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 309 (470)
Q Consensus 235 ~p~nPtG~~~s~~~~~~l~~---~~~~~~~~~iI~Dd~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 309 (470)
..++.||.+-+.+.+.+|++ .|+++ |+|+.+|.+|+.+. +..........+ ..-..+..|.+|.+. ....
T Consensus 207 ~gtt~tG~~dpv~~i~~i~~~~~~a~~~-~i~lHVDAA~gG~~~p~~~~~~~~~~~~---~~aDSi~~s~HK~~~-~p~g 281 (450)
T d1pmma_ 207 FGVTYTGNYEFPQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPDIVWDFRL---PRVKSISASGHKFGL-APLG 281 (450)
T ss_dssp BSCTTTCBBCCHHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTTC-CCSS
T ss_pred eeeccCCCccccchhhHHHHHHHHHhcc-CcEEEeehhhccceeeeechhhhhhhcc---cceeEeecChhhccC-CCCC
Confidence 99999999999776665554 46789 99999999998643 222111111111 244567788999875 5567
Q ss_pred eeEEEcCHHH-HHHHHHH--------hhhccC--CCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 310 LGYIAGPKHF-VAACNKI--------QSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 310 ~G~~~~~~~~-~~~l~~~--------~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
+||++....- ....... ....+. +-+......+...+.. ++.+.++++.++..+..+++.+.|++.+
T Consensus 282 ~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~--~G~~G~~~~~~~~~~la~~l~~~L~~~~ 359 (450)
T d1pmma_ 282 CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLR--LGREGYTKVQNASYQVAAYLADEIAKLG 359 (450)
T ss_dssp CEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8999876432 1111000 000111 1121222222222221 1356688888888999999999999998
Q ss_pred CCeecCC---Cce-EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCC----CCCCcEEEEeec--CHH
Q 012124 379 GVKMSEP---QGA-FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAF----GDDTCIRISYAA--SLT 448 (470)
Q Consensus 379 g~~~~~~---~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f----~~~~~iRls~~~--~~~ 448 (470)
++++..+ ..+ ..+.+++.+.. . ...+..++..+|.++ |..|.. ..+ .....+|+.+.. +.+
T Consensus 360 ~~el~~~~~p~~~l~~V~Fr~~~~~---~----~~~~~~~l~~~L~~~-Gw~v~~-~~~p~~~~~~~~lRvvv~~~~t~e 430 (450)
T d1pmma_ 360 PYEFICTGRPDEGIPAVCFKLKDGE---D----PGYTLYDLSERLRLR-GWQVPA-FTLGGEATDIVVMRIMCRRGFEMD 430 (450)
T ss_dssp CEEEEEECCTTTBSSEEEEEECTTC---C----CSSCHHHHHHHHHTT-TCBCCE-EECCTTCTTCEEEEEECCTTCCHH
T ss_pred CeEEEeCCCCCCceEEEEEecCCcc---c----CCCCHHHHHHHHHHc-CCeeec-cCcCCCcCCcEEEEEEccCCCCHH
Confidence 8877532 222 12445554320 0 011667888888765 765421 111 112469999986 889
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012124 449 TLQAAVERIKKGLLTLR 465 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~~ 465 (470)
+++++++.|++++++++
T Consensus 431 ~~d~lv~dl~~~v~~l~ 447 (450)
T d1pmma_ 431 FAELLLEDYKASLKYLS 447 (450)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998875
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.73 E-value=3.6e-16 Score=147.06 Aligned_cols=335 Identities=15% Similarity=0.112 Sum_probs=221.3
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-CCC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-FTR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+.|+|-..++- .++.+.+++...+.+. ..+ |+-..-..++.....++..+.||. ..-+|-.. +++.|.
T Consensus 24 ~~l~LiaSEN~--~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a--~~anVqp~-SGs~An 98 (405)
T d1kl1a_ 24 AKIELIASENF--VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPH-SGAQAN 98 (405)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC--SEEECCCS-SHHHHH
T ss_pred cCceEeccCCc--CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC--Ccceeecc-CchHHH
Confidence 44778766654 3577777777777542 222 322223334444445677777774 22344444 455566
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHH-----HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.+|++|||+|+..++...++.. .+.....+.+.++++++ ++.+|.|++++.++ .++++|++-.-.+|-
T Consensus 99 ~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~S~y~r- 176 (405)
T d1kl1a_ 99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLHRPKLIVAAASAYPR- 176 (405)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSEEEECCSSCCS-
T ss_pred HHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhhCcceEEeccccccc-
Confidence 77899999999999998876655442 23345578888999865 45799999999885 489998876666653
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 320 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~ 320 (470)
.++ ++++.++|++. |.+++.|-+|.. |.-++.-+.|+ .. -.++.+|..|+| +|-|-|.++...++.
T Consensus 177 -~~d---~~~~reIad~v-ga~l~~D~aH~~GLIa~g~~~~P~-~~-----aDvvt~tThKtl--rGPrgg~I~~~~~~~ 243 (405)
T d1kl1a_ 177 -IID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHPNPV-PY-----AHFVTTTTHKTL--RGPRGGMILCQEQFA 243 (405)
T ss_dssp -CCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST-TT-----CSEEEEESSSTT--CCCSCEEEEECHHHH
T ss_pred -ccC---hHHHHHHHhhh-CCEEecchhhHhhhhhhhhcCChh-hh-----hhheeccccccc--cCCCCceEEecchhH
Confidence 456 77888888899 999999999764 44333322233 22 237788999997 788999999999999
Q ss_pred HHHHHHhhhccCCCChHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeeccCc
Q 012124 321 AACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTY 398 (470)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~q~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~~~ 398 (470)
+.+.+...+...+.+.+.+.|+.+ ++... .....+...++..++.+.|.+.|.+. |+.+... ..+..+|+++...
T Consensus 244 ~~i~~avfPg~qggp~~~~iAa~Aval~Ea--~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHhhhCcccccCcchhHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeecccccc
Confidence 998877665554444444444332 23211 12334556666777888888888887 8888642 3345578888542
Q ss_pred cCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCC--CCCCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012124 399 YGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDA--FGDDTCIRISYAA------SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~--f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~~ 463 (470)
+ .+. ..+++++++.||.+. |+.. ...+..|||+... .++++.+..+-|.++++.
T Consensus 321 -~---------~~g-~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 321 -Q---------LTG-KTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp -T---------CCH-HHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred -C---------CcH-HHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 1 134 444556677899886 3321 1124689999753 779999999998888854
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.73 E-value=6.2e-15 Score=140.96 Aligned_cols=217 Identities=14% Similarity=0.157 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcC
Q 012124 134 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 209 (470)
Q Consensus 134 ~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~ 209 (470)
.+-++.+.+.+...-| .+..+++++++.|+..++.+++++||.|++.+..|.+.... +...|.++..++.
T Consensus 58 nPT~~~le~~la~LEg----~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~-- 131 (394)
T d1e5ea_ 58 NPTVSNLEGKIAFLEK----TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINT-- 131 (394)
T ss_dssp CHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred CHHHHHHHHHHHHHhC----CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCC--
Confidence 3455555555554333 35788899999999999999999999999999999776543 5678999988875
Q ss_pred CCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCC
Q 012124 210 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 289 (470)
Q Consensus 210 ~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~ 289 (470)
-|++.+++++++++++|++.+|.|||..+.+ ++++++.++++.++++|+|+++..-.+ ..+ +.
T Consensus 132 -----~d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~----~~P---l~-- 194 (394)
T d1e5ea_ 132 -----AIPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMI----TNP---VD-- 194 (394)
T ss_dssp -----TSTTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTT----CCG---GG--
T ss_pred -----CCHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCccc----CCc---hh--
Confidence 2778999999999999999999999999999 777777665532899999999864111 111 11
Q ss_pred CCceEEEeccCcccc-cccceeeEEEcCHHHHHHHHHH--hhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 012124 290 WERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 366 (470)
Q Consensus 290 ~~~~i~i~S~sK~~~-~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 366 (470)
.+-.|++.|.+|.++ -...=.|.++++.+.....+.. +.....+.+++....+..-|+. +.-+.++..++
T Consensus 195 ~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-------L~lRm~r~~~n 267 (394)
T d1e5ea_ 195 FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-------LNIRMKAESEN 267 (394)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred cCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-------HHHHHHHHHHH
Confidence 345699999999984 2334467788888877765432 3345666788876666666654 44455556777
Q ss_pred HHHHHHHhccCCCC
Q 012124 367 RDFLVKSFGELEGV 380 (470)
Q Consensus 367 ~~~l~~~L~~~~g~ 380 (470)
...+.+.|++.|.+
T Consensus 268 A~~lA~~L~~hp~V 281 (394)
T d1e5ea_ 268 AMKVAEYLKSHPAV 281 (394)
T ss_dssp HHHHHHHHHTCTTE
T ss_pred HHHHHHHHhhcCCc
Confidence 88888888887665
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.72 E-value=4.1e-16 Score=153.24 Aligned_cols=355 Identities=11% Similarity=0.052 Sum_probs=212.4
Q ss_pred cCCCeEEccCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 92 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 92 ~~~~~i~l~~g~--~~~~~-~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+|+.+||+..|. ..+.. ++.+.+++.+++.+..+. ......+.+..+++.|.+.... ..+.+++++++++|.+
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~--~~~~~~~~~~~la~~L~~~~~~--~~~~v~f~~sGseA~e 114 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL--FSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 114 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC--CTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccc--ccccccHHHHHHHHHHHHhCCc--ccceeeecccccchHH
Confidence 677899998874 44444 799999999999864321 2222334555677777654432 3479999999999999
Q ss_pred HHHHHh--cCCCCeEEEcCCCCCChHHHHHHcCC------------EEEEecCcCCC-------CCcc---CHHhHhhhc
Q 012124 169 QAVLAV--CSPGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRISE-------NFLL---DPKVLESKL 224 (470)
Q Consensus 169 ~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~~~-------~~~~---d~~~l~~~l 224 (470)
.+++.. ....+.|+..+-+|++........+. ....++..... .... +++.+...+
T Consensus 115 ~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (431)
T d1zoda1 115 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194 (431)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHH
Confidence 999874 22347888888999987755443221 11222221100 0001 122332222
Q ss_pred ----cCCceEEEEcCCCCCccc-CCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEec
Q 012124 225 ----TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNG 298 (470)
Q Consensus 225 ----~~~~~~i~l~~p~nPtG~-~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S 298 (470)
.+++.++++...+.-.|. ..|++.+++|.++|++| |+++|.||++..+...+... .....+.++ +-+
T Consensus 195 ~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~-gillI~DEV~tG~gRtG~~~~~~~~gv~PD------i~~ 267 (431)
T d1zoda1 195 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTMFACQRDGVTPD------ILT 267 (431)
T ss_dssp HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSSTHHHHTCCCS------EEE
T ss_pred HHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc-CceEEeccccccccccccccccccCCCCcc------hhc
Confidence 235566666444433454 57999999999999999 99999999999853333211 111223332 555
Q ss_pred cCcccccccceeeEEEcCHHHHHHHHHHh--hhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 012124 299 FSKAFAMTGWRLGYIAGPKHFVAACNKIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 376 (470)
Q Consensus 299 ~sK~~~~~G~r~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 376 (470)
++|.++ .|+.++.+++.+++.+...... ...+++.++++..++.+.|+.-.. +..+++..+.-+...+.+.+.+.+
T Consensus 268 ~gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~ 345 (431)
T d1zoda1 268 LSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR-DGLVARANVMGDRLRRGLLDLMER 345 (431)
T ss_dssp ECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhhhhhhhhc
Confidence 889998 8999999999998887765432 335677889888888777663111 333444443333344444444444
Q ss_pred CCCCeecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHH
Q 012124 377 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAV 454 (470)
Q Consensus 377 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l 454 (470)
.+-+.-.. .-|+++-+++......... .......+.+.++++ |+....-..-...+.||++... ++++|++++
T Consensus 346 ~~~i~~vr-G~Glm~~ie~~~~~~~~~~---~~~~~~~i~~~~~~~-Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~ 420 (431)
T d1zoda1 346 FDCIGDVR-GRGLLLGVEIVKDRRTKEP---ADGLGAKITRECMNL-GLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGL 420 (431)
T ss_dssp CTTEEEEE-EETTEEEEEEEEETTTTEE---CTTHHHHHHHHHHHT-TEECCEECCTTSCCEEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEe-ecceEEEEEEecCCcccCc---cHHHHHHHHHHHHHh-CcccCeeeecCCCCEEEEECCCCCCHHHHHHHH
Confidence 43222122 2244344444211000000 000245677777765 7753211111235689998664 999999999
Q ss_pred HHHHHHHHhh
Q 012124 455 ERIKKGLLTL 464 (470)
Q Consensus 455 ~~l~~~l~~~ 464 (470)
++|+++++++
T Consensus 421 ~~l~~al~~v 430 (431)
T d1zoda1 421 SLLGQAIERA 430 (431)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.7e-15 Score=143.20 Aligned_cols=335 Identities=15% Similarity=0.067 Sum_probs=218.9
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-CCC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-FTR------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
+-|+|-..++- .++.+.+++...+.+. ..+ |+..+-..++.....++..+.||. ...+|-. .+++.|.
