Citrus Sinensis ID: 012130
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9P4 | 541 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.859 | 0.746 | 0.693 | 1e-172 | |
| P52410 | 473 | 3-oxoacyl-[acyl-carrier-p | no | no | 0.610 | 0.606 | 0.569 | 3e-96 | |
| P23902 | 462 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.604 | 0.614 | 0.561 | 8e-93 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.587 | 0.666 | 0.467 | 3e-67 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.587 | 0.665 | 0.471 | 3e-66 | |
| Q83E37 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.589 | 0.669 | 0.455 | 1e-65 | |
| P73283 | 416 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.595 | 0.673 | 0.436 | 1e-63 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.587 | 0.668 | 0.441 | 1e-60 | |
| P0AAI8 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.580 | 0.661 | 0.432 | 1e-57 | |
| P0AAI5 | 413 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.580 | 0.661 | 0.432 | 1e-57 |
| >sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 603 bits (1556), Expect = e-172, Method: Compositional matrix adjust.
Identities = 305/440 (69%), Positives = 343/440 (77%), Gaps = 36/440 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +R LS KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDSRQAVALQSGGRSRRRRQLS---------KCS 52
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
V SGS+ SIQ+L+ SCL F PC Y + +N SS FGSN
Sbjct: 53 VA------------SGSA-SIQALVTSCLDFGPCTHYNN---------NNALSSLFGSN- 89
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 90 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGH 145
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 146 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 205
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T++VM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 206 TAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 265
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 266 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 325
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 326 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 385
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEPHPDG
Sbjct: 386 FLGGSFTCDAYHMTEPHPDG 405
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Essential protein that catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-16 and C-16 to unsaturated C-18 fatty acids. Confers resistance to low temperatures by maintaining chloroplast membranes integrity. Involved in the regulation of fatty acids ratios during seed metabolism. Required for embryo development, especially at the transition from the globular to the heart stage. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2 | Back alignment and function description |
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Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 164/288 (56%), Positives = 217/288 (75%), Gaps = 1/288 (0%)
Query: 154 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAA 213
V+ K+ +KRVV+TGMGLVS G++ D +Y LL G SGIS I+ FD + FPT+
Sbjct: 50 VSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109
Query: 214 EIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
+I+ FS++G++ K +R+D + Y + AGKKAL + D +N +DK K GVL+G+G+
Sbjct: 110 QIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGM 169
Query: 274 GGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG+ VF + ++ L +++++PF +P+A TNMGSA+LA+DLG MGPNYSISTACATSN+
Sbjct: 170 GGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNY 229
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392
C AANHI RGEA++M+ GG++AA+IPIGLGGFVACRALSQRN+DP ASRPWD RDG
Sbjct: 230 CFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDG 289
Query: 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
FVMGEGAGVL++E LEHA KRGA I AE+ GG+ DA+HMT+P DG
Sbjct: 290 FVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADG 337
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|P23902|KASC1_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1 | Back alignment and function description |
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Score = 341 bits (874), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 164/292 (56%), Positives = 215/292 (73%), Gaps = 8/292 (2%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
+KRVV+TGMGL S G + D FY+ LL G SG+ I+ FD +SFPT+ A +I+ FS++G+
Sbjct: 47 RKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAGQIRGFSSEGY 106
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K +R+D + Y + +GKKAL G+ D +LD + GVL+G+G+GG+ VF D
Sbjct: 107 IDGKNDRRLDDCIRYCILSGKKALESAGLGAGSDAHVKLDVGRAGVLVGTGMGGLSVFSD 166
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
++ L Y+K++PF +P+A TNMGSA+LA+D+G+MGPNYSISTACATSN+C AANH
Sbjct: 167 GVQNLIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYCFYAAANH 226
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RGEA++++ GG++AA+IPIGLGGFVACRALSQRN+DP A RPWD RDGFVMGEGAG
Sbjct: 227 IRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGFVMGEGAG 286
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA-----MSLR 447
VL++E LEHA KR A I AE+ GG+ DAYHMT+P DG MSLR
Sbjct: 287 VLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCITMSLR 338
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/280 (46%), Positives = 187/280 (66%), Gaps = 4/280 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+G+GAG
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+++LEE EHAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDG 277
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
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Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 132/280 (47%), Positives = 182/280 (65%), Gaps = 4/280 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LLEG SGI IE FD T+F T+ A +K F
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNIEHFDATNFSTRFAGLVKDFDCT 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ + E + ++ GV IGSG+GG+ +
Sbjct: 61 EYMSKKDARKMDLFIQYGIAAGIQALDDSGLE---ITEENAARVGVAIGSGIGGLDLIEA 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD RDGFV+G+GAG
Sbjct: 178 IAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
V++LEE EHAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 VMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDG 277
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/281 (45%), Positives = 181/281 (64%), Gaps = 4/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M+++RVV+TG+G+VSPLG++ + LL G SG+ I FD +SFPT+IAAE++ F
Sbjct: 1 MEKRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPA 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++ D F+ + + + ++A D G+ +NE + + GV IGSG+GGM
Sbjct: 61 LVLDLKSIRKTDVFVQFAMESARQAWEDSGLE---INETNAPRVGVAIGSGIGGMPWIEK 117
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL S +K++PF +P A NM S M+++ GPN SI TAC T I +AA
Sbjct: 118 NYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I +A+ M+ GG++ A P+G+GGF A RALS RN++P KASRPWD RDGFV+GEGA
Sbjct: 178 IAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAA 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGK 441
+++EELEHAKKR A IYAE G + DAYHMT P P+ +
Sbjct: 238 CVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAE 278
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P73283|FABF_SYNY3 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/284 (43%), Positives = 180/284 (63%), Gaps = 4/284 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 239
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
G+L+LEELE A RGAKIY E G + T DAYH+T P PDG+ A
Sbjct: 240 GILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGA 283
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/281 (44%), Positives = 178/281 (63%), Gaps = 5/281 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M +KRVVVTG+G +SPLG++ D +NN + GVSGI I D +P K+AAE+K F+ +
Sbjct: 1 MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD+F Y + A K A+ D + ++ +E+ + GV +GSG+GG++
Sbjct: 61 DYMDKKEARKMDRFTQYAVVAAKMAVEDADL--NITDEI-APRVGVWVGSGIGGLETLES 117
Query: 282 AIEA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
E L ++++PF VP +M + +++ LG G N TACAT I +A
Sbjct: 118 QFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKV 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG+A+VM+ GG++A + + GF A +ALS N DP ASRP+D NRDGFVMGEGAG
Sbjct: 178 IQRGDADVMVTGGTEAPLTRMSFAGFSANKALST-NPDPKTASRPFDKNRDGFVMGEGAG 236
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGK 441
+++LEELEHA RGAKIY E G T DAYH+T P DG+
Sbjct: 237 IIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGE 277
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P0AAI8|FABF_SHIFL 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 173/275 (62%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 119 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+
Sbjct: 179 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 238
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
L+LEE EHAKKRGAKIYAE G +SDAYHMT P
Sbjct: 239 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Shigella flexneri (taxid: 623) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P0AAI5|FABF_ECOLI 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/275 (43%), Positives = 173/275 (62%), Gaps = 2/275 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 119 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+
Sbjct: 179 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 238
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
L+LEE EHAKKRGAKIYAE G +SDAYHMT P
Sbjct: 239 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 273
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 300507129 | 576 | KASII [Gossypium hirsutum] | 0.927 | 0.756 | 0.763 | 0.0 | |
| 225444641 | 555 | PREDICTED: 3-oxoacyl-[acyl-carrier-prote | 0.880 | 0.745 | 0.748 | 0.0 | |
| 346995771 | 573 | beta-ketoacyl-ACP synthase II [Jatropha | 0.891 | 0.731 | 0.720 | 0.0 | |
| 255550355 | 554 | 46 kDa ketoavyl-ACP synthase [Ricinus co | 0.889 | 0.754 | 0.720 | 1e-174 | |
| 1698690 | 540 | beta-ketoacyl-ACP synthase II [Cuphea wr | 0.836 | 0.727 | 0.742 | 1e-172 | |
| 297738522 | 517 | unnamed protein product [Vitis vinifera] | 0.804 | 0.731 | 0.717 | 1e-172 | |
| 297842241 | 543 | hypothetical protein ARALYDRAFT_476635 [ | 0.863 | 0.747 | 0.695 | 1e-171 | |
| 210110425 | 548 | beta-ketoacyl-ACP synthase II-1 [Arachis | 0.870 | 0.746 | 0.715 | 1e-171 | |
| 297742964 | 546 | unnamed protein product [Vitis vinifera] | 0.855 | 0.736 | 0.716 | 1e-171 | |
| 19698877 | 541 | putative 3-ketoacyl-ACP synthase [Arabid | 0.859 | 0.746 | 0.693 | 1e-170 |
| >gi|300507129|gb|ADK23940.1| KASII [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/444 (76%), Positives = 365/444 (82%), Gaps = 8/444 (1%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRK-LSAKC 59
M +S S SPLCTWLVAACMS T G P ++ R G A RRK L ++C
Sbjct: 1 MMASSSLASPLCTWLVAACMSVTYGKDQSRSPLFNSSASASSNRLGRWARNRRKALLSQC 60
Query: 60 GVGGEVVNGS--LVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNG-FSSFF 116
GG N L+SSF GS+ IQ LMASCL FEPC++YYSS + FFG NG FSSFF
Sbjct: 61 CGGGATPNKDVGLISSFRGST--IQGLMASCLAFEPCDDYYSSKNG-SFFGQNGSFSSFF 117
Query: 117 GSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVS 176
GS N NR Q+RL R SG+AMA+AVQP E+TTKKKP KQ+RVVVTGMG+V+
Sbjct: 118 GSKNVPFNKNREQKRLN-RRAHHSGQAMAIAVQPTREITTKKKPPTKQRRVVVTGMGVVT 176
Query: 177 PLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFM 236
PLGHEPDVFYNNLLEGVSGISEIETFDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFM
Sbjct: 177 PLGHEPDVFYNNLLEGVSGISEIETFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFM 236
Query: 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPF 296
LY LTAGKKAL DGG+ EDVM ELDK+KCG LIGS +GGMKVF DAIEALRISY+KMNPF
Sbjct: 237 LYSLTAGKKALQDGGVNEDVMEELDKTKCGALIGSAMGGMKVFNDAIEALRISYRKMNPF 296
Query: 297 CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDA
Sbjct: 297 CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDA 356
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
A+IPIGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAK+RGA
Sbjct: 357 AIIPIGLGGFVACRALSQRNNDPTKASRPWDANRDGFVMGEGAGVLLLEELEHAKRRGAT 416
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDG 440
IYAEF GGSFT DAYHMTEPHPDG
Sbjct: 417 IYAEFLGGSFTCDAYHMTEPHPDG 440
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444641|ref|XP_002276214.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/434 (74%), Positives = 364/434 (83%), Gaps = 20/434 (4%)
Query: 9 SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNG 68
SPLCTWLVAACMS T + +P S+++ R G +RR++ A+C + G
Sbjct: 4 SPLCTWLVAACMSVTADNEFAPKP-SMVQCSKRLSRWG----KRRRVLAQCS---DFARG 55
Query: 69 SLVSSFSGSSHSIQSLMASCLPFEPCNEYYSS--VSSLGFFGDNGFSSFFGSNNSTATLN 126
+SS SIQ L++SCL FEPC++Y SS + FFGDN SS FGS + LN
Sbjct: 56 GSISS------SIQGLVSSCLAFEPCDQYCSSKGLPYSAFFGDNALSSVFGSK--SLPLN 107
Query: 127 RRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFY 186
RRQRR NR + SGE MAVAVQP +EVTTKKKP +Q+RVVVTGMG++SP+GHEPD FY
Sbjct: 108 RRQRRT--NRGSHSGETMAVAVQPAKEVTTKKKPLTEQRRVVVTGMGVMSPIGHEPDSFY 165
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKA 246
NNLLEGVSGISEIE+FDC+ FPT+IA EIKSFSTDGW+APKLSKRMDKFMLY+LTAGKKA
Sbjct: 166 NNLLEGVSGISEIESFDCSHFPTRIAGEIKSFSTDGWIAPKLSKRMDKFMLYMLTAGKKA 225
Query: 247 LADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306
LADGGITEDV +ELDKS+CGVLIGS +GG+KVF DAIEALR+SY+KMNPFCVPFATTNMG
Sbjct: 226 LADGGITEDVTDELDKSRCGVLIGSAMGGIKVFNDAIEALRVSYRKMNPFCVPFATTNMG 285
Query: 307 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGF 366
SAMLAMDLGWMGPNYSISTACATSNFCILNA+NHIIRGEA++MLCGGSDAA+IPIGLGGF
Sbjct: 286 SAMLAMDLGWMGPNYSISTACATSNFCILNASNHIIRGEADMMLCGGSDAAIIPIGLGGF 345
Query: 367 VACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF 426
VACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF GGSF
Sbjct: 346 VACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFLGGSF 405
Query: 427 TSDAYHMTEPHPDG 440
T DAYHMTEPHPDG
Sbjct: 406 TCDAYHMTEPHPDG 419
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|346995771|gb|ABJ90469.2| beta-ketoacyl-ACP synthase II [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/458 (72%), Positives = 364/458 (79%), Gaps = 39/458 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRD---PH-----QPPSVLRRYTNNKREGLSAARR 52
M S SF SPLCTWLVAACMS TC + PH QP + L R+ +R+ L A
Sbjct: 1 MMGSASFASPLCTWLVAACMSVTCAKENRTAPHAFHSSQPSNRLSRWAR-RRKTLHAQYN 59
Query: 53 RKLSAKCGV----------GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVS 102
S E ++ SLVS+ GSS Q LM+SCL FEPC++YYSS
Sbjct: 60 SDSSNSIAAGGGGGGGGGYSTEFLSNSLVSTLCGSS--FQGLMSSCLAFEPCSQYYSS-- 115
Query: 103 SLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHM 162
NG F S N LNR+QRRL NR+ SGEAMA+AVQP++EV TKKKP
Sbjct: 116 -------NGL---FRSRN----LNRKQRRL--NRLALSGEAMAIAVQPEKEVATKKKPAT 159
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
KQ+RVVVTGMG+VSPLGHEPDVFYNNLLEGVSGIS+IE F+C FPT+IA EIKSFSTDG
Sbjct: 160 KQRRVVVTGMGVVSPLGHEPDVFYNNLLEGVSGISQIEAFECAQFPTRIAGEIKSFSTDG 219
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
W+APKLSKRMDKFMLY+LTAGKKALADGGITED+M+ELDK+KCGVLIGS +GGMKVF DA
Sbjct: 220 WIAPKLSKRMDKFMLYMLTAGKKALADGGITEDIMDELDKAKCGVLIGSAMGGMKVFNDA 279
Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
IEALR+SY+KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII
Sbjct: 280 IEALRVSYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 339
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
RGEA++MLCGGSDAA+IPIGLGGFVACRALSQRN+DP KASRPWD+NRDGFVMGEGAGVL
Sbjct: 340 RGEADIMLCGGSDAAIIPIGLGGFVACRALSQRNDDPAKASRPWDMNRDGFVMGEGAGVL 399
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
LLEELEHAKKRGA IYAEF GGSFT DAYHMTEP P G
Sbjct: 400 LLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPRPGG 437
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550355|ref|XP_002516228.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] gi|223544714|gb|EEF46230.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 317/440 (72%), Positives = 351/440 (79%), Gaps = 22/440 (5%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
M S S +SPLCTWLVAACMS TC + H + T S RRR K
Sbjct: 1 MMGSASLSSPLCTWLVAACMSVTCSKENRH---AFFSSSTPGTTSSHSRTRRRP---KYN 54
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
+ S +S S S S Q LM+SCL FEPC+ YYSS G F +
Sbjct: 55 SISTPASQSFFNSLSSSGSSFQQLMSSCLAFEPCSHYYSSN---GLFPN----------- 100
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
T L +R RL +R+ RSGEAMAVAVQP++EV T KKP MKQ+RVVVTGMG+VSPLGH
Sbjct: 101 -TPLLPKRHPRLH-HRLPRSGEAMAVAVQPEKEVATNKKPLMKQRRVVVTGMGVVSPLGH 158
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+ DV+YNNLL+G SGIS+I++FDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLY+L
Sbjct: 159 DIDVYYNNLLDGSSGISQIDSFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYML 218
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGGITED+M+ELDK++CGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPF
Sbjct: 219 TAGKKALADGGITEDMMDELDKARCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPF 278
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDAA+IP
Sbjct: 279 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADIMLCGGSDAAIIP 338
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRN+DPTKASRPWD+NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 339 IGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAE 398
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEP PDG
Sbjct: 399 FLGGSFTCDAYHMTEPRPDG 418
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1698690|gb|AAB37271.1| beta-ketoacyl-ACP synthase II [Cuphea wrightii] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/431 (74%), Positives = 351/431 (81%), Gaps = 38/431 (8%)
Query: 10 PLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGS 69
P CTWLVA+CMS T DP P ++R+ KR
Sbjct: 11 PFCTWLVASCMS-TSFDNDPRSPS--VKRFPRRKR------------------------- 42
Query: 70 LVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129
V S GS+ Q L+ASC+ +PC++Y SS +SL F GDNGF+S FGS + NR
Sbjct: 43 -VLSQRGST--FQCLVASCI--DPCDQYRSS-ASLSFLGDNGFASLFGSKPFMS--NRGH 94
Query: 130 RRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNL 189
RRLR R + SGEAMAVA+QP +E TKKKP +KQ+RVVVTGMG+V+PLGHEPDVFYNNL
Sbjct: 95 RRLR--RASHSGEAMAVALQPAQEAGTKKKPVIKQRRVVVTGMGVVTPLGHEPDVFYNNL 152
Query: 190 LEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD 249
L+GVSGISEIETFDCT FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD
Sbjct: 153 LDGVSGISEIETFDCTQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD 212
Query: 250 GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309
GGIT++VM ELDK KCGVLIGSG+GGMKVF DAIEALR+SYKKMNPFCVPFATTNMGSAM
Sbjct: 213 GGITDEVMKELDKRKCGVLIGSGMGGMKVFNDAIEALRVSYKKMNPFCVPFATTNMGSAM 272
Query: 310 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVAC 369
LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDA +IPIGLGGFVAC
Sbjct: 273 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDAVIIPIGLGGFVAC 332
Query: 370 RALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
RALSQRN+DPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF GGSFT D
Sbjct: 333 RALSQRNSDPTKASRPWDSNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCD 392
Query: 430 AYHMTEPHPDG 440
AYHMTEPHP+G
Sbjct: 393 AYHMTEPHPEG 403
|
Source: Cuphea wrightii Species: Cuphea wrightii Genus: Cuphea Family: Lythraceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738522|emb|CBI27767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 310/432 (71%), Positives = 337/432 (78%), Gaps = 54/432 (12%)
Query: 9 SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNG 68
SPLCTWLVAACMS T + +P V +KR RRR L
Sbjct: 4 SPLCTWLVAACMSVTADNEFAPKPSMV----QCSKRLSRWGKRRRGLP------------ 47
Query: 69 SLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRR 128
YS+ FFGDN SS FGS + LNRR
Sbjct: 48 -----------------------------YSA-----FFGDNALSSVFGSK--SLPLNRR 71
Query: 129 QRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNN 188
QRR NR + SGE MAVAVQP +EVTTKKKP +Q+RVVVTGMG++SP+GHEPD FYNN
Sbjct: 72 QRRT--NRGSHSGETMAVAVQPAKEVTTKKKPLTEQRRVVVTGMGVMSPIGHEPDSFYNN 129
Query: 189 LLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALA 248
LLEGVSGISEIE+FDC+ FPT+IA EIKSFSTDGW+APKLSKRMDKFMLY+LTAGKKALA
Sbjct: 130 LLEGVSGISEIESFDCSHFPTRIAGEIKSFSTDGWIAPKLSKRMDKFMLYMLTAGKKALA 189
Query: 249 DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308
DGGITEDV +ELDKS+CGVLIGS +GG+KVF DAIEALR+SY+KMNPFCVPFATTNMGSA
Sbjct: 190 DGGITEDVTDELDKSRCGVLIGSAMGGIKVFNDAIEALRVSYRKMNPFCVPFATTNMGSA 249
Query: 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA 368
MLAMDLGWMGPNYSISTACATSNFCILNA+NHIIRGEA++MLCGGSDAA+IPIGLGGFVA
Sbjct: 250 MLAMDLGWMGPNYSISTACATSNFCILNASNHIIRGEADMMLCGGSDAAIIPIGLGGFVA 309
Query: 369 CRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS 428
CRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF GGSFT
Sbjct: 310 CRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFLGGSFTC 369
Query: 429 DAYHMTEPHPDG 440
DAYHMTEPHPDG
Sbjct: 370 DAYHMTEPHPDG 381
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842241|ref|XP_002889002.1| hypothetical protein ARALYDRAFT_476635 [Arabidopsis lyrata subsp. lyrata] gi|297334843|gb|EFH65261.1| hypothetical protein ARALYDRAFT_476635 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 306/440 (69%), Positives = 347/440 (78%), Gaps = 34/440 (7%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +RRR+ +KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDTRQAVAL---------QSAGRSRRRRQLSKC- 51
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
SS SGS+ SIQ+L+ SCL F PC Y ++ ++ SS FGSN
Sbjct: 52 -----------SSASGSA-SIQALVTSCLDFGPCTHYNNNNNN-------ALSSLFGSN- 91
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 92 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAMVNKKPPTEQRRVVVTGMGVETSLGH 147
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 148 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 207
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T+DVM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 208 TAGKKALADGGVTDDVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 267
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 268 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 327
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 328 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 387
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEPHPDG
Sbjct: 388 FLGGSFTCDAYHMTEPHPDG 407
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|210110425|gb|ACJ07142.1| beta-ketoacyl-ACP synthase II-1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 314/439 (71%), Positives = 350/439 (79%), Gaps = 30/439 (6%)
Query: 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGV 61
+++ S SPLCTWLVAACMS TC + P + LR ++R +L
Sbjct: 4 SAASSMASPLCTWLVAACMSVTCHADRAGTPKAALRSSKRSRRTKALPPNTSQL------ 57
Query: 62 GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNS 121
N L+SS GSS IQ L++S FEPC++Y ++ N FSS F S
Sbjct: 58 -----NMRLISSLYGSS--IQGLISS---FEPCDDYCNT--------HNAFSSLFRST-- 97
Query: 122 TATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHE 181
T NRR RL N++ SG+ MAVAV+P EVTT KKP KQ+RVVVTG+G+V+PLGHE
Sbjct: 98 --TPNRRHTRL--NKLAHSGKTMAVAVEPAHEVTTTKKPPTKQRRVVVTGLGVVTPLGHE 153
Query: 182 PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241
PDV+YNNLL+GVSGISEIETFDC +PT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLT
Sbjct: 154 PDVYYNNLLDGVSGISEIETFDCAEYPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLT 213
Query: 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFA 301
AGKKAL DGGITEDVM+EL+K KCGVLIGS +GGMKVF DAIEALR+SYKKMNPFCVPFA
Sbjct: 214 AGKKALVDGGITEDVMDELNKEKCGVLIGSAMGGMKVFNDAIEALRVSYKKMNPFCVPFA 273
Query: 302 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361
TTNMGSA+LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA+VMLCGGSDAA+IPI
Sbjct: 274 TTNMGSAILAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPI 333
Query: 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF 421
GLGGFVACRALSQRN DPTKASRPWDINRDGFVMGEGAGVLLLE+LEHAKKRGA IYAEF
Sbjct: 334 GLGGFVACRALSQRNTDPTKASRPWDINRDGFVMGEGAGVLLLEDLEHAKKRGATIYAEF 393
Query: 422 RGGSFTSDAYHMTEPHPDG 440
GGSFT DAYH+TEP PDG
Sbjct: 394 LGGSFTCDAYHVTEPRPDG 412
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742964|emb|CBI35831.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 321/448 (71%), Positives = 348/448 (77%), Gaps = 46/448 (10%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDP-----HQPPSVLRRYTNNKREGLSAARRRKL 55
MA+S S SPLCTWLVAACMS C P Q P L R
Sbjct: 1 MAAS-SVASPLCTWLVAACMSVACEKDHPLKSSMFQTPKRLSR----------------- 42
Query: 56 SAKCGVGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSL---GFFGDNGF 112
+SSF GSS I +LM+SCL FEPC Y SS FFGDNGF
Sbjct: 43 -------------GWISSFYGSS--IHNLMSSCLAFEPCEAYSSSKGLSSSLAFFGDNGF 87
Query: 113 SSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGM 172
S FGS S +N RQR R+NR S + MAVAV+P EVT KKKP KQ+RVVVTGM
Sbjct: 88 -SLFGSKPS--PMNHRQR--RMNRAAHSDKNMAVAVKPAAEVTAKKKPLTKQRRVVVTGM 142
Query: 173 GLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRM 232
G+V+P+GH+ DVFYNNLLEGVSGISEIE FDC FPT+IA EIKSFSTDGWVAPKLSKR
Sbjct: 143 GVVTPVGHDLDVFYNNLLEGVSGISEIEAFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRA 202
Query: 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKK 292
DKFMLY+LTAGKKALADGG+TEDVM+ELDK++CGVLIGS +GGMKVF DAIEALRISY+K
Sbjct: 203 DKFMLYMLTAGKKALADGGVTEDVMSELDKARCGVLIGSAMGGMKVFNDAIEALRISYRK 262
Query: 293 MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCG 352
MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE ++MLCG
Sbjct: 263 MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGETDMMLCG 322
Query: 353 GSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKK 412
GSDAA+IPIGLGGFVACRALSQRN+DP KASRPWDINRDGFVMGEGAGVLLLEELEHAK+
Sbjct: 323 GSDAAIIPIGLGGFVACRALSQRNSDPAKASRPWDINRDGFVMGEGAGVLLLEELEHAKR 382
Query: 413 RGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
RGA IYAEF GGSFT DAYHMTEPHP+G
Sbjct: 383 RGANIYAEFLGGSFTCDAYHMTEPHPEG 410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19698877|gb|AAL91174.1| putative 3-ketoacyl-ACP synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 305/440 (69%), Positives = 343/440 (77%), Gaps = 36/440 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +R LS KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDSRQAVALQSGGRSRRRRQLS---------KCS 52
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
V SGS+ SIQ+L+ SCL F PC Y + +N SS FGSN
Sbjct: 53 VA------------SGSA-SIQALVTSCLDFGPCTHYNN---------NNALSSLFGSN- 89
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 90 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGH 145
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 146 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 205
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T++VM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 206 TAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 265
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 266 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 325
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 326 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 385
Query: 421 FRGGSFTSDAYHMTEPHPDG 440
F GGSFT DAYHMTEPHPDG
Sbjct: 386 FLGGSFTCDAYHMTEPHPDG 405
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| TAIR|locus:2027252 | 541 | FAB1 "fatty acid biosynthesis | 0.638 | 0.554 | 0.794 | 1.9e-138 | |
| UNIPROTKB|Q9KQH9 | 414 | fabF "3-oxoacyl-[acyl-carrier- | 0.625 | 0.710 | 0.421 | 2.5e-56 | |
| TIGR_CMR|VC_2019 | 414 | VC_2019 "3-oxoacyl-(acyl-carri | 0.625 | 0.710 | 0.421 | 2.5e-56 | |
| TIGR_CMR|CHY_1445 | 412 | CHY_1445 "3-oxoacyl-(acyl-carr | 0.587 | 0.669 | 0.410 | 1.8e-55 | |
| TIGR_CMR|CBU_0497 | 414 | CBU_0497 "3-oxoacyl-acyl carri | 0.589 | 0.669 | 0.427 | 4.8e-55 | |
| TIGR_CMR|GSU_1605 | 410 | GSU_1605 "3-oxoacyl-(acyl-carr | 0.597 | 0.685 | 0.417 | 1.3e-54 | |
| TIGR_CMR|SO_2774 | 412 | SO_2774 "3-oxoacyl-(acyl-carri | 0.606 | 0.691 | 0.404 | 2.6e-54 | |
| UNIPROTKB|P0AAI5 | 413 | fabF "FabF" [Escherichia coli | 0.593 | 0.675 | 0.420 | 1.9e-53 | |
| TIGR_CMR|CPS_2299 | 412 | CPS_2299 "3-oxoacyl-[acyl-carr | 0.587 | 0.669 | 0.414 | 4.9e-53 | |
| TIGR_CMR|ECH_0882 | 422 | ECH_0882 "3-oxoacyl-(acyl-carr | 0.627 | 0.699 | 0.379 | 3.5e-52 |
| TAIR|locus:2027252 FAB1 "fatty acid biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1272 (452.8 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
Identities = 239/301 (79%), Positives = 262/301 (87%)
Query: 140 SGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI 199
SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH+P FY NLL+G SGIS+I
Sbjct: 106 SGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGHDPHTFYENLLQGNSGISQI 164
Query: 200 ETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNE 259
E FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLLTAGKKALADGG+T++VM E
Sbjct: 165 ENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLLTAGKKALADGGVTDEVMAE 224
Query: 260 LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319
DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP
Sbjct: 225 FDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 284
Query: 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDP 379
NYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IPIGLGGFVACRALSQRNNDP
Sbjct: 285 NYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIPIGLGGFVACRALSQRNNDP 344
Query: 380 TKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
TKASRPWD NRDGFVM HAKKRGA IYAEF GGSFT DAYHMTEPHPD
Sbjct: 345 TKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCDAYHMTEPHPD 404
Query: 440 G 440
G
Sbjct: 405 G 405
|
|
| UNIPROTKB|Q9KQH9 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 126/299 (42%), Positives = 184/299 (61%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNFSVQMKSLNG 459
HAK RGAKIYAE G + DAYHMT P DG S +L + +++ + G
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDG-SGGALAMEAAMRDAGVTG 295
|
|
| TIGR_CMR|VC_2019 VC_2019 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 126/299 (42%), Positives = 184/299 (61%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNFSVQMKSLNG 459
HAK RGAKIYAE G + DAYHMT P DG S +L + +++ + G
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDG-SGGALAMEAAMRDAGVTG 295
|
|
| TIGR_CMR|CHY_1445 CHY_1445 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 115/280 (41%), Positives = 173/280 (61%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+GL+SPLG ++NL++GVSG+ E+ +FD T F T+IAAE++ F ++
Sbjct: 2 KRVVVTGLGLISPLGIGIKENWDNLMKGVSGVREVSSFDTTGFATRIAAEVRDFDPLKFI 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K ++RMD+F + + A K A+ D G+ +++++ + G+ IGSG+GG+K +
Sbjct: 62 DKKEARRMDRFTQFAVAATKLAIEDAGLE---LSKINPERAGIFIGSGIGGIKTLEEQAA 118
Query: 285 ALRISYK-KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
LR +++PF VP NM +A+ G GPN +I +ACA+ + +A + R
Sbjct: 119 ILREKGPDRVSPFFVPMMIANMAGGQIAITFGLTGPNETIVSACASGANAVGDAFRCLQR 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GE +V + GG++AA+ P+ GF + +A+S RN++P KASRP+D +RDGFVM
Sbjct: 179 GEVDVAIAGGAEAAITPLSFAGFCSMKAMSTRNDEPEKASRPFDKDRDGFVMGEGAGILI 238
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
HA RGA+IY E G TSDAYH+T P P+GK A
Sbjct: 239 LETLEHALARGARIYGEIVGYGVTSDAYHITAPDPEGKGA 278
|
|
| TIGR_CMR|CBU_0497 CBU_0497 "3-oxoacyl-acyl carrier protein synthase II" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 120/281 (42%), Positives = 170/281 (60%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M+++RVV+TG+G+VSPLG++ + LL G SG+ I FD +SFPT+IAAE++ F
Sbjct: 1 MEKRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPA 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++ D F+ + + + ++A D G+ +NE + + GV IGSG+GGM
Sbjct: 61 LVLDLKSIRKTDVFVQFAMESARQAWEDSGLE---INETNAPRVGVAIGSGIGGMPWIEK 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL S +K++PF +P A NM S M+++ GPN SI TAC T I +AA
Sbjct: 118 NYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I +A+ M+ GG++ A P+G+GGF A RALS RN++P KASRPWD RDGFV+
Sbjct: 178 IAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAA 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGK 441
HAKKR A IYAE G + DAYHMT P P+ +
Sbjct: 238 CVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAE 278
|
|
| TIGR_CMR|GSU_1605 GSU_1605 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 121/290 (41%), Positives = 171/290 (58%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G VSPLG ++ L+ G SGI I FD + P +IA E+K F + ++
Sbjct: 2 RRVVVTGVGAVSPLGVGNAANWDALVSGTSGIGHITRFDASDLPVRIAGEVKGFDPEQYI 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF--YDA 282
K K+MD F+ Y + A A+ D G+ + E + + GVL+G+GLGG+ Y A
Sbjct: 62 DKKEVKKMDLFIQYAMAAAHYAMEDSGLQ---ITEENAERTGVLVGAGLGGLPTIEKYHA 118
Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
L +KK++PF +P N+ +++ G GPN S +ACAT I +A + I
Sbjct: 119 A-MLEGGHKKISPFFIPMLIINLAPGHISIKYGAKGPNLSSVSACATGTHSIGDAYHMIK 177
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXX 402
RG+A+ M+ GG+++ V P+G+GGF +ALS RN+DPT ASRP++ NRDGFV+
Sbjct: 178 RGDADAMIAGGTESTVTPLGIGGFAVMKALSTRNDDPTAASRPFEKNRDGFVLAEGAGIV 237
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA---MSLRLN 449
AKKRGAKIYAE G T DAYH+T P P+G+ A M + LN
Sbjct: 238 VLEEYEAAKKRGAKIYAEIVGYGLTGDAYHLTAPAPEGEGAARCMKMALN 287
|
|
| TIGR_CMR|SO_2774 SO_2774 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 117/289 (40%), Positives = 173/289 (59%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+GLV+P+G+ D + LL G SGI+ I FD + F T+ + +K F +
Sbjct: 1 MSKRRVVVTGLGLVTPVGNTVDTTWKALLSGKSGIAPITKFDASEFTTRFSGSVKDFDVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD F+ Y + AG +A+ D G+ M++++ + G IG+G+GGM +
Sbjct: 61 QYLTKKDARKMDLFIQYGMAAGIQAIQDSGLD---MSKVNPGRVGTAIGAGMGGMWLIEQ 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
AL +K++PF VP NM + L++ G GPN++++TAC T I AA
Sbjct: 118 NHSALMNGGPRKISPFFVPSTIINMIAGHLSIMYGMTGPNFAVTTACTTGVHNIGFAART 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+VM+ GG++ P+G+GGF A +ALS RN+DPT ASRPWD +RDGFV+
Sbjct: 178 IAYGDADVMVAGGAEDVTCPLGVGGFGAAKALSTRNDDPTAASRPWDKDRDGFVIGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN 449
HAK RGA IY E G + DA+HMT P DG A + +N
Sbjct: 238 VMVMEEYEHAKARGATIYGELVGFGMSGDAFHMTSPPSDGAGAAAAMVN 286
|
|
| UNIPROTKB|P0AAI5 fabF "FabF" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 119/283 (42%), Positives = 174/283 (61%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ + E + ++ G IGSG+GG+ + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEE 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+L +K++PF VP NM + L + G GP+ SI+TAC + I +AA
Sbjct: 118 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 178 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
HAKKRGAKIYAE G +SDAYHMT P +G A
Sbjct: 238 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGA 280
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| TIGR_CMR|CPS_2299 CPS_2299 "3-oxoacyl-[acyl-carrier-protein] synthase II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 117/282 (41%), Positives = 169/282 (59%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G++SPL + + + NLL G SGI I+ FD T +PTK A +K F ++
Sbjct: 2 RRVVVTGIGMLSPLANTAEETWQNLLLGKSGIGNIDHFDTTDYPTKFAGLVKDFDAQNYM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF---YD 281
K +K+MD F+ Y + AG +A D G+ + E + + GV IGSG+GG+ + ++
Sbjct: 62 ERKEAKKMDLFIQYGIAAGVQAFKDSGLE---VTEQNAPRIGVAIGSGIGGLGLIEQNHN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ + +K++PF VP NM + L++ G GPN +I+TAC + I +AA I
Sbjct: 119 KLIKAEGNPRKLSPFFVPSTIINMIAGHLSIMFGLQGPNIAITTACTSGVHNIGHAARMI 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+ ++ GG++ A +G+GGF A RALS+RN+DP ASRPWD +RDGFV+
Sbjct: 179 AYGDADAVVAGGAEKASTTLGMGGFGAARALSRRNDDPEAASRPWDKDRDGFVLGDGAGV 238
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
HAK RGAKIYAE G + DAYHMT P +G A
Sbjct: 239 IVVEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPPENGDGA 280
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| TIGR_CMR|ECH_0882 ECH_0882 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 118/311 (37%), Positives = 185/311 (59%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS---- 217
M +KRVV+TG+GLV+ LG + +++L +G+SGI +I+ FD + K+A ++ +
Sbjct: 1 MAKKRVVITGLGLVTSLGSDLKTVWDSLSKGISGIRKIDRFDTSDLDCKVAGQVTTKPES 60
Query: 218 ----FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
F ++ K K+MD F+ + + + +A+ D + + +LD S+ GV++GSG+
Sbjct: 61 EEYIFDAGDYIPEKDLKKMDTFIHFGIASATQAINDSNLLD--YKDLDYSRVGVIVGSGI 118
Query: 274 GGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG++ + L+ K+++PF +P + N+ S ++M G+ G N ++ TAC+T
Sbjct: 119 GGLQFIEKTVICLKERGPKRISPFFIPASLINLTSGHISMKYGFTGLNDAVVTACSTGAQ 178
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRD 391
I NAA I GEA+V++ GG+++A+ IG+ GF A +ALS + ND P ASRPWD RD
Sbjct: 179 AIGNAARVIQSGEADVIIAGGTESAICRIGIAGFAAMKALSTKFNDTPELASRPWDKQRD 238
Query: 392 GFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM-SLRL-- 448
GFVM HAKKRGA+IY E G TSDAYHM+ PHP+GK + S+ L
Sbjct: 239 GFVMGEGSGVVILEDYEHAKKRGARIYGELLGYGMTSDAYHMSAPHPEGKGGIKSIELAL 298
Query: 449 -NFSVQMKSLN 458
N + +S+N
Sbjct: 299 SNAQLNPESIN 309
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9P4 | KASC2_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.6931 | 0.8595 | 0.7467 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.2__1765__AT1G74960.1 | annotation not avaliable (543 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.4__990__AT2G30200.1 | annotation not avaliable (367 aa) | • | • | • | • | • | • | 0.955 | ||
 | fgenesh2_kg.2__215__AT1G62640.1 | annotation not avaliable (404 aa) | • | • | • | • | • | 0.945 | |||
 | fgenesh2_kg.6__977__AT5G10160.1 | annotation not avaliable (219 aa) | • | • | • | • | 0.777 | ||||
 | fgenesh2_kg.4__146__AT2G22230.1 | annotation not avaliable (224 aa) | • | • | • | • | 0.748 | ||||
 | fgenesh1_pm.C_scaffold_8000016 | annotation not avaliable (97 aa) | • | • | • | 0.703 | |||||
 | scaffold_303363.1 | annotation not avaliable (390 aa) | • | • | • | 0.664 | |||||
 | scaffold_200993.1 | annotation not avaliable (126 aa) | • | • | 0.578 | ||||||
 | scaffold_703504.1 | annotation not avaliable (127 aa) | • | • | • | 0.573 | |||||
 | fgenesh2_kg.7__3034__AT5G35360.1 | annotation not avaliable (537 aa) | • | • | • | 0.550 | |||||
 | fgenesh2_kg.4__2654__AT2G44620.1 | annotation not avaliable (122 aa) | • | • | • | 0.544 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 0.0 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 1e-129 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 1e-129 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 1e-126 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 1e-119 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-102 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 7e-85 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 6e-83 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 3e-79 | |
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 1e-72 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 4e-62 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 5e-55 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 2e-48 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 1e-47 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 3e-40 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 6e-39 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 6e-38 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 8e-33 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 4e-32 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 5e-31 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 4e-26 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 2e-24 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 1e-17 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 5e-17 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 2e-12 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 1e-10 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 5e-10 | |
| PRK06519 | 398 | PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protei | 2e-05 | |
| PRK08963 | 428 | PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | 1e-04 | |
| cd00829 | 375 | cd00829, SCP-x_thiolase, Thiolase domain associate | 0.003 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 0.004 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 689 bits (1780), Expect = 0.0
Identities = 323/437 (73%), Positives = 346/437 (79%), Gaps = 35/437 (8%)
Query: 4 SCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGG 63
S S SPLCTWLVAACMS +C D HQ ++ + G + RRRK G
Sbjct: 3 SASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGRSRRRRKRRKCSSASG 54
Query: 64 EVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTA 123
CL F PC Y SS G N SS FGSN+ +
Sbjct: 55 SASILVTS----------------CLAFGPCTHYNSS-------GGNALSSLFGSNSVS- 90
Query: 124 TLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPD 183
LNR QRR NR RSG+AMAVAVQP++EV TKKKP KQ+RVVVTGMG+VSPLGH+PD
Sbjct: 91 -LNRNQRRR--NRAARSGKAMAVAVQPEKEVETKKKPLTKQRRVVVTGMGVVSPLGHDPD 147
Query: 184 VFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243
VFYNNLLEGVSGISEIE FDC+ FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAG
Sbjct: 148 VFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207
Query: 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT 303
KKALADGGITEDVM ELDK+KCGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPFATT
Sbjct: 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATT 267
Query: 304 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL 363
NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA+VMLCGGSDAA+IPIGL
Sbjct: 268 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGL 327
Query: 364 GGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRG 423
GGFVACRALSQRN+DPTKASRPWD+NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF G
Sbjct: 328 GGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLG 387
Query: 424 GSFTSDAYHMTEPHPDG 440
GSFT DAYHMTEPHP+G
Sbjct: 388 GSFTCDAYHMTEPHPEG 404
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Length = 540 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 379 bits (977), Expect = e-129
Identities = 135/280 (48%), Positives = 191/280 (68%), Gaps = 4/280 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G V+PLG+ + F+ NLL G SGI I FD + P KIA E+K F + ++
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K ++RMD+F+ Y L A K+A+ D G+ + E D + GV+IGSG+GG++ +
Sbjct: 61 DKKEARRMDRFIQYALAAAKEAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHI 117
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L ++++PF +P + NM + +++ G GPN+++ TACAT I +A I R
Sbjct: 118 VLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQR 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G+A+VM+ GG++AA+ P+G+ GF A +ALS RN+DP KASRP+D +RDGFVMGEGAGVL+
Sbjct: 178 GDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
LEELEHAK RGAKIYAE G + DAYH+T P P+G+ A
Sbjct: 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGA 277
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3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-129
Identities = 139/280 (49%), Positives = 191/280 (68%), Gaps = 4/280 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G V+PLG+ + F+ LL G SGI I FD + FP++IA E+ F + ++
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +RMD+F + L A ++ALAD G+ + ELD + GV+IGSG+GG+ +A
Sbjct: 61 DRKELRRMDRFAQFALAAAEEALADAGLDPE---ELDPERIGVVIGSGIGGLATIEEAYR 117
Query: 285 ALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
AL ++++PF VP A NM + +A+ LG GPNY++STACA+ I +AA I
Sbjct: 118 ALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G A+V++ GG++A + P+ L GF A RALS RN+DP KASRP+D +RDGFV+GEGAGVL+
Sbjct: 178 GRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
LE LEHAK RGAKIYAE G +SDAYH+T P PDG+ A
Sbjct: 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGA 277
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KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-126
Identities = 141/285 (49%), Positives = 191/285 (67%), Gaps = 14/285 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G VSPLG++ + + NLL G SGI I FD + KIA E+K F+ D ++
Sbjct: 2 RRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ K ++RMD+F+ Y + A K+A+ D G+ + E + + GV+IGSG+GG++ +
Sbjct: 62 SRKEARRMDRFIQYGIAAAKQAVEDAGL---EITEENADRIGVIIGSGIGGLETIEEQHI 118
Query: 285 AL------RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
L R+S PF VP A NM + +++ G GPN+SI TACAT I +AA
Sbjct: 119 TLLEKGPRRVS-----PFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAA 173
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398
I G+A+VM+ GG++AA+ P+G+ GF A RALS RN+DP +ASRP+D +RDGFVMGEG
Sbjct: 174 RLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEG 233
Query: 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
AG+L+LEELEHAK RGAKIYAE G T DAYHMT P PDG+ A
Sbjct: 234 AGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGA 278
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Length = 411 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 355 bits (912), Expect = e-119
Identities = 124/292 (42%), Positives = 173/292 (59%), Gaps = 12/292 (4%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS---- 217
M +KR+VVTGMG VSPLG + F+ LL G SGI + F TKI ++
Sbjct: 1 MNKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAED 60
Query: 218 ----FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
F D ++ PK ++MD+F+L+ + A K+ALA G D D+ + +IGSG+
Sbjct: 61 AEAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPD--TLEDRERTATIIGSGV 118
Query: 274 GGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG +A+ L ++++PF +P TNM + +++ G+ GP + TACA
Sbjct: 119 GGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQ 178
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRD 391
I +AA I GEA+V +CGG++AA+ + L GF A RALS R ND P +ASRP+D +RD
Sbjct: 179 AIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRD 238
Query: 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
GFVMGEGAG+L++E LEHA RGA AE G ++DAYHMT DG+ A
Sbjct: 239 GFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGA 290
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Length = 424 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = e-102
Identities = 132/281 (46%), Positives = 178/281 (63%), Gaps = 7/281 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+VS LG+ + + LL G SGI I FD + KIA EIK D +
Sbjct: 3 RRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
A K + MD+F + A +AL D G+ + + GV IGSG+GG++ ++
Sbjct: 61 AKKERRFMDRFSQLAVVAAVEALEDAGLDNE---LNVDMRVGVAIGSGIGGLEDIEFDLD 117
Query: 285 ALRISY--KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
AL + K+++PF VP N+ + +A+ G GPNY+ TACAT I +A I
Sbjct: 118 ALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIR 177
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
G+A+V++ GG++AA+ P+G+ GF A RALS RN+DP KASRP+D NRDGFV+GEGAG L
Sbjct: 178 LGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGAL 237
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+LEELEHA RGAKIYAE G TSDAYH+T P PDG+ A
Sbjct: 238 VLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGA 278
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Length = 412 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 7e-85
Identities = 124/281 (44%), Positives = 170/281 (60%), Gaps = 12/281 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+G+++ LG + + + G GI +I FD + FP +IA EI F +
Sbjct: 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
PK K+ D+F+ L A ++A+ D G + ELD + GV SG+GG+ IE
Sbjct: 62 DPKEVKKADRFIQLGLKAAREAMKDAGFLPE---ELDAERFGVSSASGIGGLP----NIE 114
Query: 285 ALRISY-----KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
I +K++PF +P A NM ++++ G GPN S TACA I+ A
Sbjct: 115 KNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVK 174
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I+ G A+ ML G+++A+ P+G+GGF A +ALS RN+DP KASRP+D +RDGFVMGEGA
Sbjct: 175 TIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
G L+LEE E AKKRGAKIYAE G + DA H+T P P+G
Sbjct: 235 GALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPEG 275
|
Length = 406 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 6e-83
Identities = 130/280 (46%), Positives = 185/280 (66%), Gaps = 4/280 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F+ +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ + E + + GV IGSG+GG+ +
Sbjct: 61 EYMSKKDARKMDLFIQYGIAAGIQALDDSGLE---VTEENAHRIGVAIGSGIGGLGLIEA 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+G+GAG
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
+++LEE EHAK RGAKIYAE G + DAYHMT P DG
Sbjct: 238 MMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDG 277
|
Length = 414 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 3e-79
Identities = 113/288 (39%), Positives = 170/288 (59%), Gaps = 21/288 (7%)
Query: 174 LVSPLGHEPDVFYNNLLEGVSGISEIETFDC----------------TSFPTKIAAEIKS 217
+V+PLG + + L+ G SGI ++ F + P +IAAE+
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
D +KR + + + A ++ALAD + D+++E D+ + GV IGSG+G +
Sbjct: 61 SEFDP-SDFAPTKRESRATHFAMAAAREALADAKL--DILSEKDQERIGVNIGSGIGSLA 117
Query: 278 VFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
D ++ L + +++P+ +P NM + ++A+ GP+ S TACAT CI
Sbjct: 118 DLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGE 177
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVM 395
A I GEA++M+CGG++A++ P+ GF RAL + N+DP +ASRP+D +R GFVM
Sbjct: 178 AFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVM 237
Query: 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
GEGAG+L+LEELEHA +RGAKIYAE RG +SDA+H+T PHPDG+ A
Sbjct: 238 GEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGA 285
|
Length = 421 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 1e-72
Identities = 118/310 (38%), Positives = 180/310 (58%), Gaps = 33/310 (10%)
Query: 160 PHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI-------ETFDCT------- 205
P + +RVVVTG+GLV+PLG + + L+ G G+ + ++ D
Sbjct: 1 PPLPTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLD 60
Query: 206 SFPTKIAAEIKS------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADG--GITEDVM 257
P+++AA + F + W+ S+ +F+ Y L A +AL+D +ED
Sbjct: 61 QLPSRVAALVPRGTGPGDFDEELWLN---SRSSSRFIGYALCAADEALSDARWLPSEDE- 116
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYK--KMNPFCVPFATTNMGSAMLAMDLG 315
K + GV IG G+G + +A L + +++PF VP NM + +++ G
Sbjct: 117 ---AKERTGVSIGGGIGSITDILEA-AQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172
Query: 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375
+ GPN++ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS +
Sbjct: 173 FQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTK 232
Query: 376 NND-PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT 434
N PT+ASRP+D +RDGFV+GEGAGVL+LEELEHAK+RGAKIYAE RG + DA+H+T
Sbjct: 233 FNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHIT 292
Query: 435 EPHPDGKSAM 444
+PH DG+ A+
Sbjct: 293 QPHEDGRGAV 302
|
Length = 437 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 4e-62
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 20/254 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDG 222
+ V +TGMG P G P+ F+ LL G I E D + P+++A EI F D
Sbjct: 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPA-DLSGLYPPSRVAGEIYGFDFDA 60
Query: 223 W---VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF 279
++P+ ++ MD L A +AL D G+ + D+ GV +GSG G
Sbjct: 61 AFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDR--TGVFVGSGSG----D 114
Query: 280 YDAIEALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
Y ++AL ++++P+ ++ + ++ LG GP+ ++ TAC++S L+A
Sbjct: 115 YAELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSS-LVALHA 173
Query: 338 A-NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396
A I RGE ++ L GG +A + P G GF A AL + P KA P+ DGFV G
Sbjct: 174 AVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP-DGPCKAFDPFA---DGFVRG 229
Query: 397 EGAGVLLLEELEHA 410
EG G +LL+EL A
Sbjct: 230 EGVGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 5e-55
Identities = 108/285 (37%), Positives = 155/285 (54%), Gaps = 20/285 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+VS +G+ +L EG SGI+ F +++ +K G +
Sbjct: 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-LDPTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITED-VMNELDKSKCGVLIGSGLGGMKVFYDAI 283
K+ + M Y A ++A+AD G++E+ V N + G++ GSG G + +A
Sbjct: 61 DRKVMRFMGDASAYAYLAMEQAIADAGLSEEQVSNP----RTGLIAGSGGGSTRNQVEAA 116
Query: 284 EALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+A+R K++ P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 117 DAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQI 176
Query: 342 IRGEANVMLCGGSD-----AAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVM 395
G+ +++ GG + + + F A ALS + ND P KASR +D NRDGFV+
Sbjct: 177 QLGKQDIVFAGGGEELDWEMSCL------FDAMGALSTKYNDTPEKASRAYDANRDGFVI 230
Query: 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 440
G GV+++EELEHA RGAKIYAE G TSD Y M P +G
Sbjct: 231 AGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEG 275
|
Length = 406 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 2e-48
Identities = 96/274 (35%), Positives = 145/274 (52%), Gaps = 14/274 (5%)
Query: 166 RVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
RVV+TG+G+VSP G E + F+ L EG SGI+ + + F +A +I + G
Sbjct: 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGDIPG 60
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
W A + + +D+ L L A ++ALAD GIT+ E+ S+ GV++GSG+GG++
Sbjct: 61 WDAKR-TGIVDRTTLLALVATEEALADAGITDP--YEVHPSEVGVVVGSGMGGLRFLRRG 117
Query: 283 IEALRISYKKMNPFCVP--FATTNMGSAMLAMDL-GWMGPNYSISTACATSNFCILNAAN 339
+ + +NP+ P + N + + + L GP + ACAT+ + A
Sbjct: 118 GKLD---ARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVE 174
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I G+A++++ GG + + GL GF ALS +P + SRP+D RDGFV EGA
Sbjct: 175 AIRSGKADIVVVGGVED-PLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFVEAEGA 233
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHM 433
GVL+LE E A RGA IY G + T+D
Sbjct: 234 GVLVLERAELALARGAPIYGRVAGTASTTDGAGR 267
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 1e-47
Identities = 88/284 (30%), Positives = 140/284 (49%), Gaps = 16/284 (5%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGI-----SEIETFDCTSFPTKIAAEIKSFSTD 221
VVVTG+ + + L + + + LL+G SGI +E FD P +I + D
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFD---LPVRIGGHLLE-EFD 69
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ +RM G++ + G E +D ++ V IG+GLG +
Sbjct: 70 HQLTRVELRRMSYLQRMSTVLGRRVWENAGSPE-----VDTNRLMVSIGTGLGSAEELVF 124
Query: 282 AIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
A + +R + ++P V N +A + ++ + +ACA+ + I A
Sbjct: 125 AYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQ 184
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRA-LSQRNNDPTKASRPWDINRDGFVMGEGA 399
I+ GEA++ +CGG + + + + GF R +S N+DP A RP+D +RDGFV GEG
Sbjct: 185 IVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGG 244
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
++++E EHAK RGA I A G S TSD +HM P P+G+ A
Sbjct: 245 ALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERA 288
|
Length = 418 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 3e-40
Identities = 99/300 (33%), Positives = 133/300 (44%), Gaps = 22/300 (7%)
Query: 156 TKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEI 215
T + H+ + V VTGMG+V+ LG + L G SGI I F T+IA +
Sbjct: 2 TAYRDHLGRPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTV 61
Query: 216 KSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMN----------ELDKSKC 265
+ A LS+ + + A ++ALA GI + EL+
Sbjct: 62 DFLPESPFGASALSEALAR------LAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPAR 115
Query: 266 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS--AMLAMDLGWMGPNYSI 323
L + YD + LR + + F GS LA G G S+
Sbjct: 116 FALAAAVGDNDAPSYDRL--LRAA--RGGRFDALHERFQFGSIADRLADRFGTRGLPISL 171
Query: 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383
STACA+ I I RGE + LC +D +V L F ALS +N+ P KAS
Sbjct: 172 STACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKAS 231
Query: 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+P+ +RDGFVM EGAG L+LE LE A RGAKI G +D++H T PDG A
Sbjct: 232 KPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPA 291
|
Length = 425 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 6e-39
Identities = 103/315 (32%), Positives = 140/315 (44%), Gaps = 48/315 (15%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGW 223
+RVVVTGMG V+ LG + L G + + + +D T++AA I F
Sbjct: 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAH 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
K + M + L A + AL D G+ D + L + G+ GS G D I
Sbjct: 62 YTRKKIRSMGRVSLMATRASELALEDAGLLGDPI--LTDGRMGIAYGSSTGST----DPI 115
Query: 284 EAL-------------RISYKKMNPFCVPFATT--NMGSAMLAMDLGWMGPNYSISTACA 328
A +Y +M P TT N+G + G G S+AC
Sbjct: 116 GAFGTMLLEGSMSGITATTYVRMMPH-----TTAVNVG-----LFFGLKGRVIPTSSACT 165
Query: 329 TSNFCILNAANHIIRGEANVMLCGG------SDAAVIPIGLGGFVACRALSQRNNDPTKA 382
+ + I A I G VML GG ++AAV F A S RN+ P
Sbjct: 166 SGSQGIGYAYEAIKYGYQTVMLAGGAEELCPTEAAV-------FDTLFATSTRNDAPELT 218
Query: 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKS 442
RP+D NRDG V+GEGAG L+LEELEHAK RGA IYAE G SD H+T+P +
Sbjct: 219 PRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAE--- 275
Query: 443 AMSLRLNFSVQMKSL 457
M + + +++ L
Sbjct: 276 TMQIAMELALKDAGL 290
|
Length = 405 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (355), Expect = 6e-38
Identities = 83/191 (43%), Positives = 112/191 (58%), Gaps = 8/191 (4%)
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMD 313
N + + +IG+G+GG F A+R S K+++PF VP N+ + +++
Sbjct: 21 NTEKQERTATIIGAGIGG---FPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIK 77
Query: 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS 373
+ GP + TACA I +A I EA+V LCGG++A + + L GF A RALS
Sbjct: 78 HHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALS 137
Query: 374 QR-NNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH 432
N+ P KASRP+D RDGFVMGEGAG+L++EELEHA RGAK AE G ++DAYH
Sbjct: 138 THFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYH 197
Query: 433 MTEPHPDGKSA 443
MT DG A
Sbjct: 198 MTSGAEDGDGA 208
|
Length = 342 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-33
Identities = 93/288 (32%), Positives = 127/288 (44%), Gaps = 42/288 (14%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVA 225
+VVVTG+GLVS LG + LL+G SGI + F P I + +
Sbjct: 3 KVVVTGIGLVSALGDLEQS-WQRLLQGKSGIKLHQPF--PELPPLPLGLIGNQPSS---L 56
Query: 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI-- 283
L+K T AL D G+T + CGV+IGS G
Sbjct: 57 EDLTK----------TVVTAALKDAGLT------PPLTDCGVVIGSSRG-----CQGQWE 95
Query: 284 EALRISYKKMNPFCVPFATTN-------MGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+ R Y+ + N + A +G GP + ACAT + I
Sbjct: 96 KLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQ 155
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396
I G+ ++ G +A + P+ L GF AL+ T A P+D R+G V+G
Sbjct: 156 GVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA-----KTGAY-PFDRQREGLVLG 209
Query: 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM 444
EG +L+LE E A+KRGAKIY + G T DAYHM+ P PDGKSA+
Sbjct: 210 EGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAI 257
|
Length = 381 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-32
Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 32/293 (10%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSFPTKIAAEIKSFSTDGW 223
+ + GM P +PD F+ NLLEG ISEI + +D + K+++ G
Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGG 61
Query: 224 --------------VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
++P+ ++ MD LL +AL D G + L S+ GV +
Sbjct: 62 FLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYS---PESLAGSRTGVFV 118
Query: 270 GSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACAT 329
G+ D +E L +++ + + + ++ GP+ ++ TAC++
Sbjct: 119 GAS------SSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSS 172
Query: 330 SNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389
S + A + GE ++ L GG + + P GF LS P RP+D +
Sbjct: 173 SLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPFDAD 227
Query: 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--HMTEPHPDG 440
DG+V GEG GV++L+ L A + G +IYA RG + D +T P +
Sbjct: 228 ADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEA 280
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-31
Identities = 77/271 (28%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+R VVTG+G+V+P G + ++ +L+G SG+ I FD + +P ++A E+ F +
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+L + D+ L A ALAD G+ + D GV+ S GG + ++
Sbjct: 61 PGRLLPQTDRMTRLALAAADWALADAGVDPAALPPYD---MGVVTASAAGGFEFGQRELQ 117
Query: 285 ALRISYKKMNPFCVP------FATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
L + K F N G +++ G GP+ + A + A
Sbjct: 118 KL---WSKGPRHVSAYQSFAWFYAVNTGQ--ISIRHGMRGPSGVVVAEQAGGLDALAQAR 172
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398
+ RG +++ GG D+A+ P G ++ LS ++DP +A P+D G+V GEG
Sbjct: 173 RLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLS-TSDDPARAYLPFDAAAAGYVPGEG 230
Query: 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
+L+LE+ A++RGA++Y E G + T D
Sbjct: 231 GAILVLEDAAAARERGARVYGEIAGYAATFD 261
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 4e-26
Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMN 294
+ A ++A+AD G++ E K+ ++ GG + + +
Sbjct: 11 VSILGFEAAERAIADAGLSR----EYQKNPIVGVVVGTGGG---SPRFQVFGADAMRAVG 63
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P+ V A S +A LG GP Y +S ACA S + AA+ + G+ +++L GGS
Sbjct: 64 PYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGS 123
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRG 414
+ P+ + P KASR +D DGFV G+GAG L++EELEHA RG
Sbjct: 124 EELAAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARG 178
Query: 415 AKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
A IYAE G + T D M P +
Sbjct: 179 AHIYAEIVGTAATIDGAGMGAFAPSAEGL 207
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 23/293 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI--------SEIETFDCTSFPTKIAAEIK 216
VVVTG+G+VS +G F LL G + I AE+
Sbjct: 2 DEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELD 61
Query: 217 SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGM 276
S + + KL +R L A ++A D + +D + G+++G G
Sbjct: 62 SLALPERLDAKLLRRASLSAQAALAAAREAWRDAA-----LGPVDPDRIGLVVG----GS 112
Query: 277 KVFYDAIEALRISYKKMNPFCVP-FATTNMGS---AMLAMDLGWMGPNYSISTACATSNF 332
+ + +Y+ F P + + M + + + G G +++ A A+
Sbjct: 113 NLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASASGQL 172
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRAL-SQRN-NDPTKASRPWDINR 390
++ AA + G + + G+ + + A+ S R ++P A RP+D +R
Sbjct: 173 AVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDR 232
Query: 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
DGF+ GE G ++LE E A++RGA+ YA+ G S DA +P +G+
Sbjct: 233 DGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLEGEMR 285
|
Length = 410 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 35/278 (12%)
Query: 167 VVVTGMGLVSPLGHE-PDVFYNNLLEGVSGISEI--ETFDCTSF-------PTKIAAEIK 216
+ + GM P G + P+ F++ L EG I+E+ + +D ++ P K +
Sbjct: 6 IAIIGMACRFP-GADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWG 64
Query: 217 SFSTD---------GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
F D G ++P+ ++ MD LL +AL D GI D L S GV
Sbjct: 65 GFLDDVDDFDALFFG-ISPREAEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGV 120
Query: 268 LIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
G+ + + + + ++++ + ++ LG GP+ ++ TAC
Sbjct: 121 FAGASVAD--YLLLLLADDEAE----PEYAITGNSSSVAAGRISYVLGLSGPSVTVDTAC 174
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
++S + A + GE ++ L GG + + P F A LS P + +D
Sbjct: 175 SSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFD 229
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS 425
+ DG+V GEGAGV++L+ L A++ G +IYA RG +
Sbjct: 230 ADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSA 267
|
Length = 1061 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 5e-17
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 31/188 (16%)
Query: 266 GVLIG---SGLG----GMKVFYDAIEAL--RISYKKMNPFCVPFATTNMGSAMLAMDLGW 316
GV++G SG+ + A AL Y + + + L LG
Sbjct: 98 GVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSL--------ADFLRAYLGL 149
Query: 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376
GP Y+ISTAC++S +A + G + + GG D ++ + L GF + +LS
Sbjct: 150 SGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVD-SLCRLTLNGFNSLESLS--- 205
Query: 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
P RP+ NRDG +GE A LLE R G +SDA+HM+ P
Sbjct: 206 PQPC---RPFSANRDGINIGEAAAFFLLE-------REDDAAVALLGVGESSDAHHMSAP 255
Query: 437 HPDGKSAM 444
HP+G A+
Sbjct: 256 HPEGLGAI 263
|
Length = 392 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-12
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 317 MGPNYSIS--TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374
+YS++ TAC++S + A + GE ++ L GG + + P G LS
Sbjct: 85 SSSDYSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGMLS- 143
Query: 375 RNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRG 423
P + +D + DG+V GEG GV++L+ L A + G I A RG
Sbjct: 144 ----PDGRCKTFDASADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRG 188
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 42/162 (25%), Positives = 59/162 (36%), Gaps = 45/162 (27%)
Query: 275 GMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM------LAMDLGWM-GPNYSISTAC 327
G + AI +S + V TT LA LG GP YS++ AC
Sbjct: 11 GFEAAEQAIADAGLSKGPIVGVIV--GTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQAC 68
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
AT + A + G+A+++L GGS+
Sbjct: 69 ATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------- 97
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
FV G+GA ++E EHA +RGA AE + T D
Sbjct: 98 -----FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFD 134
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 5e-10
Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 42/247 (17%)
Query: 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK-------- 277
P + + D L L K+ L D G+ + D+ K G+ +G G GG K
Sbjct: 84 PNILELTDISQLLSLVVAKEVLNDAGLPDG----YDRDKIGITLGVG-GGQKQSSSLNAR 138
Query: 278 --------VFYDA----------IEALRISYKKMNPFCVPFATTNMGSAMLA--MDLGWM 317
VF + I+ + Y P + N+ S +A DLG
Sbjct: 139 LQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLG-- 196
Query: 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNN 377
G N + ACA S I A + ++ G + +M+ GG P F A +
Sbjct: 197 GMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT--- 253
Query: 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--E 435
+ +P+DI+ G ++GEG G++ L+ LE A++ G +IYA +G +SD +
Sbjct: 254 --NEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYA 311
Query: 436 PHPDGKS 442
P P+G++
Sbjct: 312 PRPEGQA 318
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 336 NAANHIIRGEANVMLCGGSDAA-----VIPIGLGGFVA---CRALSQRNNDPTKASRPWD 387
A I G+++ L GG+ A ++ LGG + + R +
Sbjct: 184 IAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDG------- 236
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
GF++G G L+LE EHA+ RGA+ YA
Sbjct: 237 ---GGFILGSGGAFLVLESREHAEARGARPYAR 266
|
Length = 398 |
| >gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSD-AAVIPIGL 363
YS+S ACATS + N A I+ G ++ + GG+D ++V+PIG+
Sbjct: 85 YSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGV 128
|
Length = 428 |
| >gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 32/131 (24%)
Query: 227 KLSKRMDK-FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEA 285
+R D+ + A + AL D G+ I+A
Sbjct: 7 PFGRRSDRSPLELAAEAARAALDDAGLE--------------------------PADIDA 40
Query: 286 LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE 345
+ + + G+ + P + A A+ + + AA I G
Sbjct: 41 VVVGN-----AAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGL 95
Query: 346 ANVMLCGGSDA 356
A+V+L G++
Sbjct: 96 ADVVLVVGAEK 106
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. Length = 375 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 308 AMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA-AVIPIGLGGF 366
A L L P Y+++ CA+ ++ AA I GEA+V++ GG ++ + +P +
Sbjct: 64 AALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSVPRS 123
Query: 367 VACRALSQRNNDPTKASRPWDINRDGF---VMGEGA 399
+ N + + D D MG A
Sbjct: 124 RR-WGVKPGNAE-LEDQILKDGLDDPLNGLSMGLTA 157
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.96 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 99.95 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.78 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.62 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.57 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.52 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.51 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.43 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.41 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.41 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.4 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.4 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.38 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.37 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.36 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.36 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.35 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.35 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.33 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.33 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.32 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.32 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.29 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.29 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.29 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.28 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.28 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.27 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.26 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.26 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.25 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.25 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.25 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.24 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.23 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.23 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.22 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.22 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.22 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.2 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.19 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.18 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.18 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.18 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 99.13 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.13 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.11 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.09 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.09 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 99.08 | |
| PRK06158 | 384 | thiolase; Provisional | 99.08 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 99.07 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.06 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 99.05 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.05 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.05 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.03 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.01 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 98.99 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 98.95 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 98.94 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 98.93 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 98.91 | |
| PRK06840 | 339 | hypothetical protein; Validated | 98.9 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 98.9 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 98.87 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 98.86 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 98.83 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.81 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 98.8 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 98.77 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 98.76 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 98.75 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 98.74 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 98.73 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 98.7 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 98.69 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 98.68 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 98.65 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 98.62 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 98.6 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 98.56 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 98.48 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 98.45 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 98.43 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 98.43 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 98.38 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 98.34 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 98.2 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 98.19 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 98.17 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 98.04 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 98.03 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 97.99 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 97.96 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 97.9 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 97.86 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 97.81 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 97.76 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 97.34 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 97.01 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 96.97 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 95.76 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 95.74 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 95.69 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 95.03 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 88.59 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 87.17 |
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-74 Score=612.17 Aligned_cols=428 Identities=75% Similarity=1.199 Sum_probs=345.8
Q ss_pred CCcCcccchhhHHHHhhhccccCCCCCCCCCcchhhhcccccccchhHHHHHHhhhhccCCCccccCcccccCCCCchHH
Q 012130 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGSSHSI 81 (470)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 81 (470)
|+++++++|||||||||||++++.++..+..... +..++ .+||+.+.++.. . .++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~--------~------~~~~~ 57 (540)
T PLN02787 1 MASASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGR-SRRRRKRRKCSS--------A------SGSAS 57 (540)
T ss_pred CcccccchhHHHHHHHHHhhhhhccCCCcccccc--------ccccc-cchhhhhhhhcc--------c------cccch
Confidence 6889999999999999999999998777332221 11222 111221111111 0 12333
Q ss_pred HHHHHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHHHHHhhhhhhhhccccccccccCCCCccccccCCCC
Q 012130 82 QSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPH 161 (470)
Q Consensus 82 ~~l~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (470)
..... .+..|+|+.+....|-. ...+|+.+|.+ +.+++++ ..+....++..++..+|......++.+.