T Consensus 27 ~~i~LiaSEN~--~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--~~anVqp-~SGs~AN 101 (416)
T d1dfoa_ 27 EHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--DYANVQP-HSGSQAN 101 (416)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCC-SSHHHHH
T ss_pred cCceEecCccc--CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--Ccceeec-ccCccHH
Confidence 34777766654 3677777777776542 222 222222344444445666677774 2234444 4556677
Q ss_pred HHHHHHhcCCCCeEEEcCCCCCChHHH-----HHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcCCCCCcc
Q 012124 168 LQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 241 (470)
Q Consensus 168 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~p~nPtG 241 (470)
..++.+|++|||+|+..+....++... +.....+.++++++.+ ..+|.|.+++.+. .++|+|+...-.+|
T Consensus 102 ~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~--~~IDyd~l~~~a~~~kPklIi~G~S~y~-- 177 (416)
T d1dfoa_ 102 FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDAT--GHIDYADLEKQAKEHKPKMIIGGFSAYS-- 177 (416)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSS--SSBCHHHHHHHHHHHCCSEEEEECSSCC--
T ss_pred HHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCc--cCccHHHHHHHHHHhccceEEecccccc--
Confidence 778999999999999998887776432 3344568888888743 3499999999884 48999987655555
Q ss_pred cCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcC---HH
Q 012124 242 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KH 318 (470)
Q Consensus 242 ~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~---~~ 318 (470)
..++ ++++.++|.+. |.+++.|.+|......+...++.... -.++.+|++|+| +|-|-|.+... ++
T Consensus 178 r~~d---~~~~reiad~v-ga~l~~D~aH~~GLIa~g~~~sP~~~-----aDvvt~tThKtl--rGPrggiI~~~~~~~~ 246 (416)
T d1dfoa_ 178 GVVD---WAKMREIADSI-GAYLFVDMAHVAGLVAAGVYPNPVPH-----AHVVTTTTHKTL--AGPRGGLILAKGGSEE 246 (416)
T ss_dssp SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCCTTT-----SSEEEEESSSTT--CCCSCEEEEESSCCHH
T ss_pred cccC---HHHHHHHHHhc-CceEEcchhhhhcceeccccCCcccc-----cceeeeehhhcc--cCCCceEEEeccchHh
Confidence 4566 77888888899 99999999987432222223332222 238899999997 78888999975 67
Q ss_pred HHHHHHHHhhhccCCCChHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC-CceEEEeeecc
Q 012124 319 FVAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFS 396 (470)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~q~a~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~g~~~~~~~~ 396 (470)
+.+++.+...+...+.+.+.+.|+ +.++... .....+...++..++.+.|.+.|.+. |+++... ..+..+++++.
T Consensus 247 ~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea--~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~ 323 (416)
T d1dfoa_ 247 LYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA--MEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLV 323 (416)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhCcccccCccHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEec
Confidence 888887665555444444444433 3333321 13344566677778888999999887 8888632 33455778885
Q ss_pred CccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCC--CCCCCcEEEEeec------CHHHHHHHHHHHHHHHHh
Q 012124 397 TYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDA--FGDDTCIRISYAA------SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~--f~~~~~iRls~~~------~~~~i~~~l~~l~~~l~~ 463 (470)
+. + .+..+. +.++++.||.+. |+.. ...+..|||+... .++++++..+-|.++++.
T Consensus 324 ~~-~---------~~G~~a-~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 324 DK-N---------LTGKEA-DAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp GG-T---------CCHHHH-HHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred cc-C---------CCHHHH-HHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 42 1 134444 456677899875 3321 1124689999753 678999998888888764
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=7.8e-15 Score=140.83 Aligned_cols=217 Identities=14% Similarity=0.136 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHH----HHcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~ 210 (470)
+-++.+.+.+...-| .+..+++++++.|+..++.+++++||.|++.+..|.+....+ ...|.++..++..
T Consensus 58 PT~~~LE~~la~LE~----~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-- 131 (421)
T d2ctza1 58 PTVDVLEKRLAALEG----GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE-- 131 (421)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT--
T ss_pred HHHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccc--
Confidence 445555555544333 357889999999999999999999999999999998877654 5689998877642
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCC
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 290 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
-+.+..++.+++++++|++.+|.|||..+.+ +++|+++|+++ |+++|+|+.++.--+ ...+ +. .
T Consensus 132 ----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vvDnT~a~tP~---~~~P---l~--~ 195 (421)
T d2ctza1 132 ----ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMGGY---LLRP---LA--W 195 (421)
T ss_dssp ----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGGGT---SCCG---GG--G
T ss_pred ----cCcchhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhc-CCceEecccccccce---eccc---cc--c
Confidence 1456667778899999999999999999999 99999999999 999999999862000 0112 11 3
Q ss_pred CceEEEeccCccccccc-ceeeEEEcCHH-------------------------------HHHH-HHHHhhhccCCCChH
Q 012124 291 ERTLTVNGFSKAFAMTG-WRLGYIAGPKH-------------------------------FVAA-CNKIQSQFTSGASSI 337 (470)
Q Consensus 291 ~~~i~i~S~sK~~~~~G-~r~G~~~~~~~-------------------------------~~~~-l~~~~~~~~~~~~~~ 337 (470)
+-.|++.|.+|-++-.+ .=.|.++...+ ++.+ ..........+.+++
T Consensus 196 GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~ 275 (421)
T d2ctza1 196 GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPF 275 (421)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHH
T ss_pred CCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHH
Confidence 55599999999995333 33466664321 1111 112223356678888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 012124 338 SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 380 (470)
Q Consensus 338 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 380 (470)
....+..-|+. +.-+.++..++...+.+.|++.|.+
T Consensus 276 ~a~l~~rgl~T-------L~lRm~~~~~nA~~vA~~L~~hp~V 311 (421)
T d2ctza1 276 EAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQV 311 (421)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHhcCCcc-------hhhHHHHHHHHHHHHHhhhccCCCe
Confidence 87766666654 3444455566777788888876655
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.70 E-value=3.8e-14 Score=136.44 Aligned_cols=311 Identities=15% Similarity=0.139 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc-CCC--CeEEEcC
Q 012124 109 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPG--DEVIIPA 185 (470)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~-~~g--d~Vlv~~ 185 (470)
.++-++++.+.+..+... ..+-..++.+.+++++ | ..+++.+++++.|+.++++++- .+| |+|+++.
T Consensus 11 ~~~~~~~v~~~l~~~~~~--~G~~v~~fE~~~~~~~----g----~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 11 DKEDKKAVLEVLNSKQLT--QGKRSLLFEEALCEFL----G----VKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp CHHHHHHHHHHHTSSCCS--SSHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CHHHHHHHHHHHcCCCcc--CCHHHHHHHHHHHHHH----C----cCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccc
Confidence 355577888888665433 3334677888888876 3 3478999999999999999973 444 4899999
Q ss_pred CCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 186 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 186 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
.+|+.....+...|++++.++++++. .++.+.+++.+++++++|+++ +..|...+ +.+|.++|+++ +++||
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~~t~avi~v---h~~G~~~~---~~~i~~~~~~~-~i~lI 151 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSV---DYAGKSVE---VESVQKLCKKH-SLSFL 151 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHHHHH-TCEEE
T ss_pred ccccccceeeeccCcccccccccccc--cccchhhhhhccchhhccccc---cccccccc---ccccccccccc-chhhc
Confidence 99999999999999999999998654 367788999999999999865 45677777 77889999999 99999
Q ss_pred EeccccccccCCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhhc------------
Q 012124 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF------------ 330 (470)
Q Consensus 266 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~------------ 330 (470)
||.+++....-.. .....+ ..+.+.|| +|.++ .|- -|.++. .+++.+.+...+...
T Consensus 152 EDaaqa~Ga~~~~--~~~G~~-----g~~~~~Sf~~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (371)
T d2fnua1 152 SDSSHALGSEYQN--KKVGGF-----ALASVFSFHAIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVK 222 (371)
T ss_dssp EECTTCTTCEETT--EETTSS-----SSEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEES
T ss_pred cchhhccCceecc--ccCCcc-----ccccccccccccccc-ccc-ceEEEeechhhhhhcccccccccccccccccccc
Confidence 9999986332111 111122 12445556 79986 443 577665 467778777654322
Q ss_pred ----cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC----ce-EEEeeeccCccCC
Q 012124 331 ----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GA-FYLFIDFSTYYGS 401 (470)
Q Consensus 331 ----~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~g-~~~~~~~~~~~~~ 401 (470)
.+-.+.+....+...|+. +++..+.-++..+.+.+.|.+.+++....+. .. +.+.+.+.....
T Consensus 223 ~~G~n~r~sel~Aaigl~qL~~-------l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 294 (371)
T d2fnua1 223 SIGHNFRLNEIQSALGLSQLKK-------APFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF- 294 (371)
T ss_dssp SCCCBCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG-
T ss_pred cccccccccchhhhhhhhhhhh-------ccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccch-
Confidence 222444444444444443 3333333445556667778777666553221 11 112222322100
Q ss_pred cccCCCCCCCHHHHHHHHHHcCCEEEECCCCC-----------CCC----------CcEEEEeec--CHHHHHHHHHHHH
Q 012124 402 EAEGFGKIENSESLCRYLLDKAQVALVPGDAF-----------GDD----------TCIRISYAA--SLTTLQAAVERIK 458 (470)
Q Consensus 402 ~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-----------~~~----------~~iRls~~~--~~~~i~~~l~~l~ 458 (470)
..-+++.+.|.++ ||.+.+.... ... ..+.|-+.. ++++++..++.|.
T Consensus 295 --------~~r~~~~~~L~~~-gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~ 365 (371)
T d2fnua1 295 --------TCKKLILESLHKR-GILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVL 365 (371)
T ss_dssp --------GGHHHHHHHHHHT-TEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHC-CCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHH
Confidence 0335777877655 9988764321 001 246665554 8999999999999
Q ss_pred HHHHhh
Q 012124 459 KGLLTL 464 (470)
Q Consensus 459 ~~l~~~ 464 (470)
++++++
T Consensus 366 ~~~~~~ 371 (371)
T d2fnua1 366 KTFESF 371 (371)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 998753
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1.6e-14 Score=137.89 Aligned_cols=209 Identities=11% Similarity=0.109 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH----HcCCEEEEecCcCC
Q 012124 135 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRIS 210 (470)
Q Consensus 135 ~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~ 210 (470)
+-++.+.+.+....| .+..+++++++.|+..++ .++.+||.|++.+..|.+....+. ..|.++..++
T Consensus 55 PT~~~lE~~la~LE~----~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~---- 125 (393)
T d1n8pa_ 55 PNRENLERAVAALEN----AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN---- 125 (393)
T ss_dssp HHHHHHHHHHHHHTT----CSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES----
T ss_pred hHHHHHHHHHHHHhC----CceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee----
Confidence 455556666655433 356778888888987554 667899999999999998877655 3566665553
Q ss_pred CCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHH----hCCCEEEEEeccccccccCCCCccccccc
Q 012124 211 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASL 286 (470)
Q Consensus 211 ~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~----~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~ 286 (470)
.+.+++++++++++++|++.+|.||+..+.+ +++|+++|+ ++ |+++|+|+.+..-.+ ...+
T Consensus 126 ----~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~-g~~lvVDnT~atP~~-------~~Pl 190 (393)
T d1n8pa_ 126 ----DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQ-DVILVVDNTFLSPYI-------SNPL 190 (393)
T ss_dssp ----SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTT-TCEEEEECTTTHHHH-------CCGG
T ss_pred ----cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccC-CceEEEecCccCccc-------CCch
Confidence 2557899999999999999999999999999 777777777 77 899999999964211 1112
Q ss_pred CCCCCceEEEeccCcccc-cccceeeEEE-cCHHHHHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 012124 287 PGMWERTLTVNGFSKAFA-MTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 364 (470)
Q Consensus 287 ~~~~~~~i~i~S~sK~~~-~~G~r~G~~~-~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 364 (470)
+ .+-.|++.|.+|.++ -..+=.|.++ .+.++.+.++..+.......++.....+..-++. +.-+.++..
T Consensus 191 ~--~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T-------l~lR~~~~~ 261 (393)
T d1n8pa_ 191 N--FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRVRQAA 261 (393)
T ss_dssp G--GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred h--hCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc-------hhhHHHHHH
Confidence 1 345599999999984 2335567776 4677888898888888888898877666666654 333334445
Q ss_pred HHHHHHHHHhcc
Q 012124 365 ERRDFLVKSFGE 376 (470)
Q Consensus 365 ~~~~~l~~~L~~ 376 (470)
++...+.+.|+.
T Consensus 262 ~nA~~lA~~L~~ 273 (393)
T d1n8pa_ 262 LSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh
Confidence 566666677754
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.65 E-value=3.8e-15 Score=147.97 Aligned_cols=313 Identities=12% Similarity=0.026 Sum_probs=173.4
Q ss_pred cHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCeEEEcCCCCCChHHHHH-HcCCEEEEecC--cC
Q 012124 133 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPT--RI 209 (470)
Q Consensus 133 ~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~--~~ 209 (470)
+.++++.+|+++ |. .+-+++++|++.++..++.++++|||+|+++.-+|.+..+... ..+..++.++. ++
T Consensus 68 i~eae~~~A~~~----ga---~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 68 AVAAEKHAARVY----NA---DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp HHHHHHHHHHHT----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred HHHHHHHHHHHh----CC---CeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence 456777777774 42 2345556777788888888999999999999999988776544 34555544433 22
Q ss_pred CCC-C-----ccCHHh---------HhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccc
Q 012124 210 SEN-F-----LLDPKV---------LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 274 (470)
Q Consensus 210 ~~~-~-----~~d~~~---------l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~ 274 (470)
.+. . .++.+. ++++...+++.+++.+.+|-+|.+.+ +++|+++|+++ |++|++|++|+...
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~-g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHL-CDYIEFDSAWVGYE 216 (462)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGG-BSEEEEECTTCCGG
T ss_pred ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHc-CCEEEEechhhccc
Confidence 211 0 122222 23334445665665555667899999 88999999999 99999999987532
Q ss_pred c-CCCCccccccc----CCCCCceEEEeccCcccccccceeeEEE-cCHHHH---------HHHHHHhh-hccCCCChHH
Q 012124 275 Y-APATHTSFASL----PGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFV---------AACNKIQS-QFTSGASSIS 338 (470)
Q Consensus 275 ~-~~~~~~~~~~~----~~~~~~~i~i~S~sK~~~~~G~r~G~~~-~~~~~~---------~~l~~~~~-~~~~~~~~~~ 338 (470)
. .+....+.... ....+..+++.|++|+++.++ .|.++ .....+ +.+.+... ..+.+++...
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~ 294 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM 294 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHH
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHH
Confidence 2 21111111111 111245789999999997333 34444 332221 22332222 2233344443
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec-C---------------------------C-----
Q 012124 339 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-E---------------------------P----- 385 (470)
Q Consensus 339 q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~---------------------------~----- 385 (470)
...+..+...- .....++..+...++.+.+.+.+.++.+.... . +
T Consensus 295 ~asl~~a~~~~--~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (462)
T d1c4ka2 295 YAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWH 372 (462)
T ss_dssp HHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTT
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhc
Confidence 33333333210 13444555566666666777776654332110 0 0
Q ss_pred ------CceEE-----EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHH
Q 012124 386 ------QGAFY-----LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQA 452 (470)
Q Consensus 386 ------~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~ 452 (470)
...+. +.+..+......-.......+...+.+.|. ++||.+.- ...+.+|++++. ++++++.
T Consensus 373 ~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~-~~gI~~e~----~~~~~i~~~~s~~~T~edid~ 447 (462)
T d1c4ka2 373 AYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLR-DHGIIPEK----SDLNSILFLMTPAETPAKMNN 447 (462)
T ss_dssp CCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHH-HTTCCCSE----ECSSEEEEECCTTCCHHHHHH
T ss_pred cccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHH-HcCCeeec----cCCCeEEEEecCCCCHHHHHH
Confidence 00000 122222110000000000114566777665 56875421 234689999986 9999999
Q ss_pred HHHHHHHHHHhhC
Q 012124 453 AVERIKKGLLTLR 465 (470)
Q Consensus 453 ~l~~l~~~l~~~~ 465 (470)
.++.|+++.+.+.
T Consensus 448 li~aL~ei~r~~~ 460 (462)
T d1c4ka2 448 LITQLLQLQRLIE 460 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=3.2e-15 Score=148.75 Aligned_cols=339 Identities=12% Similarity=0.036 Sum_probs=197.7
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 175 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l~ 175 (470)
+|||-+..........++ .....+...|+..+...+|.+.+++++ | .+.++.++++++|...++.+++
T Consensus 43 ~idl~sd~~t~~~~~~~~----a~~~~gd~~Y~~~~~~~~le~~~a~l~----G----~~~~~~~~sGt~A~~~a~~~~~ 110 (467)
T d2v1pa1 43 FIDLLTDSGTGAVTQSMQ----AAMMRGDEAFSGSRSYYALAESVKNIF----G----YQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp SEECSCCTTCSCCCHHHH----HHTTSCCCCSSSCHHHHHHHHHHHHHT----C----CSEEEEECSSTTTHHHHHHHHH
T ss_pred eeeccccccchhhHHHHH----hhccccchhhcCCchHHHHHHHHHHHH----C----CCEEEECCCCHHHHHHHHHHHh
Confidence 456555444333333333 333345567888888888888888875 3 3578889999999999999988
Q ss_pred CCCCeEEEcC---------CCCCChHHHHHHcCCEEEEecCcCC--------CCCccCHHhHhhhccC----CceEEEEc
Q 012124 176 SPGDEVIIPA---------PFWVSYPEMARIADATPVILPTRIS--------ENFLLDPKVLESKLTE----KSRLLILC 234 (470)
Q Consensus 176 ~~gd~Vlv~~---------p~y~~~~~~~~~~g~~~~~v~~~~~--------~~~~~d~~~l~~~l~~----~~~~i~l~ 234 (470)
++||.+++.. ..|......+...|+.++.++.+.. ....+|++.|++.+++ .++++++.
T Consensus 111 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e 190 (467)
T d2v1pa1 111 KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190 (467)
T ss_dssp HHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEE
T ss_pred hccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeec
Confidence 7776544333 3333344567789999998887532 1245899999998853 45667777
Q ss_pred CCCC-CcccCCCHHHHHHHHHHHHhCCCEEEEEecccccc----------ccCCCCccccc-ccCCCCCceEEEeccCcc
Q 012124 235 SPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI----------IYAPATHTSFA-SLPGMWERTLTVNGFSKA 302 (470)
Q Consensus 235 ~p~n-PtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~----------~~~~~~~~~~~-~~~~~~~~~i~i~S~sK~ 302 (470)
..+| ..|.+++.+++++|.++|++| |+++|+|+++... .|.+.....+. .+. ....++..|.+|.
T Consensus 191 ~~~~~~gg~~~~~~~l~~i~~ia~~~-g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~d~~s~s~~K~ 267 (467)
T d2v1pa1 191 ITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY--KYADMLAMSAKKD 267 (467)
T ss_dssp SSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG--GGCSEEEEESSST
T ss_pred ceeeccccccCCHHHHHHHHHHHHHc-CCEEEEechhhhccccccccccccccCCcccccchhhc--ccCCEEEecCCCC
Confidence 7766 456888999999999999999 9999999997521 11111111100 011 1223566678887
Q ss_pred cccccceeeEEEcCHHHHH-HHHHHhh--------hccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 012124 303 FAMTGWRLGYIAGPKHFVA-ACNKIQS--------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 373 (470)
Q Consensus 303 ~~~~G~r~G~~~~~~~~~~-~l~~~~~--------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (470)
++ +...|++...++.+. .....+. ....+.......++...+.... ..++.++ ..++.+++.+.
T Consensus 268 ~~--~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~l~~~ 340 (467)
T d2v1pa1 268 AM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWLAY----RIAQVQYLVDG 340 (467)
T ss_dssp TC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CHHHHHH----HHHHHHHHHHH
T ss_pred CC--CCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhh-hHHHHHH----HHHHHHHHHHH
Confidence 75 334577776554332 2221111 1112233333334344343321 1333333 34556667777
Q ss_pred hccCCCCeecCCCce-EEEe--eeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC-------------CCCCC
Q 012124 374 FGELEGVKMSEPQGA-FYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA-------------FGDDT 437 (470)
Q Consensus 374 L~~~~g~~~~~~~~g-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~-------------f~~~~ 437 (470)
|.+. +..+.++... .++. ..++.... .......+...|+.+.||....... +....