T Consensus 58 ~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (540)
T PLN02787 58 ILVTS-CLAFGPCTHYNSSGGNA-------LSSLFGSNSVS--LNRNQRR--RNRAARSGKAMAVAVQPEKEVETKKKPL 125 (540)
T ss_pred hhccc-hhcccchhhcccccccc-------ccccccCCCcc--ccccccc--ccccCCCcccceeccCcccccccccCCC
Confidence 33322 23338888887663321 13357765554 4434444 4444444555555555554444443444
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~ 241 (470)
+++++|||||||+++|+|.++++||++|.+|+++|+++++|+...++.++++++++|+++.|+++++.++||+++++++.
T Consensus 126 ~~~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~ 205 (540)
T PLN02787 126 TKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLT 205 (540)
T ss_pred CCCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCCcce
Q 012130 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (470)
Q Consensus 242 aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (470)
++++||+|||++++.++.+++.|+|||+|+..+++..+.+.++.+...+.+++|+.++..+.|+.+++|++.|||+||++
T Consensus 206 Aa~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~Gp~~ 285 (540)
T PLN02787 206 AGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 285 (540)
T ss_pred HHHHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCCCCcc
Confidence 99999999999764333567789999999999998888887777766667789998998999999999999999999999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
+|++||+||++||++|+++|++|+||+|||||+|..++|..+.+|..+++|++.+++|++.|||||+++|||++|||+++
T Consensus 286 tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GEGAa~ 365 (540)
T PLN02787 286 SISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGV 365 (540)
T ss_pred ccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccccceEE
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeeeccee
Q 012130 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 402 lvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGtGT~l 464 (470)
+|||++++|++||++|||+|+|+++++|++|++.|+|+|+++.. .+++ -+|+|||+|||||.+
T Consensus 366 lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~AGl~p~dIdyInaHGTGT~~ 437 (540)
T PLN02787 366 LLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKA 437 (540)
T ss_pred EEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHHHCcEEEccCccCCC
Confidence 99999999999999999999999999999999999999886653 2222 199999999999975
|
|
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=502.09 Aligned_cols=301 Identities=48% Similarity=0.773 Sum_probs=287.9
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
++||||||||+++|+|++++++|++|.+|+++|+.++.++.+.+|..+++.|+.|+...|+++...++|++..+|++.++
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
+|||+|+|+.+..+++.+..++||.||+.++++..+.+..+.+.+ ++++++||.+|..+.||.++.||+.+||+||+++
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~Gpnhs 182 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNHS 182 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCcCCchh
Confidence 999999999877667788899999999999999998887777765 5999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+|||++|..+|..|++.|+.|++|++|+||+|..++|..+.+|++++.||++|++|..+|||||.+|||||+|||+|++
T Consensus 183 vSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGEGagvl 262 (440)
T KOG1394|consen 183 VSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGEGAGVL 262 (440)
T ss_pred hHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeeccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-c--------cccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-F--------SVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-~--------~i~~veahGtGT~l 464 (470)
|||++|||++||++|||||.||++++|++|||.|+|+|.++...+.. + +|+||.+|.|.|.+
T Consensus 263 vlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i~YvNAHATST~~ 333 (440)
T KOG1394|consen 263 VLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPEDIDYVNAHATSTPL 333 (440)
T ss_pred ehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHcCCChhhcCeeecccccCcC
Confidence 99999999999999999999999999999999999999998854332 1 99999999999986
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=555.44 Aligned_cols=285 Identities=26% Similarity=0.446 Sum_probs=260.6
Q ss_pred cEEEEeecccCCCCCCHHHHHHHHHcCCCcceeC--CCCCCCCCC-----------cccccc---ccCCCCCCC-CCccc
Q 012130 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSFP-----------TKIAAE---IKSFSTDGW-VAPKL 228 (470)
Q Consensus 166 ~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~--~~~~~~~~~-----------~~~~g~---i~~fd~~~f-i~p~e 228 (470)
.|+|+||+|+||+++++++||++|.+|+++|+++ +|||++.++ .++++. ++.||+.|| |+|+|
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPrE 84 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPRE 84 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHHH
Confidence 3999999999999999999999999999999999 478777663 345554 557999999 99999
Q ss_pred cccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHH
Q 012130 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (470)
Q Consensus 229 a~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~ 308 (470)
+..|||||||+|+++|+|||||||.++ .+.++++|||+|.+..+|....... . ...+++...++..+++++
T Consensus 85 A~~mDPQqRllLe~aw~AlEdAG~~~~---~l~g~~tgV~~g~~~~~y~~~~~~~-----~-~~~~~~~~~g~~~~~~a~ 155 (1061)
T COG3321 85 AEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGVFAGASVADYLLLLLAD-----D-EAEPEYAITGNSSSVAAG 155 (1061)
T ss_pred HHhcCchHhHHHHHHHHHHHHcCCCcc---ccCCcceEEEEeeccCccccccccc-----c-ccccceecccchhhHHHH
Confidence 999999999999999999999999987 7788999999999998886543211 0 134667778888899999
Q ss_pred HHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCC
Q 012130 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (470)
Q Consensus 309 ~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~ 388 (470)
||||+|||+||+++|||+|||||+|||+||++|++||||++|+|||++.++|.....|++.++|| |+|+||+||+
T Consensus 156 Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls-----~~g~c~~fd~ 230 (1061)
T COG3321 156 RISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFDA 230 (1061)
T ss_pred HHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC-----CCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCC--CCCCcCcCchhHHHHHhhc-------cccEEEEee
Q 012130 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--HMTEPHPDGKSAMSLRLNF-------SVQMKSLNG 459 (470)
Q Consensus 389 ~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~--~~t~P~p~g~~~~~~~~~~-------~i~~veahG 459 (470)
++|||++|||+|++|||++++|+++||+||++|+|+++|+||. ++|+|++.+|..++..++. +|+|||+||
T Consensus 231 ~adG~v~geG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ~~v~~~al~~a~i~p~tv~yvEaHg 310 (1061)
T COG3321 231 DADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYVEAHG 310 (1061)
T ss_pred CCCCEEEeeeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHHHHHHHHHHHhcCCCcccCcEEEecC
Confidence 9999999999999999999999999999999999999999994 8999999999999877763 999999999
Q ss_pred eccee
Q 012130 460 FGKFY 464 (470)
Q Consensus 460 tGT~l 464 (470)
|||.|
T Consensus 311 TGT~l 315 (1061)
T COG3321 311 TGTPL 315 (1061)
T ss_pred CCCCC
Confidence 99987
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=487.86 Aligned_cols=298 Identities=44% Similarity=0.716 Sum_probs=275.5
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
.++|||||||+++|.|.++++||++|.+|+++|+++++|+...++..+++.+++||+.+|+++++.+.||+++++++.++
T Consensus 3 ~~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~ 82 (414)
T PRK08722 3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAG 82 (414)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||++++ ..+..|+|||+|++.+++...++.+..+.+ +...++|+.++..+.|.++++|+++||++||+++
T Consensus 83 ~~Al~dAGl~~~---~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~Gp~~t 159 (414)
T PRK08722 83 IQALDDSGLEVT---EENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIA 159 (414)
T ss_pred HHHHHHcCCCcc---ccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCCCccc
Confidence 999999999764 556789999999999999887777766554 4566889999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+||+.||++|+++|++|+||+|||||+|..++|..+.+|..+++|+..+++|++.|||||.+++||++|||++++
T Consensus 160 i~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGaaal 239 (414)
T PRK08722 160 ISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGMM 239 (414)
T ss_pred cccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceEEEE
Confidence 99999999999999999999999999999999999999999999999999977777999999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGtGT~l 464 (470)
|||++++|+++|++||++|+|+++++|++|++.|+|++++... .++. -+|+|||+|||||.+
T Consensus 240 vLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~ 310 (414)
T PRK08722 240 VLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPA 310 (414)
T ss_pred EEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHcCCCHHHcCEEEccCccCCC
Confidence 9999999999999999999999999999999999998875442 2222 199999999999975
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-59 Score=558.79 Aligned_cols=293 Identities=24% Similarity=0.396 Sum_probs=258.8
Q ss_pred CCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeC--CCCCCCCC-----------Ccccccccc--CCCCCCC-CCc
Q 012130 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSF-----------PTKIAAEIK--SFSTDGW-VAP 226 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~--~~~~~~~~-----------~~~~~g~i~--~fd~~~f-i~p 226 (470)
++++||||||||++|+|.++++||++|.+|+++|+++ +||+.+.| +.+++|+++ +||+.+| |+|
T Consensus 5 ~~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~FD~~~F~i~p 84 (2582)
T TIGR02813 5 KDMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPP 84 (2582)
T ss_pred CCCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccCCCHhhcCCCH
Confidence 3578999999999999999999999999999999999 47876554 456677776 5999999 999
Q ss_pred cccccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHH---------------------HHHHH
Q 012130 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY---------------------DAIEA 285 (470)
Q Consensus 227 ~ea~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~---------------------~~~~~ 285 (470)
++++.|||+||++|+++|+||+||||.. .++++|||||+|++.+++.... +..+.
T Consensus 85 ~ea~~mDpqqrl~L~~a~eALedAG~~~----~~~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (2582)
T TIGR02813 85 NILELTDISQLLSLVVAKEVLNDAGLPD----GYDRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEM 160 (2582)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhCCCCC----CCCCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhhHHH
Confidence 9999999999999999999999999974 4678899999999876542110 00111
Q ss_pred H----HhhhhcCCCccccccchhhHHHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchh
Q 012130 286 L----RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (470)
Q Consensus 286 ~----~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~ 361 (470)
+ ...+...++..+++.+.|++++|||++|||+||+++|++|||||++|||+||++|++|+||+|||||+|..++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~ 240 (2582)
T TIGR02813 161 LIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPF 240 (2582)
T ss_pred hhhhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHH
Confidence 1 112234566778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCC--CCCCcCcC
Q 012130 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--HMTEPHPD 439 (470)
Q Consensus 362 ~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~--~~t~P~p~ 439 (470)
.+..|+++++|| +++.|||||.++|||++|||+|+|||||+++|++|||+|||+|+|+++|+||+ ++|+|+++
T Consensus 241 ~~~~fs~~~~lS-----~~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP~~~ 315 (2582)
T TIGR02813 241 MYMSFSKTPAFT-----TNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPE 315 (2582)
T ss_pred HHHHHHhccCcC-----CCCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCCCHH
Confidence 999999999999 88999999999999999999999999999999999999999999999999997 89999999
Q ss_pred chhHHHHHhhc-------cccEEEEeeeccee
Q 012130 440 GKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 440 g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
||..++.+++. +|+|||+|||||.+
T Consensus 316 gq~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~ 347 (2582)
T TIGR02813 316 GQAKALKRAYDDAGFAPHTCGLIEAHGTGTAA 347 (2582)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEecCCCCCC
Confidence 99877766652 89999999999976
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-57 Score=472.99 Aligned_cols=299 Identities=42% Similarity=0.692 Sum_probs=271.2
Q ss_pred CCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccC--------CCCCCCCCccccccCCH
Q 012130 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS--------FSTDGWVAPKLSKRMDK 234 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~--------fd~~~fi~p~ea~~mdp 234 (470)
.+++|+|||||+++|.|.++++||++|++|+++++++++|+...++..+++.+++ ||+++|+++++.+.|||
T Consensus 2 ~~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~fd~~~~i~~~~~~~~d~ 81 (424)
T PRK06333 2 NKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDR 81 (424)
T ss_pred CCCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCCCceEEEeccccccccccCChhHcCCHHHHhhcCH
Confidence 4689999999999999999999999999999999999998888888888898887 88888899999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccc-CCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHH
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNEL-DKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~-~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
++++++.++++||+|+|++++ .. +..++|||+|++.+++....+.+..+.. +...++|+.++..+.|..+++|++
T Consensus 82 ~~~l~~~aa~~Al~dAgl~~~---~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~ 158 (424)
T PRK06333 82 FILFAMAAAKEALAQAGWDPD---TLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSI 158 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCcc---ccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHH
Confidence 999999999999999999865 44 6689999999999988877776665543 445677888888899999999999
Q ss_pred HhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCC
Q 012130 313 DLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRD 391 (470)
Q Consensus 313 ~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~ad 391 (470)
+|||+||+++|+++|+||+.||++|+++|++|+||+|||||+|.++++..+.+|..++.|+.. +.+|++.|||||.++|
T Consensus 159 ~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~~~ 238 (424)
T PRK06333 159 RYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRD 238 (424)
T ss_pred HhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999865 5678899999999999
Q ss_pred cceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeeecc
Q 012130 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGFGK 462 (470)
Q Consensus 392 G~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGtGT 462 (470)
||++|||+++||||++++|++||++||++|+|++.++|++|++.|+|+++++.. .+++ -+|+|||+|||||
T Consensus 239 G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agi~p~dId~i~~hgtgt 318 (424)
T PRK06333 239 GFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPEEVQHLNAHATST 318 (424)
T ss_pred CeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEeccCCCC
Confidence 999999999999999999999999999999999999999999999888775543 2222 1899999999999
Q ss_pred ee
Q 012130 463 FY 464 (470)
Q Consensus 463 ~l 464 (470)
.+
T Consensus 319 ~~ 320 (424)
T PRK06333 319 PV 320 (424)
T ss_pred cc
Confidence 85
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-57 Score=468.54 Aligned_cols=294 Identities=26% Similarity=0.418 Sum_probs=266.2
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
++|||||||+++|+|.++++||++|.+|+++|+++++|+...++..+.+++++||+++++++++.++|||++++++.+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 80 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAAD 80 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988898899999999999888999999999999999999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV 323 (470)
+||+|||++++ .+++.|+|||+|++.+++......+..+.. +....+++.++..+.+..+++|++.||++||+++|
T Consensus 81 eAl~dAGl~~~---~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~ti 157 (399)
T cd00832 81 WALADAGVDPA---ALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVV 157 (399)
T ss_pred HHHHHcCCCcc---ccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999875 567889999999999998877666665543 45567788888888899999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+++|+||+.||++|+++|++|+ |++||||+|..++|..+..|..++.|+. ..+|++.|||||+++|||++|||+++||
T Consensus 158 ~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~-~~~p~~~~rPFd~~~~G~~~gEGa~~lv 235 (399)
T cd00832 158 VAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST-SDDPARAYLPFDAAAAGYVPGEGGAILV 235 (399)
T ss_pred cchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC-CCCCCCCcCCCcCCCCCEeeeceEEEEE
Confidence 9999999999999999999999 9999999999999999999999999985 3457889999999999999999999999
Q ss_pred eccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 404 Le~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
||++++|++||++||++|+|+++++|+++.+. .+.++...+.++. .+|+||++|||||.+
T Consensus 236 Le~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~-~~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~ 302 (399)
T cd00832 236 LEDAAAARERGARVYGEIAGYAATFDPPPGSG-RPPGLARAIRLALADAGLTPEDVDVVFADAAGVPE 302 (399)
T ss_pred EeeHHHHHHCCCeEEEEEEeEEEcCCCCCCCC-CHHHHHHHHHHHHHHcCCCHHHccEEEeccCcCCC
Confidence 99999999999999999999999999998753 4555555544443 299999999999986
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=468.36 Aligned_cols=296 Identities=35% Similarity=0.527 Sum_probs=265.7
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|++|||||||+++|.|.++++||++|++|+++|+++++|+...++.++.+++ +||+..+++++..++||+..++++.++
T Consensus 1 m~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~r~~~~a~~aa 79 (406)
T PRK07967 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNV-KLDPTGLIDRKVMRFMGDASAYAYLAM 79 (406)
T ss_pred CCcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCcccccCCCCceEEEc-CCChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999888999999987 488877788888899999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh--hhhcCCCccccccchhhHHHHHHHHhCCCCcce
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (470)
.+||+|||+.++ .....++|||+|++.+++....+.+..+.. +.+.++|+.++..+.|.++++|+++||++||++
T Consensus 80 ~~Al~dAGl~~~---~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~Gp~~ 156 (406)
T PRK07967 80 EQAIADAGLSEE---QVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNY 156 (406)
T ss_pred HHHHHHcCCCCc---cCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCCCcc
Confidence 999999999765 567789999999998887665555544432 445678999999999999999999999999999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCCcceecceeE
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
+|+++|+||+.||++|+++|++|+||+|||||+|. +++.....|..++.|+.. +.+|++.|||||+++|||++|||++
T Consensus 157 tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGaa 235 (406)
T PRK07967 157 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGG 235 (406)
T ss_pred ccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceEE
Confidence 99999999999999999999999999999999997 566667789999999865 5678999999999999999999999
Q ss_pred eEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh----ccccEEEEeeeccee
Q 012130 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN----FSVQMKSLNGFGKFY 464 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~----~~i~~veahGtGT~l 464 (470)
++|||++++|++||++||++|+|+++++||+|++.|+..++...+.++. .+|+|||+|||||.+
T Consensus 236 ~lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~p~~~~~~~a~~~Al~~~~~~Idyi~aHgtGT~~ 303 (406)
T PRK07967 236 VVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGAVRCMQMALATVDTPIDYINTHGTSTPV 303 (406)
T ss_pred EEEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHhCCCCCccEEEcCCCCCCC
Confidence 9999999999999999999999999999999999998777766655543 289999999999975
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-57 Score=468.32 Aligned_cols=298 Identities=41% Similarity=0.674 Sum_probs=276.0
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|++|+|||||+++|.|.++++||++|++|+++|+++++|+...++..+++.+++||+..|+++++.++||++++++++++
T Consensus 1 m~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999889999999999999998899999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||++++ .++..++||++|+..+++...++.+..+. .+.+.++|+.++..+.|+++++|++.||++||+++
T Consensus 81 ~~AL~dAGl~~~---~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~~ 157 (406)
T PRK08439 81 REAMKDAGFLPE---ELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLS 157 (406)
T ss_pred HHHHHHcCCCcc---cCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCCCCccc
Confidence 999999999875 66788999999999888877666554443 35566889899999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
++++|+|+++||++|+++|++|++|++||||+|..++|..+.+|..+++|+..+.+|+..|||||.+++||++|||++++
T Consensus 158 ~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa~~l 237 (406)
T PRK08439 158 SVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGAL 237 (406)
T ss_pred cccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCceEEE
Confidence 99999999999999999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-----ccccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-----FSVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-----~~i~~veahGtGT~l 464 (470)
|||++++|++||++||++|+|++.++|++|++.|+|+++...+..+. .+|+|||+|||||.+
T Consensus 238 vLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~~~~~~a~~~al~~ag~~~i~~v~~hgtgt~~ 304 (406)
T PRK08439 238 VLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPEGPLRAMKAALEMAGNPKIDYINAHGTSTPY 304 (406)
T ss_pred EEccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCHHHHHHHHHHHHHHcCCCccCEEEccCCcCCC
Confidence 99999999999999999999999999999999999988877655544 389999999999976
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=462.51 Aligned_cols=294 Identities=30% Similarity=0.501 Sum_probs=261.7
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCC--CCCCCcccccccc-CCCCCCCCCccccccCCHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIK-SFSTDGWVAPKLSKRMDKFMLYLL 240 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~--~~~~~~~~~g~i~-~fd~~~fi~p~ea~~mdp~~rl~L 240 (470)
+++|||||||+++|+|.++++||++|.+|+++|++++.|. ...++.++++.+. +|| .+++++++++|||++++++
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d--~~~~~~~~~~~d~~~~~~l 88 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFD--HQLTRVELRRMSYLQRMST 88 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCcc--ccCCHHHHhhccHHHHHHH
Confidence 5899999999999999999999999999999999997653 3346777777774 455 3478999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCc
Q 012130 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (470)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gp 319 (470)
.++++||+|||+. ..++.|+||++|++.+++....+.+..+.. +++.++|+.++..+.|..+.++++.||++||
T Consensus 89 ~aa~~AledAg~~-----~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G~ 163 (418)
T PRK07910 89 VLGRRVWENAGSP-----EVDTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAG 163 (418)
T ss_pred HHHHHHHHHcCCC-----CCCcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCCC
Confidence 9999999999985 356789999999999998877776666543 4556778888888999999999999999999
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhccc-ccCCCCCCCCCCcCCCCCCCcceecce
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRA-LSQRNNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~-Ls~~~~~~~~~~rpFd~~adG~v~GEG 398 (470)
+++|+++|+|+++||++|+++|++|+||+|||||+|..++|..+.+|.++++ |+..+++|++.|||||.++|||++|||
T Consensus 164 ~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG 243 (418)
T PRK07910 164 VITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243 (418)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence 9999999999999999999999999999999999999999999999999999 887677789999999999999999999
Q ss_pred eEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeeeccee
Q 012130 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 399 agalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGtGT~l 464 (470)
++++|||++++|+++|++||++|+|+++++||+|++.|+|.++++.. .++. .+|+|||+|||||.+
T Consensus 244 aa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~ 318 (418)
T PRK07910 244 GALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATGTSV 318 (418)
T ss_pred EEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCC
Confidence 99999999999999999999999999999999999999998875442 2222 199999999999975
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=462.68 Aligned_cols=297 Identities=31% Similarity=0.405 Sum_probs=267.1
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCC-CCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~-~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
++|||||||+++|.|.++++||++|.+|+++|+++++|+. ..++.++++.+++||...++++++.++||+++++.+.++
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~aa 81 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRAS 81 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999875 567889999999999888888999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||+... ...++.|+||++|++.++.....++...+.. ....++++.++..++|.++++|++.||++||+++
T Consensus 82 ~~Al~dAGl~~~--~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~Gp~~t 159 (405)
T PRK09116 82 ELALEDAGLLGD--PILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIP 159 (405)
T ss_pred HHHHHHcCCCCc--cccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCCCccc
Confidence 999999999532 1346679999999999888777776665543 3345777777888889999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+||++||+.|+++|++|+||+|||||+|. ++|.....|..++.++..+..|+..|||||+++|||++|||++++
T Consensus 160 i~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gEGa~~~ 238 (405)
T PRK09116 160 TSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGEGAGTL 238 (405)
T ss_pred ccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeeccEEEE
Confidence 9999999999999999999999999999999998 788888899999988866667889999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
|||++++|++||++|||+|+|+++++|++|++.|++.++...+.+++. +|+|||+|||||.+
T Consensus 239 vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p~~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~ 307 (405)
T PRK09116 239 VLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAETMQIAMELALKDAGLAPEDIGYVNAHGTATDR 307 (405)
T ss_pred EEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCCCHHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCC
Confidence 999999999999999999999999999999999998888766555442 89999999999975
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=456.77 Aligned_cols=296 Identities=45% Similarity=0.725 Sum_probs=270.4
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
+++|+|||||+++|.|++.+++|++|..|+++|..+++|+...++.++.+++++| +.++.+++.++||+.++|.+.++
T Consensus 2 ~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~d~~~~~a~~Aa 79 (412)
T COG0304 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQIAKKERRFMDRFSQLAVVAA 79 (412)
T ss_pred CceEEEecceeeecccCCHHHHHHHHhcCCCCCCccccccccCCCCccccccccc--ccccchHHhhcccHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999988 45567888889999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhc-CCCccccccchhhHHHHHHHHhCCCCcce
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKK-MNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~-~~p~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (470)
.+||+|||+..+ ..... |+||++|++.+++...+.....+. .+.++ ++|+.++..+.|+.++.++++||++||++
T Consensus 80 ~eAl~dAgl~~~--~~~~~-r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~g~~G~~~ 156 (412)
T COG0304 80 VEALEDAGLDNE--LNVDM-RVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNY 156 (412)
T ss_pred HHHHHHcCCCcc--cccCc-cEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHhCCCCCcC
Confidence 999999999832 12333 999999999999998765333333 44444 89999999999999999999999999999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
++.+||+||..||..|++.|+.|++|+|||||+|..+++..+.+|..+++||+.|++|...|||||++|||||+|||+|+
T Consensus 157 ~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~RdGfv~gEGag~ 236 (412)
T COG0304 157 TPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGA 236 (412)
T ss_pred ChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCCCCCEEEecceeE
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred EeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHh-hc--------cccEEEEeeeccee
Q 012130 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRL-NF--------SVQMKSLNGFGKFY 464 (470)
Q Consensus 402 lvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~-~~--------~i~~veahGtGT~l 464 (470)
+|||++++|++||++|||+|.|++.++|++|+|.|+|+|.+....++ ++ +|+||.+|||||.+
T Consensus 237 lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~ 308 (412)
T COG0304 237 LVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPA 308 (412)
T ss_pred EEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHcCCCHhHCCEEeCCCccCCC
Confidence 99999999999999999999999999999999999998887764332 22 99999999999976
|
|
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=457.38 Aligned_cols=298 Identities=47% Similarity=0.775 Sum_probs=273.1
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|++|+|||||+++|+|.++++||++|++|+++++++++|+...++..+++.+++||++.|+++++.++|||+++|+++++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999998889889999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||++++ +++..++|||+|++.+++....+.+..+.. +...++|+.++....+..+++|+++||++||+++
T Consensus 81 ~~Al~dAGl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (411)
T PRK07314 81 KQAVEDAGLEIT---EENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHS 157 (411)
T ss_pred HHHHHHcCCCcc---cCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCCCcccc
Confidence 999999999876 678889999999999988888777776654 3455677888888889999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+||+.||+.|+++|++|+||++||||+|..++|..+.+|..++.|+.++.+|+..|+|||.++||+++|||++++
T Consensus 158 v~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGAaav 237 (411)
T PRK07314 158 IVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGAGIL 237 (411)
T ss_pred chhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceEEEE
Confidence 99999999999999999999999999999999999999999999999999876666889999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
|||++++|+++|++||++|+|++.++|+++++.|++.+++.. +.+++ .+|+|||+|||||.+
T Consensus 238 vL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~agi~~~dId~v~~hgtgt~~ 308 (411)
T PRK07314 238 VLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPA 308 (411)
T ss_pred EEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEEccccCCcc
Confidence 999999999999999999999999999999999998875443 23222 299999999999976
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=442.48 Aligned_cols=297 Identities=46% Similarity=0.796 Sum_probs=271.3
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
++|+|||||+++|.|.++++||++|.+|+++++++++|+...++..+++++++||+++|+++++.++|||++++++++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAK 80 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV 323 (470)
+||+|||+.++ +++..++|||+|+..+++...++++..+.+ +...++|+.++..+.|.++++|++.||++||+++|
T Consensus 81 ~Al~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~g~~~~v 157 (407)
T TIGR03150 81 EAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAV 157 (407)
T ss_pred HHHHhcCCCcc---cCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCCCCccccc
Confidence 99999999876 677889999999999888877776665553 44567888888889999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+++|+||+.||++|+++|++|+||++||||+|.+++|..+..|...+.++..+..+...|+|||.+++|+++|||++++|
T Consensus 158 ~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~g~~~gEGAaalv 237 (407)
T TIGR03150 158 VTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237 (407)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCCcEEEeceEEEEE
Confidence 99999999999999999999999999999999999999999999999999767778889999999999999999999999
Q ss_pred eccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhH--HHHHhh-------ccccEEEEeeeccee
Q 012130 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA--MSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 404 Le~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~--~~~~~~-------~~i~~veahGtGT~l 464 (470)
||++++|+++|++||++|+|++.++|+++++.|++.+.++ .+.+++ -+|+|||+|||||.+
T Consensus 238 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~ 307 (407)
T TIGR03150 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPL 307 (407)
T ss_pred EeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCC
Confidence 9999999999999999999999999999999998776433 333332 199999999999965
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=447.47 Aligned_cols=298 Identities=39% Similarity=0.669 Sum_probs=258.0
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCC--------------CCCCcccccccc------CCCCC
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--------------TSFPTKIAAEIK------SFSTD 221 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~--------------~~~~~~~~g~i~------~fd~~ 221 (470)
.+.++|||||||+++|+|.++++||++|.+|+++|++++++++ ..++.++++.++ +||+.
T Consensus 3 ~~~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~ 82 (437)
T PLN02836 3 LPTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEE 82 (437)
T ss_pred CCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChH
Confidence 3457999999999999999999999999999999999976543 234566666664 57877
Q ss_pred CCCCccccccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccc
Q 012130 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPF 300 (470)
Q Consensus 222 ~fi~p~ea~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~ 300 (470)
+|.. .++||+..+++++++++||+|||+.+.. ....+++|||+|++.+++..+.+.+..+.+ ..+.++|+.++.
T Consensus 83 ~~~~---~~~~~~~~~~~~~aa~~Al~dAg~~~~~--~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~ 157 (437)
T PLN02836 83 LWLN---SRSSSRFIGYALCAADEALSDARWLPSE--DEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPR 157 (437)
T ss_pred Hhcc---ccccCHHHHHHHHHHHHHHHHcCCCccc--ccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhh
Confidence 7633 4579999999999999999999997531 245679999999998888777666554443 345678898999
Q ss_pred cchhhHHHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCC
Q 012130 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDP 379 (470)
Q Consensus 301 ~~~~~~a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~ 379 (470)
.+.|+++++|+++||++||+++|+++|+||+.||++|+++|++|+||++||||+|..++|..+.+|.+++.++.. +.+|
T Consensus 158 ~~~n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p 237 (437)
T PLN02836 158 ILINMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCP 237 (437)
T ss_pred hcccHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCc
Confidence 999999999999999999999999999999999999999999999999999999998999999999999998854 4557
Q ss_pred CCCCcCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------c
Q 012130 380 TKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------F 450 (470)
Q Consensus 380 ~~~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~ 450 (470)
+..|||||.++|||++|||++++|||++++|+++|++||++|+|+++++|++|++.|++++++... .+++ -
T Consensus 238 ~~~~~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~Agi~~~ 317 (437)
T PLN02836 238 TEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPN 317 (437)
T ss_pred ccccCCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHcCCCHh
Confidence 889999999999999999999999999999999999999999999999999999999998876542 2222 1
Q ss_pred cccEEEEeeeccee
Q 012130 451 SVQMKSLNGFGKFY 464 (470)
Q Consensus 451 ~i~~veahGtGT~l 464 (470)
+|+|||+|||||.+
T Consensus 318 dId~ve~hgtgt~~ 331 (437)
T PLN02836 318 QVDYVNAHATSTPL 331 (437)
T ss_pred HcCEEEccCCcCcC
Confidence 89999999999964
|
|
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-53 Score=440.39 Aligned_cols=296 Identities=23% Similarity=0.317 Sum_probs=260.0
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCC--------CCCccccccccCCCCCCCCCccccccCCHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT--------SFPTKIAAEIKSFSTDGWVAPKLSKRMDKF 235 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~--------~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~ 235 (470)
|++|||||||+++|.|.++++||++|.+|+++|+++++|+.. ..+..+++++++|+...+++++..++|++.
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELDSLALPERLDAKLLRRASLS 80 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccccccccCCCceEEEEeCCCChhhcCCHHHhhcCCHH
Confidence 479999999999999999999999999999999999887653 334567888998988777888889999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
+++++.++++||+|||+. ..+..|+|||+|++.+........+..+.+......|+.....+.+.++++|++.||
T Consensus 81 ~~lal~Aa~eAl~dAgl~-----~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 155 (410)
T PRK07103 81 AQAALAAAREAWRDAALG-----PVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFG 155 (410)
T ss_pred HHHHHHHHHHHHHhcCcC-----CCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhC
Confidence 999999999999999995 346789999999887766655555554444444456666666677889999999999
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC--CCCCCCCCcCCCCCCCcc
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR--NNDPTKASRPWDINRDGF 393 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~--~~~~~~~~rpFd~~adG~ 393 (470)
++||+++|+++|+|++.||++|+++|++|+||+|||||++..+++..+.+|..++.|+.. +.+|+..|||||.++||+
T Consensus 156 l~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG~ 235 (410)
T PRK07103 156 IRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDGF 235 (410)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCCe
Confidence 999999999999999999999999999999999999999988999999999999998754 456889999999999999
Q ss_pred eecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 394 v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
++|||++++|||++++|+++|++||++|+|+++++|+++++.|++.++...+.+++. +|+|||+|||||.+
T Consensus 236 v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~a~~~Al~~Agi~~~dId~v~~hgtgt~~ 313 (410)
T PRK07103 236 IYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPL 313 (410)
T ss_pred eEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCCC
Confidence 999999999999999999999999999999999999999999988887666554442 89999999999975
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=423.91 Aligned_cols=297 Identities=47% Similarity=0.800 Sum_probs=271.1
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
++|+|||||+++|+|.+.++||++|++|+++++++++|+...++..+++.+++|++.+++++++.+.|||+++|++++++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAE 80 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999998888888899999999998866999999999999999999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV 323 (470)
+||+|||++++ +++..++|||+|++.+++...++++..+.. ++..++|+.++....+..+++|+++||++||+++|
T Consensus 81 ~AL~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v 157 (406)
T cd00834 81 EALADAGLDPE---ELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTV 157 (406)
T ss_pred HHHHHcCCCcc---cCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhCCCCccccc
Confidence 99999999876 677899999999999999888887776654 44567888888888899999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+++|+|+++||+.|+++|++|+||.+||||+|...+|..+..|..+++|+..+.+|++.|+|||.+++|+++|||++++|
T Consensus 158 ~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~~g~~~geGA~a~v 237 (406)
T cd00834 158 STACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCCCCEeeeccEEEEE
Confidence 99999999999999999999999999999999988899999999999999766567889999999999999999999999
Q ss_pred eccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 404 Le~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
||+.++|+++|++||++|+|++.++|+++++.|++++.++. +.++. -+|+|||+|||||.+
T Consensus 238 L~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~agi~~~dId~v~~h~tgt~~ 307 (406)
T cd00834 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYINAHGTSTPL 307 (406)
T ss_pred EecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEecccccCcc
Confidence 99999999999999999999999999999999987665544 22222 299999999999975
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=423.23 Aligned_cols=288 Identities=34% Similarity=0.490 Sum_probs=255.3
Q ss_pred CcEEEEeecccCCCCCC---HHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccC---CHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHE---PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRM---DKFMLY 238 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~---~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~m---dp~~rl 238 (470)
.+|+|||||+++|.|.+ +++||++|.+|+++++++++|+ ..++..+++.+++|+ +++++.+++ ||++++
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~-~~~~~~~~g~i~~~~----~~~~~~~~~~~~~~~~~l 75 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGD----IPGWDAKRTGIVDRTTLL 75 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc-ccCCccEEEEccCCC----cCHHHHHhccCCCHHHHH
Confidence 37999999999999999 9999999999999999999887 667788889998877 567778887 999999
Q ss_pred HHHHHHHHHHhCCCCcccccc-cCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccch--hhHHHHHHHHhC
Q 012130 239 LLTAGKKALADGGITEDVMNE-LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT--NMGSAMLAMDLG 315 (470)
Q Consensus 239 ~L~aa~eALedAG~~~~~~~~-~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~a~~is~~~g 315 (470)
+++++++||+|||+.++ + ++..++|||+|++.+++......+..+. +..+|+.++..+. ++++++|++.||
T Consensus 76 ~~~aa~~Al~dAGl~~~---~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~is~~~g 149 (407)
T cd00828 76 ALVATEEALADAGITDP---YEVHPSEVGVVVGSGMGGLRFLRRGGKLDA---RAVNPYVSPKWMLSPNTVAGWVNILLL 149 (407)
T ss_pred HHHHHHHHHHhCCCCcc---ccCCccCeEEEEeeccCCHHHHHHHHHHHh---hccCCcccchhccccchHHHHHHHHhC
Confidence 99999999999999865 5 6778999999999998877666554433 3457788888887 999999999999
Q ss_pred C-CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcce
Q 012130 316 W-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (470)
Q Consensus 316 l-~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v 394 (470)
+ +||+++|+++|+|++.||++|+++|++|+||+|||||+|.++ |..+.+|..++.++.....|.+.|+|||.+++||+
T Consensus 150 l~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~G~~ 228 (407)
T cd00828 150 SSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFV 228 (407)
T ss_pred cCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCCCCCCCcccCCCcCCCCcEE
Confidence 9 999999999999999999999999999999999999999977 99999999999999765567789999999999999
Q ss_pred ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcC-cCchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPH-PDGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 395 ~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~-p~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
+|||++++|||++++|++||++||++|+|++.++|+++.+.|. +.++...+.++. -+|+|||+|||||.+
T Consensus 229 ~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~ 306 (407)
T cd00828 229 EAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPA 306 (407)
T ss_pred eecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHcCEEecccccCcc
Confidence 9999999999999999999999999999999999999988774 444444433333 199999999999976
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=406.28 Aligned_cols=285 Identities=24% Similarity=0.287 Sum_probs=229.7
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCcc-ccccCCHHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPK-LSKRMDKFMLYLL 240 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~-ea~~mdp~~rl~L 240 (470)
+..++|||||||+++|.|.++++||++|.+|+++ ..++.++...++....+ +++++.+++++ +.++||+.+++.+
T Consensus 3 ~~~~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~~r~~~~a~ 78 (398)
T PRK06519 3 MQPNDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETFAPYPVHPLP---EIDWSQQIPKRGDQRQMETWQRLGT 78 (398)
T ss_pred CCCCCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccccCcCccccc---ccChhhcCCchhhhhccCHHHHHHH
Confidence 3467999999999999999999999999999998 33332222233333333 34444556666 7789999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHH------------HHHHH-hhhhcCCCccccccchhhHH
Q 012130 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA------------IEALR-ISYKKMNPFCVPFATTNMGS 307 (470)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~------------~~~~~-~~~~~~~p~~~~~~~~~~~a 307 (470)
.++.+||+|||+... ..+..|+||++|++.++.....+. +..+. .+++.++|+.++..++|.++
T Consensus 79 ~Aa~~Al~dAGl~~~---~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a 155 (398)
T PRK06519 79 YAAGLALDDAGIKGN---EELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLA 155 (398)
T ss_pred HHHHHHHHHcCCCCC---CCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHH
Confidence 999999999999753 345679999999999887654432 11222 24456789999999999999
Q ss_pred HHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcC-C
Q 012130 308 AMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRP-W 386 (470)
Q Consensus 308 ~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rp-F 386 (470)
++|++.||++||+++|+++|+||+.||++|+++|++|+||++||||+|..++|..+..|..++.|+. ..|+| |
T Consensus 156 ~~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ls~------~~~~p~~ 229 (398)
T PRK06519 156 GNISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLK------GGWAPVW 229 (398)
T ss_pred HHHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCccCC------CCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999873 35666 5
Q ss_pred CC---CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh------ccccEEEE
Q 012130 387 DI---NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN------FSVQMKSL 457 (470)
Q Consensus 387 d~---~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~------~~i~~vea 457 (470)
|. +++||++|||+++||||++++|++||++|||+|+|++. |+++. ++.++...+..+. -+|+||.+
T Consensus 230 d~~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~--d~~~~---~~~~~~~am~~AL~~Agl~~~IdyI~a 304 (398)
T PRK06519 230 SRGGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVES--DRARR---APGDLEASLERLLKPAGGLAAPTAVIS 304 (398)
T ss_pred ccCccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEee--cCCCC---ChHHHHHHHHHHHHHCCCcccCCEEEe
Confidence 65 69999999999999999999999999999999999965 43321 2334444433332 29999999
Q ss_pred eeeccee
Q 012130 458 NGFGKFY 464 (470)
Q Consensus 458 hGtGT~l 464 (470)
|||||.+
T Consensus 305 hgtgT~~ 311 (398)
T PRK06519 305 GATGAHP 311 (398)
T ss_pred CCCCCCC
Confidence 9999976
|
|
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=411.42 Aligned_cols=285 Identities=40% Similarity=0.683 Sum_probs=249.8
Q ss_pred ccCCCCCCHHHHHHHHHcCCCcceeCCCCC----------------CCCCCcccccccc--CCCCCCCCCccccccCCHH
Q 012130 174 LVSPLGHEPDVFYNNLLEGVSGISEIETFD----------------CTSFPTKIAAEIK--SFSTDGWVAPKLSKRMDKF 235 (470)
Q Consensus 174 ~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~----------------~~~~~~~~~g~i~--~fd~~~fi~p~ea~~mdp~ 235 (470)
+++|.|.++++||++|++|+++|+++++|+ ...++..+++.|+ +||+.+|... .++|++
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~f~~~~~~~~---~~~~~~ 77 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSEFDPSDFAPT---KRESRA 77 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcccCChhHcCCc---ccCCHH
Confidence 479999999999999999999999998876 4557778888887 6888777322 245999
Q ss_pred HHHHHHHHHHHHHhCCCC-cccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHH
Q 012130 236 MLYLLTAGKKALADGGIT-EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~-~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
++|++.++++||+|||+. ++ ..+..++||++|++.+++....+.+..+.. +...++|+.++..+.|.++++|++.
T Consensus 78 ~~l~~~aa~~Al~dAGl~~~~---~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 78 THFAMAAAREALADAKLDILS---EKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred HHHHHHHHHHHHHHcCCCccc---ccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999997 54 567789999999999888776666555543 4556788889999999999999999
Q ss_pred hCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCCc
Q 012130 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDG 392 (470)
Q Consensus 314 ~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~adG 392 (470)
|||+||+++|+++|+||+.||++|+++|++|+||++||||+|..++|..+.+|.+++.++.. +.+|+..|||||++++|
T Consensus 155 ~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~~G 234 (421)
T PTZ00050 155 HKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAG 234 (421)
T ss_pred hCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999998899999999999999854 45688899999999999
Q ss_pred ceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh--------ccccEEEEeeecc
Q 012130 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN--------FSVQMKSLNGFGK 462 (470)
Q Consensus 393 ~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~--------~~i~~veahGtGT 462 (470)
+++|||++++|||++++|+++|++|||+|+|+++++|++|++.|+|++.+... .+++ -+|+|||+|||||
T Consensus 235 ~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt 314 (421)
T PTZ00050 235 FVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANININDVDYVNAHATST 314 (421)
T ss_pred EeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHhccCCChhhCCEEECCCccC
Confidence 99999999999999999999999999999999999999999999988765432 2211 1799999999999
Q ss_pred ee
Q 012130 463 FY 464 (470)
Q Consensus 463 ~l 464 (470)
.+
T Consensus 315 ~~ 316 (421)
T PTZ00050 315 PI 316 (421)
T ss_pred CC
Confidence 65
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=403.13 Aligned_cols=273 Identities=33% Similarity=0.491 Sum_probs=229.8
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|+||||||||+++|.|. +++||++|++|+++|++++.|+. ++....+.+. + .+ ..++ ++...++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~--~~~~~~~~~~-~------~~---~~~~---~~~~~a~ 64 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE--LPPLPLGLIG-N------QP---SSLE---DLTKTVV 64 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc--cccccceeec-c------cc---cccc---HHHHHHH
Confidence 57999999999999999 99999999999999999988752 1111111110 0 01 1233 3566899
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhh----hcCCCccccccchhhHHHHHHHHhCCCCc
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY----KKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~~~a~~is~~~gl~Gp 319 (470)
++||+|+|++++ .+|+||++|++.++...+++++..+.++. ..++|..++..+.|.+++++++.||++||
T Consensus 65 ~~Al~dagl~~~------~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~Gp 138 (381)
T PRK05952 65 TAALKDAGLTPP------LTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGP 138 (381)
T ss_pred HHHHHhcCCCCC------CCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCCc
Confidence 999999999742 36899999999998887777766554321 24567777888999999999999999999
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceeccee
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGa 399 (470)
+++|+++|+||+.||.+|+++|++|++|++||||+|..++|..+.+|..+++|+ ++ .|||||+++|||++|||+
T Consensus 139 ~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls-----~~-~~rPfd~~r~G~v~gEGa 212 (381)
T PRK05952 139 VLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA-----KT-GAYPFDRQREGLVLGEGG 212 (381)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcC-----CC-CCCCCCCCCCCccccccE
Confidence 999999999999999999999999999999999999989999999999999997 33 599999999999999999
Q ss_pred EeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeeeccee
Q 012130 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 400 galvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGtGT~l 464 (470)
+++|||++++|+++|++||++|+|++.++|++|++.|+|+++.... .++. -+|+|||+|||||.+
T Consensus 213 a~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~ 286 (381)
T PRK05952 213 AILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRL 286 (381)
T ss_pred EEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCC
Confidence 9999999999999999999999999999999999999988765443 2221 289999999999976
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=390.09 Aligned_cols=292 Identities=30% Similarity=0.338 Sum_probs=242.6
Q ss_pred CCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHH
Q 012130 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~a 242 (470)
...+|+|||||+++|.|.++++||++|++|+++|+++++|+...+..++++.++.|+.. ....+++.+++.+.+
T Consensus 9 ~~~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~a 82 (425)
T PRK06501 9 GRPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPES------PFGASALSEALARLA 82 (425)
T ss_pred CCcCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccc------cccccCHHHHHHHHH
Confidence 34689999999999999999999999999999999999999888888999988643322 233467889999999
Q ss_pred HHHHHHhCCCCccccc-----------ccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHH
Q 012130 243 GKKALADGGITEDVMN-----------ELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAML 310 (470)
Q Consensus 243 a~eALedAG~~~~~~~-----------~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~i 310 (470)
+++||+|||+...... ...+.+++++.+........ ++.+. ....+..+..+.....+..+++|
T Consensus 83 a~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 158 (425)
T PRK06501 83 AEEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPS----YDRLLRAARGGRFDALHERFQFGSIADRL 158 (425)
T ss_pred HHHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCccHHH----HHHHHhhcCcccCChhhhhhcccHHHHHH
Confidence 9999999999532100 01246888988876544322 22222 22222233345566677889999
Q ss_pred HHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC
Q 012130 311 AMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (470)
Q Consensus 311 s~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a 390 (470)
++.||++||+++|+++|+|+++||++|+++|++|++|++||||+|..++|..+..|..++.|+..++.|+..|||||.++
T Consensus 159 ~~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r 238 (425)
T PRK06501 159 ADRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDR 238 (425)
T ss_pred HHHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999998999999999999999977777889999999999
Q ss_pred CcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeec
Q 012130 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFG 461 (470)
Q Consensus 391 dG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtG 461 (470)
+||++|||++++|||++++|+++|++||++|.|++.++|++|.+.|+|+++... +.++. -+|+||++||||
T Consensus 239 ~G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~AL~~agi~p~dId~i~~Hgtg 318 (425)
T PRK06501 239 DGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTS 318 (425)
T ss_pred CCeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCcc
Confidence 999999999999999999999999999999999999999999988888876543 22222 199999999999
Q ss_pred cee
Q 012130 462 KFY 464 (470)
Q Consensus 462 T~l 464 (470)
|.+
T Consensus 319 t~~ 321 (425)
T PRK06501 319 TPE 321 (425)
T ss_pred Ccc
Confidence 986
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=389.77 Aligned_cols=286 Identities=27% Similarity=0.470 Sum_probs=245.3
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCC--CCCCCCC----------CccccccccC---CCCCCC-CCccc
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSF----------PTKIAAEIKS---FSTDGW-VAPKL 228 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~--~~~~~~~----------~~~~~g~i~~---fd~~~f-i~p~e 228 (470)
++|||||||+++|+|.++++||++|.+|++++++++ +|+...+ +..+++.+++ ||+.+| +++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHHH
Confidence 479999999999999999999999999999999985 5654432 4556666665 677767 89999
Q ss_pred cccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHH
Q 012130 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (470)
Q Consensus 229 a~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~ 308 (470)
.+.||++++|+++++++||+|||++++ ..+..++||++|+..+++... .......++++.++....+..++
T Consensus 81 ~~~~~~~~~l~~~aa~~AL~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~ 151 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGYSPE---SLAGSRTGVFVGASSSDYLEL------LARDPDEIDAYAATGTSRAFLAN 151 (421)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCch---hcCCCCceEEeCcCHHHHHHH------HhhcccccCcccccCcchHHHHH
Confidence 999999999999999999999999875 567889999999987643222 11222346788888888899999
Q ss_pred HHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCC
Q 012130 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (470)
Q Consensus 309 ~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~ 388 (470)
++++.||++||+++|+++|+|++.||+.|+++|++|++|++||||+|.++++..+..|..++.++ +++.|+|||.
T Consensus 152 ~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~~ 226 (421)
T cd00833 152 RISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPFDA 226 (421)
T ss_pred HHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC-----CCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988999999999999998 7778999999
Q ss_pred CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCC--CcCcCchhHHHHHhh-------ccccEEEEee
Q 012130 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--EPHPDGKSAMSLRLN-------FSVQMKSLNG 459 (470)
Q Consensus 389 ~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t--~P~p~g~~~~~~~~~-------~~i~~veahG 459 (470)
+++|+++|||++++|||++++|+++|++||++|+|++.++|+++.. .|+..++...+.+++ .+|+|||+||
T Consensus 227 ~~~g~~~geGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~Agi~~~did~i~~hg 306 (421)
T cd00833 227 DADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHG 306 (421)
T ss_pred CCCCeeeeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHCcEEEeeC
Confidence 9999999999999999999999999999999999999999997544 444444444433332 2899999999
Q ss_pred eccee
Q 012130 460 FGKFY 464 (470)
Q Consensus 460 tGT~l 464 (470)
|||.+
T Consensus 307 tgt~~ 311 (421)
T cd00833 307 TGTPL 311 (421)
T ss_pred CCCCC
Confidence 99976
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=386.75 Aligned_cols=284 Identities=25% Similarity=0.421 Sum_probs=244.8
Q ss_pred EEEEeecccCCCCCCHHHHHHHHHcCCCcceeCC--CCCCCCC------------Ccccccccc---CCCCCCC-CCccc
Q 012130 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSF------------PTKIAAEIK---SFSTDGW-VAPKL 228 (470)
Q Consensus 167 VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~--~~~~~~~------------~~~~~g~i~---~fd~~~f-i~p~e 228 (470)
|+|||||+++|.|.++++||++|.+|++++++++ +|+...+ +...++.++ +||+..| +++++
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~~ 80 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPRE 80 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHHH
Confidence 7999999999999999999999999999999985 6765443 345555443 5888888 99999
Q ss_pred cccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHH
Q 012130 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (470)
Q Consensus 229 a~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~ 308 (470)
.+.||++++|+++++.+||+|||++++ +++.+|+|||+|+..+++. ..+.......+++.++..+.+..++
T Consensus 81 ~~~~~~~~~l~~~aa~~Al~dAGl~~~---~id~~~~gv~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~ 151 (424)
T smart00825 81 AEAMDPQQRLLLEVAWEALEDAGIDPE---SLRGSRTGVFVGAMSSDYA------ELLARDPEDIEGYAATGTARSFIAN 151 (424)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCChh---HcCCCCCEEEEEEcHHHHH------HHHhhCccccchhhhccchhHHHHH
Confidence 999999999999999999999999876 6677899999998865432 2222344556777778888888999
Q ss_pred HHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCC
Q 012130 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (470)
Q Consensus 309 ~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~ 388 (470)
+|++.||++||+++|+++|+|++.||++|+++|++|++|.+||||+|..+++..+..|..++.++ +++.|+|||.
T Consensus 152 ~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~~ 226 (424)
T smart00825 152 RISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS-----PDGRCKTFDA 226 (424)
T ss_pred HHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC-----CCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999989999999999999988 7889999999
Q ss_pred CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCC--CCcCcCchhHHHHHhh-------ccccEEEEee
Q 012130 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHM--TEPHPDGKSAMSLRLN-------FSVQMKSLNG 459 (470)
Q Consensus 389 ~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~--t~P~p~g~~~~~~~~~-------~~i~~veahG 459 (470)
+++|+++|||++++|||++++|+++|++||++|+|++.++|+++. +.|+..++...+.++. -+|+||++||
T Consensus 227 ~~~g~~~geGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~dId~i~~h~ 306 (424)
T smart00825 227 DADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVEAHG 306 (424)
T ss_pred CCCcccccceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHhCCCHHHccEEEeeC
Confidence 999999999999999999999999999999999999999999864 4455444444433332 2899999999
Q ss_pred eccee
Q 012130 460 FGKFY 464 (470)
Q Consensus 460 tGT~l 464 (470)
|||.+
T Consensus 307 tgt~~ 311 (424)
T smart00825 307 TGTPL 311 (424)
T ss_pred CCCCC
Confidence 99985
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=358.09 Aligned_cols=235 Identities=41% Similarity=0.679 Sum_probs=189.3
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCC-CCCCCCC---CccccccccC----------CCCCCC-CCccc
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSF---PTKIAAEIKS----------FSTDGW-VAPKL 228 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~~---~~~~~g~i~~----------fd~~~f-i~p~e 228 (470)
|++|||||||+++|+|.++++||++|.+|++++++++ +|+...+ +....+.++. ||..++ +++++
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPERWDPSDYYDPPSRVAGEIDDKKGGFIDDFDFDAYFFGIPPRE 80 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCSSSCHTTSTTSSCSEEECBSSSEESSSTTTCGGGTSTCHHHHH
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeeccccccccccccCCcccccccccccceeeecccccccccccchh
Confidence 6899999999999999999999999999999999998 7877776 4555666554 555555 77788
Q ss_pred cccCCHHHHHHHHHHHHHHHhCCCCcccccccCCC-eeEEEEeccCCchhhHHHHHHHHHh-h--hhcCCCccccccchh
Q 012130 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKS-KCGVLIGSGLGGMKVFYDAIEALRI-S--YKKMNPFCVPFATTN 304 (470)
Q Consensus 229 a~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~-rvGV~vG~~~g~~~~~~~~~~~~~~-~--~~~~~p~~~~~~~~~ 304 (470)
.+.||+++++++.++++||+|||+.++ .++.. ++|||+|++.+++. .+..+.. . +....|+.+...++|
T Consensus 81 ~~~~~~~~~~~l~aa~~Al~dAg~~~~---~~~~~~r~gv~~G~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T PF00109_consen 81 ARRMDRQSRLALAAAREALEDAGLDPD---DLDGERRVGVFVGSSSGDYE----FYRALDEDGETPRDVSPWFVPNTLPN 153 (254)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHTSTGG---GHTGGGTEEEEEEESSSHHH----HHHHHHHHTTCGGGSHTTHHHHHSTT
T ss_pred hhhhhhhhhHHHHHhhhhccccccccc---ccccccceeecccccccccc----ccccccccccccccccccccCccccc
Confidence 889999999999999999999999875 44455 59999999988552 2222322 2 344556444556899
Q ss_pred hHHHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCc
Q 012130 305 MGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (470)
Q Consensus 305 ~~a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~r 384 (470)
.++++|++.||++||+++|+++|+||+.||+.|+++|++|+||+|||||+|..++|..+.+|.++++++ +++.|+
T Consensus 154 ~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s-----~~~~~~ 228 (254)
T PF00109_consen 154 SAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALS-----ADGPCR 228 (254)
T ss_dssp HHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB------TTSGGG
T ss_pred ccccchhhhcCCCCccccccccccccccccchhcccccccccccccccccccccccccccccccccccc-----cccccc
Confidence 999999999999999999999999999999999999999999999999999889999999999999888 557899
Q ss_pred CCCCCCCcceecceeEeEeeccchhH
Q 012130 385 PWDINRDGFVMGEGAGVLLLEELEHA 410 (470)
Q Consensus 385 pFd~~adG~v~GEGagalvLe~l~~A 410 (470)
|||.+++||++|||+|+||||++++|
T Consensus 229 pf~~~~~G~v~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 229 PFDPFADGFVLGEGAGALVLERLEHA 254 (254)
T ss_dssp STBTTB-SB-BB-EEEEEEEEEHHHH
T ss_pred ccCCCCCCEEEECceEEEEEEEhhhC
Confidence 99999999999999999999999987
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=394.69 Aligned_cols=283 Identities=24% Similarity=0.381 Sum_probs=250.3
Q ss_pred CCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCC-CCCCCCC--ccccc---cccCCCCCCC-CCccccccCCHH
Q 012130 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIET-FDCTSFP--TKIAA---EIKSFSTDGW-VAPKLSKRMDKF 235 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~-~~~~~~~--~~~~g---~i~~fd~~~f-i~p~ea~~mdp~ 235 (470)
.+++|||.||+.++|..+++++||++|.+|.+.+++-++ |.. +++ .+..| ++..||..|| ..+|++..||||
T Consensus 9 ~~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~rrW~~-G~ygLP~r~gKlKdL~kFDa~ff~vh~KQa~~MDPq 87 (2376)
T KOG1202|consen 9 KQEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEA-GLYGLPKRSGKLKDLNKFDAGFFGVHPKQANTMDPQ 87 (2376)
T ss_pred cCCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcccccc-cccCCchhhcchhhhhhhcccccCcCcccccccCHH
Confidence 478999999999999999999999999999999988754 443 332 12223 3556999999 999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
.||+||+.|||+-||||.|+ +++++++|||+|.+..+...... ..+.....+..++....|.++||||.|+
T Consensus 88 ~RlLLE~t~EAivDaGiNP~---~LRGs~tGv~vg~s~seTs~~~~------~dp~t~~Gy~mtgc~raMfaNRiSytFD 158 (2376)
T KOG1202|consen 88 LRLLLEATWEAIVDAGINPD---DLRGSRTGVFVGVSGSETSGALS------QDPDTVNGYSMTGCVRAMFANRISYTFD 158 (2376)
T ss_pred HHHHHHHHHHHHHhCCCChh---hcCcccceeEEeecCcccccccc------CCCccccceeecccHHHHhhcceeEEEe
Confidence 99999999999999999998 89999999999998765543211 1233456677788889999999999999
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCccee
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~ 395 (470)
|+||++++||+|+|++.|+..|++.|+.|+||.+||+|+++.+.|.....|-++|+|| |+|.||.||+..|||++
T Consensus 159 fqGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls-----~dGsCkaFDeagnGY~R 233 (2376)
T KOG1202|consen 159 FQGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS-----PDGSCKAFDEAGNGYCR 233 (2376)
T ss_pred ccCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC-----CCCcccchhccCCceee
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCC---CCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 396 GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~---~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
+||+++++|.|.+.|++ +||.|.-..+|.||. ++|-|+.+-|.+++...+. ++-|||+|||||-+
T Consensus 234 seg~~avllqrk~~ArR----vYAtilnartNTDGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~sv~YvEAHGtGTkV 308 (2376)
T KOG1202|consen 234 SEGVVAVLLQRKSLARR----VYATILNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPESVVYVEAHGTGTKV 308 (2376)
T ss_pred cCceEEEEEehhHHHHH----HHHHhhccccCCCchhhcCccCCCcHHHHHHHHHHHHhcCCCcccEEEEEeccCCCCC
Confidence 99999999999888864 899999999999995 7999999999888766653 88899999999976
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=355.89 Aligned_cols=227 Identities=37% Similarity=0.555 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHH
Q 012130 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAML 310 (470)
Q Consensus 232 mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~i 310 (470)
||+.+++.+.++++||+|||+. .++.|+||++|++.+++...++.++.+. .+.+.++|+.++..+.|+++++|
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~------~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~i 74 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT------EKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHV 74 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC------CCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHH
Confidence 6789999999999999999975 2456999999999999988888776654 35567899999999999999999
Q ss_pred HHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCC
Q 012130 311 AMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDIN 389 (470)
Q Consensus 311 s~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~ 389 (470)
++.||++||+++|+++|+||+.||+.|+++|++|++|+|||||+|..++|..+.+|..+++|+.. +++|++.|||||++
T Consensus 75 s~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~ 154 (342)
T PRK14691 75 SIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTA 154 (342)
T ss_pred HHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999864 56789999999999
Q ss_pred CCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeee
Q 012130 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGF 460 (470)
Q Consensus 390 adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGt 460 (470)
+|||++|||++++|||++++|+++|++||++|+|++.++|+++++.|+|++.+... .+++ .+|+|||+|||
T Consensus 155 r~G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgt 234 (342)
T PRK14691 155 RDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHAT 234 (342)
T ss_pred CCCccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCC
Confidence 99999999999999999999999999999999999999999999988887766542 2222 18999999999
Q ss_pred ccee
Q 012130 461 GKFY 464 (470)
Q Consensus 461 GT~l 464 (470)
||.+
T Consensus 235 gT~~ 238 (342)
T PRK14691 235 STPV 238 (342)
T ss_pred CCcC
Confidence 9986
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=355.84 Aligned_cols=278 Identities=25% Similarity=0.332 Sum_probs=227.5
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCC-CcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGV-SGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~-s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~a 242 (470)
|++|||||+|+++|.|.++++||++|++|+ ++|++++.|+.. ++. ..+.+++|+. .+++.+..+.|++..++.+.+
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 77 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVD-LPT-WVGEVVGVEL-PALPAALAAFDCRNNRLALLA 77 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccccc-CCe-EEEEecCccc-ccCCHHHHhcCCHHHHHHHHH
Confidence 579999999999999999999999999999 999999877643 433 3466777773 446666778889888887777
Q ss_pred HHH---HHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhh-cCCCccccccchhhHHHHHHHHhCCCC
Q 012130 243 GKK---ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYK-KMNPFCVPFATTNMGSAMLAMDLGWMG 318 (470)
Q Consensus 243 a~e---ALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~a~~is~~~gl~G 318 (470)
+.+ |++|++- ..+.+|+||++|++.++....+..+..+..... ...++.++....+..+++|++.||++|
T Consensus 78 ~~~~~~a~~~~~~------~~~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~G 151 (392)
T PRK09185 78 LQQIEPAVEAAIA------RYGADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSLADFLRAYLGLSG 151 (392)
T ss_pred HHHHHHHHHhhcc------cCCCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhhhcccHHHHHHHHHhCCCC
Confidence 666 5555541 345679999999999988877776655432211 224566677788899999999999999
Q ss_pred cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecce
Q 012130 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 319 ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEG 398 (470)
|+++++++|+|++.||++|+++|++|+||.+||||+|. +++..+..|..++.++ .+.|+|||.+++||++|||
T Consensus 152 p~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~------~~~~~Pfd~~~~G~~~gEG 224 (392)
T PRK09185 152 PAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS------PQPCRPFSANRDGINIGEA 224 (392)
T ss_pred CcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccC------CCccCCCcCCCCccceece
Confidence 99999999999999999999999999999999999997 6777778898888886 3589999999999999999
Q ss_pred eEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHH--HHhh-------ccccEEEEeeeccee
Q 012130 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMS--LRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 399 agalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~--~~~~-------~~i~~veahGtGT~l 464 (470)
++++|||++ ++++ ++|.|++.++|++|++.|+|++.++.. .++. -+|+|||+|||||.+
T Consensus 225 aa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~ 292 (392)
T PRK09185 225 AAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPL 292 (392)
T ss_pred EEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEeCCCCCcC
Confidence 999999986 3444 479999999999999999988765432 2222 189999999999975
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=251.57 Aligned_cols=252 Identities=17% Similarity=0.156 Sum_probs=184.2
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|++|+|+|+|+++|.|.+.++.|.+|+.|.+...+.+.++.... ..+.. ..++-++.....++..+|+..++
T Consensus 2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~-~~i~~-------~~~~~~~~~~~~~r~~~La~~Al 73 (348)
T PRK06147 2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGG-EWLIG-------APVPLPPPWRGPERLAEMAAPAI 73 (348)
T ss_pred CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCC-CceEe-------ecCcCCcccCchHHHHHHHHHHH
Confidence 56799999999999999999999999999877654433322100 00000 01111222233457889999999
Q ss_pred HHHHHhCC-CCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC--CCcc
Q 012130 244 KKALADGG-ITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MGPN 320 (470)
Q Consensus 244 ~eALedAG-~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl--~Gps 320 (470)
.+||++++ +.+ .+++++++....+. +..+..+ ....+..++..+|+ +||+
T Consensus 74 ~~aL~~a~~~~~--------~~i~lil~~~~~~~---------------~~~~~~~----~~~~~~~~~~~lG~~~~~~~ 126 (348)
T PRK06147 74 AEALEGLPALDA--------SEAPLLLCVAEEER---------------PGRPPDL----EERLLRELEARLGLRLEPGS 126 (348)
T ss_pred HHHHHhcccccc--------cCCcEEEEeCchhc---------------CCCCcch----HHHHHHHHHHHhCCCCCCCc
Confidence 99999988 332 35678887653110 0011111 12235667778887 5889
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeE
Q 012130 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
++|.++|+|+++||..|+++|+.|++|.+||||+|.++.+..+..|...+.|.. +.+++||++|||++
T Consensus 127 ~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~------------~~~~~G~v~GEGA~ 194 (348)
T PRK06147 127 AVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT------------SQNSNGFIPGEAAA 194 (348)
T ss_pred ccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC------------CCCCCceeeeceEE
Confidence 999999999999999999999999999999999999888888888877766651 13789999999999
Q ss_pred eEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCC--c-CcCchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE--P-HPDGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~--P-~p~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
++|||++++|+++|++||+ .|++.+.|+.|.+. | +.+++...+.++. .+|+||.+|||||.+
T Consensus 195 a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~ 266 (348)
T PRK06147 195 AVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEAGCGLEDMDYRIADLNGEQY 266 (348)
T ss_pred EEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCcc
Confidence 9999999999999999999 78888888876553 3 2333333333332 189999999999976
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=239.15 Aligned_cols=219 Identities=32% Similarity=0.462 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
+++|+++++++||++||++++ ....+..+||+|++.+.+..... .......+.|+.+.....+..+++|+..+
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~---~~~~~i~~ii~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 83 (332)
T cd00825 11 VSILGFEAAERAIADAGLSRE---YQKNPIVGVVVGTGGGSPRFQVF----GADAMRAVGPYVVTKAMFPGASGQIATPL 83 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCcc---ccCCCCEEEEEEeCCccHHHHhh----hhccccccCcchhhcccchHHHHHHHHHh
Confidence 678999999999999999854 34456779999998766542211 12233466888888888899999999999
Q ss_pred CCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcce
Q 012130 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (470)
Q Consensus 315 gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v 394 (470)
|++||+++|+++|+|++.||++|+++|++|++|.+||+|+|....+.........+.+. |++.|+|||...+|++
T Consensus 84 gl~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~ 158 (332)
T cd00825 84 GIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALST-----PEKASRTFDAAADGFV 158 (332)
T ss_pred CCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhccccC-----CCCCCCCCCCCCCCEE
Confidence 99999999999999999999999999999999999999999876665544333333443 7889999999999999
Q ss_pred ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCc--CchhHHHHHhh-------ccccEEEEeeecceec
Q 012130 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP--DGKSAMSLRLN-------FSVQMKSLNGFGKFYF 465 (470)
Q Consensus 395 ~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p--~g~~~~~~~~~-------~~i~~veahGtGT~l~ 465 (470)
+|||++++||++.++|+++|+++|++|.|++..+|+.+...+.+ ++....+..+. -+|+|++.|++||.+.