T Consensus 341 L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~ 412 (467)
T d2v1pa1 341 LEEI-GVVCQQAGGHAAFVDAGKLLPHIPA-------DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE 412 (467)
T ss_dssp HHHT-TCCEEEECSSCEEEEHHHHSTTSCG-------GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCC
T ss_pred HHhc-CCcccCCCccceeecchhhcCCcch-------hhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcc
Confidence 7765 4444332222 2221 11222110 0013345555666677885432111 11235
Q ss_pred cEEEEeec---CHHHHHHHHHHHHHHHHhh
Q 012124 438 CIRISYAA---SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 438 ~iRls~~~---~~~~i~~~l~~l~~~l~~~ 464 (470)
.+||++.. ++++|+.+++.|++++++.
T Consensus 413 ~vRlaip~~~~T~eeiD~vv~~l~~v~~~~ 442 (467)
T d2v1pa1 413 LLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp EEEECCCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 79998763 8999999999999998753
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.64 E-value=7.1e-14 Score=134.01 Aligned_cols=337 Identities=15% Similarity=0.117 Sum_probs=218.2
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcC-C------CCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEE-ecChHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREG-F------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQS 166 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~------~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~i-t~g~~~a 166 (470)
..|+|-..++- .++.+.+++...+.+. . ..|+-..-..++.....++..+.||.+.+...+-+ ..+++.|
T Consensus 32 ~~l~LIaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~A 109 (470)
T d1rv3a_ 32 VGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 109 (470)
T ss_dssp SSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEecCCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccH
Confidence 44777766654 4677787777777542 1 12333333445555556777788886433333322 3466777
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHH----------HHHHcCCEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPE----------MARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCS 235 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~----------~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~ 235 (470)
...++.+|++|||+|+..+....++.. .+.....+.+.++++++. ..+|.|++++..+ .++++|+.-.
T Consensus 110 n~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~-~~IDyd~l~~~a~~~kPklIi~G~ 188 (470)
T d1rv3a_ 110 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT-GYIDYDRLEENARLFHPKLIIAGT 188 (470)
T ss_dssp HHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT-CSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEeccc-CcccHHHHHHHHHhhCcceEeech
Confidence 888899999999999987765444321 122334678899998654 4599999999885 4899988766
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
-.+| ..++ .+++.++|.+. |.+|+.|-+|-. |.-++.-+.|+ ... .|+.+|.+|+| +|-|-|.+.
T Consensus 189 S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sPl-~~a-----Dvvt~tTHKtl--rGPrgGiI~ 254 (470)
T d1rv3a_ 189 SCYS--RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPF-EHC-----HVVTTTTHKTL--RGCRAGMIF 254 (470)
T ss_dssp SSCC--SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGG-GTC-----SEEEEESSGGG--CCCSCEEEE
T ss_pred hhcc--ccCC---HHHHHHHHhcc-CCeEEecchhhhhhccccccCChh-hee-----eeeeeehhhhc--cCCcceEEE
Confidence 6665 3556 77888888899 999999999764 33333322333 222 38899999997 788889988
Q ss_pred cCH---------------HHHHHHHHHhhhccCCCChHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 315 GPK---------------HFVAACNKIQSQFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 315 ~~~---------------~~~~~l~~~~~~~~~~~~~~~q~a~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
..+ ++.+++.+...+...+.+-+.+.|+. .++... .....++..++...+.+.|.+.|.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea--~~~~fk~Ya~qvv~NAk~La~~L~~~- 331 (470)
T d1rv3a_ 255 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSAALVEL- 331 (470)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 754 37777877665444444444444333 333321 12334566667777888888888887
Q ss_pred CCeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE----CCCCC-CCCCcEEEEeec------C
Q 012124 379 GVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV----PGDAF-GDDTCIRISYAA------S 446 (470)
Q Consensus 379 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~----pg~~f-~~~~~iRls~~~------~ 446 (470)
|+.+.. ...+..+++++... + .+..+ +++++++.||.+. |+..- ..+..|||+... .
T Consensus 332 G~~v~~ggTdnHlvlvdl~~~-g---------~~g~~-ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~ 400 (470)
T d1rv3a_ 332 GYKIVTGGSDNHLILVDLRSK-G---------TDGGR-AEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 400 (470)
T ss_dssp TCEEGGGSCSSSEEEEEGGGG-T---------CCHHH-HHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred CceeccCCCCCceEEEeeccc-C---------CcHHH-HHHHHHHcCcEECCCcCCCCCCCCCCCeeEecCHHHHhCCCC
Confidence 887753 23345577787432 1 14444 4556678899875 44321 124689999752 7
Q ss_pred HHHHHHHHHHHHHHHH
Q 012124 447 LTTLQAAVERIKKGLL 462 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~ 462 (470)
++++.+..+-|.++++
T Consensus 401 e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 401 EKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888877764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.64 E-value=1.5e-14 Score=143.04 Aligned_cols=330 Identities=12% Similarity=0.050 Sum_probs=217.9
Q ss_pred hHHHHH-HHHHHHHcCCCCCCCCcCcHHHHHHHHHHHHHHcCCCC-------CCCcEEEecChHHHHHHHHHHhcC----
Q 012124 109 PVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY-------TPDQILVSNGAKQSILQAVLAVCS---- 176 (470)
Q Consensus 109 ~~~~~~-a~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~-------~~~~i~it~g~~~al~~~~~~l~~---- 176 (470)
++.+.. .+...+......|...+...++...+.+|+.+.+|.+- ....-++|+|++++....+.+..+
T Consensus 86 ~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~ 165 (476)
T d1js3a_ 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165 (476)
T ss_dssp HHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHH
Confidence 444444 44555555556666666778899999999999999752 123568999999888877755321
Q ss_pred ------CC---------CeEEEcCCCCCChHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCC------ceEEEEcC
Q 012124 177 ------PG---------DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 235 (470)
Q Consensus 177 ------~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~------~~~i~l~~ 235 (470)
+| -.|++.+-+|.+....+..+|..++.+|++ +++.+|++.|++.+++. +-+|+.+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~Vvata 243 (476)
T d1js3a_ 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATL 243 (476)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred hhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecC
Confidence 11 147788889999999999999999999986 45579999999999542 33455577
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCc-ccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
.++.||.+=| +++|+++|++| ++|+.+|.+|+.+....... ..+..+ ..-.-+..+++|.++ .....|+++
T Consensus 244 Gtt~~G~iDp---l~~I~~i~~~~-~~wlHVDAA~Gg~~~~~~~~~~~~~gi---~~aDSit~d~HK~l~-~P~~~g~~l 315 (476)
T d1js3a_ 244 GTTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFNPHKWLL-VNFDCSAMW 315 (476)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEECHHHHSS-CCSSCEEEE
T ss_pred CCccceeecc---HHHHHHHHHhc-CcEEEEecccchhhhhhcchhhhhcCC---cccceeeecCccccc-cCCcceeec
Confidence 8999999999 88999999999 99999999998754322211 112222 122345567899987 445678777
Q ss_pred cCH-HHHHH-H-------HHHhh---------hccC-CCC---hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 012124 315 GPK-HFVAA-C-------NKIQS---------QFTS-GAS---SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 372 (470)
Q Consensus 315 ~~~-~~~~~-l-------~~~~~---------~~~~-~~~---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (470)
... ..... + ..... .++. +.. .+...++...+ +.+.++++.+...+..+++.+
T Consensus 316 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~-----G~~g~~~~i~~~~~lA~~l~~ 390 (476)
T d1js3a_ 316 VKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY-----GVKGLQAYIRKHVQLSHEFEA 390 (476)
T ss_dssp ESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHH-----hHhHHHHHHHHHHHHHHHHHH
Confidence 653 22211 1 00000 0011 111 22222222222 256778888888889999999
Q ss_pred HhccCCCCeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec---CHH
Q 012124 373 SFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA---SLT 448 (470)
Q Consensus 373 ~L~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~---~~~ 448 (470)
.|++.|++++.. |..+. +.+++...- .-..++.++|.++..+.+.+.. .....++|++++. +++
T Consensus 391 ~l~~~~~fel~~~p~l~i-V~Fr~~~~d----------~~n~~l~~~l~~~G~~~~s~t~-~~g~~~lR~~i~n~~Tt~~ 458 (476)
T d1js3a_ 391 FVLQDPRFEVCAEVTLGL-VCFRLKGSD----------GLNEALLERINSARKIHLVPCR-LRGQFVLRFAICSRKVESG 458 (476)
T ss_dssp HHHHCTTEEECSCCCSSE-EEEEESSCH----------HHHHHHHHHHHHHTSCBCEEEE-ETTEEEEEEECCCTTCCHH
T ss_pred HHhcCCCeEEECCCceEE-EEEEccCCh----------HHHHHHHHHHHhcCCEEEeeee-ECCEEEEEEEeCCCCCCHH
Confidence 999998998764 45565 555664320 0235677777776445454422 1223479999873 788
Q ss_pred HHHHHHHHHHHHHHhhC
Q 012124 449 TLQAAVERIKKGLLTLR 465 (470)
Q Consensus 449 ~i~~~l~~l~~~l~~~~ 465 (470)
+++.+++.|+++.+++.
T Consensus 459 did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 459 HVRLAWEHIRGLAAELL 475 (476)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887753
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.63 E-value=1e-13 Score=133.64 Aligned_cols=314 Identities=15% Similarity=0.120 Sum_probs=190.7
Q ss_pred HHHHHHHHHcCCCC-CCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCeEEEcCCCCCC
Q 012124 113 AEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVS 190 (470)
Q Consensus 113 ~~a~~~~~~~~~~~-y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~ 190 (470)
++++.+.+..++.. .++ -...|.+.+++++ | ..+++.+++++.|+.++++++ +++||+|+++..+|+.
T Consensus 4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~----~----~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a 73 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYS----K----SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIA 73 (374)
T ss_dssp HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHH----C----CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG
T ss_pred HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHH----C----cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh
Confidence 46677777765432 333 3577888888876 3 247999999999999999998 7899999999999999
Q ss_pred hHHHHHHcCCEEEEecCcCCCCCccCHH--hHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEec
Q 012124 191 YPEMARIADATPVILPTRISENFLLDPK--VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 268 (470)
Q Consensus 191 ~~~~~~~~g~~~~~v~~~~~~~~~~d~~--~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd 268 (470)
....+...|++++.++++++. +..+.+ .+....++++++|++++ ..|...+ +.++.++|+++ +++||||.
T Consensus 74 ~~~~~~~~g~~pv~~Di~~~~-~~~~~~~~~~~~~~~~~~~aii~~~---~~G~~~d---~~~i~~~~~~~-~i~vIED~ 145 (374)
T d1o69a_ 74 SVAPICYLKAKPVFIDCDETY-NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DIVLIEDA 145 (374)
T ss_dssp GTHHHHHTTCEEEEECBCTTS-SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TCEEEEEC
T ss_pred hHHHHhhccceeEeccccccc-ccccccccccchhcccccccccccc---cccchhh---hHHHHHHhhcc-Ccchhhhh
Confidence 999999999999999997432 233444 33456677899888544 4566667 88899999999 99999999
Q ss_pred ccccccc-CCCCcccccccCCCCCceEEEecc--CcccccccceeeEEEc-CHHHHHHHHHHhhhc--------------
Q 012124 269 IYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF-------------- 330 (470)
Q Consensus 269 ~~~~~~~-~~~~~~~~~~~~~~~~~~i~i~S~--sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~-------------- 330 (470)
+++.... .+ ..+..+ ..+.+.|| +|.++ .|- -|.++. ++++++.+..++...