T Consensus 159 ~gdGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~ 238 (332)
T cd00825 159 FGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIG 238 (332)
T ss_pred EEeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCC
Confidence 99999999999999999999999999999999999876554333 33333332222 2899999999999763
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=164.54 Aligned_cols=164 Identities=29% Similarity=0.414 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
.+.++.+++.+||+++|++++ +..+|++|+..+++. .+..+.+|++.+
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~-------~i~~li~~~~~~~~~-------------------------~~~~a~~i~~~l 54 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKG-------PIVGVIVGTTGGSGE-------------------------FSGAAGQLAYHL 54 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-------CceEEEEEECCCCcc-------------------------ccHHHHHHHHHh
Confidence 578999999999999999865 233899998754321 244578999999
Q ss_pred CC-CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 315 GW-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 315 gl-~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
|+ ++|+++|+++|+|++.||++|.++|+.|++|.+||+|+|. +
T Consensus 55 g~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~------------------------------------~ 98 (254)
T cd00327 55 GISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------------F 98 (254)
T ss_pred CCCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce------------------------------------e
Confidence 99 8999999999999999999999999999999999999996 6
Q ss_pred eecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCC-CcCcCchhHHHHHhh-------ccccEEEEeeecceec
Q 012130 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT-EPHPDGKSAMSLRLN-------FSVQMKSLNGFGKFYF 465 (470)
Q Consensus 394 v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t-~P~p~g~~~~~~~~~-------~~i~~veahGtGT~l~ 465 (470)
++|||++++||++.+++.+++++++++|.++....++.+.. .+.++.....+.+.. -+++++++|+++|.++
T Consensus 99 ~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~ 178 (254)
T cd00327 99 VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIG 178 (254)
T ss_pred eecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCccc
Confidence 79999999999999999999999999999999988876432 334444444333322 1899999999999875
Q ss_pred c
Q 012130 466 I 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 179 ~ 179 (254)
T cd00327 179 D 179 (254)
T ss_pred c
Confidence 3
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=148.89 Aligned_cols=133 Identities=23% Similarity=0.311 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....|+.+++.+||+++|++++ +++ .|++++...++ .. ...+..++..
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~---~Id----~li~~~~~~~~--------------------~~-----p~~a~~v~~~ 141 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAE---DID----AVIVACSNMQR--------------------AY-----PAMAIEIQQA 141 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCCCC--------------------CC-----cHHHHHHHHh
Confidence 3457999999999999999876 333 57777652111 01 1135678999
Q ss_pred hCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 314 ~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
+|+++++++|+.+|+|++.||..|+++|++|.+|.+||+|+|.+. .. + -|+....++
T Consensus 142 Lgl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~------------~~~d~~~~~ 198 (372)
T PRK07515 142 LGIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICS-GH----------L------------NFRDRDSHF 198 (372)
T ss_pred cCCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeeccc-cc----------c------------cccCCCCCE
Confidence 999999999999999999999999999999999999999999721 10 0 012223689
Q ss_pred eecceeEeEeeccchhHHhcC-CeeeEEE
Q 012130 394 VMGEGAGVLLLEELEHAKKRG-AKIYAEF 421 (470)
Q Consensus 394 v~GEGagalvLe~l~~A~~~G-~~I~a~I 421 (470)
++|||++++||++.+++..++ ..|++..
T Consensus 199 lfGDgAaA~vL~~~~~~~~~~~~~il~~~ 227 (372)
T PRK07515 199 IFGDVATAVIVERADTATSAGGFEILGTR 227 (372)
T ss_pred EecCccEEEEEeeccccccCCCceEEEEE
Confidence 999999999999876654333 2566654
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-14 Score=146.48 Aligned_cols=197 Identities=20% Similarity=0.268 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|+|++++ +++ +|++|+..++... . ....+..++..+|
T Consensus 23 ~eLa~~a~~~Al~dagl~~~---~Id----~vi~g~~~~~~~~---------------------~--~~~~a~~va~~lG 72 (389)
T PRK06064 23 RDLAVEAGLEALEDAGIDGK---DID----AMYVGNMSAGLFV---------------------S--QEHIAALIADYAG 72 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccccc---------------------c--cccHHHHHHHHcC
Confidence 56889999999999999876 333 6888876432210 0 0124677899999
Q ss_pred CC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hh-hh------------H---Hhh---hccccc-
Q 012130 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PI-GL------------G---GFV---ACRALS- 373 (470)
Q Consensus 316 l~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~-~~------------~---~f~---~~~~Ls- 373 (470)
++ +|.++|+++|+|++.||..|+++|++|++|.+||+|+|.+.. +. .. . ++. ..++++
T Consensus 73 l~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (389)
T PRK06064 73 LAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIAR 152 (389)
T ss_pred CCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHHH
Confidence 98 799999999999999999999999999999999999986321 10 00 0 000 000000
Q ss_pred --------------------CCC--CCCCCC----------------CcCCCCCCCcceecceeEeEeeccchhHHhcCC
Q 012130 374 --------------------QRN--NDPTKA----------------SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGA 415 (470)
Q Consensus 374 --------------------~~~--~~~~~~----------------~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~ 415 (470)
+.+ .+|... +.|+. --|--.++||++++||++.+.|+++++
T Consensus 153 ~~~~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~~~ 231 (389)
T PRK06064 153 RYMHKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEYTD 231 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHhcC
Confidence 000 001100 11111 123446899999999999999999986
Q ss_pred eeeEEEEEEeeccCCCCCCCc----CcCchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 416 KIYAEFRGGSFTSDAYHMTEP----HPDGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 416 ~I~a~I~G~a~~~dg~~~t~P----~p~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
++ .+|+|++..++..++... .+.+....+.++. .+|+|+|+|++.|..
T Consensus 232 ~~-v~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d~ft~~ 290 (389)
T PRK06064 232 TP-VWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIA 290 (389)
T ss_pred CC-eEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCCCcHH
Confidence 65 589999999998765432 2223222222222 299999999998864
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=139.80 Aligned_cols=188 Identities=21% Similarity=0.272 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .|++|+..... ...+ .+..++..+|
T Consensus 27 ~~La~~A~~~AL~~agl~~~---dID----~vi~g~~~~~~------------------------~~~~-~a~~va~~lG 74 (393)
T PRK05656 27 VELGAAVIRRLLEQTGLDPA---QVD----EVILGQVLTAG------------------------AGQN-PARQAAIKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEecCCC------------------------CCCc-HHHHHHHHcC
Confidence 46889999999999999886 344 68888763110 0111 3566889999
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhh---------------hHH-----hhh--cc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG---------------LGG-----FVA--CR 370 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~---------------~~~-----f~~--~~ 370 (470)
+. -|+++|+++|+|++.||+.|+++|++|.+|.+||+|+|.+.. |.. +.. +.. .+
T Consensus 75 l~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05656 75 LPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFND 154 (393)
T ss_pred CCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccccC
Confidence 96 499999999999999999999999999999999999996542 110 000 000 00
Q ss_pred c-------------------------ccCCC---CCCCCCCc----CCCC------------------------------
Q 012130 371 A-------------------------LSQRN---NDPTKASR----PWDI------------------------------ 388 (470)
Q Consensus 371 ~-------------------------Ls~~~---~~~~~~~r----pFd~------------------------------ 388 (470)
. .|+++ ..|.+..+ |+..
T Consensus 155 ~~~a~~a~~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 234 (393)
T PRK05656 155 YHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcCCC
Confidence 0 00000 00111111 2110
Q ss_pred --CCCcce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchh--HHHHHhh-------c
Q 012130 389 --NRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKS--AMSLRLN-------F 450 (470)
Q Consensus 389 --~adG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~--~~~~~~~-------~ 450 (470)
..+|.+ ++||++++||+++++|+++|.+|+++|+|++.... .|++.+.+ ....+++ .
T Consensus 235 ~~~~~g~lt~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~ 309 (393)
T PRK05656 235 AFKKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGV-----DPAIMGIGPVSATRRCLDKAGWSLA 309 (393)
T ss_pred CcCCCCCEEccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecC-----CCcccchhHHHHHHHHHHHcCCCHH
Confidence 024557 89999999999999999999999999999998753 44443322 2323222 2
Q ss_pred cccEEEEeee
Q 012130 451 SVQMKSLNGF 460 (470)
Q Consensus 451 ~i~~veahGt 460 (470)
||+|+|+|.+
T Consensus 310 dId~~e~~d~ 319 (393)
T PRK05656 310 ELDLIEANEA 319 (393)
T ss_pred HCCEEEecCc
Confidence 9999999987
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-13 Score=139.34 Aligned_cols=193 Identities=21% Similarity=0.238 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|+..+++. . ...+..+...+|
T Consensus 23 ~~La~~A~~~AL~dAgl~~~---dID----~vi~~~~~~~~~--------------------~-----~~~a~~v~~~lG 70 (386)
T cd00751 23 DDLGAAVIKALLERAGLDPE---EVD----DVIMGNVLQAGE--------------------G-----QNPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHHHHhcCCCHH---HCC----EEEEEeccCCCC--------------------C-----ChHHHHHHHHcC
Confidence 67899999999999999876 343 677876532110 0 123556888999
Q ss_pred CCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhhh-------------------HHhhh-----
Q 012130 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGL-------------------GGFVA----- 368 (470)
Q Consensus 316 l~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~~-------------------~~f~~----- 368 (470)
+.. |.+.|+++|+|++.||..|+++|++|++|.+||+|+|.+.. +... .++..
T Consensus 71 l~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (386)
T cd00751 71 LPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFTGL 150 (386)
T ss_pred CCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccccCcccccccccccccCccccccccccccccccCCC
Confidence 975 89999999999999999999999999999999999986421 1000 00000
Q ss_pred -cccccCC---------------------C----C-----------------------CCCCCCcC-------------C
Q 012130 369 -CRALSQR---------------------N----N-----------------------DPTKASRP-------------W 386 (470)
Q Consensus 369 -~~~Ls~~---------------------~----~-----------------------~~~~~~rp-------------F 386 (470)
++..+++ + . .|+...|+ |
T Consensus 151 ~~a~~a~~~~~~yg~tre~la~vav~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~r~~~t~e~v~~s~~i~ 230 (386)
T cd00751 151 SMGITAENVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVPGRKGPVVVDRDEGPRPDTTLEKLAKLKPAF 230 (386)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCCCc
Confidence 0000000 0 0 01111111 1
Q ss_pred CC-----CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccE
Q 012130 387 DI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQM 454 (470)
Q Consensus 387 d~-----~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~ 454 (470)
+. -.|=-.++||++++||++++.|+++|++++++|+|++.++++... .+.+......+++ .+|++
T Consensus 231 ~p~g~l~~~d~~~~~dGaaavvl~s~~~a~~~~~~~~~~I~g~~~~~~~~~~---~~~~~~~a~~~a~~~Agi~~~did~ 307 (386)
T cd00751 231 KKDGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPAI---MGIGPVPAIPKALKRAGLTLDDIDL 307 (386)
T ss_pred CCCCcEeCCcCCCCCcceEEEEEecHHHHHHCCCCeeEEEEEEEEccCCCcc---cchhHHHHHHHHHHHcCCCHHHcCE
Confidence 10 012223689999999999999999999999999999999886532 2333333333332 29999
Q ss_pred EEEeeecce
Q 012130 455 KSLNGFGKF 463 (470)
Q Consensus 455 veahGtGT~ 463 (470)
+|+|.+.|.
T Consensus 308 ~e~~d~f~~ 316 (386)
T cd00751 308 IEINEAFAA 316 (386)
T ss_pred EEeechhHH
Confidence 999998764
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=133.14 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++++||+|+|++++ +++ .|++|+...+.. . ...++..++..+
T Consensus 27 ~~dL~~~A~~~aL~~agi~~~---~ID----~vi~G~~~~~~~---------------------~---~~~~a~~i~~~l 75 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDPA---EVE----DVIMGCANPEGA---------------------T---GANIARQIALRA 75 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----cEEEEEeecccc---------------------c---ccHHHHHHHHHc
Confidence 467899999999999999987 344 488887643210 0 113577888888
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
|+. .|+++|+++|+||+.||+.|+++|++|++|++||||+|.+.
T Consensus 76 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms 121 (392)
T PRK07108 76 GLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESIS 121 (392)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccC
Confidence 985 79999999999999999999999999999999999999864
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=133.25 Aligned_cols=91 Identities=20% Similarity=0.338 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.++.+++|+|+|++++ +++ .||+|...+.. .....+..++...|
T Consensus 28 ~~L~~~a~~~al~~agi~~~---~Id----~vv~G~~~~~~-------------------------~g~~~~r~~~~~~G 75 (392)
T PRK06633 28 PMLAAHLIKDILQNSKIDPA---LVN----EVILGQVITGG-------------------------SGQNPARQTLIHAG 75 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEEecCccc-------------------------cccHHHHHHHHHCC
Confidence 35788999999999999886 333 58999764211 01123455778889
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+. =|.++|+++|+||+.|+..|++.|++|++|++||||+|.+.
T Consensus 76 l~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms 120 (392)
T PRK06633 76 IPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMS 120 (392)
T ss_pred CCCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 96 49999999999999999999999999999999999999765
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-12 Score=130.19 Aligned_cols=191 Identities=21% Similarity=0.276 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .|++|+....+. .....+..++...|
T Consensus 28 ~eL~~~A~~~AL~~agi~~~---dID----~vi~g~~~~~~~------------------------~~~~~a~~~~~~~G 76 (394)
T PRK09051 28 TDLGATVVREALARAGVDPD---QVG----HVVFGHVIPTEP------------------------RDMYLSRVAAINAG 76 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEeeeccccC------------------------CCccHHHHHHHHcC
Confidence 46889999999999999886 333 588887642110 00112344556778
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh----------------hH----Hhhh-----
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------------LG----GFVA----- 368 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~----------------~~----~f~~----- 368 (470)
+. -|.++|+++|+|++.|++.|+++|++|.+|.+||+|+|.+..... .. .+..
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T PRK09051 77 VPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTI 156 (394)
T ss_pred CCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 599999999999999999999999999999999999997543110 00 0000
Q ss_pred -cccc---------------------cCCC--C-------------------------CCCCCCc------------CCC
Q 012130 369 -CRAL---------------------SQRN--N-------------------------DPTKASR------------PWD 387 (470)
Q Consensus 369 -~~~L---------------------s~~~--~-------------------------~~~~~~r------------pFd 387 (470)
++.. ++.| . +|+...| |+.
T Consensus 157 ~~~~~a~~~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~v~ 236 (394)
T PRK09051 157 HMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKPVF 236 (394)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCCcc
Confidence 0000 0000 0 1333332 332
Q ss_pred CCCCcce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------cccc
Q 012130 388 INRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQ 453 (470)
Q Consensus 388 ~~adG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~ 453 (470)
...+|.+ ++||++++||++++.|++.|++++++|+|++...+..+.. ..+......+++ .+|+
T Consensus 237 ~~~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~~~~~~---~~~~~~a~~~al~~agi~~~did 313 (394)
T PRK09051 237 KKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDPEYM---GIGPVPATQKALERAGLTVADLD 313 (394)
T ss_pred cCCCccEeCCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEeccCCCcc---cccHHHHHHHHHHHcCCCHHHcC
Confidence 2222544 3799999999999999999999999999999886533221 122222222222 2999
Q ss_pred EEEEeee
Q 012130 454 MKSLNGF 460 (470)
Q Consensus 454 ~veahGt 460 (470)
++|+|..
T Consensus 314 ~~ei~d~ 320 (394)
T PRK09051 314 VIEANEA 320 (394)
T ss_pred EEEecCc
Confidence 9999975
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=130.68 Aligned_cols=196 Identities=22% Similarity=0.262 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++++||+|+|++++ +++ +|++|+...... ....+..++..+
T Consensus 16 ~~eL~~~A~~~Al~dagl~~~---~Id----~vi~g~~~~~~~-------------------------~~~~a~~va~~l 63 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPA---DID----AVVVGNAAGGRF-------------------------QSFPGALIAEYL 63 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccccccc-------------------------ccchHHHHHHHc
Confidence 357899999999999999875 333 678887532110 122467899999
Q ss_pred CC-CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHH---------hh---hccccc--------
Q 012130 315 GW-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGG---------FV---ACRALS-------- 373 (470)
Q Consensus 315 gl-~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~---------f~---~~~~Ls-------- 373 (470)
|+ ..|.++|+.+|+|++.+|+.|+++|++|++|.+||+|+|.+........ +. ..+.+.
T Consensus 64 Gl~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 143 (375)
T cd00829 64 GLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALA 143 (375)
T ss_pred CCCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHH
Confidence 99 4689999999999999999999999999999999999997543210000 00 000000
Q ss_pred ----------------------CCC--CCCCC----------------CCcCCCCCCCcceecceeEeEeeccchhHHhc
Q 012130 374 ----------------------QRN--NDPTK----------------ASRPWDINRDGFVMGEGAGVLLLEELEHAKKR 413 (470)
Q Consensus 374 ----------------------~~~--~~~~~----------------~~rpFd~~adG~v~GEGagalvLe~l~~A~~~ 413 (470)
+.+ .+|.. .+.|+.. .|--.++||++++||.+.+.|++.
T Consensus 144 a~~~~~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~~-~~~~~~~DGaaa~vl~s~~~a~~~ 222 (375)
T cd00829 144 ARRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLRL-LDCCPVSDGAAAVVLASEERAREL 222 (375)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCch-hhcCCCCCceeEEEEecHHHHhhc
Confidence 000 00110 1123321 344568999999999999999988
Q ss_pred CCeeeEEEEEEeeccCCCCCCCcCc----CchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 414 GAKIYAEFRGGSFTSDAYHMTEPHP----DGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 414 G~~I~a~I~G~a~~~dg~~~t~P~p----~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
.+++++|+|++..++..+++.++. .+....+.++. -||+++|+|..-|+.
T Consensus 223 -~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~did~~ei~d~F~~~ 283 (375)
T cd00829 223 -TDRPVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIA 283 (375)
T ss_pred -CCCCeEEEEEEEecCCccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH
Confidence 678999999999999887655432 22222323222 299999999876643
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-12 Score=130.25 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++.+||+++|++++ +++ .+++++..+++ ..+ ..+..|...+
T Consensus 63 ~~~La~~A~~~aL~~agi~~~---dId----~li~~s~~~~~--------------------~~p-----~~a~~v~~~L 110 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSLG---DIE----LLACGTSQPDQ--------------------LMP-----GHASMVHGEL 110 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEECCCCc--------------------CCh-----HHHHHHHhhC
Confidence 567999999999999999876 333 46777653221 111 1246788889
Q ss_pred CCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhh-cccccCCCCCCCCCCcCCCCCCCc
Q 012130 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA-CRALSQRNNDPTKASRPWDINRDG 392 (470)
Q Consensus 315 gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~-~~~Ls~~~~~~~~~~rpFd~~adG 392 (470)
|++. |.+.|..+|+|++.||+.|.++|++|..+.+||+|+|.+........|.. .+.+.. .++..+++|+.+.+|
T Consensus 111 gl~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 187 (378)
T PRK06816 111 GAPPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAE---LEENPEIAFEKDFLR 187 (378)
T ss_pred CCCCCceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhc---CcccCCCCCCCCCCC
Confidence 9865 88899999999999999999999999999999999998544433222321 233332 134567999999999
Q ss_pred ceecceeEeEeeccchh
Q 012130 393 FVMGEGAGVLLLEELEH 409 (470)
Q Consensus 393 ~v~GEGagalvLe~l~~ 409 (470)
|++|||++++||++.+.
T Consensus 188 ~~fGDGA~A~vl~~~~~ 204 (378)
T PRK06816 188 WMLSDGAGAVLLENKPR 204 (378)
T ss_pred EeeecccEEEEEEecCC
Confidence 99999999999987543
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=124.92 Aligned_cols=167 Identities=20% Similarity=0.309 Sum_probs=116.8
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccc-cCCHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSK-RMDKFMLYLLTA 242 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~-~mdp~~rl~L~a 242 (470)
..+.|+|+|...|.- .+-+++-+.+.--...|.... | |-++... .-.-..-|+.+|
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rt------------G----------ir~R~~a~~~e~~s~la~~A 59 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRT------------G----------IRERRIAADDETTSDLAVEA 59 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeec------------C----------CceeeecCCCccHHHHHHHH
Confidence 467899999999998 455555422222222222111 0 0011111 122355799999
Q ss_pred HHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cce
Q 012130 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (470)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~ 321 (470)
+++||++||+.++ +++ -|++.+...++ .....|.+|...||+++ +.+
T Consensus 60 a~~AL~~Agi~~~---dID----lII~aT~tpd~-------------------------~~Ps~A~~vq~~LG~~~~~af 107 (323)
T COG0332 60 ARKALEDAGISPD---DID----LIIVATSTPDH-------------------------LFPSTACLVQARLGLGGAPAF 107 (323)
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEcCCccc-------------------------CCChHHHHHHHHhCCCCccee
Confidence 9999999999987 333 46666653221 12345889999999988 999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
.+..+|++.++||..|.++|++|.++.+||.|.|. +|+ ---|+.....+++|+|||+
T Consensus 108 Dl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~---------------~S~--------~ld~~dR~t~vlFgDGAgA 164 (323)
T COG0332 108 DLQAACSGFLYALSVADGLIRSGGYKNVLVVGAET---------------LSR--------ILDWTDRDTCVLFGDGAGA 164 (323)
T ss_pred echhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhH---------------hhc--------cCCHhhccceEEEcCCceE
Confidence 99999999999999999999999999999999998 231 1122333577889999999
Q ss_pred Eeeccch
Q 012130 402 LLLEELE 408 (470)
Q Consensus 402 lvLe~l~ 408 (470)
+||++-+
T Consensus 165 vvl~~~~ 171 (323)
T COG0332 165 VVLEATE 171 (323)
T ss_pred EEEecCC
Confidence 9999865
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=125.49 Aligned_cols=170 Identities=20% Similarity=0.285 Sum_probs=117.1
Q ss_pred CCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~a 242 (470)
|.+|.|+++|...|.- ...+++++.+......+. .+ .+ +....+..+. .....|+.++
T Consensus 1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~--~~---~g-----------i~~r~~~~~~-----~~~~~la~~A 59 (319)
T PRK09352 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIV--TR---TG-----------IKERRIAAPD-----ETTSDLATEA 59 (319)
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhh--hh---cC-----------eEEEEeCCCC-----CCHHHHHHHH
Confidence 4578999999999998 678888776421110010 00 00 0000000011 2357899999
Q ss_pred HHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cce
Q 012130 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (470)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~ 321 (470)
+.+||+++|++++ +++ .|++|+...+. .. ...+..|+..+|+.+ |.+
T Consensus 60 ~~~al~~agl~~~---~id----~vi~~~~~~~~--------------------~~-----~~~~~~i~~~lG~~~~~~~ 107 (319)
T PRK09352 60 AKKALEAAGIDPE---DID----LIIVATTTPDY--------------------AF-----PSTACLVQARLGAKNAAAF 107 (319)
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CC-----chHHHHHHHHhCCCCCcEe
Confidence 9999999999876 333 57777753211 01 123678999999988 889
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
+|.++|+|++.||..|+++|++|++|.+||+|+|.+. .. + . ++....++++|||+++
T Consensus 108 ~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~-----------~-~~~~~~~~~~gDGaaA 164 (319)
T PRK09352 108 DLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLS-RI----------V-----------D-WTDRSTCVLFGDGAGA 164 (319)
T ss_pred eccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhc-cc----------c-----------C-cccCCceEEEeccceE
Confidence 9999999999999999999999999999999999732 11 0 0 1112346899999999
Q ss_pred Eeeccchh
Q 012130 402 LLLEELEH 409 (470)
Q Consensus 402 lvLe~l~~ 409 (470)
+||++.++
T Consensus 165 ~ll~~~~~ 172 (319)
T PRK09352 165 VVLGASEE 172 (319)
T ss_pred EEEEEcCC
Confidence 99998544
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-11 Score=127.08 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++++||+|+|++++ +++ ++++|+...++. . ...+..++..+
T Consensus 21 ~~~La~~A~~~Al~dAgl~~~---dID----~vv~g~~~~~~~--------------------~-----~~~a~~va~~l 68 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDPE---LID----DVIFGNVLQAGE--------------------Q-----QNIARQAALLA 68 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCCC--------------------C-----ChHHHHHHHHc
Confidence 367899999999999999876 344 677776532110 0 11345688888
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
|+. .|.+.|+++|+|++.||..|+++|++|.+|.+||+|+|.+
T Consensus 69 Gl~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~ 113 (386)
T TIGR01930 69 GLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESM 113 (386)
T ss_pred CCCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhh
Confidence 996 4899999999999999999999999999999999998864
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=123.32 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++++||+++|++++ +++ .+++++..+++ .....+.+|+..+
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~---dId----~li~~~~~~~~-------------------------~~p~~a~~v~~~l 99 (329)
T PRK07204 52 SSYMGAEAAKKAVEDAKLTLD---DID----CIICASGTIQQ-------------------------AIPCTASLIQEQL 99 (329)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCCCC-------------------------CCccHHHHHHHHh
Confidence 467999999999999999876 333 36666543211 0113477899999
Q ss_pred CCCC---cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCC
Q 012130 315 GWMG---PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (470)
Q Consensus 315 gl~G---ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ad 391 (470)
|+++ |++.|+.+|+|++.||+.|.++|++|.++.+||.++|... .. ..|+...+
T Consensus 100 gl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s-~~----------------------~~~~~~~~ 156 (329)
T PRK07204 100 GLQHSGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISS-VG----------------------LNWGQNES 156 (329)
T ss_pred CCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEecccc-CC----------------------CCcccCcc
Confidence 9985 8999999999999999999999999999999999999721 10 01223346
Q ss_pred cceecceeEeEeeccch
Q 012130 392 GFVMGEGAGVLLLEELE 408 (470)
Q Consensus 392 G~v~GEGagalvLe~l~ 408 (470)
++++|||++++||++.+
T Consensus 157 ~~lfGDGAaA~ll~~~~ 173 (329)
T PRK07204 157 CILFGDGAAAVVITKGD 173 (329)
T ss_pred eEEEecccEEEEEEEcC
Confidence 78999999999999754
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=126.82 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|+..... . ....+..++..+|
T Consensus 22 ~eLa~~A~~~AL~dAgi~~~---dID----~vi~g~~~~~~-------------------~------~~~~a~~v~~~lG 69 (385)
T PRK12578 22 QELAWESIKEALNDAGVSQT---DIE----LVVVGSTAYRG-------------------I------ELYPAPIVAEYSG 69 (385)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccc-------------------c------cCChHHHHHHHhC
Confidence 46899999999999999886 344 68888653110 0 0112566889999
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh--------------------------hHHhhh
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------------------------LGGFVA 368 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~--------------------------~~~f~~ 368 (470)
+.+ |.++|+++|+|++.||+.|++.|++|++|.+||+|+|.+..... +..+..
T Consensus 70 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a 149 (385)
T PRK12578 70 LTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYA 149 (385)
T ss_pred CCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHH
Confidence 976 67899999999999999999999999999999999997432100 000000
Q ss_pred cccc----------------cCCC--CCCCCCC----------------cCCCCCCCcceecceeEeEeeccchhHHhcC
Q 012130 369 CRAL----------------SQRN--NDPTKAS----------------RPWDINRDGFVMGEGAGVLLLEELEHAKKRG 414 (470)
Q Consensus 369 ~~~L----------------s~~~--~~~~~~~----------------rpFd~~adG~v~GEGagalvLe~l~~A~~~G 414 (470)
...+ ++.+ .+|.... .|+ .--|-..++||++++||.+.+.|++.|
T Consensus 150 ~~~m~~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl-~~~d~~~~~DGAaA~vl~s~e~A~~l~ 228 (385)
T PRK12578 150 TRHMAVYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPI-KLLDSCPISDGSATAIFASEEKVKELK 228 (385)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCc-cHhhcCCcCCCeEEEEEecHHHHHhcC
Confidence 0000 0000 1122111 111 112334468999999999999999888
Q ss_pred CeeeEEEEEEeeccCCCCCCC-cCcCc---hhHHHHHhh-------ccccEEEEeeeccee
Q 012130 415 AKIYAEFRGGSFTSDAYHMTE-PHPDG---KSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 415 ~~I~a~I~G~a~~~dg~~~t~-P~p~g---~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
.+.+++|+|++..+|..++.. |+..+ ......++. .||+++|.|..-|+.
T Consensus 229 ~~~~~~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~DiD~~ei~d~ft~~ 289 (385)
T PRK12578 229 IDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVHDAFTIA 289 (385)
T ss_pred CCCCeEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH
Confidence 667789999999988776543 22222 111222221 299999999987754
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=127.95 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHH-hCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 237 LYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 237 rl~L~aa~eALe-dAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
.|+.++.+++|+ ++|++++. ++ .||+|...... .....++..++...|
T Consensus 28 ~L~~~a~~~al~r~a~i~~~~---Id----~vi~G~~~~~~------------------------~~g~~~ar~~~l~~G 76 (400)
T PRK13359 28 DLGAVPLKALVERNPDVDWAA---ID----DVIYGCANQAG------------------------EDNRNVARMSLLLAG 76 (400)
T ss_pred HHHHHHHHHHHHhccCCCHHH---CC----EEEEEeccccc------------------------cccccHHHHHHHHcC
Confidence 477889999999 57998863 33 68999763110 001235677888999
Q ss_pred CCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 316 l~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
|.. |.++|+.+|+||+.||+.|++.|++|++|++||||+|.+..
T Consensus 77 l~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~ 122 (400)
T PRK13359 77 LPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSR 122 (400)
T ss_pred CCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCC
Confidence 964 99999999999999999999999999999999999998754
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=126.47 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|...... .+ .+ .+..++..+|
T Consensus 26 ~~L~~~a~~~al~dAgl~~~---~ID----~vv~g~~~~~~----------------------~~--~~-~~~~~~~~~G 73 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPA---LVQ----EVFFGNVLSAN----------------------LG--QA-PARQAALGAG 73 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCcCC----------------------cC--Cc-HHHHHHHhcC
Confidence 56889999999999999876 344 68888642100 00 01 2345778889
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+. -|.++|+++|+|++.||++|+++|++|++|++||+|+|.+
T Consensus 74 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~ 117 (394)
T PLN02644 74 LPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESM 117 (394)
T ss_pred CCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEec
Confidence 85 3788999999999999999999999999999999998865
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=127.63 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHH-hCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALe-dAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|+.++.+++|+ |+|++++ +++ .||+|..... +.....++..++...
T Consensus 26 ~~L~~~a~~~al~~~a~i~~~---~Id----~v~~G~~~~~------------------------~~~~~~~ar~~~~~~ 74 (400)
T TIGR02430 26 DDLAAVPIKALLARNPQLDWA---AID----DVIYGCANQA------------------------GEDNRNVARMAALLA 74 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HCC----EEEEEecccc------------------------ccccccHHHHHHHHc
Confidence 4588899999999 6899876 333 5899875310 010122456688999
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
|+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+..
T Consensus 75 Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~ 121 (400)
T TIGR02430 75 GLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSR 121 (400)
T ss_pred CCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccC
Confidence 996 599999999999999999999999999999999999998753
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=124.06 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|+.++ +++ .|++|+...+. . ....++..++..+|
T Consensus 28 ~eLa~~A~~~AL~~ag~~~~---dID----~vi~g~~~~~~---------------------~---~g~~~a~~~~~~lG 76 (391)
T PRK07661 28 DDLGALVVKETLKRAGNYEG---PID----DLIIGCAMPEA---------------------E---QGLNMARNIGALAG 76 (391)
T ss_pred HHHHHHHHHHHHHhcCCChh---HCC----EEEEEeccccc---------------------c---ccchHHHHHHHHcC
Confidence 46889999999999987654 333 58888653210 0 00123456888999
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+. -|.++|+++|+||+.|++.|++.|++|++|.+||+|+|.+.
T Consensus 77 l~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms 121 (391)
T PRK07661 77 LPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMS 121 (391)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecc
Confidence 97 49999999999999999999999999999999999999754
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-11 Score=124.28 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhC-CCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALedA-G~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|+.+++++||+|+ |++++ +++ +|++|..... ...+ ...+..++..+
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~---dID----~vv~g~~~~~---------------------~~~g---~~~~~~~a~~l 76 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPT---DID----DLMLGCGLPG---------------------GEQG---FNMARVVAVLL 76 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HCC----EEEEEccccc---------------------cccc---CCHHHHHHHHc
Confidence 568899999999997 99887 344 6888754210 0000 12356788999
Q ss_pred CCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 315 gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
|+.+ |.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+
T Consensus 77 Gl~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~ 120 (406)
T PRK07851 77 GYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETV 120 (406)
T ss_pred CCCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEec
Confidence 9975 889999999999999999999999999999999998863
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=124.44 Aligned_cols=193 Identities=20% Similarity=0.194 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHh-CCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALAD-GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALed-AG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|+.++.++||++ +|++++ +++ .||+|...... . ... .++..+....
T Consensus 26 ~~L~~~a~~~al~~~agl~~~---~Id----~v~~G~~~~~~----------------------~-~g~-~~ar~~~~~~ 74 (385)
T TIGR02445 26 EDLSAHLMSKLLARNPKVDPA---EVE----DIYWGCVQQTL----------------------E-QGF-NIARNAALLA 74 (385)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HcC----EEEEecccccc----------------------c-ccc-hHHHHHHHHC
Confidence 56889999999995 699887 334 68999652100 0 001 1344555566
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh-------------------hHHhh------
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------------------LGGFV------ 367 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~-------------------~~~f~------ 367 (470)
|+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+..... ..++.
T Consensus 75 g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 154 (385)
T TIGR02445 75 QIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEMLGK 154 (385)
T ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccCccccCCCcchhHHhhhccccchHHHHHHHHHH
Confidence 664 477999999999999999999999999999999999997642110 00000
Q ss_pred hccc----------ccCCC-----------C-----------------CCCCCCcC-------------CCCC------C
Q 012130 368 ACRA----------LSQRN-----------N-----------------DPTKASRP-------------WDIN------R 390 (470)
Q Consensus 368 ~~~~----------Ls~~~-----------~-----------------~~~~~~rp-------------Fd~~------a 390 (470)
+.+. .++.+ + +|+...|+ |+.. .
T Consensus 155 ~ygitre~~d~~A~~sh~~a~~a~~~g~f~nei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 234 (385)
T TIGR02445 155 MHGISREQQDAFAARSHARAHAATQEGKFKNEIIPTQGHDADGFLKQFDYDEVIRPETTVESLAALRPAFDPKNGTVTAG 234 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCceecCCCCceecc
Confidence 0000 00000 0 13333332 2210 1
Q ss_pred CcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCC--CcCcCchhHHHHHhh---ccccEEEEeee
Q 012130 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--EPHPDGKSAMSLRLN---FSVQMKSLNGF 460 (470)
Q Consensus 391 dG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t--~P~p~g~~~~~~~~~---~~i~~veahGt 460 (470)
|=--++||++++||++.+.|++.|++++++|+|++.+......+ .|.+..+.+ ..++- .+|+|+|+|-.
T Consensus 235 ~~~~~sDGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~~~~~~~~~~~a~~~a-l~~AGi~p~DId~~Ei~da 308 (385)
T TIGR02445 235 TSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKA-LKRAGLSISDIDVFELNEA 308 (385)
T ss_pred cCCCcCCceEEEEEecHHHHHHCCCCeeEEEEEEEEcCCCCcccchhHHHHHHHH-HHHcCCCHHHcCEEEEccc
Confidence 22236899999999999999999999999999999985432222 222211111 11111 29999999963
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=122.23 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHH-hCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALe-dAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|..+++++||+ |+|++++ +++ .|++|...... .....++..++...
T Consensus 28 ~~L~~~~~~~al~~~agl~~~---~Id----~vi~g~~~~~~------------------------~~g~~~ar~~~~~~ 76 (387)
T PRK08947 28 EDLSAHLMRSLLARNPALDPA---EID----DIIWGCVQQTL------------------------EQGFNIARNAALLA 76 (387)
T ss_pred HHHHHHHHHHHHHhccCcChH---HhC----eEEEEeccccc------------------------cccccHHHHHHHHc
Confidence 5688889999999 5899876 334 68888642100 00012344577888
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
|+. -|.++|+++|+||+.||..|+++|++|++|++||||+|.+.
T Consensus 77 Gl~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms 122 (387)
T PRK08947 77 GIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMG 122 (387)
T ss_pred CCCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccc
Confidence 886 47799999999999999999999999999999999999864
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-11 Score=122.21 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.++++++|+++|++++. ++ -|++|+...... .....+..++...|
T Consensus 29 ~dLa~~A~~~al~~agi~p~~---ID----~vi~G~~~~~~~------------------------~~~~~~r~a~~~~G 77 (402)
T PRK08242 29 VRLAAGLLEALRDRNGLDTAA---VD----DVVLGCVTPVGD------------------------QGADIARTAVLAAG 77 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHH---cC----EEEEEecCCCcc------------------------ccccHHHHHHHHcC
Confidence 357888999999999998863 33 588887642110 01223444556778
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhh----------hHH----hhhccc-------
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG----------LGG----FVACRA------- 371 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~----------~~~----f~~~~~------- 371 (470)
+ +-|.++|+.+|+|++.||+.|+++|++|++|.+||||+|.+.. |.. +.. +..++.
T Consensus 78 l~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~mg~~Ae~~a~ 157 (402)
T PRK08242 78 LPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAWAMDPSTNFPTYFVPQGISADLIAT 157 (402)
T ss_pred CCCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCcccccCcccccCcccccccccCCHHHHHHHHHH
Confidence 8 3589999999999999999999999999999999999998653 210 000 000010
Q ss_pred ---c-----------cCCC-------------------------CCCCCCCc-------------CCCCCC--Cc-----
Q 012130 372 ---L-----------SQRN-------------------------NDPTKASR-------------PWDINR--DG----- 392 (470)
Q Consensus 372 ---L-----------s~~~-------------------------~~~~~~~r-------------pFd~~a--dG----- 392 (470)
+ |+.+ .+++...| .|+... +|
T Consensus 158 ~~gisRe~~d~~A~~Sh~~A~~A~~~g~f~~ei~pv~~~~~~~~~~~de~~r~~~t~e~l~~l~p~f~~~~~~~g~~~~~ 237 (402)
T PRK08242 158 KYGFSREDVDAYAVESQQRAAAAWAEGYFAKSVVPVKDQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAVA 237 (402)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeecCCCCEeeCCCCCCCCCCCHHHHhCCCCCccCccccCcccccc
Confidence 0 0000 02233222 244321 23
Q ss_pred -------------------ceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCC--CCCcCcCchhHHHHHhh--
Q 012130 393 -------------------FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH--MTEPHPDGKSAMSLRLN-- 449 (470)
Q Consensus 393 -------------------~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~--~t~P~p~g~~~~~~~~~-- 449 (470)
-.+.||++++||++.+.|+++|.+++++|.|++...+... .+.|.+-.+.++ .++-
T Consensus 238 ~~~~~~~~~~~~~vTagn~s~~~DGAaAlvl~s~e~A~~~g~~p~a~I~g~~~~~~~~~~~~~~~~~a~~~al-~~AGl~ 316 (402)
T PRK08242 238 LQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSDPTIMLTGPVPATRKAL-AKAGLT 316 (402)
T ss_pred cccccccccccCceecCcCCCCCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCchhhcccHHHHHHHHH-HHcCCC
Confidence 1578999999999999999999999999999999876532 344433222111 1111
Q ss_pred -ccccEEEEeee
Q 012130 450 -FSVQMKSLNGF 460 (470)
Q Consensus 450 -~~i~~veahGt 460 (470)
-||+++|.|--
T Consensus 317 ~~DID~~ei~da 328 (402)
T PRK08242 317 VDDIDLFELNEA 328 (402)
T ss_pred HHHCCEEEecch
Confidence 29999999863
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=123.08 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhC-CCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALedA-G~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|+.+++++||+++ |++++ +++ .||+|+...+. . .....+..+....
T Consensus 32 ~eLa~~A~~~AL~~a~gl~~~---dID----~vi~g~~~~~~---------------------~---~~~~~ar~~~~~~ 80 (399)
T PRK09052 32 DDLLAHVLRSAVAQVPGLDPK---LIE----DAIVGCAMPEA---------------------E---QGLNVARIGALLA 80 (399)
T ss_pred HHHHHHHHHHHHHhccCcCHH---HCC----EEEEEecCCCC---------------------C---CCchHHHHHHHHc
Confidence 568899999999997 99886 344 68999764211 0 0111222345556
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
|+. -|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.
T Consensus 81 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS 126 (399)
T PRK09052 81 GLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMS 126 (399)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccc
Confidence 885 47999999999999999999999999999999999999764
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=122.59 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|+....+. .....+..++.++|
T Consensus 72 ~eLa~eA~~~AL~dAgl~~~---dID----~vv~G~~~~~~~------------------------~~~~~~r~~a~~~G 120 (452)
T PLN02287 72 DDLLAPVLKAVVEKTGLNPS---EVG----DIVVGTVLAPGS------------------------QRANECRMAAFYAG 120 (452)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeecCccc------------------------ccchHHHHHHHHCC
Confidence 56889999999999999876 344 688887632210 01112345667789
Q ss_pred CCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+.. |.++|+++|+|++.||+.|+++|++|++|++||+|+|.+.
T Consensus 121 l~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS 165 (452)
T PLN02287 121 FPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMT 165 (452)
T ss_pred CCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecC
Confidence 974 8899999999999999999999999999999999999753
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=120.26 Aligned_cols=90 Identities=22% Similarity=0.343 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|+|++++ +++ +|++|+..... . ....+..+....|
T Consensus 27 ~~La~~A~~~AL~dAgl~~~---dID----~vi~g~~~~~~----------------------~---~~~~~~~~~~~~g 74 (393)
T PRK05790 27 VELGAIVIKAALERAGVPPE---QVD----EVIMGQVLQAG----------------------A---GQNPARQAALKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----eEEEEEecCCC----------------------C---CCcHHHHHHHHcC
Confidence 56889999999999999987 444 68888753200 0 0012233555677
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+. -|.++|+.+|+|++.||..|+++|++|.+|.+||+|+|.+
T Consensus 75 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~ 118 (393)
T PRK05790 75 LPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESM 118 (393)
T ss_pred CCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeecc
Confidence 75 4899999999999999999999999999999999999974
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=116.99 Aligned_cols=168 Identities=21% Similarity=0.277 Sum_probs=113.7
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.+.|.++|..+|.- .+.+++.+.+......+. ++ .++ ....+..+. .....|+.++++
T Consensus 2 ~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~--~~---~gi-----------~~r~~~~~~-----~~~~~la~~A~~ 60 (318)
T TIGR00747 2 YAGILGTGSYLPEKVLTNADLEKMVDTSDEWIV--TR---TGI-----------KERRIAADD-----ETSSTMGFEAAK 60 (318)
T ss_pred CCEEEEEEEECCCceecHHHHHHhcCCchHHee--cc---cCc-----------eEEEECCCC-----CCHHHHHHHHHH
Confidence 37899999999998 677887775432110000 00 000 000010111 123678999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~tV 323 (470)
+||+++|++++ +++ .|++++...++ .....+.+++..+|+++ |.+.|
T Consensus 61 ~al~~agl~~~---~Id----~~i~~~~~~~~-------------------------~~~~~a~~l~~~lGl~~~~~~~v 108 (318)
T TIGR00747 61 RAIENAGISKD---DID----LIIVATTTPDH-------------------------AFPSAACMVQAYLGIKGIPAFDL 108 (318)
T ss_pred HHHHHcCCCHH---HCC----EEEEECCCCCC-------------------------CCChHHHHHHHHhCCCCCcEeeh
Confidence 99999999876 333 56676653211 01123678999999998 89999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
..+|+|++.||+.|+++|++|.++.+||+|+|..... + ++.+ ....+++|||++++|
T Consensus 109 ~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~-----------~-----------~~~~-~~~~~~~GDGAaA~l 165 (318)
T TIGR00747 109 SAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSST-----------L-----------DWTD-RGTCVLFGDGAGAVV 165 (318)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCc-----------C-----------CcCC-CCeEEEEecceeEEE
Confidence 9999999999999999999999999999999973211 1 1111 223578999999999
Q ss_pred eccchh
Q 012130 404 LEELEH 409 (470)
Q Consensus 404 Le~l~~ 409 (470)
|++.+.
T Consensus 166 L~~~~~ 171 (318)
T TIGR00747 166 LGESED 171 (318)
T ss_pred EeecCC
Confidence 997544
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=120.73 Aligned_cols=91 Identities=21% Similarity=0.358 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .|++|+..+.+. ...++..++..+|
T Consensus 27 ~eLa~~A~~~AL~~agl~~~---dID----~vv~g~~~~~~~-------------------------~~~~a~~va~~~G 74 (404)
T PRK06205 27 EELAATVIRALVERTGIDPA---RID----DVIFGQGYPNGE-------------------------APAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCCC-------------------------CChHHHHHHHHcC
Confidence 45889999999999999886 344 688887642110 1123456888899
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+. -|.++|+++|+|++.||+.|+++|++|.+|.+||+|+|.+.
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms 119 (404)
T PRK06205 75 LPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMS 119 (404)
T ss_pred CCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhc
Confidence 86 48999999999999999999999999999999999998753
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.2e-11 Score=122.16 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .||+|+..... .+ ..++..++..+|
T Consensus 27 ~eLa~~A~~~aL~~agl~~~---dID----~vi~g~~~~~~----------------------~~---~~~~~~~~~~~G 74 (393)
T PRK08235 27 TELGGIAIKEALERANVSAE---DVE----EVIMGTVLQGG----------------------QG---QIPSRQAARAAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccCC----------------------CC---CCHHHHHHHHcC
Confidence 45889999999999999886 333 68888763210 00 123445678889
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
+. -|.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~ 120 (393)
T PRK08235 75 IPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSN 120 (393)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeecccc
Confidence 84 589999999999999999999999999999999999997643
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-11 Score=122.44 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHH-hCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALe-dAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|+.++.+++|+ |+|++++ +++ .|++|+.... +.....++..++...
T Consensus 27 ~~L~~~a~~~al~~~agi~~~---~Id----~v~~G~~~~~------------------------~~~~~~~ar~~~~~~ 75 (401)
T PRK09050 27 DDLGAVPLKALMARNPGVDWE---AVD----DVIYGCANQA------------------------GEDNRNVARMSALLA 75 (401)
T ss_pred HHHHHHHHHHHHHhccCCCHH---HCC----EEEEEecccc------------------------ccccchHHHHHHHHc
Confidence 4588899999999 6899876 333 5899875310 111122455688899
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
|+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+.
T Consensus 76 Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS 121 (401)
T PRK09050 76 GLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMS 121 (401)
T ss_pred CCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccc
Confidence 993 59999999999999999999999999999999999999864
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=120.96 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.++..+||+|+|++++ +++ .||+|+...+.. . ..+ ++..++...|
T Consensus 27 ~eL~~~a~~~al~~agi~~~---~Id----~v~~G~~~~~~~---------------------~--~~~-~ar~~~~~~G 75 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGD---DIE----DVILGCTNQAGE---------------------D--SRN-VARNALLLAG 75 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccccc---------------------c--ccc-HHHHHHHhcC
Confidence 46889999999999999886 344 689997632110 0 012 2445777888
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+.
T Consensus 76 lp~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms 120 (401)
T PRK08131 76 LPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMS 120 (401)
T ss_pred CCCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCC
Confidence 85 68999999999999999999999999999999999999764
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=119.62 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .|++|+...++.. +. ... ....+...++
T Consensus 33 ~~L~~~a~~~AL~~agl~~~---dID----~vi~g~~~~~~~~--------------------~~-~~~-~~~~l~a~~~ 83 (394)
T PRK06445 33 EELAAMLINRLIEKTGIKPE---EID----DIITGCALQVGEN--------------------WL-YGG-RHPIFLARLP 83 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----eeEEEeecCCCcc--------------------cc-cHH-HHHHHHcCCC
Confidence 46889999999999999987 444 6888876432110 00 000 0111222334
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
.+-|+++|+++|+|++.||+.|+++|++|.+|.+||+|+|.+.
T Consensus 84 ~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms 126 (394)
T PRK06445 84 YNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMT 126 (394)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccc
Confidence 4568999999999999999999999999999999999999543
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=120.39 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ .++ .||+|..... .. ...++..++...|
T Consensus 30 ~eL~~~a~~~al~~agl~~~---~ID----~vi~G~~~~~----------------------~~---~~~~ar~~a~~aG 77 (428)
T PRK08963 30 VDLGKMVVGELLARSEIDPE---LIE----QLVFGQVVQM----------------------PE---APNIAREIVLGTG 77 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccCCC----------------------CC---ccHHHHHHHHHCC
Confidence 45889999999999999886 333 6899875310 00 1223556889999
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+..
T Consensus 78 l~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~ 123 (428)
T PRK08963 78 MNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSV 123 (428)
T ss_pred CCCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCC
Confidence 95 599999999999999999999999999999999999997653
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=118.61 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++++||+|+|++++ +++ ++++|+..++.. . ...+...+
T Consensus 22 ~~~La~~A~~~Al~dAGl~~~---dID----~~~~g~~~~~~~---------------------~-------~~~~~~~l 66 (391)
T PRK08256 22 YPDMAAEAGRAALADAGIDYD---AVQ----QAYVGYVYGDST---------------------S-------GQRALYEV 66 (391)
T ss_pred HHHHHHHHHHHHHHHcCCChH---HCC----eeEEEEEeCCcc---------------------h-------hHHHHHHc
Confidence 457999999999999999876 444 355554322110 0 01245578
Q ss_pred CCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 315 gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
|++| |.++|+++|+|++.||..|+++|++|++|.+||+|++.+
T Consensus 67 Gl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~ 110 (391)
T PRK08256 67 GMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQM 110 (391)
T ss_pred CCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeec
Confidence 9998 999999999999999999999999999999999999975
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=119.78 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.++++++|+|+|++++ +++ .|++|..... +.....++..++...|
T Consensus 27 ~eL~~~a~~~aL~~agi~~~---~Id----~v~~G~~~~~------------------------~~q~~~~ar~~~l~~G 75 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDPG---DVE----QVIGGCVTQA------------------------GEQSNNITRTAWLHAG 75 (387)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccc------------------------ccccchHHHHHHHhCC
Confidence 45889999999999999886 333 5888865210 0000113445666688
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
+. -|.++|+++|+||+.||+.|++.|++|++|++||||+|.+..
T Consensus 76 l~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~ 121 (387)
T PRK07850 76 LPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSR 121 (387)
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCC
Confidence 85 489999999999999999999999999999999999998743
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-10 Score=117.53 Aligned_cols=197 Identities=21% Similarity=0.316 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|+..+++.. .. .. .+..+...++
T Consensus 23 ~eL~~eA~~~AL~dAgl~~~---dId----~vi~g~~~~~~~~----------------~~-~~------~~~~~~~~~g 72 (389)
T PRK07516 23 ESLIVRVAREALAHAGIAAG---DVD----GIFLGHFNAGFSP----------------QD-FP------ASLVLQADPA 72 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEecCCccc----------------cc-cc------hhHHHHHhcC
Confidence 46899999999999999876 333 7888876422210 00 00 0111233446
Q ss_pred CC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh-h-H-----------------Hhh-hccc---
Q 012130 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-L-G-----------------GFV-ACRA--- 371 (470)
Q Consensus 316 l~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~-~-~-----------------~f~-~~~~--- 371 (470)
++ .|.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..... . . .|. .+++
T Consensus 73 l~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 152 (389)
T PRK07516 73 LRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQ 152 (389)
T ss_pred CCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHH
Confidence 64 588999999999999999999999999999999999997532100 0 0 000 0000
Q ss_pred -------c-----------cCCC--CCCCCC-CcCCCC------------------CCCcceecceeEeEeeccchhHHh
Q 012130 372 -------L-----------SQRN--NDPTKA-SRPWDI------------------NRDGFVMGEGAGVLLLEELEHAKK 412 (470)
Q Consensus 372 -------L-----------s~~~--~~~~~~-~rpFd~------------------~adG~v~GEGagalvLe~l~~A~~ 412 (470)
+ ++.| .+|... -+|++. ..|--.++||++++||.+++.|++
T Consensus 153 ~y~~~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~~~d~~~~~DGAaa~il~s~~~a~~ 232 (389)
T PRK07516 153 AYFQRYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLRRTDCSLVSDGAAALVLADAETARA 232 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCchhhcCCcCcceEEEEEecHHHHHh
Confidence 0 0000 112111 012221 123334689999999999999988
Q ss_pred cCCeeeEEEEEEeeccCCCCCCCcCcC---chhHHHHHhh-------ccccEEEEeeeccee
Q 012130 413 RGAKIYAEFRGGSFTSDAYHMTEPHPD---GKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 413 ~G~~I~a~I~G~a~~~dg~~~t~P~p~---g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
.+. +++|+|++..+|..+++..++. +......+++ .||+++|+|...|+.
T Consensus 233 ~~~--~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~agl~~~did~~e~~d~f~~~ 292 (389)
T PRK07516 233 LQR--AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQAGVTLDDLSFVETHDCFTIA 292 (389)
T ss_pred cCC--CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCHH
Confidence 854 5689999999887766544432 2222222222 299999999988765
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=114.63 Aligned_cols=189 Identities=18% Similarity=0.201 Sum_probs=122.4
Q ss_pred CCcEEEEeecccCCCC-CCHHHHHHHHHcCC--CcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGV--SGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~--s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L 240 (470)
.+.|.|+|+|...|.- .+.+++.+.+.+.- ..+.+ . .+ .+..|. . ...|..+.+ ....|+.
T Consensus 3 ~~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~--~----~i-~~~~Gi-~---~R~~~~~~~-----~~~~la~ 66 (338)
T PRK09258 3 YSNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPP--G----QL-EALTGI-R---ERRWWPEGT-----QLSDGAI 66 (338)
T ss_pred ccceEEEEEEecCCCccCcHHHHHHHhhhcccccCCCh--h----Hh-hhhcCc-e---eEecCCCCC-----CHHHHHH
Confidence 3568999999999998 56677766543311 11100 0 00 000000 0 000111111 1357999
Q ss_pred HHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC--
Q 012130 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-- 318 (470)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-- 318 (470)
+++++||+++|+.++ +++ .|++++...++ .. ...+..+...+|+..
T Consensus 67 ~Aa~~aL~~ag~~~~---~Id----~li~~s~~~~~--------------------~~-----p~~a~~v~~~lgl~~~~ 114 (338)
T PRK09258 67 AAGRKALAEAGIDPS---DIG----LLINTSVCRDY--------------------LE-----PATACRVHHNLGLPKSC 114 (338)
T ss_pred HHHHHHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CC-----ChHHHHHHHHcCCCCCC
Confidence 999999999999876 333 46666642111 11 125678999999964
Q ss_pred cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecce
Q 012130 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 319 ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEG 398 (470)
+.+.|.++|+|++.||+.|.++|++|.++.+||.++|.. +...-..+. .+.. +...+.+|+....++..|||
T Consensus 115 ~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~-s~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~GDG 186 (338)
T PRK09258 115 ANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESA-REIVEATID--RLLA-----PETTREDFAQSFATLTLGSG 186 (338)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEeccc-chhccchhh--hhcc-----CccchhhhhhccceEEeccc
Confidence 789999999999999999999999999999999999973 332111111 1111 22223678887888999999
Q ss_pred eEeEeeccch
Q 012130 399 AGVLLLEELE 408 (470)
Q Consensus 399 agalvLe~l~ 408 (470)
|+++||++.+
T Consensus 187 A~A~ll~~~~ 196 (338)
T PRK09258 187 AAAAVLTRGS 196 (338)
T ss_pred ceEEEEecCC
Confidence 9999999744
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-10 Score=118.45 Aligned_cols=90 Identities=27% Similarity=0.439 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +||+|+.... + . . ...+..++..+|
T Consensus 28 ~~L~~~A~~~Al~dAgl~~~---dID----~vi~g~~~~~-------------------~----~-~-~~~a~~v~~~lG 75 (426)
T PRK08170 28 SDLAVAAGRALLNRQPFAPD---DLD----EVILGCAMPS-------------------P----D-E-ANIARVVALRLG 75 (426)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCC-------------------C----C-c-ChHHHHHHHHhC
Confidence 56889999999999999886 344 7888865310 0 0 0 123566888999
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+. -|.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+
T Consensus 76 l~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~m 119 (426)
T PRK08170 76 CGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAM 119 (426)
T ss_pred cCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEecc
Confidence 95 4999999999999999999999999999999999999964
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=118.88 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .|++|+....+. ..+ ++...+...|
T Consensus 32 ~eL~~~a~~~aL~~Agi~~~---dID----~vi~G~~~~~~~------------------------~~~-~~~~~~l~ag 79 (397)
T PRK06954 32 PQLGAAAIAAAVERAGLKPE---QID----EVVMGCVLPAGQ------------------------GQA-PARQAALGAG 79 (397)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEEecCCCcc------------------------chH-HHHHHHHcCC
Confidence 56889999999999999887 333 588887532110 011 2223334445
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+ +-|.++|+.+|+||+.||+.|+++|++|++|.+||+|+|.+.
T Consensus 80 ~~~~~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms 124 (397)
T PRK06954 80 LPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMT 124 (397)
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccC
Confidence 5 357899999999999999999999999999999999999865
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-10 Score=116.82 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|+|++++ +++ +|++|..... . ... ..++..+....|
T Consensus 27 ~~L~~~a~~~al~dagl~~~---~ID----~vv~g~~~~~------------------~-----~~~-~~~~~~~~l~~g 75 (382)
T PRK07801 27 ADLGAHVLKGLVDRTGIDPA---AVD----DVIFGCVDTI------------------G-----PQA-GNIARTSWLAAG 75 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEEeeccC------------------C-----ccc-ccHHHHHHHHcC
Confidence 45889999999999999886 334 6888753100 0 000 001222222344
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+ ..|.++|+++|+|++.||+.|+++|++|++|++||+|++.+
T Consensus 76 l~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~m 119 (382)
T PRK07801 76 LPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNM 119 (382)
T ss_pred CCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhh
Confidence 4 46899999999999999999999999999999999999965
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=117.42 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|...... ....++..++..+|
T Consensus 27 ~~L~~~a~~~al~dagi~~~---dID----~vi~g~~~~~~-------------------------~~~~~a~~~~~~~G 74 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKLDPA---LVQ----EVIMGNVIQAG-------------------------VGQNPAGQAAYHAG 74 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCC-------------------------ccCcHHHHHHHHCC
Confidence 46889999999999999987 344 78888653110 00112456788899
Q ss_pred CCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+.. |.++|+++|+||+.||..|+++|++|++|++||||+|.+.
T Consensus 75 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms 119 (388)
T PRK06366 75 LPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMS 119 (388)
T ss_pred CCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccc
Confidence 964 9999999999999999999999999999999999998754
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=113.53 Aligned_cols=167 Identities=24% Similarity=0.373 Sum_probs=114.2
Q ss_pred EEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012130 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (470)
Q Consensus 167 VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~e 245 (470)
+.|+|+|...|.- .+.+++.+.+ |.. .+ .+... .| +....+..+. .....|+.+++++
T Consensus 2 ~~I~~i~~~lP~~~~~~~~~~~~~--~~~-----~~----~~~~~-~G----i~~r~~~~~~-----~~~~~la~~A~~~ 60 (320)
T cd00830 2 ARILGIGSYLPERVVTNDELEKRL--DTS-----DE----WIRTR-TG----IRERRIADPG-----ETTSDLAVEAAKK 60 (320)
T ss_pred CEEEEEEEECCCcEEcHHHHHHHc--CCC-----HH----Hhhhc-cC----ceEEeeCCCC-----CCHHHHHHHHHHH
Confidence 6799999999998 5777776665 211 00 00000 00 0000111111 2347799999999
Q ss_pred HHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC-CCcceeec
Q 012130 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW-MGPNYSIS 324 (470)
Q Consensus 246 ALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl-~Gps~tV~ 324 (470)
||+++|++++ +++ .+++++...++ . ....+.+++..+|+ ..|.+.|+
T Consensus 61 al~~ag~~~~---~Id----~li~~~~~~~~--------------------~-----~~~~~~~l~~~lg~~~~~~~~v~ 108 (320)
T cd00830 61 ALEDAGIDAD---DID----LIIVATSTPDY--------------------L-----FPATACLVQARLGAKNAAAFDIN 108 (320)
T ss_pred HHHHcCCCHH---HCC----EEEEEcCCCCC--------------------C-----CCcHHHHHHHHhCCCCCcEeecc
Confidence 9999999876 333 46666653211 0 11246789999999 66889999
Q ss_pred CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEee
Q 012130 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (470)
Q Consensus 325 tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalvL 404 (470)
.+|+|++.||+.|.++|++|.++.+||+++|.+. .. + -|+....++++|||++++||
T Consensus 109 ~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s-~~----------~------------~~~~~~~~~~~GDgAaA~ll 165 (320)
T cd00830 109 AACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLS-RI----------L------------DWTDRSTAVLFGDGAGAVVL 165 (320)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhc-cc----------c------------CcccCCceEEEeccceEEEE
Confidence 9999999999999999999999999999999722 11 0 13444578999999999999
Q ss_pred ccchh
Q 012130 405 EELEH 409 (470)
Q Consensus 405 e~l~~ 409 (470)
++.+.
T Consensus 166 ~~~~~ 170 (320)
T cd00830 166 EATEE 170 (320)
T ss_pred EecCC
Confidence 97543
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=112.16 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=114.2
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|-|+++|...|.- .+.+++.+.+. ...+.. ..+...+ .|..+ . .....|+.++++
T Consensus 1 ~v~I~~i~~~lP~~~v~~~~~~~~~~--~~~~~~-----~~gi~~r-----------~~~~~----~-~~~~~l~~~a~~ 57 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGLG--VDPGKY-----TTGIGQR-----------HMAGD----D-EDVPTMAVEAAR 57 (324)
T ss_pred CccEEEEEecCCceeecHHHHHHHhC--CCccee-----eeeccee-----------EecCC----C-CCHHHHHHHHHH
Confidence 36799999999988 67777765532 110000 0000000 01001 1 224678999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC-CCcceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW-MGPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl-~Gps~tV 323 (470)
+||+++|++++ +++ .|++|+..... . ....+.+|+..+|+ ..|.+.|
T Consensus 58 ~aL~~ag~~~~---~Id----~li~~~~~~~~--------------------~-----~~~~~~~i~~~lg~~~~~~~~v 105 (324)
T cd00827 58 RALERAGIDPD---DIG----LLIVATESPID--------------------K-----GKSAATYLAELLGLTNAEAFDL 105 (324)
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------C-----CccHHHHHHHHcCCCCCceeeh
Confidence 99999999876 333 57777653211 0 11246789999999 5789999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+.+|+|++.||..|+++|++|.++.+||+|+|.+.... .+.+.+++++|||++++|
T Consensus 106 ~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~------------------------~~~~~~~~~~gdgaaA~l 161 (324)
T cd00827 106 KQACYGGTAALQLAANLVESGPWRYALVVASDIASYLL------------------------DEGSALEPTLGDGAAAML 161 (324)
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc------------------------cCCCCccccccCceEEEE
Confidence 99999999999999999999999999999999732111 034568899999999999
Q ss_pred eccchh
Q 012130 404 LEELEH 409 (470)
Q Consensus 404 Le~l~~ 409 (470)
|++.+.