T Consensus 146 a~a~g~~~~~---~~~G~~-----gd~~~fSf~~~K~l~-tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~ 215 (374)
T d1o69a_ 146 AEALGSFYKN---KALGTF-----GEFGVYSYNGNKIIT-TSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY 215 (374)
T ss_dssp TTCTTCEETT---EETTSS-----SSEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred hhhhcceECC---eecCCC-----CceEEEeccCccccc-ccc-ceeehhhhHHHHHhhccccccccccccccccccCCc
Confidence 9886322 11 112222 23566667 58886 443 366554 577877776654322
Q ss_pred cCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCCC--ce---EEEeeeccCccCCcc--
Q 012124 331 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GA---FYLFIDFSTYYGSEA-- 403 (470)
Q Consensus 331 ~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~g---~~~~~~~~~~~~~~~-- 403 (470)
.+-.+.+....+..-|.. .+.++++. ++..+.+.+.|.+...+....+. .. +++.+.........+
T Consensus 216 N~rm~ei~Aaig~~qL~~---l~~~i~~r----~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 288 (374)
T d1o69a_ 216 NYRLSNVLGAIGVAQMEV---LEQRVLKK----REIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQK 288 (374)
T ss_dssp BCBCCHHHHHHHHHHHTT---HHHHHHHH----HHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCE
T ss_pred cccccchhhhhhHHHHhh---hhhhcchh----HHHHHHHHhhccccccccccccCCCCChhheeeeecccccccccccc
Confidence 223455544444454543 23333333 33444555666553211111111 11 111211110000000
Q ss_pred ------cCCCCCCCHHHHHHHHHHcCCEEEECCCCC-------C------CC-------CcEEEEeec--CHHHHHHHHH
Q 012124 404 ------EGFGKIENSESLCRYLLDKAQVALVPGDAF-------G------DD-------TCIRISYAA--SLTTLQAAVE 455 (470)
Q Consensus 404 ------~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f-------~------~~-------~~iRls~~~--~~~~i~~~l~ 455 (470)
.......+...+.+.|.++ ||.+++.... . .+ ..+.|-+.. ++++++..++
T Consensus 289 ~~~~~~~~~~~~~~r~~l~~~L~~~-gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~ 367 (374)
T d1o69a_ 289 DINISQKNITLHPKISKLIEDLKNK-QIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISK 367 (374)
T ss_dssp EEECCCCCCCCCHHHHHHHHHHHHT-TCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ccccchhhccchhhHHHHHHHHHHC-CCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHH
Confidence 0000001346688887655 8988764321 0 01 135555544 8999999999
Q ss_pred HHHHHHH
Q 012124 456 RIKKGLL 462 (470)
Q Consensus 456 ~l~~~l~ 462 (470)
.|.++++
T Consensus 368 ~I~~~lk 374 (374)
T d1o69a_ 368 LILKSIK 374 (374)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 9988864
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.63 E-value=3.1e-14 Score=136.05 Aligned_cols=335 Identities=14% Similarity=0.075 Sum_probs=200.8
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcC-CCC------CCCCcCcHHHHHHHHHHHHHHcCCCCCCC--cEEEecChHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREG-FTR------YTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQS 166 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~-~~~------y~~~~g~~~lr~~ia~~l~~~~g~~~~~~--~i~it~g~~~a 166 (470)
.|+|-..++- .++.+.+++...+.+. ..+ |+..+-..++.....++..+.|+...... +|-. .+++.|
T Consensus 29 ~l~LiaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp-~SGs~A 105 (463)
T d2a7va1 29 GLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQP-YSGSPA 105 (463)
T ss_dssp SEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCC-SSHHHH
T ss_pred CeeEeccCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccc-cccHHH
Confidence 3777766654 4677777777776542 222 33333455666666777778888643322 3333 455667
Q ss_pred HHHHHHHhcCCCCeEEEcCCCCCChHHH--------HHHcC--CEEEEecCcCCCCCccCHHhHhhhcc-CCceEEEEcC
Q 012124 167 ILQAVLAVCSPGDEVIIPAPFWVSYPEM--------ARIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCS 235 (470)
Q Consensus 167 l~~~~~~l~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~-~~~~~i~l~~ 235 (470)
...++.+|++|||+|+..++...++... ....| .+.+.+.++++ +..+|.|++++.+. .++++|++-.
T Consensus 106 n~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~kPklIi~G~ 184 (463)
T d2a7va1 106 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLFRPRLIIAGT 184 (463)
T ss_dssp HHHHHHHHCCSCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhcCCceEEecc
Confidence 7778999999999999877766554311 11122 34555666543 35699999999885 4899998766
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccc-cccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEE
Q 012124 236 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 314 (470)
Q Consensus 236 p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~-~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~ 314 (470)
-.+|- .++ ++++.++|++. |.+++.|-+|-. |.-++.-+.|+ ... .|+.+|..|+| +|-|-|.+.
T Consensus 185 S~y~r--~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sP~-~~a-----Dvvt~tTHKTl--rGPrgGiIl 250 (463)
T d2a7va1 185 SAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPF-KHA-----DIVTTTTHKTL--RGARSGLIF 250 (463)
T ss_dssp SSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGG-GTC-----SEEEEESSGGG--CSCSCEEEE
T ss_pred ccccc--ccC---HHHHHHHhhcc-cceEEechhhhhHHhhhhhhcChh-hhh-----hhhhchhhhhh--cCCCceEEE
Confidence 66653 456 77888888899 999999999764 33333322333 222 38888999997 788999988
Q ss_pred cCH---------------HHHHHHHHHhhhccCCCChHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 012124 315 GPK---------------HFVAACNKIQSQFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 378 (470)
Q Consensus 315 ~~~---------------~~~~~l~~~~~~~~~~~~~~~q~a~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 378 (470)
+.+ ++.+++.+...+...+.+-+.+.|+. .++... .....++..++..++.+.|.+.|.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea--~~~~fk~Ya~qVv~NAk~La~~L~~~- 327 (463)
T d2a7va1 251 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER- 327 (463)
T ss_dssp EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHhC-
Confidence 765 56777877655544444444443332 223211 12234455566667788888888877
Q ss_pred CCeecC-CCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCC-----CCCcEEEEeec------C
Q 012124 379 GVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFG-----DDTCIRISYAA------S 446 (470)
Q Consensus 379 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~-----~~~~iRls~~~------~ 446 (470)
|+++.. ...+..+++++...- .+.... +..+++.||.+.--...+ .++.|||+... .
T Consensus 328 G~~vv~ggTdnHlvlvdl~~~~----------~~G~~a-e~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~ 396 (463)
T d2a7va1 328 GYSLVSGGTDNHLVLVDLRPKG----------LDGARA-ERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR 396 (463)
T ss_dssp TCEEGGGSCSSSEEEEECTTTT----------CCHHHH-HHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC
T ss_pred CCeeecCCCCCceeeeeccccC----------CCHHHH-HHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCC
Confidence 888763 233556788874320 144444 455677899886322221 24679999753 6
Q ss_pred HHHHHHHHHHHHHHHH
Q 012124 447 LTTLQAAVERIKKGLL 462 (470)
Q Consensus 447 ~~~i~~~l~~l~~~l~ 462 (470)
++++++..+-|.++++
T Consensus 397 e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 397 EDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888877777664
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.62 E-value=7.7e-15 Score=144.89 Aligned_cols=342 Identities=11% Similarity=-0.031 Sum_probs=197.0
Q ss_pred cCCCeEEccCCCC--CCCC-hHHHHHHHHHHHHcC----CCCCCCCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChH
Q 012124 92 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREG----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 164 (470)
Q Consensus 92 ~~~~~i~l~~g~~--~~~~-~~~~~~a~~~~~~~~----~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~ 164 (470)
+|+.+|||..|.. .+.. ++.+.+++.+++... ...+ .......+.+.+++.+....+ ...+.++++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGs 127 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAP--KGMSQLITMACGS 127 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhc--cCcceeeeecchh
Confidence 6778899987643 2333 678888888765431 1111 122233566777777654333 2456899999999
Q ss_pred HHHHHHHHHhc----------------------------CCCCeEEEcCCCCCChHHHHHHc-CC-------------EE
Q 012124 165 QSILQAVLAVC----------------------------SPGDEVIIPAPFWVSYPEMARIA-DA-------------TP 202 (470)
Q Consensus 165 ~al~~~~~~l~----------------------------~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~ 202 (470)
+|.+.+++... .+...|+...-+|++........ |- ..
T Consensus 128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~ 207 (461)
T d1ohwa_ 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 207 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence 99999887642 22357888899999865443332 21 11
Q ss_pred EEecCcCCC-C---------CccCHHhHhhhc------cCCceEEEEcCCCCCcc-cCCCHHHHHHHHHHHHhCCCEEEE
Q 012124 203 VILPTRISE-N---------FLLDPKVLESKL------TEKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVL 265 (470)
Q Consensus 203 ~~v~~~~~~-~---------~~~d~~~l~~~l------~~~~~~i~l~~p~nPtG-~~~s~~~~~~l~~~~~~~~~~~iI 265 (470)
.+.+..... . ...+.+.+++.+ .+++.+|++...+...| ...+++.+++|.++|++| |+++|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~-gillI 286 (461)
T d1ohwa_ 208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFL 286 (461)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhh-Cccee
Confidence 111110000 0 001234455544 23566676655555555 567899999999999999 99999
Q ss_pred EeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 012124 266 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 345 (470)
Q Consensus 266 ~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~a~~~~ 345 (470)
.||++..+...|. ......+.-...-. +-+++|.++ .| +......+ ..........+++.+++...++.+.
T Consensus 287 ~DEV~tG~gRtG~-~~~~e~~gi~~~PD--iv~~gK~l~-~g----~~~~~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~ 357 (461)
T d1ohwa_ 287 VDEVQTGGGSTGK-FWAHEHWGLDDPAD--VMTFSKKMM-TG----GFFHKEEF-RPNAPYRIFNTWLGDPSKNLLLAEV 357 (461)
T ss_dssp EECTTTCSSTTSS-SSGGGGGCCSSCCS--EEEECGGGS-SE----EEEECGGG-SCSSTTSSCCSCSSCHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccCch--hhhhhhccc-cc----cccccccc-ccccccccccccccccccchhhccc
Confidence 9999998644332 11222111100112 336889986 43 33222211 1111223345677888888888887
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-eecCCCceEEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCC
Q 012124 346 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 424 (470)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 424 (470)
|+.-.. +..+++..+.-+..++.+.+...+.|.+ .-+ ...|+++-+++++.- ...++++.++++ |
T Consensus 358 l~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v-rG~Gl~~~ie~~~~~-----------~~~~i~~~~~~~-G 423 (461)
T d1ohwa_ 358 INIIKR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPDES-----------IRNKLISIARNK-G 423 (461)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSSHH-----------HHHHHHHHHHHT-T
T ss_pred chhhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEe-eeeeEEEEEEcCCHH-----------HHHHHHHHHHHC-C
Confidence 763110 1222222222222223333333333332 111 123555677887541 356788888776 9
Q ss_pred EEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 425 VALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 425 I~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
|.+.+.. ++.|||.... +++++++++++|++++++.