T Consensus 162 l~~~~~ 167 (324)
T cd00827 162 VSRNPG 167 (324)
T ss_pred EecCcc
Confidence 997554
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-09 Score=112.21 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ +|++|+....+. .. .....++..+|
T Consensus 28 ~~L~~ea~~~AL~dagl~~~---dID----~v~vg~~~~~~~---------------------~~----~~~~~~a~~lG 75 (398)
T PRK06157 28 EDLMVEAFLEALADAGIEPK---DID----AAWFGTHYDEIG---------------------SG----KSGTPLSRALR 75 (398)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccccc---------------------cc----chhHHHHHHcC
Confidence 46889999999999999986 344 688886531110 00 01134677899
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+.+ |.++|+++|+|++.||++|+++|++|++|.+||+|+|.+
T Consensus 76 l~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~ 118 (398)
T PRK06157 76 LPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKL 118 (398)
T ss_pred CCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeec
Confidence 976 788999999999999999999999999999999999974
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=110.97 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=111.7
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.+.|.|+|...|.- .+.+++.+........+. +..+... ..+..+. .....|+.+++.
T Consensus 4 ~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~-----~~~Gi~~-----------r~~~~~~-----~~~~~la~~A~~ 62 (325)
T PRK12879 4 YARITGIGTYVPPRVLTNDDLETFIDTSDEWIV-----QRTGIKE-----------RRIAHVE-----EYTSDLAIKAAE 62 (325)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhh-----hccCceE-----------EEECCCC-----CCHHHHHHHHHH
Confidence 58899999999998 577777654311000000 0000000 0001111 124678999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-Ccceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-Gps~tV 323 (470)
+||+++|++++ +++ .|++++...++ .....+.+++..+|++ .+.+.|
T Consensus 63 ~al~~ag~~~~---~Id----~li~~~~~~~~-------------------------~~~~~a~~l~~~lg~~~~~~~~v 110 (325)
T PRK12879 63 RALARAGLDAE---DID----LIIVATTTPDY-------------------------LFPSTASQVQARLGIPNAAAFDI 110 (325)
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCChHHHHHHHHhCCCCCcEEEE
Confidence 99999999876 332 46666543211 0112467899999997 588999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+.+|+|++.||+.|.++|++|.++.+||+++|.+.. . + .++....++++|||++++|
T Consensus 111 ~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~-~----------~------------~~~~~~~~~~~GDgAaA~l 167 (325)
T PRK12879 111 NAACAGFLYGLETANGLITSGLYKKVLVIGAERLSK-V----------T------------DYTDRTTCILFGDGAGAVV 167 (325)
T ss_pred CccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcC-c----------C------------CccccCceEEEeecceEEE
Confidence 999999999999999999999999999999997211 0 0 0111224578999999999
Q ss_pred eccchh
Q 012130 404 LEELEH 409 (470)
Q Consensus 404 Le~l~~ 409 (470)
|++.++
T Consensus 168 l~~~~~ 173 (325)
T PRK12879 168 LEATEN 173 (325)
T ss_pred EEecCC
Confidence 997543
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-10 Score=114.78 Aligned_cols=92 Identities=28% Similarity=0.414 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ .|++|+.... . . .....+..++..+|
T Consensus 24 ~~La~~A~~~Al~dAgl~~~---dId----~vi~~~~~~~-------------------~--~---~~~~~a~~va~~lG 72 (399)
T PRK06059 24 VEYGVVAARAALADAGLDWR---DVQ----LVVGADTIRN-------------------G--Y---PGFVAGATFAQALG 72 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCC-------------------c--c---CCccHHHHHHHHhC
Confidence 56889999999999999875 333 4555653210 0 0 01123567899999
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+++ |.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.
T Consensus 73 ~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s 116 (399)
T PRK06059 73 WNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTP 116 (399)
T ss_pred CCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccC
Confidence 988 8999999999999999999999999999999999999754
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=112.12 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++. ++ .|++|...+. .....++..++...|
T Consensus 32 ~~L~~~a~~~al~~agl~~~~---Id----~vi~G~~~~~-------------------------~~~~~~ar~~~l~aG 79 (430)
T TIGR02446 32 VDLGKMVVSELLARSEIDPKL---IE----QLVFGQVVQM-------------------------PEAPNIAREIVLGTG 79 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHH---CC----EEEEEeccCc-------------------------CccchHHHHHHHhCC
Confidence 468899999999999998863 33 5888865310 001224556666678
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+. -|.++|+++|+||+.|++.|+++|++|++|++||||+|.+.
T Consensus 80 l~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS 124 (430)
T TIGR02446 80 MNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSS 124 (430)
T ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEccc
Confidence 86 38999999999999999999999999999999999999874
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-09 Score=109.11 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=110.4
Q ss_pred CCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~a 242 (470)
+..+.|+|+|...|.- .+.+++-+.+......|.+ ..++.. ..+..+. .....|+.++
T Consensus 45 ~~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~-----~tGi~~-----------R~~~~~~-----~~~~~La~~A 103 (379)
T PLN02326 45 GSGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIAT-----RTGIRN-----------RRVLSGD-----ETLTSLAVEA 103 (379)
T ss_pred cCCcEEEEEEEECCCceecHHHHHHhcCCchhheec-----ccCcce-----------EeecCCC-----CCHHHHHHHH
Confidence 3578999999999998 5666665433211000100 001100 0011111 1346799999
Q ss_pred HHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cce
Q 012130 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (470)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~ 321 (470)
+.+||+++|++++ +++ -|++++..+.+ .. ..+..+...+|+++ +.+
T Consensus 104 a~~aL~~agi~~~---dId----~li~~s~~~~~---------------------~~-----~~a~~v~~~LG~~~~~~~ 150 (379)
T PLN02326 104 AKKALEMAGVDPE---DVD----LVLLCTSSPDD---------------------LF-----GSAPQVQAALGCTNALAF 150 (379)
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEeCCCCc---------------------cC-----cHHHHHHHHhCCCCCcee
Confidence 9999999999875 222 35555542110 11 12567889999975 678
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
.|..+|++++.||+.|.++|++|.++.+||+|+|.+. .. + .|+...+.+++|||+++
T Consensus 151 dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~s-~~----------~------------~~~d~~~~~lfGDGAaA 207 (379)
T PLN02326 151 DLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALS-RY----------V------------DWTDRGTCILFGDGAGA 207 (379)
T ss_pred eccccchHHHHHHHHHHHHHHcCCCCEEEEEEechhc-CC----------C------------CccccCceEEEcceeEE
Confidence 9999999999999999999999999999999999721 00 1 12223456799999999
Q ss_pred Eeeccch
Q 012130 402 LLLEELE 408 (470)
Q Consensus 402 lvLe~l~ 408 (470)
+||++.+
T Consensus 208 vlL~~~~ 214 (379)
T PLN02326 208 VVLQACD 214 (379)
T ss_pred EEEEEcC
Confidence 9999743
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=110.27 Aligned_cols=187 Identities=20% Similarity=0.220 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|||++++ +++ ++++++... . + ....++..+|
T Consensus 29 ~eL~~eA~~~Al~dAgl~~~---dID----~iv~~~~~~--------------------~--~-------~~~~la~~lG 72 (384)
T PRK06158 29 MELLAQAAHRALADAGLTMA---DVD----GLFTASPDD--------------------A--L-------WGLSVAEYLG 72 (384)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEecCCC--------------------C--C-------cHHHHHHHcC
Confidence 46899999999999999876 344 677765310 0 1 1235888899
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEe-eecCCcc---------------h------hhhHHhh-----
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCG-GSDAAVI---------------P------IGLGGFV----- 367 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvG-Gvd~~l~---------------p------~~~~~f~----- 367 (470)
+++ |.+.+.++|+|+..+|+.|++.|++|.+|.+||. |.+.+.. | ..++++.
T Consensus 73 l~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ym 152 (384)
T PRK06158 73 IRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAARHM 152 (384)
T ss_pred CCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHHHH
Confidence 965 6778889999999999999999999999999975 6653211 0 0000000
Q ss_pred -hcc-------cc---cCCC--CCCCC----------------CCcCCCCCCCcceecceeEeEeeccchhHHhcCCeee
Q 012130 368 -ACR-------AL---SQRN--NDPTK----------------ASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIY 418 (470)
Q Consensus 368 -~~~-------~L---s~~~--~~~~~----------------~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~ 418 (470)
+-| .+ ++.| .+|.. .+.|+.. .|...++||++++||.+.+.|++.++++
T Consensus 153 ~~yG~t~e~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~~-~d~~~~~DGAaAvVL~s~e~A~~l~~~~- 230 (384)
T PRK06158 153 HQYGTTREQLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLSV-RDCCLVTDGAGAVVMVRADRARDLPRPP- 230 (384)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCch-hhcCCccCCeEEEEEecHHHHhhcCCCc-
Confidence 000 00 0000 11211 1233332 4666789999999999999998876553
Q ss_pred EEEEEEeeccCCCCCC-CcCc--CchhHHHHHhh-------ccccEEEEeee
Q 012130 419 AEFRGGSFTSDAYHMT-EPHP--DGKSAMSLRLN-------FSVQMKSLNGF 460 (470)
Q Consensus 419 a~I~G~a~~~dg~~~t-~P~p--~g~~~~~~~~~-------~~i~~veahGt 460 (470)
..|+|++..++..++. .|+. .+......+++ .||+++|.|--
T Consensus 231 v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~~AGi~p~DId~~ElyD~ 282 (384)
T PRK06158 231 VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFAMAGLTPADIDVVELYDA 282 (384)
T ss_pred EEEEEEEEecCCcccccccchhhhHHHHHHHHHHHHcCCCHHHCcEEEecCC
Confidence 5688888877765433 2222 22222222222 29999999964
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-10 Score=109.39 Aligned_cols=94 Identities=27% Similarity=0.292 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++.++|++++++++.++ .|++|+..+... ...++..++...
T Consensus 26 ~~~L~~~a~~~al~~~~i~~~~Id-------~v~~G~~~~~~~-------------------------g~~~ar~~~l~a 73 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGIDPEDID-------AVIVGNVLQEGE-------------------------GQNIARQAALAA 73 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHGGGEE-------EEEEE-SSSCTT-------------------------TCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhhh-------hcCccccccccc-------------------------chhhhhhhhhhc
Confidence 356889999999999999887333 689998743211 223456677777
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcch
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p 360 (470)
|| +-|.++|+.+|+||+.||++|++.|++|+.|++||||+|.+...
T Consensus 74 Gl~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~ 121 (264)
T PF00108_consen 74 GLPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRV 121 (264)
T ss_dssp TS-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTS
T ss_pred ccccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEecccccccc
Confidence 87 45999999999999999999999999999999999999996543
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-09 Score=110.99 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccc--cCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHH--
Q 012130 236 MLYLLTAGKKALADGGITEDVMNE--LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA-- 311 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~--~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is-- 311 (470)
..|+.+++++||+|+|++++ + ++ +||+|...+.. +.. ...++..+.
T Consensus 49 ~eL~~~a~~~al~~agl~~~---d~~ID----~vi~G~~~~~~---------------------~~~--~~~~a~~~~~~ 98 (438)
T PTZ00455 49 EELLATAIQGTLENTGLDGK---AALVD----KVVVGNFLGEL---------------------FSS--QGHLGPAAVGS 98 (438)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCCcC----EEEEEeccccc---------------------ccc--ccchHHHHHHh
Confidence 46889999999999999876 3 34 68888653211 000 001122233
Q ss_pred -----HHhCCC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 312 -----MDLGWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 312 -----~~~gl~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
.++|+. -|.++|+++|+||+.||+.|+++|++|++|++||+|+|.+.
T Consensus 99 ~gl~~~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms 151 (438)
T PTZ00455 99 LGQSGASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQT 151 (438)
T ss_pred ccCcccccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecc
Confidence 455664 48999999999999999999999999999999999999753
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-09 Score=107.98 Aligned_cols=165 Identities=18% Similarity=0.258 Sum_probs=108.9
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|-|+|+|...|.- .+.+++-+.+......|. .+ .++..+ .+..+. .....|+.++++
T Consensus 2 ~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~--~~---~gi~~r-----------~~~~~~-----~~~~~la~~A~~ 60 (326)
T CHL00203 2 GVHILSTGSSVPNFSVENQQFEDIIETSDHWIS--TR---TGIKKR-----------HLAPSS-----TSLTKLAAEAAN 60 (326)
T ss_pred ccEEEEEEEECCCeEEcHHHHHHhcCCChhhEe--ec---cCeEEE-----------EeCCCC-----CCHHHHHHHHHH
Confidence 36799999999999 566766554321000010 00 001000 011111 124679999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~tV 323 (470)
+||+++|++++ +++ .|++|+..... ... .+..+...+|+++ +.+.|
T Consensus 61 ~aL~~ag~~~~---dId----~vi~~s~~~~~---------------------~~~-----~~~~v~~~Lg~~~~~~~~v 107 (326)
T CHL00203 61 KALDKAHMDPL---EID----LIILATSTPDD---------------------LFG-----SASQLQAEIGATRAVAFDI 107 (326)
T ss_pred HHHHHcCCCHH---HCC----EEEEEeCCCCC---------------------CCc-----hHHHHHHHhCCCCCceeee
Confidence 99999999876 333 46677643211 110 1356888889875 67899
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
..+|+|++.||+.|.++|++|.++.+||+|+|.+. .. + +++...+.+++|||++++|
T Consensus 108 ~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s-~~----------~------------~~~~~~~~~~fgDga~A~l 164 (326)
T CHL00203 108 TAACSGFILALVTATQFIQNGSYKNILVVGADTLS-KW----------I------------DWSDRKTCILFGDGAGAAI 164 (326)
T ss_pred cccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhh-Cc----------C------------CcccCCceEEEcceeeEEE
Confidence 99999999999999999999999999999999721 11 0 1111235789999999999
Q ss_pred eccc
Q 012130 404 LEEL 407 (470)
Q Consensus 404 Le~l 407 (470)
|++.
T Consensus 165 l~~~ 168 (326)
T CHL00203 165 IGAS 168 (326)
T ss_pred EEEc
Confidence 9874
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-09 Score=108.10 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|||++++ +++ ++++++. .++ +.+. ...+..++..+|
T Consensus 25 ~eL~~eAa~~Al~dAgl~~~---dID----~iv~~~~-~~~---------------------~~~~--~~~~~~va~~LG 73 (386)
T PRK08313 25 AGLVREAIDRALADAGLTWD---DID----AVVVGKA-PDF---------------------FEGV--MMPELFLADALG 73 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEecc-ccc---------------------cccc--cCchHHHHHhcC
Confidence 45889999999999999876 344 6777752 111 0000 011357889999
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchh---------------h-----hHH------hhh
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---------------G-----LGG------FVA 368 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~---------------~-----~~~------f~~ 368 (470)
+++ |.+.|+++|+++..+++.|+++|++|++|.+||.|++.+.+.. . +.. +.+
T Consensus 74 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~ 153 (386)
T PRK08313 74 ATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRR 153 (386)
T ss_pred CCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 975 8889999999999999999999999999999999998643210 0 000 011
Q ss_pred cccc----cC------CC--CCCCCCCc-C-CCC--------------CCCcceecceeEeEeeccchhHHhcCCeeeEE
Q 012130 369 CRAL----SQ------RN--NDPTKASR-P-WDI--------------NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420 (470)
Q Consensus 369 ~~~L----s~------~~--~~~~~~~r-p-Fd~--------------~adG~v~GEGagalvLe~l~~A~~~G~~I~a~ 420 (470)
.|.. +. .| .+|.-..| | ++. --|=..+++|++++||.+.+.|++-+.+..++
T Consensus 154 ~G~~~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~ 233 (386)
T PRK08313 154 SGAPEHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAW 233 (386)
T ss_pred HCcCHHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeE
Confidence 1110 00 00 11221111 1 221 11223368999999999999998877777889
Q ss_pred EEEEeeccCCCCCCCcC---cCchhHHHHHhh---------ccccEEEEeee
Q 012130 421 FRGGSFTSDAYHMTEPH---PDGKSAMSLRLN---------FSVQMKSLNGF 460 (470)
Q Consensus 421 I~G~a~~~dg~~~t~P~---p~g~~~~~~~~~---------~~i~~veahGt 460 (470)
|+|++..+|...+...+ ..+......+++ .||+++|+|--
T Consensus 234 I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~d~ 285 (386)
T PRK08313 234 IHGTAMRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIYVP 285 (386)
T ss_pred EEEEEEEecCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEeccC
Confidence 99999887765432211 112212222211 25899999964
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-09 Score=107.51 Aligned_cols=92 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.++..+||+|+|++++ +++ .|++|....... ...+ ++..+...-|
T Consensus 27 ~~L~~~a~~~al~~a~l~~~---~Id----~vi~G~~~~~~~-----------------------~~~~-~ar~~~l~~g 75 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPA---LIE----DVIMGCVSQVGE-----------------------QATN-VARNAVLASK 75 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccccc-----------------------cccc-HHHHHHHHcC
Confidence 56889999999999999886 333 588886531000 0011 1222222234
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
| .-|.++|+.+|+||+.||..|++.|++|++|++||||+|.+.
T Consensus 76 l~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS 120 (390)
T PRK06504 76 LPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMT 120 (390)
T ss_pred CCCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecC
Confidence 4 569999999999999999999999999999999999999864
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-09 Score=107.47 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC
Q 012130 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (470)
Q Consensus 237 rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl 316 (470)
.|...+.+++|+++|++++. ++ -|++|..... +.....++..++..-||
T Consensus 31 ~L~~~~~~~~l~r~~i~~~~---id----~vi~G~~~~~------------------------g~~g~n~aR~~al~agl 79 (417)
T PRK06025 31 HLAATVLKALAERNGLNTAD---VD----DIIWSTSSQR------------------------GKQGGDLGRMAALDAGY 79 (417)
T ss_pred HHHHHHHHHHHHhcCCCHHH---CC----EEEEEcCCCc------------------------CcccCcHHHHHHHhCCC
Confidence 46677889999999998863 33 4888876311 11012256667777777
Q ss_pred --CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 317 --MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 317 --~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+-|.+||+..|+||+.||.+|++.|+.|++|++|+||+|.+.
T Consensus 80 p~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS 123 (417)
T PRK06025 80 DIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMS 123 (417)
T ss_pred CCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccC
Confidence 569999999999999999999999999999999999999976
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=107.46 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH--
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD-- 313 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~-- 313 (470)
..|+.+++++||+|+|++++ +++ .|++|...+... ...++..++..
T Consensus 32 ~eL~~~a~~~al~~agl~~~---~Id----~vv~G~~~~~~~-------------------------~~~~~r~~~l~~g 79 (427)
T PRK09268 32 QDMLTAALDGLVDRFGLQGE---RLG----EVVAGAVLKHSR-------------------------DFNLTRECVLGSA 79 (427)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccCCc-------------------------cccHHHHHHHHcC
Confidence 46889999999999999876 344 588887532100 01123344444
Q ss_pred hCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 314 ~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
++...|.++|+++|+||+.||..|++.|++|.+|++||||+|.+.
T Consensus 80 l~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms 124 (427)
T PRK09268 80 LSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTS 124 (427)
T ss_pred CCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccC
Confidence 444689999999999999999999999999999999999999764
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=104.85 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|+|++++ +++ ++|+++.... +.+ ....+..++..+|
T Consensus 30 ~~L~~~A~~~Al~dagl~~~---dID----~~i~~~~~~~----------------------~~~--~~~~a~~l~~~lG 78 (392)
T PRK06065 30 QELAWEAASKALDEAGLELK---DID----CVVIGSAPDA----------------------FDG--VHMKGEYLSHGSG 78 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEeccCCc----------------------ccc--cccHHHHHHHHcC
Confidence 45889999999999999876 444 6777753110 000 1123556888898
Q ss_pred CC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 316 l~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+. .|.+.|+++|+|+..||..|+++|++|.+|.+||.|++.+
T Consensus 79 ~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~ 121 (392)
T PRK06065 79 GIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKM 121 (392)
T ss_pred CCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecc
Confidence 86 5899999999999999999999999999999999998864
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=105.49 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|+|++++ +++ +|++|..... ..+ .+.....++..+|
T Consensus 38 ~eL~~eA~~~Al~dagl~~~---dID----~vv~~~~~~~----------------------~~g--~~~~~~~~~~~lG 86 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLA---DID----GSVASYFSDH----------------------FQR--QLLAGIMVQDYLG 86 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HcC----EEEEeccccc----------------------ccc--cchhhHHHHHhcC
Confidence 46889999999999999876 344 5666542110 001 1122234678899
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+.. |+++|+++|+|+..||+.|++.|++|++|++||+|++.+.
T Consensus 87 l~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s 130 (430)
T PRK06365 87 LVPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMS 130 (430)
T ss_pred CCCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecc
Confidence 975 8899999999999999999999999999999999999654
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=104.42 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|||++++ +++ +|++|+..+++.. . ....... .. ....+
T Consensus 27 ~eLa~eA~~~AL~dAgl~~~---dID----~vi~g~~~~~~~~---------------~----~~~~~~~-~~--~~~~~ 77 (403)
T PRK06289 27 ADLTREVVDGTLAAAGVDAD---DIE----VVHVGNFFGELFA---------------G----QGHLGAM-PA--TVHPA 77 (403)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccccccc---------------c----ccccchH-HH--HHhhc
Confidence 56899999999999999987 444 6888876432110 0 0000000 11 12234
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+.| |+++|+++|+|++.||+.|+.+|++|++|.+||+|+|.+.
T Consensus 78 ~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s 121 (403)
T PRK06289 78 LWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMK 121 (403)
T ss_pred CCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecC
Confidence 433 7999999999999999999999999999999999988743
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=102.98 Aligned_cols=187 Identities=18% Similarity=0.137 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|||++++ +++ +++.+.. . .. . ....++..+|
T Consensus 26 ~~L~~eA~~~Al~DAgl~~~---dID----~~~~~~~---~-----------------~~-----~----~~~~~~~~lG 69 (388)
T PRK08142 26 AQLHAEVAKGALADAGLSLA---DVD----GYFCAGD---A-----------------PG-----L----GPASMVDYLG 69 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEcCC---C-----------------CC-----c----cHHHHHHhCC
Confidence 46899999999999999876 344 3443111 0 00 0 0134888999
Q ss_pred CCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchh---h----hH------Hhhhc-cc---------
Q 012130 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---G----LG------GFVAC-RA--------- 371 (470)
Q Consensus 316 l~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~---~----~~------~f~~~-~~--------- 371 (470)
+++ |...+.++|+|+..+|..|+++|++|+||.+||.|++.+.+.. . +. .|... +.
T Consensus 70 l~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~ 149 (388)
T PRK08142 70 LKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMC 149 (388)
T ss_pred CCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHH
Confidence 975 6788999999999999999999999999999999988643110 0 00 00000 00
Q ss_pred ----c-----c-----------CCC--CCCCCCC-cCCCC--------------CCCcceecceeEeEeeccchhHHhcC
Q 012130 372 ----L-----S-----------QRN--NDPTKAS-RPWDI--------------NRDGFVMGEGAGVLLLEELEHAKKRG 414 (470)
Q Consensus 372 ----L-----s-----------~~~--~~~~~~~-rpFd~--------------~adG~v~GEGagalvLe~l~~A~~~G 414 (470)
+ + +.| .+|.-.. +|++. --|-..++||++++||.+.+.|++.+
T Consensus 150 a~~ym~~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l~ 229 (388)
T PRK08142 150 AMRHMHEYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSLK 229 (388)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhcC
Confidence 0 0 000 0121111 12221 12344569999999999999998876
Q ss_pred CeeeEEEEEEeeccCCCCCCCcCcCchhH--HHHHhh-------ccccEEEEee
Q 012130 415 AKIYAEFRGGSFTSDAYHMTEPHPDGKSA--MSLRLN-------FSVQMKSLNG 459 (470)
Q Consensus 415 ~~I~a~I~G~a~~~dg~~~t~P~p~g~~~--~~~~~~-------~~i~~veahG 459 (470)
+....|+|++..+|..+...|+...... ...++. .||+++|.|-
T Consensus 230 -~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGi~~~did~~elyD 282 (388)
T PRK08142 230 -RPLVKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEAGVTPADIKYASIYD 282 (388)
T ss_pred -CCCEEEEEEEEecCCccccCcccccHHHHHHHHHHHHHcCCCHHHCCEEEEec
Confidence 4558899999988876544444322221 222221 2899999996
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-08 Score=102.67 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....++.+++.+||+++|++++ +++ .|++|+..+++. + .+.....+...
T Consensus 22 ~~~el~~~a~~~Al~~agl~p~---dID----~vi~g~~~~~~~----------------------g--~~~~~~~~~~~ 70 (393)
T cd00826 22 LAHEAGAKAIAAALEPAGVAAG---AVE----EACLGQVLGAGE----------------------G--QNCAQQAAMHA 70 (393)
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEccCCcc----------------------c--CcHHHHHHHHc
Confidence 3467889999999999999886 333 588887643221 0 01111125566
Q ss_pred hCCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCc
Q 012130 314 LGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (470)
Q Consensus 314 ~gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l 358 (470)
+|+.+ |.++|+++|+|++.||+.|+++|++|++|++||+|+|.+.
T Consensus 71 lg~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s 116 (393)
T cd00826 71 GGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME 116 (393)
T ss_pred CCCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccc
Confidence 77765 9999999999999999999999999999999999999853
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=100.31 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=104.6
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|-|+|+|...|.- .+.+++-+..-.....+. ++ .++.. .. +... -.....|+.+++.
T Consensus 4 ~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~--~~---~Gi~~-----------r~-~~~~----~~~~~~la~~Aa~ 62 (339)
T PRK06840 4 NVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVI--EK---FGIYE-----------KP-VPGP----EDHTSDMAIAAAK 62 (339)
T ss_pred ceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHh--hh---cCcce-----------Ee-eCCC----CCCHHHHHHHHHH
Confidence 79999999999998 566665443211000000 00 00000 00 1111 1224679999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEe-ccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-ccee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIG-SGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYS 322 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG-~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~t 322 (470)
+||+++|++++ +++ .+++. +...++ ..+ ..+.+|...+|++. +.+.
T Consensus 63 ~aL~~ag~~~~---dId----~li~~~~~~~~~--------------------~~p-----~~a~~l~~~lGl~~~~~~~ 110 (339)
T PRK06840 63 PALKQAGVDPA---AID----VVIYIGSEHKDY--------------------PVW-----SSAPKIQHEIGAKNAWAFD 110 (339)
T ss_pred HHHHHcCCCHH---HCC----EEEEeccCCCCC--------------------CCC-----chHHHHHHHhCCCCccccc
Confidence 99999999876 332 34333 321111 011 13577999999965 7888
Q ss_pred ecCCCchHHHHHHHHHHHHHc-CCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc--eeccee
Q 012130 323 ISTACATSNFCILNAANHIIR-GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF--VMGEGA 399 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~-G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~--v~GEGa 399 (470)
|..+|++++.||..|.++|++ |.++.+||.+.+.. +.. + .|+....++ .+|+|+
T Consensus 111 v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~-s~~----------~------------~~~~~~~~~~~~~GDgA 167 (339)
T PRK06840 111 IMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRN-SDL----------V------------DYDNPRTRFMFNFAAGG 167 (339)
T ss_pred ccccchHHHHHHHHHHHHHhcCCCccEEEEEeeccc-ccc----------c------------CcCCCCeeeeccCCCce
Confidence 999999999999999999999 99999999888751 110 1 111122343 369999
Q ss_pred EeEeeccc
Q 012130 400 GVLLLEEL 407 (470)
Q Consensus 400 galvLe~l 407 (470)
+++||++.
T Consensus 168 aA~ll~~~ 175 (339)
T PRK06840 168 SAALLKKD 175 (339)
T ss_pred eEEEEEec
Confidence 99999974
|
|
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=95.92 Aligned_cols=127 Identities=19% Similarity=0.312 Sum_probs=112.7
Q ss_pred CCCCccccccCCHHHHHHHHHHHHHHHhC-CCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccc
Q 012130 222 GWVAPKLSKRMDKFMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300 (470)
Q Consensus 222 ~fi~p~ea~~mdp~~rl~L~aa~eALedA-G~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~ 300 (470)
.||++.+.|+|++..|++++++++++++. .++ .++.++..|++....+.++.+.++ +.++|..|..
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~~~d------------~~VfaS~~Gel~~t~~ll~~l~~~-~~lSPT~Fs~ 87 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDEQPD------------AIVFASRHGELERTFKLLEALAEE-EELSPTAFSQ 87 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccCCCC------------cEEEEeCCCcHHHHHHHHHHHHhC-CCcCccchhh
Confidence 45899999999999999999999999652 221 588899999999999998888765 5689999999
Q ss_pred cchhhHHHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhh
Q 012130 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL 363 (470)
Q Consensus 301 ~~~~~~a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~ 363 (470)
+++|.+++.+++..+.++|+.+|..+-.|...||..|+-.|..| ++-+|++.+|..+ |..+
T Consensus 88 SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~-p~~y 148 (218)
T PF13723_consen 88 SVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPL-PEPY 148 (218)
T ss_pred hhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCC-Chhh
Confidence 99999999999999999999999999999999999999999999 9999999999844 4434
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.2e-08 Score=99.25 Aligned_cols=183 Identities=20% Similarity=0.250 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.++..++++ |++ + +++ .||+|...++. ..++..++...|
T Consensus 26 ~~L~~~a~~~~~~--gi~-~---~Id----~vi~G~~~~~~---------------------------~~~~r~~~~~~G 68 (361)
T PRK06690 26 QQLAAPLLTFLSK--GME-R---EID----DVILGNVVGPG---------------------------GNVARLSALEAG 68 (361)
T ss_pred HHHHHHHHHHHHc--cch-h---hcC----EEEEEecCCCc---------------------------chHHHHHHHHcC
Confidence 4567777777643 875 3 333 58888753211 112334677888
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hh----hh-----H----Hh------hhccc--
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PI----GL-----G----GF------VACRA-- 371 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~----~~-----~----~f------~~~~~-- 371 (470)
+. -|+++|+++|+||+.||..|+++|++|++|++||||+|.+.. |. .+ . +. .+.|.
T Consensus 69 l~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitr 148 (361)
T PRK06690 69 LGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNITR 148 (361)
T ss_pred CCCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCCH
Confidence 85 599999999999999999999999999999999999998753 21 00 0 00 00000
Q ss_pred --------ccCC---C--CCCC-------------CCC--------------cCCCCCCCcce-------ecceeEeEee
Q 012130 372 --------LSQR---N--NDPT-------------KAS--------------RPWDINRDGFV-------MGEGAGVLLL 404 (470)
Q Consensus 372 --------Ls~~---~--~~~~-------------~~~--------------rpFd~~adG~v-------~GEGagalvL 404 (470)
.|.. + .+|. ... ..|+. +|.+ ++||++++||
T Consensus 149 e~~d~~A~~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~--~g~lt~~~~~~~~DGAaAvvl 226 (361)
T PRK06690 149 EMQDEYACLSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLH--NGTVTAGNSCGVNDGACAVLV 226 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccC--CCceeccccCCCCCCeEEEEE
Confidence 0000 0 0010 001 12321 3444 4899999999
Q ss_pred ccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccEEEEeee
Q 012130 405 EELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQMKSLNGF 460 (470)
Q Consensus 405 e~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~veahGt 460 (470)
.+.+.|++.|.+++++|.|++......... +.+......+++ -||+++|.|-.
T Consensus 227 ~s~e~A~~lg~~p~~~i~~~~~~~~~~~~~---~~~~~~a~~~al~~Agl~~~Did~~ei~ea 286 (361)
T PRK06690 227 MEEGQARKLGYKPVLRFVRSAVVGVDPNLP---GTGPIFAVNKLLNEMNMKVEDIDYFEINEA 286 (361)
T ss_pred ecHHHHHHcCCCceEEEEEEEEeccCcccc---hhHHHHHHHHHHHHcCCCHHHcCEeeecch
Confidence 999999999988888999988764322211 112222222222 28999999975
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=98.75 Aligned_cols=121 Identities=24% Similarity=0.232 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+|+.+||++||++++ +++ .+|+|... + ..+.+..++..+|
T Consensus 51 ~eLa~eAa~~ALekAGL~~~---DID----~IIvGdl~--------------------~--------Q~~~As~vA~~LG 95 (327)
T TIGR02845 51 RKLMEDAVNLALKKANLKKD---DVD----FFLAGDLL--------------------N--------QIITANFVARDLG 95 (327)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEeCCC--------------------C--------cccHHHHHHHHhC
Confidence 56999999999999999876 333 46666421 0 0123677888888
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCccee
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~ 395 (470)
+ |.+.|.++|+|+..||..|..+|++|.+|.+||++.+...+.+....| .. ..|..|| ..-...
T Consensus 96 I--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqfr~-----p~-----eyg~q~~----~ta~~t 159 (327)
T TIGR02845 96 I--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQFRY-----PT-----EYGVQKP----PTAQWT 159 (327)
T ss_pred C--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhccc-----cc-----ccccCCC----CeeeEE
Confidence 6 889999999999999999999999999999999999974433211111 10 0111222 345678
Q ss_pred cceeEeEeeccc
Q 012130 396 GEGAGVLLLEEL 407 (470)
Q Consensus 396 GEGagalvLe~l 407 (470)
++|+|++||++.
T Consensus 160 gdGAGA~vl~~~ 171 (327)
T TIGR02845 160 VTGAGAVLLAST 171 (327)
T ss_pred EcccEEEEEeec
Confidence 999999999874
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=98.87 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....|+.+|+.+||+++|++++ +++ .|++.++.+ ..+| ..+..+...
T Consensus 107 ~a~~la~~Aa~~aL~~ag~~~~---dId----~li~~t~t~---------------------~~~P-----~~a~~v~~~ 153 (399)
T PLN03171 107 AVPELAAEAAKKAIAEWGRPAA---DIT----HLVVTTNSG---------------------AHIP-----GVDFRLVPL 153 (399)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEcCCC---------------------CCCC-----chHHHHHHH
Confidence 4556899999999999999876 333 456666532 1122 236788999
Q ss_pred hCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC
Q 012130 314 LGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (470)
Q Consensus 314 ~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a 390 (470)
||++.- .+.+..+|++++++|..|.++|++|....+||.++|.+. .. +. .++. . .++..-
T Consensus 154 LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s-~~----------~~----~~d~-~-~~~~~v 216 (399)
T PLN03171 154 LGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITL-LL----------FN----GPDE-G-CFQTLL 216 (399)
T ss_pred hCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeccc-cc----------cC----CCCc-c-cHHhhh
Confidence 999753 355667999999999999999999999999999999721 00 00 0110 0 011112
Q ss_pred CcceecceeEeEeeccch
Q 012130 391 DGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 391 dG~v~GEGagalvLe~l~ 408 (470)
.+.++|+||+++||++.+
T Consensus 217 ~~~LFGDGAaA~vl~~~~ 234 (399)
T PLN03171 217 NQGLFGDGAAAVIVGADA 234 (399)
T ss_pred ccccccCccEEEEEecCC
Confidence 367899999999999744
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-08 Score=97.39 Aligned_cols=166 Identities=19% Similarity=0.320 Sum_probs=107.9
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|.|+|+|...|.- .+.+++-+.+ |.+ +.| + .+..| +....+..+. .....|+.+|+.
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~--~~~-----~~~----i-~~~~G----i~~r~~~~~~-----e~~~~la~~Aa~ 61 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQL--GLE-----TGW----I-ERRTG----IRCRRWAAPD-----ETLSDLAASAGD 61 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHc--CCC-----HHH----h-hhccC----CeEEEEcCCC-----CCHHHHHHHHHH
Confidence 57899999999998 5666665542 110 110 0 00000 0000111111 123579999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~tV 323 (470)
+||+++|++++ +++ -|++++...++ ..| ..+.+|...+|+.. +++.|
T Consensus 62 ~aL~~ag~~~~---~Id----~li~~t~~~d~--------------------~~p-----~~a~~v~~~Lg~~~~~~~di 109 (326)
T PRK05963 62 MALSDAGIERS---DIA----LTLLATSTPDH--------------------LLP-----PSAPLLAHRLGLQNSGAIDL 109 (326)
T ss_pred HHHHHcCCCHH---HCC----EEEEECCCCCC--------------------CCC-----cHHHHHHHHhCCCCCceeec
Confidence 99999999876 333 46666653211 111 23678999999954 78889
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
..+|++++.||+.|..+|++|. +.+||.++|.. + ..+. ++ ....++++|+|++++|
T Consensus 110 ~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~-s----------~~~~-----~~-------~~~~~~lfGDgA~A~l 165 (326)
T PRK05963 110 AGACAGFLYALVLADGFVRAQG-KPVLVVAANIL-S----------RRIN-----MA-------ERASAVLFADAAGAVV 165 (326)
T ss_pred cchhhHHHHHHHHHHHHHHcCC-CeEEEEEechh-h----------ccCC-----cc-------ccCceEEEeecceEEE
Confidence 9999999999999999999985 88999998862 1 0111 11 1235789999999999
Q ss_pred eccch
Q 012130 404 LEELE 408 (470)
Q Consensus 404 Le~l~ 408 (470)
|++.+
T Consensus 166 l~~~~ 170 (326)
T PRK05963 166 LAPSA 170 (326)
T ss_pred EEecC
Confidence 98643
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-08 Score=98.32 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=108.9
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCC-CCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIET-FDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~-~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~a 242 (470)
+.+-|+|+|...|.- .+.+++++.+... +... ..+ ++..+...+. +..+. .....|+.+|
T Consensus 6 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~-~~~~-~~~i~~~~Gi~~R~-----------~~~~~-----e~~~~la~~A 67 (353)
T PRK12880 6 DKAKISGICVSVPEHKICIDDELESVFSN-DIKT-LKRMKKVIGLNTRY-----------ICDEN-----TCVSDLGKHA 67 (353)
T ss_pred cccEEEEEEEECCCeEecHHHHHHHhcCc-chhh-hhhhhhccCceEEE-----------eCCCC-----CCHHHHHHHH
Confidence 457899999999998 5656555544311 1000 000 0000110010 11111 1346799999
Q ss_pred HHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC--cc
Q 012130 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PN 320 (470)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G--ps 320 (470)
+.+||+++|++++ +++ .+++++..+++ .....+.+|...||++. +.
T Consensus 68 a~~aL~~a~~~~~---dId----~lI~~t~t~d~-------------------------~~P~~a~~v~~~Lg~~~~~~~ 115 (353)
T PRK12880 68 ANTLLQGLNIDKN---SLD----ALIVVTQSPDF-------------------------FMPSTACYLHQLLNLSSKTIA 115 (353)
T ss_pred HHHHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCCcHHHHHHHHhCCCCCceE
Confidence 9999999999876 333 46666654222 12234788999999963 67
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeE
Q 012130 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
+-|..+|++++.||+.|.++|++|..+ +|+.++|.. +.. +. + +....-.++|+||+
T Consensus 116 ~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~-S~~----------~~-----~-------~d~~~~~lFGDGAa 171 (353)
T PRK12880 116 FDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTL-SKF----------IH-----P-------KNMNLAPIFGDGVS 171 (353)
T ss_pred EehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhh-hcc----------CC-----c-------ccCCceeeecccce
Confidence 899999999999999999999999999 888888862 110 11 1 11123468899999
Q ss_pred eEeeccc
Q 012130 401 VLLLEEL 407 (470)
Q Consensus 401 alvLe~l 407 (470)
++||++-
T Consensus 172 A~vl~~~ 178 (353)
T PRK12880 172 ATLIEKT 178 (353)
T ss_pred EEEEEec
Confidence 9999863
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-08 Score=100.93 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
-...|+.+|+.+||+++|++++ +++ .|++.++.+ +..| ..+.+|...
T Consensus 100 ~a~~La~~Aa~~AL~~ag~~~~---dId----~lI~~T~Tg---------------------~~~P-----s~a~~l~~~ 146 (389)
T PLN03168 100 QVPKLAAEAAQKAIKEWGGRKS---DIT----HIVFATTSG---------------------VNMP-----GADHALAKL 146 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCCC---------------------CCCc-----cHHHHHHHH
Confidence 3456889999999999999876 333 466666532 1122 247889999
Q ss_pred hCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC
Q 012130 314 LGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (470)
Q Consensus 314 ~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a 390 (470)
||++.- .+.+..+|++++.||..|.++|++|....+||.++|.+. .. | . .++. ...|.--
T Consensus 147 LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S-~~----~------~----~~~~--~~~~~~~ 209 (389)
T PLN03168 147 LGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTA-VT----Y------R----APSE--NHLDGLV 209 (389)
T ss_pred hCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhh-hh----c------c----Cccc--ccHHHHh
Confidence 999763 688999999999999999999999999999999999732 10 0 0 0000 0011112
Q ss_pred CcceecceeEeEeeccc
Q 012130 391 DGFVMGEGAGVLLLEEL 407 (470)
Q Consensus 391 dG~v~GEGagalvLe~l 407 (470)
...++|+|||++||+..
T Consensus 210 ~~~LFGDGAaAvvl~~~ 226 (389)
T PLN03168 210 GSALFGDGAGVYVVGSD 226 (389)
T ss_pred ccccccCccEEEEEecC
Confidence 45678999999999964
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-08 Score=100.22 Aligned_cols=193 Identities=15% Similarity=0.178 Sum_probs=115.5
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHH---cC--CCccee-CCC-CCCCCCCcccccc----ccCCCCCCC--CCccccc
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLL---EG--VSGISE-IET-FDCTSFPTKIAAE----IKSFSTDGW--VAPKLSK 230 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~---~G--~s~i~~-~~~-~~~~~~~~~~~g~----i~~fd~~~f--i~p~ea~ 230 (470)
.+..|.|+|..+|.- ..-+++++.+. +. ...+.. +.+ |+..+...++... ++.+ +.++ ..|.-..
T Consensus 15 ~~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~-~~~~~~~~p~~~~ 93 (393)
T PLN03172 15 GPATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKEN-PNMCAYMAPSLDA 93 (393)
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhC-ccccccCCCCHHH
Confidence 458899999999988 45555555444 21 111221 111 2223332222211 1111 1111 1122222
Q ss_pred cC----CHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhH
Q 012130 231 RM----DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306 (470)
Q Consensus 231 ~m----dp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 306 (470)
++ .-...|+.+|+.+||+++|++++ +++ .|++.++.+ +..| ..
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~---dId----~ii~~t~t~---------------------~~~P-----~~ 140 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKS---KIT----HLVFCTTSG---------------------VDMP-----GA 140 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEccCC---------------------CcCc-----hH
Confidence 33 33457999999999999999876 222 355566532 1111 25
Q ss_pred HHHHHHHhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCC
Q 012130 307 SAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383 (470)
Q Consensus 307 a~~is~~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~ 383 (470)
+.+|...||++.- .+.+..+|++++.+|..|.+++++|....+||.++|.+. .. | .. ++.
T Consensus 141 a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S-~~----~-----~~-----~~d-- 203 (393)
T PLN03172 141 DYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITA-VT----F-----RG-----PSD-- 203 (393)
T ss_pred HHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh-hh----h-----cc-----ccc--
Confidence 7889999999863 356789999999999999999999999999999999732 10 0 00 100
Q ss_pred cCCCCCCCcceecceeEeEeeccch
Q 012130 384 RPWDINRDGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 384 rpFd~~adG~v~GEGagalvLe~l~ 408 (470)
+..+.--...++|+||+++||++.+
T Consensus 204 ~~~~~~v~~~LFGDGAaAvVl~~~~ 228 (393)
T PLN03172 204 THLDSLVGQALFGDGAAAVIIGADP 228 (393)
T ss_pred ccHHhhhccchhcCceEEEEEecCC
Confidence 0000001346789999999998743
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-07 Score=96.01 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhCC-CCc-ccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 236 MLYLLTAGKKALADGG-ITE-DVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 236 ~rl~L~aa~eALedAG-~~~-~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
..|+.+++++||+||| +++ + +++ ++++++. ..+ ... ......++..
T Consensus 26 ~eL~~eA~~~Al~DAG~l~~~~---dId----~~~~~~~-~~~-----------------~~~-------~~~~~~~~~~ 73 (385)
T PRK06066 26 REMMFEAASRAYKDAGNINPRR---DVD----SFISCQE-DFW-----------------EGI-------AIADEFAPDQ 73 (385)
T ss_pred HHHHHHHHHHHHHhcCCCCChh---cCC----EEEEecC-ccc-----------------Ccc-------cccchhHHHH
Confidence 4699999999999999 975 4 333 5666532 100 000 0011235577
Q ss_pred hCCC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 314 LGWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 314 ~gl~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+|+. .|.+.| |+|+..+++.|+++|++|.||.+||.|++.+
T Consensus 74 lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~ 115 (385)
T PRK06066 74 IGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKP 115 (385)
T ss_pred cccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeec
Confidence 8884 577776 8999999999999999999999999998853
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=96.91 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+|+.+||+++|++++ +++ .+++++..+++ ..+ ..+..+...+
T Consensus 50 ~~~la~~Aa~~aL~~agl~~~---dID----~li~~s~~~~~--------------------~~p-----~~a~~v~~~L 97 (345)
T TIGR00748 50 TATIGVEAARNALKRAKIDPK---DIG----AVYVGSESHPY--------------------AVK-----PTATIVAEAI 97 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCc--------------------ccc-----chHHHHHHHc
Confidence 467999999999999999886 333 56666643211 111 1256788999
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG 392 (470)
|+. -+.+.|..+|+++..||+.|.++|++|.++.+||.+.|.+. .. |+. ..=
T Consensus 98 Gl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~---------------~~---~~~--------~~~ 151 (345)
T TIGR00748 98 GATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQ---------------GA---PGD--------ALE 151 (345)
T ss_pred CCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecc---------------cC---CCc--------cCc
Confidence 985 37888999999999999999999999999999999999731 00 111 111
Q ss_pred ceecceeEeEeecc
Q 012130 393 FVMGEGAGVLLLEE 406 (470)
Q Consensus 393 ~v~GEGagalvLe~ 406 (470)
+..|+|++++||++
T Consensus 152 ~~~GDGAaA~vl~~ 165 (345)
T TIGR00748 152 YTAGAGGAAYIIGE 165 (345)
T ss_pred ccCCCceEEEEEcc
Confidence 45699999999986
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=97.84 Aligned_cols=189 Identities=14% Similarity=0.192 Sum_probs=115.2
Q ss_pred EEEEeecccCCCC-CCHHHHHHHHHcCCCc---------ceeCCCCCCCCCCccccc-c--ccCCCCC--CC--CCcccc
Q 012130 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSG---------ISEIETFDCTSFPTKIAA-E--IKSFSTD--GW--VAPKLS 229 (470)
Q Consensus 167 VaItGmg~~~P~g-~~~~~~w~~L~~G~s~---------i~~~~~~~~~~~~~~~~g-~--i~~fd~~--~f--i~p~ea 229 (470)
+.|+|+|...|.- .+-+++++.+...... +..+ ++..+...+... + .+.+.+. .. +..+..
T Consensus 2 ~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRL--CAKTGIETRYLVLPGGEETYAPRPEMSPSLDERND 79 (361)
T ss_pred cEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHH--HhhcceeEEEEEecCchhhcCCccccCCCcCcchh
Confidence 5799999999998 6778888876543211 0111 000111111110 0 0000100 00 112222
Q ss_pred ccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHH
Q 012130 230 KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309 (470)
Q Consensus 230 ~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ 309 (470)
........|+.+++.+||+++|++++ +++ .|+++++.+ +. ....+.+
T Consensus 80 ~~~~~~~~la~~Aa~~aL~~a~~~~~---~Id----~li~~s~~~---------------------~~-----~P~~a~~ 126 (361)
T cd00831 80 IALEEARELAEEAARGALDEAGLRPS---DID----HLVVNTSTG---------------------NP-----TPSLDAM 126 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHH---HCC----EEEEECCCC---------------------CC-----CCCHHHH
Confidence 23334667999999999999999876 222 355555421 11 1224678
Q ss_pred HHHHhCCCC--cceeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCC
Q 012130 310 LAMDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386 (470)
Q Consensus 310 is~~~gl~G--ps~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpF 386 (470)
|...+|++. +.+.|. .+|++++.||+.|..+|++|..+.+||.++|.... . +. ++. ..
T Consensus 127 i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~-~----------~~-----~~d---~~ 187 (361)
T cd00831 127 LINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSL-W----------YR-----GPD---HR 187 (361)
T ss_pred HHHHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccc-e----------eC-----CCC---cH
Confidence 999999974 578898 89999999999999999999999999999997221 0 10 110 00
Q ss_pred CCCCCcceecceeEeEeeccchh
Q 012130 387 DINRDGFVMGEGAGVLLLEELEH 409 (470)
Q Consensus 387 d~~adG~v~GEGagalvLe~l~~ 409 (470)
+.--..+++|+|++++||++.+.
T Consensus 188 ~~~~~~~lfGDgaaA~ll~~~~~ 210 (361)
T cd00831 188 SMLVGNALFGDGAAAVLLSNDPR 210 (361)
T ss_pred HHhhhhhhccCCceEEEEEcCCC
Confidence 00003578999999999997544
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-07 Score=94.04 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+|||++++ +++ +++++.. . . .. ...++..+|
T Consensus 25 ~~L~~eA~~~Al~DAgl~~~---dID----~~~~~~~-~-~---------------------~~-------~~~l~~~lG 67 (386)
T PRK07855 25 LRLACEAVLAALDDAGLAPS---DVD----GLVTFTM-D-T---------------------NP-------EIAVARALG 67 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEecC-c-c---------------------cc-------HHHHHHHCC
Confidence 45899999999999999876 343 5555321 0 0 00 124888899
Q ss_pred CCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeee
Q 012130 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354 (470)
Q Consensus 316 l~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGv 354 (470)
+++ |...|.++|+|+..+|..|+++|++|.||.+||.|+
T Consensus 68 l~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~ 108 (386)
T PRK07855 68 IGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRA 108 (386)
T ss_pred CCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEee
Confidence 987 445789999999999999999999999999999988
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=99.30 Aligned_cols=193 Identities=15% Similarity=0.168 Sum_probs=117.4
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcC-----CCccee-CCC-CCCCCCCccccccc---cCCCCCCC--CCcccccc
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEG-----VSGISE-IET-FDCTSFPTKIAAEI---KSFSTDGW--VAPKLSKR 231 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G-----~s~i~~-~~~-~~~~~~~~~~~g~i---~~fd~~~f--i~p~ea~~ 231 (470)
.+..|.|+|...|.- ...+++++.+.+- ....+. +.+ |+..+...++.... ...++.++ ..|.-..+
T Consensus 19 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 98 (401)
T PLN03170 19 GPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDAR 98 (401)
T ss_pred CCeEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHH
Confidence 457799999999988 5666666665441 111111 111 23333333322211 11111111 11222233
Q ss_pred CC----HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHH
Q 012130 232 MD----KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (470)
Q Consensus 232 md----p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a 307 (470)
++ -.-.|+.+|+.+||+++|++++ +++ .+++.++.+ +.. ...+
T Consensus 99 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~---dId----~lI~~T~Tg---------------------~~~-----Ps~a 145 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQKAIKEWGQPKS---KIT----HLVFCTTSG---------------------VDM-----PGAD 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEccCC---------------------CCC-----ChHH
Confidence 33 3446999999999999999876 222 355555421 111 2357
Q ss_pred HHHHHHhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCc
Q 012130 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (470)
Q Consensus 308 ~~is~~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~r 384 (470)
.+|...||++.- .+.+..+|++++.+|..|.+++++|....+||.++|.+. .. +. +++. .+
T Consensus 146 ~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S-~~----------~~----~~~~-~~ 209 (401)
T PLN03170 146 YQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITA-VT----------FR----GPSE-SH 209 (401)
T ss_pred HHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhh-hc----------cC----Cccc-ch
Confidence 889999999764 578999999999999999999999999999999999732 10 00 0110 00
Q ss_pred CCCCCCCcceecceeEeEeeccc
Q 012130 385 PWDINRDGFVMGEGAGVLLLEEL 407 (470)
Q Consensus 385 pFd~~adG~v~GEGagalvLe~l 407 (470)
++..-...++|+||+++||++.
T Consensus 210 -~~~~~~~~LFGDGAaAvVl~~~ 231 (401)
T PLN03170 210 -LDSMVGQALFGDGAAAVIVGAD 231 (401)
T ss_pred -hhhhhhhhhhhceeEEEEEecC
Confidence 1111234589999999999874
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=95.60 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=93.0
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|-|+|+|...|.- .+.+++-+.+-.....+.+ ..+...+ .+..+. .....|+.+|+.
T Consensus 2 ~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~-----~~Gi~~R-----------~~~~~~-----~~~~~la~~Aa~ 60 (347)
T PRK04262 2 MVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKR-----GLGVEEK-----------SVPGPD-----EDTATIAVEAAR 60 (347)
T ss_pred ceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhh-----ccCeeee-----------ecCCCC-----cCHHHHHHHHHH
Confidence 37899999999998 6777776554111000000 0011000 011111 224679999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC--ccee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNYS 322 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G--ps~t 322 (470)
+||+++|++++ +++ .+++++..+++ ..+ ..+.++...+|++. +.+.
T Consensus 61 ~aL~~ag~~~~---dId----~li~~s~~~~~--------------------~~p-----~~a~~v~~~Lgl~~~~~~~d 108 (347)
T PRK04262 61 NALKRAGIDPK---EIG----AVYVGSESHPY--------------------AVK-----PTATIVAEALGATPDLTAAD 108 (347)
T ss_pred HHHHHcCCCHH---HCC----EEEEEecCCCc--------------------ccc-----cHHHHHHHHcCCCCCceEEE
Confidence 99999999876 333 46666643211 111 12457888999965 6788
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecC
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~ 356 (470)
+..+|++++.||+.|.++|++|.++.+||.+.|.
T Consensus 109 v~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~ 142 (347)
T PRK04262 109 LEFACKAGTAALQAAMGLVKSGMIKYALAIGADT 142 (347)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 9999999999999999999999999999999996
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-07 Score=95.87 Aligned_cols=193 Identities=13% Similarity=0.171 Sum_probs=115.1
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCC-----Cccee-CCC-CCCCCCCccccccccC-C--CCCCC--CCcccccc
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGV-----SGISE-IET-FDCTSFPTKIAAEIKS-F--STDGW--VAPKLSKR 231 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~-----s~i~~-~~~-~~~~~~~~~~~g~i~~-f--d~~~f--i~p~ea~~ 231 (470)
.+..|.|+|..+|.- ...+++++.+.+-- ..... +.+ |+..+...++....++ + ++.++ ..|.-..+
T Consensus 15 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 94 (391)
T PLN03173 15 GPATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDAR 94 (391)
T ss_pred CCeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHH
Confidence 457899999999988 45556555554321 11111 111 2223332222211100 0 01111 11222223
Q ss_pred CC----HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHH
Q 012130 232 MD----KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (470)
Q Consensus 232 md----p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a 307 (470)
++ -...|+.+|+.+||+++|++++ +++ .|++.++.+ +.. ...+
T Consensus 95 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~---dId----~li~~t~t~---------------------~~~-----P~~a 141 (391)
T PLN03173 95 QDMVVVEVPKLGKEAAAKAIKEWGQPKS---KIT----HLVFCTTSG---------------------VDM-----PGAD 141 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEccCC---------------------Ccc-----cHHH
Confidence 33 3347899999999999999876 222 355555421 111 1357
Q ss_pred HHHHHHhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCc
Q 012130 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (470)
Q Consensus 308 ~~is~~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~r 384 (470)
.+|...+|++.- .+.+..+|++++.+|..|.++|+.+....+||.++|.+. .. | .. ++. +
T Consensus 142 ~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S-~~----~-----~~-----~~d--~ 204 (391)
T PLN03173 142 YQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITA-VT----F-----RG-----PSD--T 204 (391)
T ss_pred HHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhh-hh----h-----CC-----ccc--c
Confidence 889999999863 457799999999999999999999999999999999722 10 0 00 110 0
Q ss_pred CCCCCCCcceecceeEeEeeccc
Q 012130 385 PWDINRDGFVMGEGAGVLLLEEL 407 (470)
Q Consensus 385 pFd~~adG~v~GEGagalvLe~l 407 (470)
..+.--.-.++|+|||++||+..
T Consensus 205 ~~~~~v~~~LFGDGAaAvvl~~~ 227 (391)
T PLN03173 205 HLDSLVGQALFGDGAAAIIIGSD 227 (391)
T ss_pred chhhhhhhhhhcCceEEEEEeCC
Confidence 00111234678999999999863
|
|
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.4e-07 Score=93.96 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+|+.+||+++|++++ +++ .|++.++. ++ .+| ..+..|...|
T Consensus 106 ~~~La~~Aa~~aL~~ag~~~~---dId----~lI~~t~t-~~--------------------~~P-----~~a~~l~~~L 152 (391)
T PLN03169 106 VTQMAVEASLACIKEWGRPVS---DIT----HLVYVSSS-EA--------------------RLP-----GGDLYLAKQL 152 (391)
T ss_pred HHHHHHHHHHHHHHHhCCCHH---HCC----EEEEECcC-CC--------------------CCC-----cHHHHHHHHh
Confidence 456999999999999999876 222 35555542 21 112 2367899999
Q ss_pred CCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCC
Q 012130 315 GWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (470)
Q Consensus 315 gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ad 391 (470)
|++.. .+.+..+|+++++||..|.++|++|....+||.++|.. +.. |. . +. .-+ ++....
T Consensus 153 Gl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~-s~~----~~-----~-----~~-~~~-~~d~~~ 215 (391)
T PLN03169 153 GLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETT-ILG----FR-----P-----PS-PDR-PYDLVG 215 (391)
T ss_pred CcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC-hhh----cc-----C-----CC-ccc-hhhhhh
Confidence 99753 47788999999999999999999999999999999972 111 00 0 00 001 122223
Q ss_pred cceecceeEeEeeccch
Q 012130 392 GFVMGEGAGVLLLEELE 408 (470)
Q Consensus 392 G~v~GEGagalvLe~l~ 408 (470)
..++|+||+++||+..+
T Consensus 216 ~~lFGDGAaA~vl~~~~ 232 (391)
T PLN03169 216 AALFGDGAAAVIIGADP 232 (391)
T ss_pred hhhccCceEEEEEecCC
Confidence 56899999999999744
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-07 Score=90.90 Aligned_cols=120 Identities=23% Similarity=0.207 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+|+.+||++||++++ +++ .+|+|... +. .+.+..++..+|
T Consensus 57 seLa~eAa~~ALekAGI~~~---DID----~lI~Gdll--------------------------~Q--~~sAs~vA~~LG 101 (337)
T PRK08304 57 RKMMEDAIQQALQKANLKKS---DID----YLLAGDLL--------------------------NQ--IISANFAARELG 101 (337)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEECCC--------------------------CC--cchHHHHHHHhC
Confidence 56999999999999999876 333 46666421 00 023567778888
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCccee
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~ 395 (470)
+ |.+-|.++|+++..||..|+.+|++|.+|.+||.+.+.+.+.+.-..| ...-|.-||.. -...
T Consensus 102 I--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerqfr~----------P~eyg~qrp~t----aqwt 165 (337)
T PRK08304 102 I--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQFRF----------PTEYGGQRPPT----AQWT 165 (337)
T ss_pred C--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhhccC----------chhccccCCCc----ceEE
Confidence 6 999999999999999999999999999999999999974433211111 00123344432 2346
Q ss_pred cceeEeEeecc
Q 012130 396 GEGAGVLLLEE 406 (470)
Q Consensus 396 GEGagalvLe~ 406 (470)
+.|+|++||.+
T Consensus 166 vtGAGA~i~~~ 176 (337)
T PRK08304 166 VTGAGAVLLSR 176 (337)
T ss_pred eeccEEEEEec
Confidence 78999999986
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.1e-07 Score=94.31 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH
Q 012130 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 233 dp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
.....++..|+.+||+++|++++ ++ +++|-++.+ + ......+.+|..
T Consensus 170 ~ea~~l~~~A~~~aL~kaGi~p~---dI-----D~LVv~cS~---------------------~----~~~PSlaa~V~~ 216 (502)
T PLN02377 170 EEAEQVMFGALDNLFANTNVNPK---DI-----GILVVNCSL---------------------F----NPTPSLSAMIVN 216 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH---HC-----CEEEEECCC---------------------C----CCCCcHHHHHHH
Confidence 34567999999999999999986 22 344434421 1 112235788999
Q ss_pred HhCCCC--cceeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCC
Q 012130 313 DLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (470)
Q Consensus 313 ~~gl~G--ps~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ 389 (470)
.||++. .++.++ .+|++++.+|+.|.++|+.|....|||.++|.+ +.... ++.+
T Consensus 217 ~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~-S~~~~----------------------~~d~ 273 (502)
T PLN02377 217 KYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENI-TQNWY----------------------FGNK 273 (502)
T ss_pred HhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEecc-ccccC----------------------CCCC
Confidence 999985 688899 599999999999999999999999999999972 22110 1112
Q ss_pred CC----cceecceeEeEeeccc
Q 012130 390 RD----GFVMGEGAGVLLLEEL 407 (470)
Q Consensus 390 ad----G~v~GEGagalvLe~l 407 (470)
+. ...+|+|||++||++.
T Consensus 274 ~s~lv~n~LFgDGAaAvlLs~~ 295 (502)
T PLN02377 274 KSMLIPNCLFRVGGSAVLLSNK 295 (502)
T ss_pred ccccccceeeccccEEEEEecc
Confidence 22 3667999999999863
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=96.52 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=112.8
Q ss_pred CCcEEEEeecccCCCC---CCHHHHHHHHHcCCCcceeCCCCCCCCC--------CccccccccCCCCCCC-CCccc--c
Q 012130 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEIETFDCTSF--------PTKIAAEIKSFSTDGW-VAPKL--S 229 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g---~~~~~~w~~L~~G~s~i~~~~~~~~~~~--------~~~~~g~i~~fd~~~f-i~p~e--a 229 (470)
.++|+.+-++|.-|.. .+.+.|-+....- ..|+.+.+ .+.. |+-.-+.+..+ ++|.. .
T Consensus 99 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~~~~sgl-g~~t~~p~~~~~~~~~~~~~ 170 (511)
T PLN02192 99 PRPVYLVDFSCYKPDDSRKCTRKIFMDRSKLT-------GSFTEENLEFQRKILERSGL-GESTYLPEAVLNVPPNPCMA 170 (511)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHc-------CCCCHHHHHHHHHHHHhcCC-CCcccCChhhccCCCCccHH
Confidence 4579999999999887 4666666655432 11111100 0000 11001111111 22221 1
Q ss_pred ccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHH
Q 012130 230 KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309 (470)
Q Consensus 230 ~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ 309 (470)
........++..|+.+||+++|++++ + |+++|-++.. .......+.+
T Consensus 171 ~~~~Ea~~~~~~Aa~~aL~kaGi~p~---D-----IDiLIv~~S~-------------------------~~~~PSlaa~ 217 (511)
T PLN02192 171 EARKEAETVMFGAIDQLLAKTSVKPK---D-----IGILIVNCSL-------------------------FNPTPSLSAM 217 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHH---H-----CCEEEEECCC-------------------------CCCCchHHHH
Confidence 12234567889999999999999886 2 3344433321 1112345788
Q ss_pred HHHHhCCCC--cceeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCC
Q 012130 310 LAMDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386 (470)
Q Consensus 310 is~~~gl~G--ps~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpF 386 (470)
|...+|++. .++.++ .+|++++.||+.|.++|+.+....|||.++|.+. ...+.
T Consensus 218 I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S-~n~y~---------------------- 274 (511)
T PLN02192 218 VINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENIT-LNWYF---------------------- 274 (511)
T ss_pred HHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEecc-ccCCC----------------------
Confidence 999999984 789999 6999999999999999999999999999999833 11110
Q ss_pred CCCCCc----ceecceeEeEeeccc
Q 012130 387 DINRDG----FVMGEGAGVLLLEEL 407 (470)
Q Consensus 387 d~~adG----~v~GEGagalvLe~l 407 (470)
..+++- .++|+|+|++||++.
T Consensus 275 g~drs~lv~n~LFgDGAaAvLLs~~ 299 (511)
T PLN02192 275 GNDRSMLVSNCLFRMGGAAILLSNK 299 (511)
T ss_pred CCCHHHHhccccccccceEEEEecc
Confidence 112222 357999999999873
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.5e-07 Score=89.81 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
.++|.-.+.+.|||.+.+++. +.+ -||.|.- ........++.+.+.--
T Consensus 30 A~~Lgsvaikaalera~v~~~---~v~----eVi~GnV-------------------------l~AnlGQapaRQaalgA 77 (396)
T KOG1390|consen 30 ATELGSVAIKAALERAVVPPS---DVA----EVIFGNV-------------------------LSANLGQAPARQAALGA 77 (396)
T ss_pred hhhHHHHHHHHHHHhcCCCHH---Hhh----hhhhccc-------------------------cccccCcchHHHHHhhc
Confidence 456888899999999988865 222 2566643 11222333466666666
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcch
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p 360 (470)
|| .-|+.||+--|+|++.||.+|.|.|+.|..|++++||.|.|..-
T Consensus 78 Glp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~v 125 (396)
T KOG1390|consen 78 GLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNV 125 (396)
T ss_pred CCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccC
Confidence 66 56899999999999999999999999999999999999997653
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=92.73 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=113.1
Q ss_pred CCcEEEEeecccCCCC---CCHHHHHHHHHcCCCcceeCCCCCCCC--C------CccccccccCCCCCCC-CCccc--c
Q 012130 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEIETFDCTS--F------PTKIAAEIKSFSTDGW-VAPKL--S 229 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g---~~~~~~w~~L~~G~s~i~~~~~~~~~~--~------~~~~~g~i~~fd~~~f-i~p~e--a 229 (470)
.++|+.+-++|.-|.. .+.+.|-+....-. .|+.+. | .+.+ |+-.-+.+..+ ++|.. .