T Consensus 424 ll~~~~~----~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 424 VMLGGCG----DKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp EECEEET----TTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred eEEeeCC----CCEEEEeCCcCCCHHHHHHHHHHHHHHHhcC
Confidence 9987732 4678987654 9999999999999999763
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.53 E-value=9e-14 Score=133.29 Aligned_cols=327 Identities=10% Similarity=0.036 Sum_probs=191.2
Q ss_pred EEccCCCCCCCChHHHHHHHHHHHHcCCC------CCC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH-H
Q 012124 97 IRLAAGEPDFDTPVLIAEAGINAIREGFT------RYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI-L 168 (470)
Q Consensus 97 i~l~~g~~~~~~~~~~~~a~~~~~~~~~~------~y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al-~ 168 (470)
++|+.|- ...|+.+++++.+.+.+... ..+ -..-..++-+.+.+.+++.++.+ ++..|++++|++.+. .
T Consensus 5 ~~F~pGP--~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~e 81 (361)
T d2c0ra1 5 YNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFA 81 (361)
T ss_dssp EECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHH
T ss_pred cccCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHHH
Confidence 5665432 23489999999887543100 011 12234566677777787777853 344788877776554 5
Q ss_pred HHHHHhcCCCCeEEEcCCCCCC--hHHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCCH
Q 012124 169 QAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 246 (470)
Q Consensus 169 ~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s~ 246 (470)
.+...+..+|+.+++..-.... +..+.+..|..+..+..+..+ .++++.+++.+..... .. .+|.||...+
T Consensus 82 a~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~---v~~~tg~~~~- 154 (361)
T d2c0ra1 82 MIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQDNA-AY---LHLTSNETIE- 154 (361)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCCTTE-EE---EEEESEETTT-
T ss_pred HHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhcccCcc-eE---EEEeccccee-
Confidence 6666778889888766543322 335677899999888876443 3788888887765442 22 3567888888
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH-------
Q 012124 247 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF------- 319 (470)
Q Consensus 247 ~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~------- 319 (470)
.+++.++|+++ |+++++|.+.+. +..+..+..+ .+.+.|.+|.++.+|.-..++. ...+
T Consensus 155 --~~~i~~~~~~~-~al~~vDavss~----g~~~id~~~~------di~~~s~~k~~~~~~~~~~~~~-~~~~~~~~~~~ 220 (361)
T d2c0ra1 155 --GAQFKAFPDTG-SVPLIGDMSSDI----LSRPFDLNQF------GLVYAGAQKNLGPSGVTVVIVR-EDLVAESPKHL 220 (361)
T ss_dssp --TEECSSCCCCT-TSCEEEECTTTT----TSSCCCGGGC------SEEEEETTTTTCCSSCEEEEEE-GGGSSSCCTTS
T ss_pred --cceEEEeeccC-CceEEEEeeccc----cccccccccc------eeEEEecccccccccCcEEEEE-hHHhhhCcccc
Confidence 56778899999 999999999875 2222333332 2556778999986664333332 2211
Q ss_pred -----HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCC-eecC---CCceEE
Q 012124 320 -----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KMSE---PQGAFY 390 (470)
Q Consensus 320 -----~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~-~~~~---~~~g~~ 390 (470)
............ .+++....++........ ..........+.+.++..+.......... .... ..+...
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~ 298 (361)
T d2c0ra1 221 PTMLRYDTYVKNNSLYN-TPPSFGIYMVNEVLKWIE-ERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMN 298 (361)
T ss_dssp CGGGCHHHHHHTTTCSS-CCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSE
T ss_pred ccccccccccccccccc-cccceeeehhhhHHHhhh-hccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceE
Confidence 111122122111 222222222222211100 02223334444444555555554443222 2111 122334
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
+.+.+|+.. +..++.+.|. +.||.+..|. +.-+.||+|+.. +.|+++++++.|+++.++
T Consensus 299 ~~~~~~~~~-----------~~~~~~~~L~-~~GI~~~~G~--~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 299 ITFRLASEE-----------LEKEFVKASE-QEGFVGLKGH--RSVGGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp EEEECSCHH-----------HHHHHHHHHH-HTTEESCBCC--TTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCcc-----------cHHHHHHHHH-HCCCEEecCC--CcCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 566777653 5677887765 5599998884 333469999987 899999999999987764
|
| >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional repressor TraR, N-terminal domain species: Streptomyces sp. [TaxId: 1931]
Probab=99.49 E-value=7e-16 Score=117.71 Aligned_cols=55 Identities=7% Similarity=-0.004 Sum_probs=52.2
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||++|+|||+| ||++|+++|+|++++| +||||+..
T Consensus 19 ~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V~~~ 76 (100)
T d1v4ra1 19 RTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA-LGTVVEKN 76 (100)
T ss_dssp HHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT-TEEESCSC
T ss_pred HHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecC-CEEEECCC
Confidence 4679999999999999999999999999999 9999999999999999 99999753
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2e-16 Score=113.16 Aligned_cols=55 Identities=13% Similarity=-0.116 Sum_probs=51.9
Q ss_pred ccccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 8 STSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 8 ~~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
....|.+|.++||+||||.|+||+.|+|||+| ||++|+++|||++++| +||||+.
T Consensus 12 i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V~~ 69 (74)
T d1hw1a1 12 IIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHG-KPTKVNN 69 (74)
T ss_dssp HHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-EEEEECC
T ss_pred HHHHHHcCCCCCcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEeC-ceEEECC
Confidence 34679999999999999999999999999999 9999999999999999 9999963
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=99.47 E-value=4.6e-16 Score=113.21 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=52.2
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCcccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQVD 64 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~~ 64 (470)
...|.+|.++||++|||.|+||+.|+|||+| ||++|+++|+|++++| +||||...
T Consensus 8 ~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V~~~ 65 (78)
T d3bwga1 8 ETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG-SGIFVRKH 65 (78)
T ss_dssp HHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECCC
T ss_pred HHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC-cEEEEccC
Confidence 4679999999999999999999999999999 9999999999999999 99999754
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=5.1e-13 Score=127.57 Aligned_cols=331 Identities=10% Similarity=0.013 Sum_probs=187.9
Q ss_pred eEEccCCCCCCCChHHHHHHHHHHHHcCC-CC-----CC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHHH
Q 012124 96 VIRLAAGEPDFDTPVLIAEAGINAIREGF-TR-----YT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 168 (470)
Q Consensus 96 ~i~l~~g~~~~~~~~~~~~a~~~~~~~~~-~~-----y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al~ 168 (470)
+++|+.|-. ..|+.+++++.+.+.+.. .+ .+ -.....++-+.+.+.+++.++.+ +++.|++++|++++..
T Consensus 2 ~~nF~pGP~--~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~-~~~~v~~~~gs~t~~~ 78 (360)
T d1bjna_ 2 IFNFSSGPA--MLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP-SNYKVLFCHGGGRGQF 78 (360)
T ss_dssp CEECCSSSC--CCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHH
T ss_pred eEEeCCCCc--CCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCchHHHH
Confidence 466654322 348999999998764310 00 01 11223455556666666666742 3447888888877766
Q ss_pred HHHH-HhcCCCCeEEEcCCCCCCh--HHHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCCC
Q 012124 169 QAVL-AVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 245 (470)
Q Consensus 169 ~~~~-~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~s 245 (470)
.+.. .+..+++.+++....+... ....+..|...+.+....+. ..+.+.+++.+..++++++++..+|-||...+
T Consensus 79 ~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~ 156 (360)
T d1bjna_ 79 AAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQLSDNAAYMHYCPNETIDGIA 156 (360)
T ss_dssp HHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCCCSSCSCEEECSEETTTTEE
T ss_pred hhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--CcchhhhhhhhccCCceeEEEecccccccCcc
Confidence 5554 4566778888776555443 23455566666666654333 35677777777888888888778888888776
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHH------
Q 012124 246 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF------ 319 (470)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~------ 319 (470)
.. .+. ++.+ ++.++.|.+.+... ...... +-.+++.|.+|.++.|+ ..++++.....
T Consensus 157 ~~---~i~--~~~~-~~~v~vDa~~~~~~----~~vd~~------~~dv~~~ss~k~~~~~~-~~~~~~~~~~~~~~~~~ 219 (360)
T d1bjna_ 157 ID---ETP--DFGA-DVVVAADFSSTILS----RPIDVS------RYGVIYAGAQKNIGPAG-LTIVIVREDLLGKANIA 219 (360)
T ss_dssp CC---CCC--CCCT-TCCEEEECTTTTTS----SCCCGG------GCSEEEEETTTTTSSTT-CEEEEEEGGGCSCCCTT
T ss_pred cc---cee--cccc-cceeeeeeeccccc----eeeeec------cceeEEEEcccccccCC-CceeEeeehhhhhcccc
Confidence 33 332 4556 88899998776421 112222 33477888899997454 34444433221
Q ss_pred ------HHHHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeecCC---CceEE
Q 012124 320 ------VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFY 390 (470)
Q Consensus 320 ------~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~---~~g~~ 390 (470)
............ .++......+......-. .........++.++...++.+.+....+..+... .+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v 297 (360)
T d1bjna_ 220 CPSILDYSILNDNGSMFN-TPPTFAWYLSGLVFKWLK-ANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMN 297 (360)
T ss_dssp SCGGGCHHHHHHTTTCSS-CCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSE
T ss_pred CCcchhhHHHHhhhhhcc-ccccchHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceE
Confidence 111111111112 222222222221111100 1233445555555555555555554422222211 12233
Q ss_pred EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 391 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
+.+.+|+.. +...+.+.|.+ .||.+..|.. .-+.||+|+.. ++|+++++++.|+++.++.
T Consensus 298 ~~f~~~~~~-----------~~~~~~~~l~~-~Gi~~~~G~~--~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 298 VPFQLADSA-----------LDKLFLEESFA-AGLHALKGHR--VVGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp EEEEESSGG-----------GHHHHHHHHHH-TTEECCBCCT--TTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcc-----------cHHHHHHHHHH-CCCEeecCCC--ccCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 556777653 66778877654 5999988742 22469999976 8999999999999987654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.34 E-value=8.3e-12 Score=119.15 Aligned_cols=329 Identities=10% Similarity=0.005 Sum_probs=175.5
Q ss_pred CeEEccCCCCCCCChHHHHHHHHHHHHcCC--CC----CC-CCcCcHHHHHHHHHHHHHHcCCCCCCCcEEEecChHHHH
Q 012124 95 SVIRLAAGEPDFDTPVLIAEAGINAIREGF--TR----YT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 167 (470)
Q Consensus 95 ~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~--~~----y~-~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~it~g~~~al 167 (470)
.+++|+.|-. ..|+++++++.+.+.+-. .. .+ -+.-..++-+.+.+.+++.++.+ ++..|++++|++++.
T Consensus 3 ~~~nF~pGP~--~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~-~~~~i~~~~gt~~~~ 79 (360)
T d1w23a_ 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceeEeCCCCc--CCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHH
Confidence 3456666533 347999999988653210 00 00 01112334444555555556642 334688889988877
Q ss_pred HHHHHH-hcCCCCeEEEcCCCCCChH--HHHHHcCCEEEEecCcCCCCCccCHHhHhhhccCCceEEEEcCCCCCcccCC
Q 012124 168 LQAVLA-VCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 244 (470)
Q Consensus 168 ~~~~~~-l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~i~l~~p~nPtG~~~ 244 (470)
..+... +..+++.|++....+.+.. ..++..+...+........ ..+++.+++...... .. ...|-||...