T Consensus 111 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~f~~~~~~~sg~-g~~ty~P~~~~~~~~~~~~~ 182 (521)
T PLN02854 111 SKPVYLVDFACYKPEDERKISVDSFLTMTEENG-------SFEDETVQFQRRISTRSGL-GDETYLPRGITSRPPNLCME 182 (521)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhcCC-CCccccCccccCCCCcchHH
Confidence 4579999999999887 46777766654321 111110 0 0000 11001111111 33321 2
Q ss_pred ccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHH
Q 012130 230 KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309 (470)
Q Consensus 230 ~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ 309 (470)
.........+..++.++|+++|++++ + |+++|-++.+ + ......+.+
T Consensus 183 ~~r~ea~~v~~~~~~~lL~kaGi~p~---d-----ID~LIv~cS~---------------------~----~p~PSlAa~ 229 (521)
T PLN02854 183 EARAEAEAVMFGALDSLFSKTGVKPR---D-----IGILIVNCSL---------------------F----NPTPSLSAM 229 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHH---H-----CCEEEEECCC---------------------C----CCCCCHHHH
Confidence 22234556788899999999999886 2 3344433321 1 112235788
Q ss_pred HHHHhCCCC--cceeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCC
Q 012130 310 LAMDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPW 386 (470)
Q Consensus 310 is~~~gl~G--ps~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpF 386 (470)
|...+|++. .++.++ .+|++++.+|+.|.++|+.|....+||.++|.+. ...+.
T Consensus 230 I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S-~~~y~---------------------- 286 (521)
T PLN02854 230 IVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT-LNWYF---------------------- 286 (521)
T ss_pred HHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee-cCCCC----------------------
Confidence 999999974 477887 7999999999999999999999999999999832 11100
Q ss_pred CCCC-C---cceecceeEeEeeccc
Q 012130 387 DINR-D---GFVMGEGAGVLLLEEL 407 (470)
Q Consensus 387 d~~a-d---G~v~GEGagalvLe~l 407 (470)
+.++ . -..+|+|+|++||++.
T Consensus 287 g~Drs~lv~~~LFgDGAAAvlLs~~ 311 (521)
T PLN02854 287 GNDRSMLLCNCIFRMGGAAVLLSNK 311 (521)
T ss_pred CCchhhhcceeeeccceeEEEEecc
Confidence 1122 1 4578999999999873
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-06 Score=89.29 Aligned_cols=89 Identities=25% Similarity=0.244 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhCCCC--cccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 236 MLYLLTAGKKALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~--~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
..|+.+++++||+|||+. ++ +++ +++++..... . .+.....++..
T Consensus 28 ~~L~~eA~~~Al~DAGl~~~~~---dID----~v~v~~~~~~-----------------------~---~~~~~~~la~~ 74 (498)
T PRK08257 28 VDLMAAAARAAAADAGADAVLE---AID----SVAVVNQLSW-----------------------R---YRDPPGLLAER 74 (498)
T ss_pred HHHHHHHHHHHHHhcCCCcCHH---HCC----EEEEeccccc-----------------------c---ccCHHHHHHHH
Confidence 468999999999999997 65 344 6777643210 0 01124678889
Q ss_pred hCCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 314 LGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 314 ~gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+|+.. +.....+++.|+..+|+.|++.|.+|+||.+||+|++.+
T Consensus 75 lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~ 119 (498)
T PRK08257 75 LGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQ 119 (498)
T ss_pred cCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeec
Confidence 99964 444566788899999999999999999999999999864
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=82.64 Aligned_cols=187 Identities=14% Similarity=0.177 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+|||++++ +++ +++.+.. ++ +...... ...+...+|
T Consensus 25 ~el~~eA~~~Al~DAgl~~~---dID----~~~~~~~--~~---------------------~~~~~~~--~~~~~~~~G 72 (352)
T PRK07937 25 VEMLMPCFAELYAELGITKS---DIG----FWCSGSS--DY---------------------LAGRAFS--FISAIDSIG 72 (352)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEcc--cc---------------------ccccccc--hhhHHhhcc
Confidence 56899999999999999986 444 4543321 00 0000000 112345567
Q ss_pred CC-C-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-----------------hhh-----hHHhhhccc
Q 012130 316 WM-G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-----------------PIG-----LGGFVACRA 371 (470)
Q Consensus 316 l~-G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-----------------p~~-----~~~f~~~~~ 371 (470)
+. + |...+. +++..||+.|+.+|++|.||.+||.|.+.+.. |.. +..+.....
T Consensus 73 ~~~~~~~~~v~---~~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~~y 149 (352)
T PRK07937 73 AVPPINESHVE---MDAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQARAG 149 (352)
T ss_pred CCCCCceEEec---CcHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHHHH
Confidence 63 3 344454 46888999999999999999999999885321 100 000000000
Q ss_pred -------------cc---CCC--CCCCCCCcCCCCC--------------CCcceecceeEeEeeccchhHHhcCCeeeE
Q 012130 372 -------------LS---QRN--NDPTKASRPWDIN--------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYA 419 (470)
Q Consensus 372 -------------Ls---~~~--~~~~~~~rpFd~~--------------adG~v~GEGagalvLe~l~~A~~~G~~I~a 419 (470)
++ +.| .+|.-..| ++.+ -|=-.+++|++++||.+.+.|++.+.++ .
T Consensus 150 m~~yG~t~e~lA~vavk~r~nA~~NP~A~~r-it~edvl~s~~ia~PL~l~d~~~~~DGAaA~vl~s~~~A~~l~~~p-v 227 (352)
T PRK07937 150 LDAGKWTEEQMAEVAARSRADARRNPSAEPS-ISVDELLARPYFADPLRRHDIAPITDGAAAVVLAAGDRARELRERP-A 227 (352)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhCchhhcc-CCHHHHhcCCcccCCchhhcCCCCCCcceEEEEecHHHHHHcCCCc-E
Confidence 00 000 12222222 1100 0112368999999999999999888777 8
Q ss_pred EEEEEeeccCCCCCCCcCcCchhH---HHHHh-h---ccccEEEEee
Q 012130 420 EFRGGSFTSDAYHMTEPHPDGKSA---MSLRL-N---FSVQMKSLNG 459 (470)
Q Consensus 420 ~I~G~a~~~dg~~~t~P~p~g~~~---~~~~~-~---~~i~~veahG 459 (470)
.|+|++..+|...+...+...... +..++ - .||+++|.|-
T Consensus 228 ~I~g~~~~~~~~~~~~~d~~~~~~~~~a~~~aAgi~~~diD~~Ei~D 274 (352)
T PRK07937 228 WITGIEHRIESPSLGARDLTRSPSTALAAEAATGGDAGGVDVAELHA 274 (352)
T ss_pred EEEEEEEeeCCccccccccccHHHHHHHHHHhcCCCHHHCCEEEEeC
Confidence 999999987765432221111111 21222 1 3899999995
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=89.68 Aligned_cols=124 Identities=11% Similarity=0.126 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH
Q 012130 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 233 dp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
+....++.+|+.+||+++|++++ +++ -|++.++.+ . .....+.+|..
T Consensus 146 ~ea~~la~~Aa~~aL~~agi~p~---dId----~lIv~tst~---------------------~-----~~Pslaa~V~~ 192 (478)
T PLN02932 146 KETEEVIIGAVDNLFRNTGISPS---DIG----ILVVNSSTF---------------------N-----PTPSLSSILVN 192 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEccCC---------------------C-----CCCcHHHHHHH
Confidence 34567999999999999999986 222 355555421 1 12235788999
Q ss_pred HhCCCC--cceeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCC
Q 012130 313 DLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (470)
Q Consensus 313 ~~gl~G--ps~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ 389 (470)
.+|++. .++.++ .||++++.+|..|.++|+.|....|||.++|. ++.... +.. .|. .-
T Consensus 193 ~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~-~S~~~~---------------~~d-~r~--~l 253 (478)
T PLN02932 193 KFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTEN-ITQNLY---------------LGN-NKS--ML 253 (478)
T ss_pred HhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEee-cccccC---------------CCc-chh--hh
Confidence 999963 688898 79999999999999999999999999999998 222211 100 000 00
Q ss_pred CCcceecceeEeEeeccch
Q 012130 390 RDGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 390 adG~v~GEGagalvLe~l~ 408 (470)
-.-.++|+|++++||++.+
T Consensus 254 ~t~~LFgDGAAAvlLs~~~ 272 (478)
T PLN02932 254 VTNCLFRIGGAAILLSNRS 272 (478)
T ss_pred ccceeecccceEEEEeccc
Confidence 1346789999999999743
|
|
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=83.84 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
.-|+.+|+.+||+++ +++ +++ .+++|+..+.+ .....+..|...||
T Consensus 50 ~~la~~Aa~~aL~~a--~~~---~Id----~li~~t~s~~~-------------------------~~~s~a~~v~~~Lg 95 (379)
T TIGR01835 50 VTMAASAAKPILDRN--DKQ---KID----MVIFGTESGID-------------------------QSKAAAVYVHGLLG 95 (379)
T ss_pred HHHHHHHHHHHHHhC--CHh---hCC----EEEEEeCCCCC-------------------------CCCCHHHHHHHHhC
Confidence 569999999999998 443 222 46677764321 01125788999999
Q ss_pred CCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 316 l~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
+++ +.+.|..+|++++.||+.|.++|++|..+.+||.++|.... . + ....-.
T Consensus 96 l~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~a~~-------------~-----~--------~~~~~~ 149 (379)
T TIGR01835 96 LQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDIAKY-------------G-----L--------ESPGEP 149 (379)
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeehhhc-------------c-----c--------CCCCCc
Confidence 975 78889999999999999999999999999999999996100 0 0 011124
Q ss_pred eecceeEeEeecc
Q 012130 394 VMGEGAGVLLLEE 406 (470)
Q Consensus 394 v~GEGagalvLe~ 406 (470)
..|+|++++||++
T Consensus 150 ~~GdGA~A~Ll~~ 162 (379)
T TIGR01835 150 TQGAGAVAMLVSA 162 (379)
T ss_pred cccCccEEEEEec
Confidence 5799999999985
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=78.49 Aligned_cols=120 Identities=22% Similarity=0.215 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+|+.+||++||++++ +++ -+|+|...+ ..+.++.++..+|
T Consensus 55 ~~L~~EA~~~AL~kAGI~~~---DID----~i~vGdL~n----------------------------Q~ipssfvar~LG 99 (334)
T PRK12404 55 RKLLEEACSRAIEKAKLRKE---DIQ----FFLAGDLMN----------------------------QITPTSFAARTLG 99 (334)
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCC----------------------------CcCcHHHHHHHhC
Confidence 46999999999999999876 333 567776521 0122446777787
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCccee
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~ 395 (470)
=|.+-|.+|||++..||..|..+|++|.+|.+||+-.....+.+.-..| ...-|.-||..+. =.|
T Consensus 100 --IP~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~----------P~eyG~Qrp~taq--wTv- 164 (334)
T PRK12404 100 --IPYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRY----------PTEYGGQKPPTAQ--WTV- 164 (334)
T ss_pred --CCccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccC----------cccccCcCCCccc--EEE-
Confidence 4679999999999999999999999999999999987764443322111 0123556675433 233
Q ss_pred cceeEeEeecc
Q 012130 396 GEGAGVLLLEE 406 (470)
Q Consensus 396 GEGagalvLe~ 406 (470)
-|+|++||.+
T Consensus 165 -Tgaga~~l~~ 174 (334)
T PRK12404 165 -TGAGAAILSK 174 (334)
T ss_pred -EceEEEEEec
Confidence 4677777765
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=79.89 Aligned_cols=191 Identities=15% Similarity=0.168 Sum_probs=119.2
Q ss_pred CCcEEEEeecccCCCC---CCHHHHHHHHHcCCCcceeC-CCCCCCCC-CccccccccCCCCCCC--CCccc--cccCCH
Q 012130 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEI-ETFDCTSF-PTKIAAEIKSFSTDGW--VAPKL--SKRMDK 234 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g---~~~~~~w~~L~~G~s~i~~~-~~~~~~~~-~~~~~g~i~~fd~~~f--i~p~e--a~~mdp 234 (470)
.++|+++-+.|.-|.- .+.+.|++....-.. +.+- -+|...-+ .+.+ |+ +.|-|..+ ++|.. ....+.
T Consensus 6 ~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~-f~~~sl~F~~kIlerSGl-G~-eTy~P~~~~~~p~~~s~~~a~~E 82 (290)
T PF08392_consen 6 PRPVYLVDFACYKPPDELRVSREEFIEHARRCGR-FDEESLDFQRKILERSGL-GD-ETYLPPALHEIPPDPSLAAAREE 82 (290)
T ss_pred CCCEEEEeeeecCCCcccccCHHHHHHHHHhccc-CChhHHHHHHHHHHhcCC-Cc-cccCCcccccCCCcccHHHHHHH
Confidence 4589999999999987 578888887664321 1100 00000000 0000 11 01111111 23321 122244
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...++..++.++|+.+|+.|+ .|+++|-.+. .+.....++.+|...|
T Consensus 83 ae~v~f~av~~LL~ktgv~p~--------dIdiLVvncs-------------------------~f~ptPSLsamIvnr~ 129 (290)
T PF08392_consen 83 AEMVIFGAVDDLLAKTGVKPS--------DIDILVVNCS-------------------------LFNPTPSLSAMIVNRY 129 (290)
T ss_pred HHHHHHHHHHHHHHHcCCCHH--------HCCEEEEECc-------------------------CCCcCCcHHHHHHHHh
Confidence 566888999999999999876 3445544331 1122234678899999
Q ss_pred CCCCccee--ec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCC
Q 012130 315 GWMGPNYS--IS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (470)
Q Consensus 315 gl~Gps~t--V~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ad 391 (470)
|++.-..+ +. -|||+|+.+|++|.++|+...-..|||..+|. +++..+.+-.+..+++
T Consensus 130 ~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~-~s~~~Y~G~~rsmlv~------------------ 190 (290)
T PF08392_consen 130 GMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTEN-ISANWYRGNDRSMLVS------------------ 190 (290)
T ss_pred CCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEee-cccccccCCcHHHhhc------------------
Confidence 99875444 33 48999999999999999999999999999998 5565555544444444
Q ss_pred cceecceeEeEeeccchh
Q 012130 392 GFVMGEGAGVLLLEELEH 409 (470)
Q Consensus 392 G~v~GEGagalvLe~l~~ 409 (470)
..+++.|+++++|.+...
T Consensus 191 NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 191 NCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred cccccCCceeEEeecCcc
Confidence 235778999999987544
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.9e-05 Score=79.29 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..-|+++|+..+|++++++++. ++ -|++|+..+.+. . ...+..|...|
T Consensus 50 ~~tma~~AA~~lL~~a~id~~~---Id----~Liv~TeS~~d~--------------------s-----ps~a~~v~~lL 97 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDYNQ---IG----RLEVGTETIIDK--------------------S-----KSVKTVLMQLF 97 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCHHH---CC----EEEEECCCCCCC--------------------C-----CchHHHHHHHH
Confidence 3468999999999999998763 32 477777643221 1 11355666655
Q ss_pred CCCC----cceeecCCCchHHHHHHHHHHHHHcCCC--CEEEEeeecC
Q 012130 315 GWMG----PNYSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDA 356 (470)
Q Consensus 315 gl~G----ps~tV~tACsSsl~AI~~A~~~Lr~G~~--d~aLvGGvd~ 356 (470)
++-| .++-+..||+++..||..|..+|.+|.. +.+||.+.|.
T Consensus 98 ~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDi 145 (454)
T TIGR01833 98 EESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDI 145 (454)
T ss_pred HhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecc
Confidence 4423 4677889999999999999999999974 9999999997
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.7e-06 Score=84.60 Aligned_cols=57 Identities=30% Similarity=0.392 Sum_probs=51.4
Q ss_pred hHHHHHHHHhCCCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchh
Q 012130 305 MGSAMLAMDLGWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (470)
Q Consensus 305 ~~a~~is~~~gl~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~ 361 (470)
.++..++...|+.+ |.++|+.+|+|++.||+.|+++|++|++|++|+||+|.+..-.
T Consensus 68 ~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~ 126 (392)
T COG0183 68 NIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAP 126 (392)
T ss_pred cHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCC
Confidence 35677889999986 9999999999999999999999999999999999999866544
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.1e-05 Score=80.65 Aligned_cols=185 Identities=15% Similarity=0.173 Sum_probs=106.9
Q ss_pred CCcEEEEeecccCCCC---CCHHHHHHHHHcCCCcceeCCCCCCCC--CCccccc--cccC--CCCCCC--CCcccc--c
Q 012130 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEIETFDCTS--FPTKIAA--EIKS--FSTDGW--VAPKLS--K 230 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g---~~~~~~w~~L~~G~s~i~~~~~~~~~~--~~~~~~g--~i~~--fd~~~f--i~p~ea--~ 230 (470)
.++|+.+-++|.-|.. .+.+.|-+....- ..|+.+. |..++.. .+.+ +-+... .+|... .
T Consensus 57 ~~~vylvd~~c~~p~~~~~~~~~~~~~~~~~~-------~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~ 129 (466)
T PLN00415 57 SKPVYLVDFSCHQPTDSCKISSETFFNMAKGA-------QLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYE 129 (466)
T ss_pred CCcEEEEeeeeecCCccccccHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhh
Confidence 4579999999999877 4677777766532 1111110 0000000 0000 011111 111110 1
Q ss_pred cCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHH
Q 012130 231 RMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (470)
Q Consensus 231 ~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~i 310 (470)
.....+.-+..|+.+||+++|++++ + |.++|-++.+. ......+.++
T Consensus 130 ~~~e~em~i~~A~~~aL~~aGi~p~---d-----ID~LIvs~T~~-------------------------~~~Pslaa~l 176 (466)
T PLN00415 130 ARHESELVIFGALNSLFKKTGIEPR---E-----VGIFIVNCSLF-------------------------NPNPSLSSMI 176 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHH---H-----CCEEEEECcCC-------------------------CCCchHHHHH
Confidence 1123334444577888999999986 2 23444233211 0112347788
Q ss_pred HHHhCCCC--cceeecC-CCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCC
Q 012130 311 AMDLGWMG--PNYSIST-ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (470)
Q Consensus 311 s~~~gl~G--ps~tV~t-ACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd 387 (470)
...+|++. ..+-|.. +|++++.+|..|.+.++.+....+||.++|.+ +...+.+-.+...+
T Consensus 177 ~~~LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~-S~~~~~~~dr~~lv--------------- 240 (466)
T PLN00415 177 VNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENM-TLSMYRGNDRSMLV--------------- 240 (466)
T ss_pred HHHhCCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEecc-cccccCCCcHhHhc---------------
Confidence 89999972 4677887 99999999999999999999999999999972 22111000000000
Q ss_pred CCCCcceecceeEeEeeccc
Q 012130 388 INRDGFVMGEGAGVLLLEEL 407 (470)
Q Consensus 388 ~~adG~v~GEGagalvLe~l 407 (470)
...++|+|++++||++.
T Consensus 241 ---~n~LFgDGAAAvlLs~~ 257 (466)
T PLN00415 241 ---PNCLFRVGGAAVMLSNR 257 (466)
T ss_pred ---cceeecccceEEEEecC
Confidence 12467999999999974
|
|
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.9e-06 Score=66.03 Aligned_cols=64 Identities=30% Similarity=0.448 Sum_probs=47.1
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeE
Q 012130 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
+-|..+|++.+.||+.|..+|++|.++.+|+.+.|.... . +. +.| ....+++|+|++
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~-~----------~~-----------~~~-~~~~~~~gDgAa 57 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSR-I----------VD-----------RTD-RQTAFIFGDGAA 57 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG-G----------SH-----------TTH-HHHHTTB-EEEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccc-c----------cc-----------ccc-cCcceeecchhe
Confidence 357889999999999999999999999999999997321 1 00 001 223457999999
Q ss_pred eEeeccc
Q 012130 401 VLLLEEL 407 (470)
Q Consensus 401 alvLe~l 407 (470)
++||++.
T Consensus 58 A~vl~~~ 64 (80)
T PF08545_consen 58 AVVLSRD 64 (80)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999985
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.1e-05 Score=71.83 Aligned_cols=94 Identities=24% Similarity=0.409 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
++.|...+++.||..+++.++ ..+ .|++|.-..... +.. .++.++....
T Consensus 28 aTdL~~~AakAAL~aa~v~~e---~VD----~VI~GNV~aSSs----------------DgI--------Yl~RHvGL~~ 76 (396)
T KOG1391|consen 28 ATDLGVVAAKAALKAANVGAE---AVD----HVIMGNVLASSS----------------DGI--------YLARHVGLRV 76 (396)
T ss_pred hhhHHHHHHHHHHhhcCCChh---hcc----eEEEeeeeeccC----------------Cce--------Eeeecccccc
Confidence 345777899999999999876 444 466664311000 000 0112222222
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
|. .-|.++|+.-|.|+.++|-.++|.|.-|+++++|+||++.|..
T Consensus 77 GvP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq 123 (396)
T KOG1391|consen 77 GVPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQ 123 (396)
T ss_pred CCcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCcccccc
Confidence 32 3489999999999999999999999999999999999998643
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.3e-05 Score=69.36 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=30.3
Q ss_pred eEEEEEEeeccCC-CCC--CCcCcCchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 418 YAEFRGGSFTSDA-YHM--TEPHPDGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 418 ~a~I~G~a~~~dg-~~~--t~P~p~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
||+|+|+++++|| .+. +.|++.++...+.+++ -+|+|||+|||||.+
T Consensus 1 ya~i~g~~~~~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~ 57 (119)
T PF02801_consen 1 YAVIRGYGVNSDGARSSSLTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPL 57 (119)
T ss_dssp SEEEEEEEEEE-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHH
T ss_pred CEEEEEEEEECCCCCCCCCcCcCHHHHHHHHHHHHhhhccccccceeeeeecccccc
Confidence 8999999999999 654 4455555544444433 299999999999986
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=77.40 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=89.7
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
..|-|.|+|..+|.- .+.+++-+.+ |.+ +.|-..+.-.+... +..+. -| ..-|+.+|+
T Consensus 3 ~~vgI~gig~Y~P~~~v~n~eLa~~~--g~~-----~~~~~~GI~~r~~a---------va~~~----Ed-~~tmA~~AA 61 (459)
T PLN02577 3 KNVGILAMEVYFPPTCVQQEALEAHD--GVS-----KGKYTIGLGQDCMA---------FCTDV----ED-VISMSLTVV 61 (459)
T ss_pred CccEEEEEEEeCCCeEEcHHHHHHHh--CCC-----HHHHhhccceeEec---------cCCCC----CC-HHHHHHHHH
Confidence 368999999999998 6777765542 211 01100000000000 00111 12 346999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHH---HHhCCCC-c
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA---MDLGWMG-P 319 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is---~~~gl~G-p 319 (470)
.+||+++|++++. ++ -|++||..+... + ...+..|. ..+|.+. +
T Consensus 62 ~~aL~~agid~~~---Id----llivaTeT~~d~--------------------~-----ps~A~~v~~ll~~LG~~~~~ 109 (459)
T PLN02577 62 KSLLEKYNIDPKQ---IG----RLEVGSETVIDK--------------------S-----KSIKTFLMQLFEESGNTDIE 109 (459)
T ss_pred HHHHHHcCCCHHH---CC----EEEEEcCCCCCC--------------------C-----CchHHHHHHHHHHhCCCCcE
Confidence 9999999998863 33 477787643211 1 11244443 4556543 6
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCC--CEEEEeeecC
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDA 356 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~--d~aLvGGvd~ 356 (470)
++-|..||++++.||..|.++|++|.. +.+||.|+|.
T Consensus 110 afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~ 148 (459)
T PLN02577 110 GVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADS 148 (459)
T ss_pred EeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEech
Confidence 788999999999999999999999985 9999999997
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=70.91 Aligned_cols=91 Identities=14% Similarity=0.258 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC-
Q 012130 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW- 316 (470)
Q Consensus 238 l~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl- 316 (470)
|+..+....+|+-+++|..+. -|++|+..... . .++.+...+++-|+
T Consensus 64 Ll~~vl~a~ie~t~~dp~~ig-------di~vG~vL~pg------------------------~-ga~e~R~a~~~ag~P 111 (435)
T KOG1389|consen 64 LLAAVLRAVIEKTNLDPSLIG-------DIVVGTVLAPG------------------------S-GASECRMAAFYAGFP 111 (435)
T ss_pred HHHHHHHHHHhhcCCCHHHhc-------ceeeeeccCCC------------------------c-chHHHHHHHHHcCCC
Confidence 555566777899999886332 26777653211 1 12222333444455
Q ss_pred -CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcch
Q 012130 317 -MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360 (470)
Q Consensus 317 -~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p 360 (470)
+-|-.+|+.-|+|+|+|+..-...|+.|.+|+-|.+|+|.|.+.
T Consensus 112 ~tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~ 156 (435)
T KOG1389|consen 112 ETVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTN 156 (435)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhccc
Confidence 56889999999999999999999999999999999999998764
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00047 Score=66.52 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC
Q 012130 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (470)
Q Consensus 238 l~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~ 317 (470)
++-++...||+|+++.-. +++..-+|-+.|-+.-+ .|.-|.+|++
T Consensus 32 ~a~ea~tkal~da~ikys---~vqqa~vgyvfgdstcg--------------------------------qraiyevgmt 76 (408)
T KOG1406|consen 32 FAKEAITKALQDAGIKYS---EVQQAVVGYVFGDSTCG--------------------------------QRAIYEVGMT 76 (408)
T ss_pred HHHHHHHHHHHhcCCCHH---HHHhhhheeeecCCccc--------------------------------hHHHHhcccc
Confidence 556889999999999854 55666677777654322 2334567888
Q ss_pred C-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 318 G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 318 G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
| |-+.|++.|+++..||.+|.|.|++|..|.+|+-|-+.+
T Consensus 77 gipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm 117 (408)
T KOG1406|consen 77 GIPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKM 117 (408)
T ss_pred CcceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhh
Confidence 8 899999999999999999999999999999999999874
|
|
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=60.62 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
-...|..+++.+||+++|++++.++ .+++-++.| .....+-.++...
T Consensus 99 ~a~~L~~~Aa~~AL~~~g~~~~dIt-------hlv~vs~TG--------------------------~~~PglD~~l~~~ 145 (226)
T PF00195_consen 99 EAPPLAEEAARKALAEAGLDPSDIT-------HLVTVSCTG--------------------------IAAPGLDARLINR 145 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTS-GGGEC-------EEEEEESSS--------------------------SECS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccc-------eEEEEecCC--------------------------cCCCchhHHHHhc
Confidence 3456889999999999999876222 455555432 1122234678888
Q ss_pred hCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 314 LGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 314 ~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
+||+.- .....-||..+..+|..|.+..++..-..+||..+|++
T Consensus 146 LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElc 192 (226)
T PF00195_consen 146 LGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELC 192 (226)
T ss_dssp HT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEG
T ss_pred CCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEee
Confidence 999653 24456699999999999999999999999999999974
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0087 Score=61.33 Aligned_cols=136 Identities=26% Similarity=0.357 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCee-EEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKC-GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rv-GV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
.-|+++|+.++|..+++++. +| .|++|+..+.+.. . ..+..|+..|
T Consensus 52 vTmaveAA~~~l~r~~~D~~--------~Ig~v~vgTES~~d~~---------------K----------~~at~v~~~l 98 (377)
T COG3425 52 VTMAVEAARNALKRADIDPS--------KIGAVIVGSESGPDAV---------------K----------PTATIVAEAL 98 (377)
T ss_pred HHHHHHHHHHHHhccCCCHH--------HCceEEEecCCCcccc---------------c----------chHHHHHHHh
Confidence 45899999999999988875 33 5888887533221 1 1367788899
Q ss_pred CCCCccee--ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCc
Q 012130 315 GWMGPNYS--ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (470)
Q Consensus 315 gl~Gps~t--V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG 392 (470)
|+.--..+ +..||-++..||++|..++.+|..+.+||.|.|.... . |...+.
T Consensus 99 g~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~-----------~-------~~~~~E-------- 152 (377)
T COG3425 99 GLNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQY-----------A-------PGDALE-------- 152 (377)
T ss_pred CCCCceehhhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhcc-----------C-------CCcccC--------
Confidence 98654444 5569999999999999999999999999999997211 0 111111
Q ss_pred ceecceeEeEeeccchhHHhcCCeeeEEEEEEee-ccCCCCCCCcC
Q 012130 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF-TSDAYHMTEPH 437 (470)
Q Consensus 393 ~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~-~~dg~~~t~P~ 437 (470)
+--|.|++++|+.+ +..+.+++.+.+. ..|-..+..|+
T Consensus 153 ~t~GAGavA~lIg~-------n~~~~a~~~~~~syt~d~~DFwRp~ 191 (377)
T COG3425 153 YTAGAGAVAFLIGK-------NPPIVAEFEGTGSYTTDTPDFWRPD 191 (377)
T ss_pred ccCCCceEEEEEcc-------CCCeEEEecCceEEecCCCcccccC
Confidence 23678999999984 2556677755444 35544444443
|
|
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.063 Score=49.48 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=84.8
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
++|=|.+|+..+|.- .+.+++-+. .|.+ +..|...++-+- ..|.++.| | ..-|++.++
T Consensus 3 ~~VGI~~i~~y~p~~~v~~~~La~~--~g~d---------~~K~~~glgq~~-----~av~~~~E----D-~vTmA~nAa 61 (174)
T PF01154_consen 3 QNVGIDAIEFYIPRYYVDQEELAEA--RGVD---------PGKYTIGLGQEK-----MAVPPPDE----D-IVTMAANAA 61 (174)
T ss_dssp SSEEEEEEEEE-ESEEEEHHHHHHH--TTS----------TCHHHTTT--SE-----EEE--TTS------HHHHHHHHH
T ss_pred ccccEeEEEEecCceEecHHHHHHH--hCCC---------HHHhhhhcCeeE-----EEeCCCcc----c-HHHHHHHHH
Confidence 579999999999988 677776432 1221 111100011000 00111222 2 234889999
Q ss_pred HHHHHhCCCCcccccccCCCeeE-EEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCCcc--
Q 012130 244 KKALADGGITEDVMNELDKSKCG-VLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN-- 320 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvG-V~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps-- 320 (470)
...|++.+++++ +|| +++||..+-. .. -.++..+...||+.|..
T Consensus 62 ~~ll~~~~id~~--------~Ig~l~vgTES~vD---------------------~s----Ks~~t~v~~ll~~s~~~~~ 108 (174)
T PF01154_consen 62 KPLLDRYNIDPD--------DIGRLIVGTESGVD---------------------KS----KSISTYVHQLLGLSGNPDC 108 (174)
T ss_dssp HTTHHHHT-HHH--------HEEEEEEE-SS-SB---------------------SS----S-HHHHHHHHTTTTT-SSS
T ss_pred HHHHHHcCCCHH--------HccEEEEecccccc---------------------cc----ccHHHHHHHHhCcCCCCce
Confidence 999999877665 344 6677753211 11 11467788899996642
Q ss_pred --eeecCCCchHHHHHHHHHHHHHcCCCC--EEEEeeecC
Q 012130 321 --YSISTACATSNFCILNAANHIIRGEAN--VMLCGGSDA 356 (470)
Q Consensus 321 --~tV~tACsSsl~AI~~A~~~Lr~G~~d--~aLvGGvd~ 356 (470)
+-+-.||-++..||..|+.+|.++..| .+||.+.|.
T Consensus 109 ~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDi 148 (174)
T PF01154_consen 109 RGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDI 148 (174)
T ss_dssp EEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEE
T ss_pred eeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccc
Confidence 445679999999999999999999776 899999997
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0097 Score=66.71 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+.+..|.++ +|||+++|++|+|+..+|+. + |.+.+|+| ||+..|+
T Consensus 566 i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~-l----~~~~~~~~-pt~~~la 612 (705)
T PRK06060 566 VDQDLAFSELGFDSQMTVTLCKRLAAVTGLR-L----PETVGWDY-GSISGLA 612 (705)
T ss_pred CCCCCChhhcCchHHHHHHHHHHHHHHhCCC-C----CceeeecC-CCHHHHH
Confidence 5667889999 99999999999999999998 8 99999999 9999999
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.01 Score=58.03 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=46.6
Q ss_pred HHHHHHHHhCC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 306 GSAMLAMDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 306 ~a~~is~~~gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
++...+..-|+ +-|..||.-+|-|+.+|+...+-+|..|.||++++||||++.+
T Consensus 105 iareaal~agfsdktpahtvtmacissn~amttgmgliatg~~dvivaggvelmsd 160 (465)
T KOG1392|consen 105 IAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSD 160 (465)
T ss_pred HHHHHHHhcCCCCCCccceeeeehhccchhhhccceeEeeCCcCEEEEcceeeccc
Confidence 34555555566 5699999999999999999999999999999999999998654
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.13 Score=51.25 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....+..++.++||+++++.++.+ + .|+.-++.| .....+=.+|...
T Consensus 75 ~a~~l~v~a~r~aL~~~~l~pedI---d----~vv~vtsTG--------------------------~~~Ps~dari~~~ 121 (356)
T COG3424 75 EAVPLGVDALRRALDGSPLRPEDI---D----AVVTVTSTG--------------------------LATPSLDARIVGE 121 (356)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHC---c----EEEEEeecc--------------------------ccCCChhHHHHhh
Confidence 455688999999999999987632 2 344444322 1111223567777
Q ss_pred hCCCCcc---eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCC
Q 012130 314 LGWMGPN---YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (470)
Q Consensus 314 ~gl~Gps---~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~ 357 (470)
|||.--. -.-.-+|+.+..++..|.+.+|..--..+|+..+|++
T Consensus 122 Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELC 168 (356)
T COG3424 122 LGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELC 168 (356)
T ss_pred cCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeee
Confidence 7774321 2234599999999999999999999999999999974
|
|
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=88.59 E-value=3 Score=41.81 Aligned_cols=121 Identities=23% Similarity=0.187 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..+|+.+++..||+.+++.++ +|-++++-.. .+. .+.++..+..|
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~--------dId~~~aGDL-------------------------lnQ--~i~s~f~ar~l 95 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKE--------DIDYLFAGDL-------------------------LNQ--IISSSFAARDL 95 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GG--------G-SEEEEEET-------------------------TCC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH--------HCeEEEehhh-------------------------hhh--hHHHHHHHHhc
Confidence 357889999999999999875 3336666431 111 12244455555
Q ss_pred CCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcce
Q 012130 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (470)
Q Consensus 315 gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v 394 (470)
++ |=+=+-.|||++..+|.+|..+|..|-+|.+|++-.....+.+.-..|- . .-|.-||-.+. .
T Consensus 96 ~i--Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQfR~P-----~-----EyG~Qrp~tAq----w 159 (329)
T PF07451_consen 96 GI--PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQFRFP-----T-----EYGGQRPPTAQ----W 159 (329)
T ss_dssp T----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHHT--------G-----GGT----TT------E
T ss_pred CC--CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhhccCc-----h-----hccCCCCCccc----E
Confidence 44 5566788999999999999999999999999999887755443322220 0 12344553322 2
Q ss_pred ecceeEeEeecc
Q 012130 395 MGEGAGVLLLEE 406 (470)
Q Consensus 395 ~GEGagalvLe~ 406 (470)
---|+|++||.+
T Consensus 160 TVTGaGa~il~~ 171 (329)
T PF07451_consen 160 TVTGAGAAILSK 171 (329)
T ss_dssp E--EEEEEEEES
T ss_pred EEeceEEEEEec
Confidence 346788888885
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.12 Score=39.15 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 76 GSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 76 ~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
+.+..|.++ +||+..+++.++++...|+. + +...+|++ ||...++
T Consensus 19 ~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~-i----~~~~~~~~-~ti~~l~ 64 (67)
T PF00550_consen 19 DPDTDFFDLGLDSLDAIELVSELEEEFGIK-I----PPSDLFEH-PTIRDLA 64 (67)
T ss_dssp STTSBTTTTTSSHHHHHHHHHHHHHHHTSS-T----THHHHCTS-SSHHHHH
T ss_pred CCCCCHHHhCCchHHHHHHHHHHHHHHcCC-C----CHHHHHcC-CCHHHHH
Confidence 345666678 99999999999999999987 6 77888887 8988877
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 470 | ||||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 6e-59 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 2e-56 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 3e-53 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 3e-53 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 2e-52 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 4e-51 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 4e-51 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 5e-51 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 1e-50 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 3e-50 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 6e-50 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 3e-47 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 1e-43 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 2e-43 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 1e-39 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 2e-38 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 2e-37 | ||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 3e-37 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 2e-36 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 1e-32 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 1e-32 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 2e-31 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 2e-31 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 7e-31 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 7e-31 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 7e-31 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 8e-31 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 2e-30 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 6e-28 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 1e-26 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 4e-26 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 4e-26 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 1e-25 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 2e-24 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 4e-24 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 2e-23 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 2e-11 | ||
| 3zen_D | 3089 | Cryo-em Structure Of The Mycobacterial Fatty Acid S | 2e-05 | ||
| 2uv9_A | 1878 | Crystal Structure Of Fatty Acid Synthase From Therm | 3e-05 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 6e-05 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 1e-04 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 3e-04 |
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 | Back alignment and structure |
|
| >pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces Lanuginosus At 3.1 Angstrom Resolution. This File Contains The Alpha Subunits Of The Fatty Acid Synthase. The Entire Crystal Structure Consists Of One Heterododecameric Fatty Acid Synthase And Is Described In Remark 400 Length = 1878 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 404 bits (1040), Expect = e-138
Identities = 126/296 (42%), Positives = 175/296 (59%), Gaps = 5/296 (1%)
Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
+ HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F
Sbjct: 7 HHHSSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFD 66
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
AAEI+ F D + K + R D + LY L A ++A+ + + L++ + GV+
Sbjct: 67 VHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVI 123
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
+ SG+GG+K D + L K++ P +P A NM S +AM G G SI+TAC
Sbjct: 124 VASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTAC 183
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
++SN I +A I G +VML GG++A++ P + GF A ALS DPT+AS P+D
Sbjct: 184 SSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFD 242
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+R+GFVMGEG+G+L+LE LEHA+KRGA I AE G T DAYHMT PHP+G+ A
Sbjct: 243 KDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGA 298
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-137
Identities = 123/283 (43%), Positives = 178/283 (62%), Gaps = 4/283 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 4 LEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDAT 63
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +KRMD+F + + A ++A+ D + +NEL+ + GVLIG+G+GG+KV D
Sbjct: 64 QFLDRKEAKRMDRFCHFAVCASQQAINDAKLV---INELNADEIGVLIGTGIGGLKVLED 120
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 121 QQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRL 180
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+G
Sbjct: 181 VQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+L+LEELE A RGAKIY E G + T DAYH+T P PDG+ A
Sbjct: 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGA 283
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-136
Identities = 126/283 (44%), Positives = 185/283 (65%), Gaps = 4/283 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ + E + ++ G IGSG+GG+ + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEE 131
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+L +K++PF VP NM + L + G GP+ SI+TA + I +AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARI 191
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+L+LEE EHAKKRGAKIYAE G +SDAYHMT P +G A
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGA 294
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-135
Identities = 117/283 (41%), Positives = 184/283 (65%), Gaps = 5/283 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G V+P+G++ + + N +GV+G++++ + FP KIAAE+K F +
Sbjct: 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD+F Y + + + A+ D G+ +++ + ++ GV IGSG+GGM+ F
Sbjct: 61 KYLEKKEARKMDRFTHYAIASAEMAVQDSGLV---IDDSNANRVGVWIGSGIGGMETFET 117
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
E +++++PF VP +MGS +++ G G N + TACAT+ I +A
Sbjct: 118 QYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKV 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG+A+ M+ GG++A + + L GF A +ALS N DP A RP+D +RDGF++GEGAG
Sbjct: 178 IERGDADAMITGGAEAPITKMSLAGFTANKALS-LNPDPETACRPFDKDRDGFIIGEGAG 236
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+++LEE EHAK RGAKIYAE G T DAYH+T P P+G+ A
Sbjct: 237 IVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGA 279
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 394 bits (1015), Expect = e-134
Identities = 116/283 (40%), Positives = 174/283 (61%), Gaps = 5/283 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 25 SQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIE 84
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F
Sbjct: 85 DHIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEI 141
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
A + L ++++PF VP +M + +++DLG GPN + TACAT I A
Sbjct: 142 AHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKI 201
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
+ RG+A+ M+ GG++A + + + GF A RALS N+D A RP+ RDGFVMGEGAG
Sbjct: 202 VQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAG 260
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+L++E LE A+ RGA IYAE G T DAYH+T P P+G+
Sbjct: 261 ILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGG 303
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-134
Identities = 125/296 (42%), Positives = 179/296 (60%), Gaps = 11/296 (3%)
Query: 157 KKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK 216
H +RVV+TG+GLVSPL + + LL G SG + F+ +IA I
Sbjct: 2 AHHHHHHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIP 61
Query: 217 S-------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
F+ D + PK +++D F++Y + A +AL D G N+ D+ + GVLI
Sbjct: 62 VGDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGW--HPENDEDQVRTGVLI 119
Query: 270 GSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACA 328
GSG+GG++ +A LR ++++PF +P N+ S +++ GPN+S+ TACA
Sbjct: 120 GSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACA 179
Query: 329 TSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWD 387
T I +AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D
Sbjct: 180 TGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYD 239
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+RDGFVMGEGAG+++LEELEHA RGAKIYAE G + DA+H+T P G+ A
Sbjct: 240 EDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGA 295
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 393 bits (1011), Expect = e-134
Identities = 107/296 (36%), Positives = 165/296 (55%), Gaps = 11/296 (3%)
Query: 155 TTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAE 214
+ + + + +RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA
Sbjct: 12 SIEGRSRLH-RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAY 70
Query: 215 IKS------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
+ F+ +V+ K M + + A + A+ D G +E D+ GV
Sbjct: 71 VPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGW--HPQSEADQVATGVA 128
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
IG G+ ++V + + Y K++PF VP NM + +++ GPN+++STAC
Sbjct: 129 IGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAC 188
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
T + ++ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+
Sbjct: 189 TTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFH 247
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
RDGFVMGEGA VL+LEE EHA +R A+IYAE G + DA H+T P P+G+ A
Sbjct: 248 PKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGA 303
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-134
Identities = 123/280 (43%), Positives = 180/280 (64%), Gaps = 5/280 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +R+D+F+ Y L A + AL D G+ +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLK---PEDLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVMGEGAGVL+
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
LE EHAKKRGA+IYAE G ++DA+H+TEPHP+GK A
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGA 277
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 391 bits (1006), Expect = e-133
Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 13/304 (4%)
Query: 150 PDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPT 209
E T+ M RVVVTG+G+VSPLG ++ + L+ G SG+ +
Sbjct: 10 GTLEAQTQGPGSMT-LRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSA 68
Query: 210 KIAAEIK--------SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELD 261
K+ ++ F + V K ++MD+F+ + A +ALA+ G E
Sbjct: 69 KVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGW--APEAEQQ 126
Query: 262 KSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320
+ + ++ SG+GG +A+ ++++PF +PF +N+ + +++ + GP
Sbjct: 127 RERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPL 186
Query: 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-P 379
TACA S I +A I GEA+V+L GG++AA + LGGF A RALS ++ P
Sbjct: 187 GCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEP 246
Query: 380 TKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
+ASRP+D +RDGFVMGEGA ++++E L+HA RGA+ AE G T+DAYHMT D
Sbjct: 247 VRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDD 306
Query: 440 GKSA 443
G A
Sbjct: 307 GSGA 310
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 387 bits (998), Expect = e-132
Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 11/289 (3%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
MK +RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 1 MK-RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVA 59
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
P+ RMD+ + + ++A A G+ + LD ++ GV +GS +
Sbjct: 60 EGFGPRELDRMDRASQFAVACAREAFAASGLD---PDTLDPARVGVSLGSAVAAATSLER 116
Query: 282 AIEALR-------ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 334
L + ++ + ++ A +A +G GP +ST C + +
Sbjct: 117 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 176
Query: 335 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394
NA I G A+VM G +D + PI + F A RA + RN+DP ASRP+D RDGFV
Sbjct: 177 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFV 236
Query: 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+ EGA + +LE+ + A RGA+I+AE G + +AYHMT DG+
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREM 285
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-131
Identities = 86/292 (29%), Positives = 141/292 (48%), Gaps = 9/292 (3%)
Query: 155 TTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF--PTKIA 212
+ + VVVT + + + + + + LL G SGI +E T + KI
Sbjct: 2 SQPSTANGGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIG 61
Query: 213 AEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSG 272
+K + +RM G + G E +D + V++G+G
Sbjct: 62 GHLKDPVDS-HMGRLDMRRMSYVQRMGKLLGGQLWESAGSPE-----VDPDRFAVVVGTG 115
Query: 273 LGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSN 331
LGG + ++ + + +K++P V N +A++ + LG + +AC++ +
Sbjct: 116 LGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGS 175
Query: 332 FCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391
I +A I+ G+A+V +CGG + + + + F RA+S RN++P +ASRP+D +RD
Sbjct: 176 EAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRD 235
Query: 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
GFV GE ++L+E EHAK RGAK A G TSDA+HM P DG A
Sbjct: 236 GFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRA 287
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-130
Identities = 90/291 (30%), Positives = 132/291 (45%), Gaps = 6/291 (2%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTS-FPTKIAAEIKSFST 220
KRVV+TGMG V+ LG D L G + + + +D T++AA + F+
Sbjct: 3 GSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQ 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
K ++ M + +Y + A + ALAD G D + + GV GS G ++
Sbjct: 63 PADWPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIR 120
Query: 281 DAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
L + + + +++ G S+ACA+ + I A
Sbjct: 121 AFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYE 180
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
+I G+ +ML GG++ + F A S RN++P RP+D RDG V+GEGA
Sbjct: 181 NIAMGKQTLMLAGGAEEL-SGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGA 239
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG-KSAMSLRLN 449
L+LEE EHAK RGA I+AE G SD HMT+P AM L L
Sbjct: 240 ATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMARAMQLALE 290
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 375 bits (965), Expect = e-127
Identities = 88/300 (29%), Positives = 137/300 (45%), Gaps = 14/300 (4%)
Query: 148 VQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF 207
V + T VVVTG+ + + L + + + LL+ SGI ++ F
Sbjct: 15 VPRGSHMVT----GKAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEF 70
Query: 208 --PTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
P +I + D + +RM ++ + G E D ++
Sbjct: 71 DLPVRIGGHLL-EEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEV-----DTNRL 124
Query: 266 GVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324
V IG+GLG + + + +R K ++P V N +A + ++ +
Sbjct: 125 MVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPV 184
Query: 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKAS 383
+ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A
Sbjct: 185 SACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 244
Query: 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
RP+D +RDGFV GEG +LL+E EHAK RGA I A G S TSD +HM P P+G+ A
Sbjct: 245 RPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERA 304
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 374 bits (963), Expect = e-127
Identities = 112/298 (37%), Positives = 169/298 (56%), Gaps = 21/298 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTS--------------FPTK 210
+RVVVTG+G+V+PLG + + L++G GI + D +K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 211 IAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
+AA + S G L SK + F+ Y + A +AL D E +K + GV
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGV 118
Query: 268 LIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTA 326
IG G+G + +A + + ++++PF +P NM S ++M G+ GPN++ TA
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRP 385
CAT I +A I G+A+VM+ GG+++++ + + GF RALS + N P +ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 386 WDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+D +RDGFV+GEG+GV++LEE EHAK+RGAKIYAE G + DA+H+T+P DGK A
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGA 296
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-126
Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 7/290 (2%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 6 DDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAP 65
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ +L + D LTA AL D L GV+ + GG +
Sbjct: 66 DHIPGRLLPQTDPSTRLALTAADWALQDAKAD---PESLTDYDMGVVTANACGGFDFTHR 122
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L K ++ + + + +++ G GP+ ++ A + +A
Sbjct: 123 EFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRT 182
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG +++ GG D+A+ P G +A +S DP +A P+D G+V GEG
Sbjct: 183 IRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTA-TDPDRAYLPFDERAAGYVPGEGGA 240
Query: 401 VLLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN 449
+L+LE+ A+ RG Y E G + T D + + A+ L LN
Sbjct: 241 ILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPAGLERAIRLALN 290
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-123
Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 6/303 (1%)
Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
+ + + +RVVVTGMG+VS +G + +L E SGIS E + F
Sbjct: 7 HHMGTLEAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFR 66
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
++ + V + + + + A +A+AD G+TE+ E+ + G++
Sbjct: 67 CQVHG-APDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGII 122
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
+GSG + D+ + R K++ PF VP A ++ SA LA G NYSIS+AC
Sbjct: 123 MGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSAC 182
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
ATSN CI NA I G+ + M GG + + + S+ N+ P+ ASR +D
Sbjct: 183 ATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYD 242
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG-KSAMSL 446
NRDGFV+ GAGVL+LE+LE A RGAKIY E G TSD Y M P +G M +
Sbjct: 243 KNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAPSGEGAIRCMKM 302
Query: 447 RLN 449
L+
Sbjct: 303 ALS 305
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 362 bits (933), Expect = e-123
Identities = 100/289 (34%), Positives = 152/289 (52%), Gaps = 8/289 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K+ + M +Y + ++A+AD G++ + + + G++ GSG G + +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPE--AYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 285 ALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
A+R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMGEGAGV 401
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG-KSAMSLRLN 449
+++EELEHA RGA IYAE G TSD M P +G M + ++
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMH 286
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 343 bits (880), Expect = e-105
Identities = 63/312 (20%), Positives = 117/312 (37%), Gaps = 16/312 (5%)
Query: 146 VAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT 205
V V+ D E K + G + P+ ++ + G + +
Sbjct: 926 VIVEEDLEPFEASK---ETAEQFKHQHGDKVDIFEIPETG-EYSVKLLKGAT-LYIPKAL 980
Query: 206 SFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGKKALADGGIT--EDVMNELD 261
F +A +I + ++ + + ++D L++L + +A GIT ++ +
Sbjct: 981 RFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVH 1040
Query: 262 KSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321
S+ G GSG+GG+ + N M + + + + GP
Sbjct: 1041 VSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIK 1100
Query: 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND--- 378
+ ACATS + I+ G+A + + GG D G F +A S +
Sbjct: 1101 TPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEGSFEFGNMKATSNTLEEFEH 1159
Query: 379 ---PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE 435
P + SRP R+GF+ +GAG+ ++ + + A K G IY + +D +
Sbjct: 1160 GRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSV 1219
Query: 436 PHPDGKSAMSLR 447
P P + R
Sbjct: 1220 PAPGKGILTTAR 1231
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 278 bits (711), Expect = 1e-82
Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 12/271 (4%)
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGK 244
++ + G + + F +A +I + ++ + + ++D L++L +
Sbjct: 1162 EYSVKLLKGAT-LYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVV 1220
Query: 245 KALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFAT 302
+A GIT ++ + S+ G GSG+GG+ + N
Sbjct: 1221 EAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFI 1280
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 362
M + + + + GP + ACATS + I+ G+A + + GG D G
Sbjct: 1281 NTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEG 1339
Query: 363 LGGFVACRALSQRNND------PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
F +A S + P + SRP R+GF+ +GAG+ ++ + + A K G
Sbjct: 1340 SFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVP 1399
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGKSAMSLR 447
IY + +D + P P + R
Sbjct: 1400 IYGIVAMAATATDKIGRSVPAPGKGILTTAR 1430
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 4e-82
Identities = 59/268 (22%), Positives = 107/268 (39%), Gaps = 11/268 (4%)
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGK 244
+ G + + F +A +I + + + P + +++D LY+L +
Sbjct: 1137 QYTVRLRKGAT-LLIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVA 1195
Query: 245 KALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFAT 302
+AL GIT + + S+ G IGSG+GG + +
Sbjct: 1196 EALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFV 1255
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSD-----AA 357
M + + + L GP + ACAT+ + + I++G+A V L GG D +
Sbjct: 1256 NTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGS 1315
Query: 358 VIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417
+G + R +P + SRP R+GF+ +G GV ++ + A + G I
Sbjct: 1316 YEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPI 1375
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGKSAMS 445
Y S +D + P P G+ ++
Sbjct: 1376 YGIVAMTSTATDKIGRSVPAP-GQGVLT 1402
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 8e-14
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 18/186 (9%)
Query: 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNM 305
A+ DGGI L + GV +G DA EAL + + + + M
Sbjct: 89 AIVDGGI---NPASLRGTSTGVWVGV------SSSDASEALSRDPETLVGYSMIGCQRAM 139
Query: 306 GSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGG 365
+ L+ + GP+ +I TAC++S + +A I GE + + GG + + P
Sbjct: 140 MANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQ 199
Query: 366 FVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS 425
F+ LS R +D G+ E +LL + A+ ++YA
Sbjct: 200 FMKLGMLS-----QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILNAG 250
Query: 426 FTSDAY 431
+D
Sbjct: 251 TNTDGS 256
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 3e-11
Identities = 69/523 (13%), Positives = 128/523 (24%), Gaps = 172/523 (32%)
Query: 19 CMSFTCGSRDPHQPPSVLRRYTNNK-REGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGS 77
+V R K R+ L R K GV G SG
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----------SGK 163
Query: 78 SHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTAT----LNRRQRRLR 133
+ + + C Y F + NS T L + ++
Sbjct: 164 ---------TWVALDVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 134 LNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNN---LL 190
N +RS + + + + + +K K Y N +L
Sbjct: 211 PNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKP-------------------YENCLLVL 250
Query: 191 EGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALA 248
V F+ C KI LLT
Sbjct: 251 LNVQNAKAWNAFNLSC-----KI---------------------------LLTT-----R 273
Query: 249 DGGITEDVMNELDKSKCGVLIGSGLG---GMKVFYDAI----EALRISYKKMNPFCVPFA 301
+T+ + L + + + L NP +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--- 330
Query: 302 TTNMGSAMLAMDLG----WMGPNYS-ISTACATSNFCILNAANH--------IIRGEANV 348
++ + + L W N ++T +S +L A + + A++
Sbjct: 331 --SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 349 ------MLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
++ + + + + +L ++ + S P I +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIP-SIYLE----------- 434
Query: 403 LLEELE-----HAKKRGA-KIYAEFRGGSFTSD----------AYHMTEPHPDGKSAM-- 444
L +LE H I F +H+ + +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 445 SLRLNFS-VQMK------SLNGFG---------KFY--FISRN 469
+ L+F ++ K + N G KFY +I N
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 300 FATTNMGSAM---LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
T S +A LG GP ++ TAC++ + A + R E + L GG
Sbjct: 169 VGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTV 228
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
P F + L+ +P+ DGF + EGAGVL+L+ L A++ G
Sbjct: 229 MSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRP 283
Query: 417 IYAEFRGGSFTSD 429
+ A RG + D
Sbjct: 284 VLAVLRGSAVNQD 296
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 300 FATTNMGSAM---LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
T + ++ +G GP+ S+ TAC++S + A + +GE+++ + GG+
Sbjct: 147 SVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAV 206
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
P F RAL+ S+ + DGF EG ++LLE L A++ G +
Sbjct: 207 MATPGVFVDFSRQRALA-----ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHE 261
Query: 417 IYAEFRGGSFTSD 429
+ A RG + D
Sbjct: 262 VLAVVRGSALNQD 274
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 61/281 (21%), Positives = 104/281 (37%), Gaps = 60/281 (21%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE---------------------IETFDCT 205
VV+ GM P F++NL+ GV +++ + FD +
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDAS 65
Query: 206 SFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
F G V PK + MD + LL +A+ DGGI + L +
Sbjct: 66 FF--------------G-VHPKQAHTMDPQLRLLLEVTYEAIVDGGI---NPDSLRGTHT 107
Query: 266 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM---LAMDLGWMGPNYS 322
GV +G + EAL + + + + M L+ + GP+ +
Sbjct: 108 GVWVGVS------GSETSEALSRDPETLVGY---SMVGCQRAMMANRLSFFFDFRGPSIA 158
Query: 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKA 382
+ TAC++S + NA I G+ + GG + + P F+ LS P
Sbjct: 159 LDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGT 213
Query: 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRG 423
+ +D +G+ EG +LL + A+ ++YA
Sbjct: 214 CKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILN 250
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.92 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.91 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.9 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.89 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.89 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.89 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.88 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.88 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.88 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.87 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.87 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.86 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.86 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.85 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.85 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.83 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.82 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.82 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.82 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.81 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.81 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.8 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.8 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.7 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.69 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.65 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.48 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.46 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.41 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.41 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.41 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.4 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.4 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.38 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.35 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.32 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.3 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.27 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.21 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.2 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 99.18 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.17 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.16 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.13 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.11 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 99.0 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 98.99 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 98.92 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 98.91 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 98.81 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 98.79 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 98.76 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 98.67 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 98.61 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 98.25 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 95.8 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 95.76 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 94.48 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 94.07 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 93.81 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 93.27 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 91.46 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 89.03 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 88.92 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 88.48 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 85.93 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 83.96 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 83.32 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 82.29 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 82.21 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 80.45 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 80.29 |
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=491.89 Aligned_cols=301 Identities=42% Similarity=0.701 Sum_probs=277.1
Q ss_pred CCCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHH
Q 012130 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (470)
Q Consensus 161 ~~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L 240 (470)
...+++||||||||++|+|.++++||++|++|+++++++++|+...++.++++.+++||+.+||++++++.|||+++|++
T Consensus 14 ~~~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l 93 (427)
T 3ho9_A 14 CVSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGI 93 (427)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHH
T ss_pred CCCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCc
Q 012130 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (470)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gp 319 (470)
+++++||+|||++++ +++..++|||+|++.+++....+.+..+.. +...++|+.++....+.++++|+++||++||
T Consensus 94 ~aa~~AL~dAGl~~~---~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp 170 (427)
T 3ho9_A 94 VAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGP 170 (427)
T ss_dssp HHHHHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHCCCCcc---cccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCCCC
Confidence 999999999999876 678889999999999998887777766653 5667899999999999999999999999999
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceeccee
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGa 399 (470)
+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+..+..|++.|+|||.+++||++|||+
T Consensus 171 ~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~geGA 250 (427)
T 3ho9_A 171 SISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGA 250 (427)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEE
T ss_pred eecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCceeeeeE
Confidence 99999999999999999999999999999999999999999999999999999987777888999999999999999999
Q ss_pred EeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 400 galvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
++||||++++|+++|++||++|+|+++++||++++.|++.+.++. +.+++ .+|+|||+|||||.+
T Consensus 251 aavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT~~ 324 (427)
T 3ho9_A 251 GMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPA 324 (427)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred EEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEecCCcCCC
Confidence 999999999999999999999999999999999999977765544 33322 299999999999975
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-60 Score=491.84 Aligned_cols=296 Identities=33% Similarity=0.513 Sum_probs=271.3
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.+++++++ ||+.+|+++++++.|||+++|+++++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~-fd~~~~~~~~~~~~~d~~~~l~l~aa 79 (406)
T 2vba_A 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLIDRKVVRFMSDASIYAFLSM 79 (406)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCC-CCCTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEec-CChhhcCCHHHHHhcCHHHHHHHHHH
Confidence 36899999999999999999999999999999999998888788888899998 99999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccCC-CeeEEEEeccCCchhhHHHHHHHHH--hhhhcCCCccccccchhhHHHHHHHHhCCCCcc
Q 012130 244 KKALADGGITEDVMNELDK-SKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~-~rvGV~vG~~~g~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps 320 (470)
++||+|||++++ +++. +|+|||+|++.+++...++.+..+. .+...++|+.++....++++++|+++||++||+
T Consensus 80 ~~Al~dAg~~~~---~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp~ 156 (406)
T 2vba_A 80 EQAIADAGLSPE---AYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVN 156 (406)
T ss_dssp HHHHHHHTCCHH---HHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCE
T ss_pred HHHHHHCCCChh---HcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccCCCce
Confidence 999999999875 5666 8999999999999988777776664 344567888888889999999999999999999
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccC-CCCCCCCCCcCCCCCCCcceeccee
Q 012130 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDINRDGFVMGEGA 399 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~-~~~~~~~~~rpFd~~adG~v~GEGa 399 (470)
++|+++|+||++||++|+++|++|+||++||||+|.++++..+. |..+++|++ ++++|++.|||||+++|||++|||+
T Consensus 157 ~~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~gEGa 235 (406)
T 2vba_A 157 YSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGG 235 (406)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEE
T ss_pred eeeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccccCcCcCCCCceEeeceE
Confidence 99999999999999999999999999999999999988888777 999999985 4555889999999999999999999
Q ss_pred EeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh----ccccEEEEeeeccee
Q 012130 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN----FSVQMKSLNGFGKFY 464 (470)
Q Consensus 400 galvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~----~~i~~veahGtGT~l 464 (470)
+++|||++++|+++|++||++|+|+++++|++|++.|++.++...+.+++ .+|+|||+|||||.+
T Consensus 236 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p~~~~~~~ai~~al~~ag~dId~ve~HgtgT~~ 304 (406)
T 2vba_A 236 GMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPIDYLNSHGTSTPV 304 (406)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSCCSHHHHHHHHHHHTTCCSCCCEEECCCCSCHH
T ss_pred EEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCHHHHHHHHHHHHhhCCCCccEEEeeCccCcc
Confidence 99999999999999999999999999999999999999877776665554 289999999999975
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-59 Score=487.30 Aligned_cols=298 Identities=30% Similarity=0.399 Sum_probs=278.2
Q ss_pred CCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCC-CCCccccccccCCCCCCCCCccccccCCHHHHHHHH
Q 012130 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT-SFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~-~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~ 241 (470)
.|++|||||||+++|+|.+.++||++|.+|+++++++++|+.. .++.++.+.+++||+.+||++++++.|||+++|+++
T Consensus 4 ~m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~ 83 (412)
T 4ewg_A 4 SMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVR 83 (412)
T ss_dssp CCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHH
Confidence 4679999999999999999999999999999999999998876 788889999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCc
Q 012130 242 AGKKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (470)
Q Consensus 242 aa~eALedAG~-~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gp 319 (470)
++++||+|||+ +++ +++..++|||+|++.+++...++++..+.. +...++|+.++....+.++++|+++||++||
T Consensus 84 aa~~Al~dAGl~~~~---~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp 160 (412)
T 4ewg_A 84 ASELALADAGFAGDE---SISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGR 160 (412)
T ss_dssp HHHHHHHHHTCTTCG---GGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTCCSC
T ss_pred HHHHHHHhcCCCCcc---ccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCCCCC
Confidence 99999999999 554 678899999999999999888888777664 5567888888999999999999999999999
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceeccee
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGa 399 (470)
+++|+++|+||++||++|+++|++|+||++||||+|. ++|..+..|.+++.|+..+++|++.|||||.++|||++|||+
T Consensus 161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geGA 239 (412)
T 4ewg_A 161 IVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGA 239 (412)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCEE
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECeE
Confidence 9999999999999999999999999999999999999 999999999999999987788899999999999999999999
Q ss_pred EeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 400 galvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
++||||++++|+++|++||++|+|+++++||+|++.|++.++...+.+++. +|+|||+|||||.+
T Consensus 240 aavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~ai~~Al~~Agl~~~dId~ve~Hgtgt~~ 311 (412)
T 4ewg_A 240 ATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMARAMQLALEDAKLDANAIAYVNAHGTSTDR 311 (412)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCHH
T ss_pred EEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCcc
Confidence 999999999999999999999999999999999999998888777665542 99999999999975
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-59 Score=486.13 Aligned_cols=300 Identities=41% Similarity=0.713 Sum_probs=274.5
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~ 241 (470)
++|++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++++.+++||+.+++++++++.|||+++|+++
T Consensus 4 ~~m~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~ 83 (416)
T 1e5m_A 4 LEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVC 83 (416)
T ss_dssp --CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHH
T ss_pred CCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHHHHHH
Confidence 34678999999999999999999999999999999999999998899999999999999989999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCcc
Q 012130 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (470)
Q Consensus 242 aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps 320 (470)
++++||+|||++++ ++++.++|||+|++.+++..+++.+..+. .+....+|+.++....++++++|++.||++||+
T Consensus 84 aa~~Al~dAg~~~~---~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~ 160 (416)
T 1e5m_A 84 ASQQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPN 160 (416)
T ss_dssp HHHHHHHHHTCCCC---TTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHcCCChh---hcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCCCCce
Confidence 99999999999876 67788999999999998887777666554 355678999999889999999999999999999
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeE
Q 012130 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
++|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+.++++|++.|||||.++||+++|||++
T Consensus 161 ~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~geGaa 240 (416)
T 1e5m_A 161 NCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240 (416)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEE
T ss_pred eCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCceeeeeEE
Confidence 99999999999999999999999999999999999989999999999999999777778999999999999999999999
Q ss_pred eEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
++|||++++|+++|++||++|+|+++++|+++++.|+|++.++. +.+++ .+|+|||+|||||.+
T Consensus 241 avvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~ 313 (416)
T 1e5m_A 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPA 313 (416)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhHCCEEEEECCCCcC
Confidence 99999999999999999999999999999999999988765444 33332 299999999999975