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~---~~~~~tg~~~ 153 (360)
T d1w23a_ 80 FTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANS--YQSIPDFSEFQLNEN-DA---YLHITSNNTI 153 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGT--SCSCCCGGGCCCCTT-EE---EEEEESEETT
T ss_pred HHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccc--ccchhhhhhcccccc-cc---eeEecCCccc
Confidence 755554 4567788877665444332 3455566666555543222 234455555443322 22 2345678888
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccccccceeeEEEcCHHHHH---
Q 012124 245 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--- 321 (470)
Q Consensus 245 s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r~G~~~~~~~~~~--- 321 (470)
+ .++|.++|+++ |+++|+|.+.+.. .....+..++ +.+.+++|.++++| ..|+++..+...+
T Consensus 154 ~---~~~i~~~~~~~-g~l~ivDavqs~g----~~~id~~~~~------vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~ 218 (360)
T d1w23a_ 154 Y---GTQYQNFPEIN-HAPLIADMSSDIL----SRPLKVNQFG------MIYAGAQKNLGPSG-VTVVIVKKDLLNTKVE 218 (360)
T ss_dssp T---TEECSSCCCCC-SSCEEEECTTTTT----SSCCCGGGCS------EEEEETTTTTSCTT-CEEEEEEHHHHCSCCT
T ss_pred c---ceeeeeccccc-eeeEEeecccccc----cccccccccc------ceEEeeccccccCC-cceeeEechhhhcccc
Confidence 8 67788999999 9999999998752 2233333332 55667777776444 3455544332211
Q ss_pred ---------HHHHHhhhccCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCeec----CCCce
Q 012124 322 ---------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS----EPQGA 388 (470)
Q Consensus 322 ---------~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~----~~~~g 388 (470)
.... .......++.....+....+.... .........+..+................... ...+.
T Consensus 219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~ 296 (360)
T d1w23a_ 219 QVPTMLQYATHIK-SDSLYNTPPTFSIYMLRNVLDWIK-DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSL 296 (360)
T ss_dssp TCCGGGCHHHHHH-TTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCS
T ss_pred cCCcchhhhhhhh-hhhhcccccceeeechhHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcce
Confidence 1111 111222233332222222221100 01112222333333333333333332122111 11122
Q ss_pred EEEeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCCCCCCCcEEEEeec--CHHHHHHHHHHHHHHHHh
Q 012124 389 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDAFGDDTCIRISYAA--SLTTLQAAVERIKKGLLT 463 (470)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l~~ 463 (470)
..+.+.+++.. +..++...|.+ +||.+..|... -+.+|+|+.. +.|+++++++.|+++.+.
T Consensus 297 ~vvsf~i~~~~-----------~~~~~~~~l~~-~GI~~~~G~~~--~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 297 MNVTFNLRNEE-----------LNQQFLAKAKE-QGFVGLNGHRS--VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp SEEEEECSSHH-----------HHHHHHHHHHH-TTEESCBCCTT--TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCc-----------cHHHHHHHHHH-CCCeeeeCCCc--cCcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 23566777643 56678776654 59998887532 2469999866 899999999999988764
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=99.30 E-value=1.2e-14 Score=102.57 Aligned_cols=53 Identities=9% Similarity=-0.033 Sum_probs=49.9
Q ss_pred cccccCcccCCCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccccc
Q 012124 9 TSFISNPVNFGHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEVQV 63 (470)
Q Consensus 9 ~~~i~~~~~~~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V~~ 63 (470)
...|.+|.++||++|| .|+||+.|||||+| ||.+|+++|+|+++++ +|+||+.
T Consensus 12 ~~~I~~g~~~~G~~l~-~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~-~G~~V~~ 67 (69)
T d2hs5a1 12 RDAIIDGTFRPGARLS-EPDICAALDVSRNTVREAFQILIEDRLVAHELN-RGVFVRV 67 (69)
T ss_dssp HHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEECC
T ss_pred HHHHHcCCCCCcCccC-HHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC-CEEEecC
Confidence 3578999999999997 89999999999999 9999999999999999 9999964
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=5e-10 Score=107.60 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=214.7
Q ss_pred hHHHHHHHHHHHHhcCCC--eEEccCCCCCCCChHHHHHHHHH-HHHcCCCCCCC--CcCcHHHHHHHHHHHHHHcCCCC
Q 012124 78 KTVAITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGIN-AIREGFTRYTP--NAGTLELRSAICHKLKEENGLSY 152 (470)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~--~i~l~~g~~~~~~~~~~~~a~~~-~~~~~~~~y~~--~~g~~~lr~~ia~~l~~~~g~~~ 152 (470)
.-.++.+....+.+.+.. .-.+..|..+.-.|+.+.+.+.+ .+-...+-|.| .+|..++.-.+..++.+..|.++
T Consensus 46 sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~ 125 (437)
T d1wyua1 46 PEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEI 125 (437)
T ss_dssp CHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSE
T ss_pred CHHHHHHHHHHHHhCCCCcCccccCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 344566666666665532 12344455555556665433221 11122334443 57888888889999998888643
Q ss_pred CCCcEEEecChHHHHHHHHHHhc-CCCCeEEEcCCCCCChHHH----HHHcCCEEEEecCcCCCCCccCHHhHhhhccCC
Q 012124 153 TPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEK 227 (470)
Q Consensus 153 ~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 227 (470)
-+.-.-.|++.....++.+.. ...+++++..-.++.+... ++..|.+++.++.+..+ .+.++ +.++
T Consensus 126 --~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~---~~~~~----~~~~ 196 (437)
T d1wyua1 126 --ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR---TPLPE----VGEE 196 (437)
T ss_dssp --ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB---CCCCC----CCTT
T ss_pred --cccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccccc---chhhh----hccc
Confidence 244455688777776665542 3457899999888877654 45689999999986332 23332 5668
Q ss_pred ceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEeccCcccc---
Q 012124 228 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA--- 304 (470)
Q Consensus 228 ~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S~sK~~~--- 304 (470)
+.++++.+|+. .|..-+ ++++++++++. |.+++.| +.- +.... ..+... .+-.|++++ +|.||
T Consensus 197 ~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~-G~l~~~~-ad~-~al~~--l~~Pg~----~GaDi~~g~-~q~fg~p~ 262 (437)
T d1wyua1 197 VGAVVVQNPNF-LGALED---LGPFAEAAHGA-GALFVAV-ADP-LSLGV--LKPPGA----YGADIAVGD-GQSLGLPM 262 (437)
T ss_dssp EEEEEEESSCT-TSBCCC---HHHHHHHHHHT-TCEEEEE-CCT-TGGGT--BCCHHH----HTCSEEEEE-CTTTTCCC
T ss_pred eeEEEEccccc-cccccc---hHHHHHHhhhc-cceEEee-ech-hhhhc--cccccc----cccceEeec-cceecccc
Confidence 99999999965 677744 88999999999 8887755 332 11111 111111 233466666 55543
Q ss_pred -cccceeeEEEcCHHHHHHH----------------------------HHHhhhccCCCChHHHH-HHHHHH-hcCCCCh
Q 012124 305 -MTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQK-AGVAAL-GLGYAGG 353 (470)
Q Consensus 305 -~~G~r~G~~~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q~-a~~~~l-~~~~~~~ 353 (470)
..|--.|++.+.+++.+.+ ++-+...+.|.+..... .+..++ .. +.
T Consensus 263 g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~l---G~ 339 (437)
T d1wyua1 263 GFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL---GP 339 (437)
T ss_dssp GGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH---HH
T ss_pred CCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhc---Cc
Confidence 3444468888877665433 23333444555544332 222233 33 36
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE-EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEE-CCC
Q 012124 354 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALV-PGD 431 (470)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~-pg~ 431 (470)
+.++++.+....+.+++.+.|.+++|+....+..-|. +.++++. +..++.++|+++ |+... +-.
T Consensus 340 ~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~-------------~~~~i~k~L~d~-G~~~~~~~~ 405 (437)
T d1wyua1 340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK-------------DPEAVRRALAER-GFHGATPVP 405 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS-------------CHHHHHHHHHHT-TCCCCEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC-------------CHHHHHHHHHhC-CCCCCcccc
Confidence 7789999999999999999999988887654432221 2344443 678899998866 77321 111
Q ss_pred CCCCCCcEEEEeec--CHHHHHHHHHHHHHHH
Q 012124 432 AFGDDTCIRISYAA--SLTTLQAAVERIKKGL 461 (470)
Q Consensus 432 ~f~~~~~iRls~~~--~~~~i~~~l~~l~~~l 461 (470)
.+..++.+.++++- +.++|+.+++.|++++
T Consensus 406 ~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 406 REYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp TTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 22346789999985 8899999999998764
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=2.6e-09 Score=103.91 Aligned_cols=355 Identities=16% Similarity=0.118 Sum_probs=212.6
Q ss_pred cCCchHHHHHHHHHHHHhcCC----CeEEccCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CcCcHHHHHHHHHHHHH
Q 012124 74 VKPSKTVAITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKE 146 (470)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~----~~i~l~~g~~~~~~~~~~~~a~~~~~~~~~~~y~~---~~g~~~lr~~ia~~l~~ 146 (470)
+++-.-.++.+....+..++. ..+-++.+..- .+|.+.+.+.+. -...+-|.| ++|..+..-..+..+.+
T Consensus 41 LP~~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~h--y~P~v~~~~~~~-~TaYTPYQPaEiSQG~LQalfEfQtmi~e 117 (471)
T d1wyub1 41 LPEVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMK--YNPKLHEEAARL-FADLHPYQDPRTAQGALRLMWELGEYLKA 117 (471)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCC--CCCHHHHHHHHT-TSSCCTTSCGGGCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCccccccCCccccCc--cCcchhhhHHHH-HhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333344456666666666554 23333333222 234555555432 223455655 56777777777777777
Q ss_pred HcCCCCCCCcEEEecChHHHHHHHHHHh---cCCC----CeEEEcCCCCCC-hHHHHHHcCCEEEEecCcCCCCCccCHH
Q 012124 147 ENGLSYTPDQILVSNGAKQSILQAVLAV---CSPG----DEVIIPAPFWVS-YPEMARIADATPVILPTRISENFLLDPK 218 (470)
Q Consensus 147 ~~g~~~~~~~i~it~g~~~al~~~~~~l---~~~g----d~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~~ 218 (470)
..|.++ -|.-+-.|++.....++.+. .+.+ ..+.+..+.+.. ........+..++.++.+. ....|.+
T Consensus 118 LTGMdv--aNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 193 (471)
T d1wyub1 118 LTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLE 193 (471)
T ss_dssp HHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHH
T ss_pred HhCCCc--cccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc--cccccch
Confidence 778653 24445567776655554443 1222 234445555544 4455667888888888754 3457999
Q ss_pred hHhhhccCCceEEEEcCCCCCcccCCCHHHHHHHHHHHHhCCCEEEEEeccccccccCCCCcccccccCCCCCceEEEec
Q 012124 219 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 298 (470)
Q Consensus 219 ~l~~~l~~~~~~i~l~~p~nPtG~~~s~~~~~~l~~~~~~~~~~~iI~Dd~~~~~~~~~~~~~~~~~~~~~~~~~i~i~S 298 (470)
.+.....+++.++++.+|++..+..-. .++++++++++ +..++.|-+.-.....-.. + .. ....+++..
T Consensus 194 ~~~~~~~~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~-g~~~~~~~~~~~~~~~l~~-p-----~~-~g~div~vg 262 (471)
T d1wyub1 194 ALKRELGPHVAALMLTNPNTLGLFERR---ILEISRLCKEA-GVQLYYDGANLNAIMGWAR-P-----GD-MGFDVVHLN 262 (471)
T ss_dssp HHHHHCSTTEEEEEECSSCTTSCCCTT---HHHHHHHHHHH-TCEEEEEGGGGGGTTTTCC-H-----HH-HTCSEEECC
T ss_pred hhhhhhhccccceeeccCCCcccccch---hhhhHHHHHhc-cccccccccchhhhhhccc-c-----Cc-ccccccccc
Confidence 999998888999999999887655444 66788888888 7766666544322211100 1 11 112233333
Q ss_pred cCccc----ccccceeeEEEcCHHHHHHHH-------------------HHhhhccCCCC-hHHHHHHHHHHhcCCCChH
Q 012124 299 FSKAF----AMTGWRLGYIAGPKHFVAACN-------------------KIQSQFTSGAS-SISQKAGVAALGLGYAGGE 354 (470)
Q Consensus 299 ~sK~~----~~~G~r~G~~~~~~~~~~~l~-------------------~~~~~~~~~~~-~~~q~a~~~~l~~~~~~~~ 354 (470)
..+.+ +..|--+|++.+.+++++.+- .+++. ..|++ .+...++..++.. .+.+
T Consensus 263 ~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe-~actnqaL~al~A~vYlsl--lG~~ 339 (471)
T d1wyub1 263 LHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRV-RSFYGNFLALVRAWAYIRT--LGLE 339 (471)
T ss_dssp TTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCS-SSTTSCHHHHHHHHHHHHH--HHHH
T ss_pred cccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccch-hhhhhhHHHHHHHHHHHHH--hCch
Confidence 34444 445556889998888776541 11111 12344 3333333333332 1478
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeecCCCceEE--EeeeccCccCCcccCCCCCCCHHHHHHHHHHcCCEEEECCCC
Q 012124 355 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVALVPGDA 432 (470)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~v~pg~~ 432 (470)
.++++.+....+..++.+.|+. +|+++.. .+.+| +.++++..+ +..++.++|+++ |+.- +...
T Consensus 340 GL~elA~~~~~~A~Yla~~L~~-~G~~~~~-~~~ff~EFvv~~~~~~-----------~~~~i~k~L~~~-G~~~-~~~~ 404 (471)
T d1wyub1 340 GLKKAAALAVLNARYLKELLKE-KGYRVPY-DGPSMHEFVAQPPEGF-----------RALDLAKGLLEL-GFHP-PTVY 404 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTCBCSS-CSSCCSCEEEBCSTTC-----------CHHHHHHHHHHT-TCCC-CEES
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-cCceecc-CcceeeEEeecCCCCC-----------CHHHHHHHHHHc-CCCC-Cccc
Confidence 8999999999999999999976 5887643 23232 234555442 677899999876 7632 2223
Q ss_pred CC--CCCcEEEEeec--CHHHHHHHHHHHHHHHHhh
Q 012124 433 FG--DDTCIRISYAA--SLTTLQAAVERIKKGLLTL 464 (470)
Q Consensus 433 f~--~~~~iRls~~~--~~~~i~~~l~~l~~~l~~~ 464 (470)
|. .++.+-++++- +.++|+.+++.|++++++.
T Consensus 405 ~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 405 FPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp CSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred CcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 32 25688888875 8999999999999998864
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=4.7e-05 Score=51.14 Aligned_cols=38 Identities=5% Similarity=-0.135 Sum_probs=33.0
Q ss_pred CCCCCCccccCCcccc---ccccccccch-hhhhhcCCCcccc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEVQ 62 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V~ 62 (470)
-|..+||+.||||+.| -.+.|+++|+ |++..| .||.+.
T Consensus 20 ~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~g-~GY~L~ 61 (63)
T d1biaa1 20 HSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPG-KGYSLP 61 (63)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETT-TEEECS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCcEEEeCC-CeEEeC
Confidence 3578999999999999 8889999998 788888 898653
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.0013 Score=45.03 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=29.5
Q ss_pred CCCCCCCccccCC-cccc---ccccccccchhhhhhc
Q 012124 23 IPAQIPGSVSFPS-RYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 23 lPs~R~La~~l~v-s~~T---Ay~~L~~~G~i~s~~g 55 (470)
=||.|++|+.+|+ |.+| -.+.|+++|||+..++
T Consensus 24 ~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~~ 60 (71)
T d1jhfa1 24 PPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSG 60 (71)
T ss_dssp CCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecCCC
Confidence 4999999999999 7888 7789999999998765
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.28 E-value=0.0042 Score=41.49 Aligned_cols=35 Identities=0% Similarity=-0.189 Sum_probs=28.2
Q ss_pred CCCCCccccCCcccc---ccccccccch-hhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRV-LRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~-i~s~~g~sG~~V 61 (470)
|..+||+.|+||+.| =.+.|+++|+ |++.. .||..
T Consensus 24 s~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~--gGY~L 62 (65)
T d1j5ya1 24 SGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATP--RGYVL 62 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEET--TEEEC
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEEeC--CCEEe
Confidence 678999999999999 6668999998 77753 37643
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.30 E-value=0.0076 Score=39.73 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=28.7
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhhhc
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMAC 55 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g 55 (470)
+...++|+.||||++| +..+|.++|||...+.
T Consensus 24 v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~y 58 (63)
T d2isya1 24 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 58 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcCC
Confidence 5677899999999999 9999999999987754
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=88.60 E-value=0.011 Score=38.72 Aligned_cols=33 Identities=3% Similarity=-0.237 Sum_probs=26.3
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCC
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGV 58 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG 58 (470)
+.-+||+.||||+.| +.++|.++|||.-.+- .|
T Consensus 23 ~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~Y-~~ 58 (61)
T d2ev0a1 23 RVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY-RG 58 (61)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----C
T ss_pred cHHHHHHHhCCCchhHHHHHHHHHHCCCEEEccC-CC
Confidence 456899999999999 9999999999988764 44
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=87.34 E-value=0.011 Score=40.35 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| +..+|+++|+|+..
T Consensus 29 t~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~ 60 (73)
T d1zyba1 29 KMDDLARCLDDTRLNISKTLNELQDNGLIELH 60 (73)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 678999999999999 99999999999854
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.43 E-value=0.016 Score=40.29 Aligned_cols=35 Identities=6% Similarity=-0.251 Sum_probs=29.9
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|+.+||..+|+||.| ++.+|+++|+|+-. + +|.++
T Consensus 32 t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~-~-~~~i~ 69 (80)
T d1ft9a1 32 TVEEIANLIGSSRQTTSTALNSLIKEGYISRQ-G-RGHYT 69 (80)
T ss_dssp CHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC-S-TTCEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEC-C-CCeEE
Confidence 677999999999999 99999999999866 3 45444
|
| >d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CodY HTH domain domain: GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.06 E-value=0.019 Score=38.56 Aligned_cols=35 Identities=3% Similarity=-0.195 Sum_probs=31.2
Q ss_pred CCccccCCcccc---ccccccccchhhhhh-cCCCcccc
Q 012124 28 PGSVSFPSRYLH---NFNLNNDRRVLRVMA-CSGVEEVQ 62 (470)
Q Consensus 28 ~La~~l~vs~~T---Ay~~L~~~G~i~s~~-g~sG~~V~ 62 (470)
.+|++.|+.|+. |...|+.-|.|+||- |-+|||+.
T Consensus 39 kiADrvgiTRSVIVNALRK~ESAGvIEsrSlGMKGTyik 77 (91)
T d2b0la1 39 KIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 77 (91)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred hhhhhhCchHHHHHHHHHHhhhcceeeeccCCCCeeeee
Confidence 578999999999 999999999999987 55899974
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=84.33 E-value=0.015 Score=40.95 Aligned_cols=37 Identities=0% Similarity=-0.268 Sum_probs=30.6
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|+++||+.++++++| ..++|+++|||+...-.+++++
T Consensus 23 t~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i 62 (85)
T d3ctaa1 23 TSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQIL 62 (85)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeecccccccc
Confidence 578999999999999 9999999999987552155554
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=0.021 Score=38.40 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=26.7
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
++.+||..+|+||.| ...+|+++|+|+..
T Consensus 31 t~~~lA~~~G~sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 31 TRQEIGQIVGCSRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEc
Confidence 567999999999999 99999999999765
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=82.13 E-value=0.032 Score=43.36 Aligned_cols=41 Identities=7% Similarity=-0.215 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 19 GHSKIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 19 ~g~~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
+|.++ |+++||+.+++|+.. ....|.+.|+|.|..| .|-|.
T Consensus 20 ~~~~v-ss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG-~GG~~ 63 (138)
T d1ylfa1 20 PSSLC-TSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAG 63 (138)
T ss_dssp CGGGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred CCCcC-cHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecC-CCCce
Confidence 56554 569999999999999 9999999999999999 46554
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=81.13 E-value=0.038 Score=38.35 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=27.2
Q ss_pred CCCCCCccccCCcccc---ccccccccchhhhh
Q 012124 24 PAQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 24 Ps~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
.|+.+||..+|+||.| +..+|+++|+|+-.
T Consensus 30 lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~ 62 (81)
T d2gaua1 30 LSREELATLSNMTVSNAIRTLSTFVSERMLALD 62 (81)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3677999999999999 99999999999854
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=80.98 E-value=0.043 Score=41.86 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=34.0
Q ss_pred CCCCCCCCccccCCcccc---ccccccccchhhhhhcCCCccc
Q 012124 22 KIPAQIPGSVSFPSRYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 22 ~lPs~R~La~~l~vs~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
++ |+++||+.+++|.+. ....|.+.|+|+|..|..|.|-
T Consensus 18 ~~-ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~rG~~GGyL 59 (127)
T d1xd7a_ 18 KT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASL 59 (127)
T ss_dssp CC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEE
T ss_pred CC-CHHHHHHHhCcCHHHHHHHHHHHHHhCcccccCCCCCccc
Confidence 45 578999999999888 9999999999999998667664
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.79 E-value=0.046 Score=38.38 Aligned_cols=37 Identities=0% Similarity=-0.252 Sum_probs=28.8
Q ss_pred CCCCCCccccCC--cccc---ccccccccchhhhhhcCCCccc
Q 012124 24 PAQIPGSVSFPS--RYLH---NFNLNNDRRVLRVMACSGVEEV 61 (470)
Q Consensus 24 Ps~R~La~~l~v--s~~T---Ay~~L~~~G~i~s~~g~sG~~V 61 (470)
|++|+|++.+++ |..| -...|+++|||+.-.- |+-.|
T Consensus 24 v~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~-s~Gri 65 (87)
T d1stza1 24 VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT-SAGRI 65 (87)
T ss_dssp BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS-CSCBE
T ss_pred cCHHHHHHHhCCCCCHHHHHHHHHHHHHCCcccCCCC-CCCCc
Confidence 789999999665 6667 7899999999988655 44444
|
| >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Chlorophenol reduction protein CprK species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=80.54 E-value=0.035 Score=38.50 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=26.1
Q ss_pred CCCCCccccCCcccc---ccccccccchhhhh
Q 012124 25 AQIPGSVSFPSRYLH---NFNLNNDRRVLRVM 53 (470)
Q Consensus 25 s~R~La~~l~vs~~T---Ay~~L~~~G~i~s~ 53 (470)
|+.+||..+|+||.| ++.+|.++|+|+..
T Consensus 32 t~~elA~~~g~sretvsr~l~~l~~~glI~~~ 63 (80)
T d3e5ua1 32 SQKSIGEITGVHHVTVSRVLASLKRENILDKK 63 (80)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 567899999999999 99999999999764
|