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-58 Score=479.78 Aligned_cols=297 Identities=40% Similarity=0.674 Sum_probs=272.1
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
+++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++.+.+++||+.+++++++++.|||+++|+++++
T Consensus 27 ~~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa 106 (437)
T 2gqd_A 27 NKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAA 106 (437)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHH
T ss_pred CCCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998889999999999999988899999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||++++ ++++.++|||+|++.+++..+++.+..+. .+...++|+.++....++++++|++.||++||+++
T Consensus 107 ~~AL~dAGl~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~~~ 183 (437)
T 2gqd_A 107 REAVKDAQLDIN---ENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGA 183 (437)
T ss_dssp HHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSSEEC
T ss_pred HHHHHHcCCCcc---ccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCCCCceEE
Confidence 999999999876 67788999999999998877776666554 35567889888888899999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+||++||++|+++|++|+||+|||||+|.+++|..+.+|..+++|++ +++|++.|||||+++||+++|||++++
T Consensus 184 v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~G~v~geGaaav 262 (437)
T 2gqd_A 184 TVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGIL 262 (437)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSSCTTCTTCCSBCBBCEEEEE
T ss_pred ecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC-CCCCccccCCCCCCCCCceeeceEEEE
Confidence 9999999999999999999999999999999999899999999999999985 345889999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
|||++++|+++|++||++|+|+++++|+++++.|+|+++++. +.+++ .+|+|||+|||||.+
T Consensus 263 vL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~ 333 (437)
T 2gqd_A 263 VIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPV 333 (437)
T ss_dssp EEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred EECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhhCCEEEEECCCCcC
Confidence 999999999999999999999999999999999988766544 33322 299999999999975
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=483.85 Aligned_cols=299 Identities=35% Similarity=0.487 Sum_probs=272.6
Q ss_pred CCCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHH
Q 012130 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (470)
Q Consensus 161 ~~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L 240 (470)
++.+++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++++. .+||+.+||++++++.|||+++|++
T Consensus 19 ~~~m~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~-~~fd~~~~i~~~~~~~~d~~~~l~~ 97 (428)
T 3mqd_A 19 PGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLVDRRAMRFHGRGTAWNH 97 (428)
T ss_dssp ---CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEEC-CCCCHHHHSCTGGGTTCCHHHHHHH
T ss_pred CCCCCCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCcccccCCCcccccc-cCCChhhcCCHHHHhhCCHHHHHHH
Confidence 456789999999999999999999999999999999999988877888888887 5899999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCc
Q 012130 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (470)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gp 319 (470)
+++++||+|||++++ +++..++|||+|++.+++..+.+++..+. .+...++|+.+++...++++++|++.||++||
T Consensus 98 ~aa~~Al~dAGl~~~---~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp 174 (428)
T 3mqd_A 98 IAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGI 174 (428)
T ss_dssp HHHHHHHHHHTCCHH---HHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHcCCChh---HccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCCCCc
Confidence 999999999999976 67889999999999988887777766655 46677899999999999999999999999999
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCCcceecce
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~adG~v~GEG 398 (470)
+++|+++|+||++||++|+++|++|+||++||||+|. +++.....|..+++++.. +++|++.|||||.++|||++|||
T Consensus 175 ~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~-~s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gEG 253 (428)
T 3mqd_A 175 NYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCED-LDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGG 253 (428)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBCE
T ss_pred eeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeecc-cchHHHHHHHHhhhhcccccCCcccccCcccCCCCCcccccc
Confidence 9999999999999999999999999999999999999 566667779999999865 56789999999999999999999
Q ss_pred eEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh----ccccEEEEeeeccee
Q 012130 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN----FSVQMKSLNGFGKFY 464 (470)
Q Consensus 399 agalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~----~~i~~veahGtGT~l 464 (470)
+++||||++++|+++|++||++|+|+++++||++++.|++.++..++.+++ .+|+|||+|||||.+
T Consensus 254 AaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P~~~~~~~ai~~Al~gl~~dId~ve~HgtgT~~ 323 (428)
T 3mqd_A 254 AGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAPSGEGAIRCMKMALSTVTSKIDYINPHATSTPA 323 (428)
T ss_dssp EEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCSHHHHHHHHHHHTTCCSCCCEEECCCCSCHH
T ss_pred eEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCHHHHHHHHHHHHhCCccccCEEEEeCCCCCC
Confidence 999999999999999999999999999999999999998888877766554 389999999999975
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=483.35 Aligned_cols=296 Identities=31% Similarity=0.481 Sum_probs=267.5
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCC-CCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW-VAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~f-i~p~ea~~mdp~~rl~L~aa 243 (470)
++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++.+++ +||+.+| |++++++.|||+++|+++++
T Consensus 3 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~-~fd~~~~~i~~~~~~~~d~~~~l~l~aa 81 (424)
T 1tqy_A 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEA-DFDPVAEGFGPRELDRMDRASQFAVACA 81 (424)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCHHHHTCCHHHHHHSCHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCCCcccccCCcceeEEe-ccCHhhcCCCHHHHHhcCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999988888888888 8999999 99999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH---hhhhcCCCccccccchhhHHH----HHHHHhCC
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR---ISYKKMNPFCVPFATTNMGSA----MLAMDLGW 316 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~a~----~is~~~gl 316 (470)
++||+|||++++ +++..|+|||+|++.+++...++.+..+. .+....+++.++...+++.++ +|+++||+
T Consensus 82 ~~AL~dAG~~~~---~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl 158 (424)
T 1tqy_A 82 REAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGA 158 (424)
T ss_dssp HHHHHHHTCCTT---TCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTC
T ss_pred HHHHHHCCCCch---hcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCC
Confidence 999999999876 67788999999999999888777776654 234456677666666665555 99999999
Q ss_pred CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceec
Q 012130 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (470)
Q Consensus 317 ~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~G 396 (470)
+||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++++..+.+|++.|||||.++||+++|
T Consensus 159 ~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~g 238 (424)
T 1tqy_A 159 EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238 (424)
T ss_dssp CSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTCCCBCEE
T ss_pred CCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCCCceeee
Confidence 99999999999999999999999999999999999999998999999999999999977777899999999999999999
Q ss_pred ceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 397 EGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
||++++|||++++|+++|++||++|+|+++++||++++.|+|+++++. +.+++ .+|+|||+|||||.+
T Consensus 239 eGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~ 315 (424)
T 1tqy_A 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQ 315 (424)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHH
T ss_pred cceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCccCcC
Confidence 999999999999999999999999999999999999999998765444 33322 299999999999975
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=474.99 Aligned_cols=299 Identities=40% Similarity=0.715 Sum_probs=276.4
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~ 241 (470)
|.+++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++++++++||+.+||++++++.|||+++|+++
T Consensus 1 M~~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~ 80 (413)
T 3o04_A 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIA 80 (413)
T ss_dssp CCCCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGTSCHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhccCHHHHhhCCHHHHHHHH
Confidence 34679999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcc
Q 012130 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (470)
Q Consensus 242 aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps 320 (470)
++++||+|||++++ ++++.++|||+|++.+++..++..+..+.. +....+|+.++....++++++|++.||++||+
T Consensus 81 Aa~~AL~dAGl~~~---~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~ 157 (413)
T 3o04_A 81 SAEMAVQDSGLVID---DSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGIN 157 (413)
T ss_dssp HHHHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHcCCChh---HcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCCCCcc
Confidence 99999999999876 778899999999999999888877776653 56678899999999999999999999999999
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeE
Q 012130 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+.+|..+++++. +.+|++.|+|||.+++|+++|||++
T Consensus 158 ~~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~g~~~gdGAa 236 (413)
T 3o04_A 158 STTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAG 236 (413)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSCCTTBTTCCSBCBBCEEE
T ss_pred eeecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC-CCCCCCCcCCCcCCCCCceEeccEE
Confidence 999999999999999999999999999999999999999999999999999984 4458899999999999999999999
Q ss_pred eEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
++|||++++|+++|++||++|+|+++++||+|++.|.|.+.++. +.+++ .+|+|||+|||||.+
T Consensus 237 avvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ve~HgtgT~~ 309 (413)
T 3o04_A 237 IVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPY 309 (413)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHH
T ss_pred EEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcc
Confidence 99999999999999999999999999999999999999875444 33322 299999999999985
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-58 Score=477.39 Aligned_cols=296 Identities=25% Similarity=0.367 Sum_probs=273.6
Q ss_pred CCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHH
Q 012130 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~a 242 (470)
..++|+|||||+++|+|.+.++||++|.+|+++++++++|+...++.++++++++||+.+|+++++++.|||+++|++++
T Consensus 7 ~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~a 86 (415)
T 1tqy_B 7 DDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTA 86 (415)
T ss_dssp ---CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHH
T ss_pred CCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999888888999999999999889999999999999999999
Q ss_pred HHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcce
Q 012130 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (470)
Q Consensus 243 a~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (470)
+++||+|||++++ +++..++|||+|++.+++...++.+..+.. +...++|+.+++...+.++++|+++||++||++
T Consensus 87 a~~AL~dAGl~~~---~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~ 163 (415)
T 1tqy_B 87 ADWALQDAKADPE---SLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSS 163 (415)
T ss_dssp HHHHHHHTTCCGG---GSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCE
T ss_pred HHHHHHHcCCCcc---ccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCCCceE
Confidence 9999999999976 677889999999999999888877776653 556789999999999999999999999999999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
+|+++|+||++||++|+++|++| ||++||||+|.++++..+.+|..+++|+. +++|++.|+|||.+++|+++|||+++
T Consensus 164 ~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~-~~~~~~~~~pfd~~~~G~~~geGaaa 241 (415)
T 1tqy_B 164 ALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGAI 241 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC-CSCGGGSCCTTSTTCCCBCBBCEEEE
T ss_pred eecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC-CCCCCCCcCCCCCCCCCcceeeeEEE
Confidence 99999999999999999999999 99999999999999999999999999986 55578899999999999999999999
Q ss_pred EeeccchhHHhcCC-eeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 402 LLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 402 lvLe~l~~A~~~G~-~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
+|||++++|+++|+ +||++|+|+++++||++++.|++ ++..++.+++. +|+|||+|||||.+
T Consensus 242 vvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~-~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~ 311 (415)
T 1tqy_B 242 LVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA-GLERAIRLALNDAGTGPEDVDVVFADGAGVPE 311 (415)
T ss_dssp EEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC-SHHHHHHHHHHHHTCCGGGCCEEECCCCCSHH
T ss_pred EEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH-HHHHHHHHHHHHcCCCHhHCCEEEEeCCCCcC
Confidence 99999999999999 99999999999999999999999 87776655542 99999999999964
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-58 Score=475.99 Aligned_cols=297 Identities=42% Similarity=0.735 Sum_probs=273.3
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++++++ +||+.+|+++++++.|||+++|+++++
T Consensus 1 M~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~fd~~~~~~~~~~~~~d~~~~l~~~aa 79 (408)
T 1j3n_A 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAA 79 (408)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeccccCcccCccceEEEE-ccChhhcCCHHHHHhcCHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999888899999999 899999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||++++ +++..++|||+|++.+++..+.+.+..+. .+...++|+.++....++++++|++.||++||+++
T Consensus 80 ~~AL~dAGl~~~---~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~~ 156 (408)
T 1j3n_A 80 QLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSST 156 (408)
T ss_dssp HHHHHHHTCCGG---GSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCC
T ss_pred HHHHHHcCCCcc---ccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCCCCceeC
Confidence 999999999976 67788999999999999887777666554 35667899988888999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+..++.|++.|||||.++||+++|||++++
T Consensus 157 v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGaaav 236 (408)
T 1j3n_A 157 VVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVL 236 (408)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEE
T ss_pred ccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeEEEE
Confidence 99999999999999999999999999999999998999999999999999977777889999999999999999999999
Q ss_pred eeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
|||++++|+++|++||++|+|+++++|+++++.|+|.++++. +.+++ .+|+|||+|||||.+
T Consensus 237 vL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~ 307 (408)
T 1j3n_A 237 VLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPV 307 (408)
T ss_dssp EEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred EEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcc
Confidence 999999999999999999999999999999999988766544 33222 299999999999975
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=475.69 Aligned_cols=298 Identities=41% Similarity=0.690 Sum_probs=273.3
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCcccccccc-------CCCCCCCCCccccccCCH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------SFSTDGWVAPKLSKRMDK 234 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-------~fd~~~fi~p~ea~~mdp 234 (470)
..|++|||||||+++|+|.++++||++|++|+++|+++++|+.+.++.++++.++ .||+.+||++++++.|||
T Consensus 7 ~~~~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~i~~~~~~~~d~ 86 (428)
T 3kzu_A 7 HHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDP 86 (428)
T ss_dssp --CCCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCBSSSSTTCBCGGGTSCHHHHTTSCH
T ss_pred ccccceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCCccccccCcCceeeEecccccccccCChhhcCCHHHHHhCCH
Confidence 4578999999999999999999999999999999999999999988888888887 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccc-cCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHH
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNE-LDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~-~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
+++|+++++++||+|||++++ + ++..++|||+|++.+++....+++..+.. +...++|+.++....++.+++|++
T Consensus 87 ~~~l~l~aa~~AL~dAGl~~~---~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~ 163 (428)
T 3kzu_A 87 FIVYAVGAADQALDDAGWHPE---NDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSI 163 (428)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC---SHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChh---hhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHH
Confidence 999999999999999999876 4 66778999999999998888777776654 566789999999999999999999
Q ss_pred HhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCC
Q 012130 313 DLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRD 391 (470)
Q Consensus 313 ~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~ad 391 (470)
.||++||+++|+++|+|+++||++|+++|++|+||++||||+|.+++|..+..|...+.|+.. +++|++.|+|||.++|
T Consensus 164 ~lgl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~ 243 (428)
T 3kzu_A 164 KHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRD 243 (428)
T ss_dssp HHTCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTTCC
T ss_pred HcCCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999965 5668899999999999
Q ss_pred cceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeecc
Q 012130 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGK 462 (470)
Q Consensus 392 G~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT 462 (470)
|+++|||++++|||++++|+++|++||++|+|+++++||++++.|++.+.++. +.+++ .+|+|||+|||||
T Consensus 244 G~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT 323 (428)
T 3kzu_A 244 GFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST 323 (428)
T ss_dssp SBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSS
T ss_pred ceeecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHeeEEEecCCcc
Confidence 99999999999999999999999999999999999999999999988855443 33322 2999999999999
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=474.02 Aligned_cols=300 Identities=43% Similarity=0.673 Sum_probs=273.6
Q ss_pred CCCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHH
Q 012130 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (470)
Q Consensus 161 ~~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L 240 (470)
.+.|++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++.+.+++||+.+|+++++++.|||+++|++
T Consensus 19 ~m~m~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l 98 (430)
T 1ox0_A 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYAL 98 (430)
T ss_dssp SCCCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHH
T ss_pred cccCCCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHH
Confidence 35578999999999999999999999999999999999999999889999999999999988899999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCc
Q 012130 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (470)
Q Consensus 241 ~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gp 319 (470)
+++++||+|||++++ +++..++|||+|++.+++....+.+..+. .+...++|+.++....++++++|++.||++||
T Consensus 99 ~aa~~AL~dAG~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp 175 (430)
T 1ox0_A 99 YAAQEAVNHANLDVE---ALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGV 175 (430)
T ss_dssp HHHHHHHHHTTCCTT---TSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHcCCChh---hcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcCCCc
Confidence 999999999999876 67788999999999998877776665554 45667899999999999999999999999999
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceeccee
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGa 399 (470)
+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+.+|..+++|+. ++.|++.|||||+++||+++|||+
T Consensus 176 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~-~~~p~~~~~pFd~~~~g~~~geGA 254 (430)
T 1ox0_A 176 CKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGS 254 (430)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CSSTTSSSCTTBTTCCSBCBCCEE
T ss_pred eEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC-CCCCCCCCCCCCCCCCCccccceE
Confidence 9999999999999999999999999999999999999999999999999999985 345889999999999999999999
Q ss_pred EeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 400 galvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
+++|||++++|+++|++||++|+|+++++|+++++.|++++.++. +.+++ .+|+|||+|||||.+
T Consensus 255 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~ 328 (430)
T 1ox0_A 255 GMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPA 328 (430)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHH
T ss_pred EEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHhCcCHHHcCEEEEeCCcCcc
Confidence 999999999999999999999999999999999999987755443 33332 299999999999975
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=478.08 Aligned_cols=297 Identities=36% Similarity=0.595 Sum_probs=269.9
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccC------CCCCCCCCccccccCCHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS------FSTDGWVAPKLSKRMDKFML 237 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~------fd~~~fi~p~ea~~mdp~~r 237 (470)
+++|||||||+++|+|.++++||++|.+|+++++++++|+...++.++++.+++ ||+.+|+++++++.|||+++
T Consensus 20 ~~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp ECCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 468999999999999999999999999999999999999988888899998877 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCc-ccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 238 YLLTAGKKALADGGITE-DVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 238 l~L~aa~eALedAG~~~-~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
|+++++++||+|||+++ + +++..++|||+|++.+++..+.+.+..+. .+...++|+.+++...++++++|++.||
T Consensus 100 l~l~aa~~AL~dAGl~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 176 (438)
T 2iwz_A 100 MAIGAAELAMKDSGWHPQS---EADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYK 176 (438)
T ss_dssp HHHHHHHHHHHHHTCCCCS---HHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCcc---cccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhC
Confidence 99999999999999986 5 55667899999999999887777766654 3556788988888889999999999999
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCccee
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~ 395 (470)
++||+++|+++|+||++||++|+++|++|+||+|||||+|.+++|..+.+|..+++|++. .+|++.|||||.+++|+++
T Consensus 177 l~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~p~~~~~pfd~~~~G~~~ 255 (438)
T 2iwz_A 177 LKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN-SDPKLACRPFHPKRDGFVM 255 (438)
T ss_dssp CCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-SCTTTSCCTTCTTCCSBCB
T ss_pred CCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC-CCCCcccccCCCCCCCEEe
Confidence 999999999999999999999999999999999999999998999999999999999853 2478999999999999999
Q ss_pred cceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 396 GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
|||+++||||++++|+++|++||++|+|+++++|+++++.|++++.++. +.+++ .+|+|||+|||||.+
T Consensus 256 geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~ 333 (438)
T 2iwz_A 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPL 333 (438)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred eceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCCCcc
Confidence 9999999999999999999999999999999999999999987665444 33332 299999999999975
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-58 Score=557.63 Aligned_cols=283 Identities=22% Similarity=0.332 Sum_probs=253.8
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCC-CCCCCCCC-cccccc---ccCCCCCCC-CCccccccCCHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSFP-TKIAAE---IKSFSTDGW-VAPKLSKRMDKFML 237 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~~~-~~~~g~---i~~fd~~~f-i~p~ea~~mdp~~r 237 (470)
|++||||||||++|+|.++++||++|.+|++++++.+ +|+...+. ....|. ++.||+.|| |+|+|++.||||||
T Consensus 1 m~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~fd~~~f~i~~~ea~~~dpq~r 80 (2512)
T 2vz8_A 1 MEEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLR 80 (2512)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECSSSSCTTGGGCCSEEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCCCcccccccccCcccceecCCcccCCHhhcCCCHHHHHhcCHHHH
Confidence 4689999999999999999999999999999999985 46654221 234454 456999999 99999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC
Q 012130 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (470)
Q Consensus 238 l~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~ 317 (470)
++|+++||||||||++++ .++++++|||+|++.++|... +......++++.+++...+++++||||+|||+
T Consensus 81 l~l~~~~eAle~Ag~~~~---~~~~~~~gv~~G~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~ 151 (2512)
T 2vz8_A 81 MLLEVTYEAIVDGGINPA---SLRGTSTGVWVGVSSSDASEA------LSRDPETLVGYSMIGCQRAMMANRLSFFFDFK 151 (2512)
T ss_dssp HHHHHHHHHHGGGTCCGG---GGTTCSCEEEEEECCCHHHHH------TTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCChh---hcCCCCeEEEEEeccHHHHHH------HhcCccccCcceecccchhHHHHHHHHHhCCC
Confidence 999999999999999976 778899999999997765422 22234567888899999999999999999999
Q ss_pred CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecc
Q 012130 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (470)
Q Consensus 318 Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GE 397 (470)
||+++|+||||||++|||+||++|++|+||+|||||+|.+++|..+.+|+++++|| |+++|||||+++|||++||
T Consensus 152 Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls-----~~g~c~~Fd~~adG~~~gE 226 (2512)
T 2vz8_A 152 GPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS-----QDGTCRSFDAEGTGYCRAE 226 (2512)
T ss_dssp SCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC-----TTCSCCSSSTTCCCBCBBC
T ss_pred CCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC-----CCCCCCCCCCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred eeEeEeeccchhHHhcCCeeeEEEEEEeeccCCC---CCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 398 GagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~---~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
|+|+||||++++|+ +|||+|+|+++|+||+ ++|+|++.+|..++.+++. +|+|||+|||||.+
T Consensus 227 G~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P~~~~q~~~i~~al~~ag~~p~~i~yveaHGTgT~~ 299 (2512)
T 2vz8_A 227 AVVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKV 299 (2512)
T ss_dssp EEEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSCCHHHHHHHHHTTSGGGSSCTTSCCEEECCCCCCTT
T ss_pred eEEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEeecCCCCC
Confidence 99999999999996 5999999999999995 6999999999888776653 89999999999976
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=467.25 Aligned_cols=297 Identities=30% Similarity=0.468 Sum_probs=269.5
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCC--CCCCCccccccccCCCCCCCCCccccccCCHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~--~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~ 239 (470)
..+++||||||||++|+|.++++||++|.+|+++++++++|+ ...++.++++.+++ |+.+|+++++++.|||+++|+
T Consensus 9 ~~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~d~~~~l~ 87 (416)
T 2wge_A 9 GGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMGRLDMRRMSYVQRMG 87 (416)
T ss_dssp TSSCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSS-CGGGGCCHHHHHHSCHHHHHH
T ss_pred CCCCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCC-chhhhCCHHHHHhcCHHHHHH
Confidence 345789999999999999999999999999999999999987 55678888999988 888889999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCC
Q 012130 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (470)
Q Consensus 240 L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G 318 (470)
++++++||+|||+. .++.+++|||+|++.+++...++.+..+. .+...++|+.++....+..+++|++.||++|
T Consensus 88 l~aa~~AL~dAG~~-----~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~g 162 (416)
T 2wge_A 88 KLLGGQLWESAGSP-----EVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARA 162 (416)
T ss_dssp HHHHHHHHHHTTCC-----CCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCC-----ccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhccCC
Confidence 99999999999993 56778999999999999987777776654 3556789998899999999999999999999
Q ss_pred cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecce
Q 012130 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 319 ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEG 398 (470)
|+++|+++|+||++||++|+++|++|+||++||||+|.++.+..+..|..++.++..+.+|++.|||||+++||+++|||
T Consensus 163 p~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG 242 (416)
T 2wge_A 163 GVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA 242 (416)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred CcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence 99999999999999999999999999999999999999999989999999999997777789999999999999999999
Q ss_pred eEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 399 agalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
++++|||++++|+++|++||++|+|+++++|+++++.|++.+.++. +.+++ .+|+|||+|||||.+
T Consensus 243 aaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~HgtgT~~ 317 (416)
T 2wge_A 243 GALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPI 317 (416)
T ss_dssp EEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHH
T ss_pred eEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEECCCCCcC
Confidence 9999999999999999999999999999999999999977654443 33332 299999999999975
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=467.19 Aligned_cols=297 Identities=29% Similarity=0.462 Sum_probs=268.8
Q ss_pred CCCCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCC--CCCCCccccccccCCCCCCCCCccccccCCHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~--~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~ 239 (470)
..+++|||||||+++|+|.++++||++|++|+++++++++|+ ...++.++++++++ |+.+|+++++++.|||+++|+
T Consensus 25 ~~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~-d~~~~~~~~~~~~~d~~~~l~ 103 (434)
T 2gp6_A 25 KAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLE-EFDHQLTRIELRRMGYLQRMS 103 (434)
T ss_dssp TTSCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSC-CSTTSSCHHHHHTCCHHHHHH
T ss_pred CCCCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCC-chhhhCCHHHHHhCCHHHHHH
Confidence 345789999999999999999999999999999999999987 56678888899987 888889999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCC
Q 012130 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (470)
Q Consensus 240 L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~G 318 (470)
++++++||+|||+. .+++.++|||+|++.+++....+.+..+.. +...++|+.+++...++++++|+++||++|
T Consensus 104 l~aa~~ALedAG~~-----~~~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl~G 178 (434)
T 2gp6_A 104 TVLSRRLWENAGSP-----EVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKA 178 (434)
T ss_dssp HHHHHHHHHHTTCC-----CCCTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHhcCCC-----ccCCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcCCC
Confidence 99999999999993 567889999999999999887777766543 455678888888889999999999999999
Q ss_pred cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcc-cccCCCCCCCCCCcCCCCCCCcceecc
Q 012130 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASRPWDINRDGFVMGE 397 (470)
Q Consensus 319 ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~-~Ls~~~~~~~~~~rpFd~~adG~v~GE 397 (470)
|+++|+++|+|+++||++|+++|++|+||++||||+|.++.|..+..|+.++ +++..+..|++.|+|||.+++|+++||
T Consensus 179 p~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~~g~v~gd 258 (434)
T 2gp6_A 179 GVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGE 258 (434)
T ss_dssp CEECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTCCCCCBBC
T ss_pred CeEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccCCCcceec
Confidence 9999999999999999999999999999999999999999999999999999 888777778999999999999999999
Q ss_pred eeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeeccee
Q 012130 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 398 GagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~l 464 (470)
|++++|||++++|+++|++||++|+|+++++||++++.|++.+.++. +.+++ .+|+|||+|||||.+
T Consensus 259 GAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~ 334 (434)
T 2gp6_A 259 GGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQV 334 (434)
T ss_dssp CEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHTTCCTTTEEEEECCCCSCHH
T ss_pred ceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcc
Confidence 99999999999999999999999999999999999999977755443 33332 199999999999975
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=504.54 Aligned_cols=283 Identities=23% Similarity=0.375 Sum_probs=251.6
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCC-CCCCCCC-Cccccc---cccCCCCCCC-CCccccccCCHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSF-PTKIAA---EIKSFSTDGW-VAPKLSKRMDKFML 237 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~-~~~~~~~-~~~~~g---~i~~fd~~~f-i~p~ea~~mdp~~r 237 (470)
+++||||||||++|+|.++++||++|.+|++++++++ +|+...+ .....+ +++.||+.+| |+|+|++.||||||
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~r 82 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLR 82 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHHH
Confidence 5789999999999999999999999999999999985 4543222 122233 4556999999 99999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC
Q 012130 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (470)
Q Consensus 238 l~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~ 317 (470)
|+++++|+||||||++++ ++++.++|||+|++.++|.. .+......++++.+++...++++++|+++|||+
T Consensus 83 L~leaa~eALedAGi~~~---~i~~~~~Gv~vG~~~~d~~~------~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 153 (965)
T 3hhd_A 83 LLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSGSETSE------ALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR 153 (965)
T ss_dssp HHHHHHHHHHHHTTCCGG---GGTTSCCEEEEEECCCHHHH------HHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCChH---HcCCceeEEEEeccchhHHH------HHhcCccccCcccccccccchHHHHHHHHhCCC
Confidence 999999999999999987 78899999999998765532 222344567778888888999999999999999
Q ss_pred CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecc
Q 012130 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (470)
Q Consensus 318 Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GE 397 (470)
||+++|+|+||||++||++||++|++|+||+|||||+|.+++|..+..|+++++|| |+++|||||.++|||++||
T Consensus 154 GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls-----~~g~~~~Fd~~adG~~~gE 228 (965)
T 3hhd_A 154 GPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSE 228 (965)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC-----TTCCCCTTBTTCCSBCBBC
T ss_pred CCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC-----CCCccccchhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred eeEeEeeccchhHHhcCCeeeEEEEEEeeccCCC---CCCCcCcCchhHHHHHhhc-------cccEEEEeeeccee
Q 012130 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPHPDGKSAMSLRLNF-------SVQMKSLNGFGKFY 464 (470)
Q Consensus 398 GagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~---~~t~P~p~g~~~~~~~~~~-------~i~~veahGtGT~l 464 (470)
|+|+||||++++|+ +||++|+|+++|+||+ +++.|++++|..++.+++. +|+|||+|||||.+
T Consensus 229 GagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~Agl~p~dIdyvEaHgTgT~~ 301 (965)
T 3hhd_A 229 GVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKV 301 (965)
T ss_dssp EEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCTT
T ss_pred eEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHhccccccCCCCCC
Confidence 99999999999996 4999999999999996 4899999888888766652 99999999999965
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-56 Score=462.95 Aligned_cols=294 Identities=38% Similarity=0.654 Sum_probs=262.1
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCC--------------CCCCcccccccc------CCCCCCCC
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--------------TSFPTKIAAEIK------SFSTDGWV 224 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~--------------~~~~~~~~g~i~------~fd~~~fi 224 (470)
++||||||||++|+|.++++||++|++|+++++++++|+. ..++.+++++++ +||+.+|+
T Consensus 1 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~~~~ 80 (431)
T 2ix4_A 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (431)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CcEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCChhhhhccccccccccccccCcccceeEEeccccccccCChhhcC
Confidence 3799999999999999999999999999999999998873 345667778877 79988888
Q ss_pred CccccccCCHHHHHHHHHHHHHHHhCCC-CcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccc
Q 012130 225 APKLSKRMDKFMLYLLTAGKKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFAT 302 (470)
Q Consensus 225 ~p~ea~~mdp~~rl~L~aa~eALedAG~-~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~ 302 (470)
+++ .|||+++|+++++++||+|||+ +++ +++..++|||+|++.+++..+.+.+..+.. +...++|+.++...
T Consensus 81 ~~~---~~d~~~~l~l~aa~~AL~dAG~~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 154 (431)
T 2ix4_A 81 NSK---AVANFIGYAVCAADEALRDAEWLPTE---EEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKIL 154 (431)
T ss_dssp CST---TCCHHHHHHHHHHHHHHHHTTCCCCS---HHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHC
T ss_pred Chh---hCCHHHHHHHHHHHHHHHHcCCCCcc---ccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcch
Confidence 876 8999999999999999999999 765 566779999999999988877777666553 45667888888888
Q ss_pred hhhHHHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCC
Q 012130 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTK 381 (470)
Q Consensus 303 ~~~~a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~ 381 (470)
.++++++|++.||++||+++|+++|+||++||++|+++|++|+||++||||+|.++++..+.+|..+++|+++ +.+|++
T Consensus 155 ~~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~ 234 (431)
T 2ix4_A 155 VNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQE 234 (431)
T ss_dssp TTHHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGG
T ss_pred hHHHHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999854 456789
Q ss_pred CCcCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccc
Q 012130 382 ASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSV 452 (470)
Q Consensus 382 ~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i 452 (470)
.|||||.+++|+++|||++++|||++++|+++|++||++|+|+++++||++++.|++.++++. +.+++ .+|
T Consensus 235 ~~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dI 314 (431)
T 2ix4_A 235 ASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQI 314 (431)
T ss_dssp SCCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGC
T ss_pred ccccCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHc
Confidence 999999999999999999999999999999999999999999999999999999977665444 33322 299
Q ss_pred cEEEEeeeccee
Q 012130 453 QMKSLNGFGKFY 464 (470)
Q Consensus 453 ~~veahGtGT~l 464 (470)
+|||+|||||.+
T Consensus 315 d~ve~HgtgT~~ 326 (431)
T 2ix4_A 315 DYVNAHATSTPI 326 (431)
T ss_dssp CEEECCCCSCHH
T ss_pred CEEEEeCCcCcc
Confidence 999999999975
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-55 Score=463.12 Aligned_cols=298 Identities=35% Similarity=0.571 Sum_probs=272.7
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCcccccccc--------CCCCCCCCCccccccCCHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK--------SFSTDGWVAPKLSKRMDKF 235 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~--------~fd~~~fi~p~ea~~mdp~ 235 (470)
+++|+|||||+++|+|.++++||++|.+|+++++++++|+...++.++++.++ +||+.+||++++++.|||+
T Consensus 23 ~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~g~v~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 102 (451)
T 4ddo_A 23 TLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRF 102 (451)
T ss_dssp -CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCHHHHTTSSCCEEECCCCTTTCTTTCCCGGGTSCHHHHTTSCHH
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceEccccccccccccchhhhCCHHHHhhCCHH
Confidence 47899999999999999999999999999999999999988888888888887 7999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCccccccc-CCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHH
Q 012130 236 MLYLLTAGKKALADGGITEDVMNEL-DKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~-~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
++|+++++++||+|||++++ ++ +..++|||+|++.+++....+++..+.. +...++|+.++....++++++|++.
T Consensus 103 ~~L~l~Aa~~AL~dAGl~~~---~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~ 179 (451)
T 4ddo_A 103 IQMAMVAADEALAEAGWAPE---AEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIK 179 (451)
T ss_dssp HHHHHHHHHHHHHHHTCCCC---SHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChh---hcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHH
Confidence 99999999999999999876 55 6789999999999999888887776654 5567899999999999999999999
Q ss_pred hCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCCc
Q 012130 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDG 392 (470)
Q Consensus 314 ~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~adG 392 (470)
||++||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|...++++.. +++|.+.|+|||.++||
T Consensus 180 lgl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~g 259 (451)
T 4ddo_A 180 HRFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDG 259 (451)
T ss_dssp HTCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCS
T ss_pred hcCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999965 55678899999999999
Q ss_pred ceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHH--HHHhh-------ccccEEEEeeecce
Q 012130 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAM--SLRLN-------FSVQMKSLNGFGKF 463 (470)
Q Consensus 393 ~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~--~~~~~-------~~i~~veahGtGT~ 463 (470)
+++|||++++|||++++|+++|++||++|+|+++++|+++++.|.+++.++. +.+++ .+|+|||+|||||.
T Consensus 260 ~v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~ 339 (451)
T 4ddo_A 260 FVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTP 339 (451)
T ss_dssp BCBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCH
T ss_pred cEEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCcCc
Confidence 9999999999999999999999999999999999999999999987755443 33332 29999999999997
Q ss_pred e
Q 012130 464 Y 464 (470)
Q Consensus 464 l 464 (470)
+
T Consensus 340 ~ 340 (451)
T 4ddo_A 340 V 340 (451)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-55 Score=494.27 Aligned_cols=286 Identities=22% Similarity=0.356 Sum_probs=251.9
Q ss_pred CCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCC--C-CCCCCC-----------Ccccccccc---CCCCCCC-C
Q 012130 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIE--T-FDCTSF-----------PTKIAAEIK---SFSTDGW-V 224 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~--~-~~~~~~-----------~~~~~g~i~---~fd~~~f-i 224 (470)
.++||||||||++|+| +++++||++|.+|++++++++ + |+...+ +.+++++++ .||+.+| |
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i 84 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSYVDKGGFLDDAAGFDAEFFGV 84 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTTSTTCBSCCEEBCCSCSSEECHHHHTC
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccccCCCcccceeEEeCCccccCHhhcCC
Confidence 4689999999999999 999999999999999999985 3 553222 345566664 5999999 9
Q ss_pred CccccccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchh
Q 012130 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTN 304 (470)
Q Consensus 225 ~p~ea~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 304 (470)
+|+|++.|||+++|+++++|+||||||++++ ++++.++|||+|++.++|..... ....++++.+++...+
T Consensus 85 ~~~ea~~mdp~~rL~leaa~eALedAGi~~~---~i~~~~~gV~vG~~~~~~~~~~~-------~~~~~~~~~~~g~~~~ 154 (915)
T 2qo3_A 85 SPREAAAMDPQQRLLLETSWELVENAGIDPH---SLRGTATGVFLGVAKFGYGEDTA-------AAEDVEGYSVTGVAPA 154 (915)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHTTCCGG---GGTTBCCEEEEECCCCCTTTTCC----------CTTCHHHHTTCHH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHcCCChH---HcCCcceEEEEEecCchHHhhhc-------cccccccccccccccc
Confidence 9999999999999999999999999999986 77889999999999887754321 1234577778888899
Q ss_pred hHHHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCc
Q 012130 305 MGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (470)
Q Consensus 305 ~~a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~r 384 (470)
+++++|++.|||+||+++|+++|+||++||++||++|++|+||+|||||+|.+++|..+..|..+++|+ +++.||
T Consensus 155 ~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls-----~~g~~~ 229 (915)
T 2qo3_A 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA-----ADGRSK 229 (915)
T ss_dssp HHHHHHHHHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBC-----SSCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccC-----CCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred CCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCC--CCcCcCchhHHHHHhhc-------cccEE
Q 012130 385 PWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHM--TEPHPDGKSAMSLRLNF-------SVQMK 455 (470)
Q Consensus 385 pFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~--t~P~p~g~~~~~~~~~~-------~i~~v 455 (470)
|||.++|||++|||+|+||||++++|+++|++||++|+|+++|+||++. +.|++.+|..++.+++. +|+||
T Consensus 230 ~Fd~~adG~v~gEGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~Agl~p~dId~v 309 (915)
T 2qo3_A 230 AFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAV 309 (915)
T ss_dssp TTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred cccCCCCceeecCceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCcEE
Confidence 9999999999999999999999999999999999999999999999864 55565666666555442 99999
Q ss_pred EEeeeccee
Q 012130 456 SLNGFGKFY 464 (470)
Q Consensus 456 eahGtGT~l 464 (470)
|+|||||.+
T Consensus 310 e~HgtgT~~ 318 (915)
T 2qo3_A 310 EAHGTGTAL 318 (915)
T ss_dssp ECCCCCCTT
T ss_pred EecCCCCcc
Confidence 999999986
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-55 Score=491.68 Aligned_cols=286 Identities=23% Similarity=0.343 Sum_probs=250.7
Q ss_pred CCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCC--C-CCCCCCCcccccccc---CCCCCCC-CCccccccCCHH
Q 012130 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIE--T-FDCTSFPTKIAAEIK---SFSTDGW-VAPKLSKRMDKF 235 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~--~-~~~~~~~~~~~g~i~---~fd~~~f-i~p~ea~~mdp~ 235 (470)
.++||||||||++|+| .++++||++|.+|++++++++ | |+. ....+++++++ .||+.+| |+|+|++.||||
T Consensus 38 ~~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~-~~~~~~~~~l~~~~~fD~~~f~i~~~ea~~mdp~ 116 (917)
T 2hg4_A 38 GEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEP-DPDARLGGMLAAAGDFDAGFFGISPREALAMDPQ 116 (917)
T ss_dssp HCCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCC-CSSCCEEBCCTTTTEECTGGGTCCHHHHHHSCHH
T ss_pred CCCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCC-CCCcceeeEecCccccChhhcCCCHHHHHhcCHH
Confidence 4689999999999987 789999999999999999885 3 432 22345666664 6999999 999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
++|+++++|+||||||++++ ++++.+||||+|++.++|..... .....++++.+++...++++++|++.||
T Consensus 117 ~rl~leaa~eALedAGi~~~---~i~~~~~gV~vG~~~~d~~~~~~------~~~~~~~~~~~~g~~~~~~a~ris~~lg 187 (917)
T 2hg4_A 117 QRIMLEISWEALERAGHDPV---SLRGSATGVFTGVGTVDYGPRPD------EAPDEVLGYVGTGTASSVASGRVAYCLG 187 (917)
T ss_dssp HHHHHHHHHHHHHHTTCCGG---GGTTSCEEEEEEECCCCCSCCTT------SSCGGGGGGHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCChH---HcCCcceEEEEEeCCchhhhhhh------cCccccCcccccccccchHHHHHHHhcC
Confidence 99999999999999999986 77889999999999877653211 1223456666777888999999999999
Q ss_pred CCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCccee
Q 012130 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (470)
Q Consensus 316 l~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~ 395 (470)
|+||+++|+++|+||++||++||++|++|+||+|||||+|.+++|..+..|..+++|+ |++.|||||.++|||++
T Consensus 188 l~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls-----~~g~~~pFd~~adG~~~ 262 (917)
T 2hg4_A 188 LEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFGL 262 (917)
T ss_dssp CCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC-----TTSCCCTTBTTCCCBCB
T ss_pred CCCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC-----CccccCcccccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCC--CCCcCcCchhHHHHHhh-------ccccEEEEeeeccee
Q 012130 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH--MTEPHPDGKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 396 GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~--~t~P~p~g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
|||+|+||||++++|+++|++||++|+|+++|+||++ ++.|++.+|..++.+++ .+|+|||+|||||.+
T Consensus 263 gEGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~Agl~p~dId~veaHgtgT~~ 340 (917)
T 2hg4_A 263 AEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRL 340 (917)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCTT
T ss_pred cceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEeeccCCCcc
Confidence 9999999999999999999999999999999999986 45566566655555444 299999999999975
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=456.58 Aligned_cols=319 Identities=22% Similarity=0.261 Sum_probs=255.9
Q ss_pred hhhhhhhhhhccccccCCCCceEeeCCCCChHHHHHHHhhhhhhhhccccccccccCCCCccccccCCCCCCCCcEEEEe
Q 012130 92 EPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTG 171 (470)
Q Consensus 92 el~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaItG 171 (470)
+++|++...+|++ + +.+.+||| |+|..+. +...........+... ..... ..-+....++|.|+.
T Consensus 1067 ~~~~~i~~~tgir-~----~~~~~fd~-~~p~~~~-------~~~~~~~~~~~~~~~~-~~~~a-~~~~~~~~~~~~i~~ 1131 (1878)
T 2uv9_A 1067 KYEKYILEHSGIR-L----IEPELFGG-YDPNRKQ-------LLQEVVIEQDLEPFEA-SKEQA-EEFKREHGDKVEIFE 1131 (1878)
T ss_dssp HHHHHHHHTSEEE-E----CCGGGGTT-CCGGGEE-------EEEEEECCSCCCCEEE-CHHHH-HHHHHHHGGGEEEEE
T ss_pred HHHHHHHHhcCCC-C----CcccccCC-CCHHHHH-------HHHHhhcccCCCcccc-Chhhh-hhccccCCCCeeEee
Confidence 6799999999999 7 77789999 8885542 1111111111000000 00000 000011246788873
Q ss_pred ecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCcccccccc-CCCCCCC-CCccccccCCHHHHHHHHHHHHHHHh
Q 012130 172 MGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALAD 249 (470)
Q Consensus 172 mg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~p~ea~~mdp~~rl~L~aa~eALed 249 (470)
..+.++||++|.+|++++.+.. ..++..++|.|+ +||+.+| |++++++.|||+++|+|+++++||+|
T Consensus 1132 -------~~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL~~ 1200 (1878)
T 2uv9_A 1132 -------IPETGQYTVRLRKGATLLIPKA----LQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLS 1200 (1878)
T ss_dssp -------CTTTSCEEEEECTTCEEEEEEE----ECCSCCEEEECCTTCCHHHHTCCHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred -------CCChHHHHHHHHcCCCeeeecC----CCCcceEEEEeCCCCCHhhcCCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999852 346678899997 7999999 99999999999999999999999999
Q ss_pred CCCC-ccc-ccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH-HhCCCCcceeecCC
Q 012130 250 GGIT-EDV-MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSISTA 326 (470)
Q Consensus 250 AG~~-~~~-~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~-~~gl~Gps~tV~tA 326 (470)
|||+ +.. .+.++..++|||+|++.+++..+...+...... ..+.++.++....|+++++|++ +||++||+++|++|
T Consensus 1201 AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~-~~v~~~~~~~~~~n~~aa~vs~~~lg~~GP~~tv~tA 1279 (1878)
T 2uv9_A 1201 SGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLD-KPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGA 1279 (1878)
T ss_dssp TTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTT-CCCCSCTTGGGSHHHHHHHHHHHTCCCCCCBCCBCCG
T ss_pred CCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhc-CCCCchhhhcchHHHHHHHHHHHhcCCCCCeEEEcCc
Confidence 9997 541 112678899999999999987766555432211 3367788888899999999999 59999999999999
Q ss_pred CchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC------CCCCCCCCcCCCCCCCcceecceeE
Q 012130 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 327 CsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~------~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
|+||++||+.||+.|++|+||+|||||+|. +++..+..|..+++++.. +.+|++.|||||.++|||++|||||
T Consensus 1280 CASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r~Gfv~gEGag 1358 (1878)
T 2uv9_A 1280 CATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCG 1358 (1878)
T ss_dssp GGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTCCCBCBBCEEE
T ss_pred chHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCccCCCCCcccceeE
Confidence 999999999999999999999999999998 789999999999999842 4468999999999999999999999
Q ss_pred eEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCc
Q 012130 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p 438 (470)
++||+++++|+++|++|||+|+|+++|+|+.+.+.|.|
T Consensus 1359 ~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paP 1396 (1878)
T 2uv9_A 1359 VQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAP 1396 (1878)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCC
T ss_pred EEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCC
Confidence 99999999999999999999999999999987666665
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=453.55 Aligned_cols=319 Identities=21% Similarity=0.266 Sum_probs=253.6
Q ss_pred hhhhhhhhhhhccccccCCCCceEeeCCCCChHHHHHHHhhhhhhhh-ccccccccccCCCCccccccCCCCCCCCcEEE
Q 012130 91 FEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRV-TRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVV 169 (470)
Q Consensus 91 vel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaI 169 (470)
.+++|++...+|++ + +.+.+||+ ++|... .. +... +.....+... ..+.+.. -.....++|+|
T Consensus 1091 ~~~~~~i~~~tgir-~----~~~~~fd~-~~p~~~----~~--l~~~~~~~~~~~~~~---~~~~a~~-~~~~~~~~~~I 1154 (1887)
T 2uv8_A 1091 AKYETSILEHSGIR-L----IEPELFNG-YNPEKK----EM--IQEVIVEEDLEPFEA---SKETAEQ-FKHQHGDKVDI 1154 (1887)
T ss_dssp HHHHHHHHHTSSEE-E----CCGGGGTT-CCTTSE----EE--EEEEECSSCCCCEEE---CHHHHHH-HHHHHGGGEEE
T ss_pred HHHHHHHHHhcCCC-C----CCcccCCC-CCHHHH----HH--HHHHHhccccccccc---Cccchhh-HhhcCCCceeE
Confidence 36799999999999 7 77789999 888431 11 1110 0100000000 0000000 00112467888
Q ss_pred EeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCcccccccc-CCCCCCC-CCccccccCCHHHHHHHHHHHHHH
Q 012130 170 TGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKAL 247 (470)
Q Consensus 170 tGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~p~ea~~mdp~~rl~L~aa~eAL 247 (470)
+++ .+.++||++|.+|++++.+.. ..++..++|.|+ +||+.+| |++++++.|||+++|+|+++++||
T Consensus 1155 ~~~-------~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL 1223 (1887)
T 2uv8_A 1155 FEI-------PETGEYSVKLLKGATLYIPKA----LRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAF 1223 (1887)
T ss_dssp EEC-------TTTSCEEEEECTTCEEEEEEE----ECCSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred eec-------CchHHHHHHHHcCCceeeccc----CCCCccEEEEECCCCChhhcCCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 852 467899999999999999863 246678899997 7999999 999999999999999999999999
Q ss_pred HhCCCC-ccc-ccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH-hCCCCcceeec
Q 012130 248 ADGGIT-EDV-MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD-LGWMGPNYSIS 324 (470)
Q Consensus 248 edAG~~-~~~-~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~-~gl~Gps~tV~ 324 (470)
+||||. +.. ...++..++|||+|++.+++......+...... ..+.++.++....|+++++|++. ||++||+++|+
T Consensus 1224 ~dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~-~~v~~~~~~~~~~n~~aa~is~~~lgl~GP~~tv~ 1302 (1887)
T 2uv8_A 1224 IASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKD-EPVQNDILQESFINTMSAWVNMLLISSSGPIKTPV 1302 (1887)
T ss_dssp HHTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTT-CCCCTTHHHHHSTTHHHHHHHHHTTCCCSCCCCCC
T ss_pred HHcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhc-CCCCcchhhcchhhHHHHHHHHHHcCCccceEEee
Confidence 999995 541 112678899999999999987766554432211 23567777778889999999994 99999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC------CCCCCCCCcCCCCCCCcceecce
Q 012130 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 325 tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~------~~~~~~~~rpFd~~adG~v~GEG 398 (470)
+||+||++||+.||+.|++|+||+|||||+|. ++|..+..|..+++++.. +.+|++.|||||.+++||++|||
T Consensus 1303 tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd~~r~Gfv~gEG 1381 (1887)
T 2uv8_A 1303 GACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQG 1381 (1887)
T ss_dssp CGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTBTTCCSBCBBCE
T ss_pred cccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCcccCCCcccccc
Confidence 99999999999999999999999999999998 789999999999999842 34588999999999999999999
Q ss_pred eEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCc
Q 012130 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438 (470)
Q Consensus 399 agalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p 438 (470)
||++||+++++|+++|++|||+|+|+++|+|+.+.+.|.|
T Consensus 1382 ag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paP 1421 (1887)
T 2uv8_A 1382 AGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1421 (1887)
T ss_dssp EEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCC
T ss_pred eEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCC
Confidence 9999999999999999999999999999999987665555
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-49 Score=445.20 Aligned_cols=319 Identities=21% Similarity=0.260 Sum_probs=249.2
Q ss_pred hhhhhhhhhhccccccCCCCceEeeCCCCChHHHHHHHhhhhhhhhccccccccccCCCCccccccCCCCCCCCcEEEEe
Q 012130 92 EPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTG 171 (470)
Q Consensus 92 el~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VaItG 171 (470)
+++|++...+|++ + +.+.+||+ ++|... .. +..... .....+...+. ..+.. -+....++|+|++
T Consensus 893 ~~~~~i~~~tGiR-l----~~~~~fd~-~~p~~~----~~--L~e~~l-~~d~~~~~~s~-~~a~~-~~~~~~d~v~I~~ 957 (1688)
T 2pff_A 893 KYETSILEHSGIR-L----IEPELFNG-YNPEKK----EM--IQEVIV-EEDLEPFEASK-ETAEQ-FKHQHGDKVDIFE 957 (1688)
T ss_dssp TSSSSSSSGGGTT-T----SSSSCCSS-SSSSCC----SS--SEECCC-CCCCSCCCCCC-CCTTH-HHHHHHHSCTTSC
T ss_pred HHHHHHHHhcCCC-C----CCCccCCC-CCHHHH----hH--hhHHhc-CCCCcccccCh-hhhhh-ccccCCCCeEEec
Confidence 5689999999999 7 77789999 888431 11 111000 00000000000 00000 0000123454442
Q ss_pred ecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCcccccccc-CCCCCCC-CCccccccCCHHHHHHHHHHHHHHHh
Q 012130 172 MGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALAD 249 (470)
Q Consensus 172 mg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~-~fd~~~f-i~p~ea~~mdp~~rl~L~aa~eALed 249 (470)
-.+.++||++|.+|++++.+. ...++..++|.++ +||+.+| |++++++.|||+++|+++++++||+|
T Consensus 958 -------i~~~eefW~~L~~G~~~i~p~----~~~~~~~vaG~Ip~gFD~~~fGIs~~ea~~mDP~qrLaLeAa~EALed 1026 (1688)
T 2pff_A 958 -------IPETGEYSVKLLKGATLYIPK----ALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIA 1026 (1688)
T ss_dssp -------CCCCCSSSCCCCCCTTCCCCC----CCCEECCSSCSCCCCCCCCCSSCCTTTBTTBCSSTTHHHHHHHHHHTT
T ss_pred -------CCCHHHHHHHHHcCCCEEecC----CCCCCceEEEEECCCCChhhCCCCHHHHhccCHHHHHHHHHHHHHHHH
Confidence 246789999999999999883 3356678889997 7999999 99999999999999999999999999
Q ss_pred CCCC-ccc-ccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH-HhCCCCcceeecCC
Q 012130 250 GGIT-EDV-MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSISTA 326 (470)
Q Consensus 250 AG~~-~~~-~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~-~~gl~Gps~tV~tA 326 (470)
|||+ +.. ...++..++|||+|++.+++......+..... ...+.++.++....|.++++|++ +||++||+++|++|
T Consensus 1027 AGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~-~~~v~~~~l~~~~~nt~Aa~Vs~~~LGl~GPs~TVdtA 1105 (1688)
T 2pff_A 1027 SGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFK-DEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1105 (1688)
T ss_dssp TTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSS-CCCCCSTTHHHHCTHHHHHHHHHSSCCCCCCCCCCCCT
T ss_pred cCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHh-cCCCCcchhccccHHHHHHHHHHHHcCCcCCeEEecCC
Confidence 9997 541 11267889999999999998876665442211 12356777777888999999999 79999999999999
Q ss_pred CchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC------CCCCCCCCcCCCCCCCcceecceeE
Q 012130 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 327 CsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~------~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
||||++||+.||++|++|+||+|||||+|. +++..+..|..+++++.. +.+|++.|||||.+++||++|||||
T Consensus 1106 CASSL~AL~lA~~aIrsGeaDvaLVGGvE~-msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rdGfv~GEGAG 1184 (1688)
T 2pff_A 1106 CATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAG 1184 (1688)
T ss_dssp TTTTHHHHHHHHHHHHTTTCSCBCCCCCCC-CCTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCCCCCCCSCCE
T ss_pred CchHHHHHHHHHHHHHCCCCCEEEEeeecc-CCHHHHHHHHhccccccChhhhhcCCChhhccCcCccCCCCCccccceE
Confidence 999999999999999999999999999998 688889999999999853 3458999999999999999999999
Q ss_pred eEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCc
Q 012130 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 438 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p 438 (470)
++||+++++|+++|++|||+|+|+++++|+.+.+.|.|
T Consensus 1185 avVLesle~Al~~G~~IyAvI~GsavnsDg~~~SipAP 1222 (1688)
T 2pff_A 1185 IQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP 1222 (1688)
T ss_dssp EEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCC
T ss_pred EEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCCCC
Confidence 99999999999999999999999999999986655444
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=428.56 Aligned_cols=256 Identities=23% Similarity=0.325 Sum_probs=221.6
Q ss_pred CCcccccccc-CCCCCCC-CCccccccCCHHHHHHHHHHHHHHHhCCCCccccc-ccCCCeeEEEEeccCCchhhHHHHH
Q 012130 207 FPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAI 283 (470)
Q Consensus 207 ~~~~~~g~i~-~fd~~~f-i~p~ea~~mdp~~rl~L~aa~eALedAG~~~~~~~-~~~~~rvGV~vG~~~g~~~~~~~~~ 283 (470)
++.+++|+++ +||+.+| |++++++.|||+++|+++++++||+||||+++.+. ..++.++|||+|++.+++....+.+
T Consensus 2617 ~~~~~gG~i~d~FD~~~fgIs~rea~~mDp~~rL~l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~ 2696 (3089)
T 3zen_D 2617 LSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMY 2696 (3089)
T ss_dssp CSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHH
T ss_pred ccceEEEEcCCCCChhhcCCCHHHHHhcCHHHHHHHHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHH
Confidence 4677889994 7999999 99999999999999999999999999999986332 2367899999999999988877766
Q ss_pred HHHHhhhhcCCCccccccchhhHHHHHHH-HhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh
Q 012130 284 EALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 362 (470)
Q Consensus 284 ~~~~~~~~~~~p~~~~~~~~~~~a~~is~-~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~ 362 (470)
..+..+....++ .++..+.|+.++++++ +||++||+++|+++||||++||++||++|++|+||+|||||+|. +++..
T Consensus 2697 ~~~~~~~~~~~~-~~~~~~~~~~aa~is~~~lGl~GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-ls~~~ 2774 (3089)
T 3zen_D 2697 HGNLLGRAKPND-ILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-LTLEA 2774 (3089)
T ss_dssp HHHHTTCCCCTT-HHHHTSTTHHHHHHHHHTTCCCSCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHH
T ss_pred HHHhcCCCccch-hhccccccHHHHHHHHHHcCCCCCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-cCHHH
Confidence 655443333333 3566778899999997 45999999999999999999999999999999999999999999 89999
Q ss_pred hHHhhhcccccC------CCCCCCCCCcCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCc
Q 012130 363 LGGFVACRALSQ------RNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436 (470)
Q Consensus 363 ~~~f~~~~~Ls~------~~~~~~~~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P 436 (470)
+.+|..+++|+. .+.+|++.|||||+++|||++|||+|++|||++++|+++|++||++|.|+++|+||++++.|
T Consensus 2775 ~~~f~~~~als~~~~~~~~~~sp~~~crpFd~~~dG~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~ 2854 (3089)
T 3zen_D 2775 IIGFGDMAATADTEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIP 2854 (3089)
T ss_dssp HHHHHHHTCBCCHHHHHHTTCCTTTSCCSSBTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSS
T ss_pred HHHHHHhhhhhcchhhhhccCCcccccCccccCCCCEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCcc
Confidence 999999999873 35678999999999999999999999999999999999999999999999999999987777
Q ss_pred CcC---------chhHHHHHhh-------ccccEEEEeeeccee
Q 012130 437 HPD---------GKSAMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 437 ~p~---------g~~~~~~~~~-------~~i~~veahGtGT~l 464 (470)
.|. +|..++.+++ .+|+|||+|||||.+
T Consensus 2855 aP~~g~~~a~~~~q~~ai~~AL~~AGl~p~DIdyVEaHGTGT~l 2898 (3089)
T 3zen_D 2855 APGLGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLA 2898 (3089)
T ss_dssp CCCCGGGGGSTTGGGSHHHHHHHTTTCCGGGEEEEECCCCCCTT
T ss_pred CCchhHHhHhhhhHHHHHHHHHHHcCCCHHHeeEEEEecCCccc
Confidence 764 4544544443 299999999999975
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=228.84 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhC-CCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 235 FMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 235 ~~rl~L~aa~eALedA-G~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
.++|+++++++||+|+ |++++ +++ +|++|+..+++. ..+.++.+|++.
T Consensus 30 ~~~L~~~a~~~AL~dA~gl~~~---~id----~v~~g~~~~~~~------------------------~~~~~a~~ia~~ 78 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPG---EVE----DVIWGCVNQTLE------------------------QGWNIARMASLM 78 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGG---GEE----EEEEECSSBSBT------------------------TTTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCCHH---HCC----EEEEEeeccccC------------------------CCCcHHHHHHHH
Confidence 4689999999999999 99876 333 799998754321 124578999999
Q ss_pred hCC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhhhHHh-h------------hccc------
Q 012130 314 LGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGLGGF-V------------ACRA------ 371 (470)
Q Consensus 314 ~gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~~~~f-~------------~~~~------ 371 (470)
||+ +||+++|+++|+|+++||++|+++|++|+||++||||+|.+.. |.....| . .+++
T Consensus 79 lgl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~ 158 (390)
T 1wdk_C 79 TQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLG 158 (390)
T ss_dssp SSSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHH
T ss_pred cCCCCCccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHH
Confidence 999 8999999999999999999999999999999999999997632 3321111 0 0122
Q ss_pred ----ccCC----------------------CCC--C------CCCCcCCCCC---------------------CCcce--
Q 012130 372 ----LSQR----------------------NND--P------TKASRPWDIN---------------------RDGFV-- 394 (470)
Q Consensus 372 ----Ls~~----------------------~~~--~------~~~~rpFd~~---------------------adG~v-- 394 (470)
+++. +++ | .+.|+|||.+ +||++
T Consensus 159 ~~~g~s~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~ 238 (390)
T 1wdk_C 159 KMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238 (390)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEec
Confidence 2211 000 2 1233799999 89999
Q ss_pred -----ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccEEEEeeecc
Q 012130 395 -----MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQMKSLNGFGK 462 (470)
Q Consensus 395 -----~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~veahGtGT 462 (470)
++||+++|||+++++|+++|++||++|+|++.+++... +...++...+.+++ .+|+|+|+|++.|
T Consensus 239 ~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~p~---~~~~~~~~a~~~al~~Agl~~~dId~ve~~d~f~ 315 (390)
T 1wdk_C 239 GTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPA---IMGYGPVPATQKALKRAGLNMADIDFIELNEAFA 315 (390)
T ss_dssp GGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCGG---GGGGTHHHHHHHHHHHHTCCGGGCCEEEECCSBH
T ss_pred hhcCcccchhheeEEecHHHHHHcCCCccEEEEEEEEeccChh---hcchhHHHHHHHHHHHcCCChhhCcEEEeccCCH
Confidence 99999999999999999999999999999999986421 12234444433333 2999999999987
Q ss_pred e
Q 012130 463 F 463 (470)
Q Consensus 463 ~ 463 (470)
+
T Consensus 316 ~ 316 (390)
T 1wdk_C 316 A 316 (390)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-24 Score=220.21 Aligned_cols=191 Identities=18% Similarity=0.205 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
++|+++++++||+|||++++ +++ +|++|+..+++. ...++.++++.||
T Consensus 31 ~~L~~~a~~~Al~dAGl~~~---~id----~v~~g~~~~~~~-------------------------~~~~a~~ia~~lg 78 (397)
T 1wl4_A 31 QDLGSTVIKEVLKRATVAPE---DVS----EVIFGHVLAAGC-------------------------GQNPVRQASVGAG 78 (397)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCTTS-------------------------CSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCCC-------------------------CCHHHHHHHHHcC
Confidence 67999999999999999876 333 689998754321 1246889999999
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhhh--------------H-----H----h--h
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGL--------------G-----G----F--V 367 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~~--------------~-----~----f--~ 367 (470)
+ +||+++|+++|+|++.||++|+++|++|+||++||||+|.+.. |... . + | .
T Consensus 79 l~~~~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (397)
T 1wl4_A 79 IPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC 158 (397)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCC
T ss_pred CCCCccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccc
Confidence 9 8999999999999999999999999999999999999998653 2210 0 0 0 1
Q ss_pred hcccccC---------------------------------------------------CCCCCCC---------CCcC-C
Q 012130 368 ACRALSQ---------------------------------------------------RNNDPTK---------ASRP-W 386 (470)
Q Consensus 368 ~~~~Ls~---------------------------------------------------~~~~~~~---------~~rp-F 386 (470)
.++.++. ..+.+.. .||| |
T Consensus 159 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf 238 (397)
T 1wl4_A 159 HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYF 238 (397)
T ss_dssp BHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSS
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 1222210 0111111 5999 9
Q ss_pred CCCCCcce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcC--chhHHHHHhh-------c
Q 012130 387 DINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD--GKSAMSLRLN-------F 450 (470)
Q Consensus 387 d~~adG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~--g~~~~~~~~~-------~ 450 (470)
|.++||++ ++||+++|||+++++|+++|++||++|+|++.+++ .|++. ++...+.+++ .
T Consensus 239 d~~~~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~ 313 (397)
T 1wl4_A 239 LTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVTKAGWSLE 313 (397)
T ss_dssp CCSSCCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred CCCCCCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHHHcCCCHH
Confidence 99999999 99999999999999999999999999999999984 35443 4433333332 2
Q ss_pred cccEEEEeeecce
Q 012130 451 SVQMKSLNGFGKF 463 (470)
Q Consensus 451 ~i~~veahGtGT~ 463 (470)
+|+|+|+|-.-++
T Consensus 314 dId~ie~~d~f~~ 326 (397)
T 1wl4_A 314 DVDIFEINEAFAA 326 (397)
T ss_dssp GCCEEEECCSBHH
T ss_pred HCCEEEEecccHH
Confidence 9999999987664
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=217.08 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhCC----CCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHH
Q 012130 236 MLYLLTAGKKALADGG----ITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (470)
Q Consensus 236 ~rl~L~aa~eALedAG----~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is 311 (470)
++|+++++++||+|+| ++++ +++ +|++|+..+++ ..+..+.+++
T Consensus 36 ~~La~~Aa~~Al~~Ag~~~~l~~~---~id----~v~~g~~~~~~-------------------------~~~~~a~~va 83 (393)
T 1afw_A 36 DYLLYNFLNEFIGRFPEPLRADLN---LIE----EVACGNVLNVG-------------------------AGATEHRAAC 83 (393)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTCGG---GCC----CEEEECSSSBG-------------------------GGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHH---HCC----EEEEEecCCCC-------------------------CCChHHHHHH
Confidence 5699999999999999 9876 344 59999875432 1245688999
Q ss_pred HHhCC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhh-----------h--HHh-----hhcc
Q 012130 312 MDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG-----------L--GGF-----VACR 370 (470)
Q Consensus 312 ~~~gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~-----------~--~~f-----~~~~ 370 (470)
+.+|+ +||+++|+++|+|+++||++|+++|++|++|++||||+|.+.. |.. + .+| ..++
T Consensus 84 ~~lGl~~~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (393)
T 1afw_A 84 LASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMG 163 (393)
T ss_dssp HHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCHH
T ss_pred HHcCCCCCceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhHH
Confidence 99999 8999999999999999999999999999999999999997543 210 0 011 1112
Q ss_pred cccC---------------------C----C--------------------CCCCCC------------CcC-CCCCCCc
Q 012130 371 ALSQ---------------------R----N--------------------NDPTKA------------SRP-WDINRDG 392 (470)
Q Consensus 371 ~Ls~---------------------~----~--------------------~~~~~~------------~rp-Fd~~adG 392 (470)
.+++ . | .++|+. +|| ||.++ |
T Consensus 164 ~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~-G 242 (393)
T 1afw_A 164 ITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR-G 242 (393)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----C
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-C
Confidence 1100 0 0 013443 456 98766 8
Q ss_pred ce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccEEEEe
Q 012130 393 FV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQMKSLN 458 (470)
Q Consensus 393 ~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~veah 458 (470)
++ ++||+++|||+++++|+++|++||++|+|++.++|..+++ ..++...+.+++ .||+|+|+|
T Consensus 243 ~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~~~---~~~~~~a~~~al~~Agl~~~dId~ve~h 319 (393)
T 1afw_A 243 TTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIM---GVGPAYAIPKVLEATGLQVQDIDIFEIN 319 (393)
T ss_dssp CCBTTTBCCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCGGGG---GGHHHHHHHHHHHHHTCCGGGCSEEEEC
T ss_pred CeechhcCcccchhheeeEecHHHHHHcCCCccEEEEEEEEeccChhhc---chhHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 88 7999999999999999999999999999999999853222 224433333332 299999999
Q ss_pred eecce
Q 012130 459 GFGKF 463 (470)
Q Consensus 459 GtGT~ 463 (470)
++.|.
T Consensus 320 ~~ft~ 324 (393)
T 1afw_A 320 EAFAA 324 (393)
T ss_dssp CSBHH
T ss_pred ccCHH
Confidence 99985
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=207.74 Aligned_cols=196 Identities=18% Similarity=0.147 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHhC-CCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 234 p~~rl~L~aa~eALedA-G~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
+.+.|+++++++||+|+ |++++ +++ +|++|+..+++. .....+.++++
T Consensus 26 ~~~~L~~~a~~~Al~~a~gi~~~---~Id----~v~~g~~~~~~~------------------------~~~~~a~~~~~ 74 (387)
T 3goa_A 26 RAEDLSAHLMRSLLARNPSLTAA---TLD----DIYWGCVQQTLE------------------------QGFNIARNAAL 74 (387)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCGG---GCC----EEEEECSCCSBT------------------------TTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCHH---HcC----EEEEEcccCCcc------------------------cccHHHHHHHH
Confidence 45779999999999999 99987 444 699998643211 01235788999
Q ss_pred HhCC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhh---------------------------
Q 012130 313 DLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL--------------------------- 363 (470)
Q Consensus 313 ~~gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~--------------------------- 363 (470)
.+|+ .+|+++|+++|+|+++||++|+++|++|+||.+||+|+|.+......
T Consensus 75 ~~Gl~~~~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 154 (387)
T 3goa_A 75 LAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEML 154 (387)
T ss_dssp HTTCCTTSCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHH
T ss_pred HcCCCCCCcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHH
Confidence 9999 68999999999999999999999999999999999999976543211
Q ss_pred -----------HHhh---h--------cccccCC--------------CCCCCCCCcC-------------CCC------
Q 012130 364 -----------GGFV---A--------CRALSQR--------------NNDPTKASRP-------------WDI------ 388 (470)
Q Consensus 364 -----------~~f~---~--------~~~Ls~~--------------~~~~~~~~rp-------------Fd~------ 388 (470)
..|. . .|.+... ..++++.+|+ |+.
T Consensus 155 ~~~~g~tre~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t 234 (387)
T 3goa_A 155 SRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234 (387)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCcee
Confidence 0000 0 0011000 0124555555 765
Q ss_pred CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccEEEEeeec
Q 012130 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQMKSLNGFG 461 (470)
Q Consensus 389 ~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~veahGtG 461 (470)
-.|+..++||++++||+++++|+++|++||++|+|++.++|+.+... .++..++.+++ .+|+|+|+|++.
T Consensus 235 ~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~~~~~~---~~~~~a~~~al~~agl~~~did~ve~h~~f 311 (387)
T 3goa_A 235 AGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMG---YGPVPASKLALKKAGLSASDIDVFEMNEAF 311 (387)
T ss_dssp GGGBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCTTSTT---CTHHHHHHHHHHHHTCCGGGCSEEEECCSB
T ss_pred cccCCCcCccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCCCCcch---HHHHHHHHHHHHHcCCCHHHcCEEEEeCcc
Confidence 25777899999999999999999999999999999999998754332 23333333332 299999999998
Q ss_pred ce
Q 012130 462 KF 463 (470)
Q Consensus 462 T~ 463 (470)
|+
T Consensus 312 ~~ 313 (387)
T 3goa_A 312 AA 313 (387)
T ss_dssp HH
T ss_pred hH
Confidence 85
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=211.23 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
.++|+++++++||+|||++++ +++ +||+|+..+++. ....+..+++.+
T Consensus 55 ~~~L~~~Aa~~AL~dAgl~~~---~id----~v~~g~~~~~~~-------------------------~~~~a~~~a~~l 102 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPE---QLG----DICVGNVLQPGA-------------------------GAIMARIAQFLS 102 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----CEEEECSSSBGG-------------------------GHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCccc-------------------------cccHHHHHHHHc
Confidence 467999999999999999876 444 699998754331 123466788899
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh---------h------------HHhh----
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------L------------GGFV---- 367 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~---------~------------~~f~---- 367 (470)
|+ ++|+++|+++|+|+++||+.|+++|++|+||.+||||+|.+..... + .++.
T Consensus 103 Gl~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 182 (418)
T 2iik_A 103 DIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENV 182 (418)
T ss_dssp TCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHH
T ss_pred CCCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHH
Confidence 99 7999999999999999999999999999999999999998654210 0 0110
Q ss_pred --------------------------hcccccCC------------------CCCCCCCCcC-------------CCCCC
Q 012130 368 --------------------------ACRALSQR------------------NNDPTKASRP-------------WDINR 390 (470)
Q Consensus 368 --------------------------~~~~Ls~~------------------~~~~~~~~rp-------------Fd~~a 390 (470)
..+.+... -.++++.||| ||.++
T Consensus 183 a~~~gitre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~ 262 (418)
T 2iik_A 183 AERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDG 262 (418)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCC
Confidence 01111100 0124779999 99886
Q ss_pred -----CcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcC--chhHHHHHhh-------ccccEEE
Q 012130 391 -----DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD--GKSAMSLRLN-------FSVQMKS 456 (470)
Q Consensus 391 -----dG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~--g~~~~~~~~~-------~~i~~ve 456 (470)
||++++||+++|||++++.|+++|++|+++|+|++.+++ .|+.. ++..++.+++ .+|+|+|
T Consensus 263 ~~t~~d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~vE 337 (418)
T 2iik_A 263 STTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQKAGLTVSDVDIFE 337 (418)
T ss_dssp CCCSTTBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ceeeccccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHHHcCCCHHHCCeee
Confidence 999999999999999999999999999999999999864 34333 3333333332 2999999
Q ss_pred Eeeecc
Q 012130 457 LNGFGK 462 (470)
Q Consensus 457 ahGtGT 462 (470)
+|++.|
T Consensus 338 ~h~af~ 343 (418)
T 2iik_A 338 INEAFA 343 (418)
T ss_dssp ECCSBH
T ss_pred eeccch
Confidence 998654
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=211.86 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
.++|+++++++||+|+|++++ +++ ++++|+..+++. ...++.++++.+
T Consensus 27 ~~~L~~~a~~~Al~dAgl~~~---~id----~~~~g~~~~~~~-------------------------~~~~a~~ia~~l 74 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAG---EVN----EVILGQVLPAGE-------------------------GQNPARQAAMKA 74 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCTTS-------------------------CSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCCCCC-------------------------CcHHHHHHHHHc
Confidence 467999999999999999876 343 677887643211 124689999999
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhh---h--------HHhh-------------
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG---L--------GGFV------------- 367 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~---~--------~~f~------------- 367 (470)
|++ ||+++|+++|+|++.||++|+++|++|+||++||||+|.+.. |.. . ..|.
T Consensus 75 gl~~~~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 2vu1_A 75 GVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYG 154 (392)
T ss_dssp TCCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTC
T ss_pred CCCCCceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhccccccccc
Confidence 998 999999999999999999999999999999999999998543 220 0 0011
Q ss_pred -hcccc----------cC----------------------CCC--------CCCCCCcCCCCC-----------------
Q 012130 368 -ACRAL----------SQ----------------------RNN--------DPTKASRPWDIN----------------- 389 (470)
Q Consensus 368 -~~~~L----------s~----------------------~~~--------~~~~~~rpFd~~----------------- 389 (470)
.++++ ++ .++ .++ .|+|||.+
T Consensus 155 ~~~~~~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~-~~~~f~~d~~~r~~~t~e~~~~~~~ 233 (392)
T 2vu1_A 155 YHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRK-GDITVDADEYIRHGATLDSMAKLRP 233 (392)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTT-CCEEECSCSSCCTTCCHHHHHTCCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCC-CceeeccccccCCCCCHHHHhcCCC
Confidence 12222 10 000 012 28999998
Q ss_pred ---CCcce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcC--chhHHHHHhh-------c
Q 012130 390 ---RDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD--GKSAMSLRLN-------F 450 (470)
Q Consensus 390 ---adG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~--g~~~~~~~~~-------~ 450 (470)
+||++ ++||++++||+++++|+++|++||++|+|++.+++. |++. ++...+.+++ .
T Consensus 234 v~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~~agl~~~ 308 (392)
T 2vu1_A 234 AFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVD-----PKVMGTGPIPASRKALERAGWKIG 308 (392)
T ss_dssp SSCTTCCCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred ccCCCCCeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeecC-----hhhcchhHHHHHHHHHHHcCCCHH
Confidence 88999 999999999999999999999999999999998753 4333 4433333332 2
Q ss_pred cccEEEEeeecce
Q 012130 451 SVQMKSLNGFGKF 463 (470)
Q Consensus 451 ~i~~veahGtGT~ 463 (470)
+|+|+|+|-.-++
T Consensus 309 dId~ie~~d~f~~ 321 (392)
T 2vu1_A 309 DLDLVEANEAFAA 321 (392)
T ss_dssp GCSEEEECCSBHH
T ss_pred HcCEEEeccccHH
Confidence 9999999975443
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=207.16 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
.++|+++++++||+|+|++++ +++ ++++|+..+++ .....+.++++.|
T Consensus 32 ~~~l~~~a~~~Al~dAgl~~~---~id----~~~~g~~~~~~-------------------------~~~~~a~~va~~l 79 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKE---EVK----EAYMGNVLQGG-------------------------EGQAPTRQAVLGA 79 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCTT-------------------------SCSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC-------------------------CCchHHHHHHHHc
Confidence 357999999999999999876 333 57888764321 1123688999999
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh-------------------hHH--------
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------------------LGG-------- 365 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~-------------------~~~-------- 365 (470)
|+ +||+++|+++|+|+++||++|+++|++|+||++||||+|.+..... +..
T Consensus 80 gl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (395)
T 2ib8_A 80 GLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKI 159 (395)
T ss_dssp TCCTTCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTE
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccc
Confidence 99 8999999999999999999999999999999999999997543211 111
Q ss_pred ---------hhhcccccCC----------------------C-----------------CCCCCCCcC--CCC-------
Q 012130 366 ---------FVACRALSQR----------------------N-----------------NDPTKASRP--WDI------- 388 (470)
Q Consensus 366 ---------f~~~~~Ls~~----------------------~-----------------~~~~~~~rp--Fd~------- 388 (470)
..+.+ +++. . .+.|+.+|+ ||+
T Consensus 160 ~m~~~a~~~~~~~g-~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~ 238 (395)
T 2ib8_A 160 HMGSCAENTAKKLN-IARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTV 238 (395)
T ss_dssp EHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCT
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCcc
Confidence 01111 0100 0 012233333 666
Q ss_pred --CCCcce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCc--hhHHHHHhh-------c
Q 012130 389 --NRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG--KSAMSLRLN-------F 450 (470)
Q Consensus 389 --~adG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g--~~~~~~~~~-------~ 450 (470)
+++|++ ++||++++||+++++|+++|++||++|+|++.++ +.|++.+ +...+.+++ .
T Consensus 239 f~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~~Agl~~~ 313 (395)
T 2ib8_A 239 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA-----VEPIDFPIAPVYAASMVLKDVGLKKE 313 (395)
T ss_dssp TCSSSCCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGG
T ss_pred ccCCCCCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEec-----cChhhccccHHHHHHHHHHHcCCCHH
Confidence 679999 9999999999999999999999999999999875 3444433 333333332 2
Q ss_pred cccEEEEeeecc
Q 012130 451 SVQMKSLNGFGK 462 (470)
Q Consensus 451 ~i~~veahGtGT 462 (470)
||+|+|.|-.-+
T Consensus 314 dId~ie~~D~f~ 325 (395)
T 2ib8_A 314 DIAMWEVNEAFS 325 (395)
T ss_dssp GEEEEEECCSBH
T ss_pred HcCEEEEccccH
Confidence 999999997544
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=208.11 Aligned_cols=192 Identities=18% Similarity=0.205 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
.+|+++++++||+|+|++++ +++ +|++|+..+++. ..+..+.+|++.||
T Consensus 27 ~~L~~~Aa~~Al~dAgl~~~---~id----~v~~g~~~~~~~------------------------~~~~~a~~va~~lG 75 (401)
T 1ulq_A 27 DDLLAHALSVLVDRSGVPKE---EVE----DVYAGCANQAGE------------------------DNRNVARMALLLAG 75 (401)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCSST------------------------TTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecccCCC------------------------CCChHHHHHHHHhC
Confidence 56999999999999999876 343 799998754321 01356899999999
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hhhh------------------------HHhh-
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGL------------------------GGFV- 367 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~~~------------------------~~f~- 367 (470)
+ ++|+++|+++|+|+++||++|+++|++|+||.+||||+|.+.. |... .+|.
T Consensus 76 l~~~~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p 155 (401)
T 1ulq_A 76 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQ 155 (401)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHHH
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccccc
Confidence 9 7999999999999999999999999999999999999997654 3210 1221
Q ss_pred -h-----cccc---------------------cCC-----------C----------------CCCCC------------
Q 012130 368 -A-----CRAL---------------------SQR-----------N----------------NDPTK------------ 381 (470)
Q Consensus 368 -~-----~~~L---------------------s~~-----------~----------------~~~~~------------ 381 (470)
. +++. |+. . .++|+
T Consensus 156 ~~~~~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~~ 235 (401)
T 1ulq_A 156 ALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLA 235 (401)
T ss_dssp HHSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHH
T ss_pred cccccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHHh
Confidence 0 1110 000 0 01222
Q ss_pred CCcC-CCCCCCcce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh----
Q 012130 382 ASRP-WDINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN---- 449 (470)
Q Consensus 382 ~~rp-Fd~~adG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~---- 449 (470)
.+|| ||. ||++ ++||+++|||+++++|+++|+++|++|+|++.++|..+.+ +.++...+.+++
T Consensus 236 ~~rpif~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~~~---~~~~~~a~~~al~~Ag 310 (401)
T 1ulq_A 236 ALRPVFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIM---GIGPVPATRKALERAG 310 (401)
T ss_dssp HSCBSSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCGGGG---GGTHHHHHHHHHHHTT
T ss_pred hCCCccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCCcccc---chhHHHHHHHHHHHcC
Confidence 3567 875 7998 7999999999999999999999999999999999864322 234433333332
Q ss_pred ---ccccEEEEeeecce
Q 012130 450 ---FSVQMKSLNGFGKF 463 (470)
Q Consensus 450 ---~~i~~veahGtGT~ 463 (470)
.||+|+|+|.+.|+
T Consensus 311 l~~~dId~ie~heafa~ 327 (401)
T 1ulq_A 311 LSFSDLGLIELNEAFAA 327 (401)
T ss_dssp CCGGGCSEEEECCSBHH
T ss_pred CCHHHcCEEEEecchHH
Confidence 29999999998875
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=208.14 Aligned_cols=193 Identities=14% Similarity=0.165 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
.+|+++++++||+|||++++ +++ +||+|+..+++. ..+.++.++++.||
T Consensus 56 ~~La~~Aa~~AL~dAGl~~~---~Id----~vi~g~~~~~~~------------------------~~~~~a~~va~~lG 104 (442)
T 2wu9_A 56 DDLLAPVLRALIEKTNLNPS---EVG----DIVVGTVLAPGS------------------------QRASECRMAAFYAG 104 (442)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----CEEEECCSSBHH------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeecCccC------------------------CCChHHHHHHHHcC
Confidence 57999999999999999876 444 699998764431 11346889999999
Q ss_pred C--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc-hh---------hhH-Hhh-----hc--------
Q 012130 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PI---------GLG-GFV-----AC-------- 369 (470)
Q Consensus 316 l--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~-p~---------~~~-~f~-----~~-------- 369 (470)
+ ++|+++|+++|+|+++||++|+++|++|+||++||||+|.+.. |. .+. +|. .+
T Consensus 105 l~~~~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~~ 184 (442)
T 2wu9_A 105 FPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVA 184 (442)
T ss_dssp CCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHHH
T ss_pred CCCCceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHHH
Confidence 9 8999999999999999999999999999999999999997643 21 000 110 01
Q ss_pred ---------------------------ccccCC---------C----------CCCCC------------CCcC-CCCCC
Q 012130 370 ---------------------------RALSQR---------N----------NDPTK------------ASRP-WDINR 390 (470)
Q Consensus 370 ---------------------------~~Ls~~---------~----------~~~~~------------~~rp-Fd~~a 390 (470)
+.+... . .+.|+ .+|| ||.
T Consensus 185 ~~~gisre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~-- 262 (442)
T 2wu9_A 185 QRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK-- 262 (442)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT--
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC--
Confidence 112110 0 00122 4456 875
Q ss_pred Ccce-------ecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------ccccEEE
Q 012130 391 DGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FSVQMKS 456 (470)
Q Consensus 391 dG~v-------~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~i~~ve 456 (470)
||++ ++||+++|||++++.|+++|++|+++|+|++.++|...++ ..++..++.+++ .+|+|+|
T Consensus 263 ~G~vt~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~p~~~---~~~~~~A~~~Al~~AGl~~~DId~iE 339 (442)
T 2wu9_A 263 DGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIM---GIGPAVAIPAAVKAAGLELDDIDLFE 339 (442)
T ss_dssp TCCCCGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCGGGG---GGHHHHHHHHHHHHTTCCGGGCCEEE
T ss_pred CCCeechhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecCCchhc---chHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 7998 6999999999999999999999999999999999842222 224433333332 2999999
Q ss_pred Eeeeccee
Q 012130 457 LNGFGKFY 464 (470)
Q Consensus 457 ahGtGT~l 464 (470)
+|+++|..
T Consensus 340 ~h~aft~~ 347 (442)
T 2wu9_A 340 INEAFASQ 347 (442)
T ss_dssp ECCSBHHH
T ss_pred EeCCChHH
Confidence 99999963
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=202.65 Aligned_cols=217 Identities=13% Similarity=0.151 Sum_probs=149.6
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCcccc-ccCCHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTAG 243 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea-~~mdp~~rl~L~aa 243 (470)
++.|+|+|+..|.. .+.+++++.+. .+ +.| + ....| |..+.. ...++..+|+++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~----i-~~~~G----------i~~r~~~~~~~~~~~l~~~a~ 59 (317)
T 1hnj_A 2 YTKIIGTGSYLPEQVRTNADLEKMVD--TS-----DEW----I-VTRTG----------IRERHIAAPNETVSTMGFEAA 59 (317)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHH----H-HHHHC----------CCEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEEEEeCCCceecHHHHHHHhC--CC-----HHH----H-HHHhC----------ceEEEecCCCCCHHHHHHHHH
Confidence 58999999999998 57777775431 10 000 0 00000 222222 23467889999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-Cccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-Gps~t 322 (470)
++||+|+|++++ +++ +|++|+..+++ .....+.++++.||++ +|+++
T Consensus 60 ~~al~~ag~~~~---~id----~vi~g~~~~~~-------------------------~~~~~a~~v~~~lgl~~~~~~~ 107 (317)
T 1hnj_A 60 TRAIEMAGIEKD---QIG----LIVVATTSATH-------------------------AFPSAACQIQSMLGIKGCPAFD 107 (317)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSCCSC-------------------------SSSCHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEcCCCCC-------------------------CCCcHHHHHHHHhCCCCCeEEe
Confidence 999999999876 333 78888864211 0124689999999998 99999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+|++.||+.|+++|++|++|.+||+|+|.+ ++. +. |+...+|+++|||++++
T Consensus 108 v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~----------~~------------~~d~~~~~~~GdGA~A~ 164 (317)
T 1hnj_A 108 VAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-ART----------CD------------PTDRGTIIIFGDGAGAA 164 (317)
T ss_dssp ECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH-HHH----------SC------------TTCHHHHTTBCCEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechh-ccc----------CC------------chhcccceeeccccEEE
Confidence 99999999999999999999999999999999972 221 11 22234599999999999
Q ss_pred eeccchhHHhcCCeeeEEEEE-EeeccCCCCCCCcC-----------cCch----------hHHHHHhh-------cccc
Q 012130 403 LLEELEHAKKRGAKIYAEFRG-GSFTSDAYHMTEPH-----------PDGK----------SAMSLRLN-------FSVQ 453 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~I~G-~a~~~dg~~~t~P~-----------p~g~----------~~~~~~~~-------~~i~ 453 (470)
|||+.++ ..||+++.+ .+...|..+++.|+ ++|+ ...+..+. -+|+
T Consensus 165 vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~~agl~~~did 239 (317)
T 1hnj_A 165 VLAASEE-----PGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD 239 (317)
T ss_dssp EEEEESS-----CSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred EEEecCC-----CceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 9998753 458887765 33333444443321 3343 12222221 1899
Q ss_pred EEEEeeeccee
Q 012130 454 MKSLNGFGKFY 464 (470)
Q Consensus 454 ~veahGtGT~l 464 (470)
|+++|+|||.+
T Consensus 240 ~v~~H~~~~~~ 250 (317)
T 1hnj_A 240 WLVPHQANLRI 250 (317)
T ss_dssp EEEECCSCHHH
T ss_pred EEEEcCCCHHH
Confidence 99999999976
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=198.80 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+++++++||+|+|++++ +++ +|++|+..+++ .....+.++++.+
T Consensus 31 ~~~L~~~A~~~AL~~agl~~~---dId----~vi~g~~~~~~-------------------------~~~~~a~~v~~~l 78 (396)
T 4dd5_A 31 AVELGVTAAKEAIKRANITPD---MID----ESLLGGVLTAG-------------------------LGQNIARQIALGA 78 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCGG---GCC----EEEEECSCCTT-------------------------SCSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeecCCC-------------------------CCchHHHHHHHHc
Confidence 356999999999999999987 444 78999864321 1123578999999
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhH---------------------Hh-----
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG---------------------GF----- 366 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~---------------------~f----- 366 (470)
|+ .+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+....... ++
T Consensus 79 Gl~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (396)
T 4dd5_A 79 GIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFN 158 (396)
T ss_dssp TCCTTSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETTT
T ss_pred CCCCCceEEEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhcccccccc
Confidence 99 589999999999999999999999999999999999999865421110 00
Q ss_pred ----------------------------hh--------cccccCC-------------CCCCCCCCcC------------
Q 012130 367 ----------------------------VA--------CRALSQR-------------NNDPTKASRP------------ 385 (470)
Q Consensus 367 ----------------------------~~--------~~~Ls~~-------------~~~~~~~~rp------------ 385 (470)
++ .|.+... ..+++..+|+
T Consensus 159 ~~~~~~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~~ 238 (396)
T 4dd5_A 159 NYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRP 238 (396)
T ss_dssp TEEHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCCB
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCCC
Confidence 00 0000000 0124445543
Q ss_pred -CCC-----CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcC--chhHHHHHhh-------c
Q 012130 386 -WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD--GKSAMSLRLN-------F 450 (470)
Q Consensus 386 -Fd~-----~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~--g~~~~~~~~~-------~ 450 (470)
|+. ..|...++||++++||+++++|+++|++||++|+|++++++. |++. ++...+.+++ .
T Consensus 239 v~~p~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~ 313 (396)
T 4dd5_A 239 AFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVD-----PKIMGYGPVPATKKALEAANMTIE 313 (396)
T ss_dssp SSSTTCSCBTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred ccCCCCCeecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecCC-----CCcccHHHHHHHHHHHHHcCCCHH
Confidence 542 246667899999999999999999999999999999999863 4433 3444443333 2
Q ss_pred cccEEEEeeecce
Q 012130 451 SVQMKSLNGFGKF 463 (470)
Q Consensus 451 ~i~~veahGtGT~ 463 (470)
+|+|||+|.+.++
T Consensus 314 dId~ve~~d~f~~ 326 (396)
T 4dd5_A 314 DIDLVEANEAFAA 326 (396)
T ss_dssp GCSEEEECCSBHH
T ss_pred HcCEEEecChHHH
Confidence 9999999998664
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=204.25 Aligned_cols=221 Identities=16% Similarity=0.146 Sum_probs=150.6
Q ss_pred CCCCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccc-cCCHHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSK-RMDKFMLYL 239 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~-~mdp~~rl~ 239 (470)
+.+.++.|+|+|+.+|.. .+.+++|+.+... +.|- . ...| |..+... ..++.++|+
T Consensus 7 ~~~~~~~I~gig~~~P~~~~~~~~~~~~~~~~-------~~~i----~-~~~G----------i~~R~~~~~~~~~~~la 64 (339)
T 1mzj_A 7 PERRFSRVLGVGSYRPRREVSNKEVCTWIDST-------EEWI----E-TRTG----------IRSRRIAEPDETIQVMG 64 (339)
T ss_dssp CCCCEEEEEEEEEECCSCEEEHHHHTTTSSCC-------HHHH----H-HHHC----------CSEEECCCTTCCHHHHH
T ss_pred CccCceEEEEEEEeCCCccccHHHHHHHhCCC-------HHHH----H-HhcC----------ceEEEEeCCCCCHHHHH
Confidence 345689999999999998 6788887654210 0000 0 0000 2222221 245688999
Q ss_pred HHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-C
Q 012130 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-G 318 (470)
Q Consensus 240 L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-G 318 (470)
++++++||+|+|++++ +++ +|++|+..+++ ..+ ..+.+|++.||++ +
T Consensus 65 ~~Aa~~al~~ag~~~~---~id----~vi~gt~~~~~--------------------~~p-----~~a~~v~~~lgl~~~ 112 (339)
T 1mzj_A 65 VAASRRALEHAGVDPA---EID----LVVVSTMTNFV--------------------HTP-----PLSVAIAHELGADNA 112 (339)
T ss_dssp HHHHHHHHHHHTCCGG---GCC----EEEEECSCCCC--------------------CSS-----CHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHcCCCHH---HCC----EEEEEecCCCC--------------------CCC-----hHHHHHHHHhCCCCc
Confidence 9999999999999876 333 78999875422 111 2578999999998 7
Q ss_pred cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecce
Q 012130 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 319 ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEG 398 (470)
|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+ ++. +. + +..++|+++|||
T Consensus 113 ~~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~-s~~----------~~-----~-------~d~~~~~~~GdG 169 (339)
T 1mzj_A 113 GGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TDV----------ID-----L-------ADRSLSFLFGDG 169 (339)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GGG----------SC-----S-------SCTTTTTTBCEE
T ss_pred cEEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc----------cC-----c-------cccccceEeccC
Confidence 999999999999999999999999999999999999973 332 11 1 124679999999
Q ss_pred eEeEeeccchhHHhcCCeeeEEE-EEEeeccCCCCCC--CcCc-------------Cc----------hhHHHHHhh---
Q 012130 399 AGVLLLEELEHAKKRGAKIYAEF-RGGSFTSDAYHMT--EPHP-------------DG----------KSAMSLRLN--- 449 (470)
Q Consensus 399 agalvLe~l~~A~~~G~~I~a~I-~G~a~~~dg~~~t--~P~p-------------~g----------~~~~~~~~~--- 449 (470)
++++|||+.+. +.|+++. .+.+...|..+++ .|++ +| +...+..+.
T Consensus 170 A~A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~a 244 (339)
T 1mzj_A 170 AGAAVVGPSDV-----PGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREALEVA 244 (339)
T ss_dssp EEEEEEEEESS-----CCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEecCC-----CCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998653 4566542 3333333333332 1322 12 212222221
Q ss_pred ----ccccEEEEeeeccee
Q 012130 450 ----FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 ----~~i~~veahGtGT~l 464 (470)
-+|+|+++|+|||.+
T Consensus 245 gl~~~did~v~~H~~~~~~ 263 (339)
T 1mzj_A 245 GLTVGDLVAFVPHQANLRI 263 (339)
T ss_dssp TCCGGGCSEEEECCSCHHH
T ss_pred CCCHHHCCEEEECCCCHHH
Confidence 189999999999976
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-22 Score=199.69 Aligned_cols=217 Identities=13% Similarity=0.137 Sum_probs=148.5
Q ss_pred EEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCcccc-ccCCHHHHHHHHHHH
Q 012130 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTAGK 244 (470)
Q Consensus 167 VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea-~~mdp~~rl~L~aa~ 244 (470)
+.|+|+|...|.. .+.+++++.+.. + +.| +. ...| |..+.. ..-++..+|++++++
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~--~-----~~~----i~-~~~G----------i~~r~~~~~~~~~~~la~~a~~ 59 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDT--S-----DEW----IV-TRTG----------IKERRVAAEDEYTSDLAFKAVE 59 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSC--C-----HHH----HH-HHTC----------CCEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEEEEECCCceecHHHHHHHhCC--C-----HHH----HH-HhcC----------ceEEeecCCCCCHHHHHHHHHH
Confidence 5799999999988 677777754311 0 000 00 0000 111111 113467899999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCCcceeec
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV~ 324 (470)
+||+|+|++++ +++ +|++|+...++ .. ...+.+++..||+++|+++|+
T Consensus 60 ~al~~ag~~~~---~id----~vi~~~~~~~~--------------------~~-----~~~a~~v~~~lgl~~~~~~v~ 107 (322)
T 1ub7_A 60 DLLRRHPGALE---GVD----AVIVATNTPDA--------------------LF-----PDTAALVQARFGLKAFAYDLL 107 (322)
T ss_dssp HHHHHSTTTTT---TEE----EEEEECSSCSE--------------------EE-----SCHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CC-----CcHHHHHHHHhCCCCEEEeeC
Confidence 99999999875 222 68888864211 11 125789999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEee
Q 012130 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (470)
Q Consensus 325 tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalvL 404 (470)
++|+|++.||+.|+++|++|++|.+||+|+|. +++. ..||| .++|+++|||++++||
T Consensus 108 ~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~-~s~~---------------------~~~~d-~~~~~~~GdGA~A~vL 164 (322)
T 1ub7_A 108 AGCPGWIYALAQAHALVEAGLAQKVLAVGAEA-LSKI---------------------IDWND-RATAVLFGDGGGAAVV 164 (322)
T ss_dssp CSTTHHHHHHHHHHHHHHTTSCSEEEEEEEEC-GGGT---------------------SCTTC-HHHHTTBCCEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEEech-hccc---------------------cChhh-cccceeeccccEEEEE
Confidence 99999999999999999999999999999997 3321 12444 6689999999999999
Q ss_pred ccchhHHhcCCeeeEEE-EEEeeccCCCCCCC-----cCc---------Cc----------hhHHHHHhh-------ccc
Q 012130 405 EELEHAKKRGAKIYAEF-RGGSFTSDAYHMTE-----PHP---------DG----------KSAMSLRLN-------FSV 452 (470)
Q Consensus 405 e~l~~A~~~G~~I~a~I-~G~a~~~dg~~~t~-----P~p---------~g----------~~~~~~~~~-------~~i 452 (470)
++.++ +..|++++ .+.+...|..+++. |++ +| +...+.++. -+|
T Consensus 165 ~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~di 240 (322)
T 1ub7_A 165 GKVRE----GYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPEDI 240 (322)
T ss_dssp ECCCT----TCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred EecCC----CCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 98754 45677765 44444444433332 433 22 222222221 199
Q ss_pred cEEEEeeeccee
Q 012130 453 QMKSLNGFGKFY 464 (470)
Q Consensus 453 ~~veahGtGT~l 464 (470)
+|+++|+|||.+
T Consensus 241 d~~~~H~~~~~~ 252 (322)
T 1ub7_A 241 RLFVPHQANLRI 252 (322)
T ss_dssp SEEEECCSCHHH
T ss_pred CEEEEcCCCHHH
Confidence 999999999876
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=194.70 Aligned_cols=214 Identities=15% Similarity=0.227 Sum_probs=148.8
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
++.|+|+|+.+|.. .+.+++++.+. .+ +.| +. ...| |..+.....++..+|++++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~----i~-~~~G----------i~~r~~~~~~~~~~l~~~a~~ 59 (309)
T 2ebd_A 2 GTKIIGTGVYLPKNVLTNFDLEKIVD--TS-----DEW----IT-TRTG----------IKERRIAKEETITYMATQAAK 59 (309)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHH----HH-HHHC----------CCEEEECSSCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCceEcHHHHHHHcC--CC-----HHH----HH-HHhC----------ceeeeecCCCCHHHHHHHHHH
Confidence 48999999999998 57777765431 10 000 00 0000 111111111678899999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC-cceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G-ps~tV 323 (470)
+||+|+|++++ +++ +|++|+..+++ .. + ..+.++++.||++| |+++|
T Consensus 60 ~al~~ag~~~~---~id----~v~~~~~~~~~--------------------~~----~-~~a~~v~~~lgl~~~~~~~v 107 (309)
T 2ebd_A 60 EALREANLSPE---ELD----LIILATLTPQK--------------------RF----P-STACLVQAQLKAKGVYAFDI 107 (309)
T ss_dssp HHHHHHTCCGG---GCS----EEEEECSSCSS--------------------SS----S-CHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CC----C-cHHHHHHHHhCCCCceEEec
Confidence 99999999876 333 79999875321 11 1 25889999999999 99999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+++|+|++.||+.|+++|++|++|.+||+|+|.+. +. + . |+...+|+++|||++++|
T Consensus 108 ~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~s-~~----------~-----------~-~~~~~~~~~~gdGaaA~v 164 (309)
T 2ebd_A 108 SAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLS-EA----------V-----------D-WEDRSTCVLFGDGAGAVV 164 (309)
T ss_dssp ECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGG-GT----------C-----------C-TTCTTTTTTBCEEEEEEE
T ss_pred CccchHHHHHHHHHHHHHHCCCCCEEEEEEecccc-cc----------c-----------C-ccchhhccccccccEEEE
Confidence 99999999999999999999999999999999732 11 1 1 233568999999999999
Q ss_pred eccchhHHhcCCeeeEEEEEEeeccCCC---CCCCc-----CcCch----------hHHHHHhh-------ccccEEEEe
Q 012130 404 LEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEP-----HPDGK----------SAMSLRLN-------FSVQMKSLN 458 (470)
Q Consensus 404 Le~l~~A~~~G~~I~a~I~G~a~~~dg~---~~t~P-----~p~g~----------~~~~~~~~-------~~i~~veah 458 (470)
|++.+++ ..|+++ ..++||. +++.| +++|+ ...+..+. .+|+|+++|
T Consensus 165 L~~~~~~----~~i~~~----~~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H 236 (309)
T 2ebd_A 165 VTRSEDK----SDILAT----RMYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPH 236 (309)
T ss_dssp EEECSSS----CEEEEE----EEEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEC
T ss_pred EEecCCC----CceeEE----EEEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEc
Confidence 9987654 235554 3455663 56666 44443 11222211 299999999
Q ss_pred eeccee
Q 012130 459 GFGKFY 464 (470)
Q Consensus 459 GtGT~l 464 (470)
++||.+
T Consensus 237 ~~~~~~ 242 (309)
T 2ebd_A 237 QANVRI 242 (309)
T ss_dssp CSCHHH
T ss_pred CCCHHH
Confidence 999975
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=195.34 Aligned_cols=191 Identities=19% Similarity=0.234 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+++++++||+|+|++++ +++ +|++|+...++ .....+.+++..+
T Consensus 29 ~~~L~~~A~~~Al~~agl~~~---~Id----~v~~g~~~~~~-------------------------~~~~~a~~i~~~l 76 (394)
T 3ss6_A 29 PVELAVPVLQEAVKRGGVEPH---EVD----EVILGHCIQRT-------------------------DEANTARTAALAA 76 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCCGG---GCC----EEEEECSSCCG-------------------------GGCSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHh---HCC----EEEEEEccCCC-------------------------ccchHHHHHHHHc
Confidence 356999999999999999987 444 68998764321 1123578899999
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhH--------------------H-------
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG--------------------G------- 365 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~--------------------~------- 365 (470)
|+ ++|+++|+++|+|+++||++|+++|++|+||.+||+|+|.+....... +
T Consensus 77 Gl~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T 3ss6_A 77 GFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHH 156 (394)
T ss_dssp TCCTTCEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTC
T ss_pred CCCCCceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCccccccccccccccccc
Confidence 99 589999999999999999999999999999999999999865422100 0
Q ss_pred ----h----------------------hhc--------ccccC---------C----CCCCCCCCcC-------------
Q 012130 366 ----F----------------------VAC--------RALSQ---------R----NNDPTKASRP------------- 385 (470)
Q Consensus 366 ----f----------------------~~~--------~~Ls~---------~----~~~~~~~~rp------------- 385 (470)
. +.. |.+.. . -.+|++.+|+
T Consensus 157 ~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pv 236 (394)
T 3ss6_A 157 IMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPA 236 (394)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCc
Confidence 0 000 00000 0 0136777775
Q ss_pred CCCC-----CCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCc--hhHHHHHhh-------cc
Q 012130 386 WDIN-----RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG--KSAMSLRLN-------FS 451 (470)
Q Consensus 386 Fd~~-----adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g--~~~~~~~~~-------~~ 451 (470)
||.+ .|+..++||++++||+++++|+++|++|+++|+|++++++ .|++.+ +..++.+++ .+
T Consensus 237 f~~~g~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~d 311 (394)
T 3ss6_A 237 FRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGV-----DPKIMGIGPAPAIRKGLEKVDWSLED 311 (394)
T ss_dssp SSTTCCCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGG
T ss_pred cCCCCceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEecC-----CCccchHHHHHHHHHHHHHcCCCHHH
Confidence 7643 5777789999999999999999999999999999999873 344433 433333332 29
Q ss_pred ccEEEEeeecc
Q 012130 452 VQMKSLNGFGK 462 (470)
Q Consensus 452 i~~veahGtGT 462 (470)
|+|+|+|..-+
T Consensus 312 Id~ve~~d~fa 322 (394)
T 3ss6_A 312 ADLLEINEAFA 322 (394)
T ss_dssp CSEEEECCSBH
T ss_pred cCEEEeCCchH
Confidence 99999998743
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=186.86 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+++++++||+|+|++++ +++ +|++|+....+ .....+.++++.+
T Consensus 29 ~~~L~~~a~~~Al~~agi~~~---~Id----~v~~g~~~~~~-------------------------~~~~~a~~~~~~l 76 (395)
T 4e1l_A 29 AVQLGTIAVKEAISRVGLNLS---EID----EVIIGNVLQTG-------------------------LGQNVARQIAINA 76 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCCGG---GCC----EEEEECCCCSS-------------------------TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC-------------------------CcchHHHHHHHHc
Confidence 356999999999999999987 444 78998764211 1123578899999
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhH----------------------------
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG---------------------------- 364 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~---------------------------- 364 (470)
|+ ++|+++|+++|+|+++||+.|+++|++|+||.+||+|+|.+.......
T Consensus 77 Gl~~~~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 4e1l_A 77 GIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFN 156 (395)
T ss_dssp TCCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETT
T ss_pred CCCCCceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhcccccccccc
Confidence 99 689999999999999999999999999999999999999866522110
Q ss_pred ----H-------------------h---hhc--------ccccCC--------------CCCCCCCCcC-----------
Q 012130 365 ----G-------------------F---VAC--------RALSQR--------------NNDPTKASRP----------- 385 (470)
Q Consensus 365 ----~-------------------f---~~~--------~~Ls~~--------------~~~~~~~~rp----------- 385 (470)
+ | +.. |.+... -.++++.+|+
T Consensus 157 ~~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~ 236 (395)
T 4e1l_A 157 QYHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLK 236 (395)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCC
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCC
Confidence 0 0 000 000000 0124555654
Q ss_pred --CCC-----CCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------cc
Q 012130 386 --WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-------FS 451 (470)
Q Consensus 386 --Fd~-----~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-------~~ 451 (470)
|+. ..|...++||++++||+++++|+++|++||++|+|++++++.-. +.+.++...+.+++ .+
T Consensus 237 ~v~~~~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~---~~~~~~~~ai~~al~~agl~~~d 313 (395)
T 4e1l_A 237 PAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPE---VMGTGPIPATRKALKKAGLSIND 313 (395)
T ss_dssp BSSSTTCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECCGG---GTTCTHHHHHHHHHHHTTCCGGG
T ss_pred CccCCCCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccCCCC---cchHHHHHHHHHHHHHcCCCHHH
Confidence 553 24677789999999999999999999999999999999986321 12334444444333 29
Q ss_pred ccEEEEeeecc
Q 012130 452 VQMKSLNGFGK 462 (470)
Q Consensus 452 i~~veahGtGT 462 (470)
|+|+|+|..-+
T Consensus 314 Id~ve~~d~fa 324 (395)
T 4e1l_A 314 IDLIEANEAFA 324 (395)
T ss_dssp CSEEEECCSBH
T ss_pred cCEEEecChhH
Confidence 99999998744
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-21 Score=191.30 Aligned_cols=179 Identities=20% Similarity=0.300 Sum_probs=130.5
Q ss_pred CCCCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCC-CCccccc-cCCHHHHH
Q 012130 162 MKQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW-VAPKLSK-RMDKFMLY 238 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~f-i~p~ea~-~mdp~~rl 238 (470)
..|.++.|+|+|+.+|.. .+.+++|+.+.. + +.| +. ..+ |..+... ..++..+|
T Consensus 8 ~~m~~~~I~g~g~~~P~~~~~~~~~~~~~~~--~-----~~~------------i~----~~~gi~~r~~~~~~~~~~~l 64 (335)
T 1u6e_A 8 SGARSVGLLSVGAYRPERVVTNDEICQHIDS--S-----DEW------------IY----TRTGIKTRRFAADDESAASM 64 (335)
T ss_dssp CCCSCEEEEEEEEECCSEEEEHHHHTTSSSC--C-----HHH------------HH----HHHCCSEEEECCTTCCHHHH
T ss_pred cCCCceEEEEEEEECCCceecHHHHHHHhCC--C-----HHH------------HH----HhcCCceEeecCCCCCHHHH
Confidence 346789999999999998 677888764311 0 011 00 000 2223222 24568899
Q ss_pred HHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-
Q 012130 239 LLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM- 317 (470)
Q Consensus 239 ~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~- 317 (470)
+++++++||+|+|++++ +++ +|++|+..+++ .. ...+.+|+..||++
T Consensus 65 a~~A~~~al~~ag~~~~---~id----~vi~~t~~~~~--------------------~~-----~~~a~~v~~~lgl~~ 112 (335)
T 1u6e_A 65 ATEACRRALSNAGLSAA---DID----GVIVTTNTHFL--------------------QT-----PPAAPMVAASLGAKG 112 (335)
T ss_dssp HHHHHHHHHHHHTCCGG---GCC----EEEEECSCCCC--------------------SS-----SCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CC-----ChHHHHHHHHhCCCC
Confidence 99999999999999876 333 78999875322 11 13578999999998
Q ss_pred CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecc
Q 012130 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (470)
Q Consensus 318 Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GE 397 (470)
+|+++|+++|+|++.||++|+++|++|++|.+||+|+|.+. + ..+||| ..+|+++||
T Consensus 113 ~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~---------------------~~~~~d-~~~~~~~gD 169 (335)
T 1u6e_A 113 ILGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLS-P---------------------TIDMYD-RGNCFIFAD 169 (335)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECG-G---------------------GCCTTC-TTTTTTBCE
T ss_pred CcEeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEcccc-c---------------------ccCccc-cccceEecc
Confidence 69999999999999999999999999999999999999742 1 123454 348999999
Q ss_pred eeEeEeeccchhHHhcCCeeeEEEEE
Q 012130 398 GAGVLLLEELEHAKKRGAKIYAEFRG 423 (470)
Q Consensus 398 GagalvLe~l~~A~~~G~~I~a~I~G 423 (470)
|++++||++.++ ++ ++.++.+
T Consensus 170 GA~A~vl~~~~~---~~--i~~~~~~ 190 (335)
T 1u6e_A 170 GAAAVVVGETPF---QG--IGPTVAG 190 (335)
T ss_dssp EEEEEEEEECSS---CC--BCCCEEE
T ss_pred ccEEEEEEecCC---CC--eeEEEEE
Confidence 999999998754 22 5555543
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=188.74 Aligned_cols=218 Identities=19% Similarity=0.286 Sum_probs=145.2
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccc-cccCCHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKL-SKRMDKFMLYLLTAG 243 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~e-a~~mdp~~rl~L~aa 243 (470)
++.|+|+|+..|.. .+.+++++.+. .+ +.| +. +..+ |..+. ...-++..+|+++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~----i~-~~~g----------i~~r~~~~~~~~~~~l~~~a~ 59 (313)
T 1zow_A 2 NVGIKGFGAYAPEKIIDNAYFEQFLD--TS-----DEW----IS-KMTG----------IKERHWADDDQDTSDLAYEAS 59 (313)
T ss_dssp CEEEEEEEEECCSCEEEGGGGGGTSS--CC-----HHH----HH-HHHC----------CSEEECCCTTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCccccHHHHHHhcC--CC-----HHH----HH-HhhC----------ceEEEecCCCCCHHHHHHHHH
Confidence 48899999999988 46666655321 00 000 00 0000 11111 111245788999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-Cccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-Gps~t 322 (470)
++||+|+|++++ +++ +|++|+..+++ ..+ ..+.+++..+|++ +|+++
T Consensus 60 ~~al~~ag~~~~---~id----~vi~~~~~~~~--------------------~~~-----~~a~~v~~~lgl~~~~~~~ 107 (313)
T 1zow_A 60 VKAIADAGIQPE---DID----MIIVATATGDM--------------------PFP-----TVANMLQERLGTGKVASMD 107 (313)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSSCSC--------------------SSS-----CHHHHHHHHHTCCSCCEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEcCCCCC--------------------CCC-----cHHHHHHHHhCCCCCcEEE
Confidence 999999999876 333 78999875321 111 2478999999998 69999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+|++.||+.|+++|++|++|.+||+|+|.+. +. .+|||. .+|+++|||++++
T Consensus 108 v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~~---------------------~~~~d~-~~~~~~gdGa~A~ 164 (313)
T 1zow_A 108 QLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLS-KI---------------------TDLTDR-STAVLFGDGAGAV 164 (313)
T ss_dssp EECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEGG-GT---------------------CCTTCH-HHHTTBCEEEEEE
T ss_pred ECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-cc---------------------cCcccc-cceeeeccceEEE
Confidence 999999999999999999999999999999999732 11 135543 3799999999999
Q ss_pred eeccchhHHhcCCeeeEE-EEEEeeccCCCCCCCc----CcCch----------hHHHHHhh-------ccccEEEEeee
Q 012130 403 LLEELEHAKKRGAKIYAE-FRGGSFTSDAYHMTEP----HPDGK----------SAMSLRLN-------FSVQMKSLNGF 460 (470)
Q Consensus 403 vLe~l~~A~~~G~~I~a~-I~G~a~~~dg~~~t~P----~p~g~----------~~~~~~~~-------~~i~~veahGt 460 (470)
||++.++ +.+|++. +.+.+...|..+++.| ..++. ...+..+. -+|+|+++|++
T Consensus 165 vl~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~ 240 (313)
T 1zow_A 165 IIGEVSE----GRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQA 240 (313)
T ss_dssp EEEECST----TCEEEEEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCS
T ss_pred EEEecCC----CCceeEEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCC
Confidence 9998764 3566653 4444433333333322 12232 22222211 28999999999
Q ss_pred ccee
Q 012130 461 GKFY 464 (470)
Q Consensus 461 GT~l 464 (470)
||.+
T Consensus 241 ~~~~ 244 (313)
T 1zow_A 241 NIRI 244 (313)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 9975
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=192.88 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=153.7
Q ss_pred EEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCC--CC-----CCCCCCccc-cccccCCCCCCCCCccccccCCHHHH
Q 012130 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIE--TF-----DCTSFPTKI-AAEIKSFSTDGWVAPKLSKRMDKFML 237 (470)
Q Consensus 167 VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~--~~-----~~~~~~~~~-~g~i~~fd~~~fi~p~ea~~mdp~~r 237 (470)
+.|+|+|+.+|.. .+.++||+.+.... .+.+ +| ...+...+. ....+.|+..+-+++++....++...
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~---~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 86 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRH---TDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKS 86 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHH---TTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhc---cChhhHHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHHHHHHH
Confidence 7999999999998 68899998875431 0000 00 001111111 11122233211145555555677889
Q ss_pred HHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC
Q 012130 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (470)
Q Consensus 238 l~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~ 317 (470)
|+++++++||+++|++++ +++ .|++++..+ +..+ ..+.+|+..||++
T Consensus 87 la~~Aa~~aL~~agl~~~---~id----~vi~~t~~~---------------------~~~p-----~~a~~v~~~lGl~ 133 (382)
T 1u0m_A 87 RVPAVIQRALDDAELLAT---DID----VIIYVSCTG---------------------FMMP-----SLTAWLINEMGFD 133 (382)
T ss_dssp HHHHHHHHHHHHHTCCGG---GCS----EEEEECSSS---------------------CCSS-----CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHH---HCC----EEEEEecCC---------------------CCCC-----cHHHHHHHHhCCC
Confidence 999999999999999876 333 577776531 1111 3578999999999
Q ss_pred C--cceee-cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCC---
Q 012130 318 G--PNYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD--- 391 (470)
Q Consensus 318 G--ps~tV-~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ad--- 391 (470)
+ |+++| +++|+|+++||+.|+++|++|++|.+||+|+|.+ ++. .+|||.+++
T Consensus 134 ~~~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~-s~~---------------------~~~~d~~~~~~~ 191 (382)
T 1u0m_A 134 STTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFC-SLC---------------------YQPTDLGVGSLL 191 (382)
T ss_dssp TTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEG-GGG---------------------CCTTCCSHHHHH
T ss_pred CCcceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEecc-chh---------------------cCcccCCHHHhh
Confidence 8 89999 9999999999999999999999999999999973 221 234554444
Q ss_pred -cceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCC------------C----CCcCcCchhH-HHHHhh----
Q 012130 392 -GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH------------M----TEPHPDGKSA-MSLRLN---- 449 (470)
Q Consensus 392 -G~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~------------~----t~P~p~g~~~-~~~~~~---- 449 (470)
|+++|||++++||++.++ +|..|++... ..+.|+.+ + ..|....... .+..+.
T Consensus 192 ~~~lfGDGA~A~vL~~~~~---~g~~i~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~i~~aL~~ag 266 (382)
T 1u0m_A 192 CNGLFGDGIAAAVVRGRGG---TGVRLERNGS--YLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEHG 266 (382)
T ss_dssp HHHHBCEEEEEEEEETTTC---SEEEEEEEEE--EECSSCTTTEEEEEETTEEEEEECTTTGGGHHHHHHHHHHHHHTTS
T ss_pred ccchhcCCcEEEEEeccCC---CCcEEEEeee--EecCChHHhcCceecCCceEEEeCcHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999997654 3444444322 22444432 1 1122111211 222221
Q ss_pred ---ccccEEEEeeeccee
Q 012130 450 ---FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 ---~~i~~veahGtGT~l 464 (470)
-+|+|+++|++||.+
T Consensus 267 l~~~dId~v~~H~~~~~i 284 (382)
T 1u0m_A 267 WDASDLDFYIVHAGGPRI 284 (382)
T ss_dssp CCSSCCSCCEEECSHHHH
T ss_pred CCHHHCCEEEECCCCHHH
Confidence 189999999999875
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=191.21 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=143.4
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCC-----CCCCCCccc-cccccCCCCCCC-CCccccccC----
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETF-----DCTSFPTKI-AAEIKSFSTDGW-VAPKLSKRM---- 232 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~-----~~~~~~~~~-~g~i~~fd~~~f-i~p~ea~~m---- 232 (470)
.+|.|+|+|+.+|.. .+.+++|+.+....+.-.+..+| ...+...+. ...-..||+.+| +++.+...+
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDVNNQF 91 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHHHHHHHH
Confidence 469999999999998 68899999875422100000000 001111111 000024677777 677777766
Q ss_pred -CHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHH
Q 012130 233 -DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (470)
Q Consensus 233 -dp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is 311 (470)
++...|+++++++||+++|++++ +++ +|++|+..+ +..+ ..+.+|+
T Consensus 92 ~~~~~~la~~Aa~~al~~ag~~~~---~id----~vi~~t~~~---------------------~~~p-----~~a~~v~ 138 (374)
T 2h84_A 92 KKVVPDLAQQACLRALKDWGGDKG---DIT----HIVSVTSTG---------------------IIIP-----DVNFKLI 138 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSC---------------------CCSS-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeeCC---------------------CCCC-----cHHHHHH
Confidence 88999999999999999999876 333 678887631 1111 2578999
Q ss_pred HHhCCCC--cceeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCC
Q 012130 312 MDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (470)
Q Consensus 312 ~~~gl~G--ps~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~ 388 (470)
+.||+++ |++.|. ++|+|+++||+.|+++|++|++|.+||+|+|.+. +. +- .|.|.
T Consensus 139 ~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s-~~----------~~----------~~~dr 197 (374)
T 2h84_A 139 DLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCS-LH----------FS----------NTDGG 197 (374)
T ss_dssp HHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCG-GG----------CC----------CSSSH
T ss_pred HHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-hh----------hc----------CCCCH
Confidence 9999998 899996 8999999999999999999999999999999832 21 10 12222
Q ss_pred C--CCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeec
Q 012130 389 N--RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT 427 (470)
Q Consensus 389 ~--adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~ 427 (470)
+ .+|+++|||++++||++.+++..+ .++ +|.+.+..
T Consensus 198 ~~~~~~~lfGDGA~A~vL~~~~~~~~~--~~~-~l~~~g~~ 235 (374)
T 2h84_A 198 DQMVASSIFADGSAAYIIGCNPRIEET--PLY-EVMCSINR 235 (374)
T ss_dssp HHHHHHHHBCCEEEEEEEESSCCTTCC--CCE-EEEEEEEE
T ss_pred HHHhhhhhhccCcEEEEEecCCCcccC--Cce-eEEeeeeE
Confidence 2 158999999999999988776433 355 67776543
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=185.66 Aligned_cols=214 Identities=21% Similarity=0.240 Sum_probs=147.7
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
++.|+|+|+.+|.. .+.+++|+.+.... .|- . ...| |..+.....++..+|++++++
T Consensus 5 ~~~I~g~g~~~P~~~~~~~~~~~~~~~~~-------~~i----~-~~~G----------i~~R~~~~~~~~~~la~~Aa~ 62 (331)
T 2x3e_A 5 AAVVCGLGSYLPEAVLSNDMLAAELDTSD-------AWI----S-SRTG----------VRQRHIAGDLGSGDLALRAAS 62 (331)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHTTCCH-------HHH----H-HHHC----------CCEEECCTTCCHHHHHHHHHH
T ss_pred eeEEEEEEEECCCcEecHHHHHHHhCCCH-------HHH----H-HhhC----------ceEEEecCCCCHHHHHHHHHH
Confidence 68999999999998 67888887653210 000 0 0000 122222222678899999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-Ccceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-Gps~tV 323 (470)
+||+|+|+ + +++ .|++|+..+++ ..+ ..+.+|++.||++ +|+++|
T Consensus 63 ~al~~ag~--~---~id----~vi~~t~~~~~--------------------~~p-----~~a~~v~~~lgl~~~~~~~v 108 (331)
T 2x3e_A 63 AALASAGL--E---RVD----AVVLATSTGDF--------------------CCP-----ATAPRVAARLGLVGALAFDL 108 (331)
T ss_dssp HHHHHHTC--S---CCS----EEEEECSSCSE--------------------EES-----CSHHHHHHHTTCTTSEEEEE
T ss_pred HHHHhCCc--c---cCC----EEEEEeCCCCC--------------------CCC-----hHHHHHHHHhCCCCCcEEEE
Confidence 99999998 3 333 68888764321 111 2578999999998 899999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+++|+|++.||+.|+++|++|++|.+||+|+|. +++. +. |+...+|+++|||++++|
T Consensus 109 ~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~-~s~~----------~~------------~~d~~~~~~~GdGA~A~v 165 (331)
T 2x3e_A 109 SAAATGFVYGLASVGSLISAGLADSALLVGVDT-FSHT----------LD------------PADRSTRALFGDGAGAVV 165 (331)
T ss_dssp ECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-GGGG----------SC------------TTCHHHHHHBCCEEEEEE
T ss_pred cCcChHHHHHHHHHHHHHHcCCCCEEEEEEeec-cccC----------CC------------ccccccceeeccccEEEE
Confidence 999999999999999999999999999999997 3332 11 112347999999999999
Q ss_pred eccchhHHhcCCeeeEEEEEEeeccCCC---CCCCcCc----------------Cc----------hhHHHHHhh-----
Q 012130 404 LEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPHP----------------DG----------KSAMSLRLN----- 449 (470)
Q Consensus 404 Le~l~~A~~~G~~I~a~I~G~a~~~dg~---~~t~P~p----------------~g----------~~~~~~~~~----- 449 (470)
|++.++| ++..|++. ...+||. +++.|.. +| +...+....
T Consensus 166 L~~~~~a--~~~~i~~~----~~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~agl 239 (331)
T 2x3e_A 166 LRAGDAE--EEGALLAF----DLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRRVLDRVGW 239 (331)
T ss_dssp EEEECTT--STTBEEEE----EEEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEecCCC--CCCceEEE----EEEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988765 45666554 4455653 4555532 12 111111111
Q ss_pred --ccccEEEEeeeccee
Q 012130 450 --FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 --~~i~~veahGtGT~l 464 (470)
-+|+|+.+|++||.+
T Consensus 240 ~~~did~~~~H~~~~~~ 256 (331)
T 2x3e_A 240 QASDLHHLVPHQANTRI 256 (331)
T ss_dssp CGGGCSEEEECCCCHHH
T ss_pred CHHHCCEEEEcCCCHHH
Confidence 289999999999975
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=186.10 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHh-CCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 235 FMLYLLTAGKKALAD-GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 235 ~~rl~L~aa~eALed-AG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
.+.|+++++++||+| +|++++. ++ +|++|+...... ....++.++++.
T Consensus 32 ~~~L~~~A~~~AL~~~AGl~~~d---Id----~vi~g~~~~~~~------------------------~~~~~a~~va~~ 80 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDLDETL---IS----DMILGVVSPVGD------------------------QGGDIARTAVLA 80 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTCCGGG---EE----EEEEECC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcCHHH---CC----EEEEEecCcccc------------------------ccCcHHHHHHHH
Confidence 467999999999999 9999873 33 688887632110 012357899999
Q ss_pred hCC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhh--------------------hHHhh----
Q 012130 314 LGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------------------LGGFV---- 367 (470)
Q Consensus 314 ~gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~--------------------~~~f~---- 367 (470)
+|+ .+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..... ..++.
T Consensus 81 lGlp~~~pa~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~~ 160 (407)
T 3svk_A 81 AGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADLI 160 (407)
T ss_dssp TTCCTTCEEEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHHH
T ss_pred cCCCCCCceEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHHH
Confidence 999 7899999999999999999999999999999999999998654110 00000
Q ss_pred --------------------------hcccccC--------C---CCCCCCCCcC-------------CCCC--------
Q 012130 368 --------------------------ACRALSQ--------R---NNDPTKASRP-------------WDIN-------- 389 (470)
Q Consensus 368 --------------------------~~~~Ls~--------~---~~~~~~~~rp-------------Fd~~-------- 389 (470)
+.+.+.. . ..+|+..+|+ |+..
T Consensus 161 a~~~~i~re~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~~ 240 (407)
T 3svk_A 161 ATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDD 240 (407)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC----------
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCccccccc
Confidence 0000000 0 0125666665 6532
Q ss_pred ------------------CCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh--
Q 012130 390 ------------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN-- 449 (470)
Q Consensus 390 ------------------adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~-- 449 (470)
.|...++||++++||+++++|+++|++++++|+|++.+++..+... .+....+.+++
T Consensus 241 ~~~~~~~~~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~~~~---~~~~~a~~~al~~ 317 (407)
T 3svk_A 241 VALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSDPVIML---TGPTPATRKVLDR 317 (407)
T ss_dssp ---CTTTTCSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC------CC---CTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEeccCCcccc---HHHHHHHHHHHHH
Confidence 3555699999999999999999999999999999999988643322 22222322222
Q ss_pred -----ccccEEEEeeeccee
Q 012130 450 -----FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 -----~~i~~veahGtGT~l 464 (470)
.+|+|+|+|.+-|..
T Consensus 318 Agl~~~dId~~e~hdaf~~~ 337 (407)
T 3svk_A 318 AGLTIDDIDLFELNEAFASV 337 (407)
T ss_dssp HTCCGGGCSEEEECCSBHHH
T ss_pred cCCCHHHCCEEEEeChhHHH
Confidence 299999999987754
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-20 Score=213.22 Aligned_cols=247 Identities=11% Similarity=0.050 Sum_probs=171.0
Q ss_pred CCCCcEEEEeecccCCCC-------------CCHHHHHHHH------HcCCCcceeCCCCCCCCCCccccccccCCCCCC
Q 012130 162 MKQKRVVVTGMGLVSPLG-------------HEPDVFYNNL------LEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g-------------~~~~~~w~~L------~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~ 222 (470)
+.+.++.|+|+|..+|.+ .+.+++|+.+ ..++++|.+...++...+.. ..|++..
T Consensus 599 ~~~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~------~~~~~~~ 672 (979)
T 3tsy_A 599 RAKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLE------EHPNIGA 672 (979)
T ss_dssp SCCSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHH------HCHHHHS
T ss_pred cccCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhh------cCccccc
Confidence 345689999999999999 4444455555 44566666543332211111 1233333
Q ss_pred CCCccc----cccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccc
Q 012130 223 WVAPKL----SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCV 298 (470)
Q Consensus 223 fi~p~e----a~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~ 298 (470)
++.++. .+.++....|+++|+++||++||++++ +++ .|+++++. ++..
T Consensus 673 ~~~~~~~~r~~~~~~~~~~la~~Aa~~AL~~agl~~~---dId----~ii~~t~~---------------------~~~~ 724 (979)
T 3tsy_A 673 YMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKS---KIT----HLVFCTTS---------------------GVEM 724 (979)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESS---------------------CCCS
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HCC----EEEEEeeC---------------------CCCC
Confidence 333433 333444666999999999999999986 333 47777642 1112
Q ss_pred cccchhhHHHHHHHHhCCCCcc---eeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC
Q 012130 299 PFATTNMGSAMLAMDLGWMGPN---YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375 (470)
Q Consensus 299 ~~~~~~~~a~~is~~~gl~Gps---~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~ 375 (470)
+ ..+.+|+..||++++. +.++++|+++++||..|+++|++|.++.|||+|+|......
T Consensus 725 p-----~~a~~v~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~-------------- 785 (979)
T 3tsy_A 725 P-----GADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTF-------------- 785 (979)
T ss_dssp S-----CHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTC--------------
T ss_pred C-----cHHHHHHHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhe--------------
Confidence 2 4688999999999765 99999999999999999999999999999999999732110
Q ss_pred CCCCCCCCcCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchh-------------
Q 012130 376 NNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKS------------- 442 (470)
Q Consensus 376 ~~~~~~~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~------------- 442 (470)
.+...+.++...+++++|||||++||++.+++..++..++....+.....+..+.+.+.+.+.+
T Consensus 786 ---~~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 862 (979)
T 3tsy_A 786 ---RGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLI 862 (979)
T ss_dssp ---CCCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHH
T ss_pred ---eCCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHH
Confidence 1112233333446789999999999999888877888999999999988888776666544322
Q ss_pred -----HHHHHhh-------ccccEEEEeeeccee
Q 012130 443 -----AMSLRLN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 443 -----~~~~~~~-------~~i~~veahGtGT~l 464 (470)
..+..+. .+|+|+.+|++++.+
T Consensus 863 ~~~~~~~~~~al~~agl~~~did~~~~Hq~~~~i 896 (979)
T 3tsy_A 863 SENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAI 896 (979)
T ss_dssp HHHHHHHHHHHHGGGTCCCGGGSEEEECCSCHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcccceEEECCCChHH
Confidence 1111111 299999999999865
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-17 Score=167.32 Aligned_cols=205 Identities=17% Similarity=0.194 Sum_probs=141.5
Q ss_pred CCCCcEEEEeecccCCCC-CCHHHHHHHHHc-----CCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHH
Q 012130 162 MKQKRVVVTGMGLVSPLG-HEPDVFYNNLLE-----GVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKF 235 (470)
Q Consensus 162 ~~~~~VaItGmg~~~P~g-~~~~~~w~~L~~-----G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~ 235 (470)
+..+.|.|+|+|...|.- .+.+++.+.+.. +.+. ..+. ...+...+. +..+. ...
T Consensus 8 m~~~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~-~~i~--~~tGi~~R~-----------~~~~~-----~~~ 68 (345)
T 3s21_A 8 MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKT-DVLG--DVAGIHARR-----------LWDQD-----VQA 68 (345)
T ss_dssp GSCSSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCC-CHHH--HTTCCSEEE-----------ECSSC-----CCH
T ss_pred ceecceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCH-HHHH--HhhCceeEE-----------ECCCC-----CCH
Confidence 445789999999999998 678888776532 2110 0000 000010000 00111 135
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++++||+++|++++ +++ .|++|+...++ .. ...+.+|+..+|
T Consensus 69 ~~La~~Aa~~al~~ag~~~~---~Id----~vi~~t~~~~~--------------------~~-----p~~a~~v~~~lG 116 (345)
T 3s21_A 69 SDAATQAARKALIDANIGIE---KIG----LLINTSVSRDY--------------------LE-----PSTASIVSGNLG 116 (345)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEECCSCCSC--------------------SS-----SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCC--------------------CC-----ChHHHHHHHHhC
Confidence 67999999999999999986 333 58888764221 11 135789999999
Q ss_pred CC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 316 l~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
+. +|++.|+++|+|++.||+.|+++|++|+++.+||+|+|.+.... .+...++++ +.+.|++||.+.+++
T Consensus 117 l~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~---~~~~~~~~~-----~~~~~~~f~~~~~~~ 188 (345)
T 3s21_A 117 VSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVY---EKTLERMTS-----PDVTEEEFRNELAAL 188 (345)
T ss_dssp CCTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHHH---HHHHHHHTC-----TTCCHHHHHHHHGGG
T ss_pred CCCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchhh---ccccccccC-----Cccchhhhhhhccce
Confidence 95 79999999999999999999999999999999999999854332 222233444 556899999999999
Q ss_pred eecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCC
Q 012130 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDA 430 (470)
Q Consensus 394 v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg 430 (470)
++|||++++||++.+.. ..+.. |.+.....|+
T Consensus 189 ~~GdGA~A~vl~~~~~~-~~~~~----i~~~~~~~~~ 220 (345)
T 3s21_A 189 TLGCGAAAMVMARSELV-PDAPR----YKGGVTRSAT 220 (345)
T ss_dssp GBCCEEEEEEEEEGGGS-TTSCE----EEEEEEEECG
T ss_pred eeccceeEEEEecCCCC-CCCcc----eeeeccccCc
Confidence 99999999999985442 11233 4555555554
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=164.94 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....|+.+++++||+++|++++ +++ .|++|+..+ +.. ...+.+|+..
T Consensus 112 ~~~~la~~Aa~~aL~~agl~~~---~Id----~vi~~t~~~---------------------~~~-----p~~a~~v~~~ 158 (393)
T 1ted_A 112 HAVPLAVDVSKRALAGLPYRAA---EIG----LLVLATSTG---------------------FIA-----PGVDVAIVKE 158 (393)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGG---GEE----EEEEEESSC---------------------CCS-----SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEeCC---------------------Ccc-----ChHHHHHHHH
Confidence 5678999999999999999875 222 466676531 111 1357899999
Q ss_pred hCCCCc--ceee-cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC
Q 012130 314 LGWMGP--NYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (470)
Q Consensus 314 ~gl~Gp--s~tV-~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a 390 (470)
||++++ .+.+ +++|+|++.||+.|+++|++|.+|.+||+|+|.+. +. + -|+.++
T Consensus 159 lGl~~~~~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~----------~------------~~~~~r 215 (393)
T 1ted_A 159 LGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCS-VN----------A------------VFADDI 215 (393)
T ss_dssp HTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECG-GG----------C------------CCCSSH
T ss_pred cCcCCCcceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEecc-cc----------C------------CCCCCH
Confidence 999985 5777 89999999999999999999999999999999732 11 0 034455
Q ss_pred C----cceecceeEeEeeccchhHHhcCCeeeEEEEEEeec--cCCC
Q 012130 391 D----GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT--SDAY 431 (470)
Q Consensus 391 d----G~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~--~dg~ 431 (470)
+ |+++|||++++||++.+++..+|. .+++|.+++.. .|+.
T Consensus 216 ~~~~~~~lfGDGA~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~~ 261 (393)
T 1ted_A 216 NDVVIHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTE 261 (393)
T ss_dssp HHHHHHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCT
T ss_pred HHhhhhhhhcCccEEEEEecCCCccccCc-ceeeeeccceEEcCCch
Confidence 5 899999999999998766533444 56788887554 6663
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-16 Score=155.50 Aligned_cols=171 Identities=15% Similarity=0.277 Sum_probs=121.3
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccc-cccCCHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKL-SKRMDKFMLYLLTAG 243 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~e-a~~mdp~~rl~L~aa 243 (470)
+|.|+|+|+.+|.. .+.+++|+.+.+.. +..-+.| +..+ .| |..+. +..-.....|+.+++
T Consensus 11 ~v~I~g~g~~lP~~~v~~~~l~~~l~~~~--~~~~~~~----i~~r-tg----------i~~r~~~~~~~~~~~la~~Aa 73 (333)
T 4dfe_A 11 YSRVLGTGSYLPPNRVTNQDLAKRLAEQG--IETSDEW----IVAR-TG----------IHARYFAEPDVTTSDLAFIAS 73 (333)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHHHHC-----CCCCHHH----HHHH-HC----------CSEEEECCTTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhcccc--CCCCHHH----hHHh-cC----------ceEEEEcCCCCCHHHHHHHHH
Confidence 79999999999997 78999999875411 1000000 0000 00 00110 011134678999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC--CCcce
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MGPNY 321 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl--~Gps~ 321 (470)
++||+++|++++ +++ .|++|+..+++ .. ...+.+|+..+|+ ++|++
T Consensus 74 ~~al~~ag~~~~---~Id----~vi~~t~~~~~--------------------~~-----p~~a~~v~~~lgl~~~~~~~ 121 (333)
T 4dfe_A 74 QRAIEAADIDPQ---SID----LIIVATSTPDF--------------------VF-----PSTACLLQNKLGIRNHGAAF 121 (333)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSSCSS--------------------SB-----SCHHHHHHHHTTCCSCCEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEeCCCCC--------------------CC-----CcHHHHHHHHhCCCCCCcEE
Confidence 999999999986 333 68888764322 11 1347899999999 68999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEe
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGaga 401 (470)
+|+++|+|++.||+.|+++|++|+++.+||+|+|.+.... -|+....++++|||+++
T Consensus 122 ~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------------------~~~d~~~~~lfGDGA~A 178 (333)
T 4dfe_A 122 DVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRIL-----------------------DFKDRTTCVLFGDGAGA 178 (333)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGC-----------------------CTTCTTTTTTBCEEEEE
T ss_pred EeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeecccccc-----------------------CcccccceeeeccccEE
Confidence 9999999999999999999999999999999999732111 12223467899999999
Q ss_pred Eeeccch
Q 012130 402 LLLEELE 408 (470)
Q Consensus 402 lvLe~l~ 408 (470)
+||++.+
T Consensus 179 ~vl~~~~ 185 (333)
T 4dfe_A 179 VILQASD 185 (333)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 9999854
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=147.37 Aligned_cols=205 Identities=15% Similarity=0.058 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHH
Q 012130 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (470)
Q Consensus 232 mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is 311 (470)
+++. .|+.+++++||+|||++++.++ .--.|++++...... .............+..++
T Consensus 40 ~s~~-dL~a~Ai~~AL~dAGl~p~~Vd---~vI~g~~~~~~~~~~-----------------~~~~~~~g~~~~~~~~va 98 (520)
T 4egv_A 40 MSSV-ELATEAAKAALHDCGADADTVA---RAIDTVAGTRQFEIS-----------------GPASAPLGVSSNYPRSVA 98 (520)
T ss_dssp CCHH-HHHHHHHHHHHHHTSSCHHHHH---HHCCEEEECCC-------------------------------CCHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHhCcCHHHcc---eEEEEEeeccccccc-----------------chhhhhhccccCHHHHHH
Confidence 3443 4888999999999999987333 222355554332100 001111223344577899
Q ss_pred HHhCCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhc---------------------
Q 012130 312 MDLGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVAC--------------------- 369 (470)
Q Consensus 312 ~~~gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~--------------------- 369 (470)
..+|+.+ |.++++.+|+|++.+|++|++.|++|+||++|+||+|.+.+...+......
T Consensus 99 ~~lGl~~~~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (520)
T 4egv_A 99 RNIGADPAHAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGI 178 (520)
T ss_dssp HHHTCCCSEEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC--------------------------------
T ss_pred HHcCCCCceEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchh
Confidence 9999986 677889999999999999999999999999999999997543211100000
Q ss_pred ----------------------------c------------------cccCCCCCCCCCC--------------------
Q 012130 370 ----------------------------R------------------ALSQRNNDPTKAS-------------------- 383 (470)
Q Consensus 370 ----------------------------~------------------~Ls~~~~~~~~~~-------------------- 383 (470)
+ ..... +|+...
T Consensus 179 a~~~~~~~g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~--np~a~~r~~~t~E~l~~l~p~~r~i~ 256 (520)
T 4egv_A 179 FDEYTIRHGLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAK--NPYSSAPTERSVEELLTVTASNRMIV 256 (520)
T ss_dssp --CTTGGGTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH--CTTSSSCCCCCHHHHHSCCSSSCEEE
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEeccccccc--CccccccCCCCHHHhcccCccccccc
Confidence 0 00000 011111
Q ss_pred cCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCC--CCCCCcCc---CchhHHHHHhh-------cc
Q 012130 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDA--YHMTEPHP---DGKSAMSLRLN-------FS 451 (470)
Q Consensus 384 rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg--~~~t~P~p---~g~~~~~~~~~-------~~ 451 (470)
.|+-.-.|...+.||++++||.+.+.|++.|.++++.|.+++..... ..+..|+. .++..++.+++ .|
T Consensus 257 ~p~~ta~nas~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~d 336 (520)
T 4egv_A 257 DPYPRLMVARDQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDD 336 (520)
T ss_dssp TTEEGGGCC--CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGG
T ss_pred CCcccccccCCCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHH
Confidence 11111123444689999999999999999999999988888876543 23333331 23333333332 29
Q ss_pred ccEEEEee
Q 012130 452 VQMKSLNG 459 (470)
Q Consensus 452 i~~veahG 459 (470)
|+++|+|.
T Consensus 337 id~~E~~d 344 (520)
T 4egv_A 337 VAAFDLYS 344 (520)
T ss_dssp EEEEEECC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=141.75 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=125.6
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHc---C---------------CCcceeCCCCCCCCCCcc-ccccccCCCCCCC-C
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLE---G---------------VSGISEIETFDCTSFPTK-IAAEIKSFSTDGW-V 224 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~---G---------------~s~i~~~~~~~~~~~~~~-~~g~i~~fd~~~f-i 224 (470)
++.|+|+|...|.- .+.+++++.+.. . +.+|++ |.-. .+.. +.+....||..++ +
T Consensus 12 ~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~--R~~~--~~~~~~~~~p~~~~~~~~~~ 87 (387)
T 3a5r_A 12 LATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEK--RYLH--VTEEILKENPNIAAYEATSL 87 (387)
T ss_dssp CEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCE--EECS--CCHHHHHHCHHHHSSSSSCH
T ss_pred CcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCc--eEEe--cChhhhccCcccccccCCCH
Confidence 58999999999997 455556555422 1 122221 1000 0000 0011122444433 4
Q ss_pred CccccccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchh
Q 012130 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTN 304 (470)
Q Consensus 225 ~p~ea~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 304 (470)
..++...+.....|+.+++.+||+++|++++ +++ .|++++..+ +.. .
T Consensus 88 ~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~---~Id----~li~~t~~~---------------------~~~-----p 134 (387)
T 3a5r_A 88 NVRHKMQVKGVAELGKEAALKAIKEWGQPKS---KIT----HLIVCCLAG---------------------VDM-----P 134 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSC---------------------CEE-----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEecCC---------------------CCC-----C
Confidence 5555566677889999999999999999876 333 577776532 111 1
Q ss_pred hHHHHHHHHhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCC
Q 012130 305 MGSAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTK 381 (470)
Q Consensus 305 ~~a~~is~~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~ 381 (470)
..+.+|+..+|++++ .+.|.++|+|++.||..|.++|++|.++.+||+|+|.+. ..
T Consensus 135 ~~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s-~~-------------------- 193 (387)
T 3a5r_A 135 GADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTT-TC-------------------- 193 (387)
T ss_dssp CHHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCT-TT--------------------
T ss_pred cHHHHHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccc-hh--------------------
Confidence 357899999999885 789999999999999999999999999999999999732 10
Q ss_pred CCcCCCC----CCCcceecceeEeEeeccch
Q 012130 382 ASRPWDI----NRDGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 382 ~~rpFd~----~adG~v~GEGagalvLe~l~ 408 (470)
...|+|. ...++++||||+++||++.+
T Consensus 194 ~~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~ 224 (387)
T 3a5r_A 194 FRGPSETHLDSMIGQAILGDGAAAVIVGADP 224 (387)
T ss_dssp CCCCCSSCCSSTTHHHHBCCEEEEEEEESSC
T ss_pred hcCCCccchhhccccceeccceeEEEEecCC
Confidence 0123332 33689999999999998754
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=140.81 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=101.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHH
Q 012130 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (470)
Q Consensus 228 ea~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a 307 (470)
....++....|+.+++.+||+++|++++ +++ .|++|+..+ +.. ...+
T Consensus 118 ~~~~~~~~~~La~~Aa~~AL~~agl~~~---~Id----~li~~t~~~---------------------~~~-----p~~a 164 (413)
T 1xes_A 118 QAMLAMEVPRLAKEAAEKAIQEWGQSKS---GIT----HLIFCSTTT---------------------PDL-----PGAD 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESCC---------------------CEE-----SCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEeCC---------------------Ccc-----chHH
Confidence 3344457788999999999999999876 333 577787632 111 1247
Q ss_pred HHHHHHhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCc
Q 012130 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (470)
Q Consensus 308 ~~is~~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~r 384 (470)
.+|+..+|++++ .+.|..+|+|++.||..|.++|++|.+|.+||+|+|.+.. . ... ++ .+
T Consensus 165 ~~v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~-~---------~~~-----~~--d~ 227 (413)
T 1xes_A 165 FEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAV-T---------FRG-----PS--ET 227 (413)
T ss_dssp HHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTT-T---------CCC-----CC--TT
T ss_pred HHHHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhh-h---------hcC-----CC--cc
Confidence 889999999885 7899999999999999999999999999999999997321 0 011 22 14
Q ss_pred CCCCCCCcceecceeEeEeeccchh
Q 012130 385 PWDINRDGFVMGEGAGVLLLEELEH 409 (470)
Q Consensus 385 pFd~~adG~v~GEGagalvLe~l~~ 409 (470)
+|+...+++++||||+++||++.+.
T Consensus 228 ~~~~~~~~~lfGDGA~A~vl~~~~~ 252 (413)
T 1xes_A 228 HLDSLVGQALFGDGASALIVGADPI 252 (413)
T ss_dssp CHHHHHHHHHBCCEEEEEEEESSCC
T ss_pred chhhcccceeEecccEEEEEecCCC
Confidence 5666678999999999999997543
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-12 Score=132.31 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....|+.+|+++||+++|++++. ++ .|++++...++ ..+ ..+.+|+..
T Consensus 116 ~~~~La~~Aa~~AL~~agi~~~d---Id----~vi~~t~t~~~--------------------~~p-----~~a~~v~~~ 163 (392)
T 3led_A 116 ILAEMAVTAAEQAIERWGKPRER---IG----AVLCACSNMQR--------------------AYP-----AMAIEVQNA 163 (392)
T ss_dssp HHHHHHHHHHHHHHHHHCSCGGG---EE----EEEEESSCCSC--------------------SBS-----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHH---CC----EEEEEecCCCC--------------------Ccc-----HHHHHHHHH
Confidence 35689999999999999999863 32 57777764221 111 257889999
Q ss_pred hCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 314 ~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
+|++.|++.|+.+|+|++.||..|.++|++|.++.+||+|+|.+ +.. +. +.| ....+
T Consensus 164 LGl~~~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~-S~~----------~d-----------~~d-r~t~~ 220 (392)
T 3led_A 164 LGLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEIC-SGH----------LN-----------FRD-RDSHF 220 (392)
T ss_dssp TTCCSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGG----------CC-----------TTC-TTTTT
T ss_pred hCCCCeEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhc-CCc----------CC-----------cCc-ccCCc
Confidence 99999999999999999999999999999999999999999973 211 11 111 12468
Q ss_pred eecceeEeEeeccch
Q 012130 394 VMGEGAGVLLLEELE 408 (470)
Q Consensus 394 v~GEGagalvLe~l~ 408 (470)
++|+||+++||++.+
T Consensus 221 lFGDGA~A~vl~~~~ 235 (392)
T 3led_A 221 IFGDVATAAIVERAD 235 (392)
T ss_dssp TBCEEEEEEEEEEGG
T ss_pred ccccccEEEEEEecC
Confidence 899999999999744
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=133.93 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeE-EEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCG-VLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvG-V~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
...|+++++.+||++ ++++ +|+ |++|+..+.+ .. ...+..|+..
T Consensus 51 ~~~la~~Aa~~aL~~--~~~~--------~Id~li~~t~~~~~--------------------~~-----p~~a~~v~~~ 95 (396)
T 1xpm_A 51 IVSMGANAAKDIITD--EDKK--------KIGMVIVATESAVD--------------------AA-----KAAAVQIHNL 95 (396)
T ss_dssp HHHHHHHHHHTTCCH--HHHH--------HEEEEEEECSSCSB--------------------SS-----SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCHH--------HCCEEEEEeCCCCC--------------------CC-----CCHHHHHHHH
Confidence 467899999999987 4433 444 5557653211 11 1357899999
Q ss_pred hCCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCC
Q 012130 314 LGWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (470)
Q Consensus 314 ~gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ad 391 (470)
||++ .|++.|.++|+|++.||..|.++|++|.++.+||+|+|. +... ++ ..+
T Consensus 96 lGl~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~--s~~~-----------------------~~-~~~ 149 (396)
T 1xpm_A 96 LGIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT--ARYG-----------------------LN-SGG 149 (396)
T ss_dssp TTCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE--ECCC-----------------------TT-CSS
T ss_pred hCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh--hccc-----------------------cC-CCC
Confidence 9997 499999999999999999999999999999999999995 1110 11 136
Q ss_pred cceecceeEeEeeccchhHHhcCCeeeEEEEEEeecc-CCCCCCCcCc------CchhHH---------HHHhh------
Q 012130 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS-DAYHMTEPHP------DGKSAM---------SLRLN------ 449 (470)
Q Consensus 392 G~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~-dg~~~t~P~p------~g~~~~---------~~~~~------ 449 (470)
++++||||+++||++. ..|++...|.+... |..+++.|++ +|.... ....+
T Consensus 150 ~~~~GdGA~A~vl~~~-------~~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl 222 (396)
T 1xpm_A 150 EPTQGAGAVAMVIAHN-------PSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGK 222 (396)
T ss_dssp GGGCEEEEEEEEEEES-------CSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccceEEEEeccC-------CceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999863 35777766655544 6666666755 454311 01111
Q ss_pred --ccccEEEEeeeccee
Q 012130 450 --FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 --~~i~~veahGtGT~l 464 (470)
-+|+|+-.|+++|.+
T Consensus 223 ~~~did~~~~H~~~~~~ 239 (396)
T 1xpm_A 223 SLADFASLCFHVPFTKM 239 (396)
T ss_dssp CGGGCSEEEECCSSHHH
T ss_pred CHHHCCEEEecCCchHH
Confidence 199999999999865
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-12 Score=124.98 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=115.7
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
..|.|+|+|...|.- .+.+++.+.+ +.+ +.| +. ...| .....+..+.+ ...|+.+++
T Consensus 3 ~~~~I~~~g~~lP~~~v~n~~~~~~~--~~~-----~~~----i~-~~~G----i~~R~~a~~~e------~~~La~~Aa 60 (321)
T 3il6_A 3 NYARISCTSRYVPENCVTNHQLSEMM--DTS-----AAW----IH-SRTG----ISERRIVTQEN------TSDLCHQVA 60 (321)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHT--TSC-----HHH----HH-HHHS----CSEEECCSSCC------HHHHHHHHH
T ss_pred CcEEEEEEEEECCCcEEcHHHHHHHh--CCC-----hhh----hh-hhcC----ceEEEECCCCC------HHHHHHHHH
Confidence 469999999999997 5777776653 111 000 00 0000 00000111111 577999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-Cccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~-Gps~t 322 (470)
++||+++|++++ +++ .|++|+...++ ..+ ..+.+++..+|++ .|.+.
T Consensus 61 ~~aL~~ag~~~~---~Id----~li~~t~~~~~--------------------~~p-----~~a~~v~~~lGl~~~~~~~ 108 (321)
T 3il6_A 61 KQLLEKSGKQAS---EID----FILVATVTPDF--------------------NMP-----SVACQVQGAIGATEAFAFD 108 (321)
T ss_dssp HHHHHHHTCCGG---GCC----EEEEECSSCSC--------------------SSS-----CHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHcCCCHH---HCC----EEEEEeCCCCc--------------------CCC-----cHHHHHHHHcCCCCceEEE
Confidence 999999999986 333 68888764221 111 2578899999997 68999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+.+|+|++.||..|+++|++|.++.+||+|+|.+ +.. +. + +.....+++|+|++++
T Consensus 109 v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~-s~~----------~~-----~-------~dr~~~~lfGDGA~A~ 165 (321)
T 3il6_A 109 ISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETF-SKM----------LD-----W-------TDRSTAVLFGDGAAGV 165 (321)
T ss_dssp ECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECG-GGG----------SC-----T-------TCTTTGGGBCCEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccc-ccc----------CC-----c-------cccccceeeccccEEE
Confidence 99999999999999999999999999999999983 211 11 1 1112457899999999
Q ss_pred eeccch
Q 012130 403 LLEELE 408 (470)
Q Consensus 403 vLe~l~ 408 (470)
||++.+
T Consensus 166 vl~~~~ 171 (321)
T 3il6_A 166 LIEAAE 171 (321)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 999744
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=125.38 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=115.5
Q ss_pred CCCCCCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHH
Q 012130 160 PHMKQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLY 238 (470)
Q Consensus 160 ~~~~~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl 238 (470)
|.+..+.|.|+|+|...|.- .+.+++.+.+. +.+ ...+. ...+...+ .+..+. .....|
T Consensus 24 ~~~~~~~v~I~gig~~lP~~~v~n~~l~~~~~-~~~-~~~i~--~~tGI~~R-----------~~a~~~-----~~~~~L 83 (365)
T 3gwa_A 24 PAAHPPRAAIADIAGHLPEQVLTNDVLAQLYP-DWP-AEKIL--AKTGIRER-----------RIAAPR-----ETAADL 83 (365)
T ss_dssp -----CEEEEEEEEEECCSEEEEHHHHHHHCT-TCC-HHHHH--HHHCCCEE-----------EECCTT-----CCHHHH
T ss_pred ccceeccEEEEEEEEeCCCcEEcHHHHHHHcc-CCC-HHHHH--HhcCccEE-----------EECCCC-----CCHHHH
Confidence 34556789999999999997 67777776541 110 00000 00000000 000111 124679
Q ss_pred HHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCC-
Q 012130 239 LLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM- 317 (470)
Q Consensus 239 ~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~- 317 (470)
+.+++.+||+++|++++ +++ .|++++..+++ ..+ ..+.+++..+|+.
T Consensus 84 a~~Aa~~aL~~ag~~~~---~Id----~vi~~t~~~~~--------------------~~p-----~~a~~v~~~lGl~~ 131 (365)
T 3gwa_A 84 AYEAARKLFAQGAVGAD---QVD----FVILCTQAPDY--------------------VLP-----TSACMLQHRLGIPT 131 (365)
T ss_dssp HHHHHHHHHHTTSCCGG---GCC----EEEEEESSCSC--------------------SBS-----CHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCC--------------------CCC-----cHHHHHHHHcCCCC
Confidence 99999999999999987 333 57888763221 111 2478899999997
Q ss_pred -CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceec
Q 012130 318 -GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (470)
Q Consensus 318 -Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~G 396 (470)
.|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . +. | ....+++|
T Consensus 132 ~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~-----~~------d-r~~~~lfG 188 (365)
T 3gwa_A 132 HAGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYL-----------H-----PL------D-KSVRTLFG 188 (365)
T ss_dssp TSEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGS-----------C-----TT------C-HHHHTTBC
T ss_pred CceEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccC-----------C-----cc------c-cccccccc
Confidence 78999999999999999999999999999999999999832211 0 11 1 11356799
Q ss_pred ceeEeEeeccch
Q 012130 397 EGAGVLLLEELE 408 (470)
Q Consensus 397 EGagalvLe~l~ 408 (470)
+||+++||++.+
T Consensus 189 DGAaA~vl~~~~ 200 (365)
T 3gwa_A 189 DGASATAVIAEH 200 (365)
T ss_dssp CEEEEEEEEEEC
T ss_pred ceeEEEEEEecC
Confidence 999999999743
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.4e-11 Score=121.71 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=94.8
Q ss_pred cCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHH
Q 012130 231 RMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (470)
Q Consensus 231 ~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~i 310 (470)
.++....|+.+|+.+||+++|++++ +++ .|++++..+ +.. ...+.+|
T Consensus 92 ~~~~~~~La~~Aa~~AL~~ag~~~~---dId----~li~~t~t~---------------------~~~-----p~~a~~v 138 (387)
T 3oit_A 92 AADAVPELAAEAAKKAIAEWGRPAA---DIT----HLVVTTNSG---------------------AHV-----PGVDFRL 138 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGG---GCC----EEEEEESSC---------------------CEE-----SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeeCC---------------------CCc-----ccHHHHH
Confidence 3346778999999999999999986 333 678887632 111 1357889
Q ss_pred HHHhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCC
Q 012130 311 AMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (470)
Q Consensus 311 s~~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd 387 (470)
+..+|+.+. .+.+..+|++++.||..|.++|++|.++.+||+|+|.+... ... ++. +.++
T Consensus 139 ~~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~----------~~~-----~~d--~~~~ 201 (387)
T 3oit_A 139 VPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMY----------FTG-----PDE--GCFR 201 (387)
T ss_dssp HHHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGT----------CCC-----CCS--SSCH
T ss_pred HHHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchh----------ccC-----ccc--cchH
Confidence 999999874 68999999999999999999999999999999999983210 000 110 1111
Q ss_pred CCCCcceecceeEeEeeccch
Q 012130 388 INRDGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 388 ~~adG~v~GEGagalvLe~l~ 408 (470)
.....+++|+||+++||++.+
T Consensus 202 ~~~~~~lFGDGAaA~vl~~~~ 222 (387)
T 3oit_A 202 TLLVQGLFGDGAAAVIVGADA 222 (387)
T ss_dssp HHHHHHHBCCEEEEEEEESSC
T ss_pred hhhcccccccceEEEEEecCC
Confidence 112467899999999999744
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=127.07 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH
Q 012130 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 233 dp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
+....|+.+|+++||+++|++++ +++ .|++++..+ +.. ...+.+|+.
T Consensus 100 ~~~~~La~~Aa~~aL~~ag~~~~---dId----~vi~~t~t~---------------------~~~-----p~~a~~v~~ 146 (393)
T 3ov2_A 100 EEIPRLAKEAAEKAIKEWGRPKS---EIT----HLVFCSISG---------------------IDM-----PGADYRLAT 146 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGG---GCC----EEEEEESSC---------------------CCB-----SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEEeCC---------------------CCC-----CCHHHHHHH
Confidence 45678999999999999999986 333 578887632 111 235788999
Q ss_pred HhCCCCc---ceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCC
Q 012130 313 DLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (470)
Q Consensus 313 ~~gl~Gp---s~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~ 389 (470)
.+|+.+. .+.|..+|++++.||..|.++|++|.++.+||+|+|.+.. .... |+. +.++..
T Consensus 147 ~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~----------~~~~-----~~d--~~~~~~ 209 (393)
T 3ov2_A 147 LLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVL----------SFRG-----PNE--GDFEAL 209 (393)
T ss_dssp HHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGG----------TCCC-----CCT--TCHHHH
T ss_pred HcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccch----------hccC-----Ccc--cchhhh
Confidence 9999875 6899999999999999999999999999999999998321 0011 111 011111
Q ss_pred CCcceecceeEeEeeccch
Q 012130 390 RDGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 390 adG~v~GEGagalvLe~l~ 408 (470)
...+++|+||+++||++.+
T Consensus 210 ~~~~lFGDGAaA~vl~~~~ 228 (393)
T 3ov2_A 210 AGQAGFGDGAGAVVVGADP 228 (393)
T ss_dssp HHHHHBCCEEEEEEEESSC
T ss_pred cccccccCccEEEEEEecC
Confidence 2467899999999999754
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-10 Score=117.71 Aligned_cols=163 Identities=14% Similarity=0.085 Sum_probs=110.8
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|.|.|+|..+|.- .+.+++-+.+ |.+ +. .+...+ | +..+ .+..+. . ....|+.+|+.
T Consensus 3 ~v~I~~ig~y~P~~~v~~~~l~~~~--g~~-----~~----~~~~g~-G-~~~~---~~~~~~----e-~~~~La~~Aa~ 61 (450)
T 2f82_A 3 NVGILAMDIYFPPTCVQQEALEAHD--GAS-----KG----KYTIGL-G-QDCL---AFCTEL----E-DVISMSFNAVT 61 (450)
T ss_dssp SCEEEEEEEECCSEEEEHHHHHHHT--TCC-----TT----TTTTTS-C-CCEE---ECCCTT----C-CHHHHHHHHHH
T ss_pred ceEEEEEEEECCCeeccHHHHHHHh--CCC-----HH----Hhhhhh-C-ceee---eeCCCC----C-CHHHHHHHHHH
Confidence 58999999999987 5677765542 221 11 110000 1 0000 000111 1 24579999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC----CCcc
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW----MGPN 320 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl----~Gps 320 (470)
+||+++|++++.+ + .|++|+..+.+ .....+..|+..||+ ..+.
T Consensus 62 ~aL~~agi~~~~I---d----~li~~t~t~~~-------------------------~~p~~a~~v~~~lgl~g~~~~~~ 109 (450)
T 2f82_A 62 SLLEKYKIDPKQI---G----RLEVGSETVID-------------------------KSKSIKTFLMQLFEKCGNTDVEG 109 (450)
T ss_dssp HHHHHTTCCGGGE---E----EEEEECCCCSC-------------------------SSSCHHHHHTHHHHTTTCCCCBC
T ss_pred HHHHHcCcCHHHC---C----EEEEEecCCCC-------------------------CCCcHHHHHHHHhCCcCCCCceE
Confidence 9999999987522 2 45567663211 012357888888898 3688
Q ss_pred eeecCCCchHHHHHHHHHHHHHcCCC--CEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecce
Q 012130 321 YSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (470)
Q Consensus 321 ~tV~tACsSsl~AI~~A~~~Lr~G~~--d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEG 398 (470)
+.|..+|+|++.||..|.++|++|.+ +.+||+|+|.+. .+ ...++.+.|||
T Consensus 110 ~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~-------------~~--------------~~~~~~~fGDG 162 (450)
T 2f82_A 110 VDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV-------------YA--------------EGPARPTGGAA 162 (450)
T ss_dssp CEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC-------------CS--------------SSTTGGGCEEE
T ss_pred EEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc-------------cc--------------CCCCCcccccc
Confidence 99999999999999999999999998 999999999731 11 12367889999
Q ss_pred eEeEeeccch
Q 012130 399 AGVLLLEELE 408 (470)
Q Consensus 399 agalvLe~l~ 408 (470)
|+++||++.+
T Consensus 163 A~A~ll~~~~ 172 (450)
T 2f82_A 163 AIAMLIGPDA 172 (450)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEeccCC
Confidence 9999998643
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=114.10 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++++||+++|++++ +++ .|++|+..+++ .. + ..+.+++..+
T Consensus 58 ~~~La~~Aa~~aL~~ag~~~~---~Id----~vi~~t~~~~~--------------------~~----p-~~a~~v~~~l 105 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQ---DIE----LIIVATTSHSH--------------------AY----P-SAACQVQGLL 105 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGG---GCC----EEEEECSCCSC--------------------SS----S-CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCC--------------------CC----c-cHHHHHHHHh
Confidence 467999999999999999986 333 68888764321 11 1 2578899999
Q ss_pred CCC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 315 gl~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
|++ .|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+... +. + +.....+
T Consensus 106 Gl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~-----------~~-----~-------~d~~~~~ 162 (323)
T 3il3_A 106 NIDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRK-----------LD-----E-------TDRSTVV 162 (323)
T ss_dssp TCSSCEEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGS-----------CC-----T-------TCTTTTT
T ss_pred CCCCccEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeeccccc-----------cC-----c-------ccccccc
Confidence 995 6899999999999999999999999999999999999973210 10 1 1112467
Q ss_pred eecceeEeEeeccch
Q 012130 394 VMGEGAGVLLLEELE 408 (470)
Q Consensus 394 v~GEGagalvLe~l~ 408 (470)
++|+||+++||++.+
T Consensus 163 lfGDGA~A~vl~~~~ 177 (323)
T 3il3_A 163 LFGDGAGAVILEASE 177 (323)
T ss_dssp TBCEEEEEEEEEEES
T ss_pred ccccceEEEEEEEcC
Confidence 899999999999743
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-10 Score=113.00 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....|+.+++.+||+++|++++.+ + .|++++.... .|... ..+.+++..
T Consensus 53 ~~~~La~~Aa~~aL~~ag~~~~dI---d----~vi~~t~~~~------------------~~d~~------~~a~~v~~~ 101 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDVDPADV---S----LVLHSSLWFQ------------------GIDLW------PAASYVAHE 101 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGE---E----EEEEECSSCC------------------SSSSS------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHC---C----EEEEEeccCC------------------Ccccc------cHHHHHHHH
Confidence 356799999999999999988633 2 4677765200 11000 247789999
Q ss_pred hCCC-CcceeecCCCchHHHHHHHHHHHHHcCCCC--EEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC
Q 012130 314 LGWM-GPNYSISTACATSNFCILNAANHIIRGEAN--VMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (470)
Q Consensus 314 ~gl~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d--~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a 390 (470)
+|+. .|.+.|+.+|+|++.||..|.++|++|.++ .+||+|+|.+..+. + ..|+ ++
T Consensus 102 lG~~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~----------~-----------~~~~-~~ 159 (357)
T 3s3l_A 102 AVGRHVPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR----------I-----------DRWN-SV 159 (357)
T ss_dssp HTCSSSCEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTT----------C-----------CTTT-SS
T ss_pred hCCCCCcEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEecccccc----------c-----------cccc-cc
Confidence 9996 488999999999999999999999999999 99999999832111 1 1122 23
Q ss_pred CcceecceeEeEeeccc
Q 012130 391 DGFVMGEGAGVLLLEEL 407 (470)
Q Consensus 391 dG~v~GEGagalvLe~l 407 (470)
..+++||||+++||++.
T Consensus 160 ~~~lfGDGA~A~vl~~~ 176 (357)
T 3s3l_A 160 DVTMYGDGAAALVLSTR 176 (357)
T ss_dssp SSCCBCCEEEEEEEESS
T ss_pred CCcccccccEEEEEecC
Confidence 57899999999999974
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.5e-10 Score=113.59 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++.+||+++|++++ +++ .|++|+..+++ ..+ ..+.+++..+
T Consensus 74 ~~~La~~Aa~~aL~~agl~~~---dId----~vi~~t~~~~~--------------------~~p-----~~a~~v~~~l 121 (359)
T 3h78_A 74 VSALMVPAARQAIEAAGLLPE---DID----LLLVNTLSPDH--------------------HDP-----SQACLIQPLL 121 (359)
T ss_dssp THHHHHHHHHHHHHHTTCCGG---GCC----EEEEECSSCSS--------------------SBS-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHH---HCC----EEEEEeCCCCC--------------------CCC-----cHHHHHHHHc
Confidence 357999999999999999986 333 68888764211 111 2578899999
Q ss_pred CCC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 315 gl~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
|+. .|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+... +. +.... ....+
T Consensus 122 Gl~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~-----------~~-----~~d~~-----~~t~~ 180 (359)
T 3h78_A 122 GLRHIPVLDIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKR-----------MD-----CSDRG-----RNLSI 180 (359)
T ss_dssp TCCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGG-----------CC-----CSTTT-----HHHHT
T ss_pred CCCCCcEEEECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhccc-----------CC-----ccccc-----ccccc
Confidence 996 4899999999999999999999999999999999999973211 11 11000 11346
Q ss_pred eecceeEeEeeccch
Q 012130 394 VMGEGAGVLLLEELE 408 (470)
Q Consensus 394 v~GEGagalvLe~l~ 408 (470)
++|+||+++||++.+
T Consensus 181 lfGDGAaA~vl~~~~ 195 (359)
T 3h78_A 181 LLGDGAGAVVVSAGE 195 (359)
T ss_dssp TBCEEEEEEEEECCS
T ss_pred eecceeEEEEEEecC
Confidence 799999999999743
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=115.73 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++.+||+++|++++ +++ .|++|+..+++ .. ...+.+++..+
T Consensus 66 ~~~La~~Aa~~aL~~agi~~~---~Id----~vi~~t~~~~~--------------------~~-----p~~a~~v~~~l 113 (354)
T 4efi_A 66 AGDLCRKAGEKLLAGLGWQAD---SID----ALIFVSQTPNY--------------------RL-----PATAFVLQAEL 113 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSSCSC--------------------SS-----SCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCCCCC--------------------CC-----CcHHHHHHHHc
Confidence 457999999999999999986 333 68888764321 11 13478899999
Q ss_pred CC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCc
Q 012130 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (470)
Q Consensus 315 gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG 392 (470)
|+ ..|.+.|..+|+|++.||..|.++|++|.++.+||+|+|.+. .. +. ++ | ....
T Consensus 114 Gl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s-~~----------~~-----~~------d-~~~~ 170 (354)
T 4efi_A 114 DLPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTIS-KM----------ID-----PT------D-RSTS 170 (354)
T ss_dssp TCCTTSEEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGG-GG----------CC-----TT------C-HHHH
T ss_pred CcCCCccEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhc-cc----------CC-----cc------c-cccc
Confidence 99 478999999999999999999999999999999999999832 11 10 11 1 1235
Q ss_pred ceecceeEeEeeccch
Q 012130 393 FVMGEGAGVLLLEELE 408 (470)
Q Consensus 393 ~v~GEGagalvLe~l~ 408 (470)
+++|+|++++||++.+
T Consensus 171 ~lfGDGA~A~vl~~~~ 186 (354)
T 4efi_A 171 LLFGDAGTMTALETSN 186 (354)
T ss_dssp TTBCCEEEEEEEEECC
T ss_pred cccccceeEEEEeecC
Confidence 7899999999999743
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-09 Score=106.79 Aligned_cols=118 Identities=25% Similarity=0.450 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+|+.+||+++|++++ +++ .|++++..+++ ..| ..+.+|...|
T Consensus 62 ~~~la~~Aa~~aL~~ag~~~~---dId----~li~~t~t~~~--------------------~~P-----~~a~~v~~~L 109 (350)
T 4ewp_A 62 VPVMAVGAAREALERAGLQGS---DLD----AVIVSTVTFPH--------------------ATP-----SAAALVAHEI 109 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCCGG---GCS----EEEEECSCCSC--------------------SSS-----CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeccCCC--------------------CCC-----chHHHHHHHh
Confidence 346999999999999999987 333 46777664221 111 2478899999
Q ss_pred CCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 315 gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
|++. +++.|..+|++++.||..|.++|++|..+.+||.++|.+ +.. +. +.| ....+
T Consensus 110 Gl~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~-s~~----------~d-----------~~~-~~~~~ 166 (350)
T 4ewp_A 110 GATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERL-SDV----------VD-----------PTD-RSISF 166 (350)
T ss_dssp TCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEG-GGG----------CC-----------TTC-TTTGG
T ss_pred CCCCceEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeec-eec----------cc-----------ccc-ccccc
Confidence 9974 788899999999999999999999999999999999972 111 11 111 23467
Q ss_pred eecceeEeEeeccc
Q 012130 394 VMGEGAGVLLLEEL 407 (470)
Q Consensus 394 v~GEGagalvLe~l 407 (470)
++|+|++++||++.
T Consensus 167 lfgDGA~A~vl~~~ 180 (350)
T 4ewp_A 167 LLGDGAGAVIVAAS 180 (350)
T ss_dssp GBCEEEEEEEEEEE
T ss_pred ccccchheeeeecc
Confidence 89999999999864
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.7e-09 Score=109.48 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+|+.+||+++|++++ +++ .|+++++. ++ ..+ ..+.+|...||
T Consensus 111 ~~La~~Aa~~AL~~agi~~~---dId----~li~~t~t-~~--------------------~~P-----~~a~~v~~~LG 157 (465)
T 3e1h_A 111 VPLAVEASRKAMAEARLVPA---QIT----HMVSTTCT-DS--------------------ANP-----GYDHYVAKELG 157 (465)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSS-CC--------------------CSS-----CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeeC-CC--------------------CCC-----cHHHHHHHHhC
Confidence 47999999999999999986 333 57777763 11 111 24788999999
Q ss_pred CCC-c-ceee-cCCCchHHHHHHHHHHHHHc----CCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCC
Q 012130 316 WMG-P-NYSI-STACATSNFCILNAANHIIR----GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (470)
Q Consensus 316 l~G-p-s~tV-~tACsSsl~AI~~A~~~Lr~----G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~ 388 (470)
++. + .+.| ..+|++++.||..|.++|++ |.++.+||+|+|.+ +...-....... ...+.
T Consensus 158 l~~~~~~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~-S~~~~~~~~~~~-------------~~~~d 223 (465)
T 3e1h_A 158 LSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVS-TTMVRSELESID-------------ALQET 223 (465)
T ss_dssp CCTTCEEEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECC-GGGHHHHHHHHH-------------HHTCC
T ss_pred CCCCeeEEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeec-chhcCccccccc-------------ccccc
Confidence 986 4 5788 79999999999999999997 99999999999984 332211111000 01111
Q ss_pred CCCcceecceeEeEeeccch
Q 012130 389 NRDGFVMGEGAGVLLLEELE 408 (470)
Q Consensus 389 ~adG~v~GEGagalvLe~l~ 408 (470)
....+++|+||+++||++.+
T Consensus 224 ~~t~~LFGDGAaAvVl~~~~ 243 (465)
T 3e1h_A 224 RIGIALFSDCASAVILSNGI 243 (465)
T ss_dssp CCHHHHBCCEEEEEEEECCT
T ss_pred cccccccccceeEEEEEccC
Confidence 23567899999999999743
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.3e-09 Score=107.12 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHH
Q 012130 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (470)
Q Consensus 234 p~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~ 313 (470)
....|+.+|+.+||+++|++++ +++ .|+++++.+ +.. ...+.+|+..
T Consensus 136 ~~~~La~~Aa~~AL~~agi~~~---dId----~li~~t~t~---------------------~~~-----P~~a~~v~~~ 182 (413)
T 3v7i_A 136 AVQAYGERAARGALQIAGLDVA---DVD----CLITSNSTT---------------------PAL-----PGLDVALANR 182 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECCSS---------------------CCS-----SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcCHH---HCC----EEEEEccCC---------------------CCc-----CHHHHHHHHH
Confidence 4557999999999999999986 333 688887632 111 1247889999
Q ss_pred hCCCC--cceee-cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC
Q 012130 314 LGWMG--PNYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (470)
Q Consensus 314 ~gl~G--ps~tV-~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a 390 (470)
+|+.. +.+.| ..+|++++.||..|.++|++|.++.+||+|+|.+. .. + ++-|.+.
T Consensus 183 LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S-~~----------~-----------~~~d~~~ 240 (413)
T 3v7i_A 183 LPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALS-TT----------Y-----------QPADDTL 240 (413)
T ss_dssp TTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGG-GG----------C-----------CSSCCST
T ss_pred hCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEeccc-cc----------c-----------Cccccch
Confidence 99987 35777 99999999999999999999999999999999832 11 0 1111111
Q ss_pred C----cceecceeEeEeeccch
Q 012130 391 D----GFVMGEGAGVLLLEELE 408 (470)
Q Consensus 391 d----G~v~GEGagalvLe~l~ 408 (470)
+ ..++|+||+++||++.+
T Consensus 241 ~~lv~~~LFGDGAaAvvl~~~~ 262 (413)
T 3v7i_A 241 ESLIVRLLFADTAVAAVVTGRP 262 (413)
T ss_dssp THHHHHHHBCCEEEEEEEESSC
T ss_pred hhhhcceeeccccEEEEEEecC
Confidence 1 67899999999998743
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=104.68 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=108.0
Q ss_pred cEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 166 ~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
.|.|+|+|..+|.- .+.+++-+.+ |.+. .|-... .| +.. ..+..+.| ....|+.+|+.
T Consensus 7 ~v~I~~~g~y~P~~~v~~~~l~~~~--g~~~-----~~~~~~-----~G-i~~---r~~~~~~e-----~~~~La~~Aa~ 65 (388)
T 3v4n_A 7 TIGIDKISFFVPPYYIDMTALAEAR--NVDP-----GKFHIG-----IG-QDQ---MAVNPISQ-----DIVTFAANAAE 65 (388)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHT--TSCT-----HHHHTT-----TC-CCE---EECCCTTC-----CHHHHHHHHHH
T ss_pred eEEEEEEEEECCCeEEcHHHHHHHh--CCCH-----HHHHHH-----hC-ceE---EEECCCCC-----CHHHHHHHHHH
Confidence 79999999999996 5777765543 2110 000000 00 000 00001111 24578999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC--ccee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNYS 322 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G--ps~t 322 (470)
+||+++| ++ +++ .|++|+..+++ .. ...+..|+..||+.+ +.+.
T Consensus 66 ~aL~~a~--~~---~Id----~li~~t~t~~~--------------------~~-----ps~a~~v~~~LGl~~~~~~~d 111 (388)
T 3v4n_A 66 AILTKED--KE---AID----MVIVGTESSID--------------------ES-----KAAAVVLHRLMGIQPFARSFE 111 (388)
T ss_dssp TTCCHHH--HH---HEE----EEEEECSSCSB--------------------SS-----SCHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHhCC--cc---cCC----EEEEEeccCCC--------------------cC-----ccHHHHHHHHcCCCCCceEee
Confidence 9999987 43 222 57777764221 01 134788999999986 8889
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|..+|++++.||..|.++|++|.++.+||+|+|.+.. -++ ..+.+..|+||+++
T Consensus 112 v~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~-------------------------~~~-~~~~~lfGDGA~A~ 165 (388)
T 3v4n_A 112 IKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKY-------------------------GLN-SGGEPTQGAGAVAM 165 (388)
T ss_dssp EESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECC-------------------------CTT-CTTGGGCEEEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhcc-------------------------cCC-CCCCCccccceeEE
Confidence 9999999999999999999999999999999997311 011 12357899999999
Q ss_pred eecc
Q 012130 403 LLEE 406 (470)
Q Consensus 403 vLe~ 406 (470)
||++
T Consensus 166 ll~~ 169 (388)
T 3v4n_A 166 LVSS 169 (388)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 9987
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=94.93 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+|+.+||++||++++ +++ .|++|+.. ++.. .+..+...+
T Consensus 55 ~sdLa~~Aa~~AL~~AGi~~~---DID----~II~gt~t---------------------~q~~-------~A~~va~~L 99 (347)
T 3lma_A 55 ERKLMEDAVQSALSKQNLKKE---DID----IFLAGDLL---------------------NQNV-------TANYVARHL 99 (347)
T ss_dssp HHHHHHHHHHHHHHTTTCCGG---GCS----EEEEEESS---------------------SSST-------THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHH---HCC----EEEEEeCC---------------------Cchh-------HHHHHHHHh
Confidence 356899999999999999987 343 57788753 1111 355566666
Q ss_pred CCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcce
Q 012130 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (470)
Q Consensus 315 gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v 394 (470)
+ -|.+.|..+|+|++.||..|..+|++|.+|.+||+|+|.+........|. ...+..+|... -.
T Consensus 100 g--ipafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p----------~e~g~q~p~ta----~~ 163 (347)
T 3lma_A 100 K--IPFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYP----------TEYGGQKPGTA----TS 163 (347)
T ss_dssp C--CCEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC------------------------------
T ss_pred C--CCEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCc----------chhcccCCchh----cE
Confidence 4 38999999999999999999999999999999999999844322110000 01122333322 22
Q ss_pred ecceeEeEeeccc
Q 012130 395 MGEGAGVLLLEEL 407 (470)
Q Consensus 395 ~GEGagalvLe~l 407 (470)
.++|+|++||++.
T Consensus 164 t~dGAGA~VL~~~ 176 (347)
T 3lma_A 164 TVTGSGAVVLSQQ 176 (347)
T ss_dssp CCCEEEEEEEESS
T ss_pred EccceeEEEEEec
Confidence 4589999999963
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=98.45 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=106.3
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
..|.|.|+|+.+|.- .+.+++.+.. |.+. . .+. ...| +..+ .+..+. .....|+.+|+
T Consensus 23 ~~vgI~aig~y~P~~~v~~~el~~~~--g~~~-----~----~~~-~~~G-i~~r---~~~~~~-----e~~~~La~~Aa 81 (478)
T 2p8u_A 23 MDVGIVALEIYFPSQYVDQAELEKYD--GVDA-----G----KYT-IGLG-QAKM---GFCTDR-----EDINSLCMTVV 81 (478)
T ss_dssp HCCEEEEEEEECCSEEEEHHHHHHHH--TCCT-----T----CCC-CCCC-CCEE---ECCCTT-----CCHHHHHHHHH
T ss_pred CceEEEEEEEECCCeEecHHHHHHHh--CCCh-----h----Hhe-cccC-ceEE---EeCCCC-----CCHHHHHHHHH
Confidence 469999999999986 5777776543 2210 1 110 0011 1100 001111 12457999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC---CC-c
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW---MG-P 319 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl---~G-p 319 (470)
.+||+++|++++.++ .|++|+..+.+. ....+..|...|+. .+ +
T Consensus 82 ~~aL~~agi~~~dId-------~li~~T~t~~~~-------------------------~ps~a~~v~~~L~~lG~~~~~ 129 (478)
T 2p8u_A 82 QNLMERNNLSYDCIG-------RLEVGTETIIDK-------------------------SKSVKTNLMQLFEESGNTDIE 129 (478)
T ss_dssp HHHHHHTTCCGGGEE-------EEEEECSCCSCS-------------------------SSCHHHHHGGGTTTTTCCCCB
T ss_pred HHHHHHcCCCHHHCC-------EEEEEccCCccc-------------------------CccHHHHHHHHHhhcCCCCce
Confidence 999999999876222 466776642210 11235667755554 32 6
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCC--CCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecc
Q 012130 320 NYSISTACATSNFCILNAANHIIRGE--ANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~--~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GE 397 (470)
.+.|..+|++++.||..|.++|++|. .+.+||.|+|.. . |+........|+
T Consensus 130 ~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia---------------~------------~~~~~~~~~fGd 182 (478)
T 2p8u_A 130 GIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA---------------V------------YATGNARPTGGV 182 (478)
T ss_dssp CCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE---------------C------------CCSSTTGGGCEE
T ss_pred EEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee---------------c------------ccCCCCCCcccc
Confidence 78899999999999999999999999 999999999941 0 011113467999
Q ss_pred eeEeEeeccc
Q 012130 398 GAGVLLLEEL 407 (470)
Q Consensus 398 GagalvLe~l 407 (470)
||+++||++.
T Consensus 183 GA~A~Ll~~~ 192 (478)
T 2p8u_A 183 GAVALLIGPN 192 (478)
T ss_dssp EEEEEEEESS
T ss_pred eeEEEEEecC
Confidence 9999999863
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=89.79 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=101.9
Q ss_pred CcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 165 ~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
+.|-|.|+|..+|.- .+.+++-+.. |.+ ...+..+. | |. ...+.++.| | ..-|+.+|+
T Consensus 4 ~~VgI~~~g~y~P~~~v~~~~l~~~~--~~~---------~~~i~~~~-G-i~---~r~~~~~~E----~-~~~ma~~Aa 62 (460)
T 2wya_A 4 KDVGILALEVYFPAQYVDQTDLEKYN--NVE---------AGKYTVGL-G-QT---RMGFCSVQE----D-INSLCLTVV 62 (460)
T ss_dssp SSCEEEEEEEECCSEEEEHHHHHHHT--TCC---------TTCCCCCC-C-CC---EEECCCTTC----C-HHHHHHHHH
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHh--CCC---------HHHHHHhh-C-cE---EEEECCCCC----C-HHHHHHHHH
Confidence 579999999999998 5667665432 111 11111111 1 00 000111222 2 345999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCCCC----c
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG----P 319 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl~G----p 319 (470)
.+||+++|++++.++ -|+++|..+.+ ..+ ..+..|...||+.| +
T Consensus 63 ~~al~~a~i~~~~Id-------~ii~aT~t~~~--------------------~~p-----s~a~~v~~~l~~~g~~~~~ 110 (460)
T 2wya_A 63 QRLMERIQLPWDSVG-------RLEVGTETIID--------------------KSK-----AVKTVLMELFQDSGNTDIE 110 (460)
T ss_dssp HHHHHHHTCCGGGEE-------EEEEECSCCSC--------------------SSS-----CHHHHHGGGTGGGTCCCCB
T ss_pred HHHHHHcCCCHHHCC-------EEEEEeCCCCC--------------------CCC-----chHHHHHHHHhccCCCCee
Confidence 999999999986222 36778764321 111 23677888888765 3
Q ss_pred ceeecCCCchHHHHHHHHHHHHHcCCCCE--EEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecc
Q 012130 320 NYSISTACATSNFCILNAANHIIRGEANV--MLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (470)
Q Consensus 320 s~tV~tACsSsl~AI~~A~~~Lr~G~~d~--aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GE 397 (470)
++-+..||++++.||..|.++|++|..+. +|+++.+. +. |.........|+
T Consensus 111 a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~----------------~~-----------~~d~~~~~~~Gd 163 (460)
T 2wya_A 111 GIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDI----------------AV-----------YPSGNARPTGGA 163 (460)
T ss_dssp CCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE----------------EC-----------CCSSTTGGGCEE
T ss_pred EechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccc----------------cc-----------cccccccccCcc
Confidence 57789999999999999999999998764 44444432 10 111223445699
Q ss_pred eeEeEeeccc
Q 012130 398 GAGVLLLEEL 407 (470)
Q Consensus 398 GagalvLe~l 407 (470)
|++++++++.
T Consensus 164 GA~A~l~~~~ 173 (460)
T 2wya_A 164 GAVAMLIGPK 173 (460)
T ss_dssp EEEEEEEESS
T ss_pred hHHhhhcccC
Confidence 9999999863
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0019 Score=51.76 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=41.3
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+.+..|.++ +|||+++|+++|++...|+. + |.+.+|++ ||...|+
T Consensus 41 i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~-l----~~~~l~~~-~ti~~la 87 (95)
T 2ju1_A 41 VRATTPFKELGFDSLAAVRLRNLLNAATGLR-L----PSTLVFDH-PNASAVA 87 (95)
T ss_dssp CCSSSCHHHHTCSSHHHHHHHHHHGGGTSSC-C----CTTHHHHC-SSHHHHH
T ss_pred CCCCCCHHHcCCcHHHHHHHHHHHHHHHCCC-C----ChhHHhcC-CCHHHHH
Confidence 4557889999 99999999999999999987 6 88889999 9998888
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.00099 Score=53.80 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
...+..|.++ +|||++||++||+...+|+. + |.+.+|.. |...|+
T Consensus 27 I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~-l----p~~~l~~~--Ti~~La 72 (91)
T 2cg5_B 27 VNLDSSLADLGLDALMSVEVRQTLERELNLV-L----SVREVRQL--TLRKLQ 72 (91)
T ss_dssp SCTTSBTTTTTCCHHHHHHHHHHHHHHHCCC-C----CHHHHHTC--BHHHHH
T ss_pred CCCCCCHHHhCCcchHHHHHHHHHHHHHCCC-C----CHHHHHhC--CHHHHH
Confidence 3456788899 99999999999999999998 7 88887773 777776
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.02 Score=52.92 Aligned_cols=47 Identities=6% Similarity=-0.025 Sum_probs=41.9
Q ss_pred CCCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
..+.+..|.++ +|||+++|+++|++...|+. + |.+.+|++ ||...|+
T Consensus 45 ~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~-l----~~~~~~~~-~Ti~~la 92 (212)
T 2l22_A 45 QIRDGSRFLELGLDSVIAAQWIREINKHYQLK-I----PADGIYTY-PVFKAFT 92 (212)
T ss_dssp SCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCC-C----CTTHHHHC-CBHHHHH
T ss_pred HcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCC-C----CHHHHHcC-CCHHHHH
Confidence 34557788899 99999999999999999988 7 88899999 9999998
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.016 Score=45.56 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=40.2
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCc--eEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGF--SSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~--t~~F~~~ptp~~la 126 (470)
.+.+..|.++ +|||.+++++++++...|+. + +. +.+|++ ||...|+
T Consensus 31 i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~-l----~~~~~~l~~~-~Tv~~la 79 (89)
T 2kr5_A 31 LTDDSNFADMGIDSLSSMVIGSRFREDLGLD-L----GPEFSLFIDC-TTVRALK 79 (89)
T ss_dssp CCTTCBHHHHTCCHHHHHHHHHHHHHTTCCC-C----CSSCCTTTSC-CBHHHHH
T ss_pred CCCCCCHHHcCccHHHHHHHHHHHHHHHCCC-C----CchHHHHHcC-CCHHHHH
Confidence 3457788899 99999999999999999988 6 77 788999 9998888
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.011 Score=46.33 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=39.8
Q ss_pred CCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 76 GSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 76 ~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
+.+..|.++ +|||.+++++++++...|+. + |.+.+|++ ||...|+
T Consensus 35 ~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~-i----~~~~~~~~-~ti~~la 80 (88)
T 2afd_A 35 DMEESFDNYDLNSSKALILLGRLEKWLGKE-L----NPVLIFNY-PTIAQLA 80 (88)
T ss_dssp CTTSCGGGTTCCSTHHHHHHHHHHHHTTSC-C----CGGGTTTC-CSHHHHH
T ss_pred CCCCCHHHcCccHHHHHHHHHHHHHHHCCC-c----CHHHHHhC-CCHHHHH
Confidence 456778889 99999999999999999987 6 88889999 9998888
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.018 Score=46.10 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=40.4
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+.+..|.++ +|||.++++++|++...|+. + +.+.+|++ ||...|+
T Consensus 41 i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~-l----~~~~l~~~-~ti~~la 87 (99)
T 2liu_A 41 IAEDQKFVDLGLDSIVGVEWTTTINQTYNLN-L----KATKLYDY-PTLLELS 87 (99)
T ss_dssp CCSSSCHHHHTCCHHHHHHHHHHHHHHHTCC-C----CHHHHHHC-CSHHHHH
T ss_pred cCCCCCHHHhCccHHHHHHHHHHHHHHHCCC-c----CHHHHHhC-CCHHHHH
Confidence 3456788899 99999999999999999987 6 88889999 8998887
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.014 Score=46.76 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=41.3
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+.++.|.++ .|||+++++.++++...|+. + +...+|.+ ||...|+
T Consensus 34 i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~-l----~~~~l~~~-pTi~~la 80 (93)
T 4i4d_A 34 VGPHEDFAALGGNSIHAIXITNRVEELVDAE-L----SIRVLLET-RTVAGMT 80 (93)
T ss_dssp CCTTCCTTTTTCCHHHHHHHHHHHHHHHTSC-C----CHHHHHHH-CSHHHHH
T ss_pred CCCCCCHHHcCCcHHHHHHHHHHHHHHhCCC-C----CHHHHHcC-CCHHHHH
Confidence 4567788899 99999999999999999987 6 88889999 9999998
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=89.03 E-value=0.14 Score=41.08 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=40.1
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
...+..|.++ +|||..+|+..++...+|+. + |...+|++ +|+..++
T Consensus 28 i~~d~~~~dlG~DSL~~vel~~~le~~fgi~-i----~~~~l~~~-~Tv~~l~ 74 (95)
T 1nq4_A 28 DVEDVAFDALGYDSLALLNTVGRIERDYGVQ-L----GDDAVEKA-TTPRALI 74 (95)
T ss_dssp CCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC-S----CTTHHHHC-CSHHHHH
T ss_pred CCCCCChhhhCCCHHHHHHHHHHHHHHHCCc-c----CHHHHHcC-CCHHHHH
Confidence 3456778899 99999999999999999998 7 77778888 8998888
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=88.92 E-value=0.033 Score=44.38 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=40.1
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+.++.|.++ .|||+++++.++++...|+. + +...+|.+ ||...|+
T Consensus 32 i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~-l----~~~~l~~~-~Ti~~la 78 (91)
T 1dny_A 32 IGILDNFFQIGGHSLKAMAVAAQVHREYQVE-L----PLKVLFAQ-PTIKALA 78 (91)
T ss_dssp CCSSCCTTSSCCSSHHHHHHHHHHHHHCCCC-C----CHHHHHHS-CSHHHHH
T ss_pred CCCCCCHHHcCCCHHHHHHHHHHHHHHHCCC-C----CHHHHHcC-CCHHHHH
Confidence 4457778889 99999999999999999987 6 77788999 9999888
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=88.48 E-value=0.11 Score=47.97 Aligned_cols=46 Identities=13% Similarity=0.019 Sum_probs=40.4
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+.+..|.++ +|||.++|+++|++...|+. + +.+.+|++ ||...|+
T Consensus 150 i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~-l----~~~~l~~~-~Ti~~La 196 (212)
T 2l22_A 150 LRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQ-L----AADAIYTW-PTLKSLA 196 (212)
T ss_dssp CCSSCCGGGGCSSSHHHHHHHHHHHHHTTCC-C----CGGGGGGC-CSHHHHH
T ss_pred CCCCCCHHHhCCCHHHHHHHHHHHHHHHCCC-c----CHHHHHcC-CCHHHHH
Confidence 3456677789 99999999999999999987 6 88889999 9999888
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=85.93 E-value=0.13 Score=39.71 Aligned_cols=44 Identities=9% Similarity=-0.073 Sum_probs=37.4
Q ss_pred CchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 77 ~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+..|.++ +|||..+|+..++....|+. + |...++.+ +|...++
T Consensus 29 ~~~~~~dlG~DSL~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 73 (83)
T 1or5_A 29 LDTPFVDLGYDSLALLETAAVLQQRYGIA-L----TDETVGRL-GTPRELL 73 (83)
T ss_dssp SSSCHHHHSCCHHHHHHHHHHHHTTSCCC-C----SHHHHHHC-CCSHHHH
T ss_pred CCCcHHHhCCCHHHHHHHHHHHHHHHCCc-c----CHHHHhcc-CCHHHHH
Confidence 35568999 99999999999999999988 6 76667777 8888777
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=83.96 E-value=0.16 Score=53.07 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=0.0
Q ss_pred CCCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHHH
Q 012130 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNR 127 (470)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la~ 127 (470)
..+.++.|.++ .|||+++++.++++. .|+. + +...+|.+ ||...|+.
T Consensus 62 ~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~-~----~~~~~~~~-~t~~~la~ 109 (508)
T 4f6l_B 62 DVGVDDDFFELGGNSLEAMLVVSHLKR-FGHH-I----SMQTLYQY-KTVRQIVN 109 (508)
T ss_dssp -------------------------------------------------------
T ss_pred CCCCCCChHHcCchHHHHHHHHHHHHH-cCCC-c----cHHHHhcC-CcHHHHHH
Confidence 35678899999 999999999999986 6766 5 77889999 99999983
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=83.32 E-value=0.41 Score=36.50 Aligned_cols=44 Identities=7% Similarity=-0.127 Sum_probs=36.4
Q ss_pred CchHH-HHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 77 SSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 77 ~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+..| .++ +|||..+|+..++....|+. + |...++.+ +|...++
T Consensus 28 ~~~~l~~dlG~DSl~~~el~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 73 (81)
T 2lol_A 28 TDSRFIEDLKADSLDTVELMMAIEVEYGID-I----PDDEATKI-KTVSDVI 73 (81)
T ss_dssp TTCCHHHHTTCCHHHHHHHHHHHHHHHCCC-C----CGGGGGGS-SSHHHHH
T ss_pred CCCcHHHhcCCcHHHHHHHHHHHHHHHCCC-C----CHHHHHHc-CCHHHHH
Confidence 34555 799 99999999999999999988 6 66666777 8887777
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=82.29 E-value=0.16 Score=38.24 Aligned_cols=44 Identities=7% Similarity=-0.103 Sum_probs=37.0
Q ss_pred CchHH-HHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 77 SSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 77 ~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+..| .++ +|||..+++.+++....|+. + |...+|.+ +|...++
T Consensus 23 ~~~~l~~~lG~DSl~~~~l~~~le~~~gi~-i----~~~~~~~~-~tv~~l~ 68 (77)
T 2ehs_A 23 PEAKFVEDLGADSLDVVELIMAFEEEFGIE-I----PDEDAEKI-QTVGDVI 68 (77)
T ss_dssp TTCBTTTTTCCCHHHHHHHHHHHHHHHTCC-C----CHHHHHTC-CBHHHHH
T ss_pred CccchhhccCCCHHHHHHHHHHHHHHhCCc-c----CHHHHHHc-CCHHHHH
Confidence 45566 888 99999999999999999987 6 66667777 8888887
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=82.21 E-value=0.16 Score=38.61 Aligned_cols=44 Identities=9% Similarity=-0.093 Sum_probs=36.7
Q ss_pred CchHH-HHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 77 SSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 77 ~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+..| .++ +|||..+++..++....|+. + |...+|.+ +|...++
T Consensus 25 ~~~~l~~dlG~DSl~~~el~~~le~~fgi~-i----~~~~l~~~-~Tv~~l~ 70 (78)
T 1l0i_A 25 NNASFVEDLGADSLDTVELVMALEEEFDTE-I----PDEEAEKM-TTVQAAI 70 (78)
T ss_dssp TTCBTTTTSCCCHHHHHHHHHHHHHHHTCC-C----CHHHHTTC-CBHHHHH
T ss_pred CCcchhhhcCCCHHHHHHHHHHHHHHhCCC-C----CHHHHHHc-CCHHHHH
Confidence 35556 689 99999999999999999988 6 76667777 8888887
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=80.45 E-value=0.24 Score=37.99 Aligned_cols=44 Identities=7% Similarity=-0.101 Sum_probs=36.4
Q ss_pred CchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 77 ~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+..|.++ +|||..+++..++....|+. + |...++.+ +|...++
T Consensus 27 ~~~~l~dlG~DSl~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 71 (82)
T 2ava_A 27 ADSEFSKLGADSLDTVEIVMNLEEEFGIN-V----DEDKAQDI-STIQQAA 71 (82)
T ss_dssp SSCCSCCCTTCCSCHHHHHHHHHHHTTCC-C----CGGGSSSC-CSHHHHH
T ss_pred CCCchhhcCCCHHHHHHHHHHHHHHHCCc-c----CHHHHHhC-CCHHHHH
Confidence 35555688 99999999999999999988 6 66666777 8888887
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=80.29 E-value=0.36 Score=36.82 Aligned_cols=45 Identities=9% Similarity=-0.131 Sum_probs=36.5
Q ss_pred CCchHH-HHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 76 GSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 76 ~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
..+..| .++ +|||..+|+..++....|+. + |...++.+ +|...++
T Consensus 28 ~~~~~l~~dlG~DSl~~vel~~~le~~fgi~-i----~~~~~~~~-~Tv~~l~ 74 (81)
T 1f80_D 28 KLEASFKEDLGADXLDVVELVMELEDEFDME-I----SDEDAEKI-ATVGDAV 74 (81)
T ss_dssp CTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC-C----CHHHHHHC-CBHHHHH
T ss_pred CCccchHHHcCCcHHHHHHHHHHHHHHhCCc-c----CHHHHHHC-CCHHHHH
Confidence 345666 899 99999999999999999988 6 66666667 7777776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 470 | ||||
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 2e-71 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 3e-68 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 8e-61 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 1e-57 | |
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 4e-53 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 7e-53 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 4e-36 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 4e-30 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 2e-17 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 2e-15 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 6e-06 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 7e-06 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 9e-06 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 2e-05 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 6e-05 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 6e-04 |
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 224 bits (572), Expect = 2e-71
Identities = 107/252 (42%), Positives = 158/252 (62%), Gaps = 5/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLD 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+L +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 62 RKEL-RRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 AL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVMGEGAGVL+
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGA 415
LE EHAKKRGA
Sbjct: 238 LEAYEHAKKRGA 249
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 216 bits (551), Expect = 3e-68
Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 4/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ + +
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ K ++MD F+ Y + AG +A+ D G+ E + ++ G IGSG+GG+ + +
Sbjct: 62 SRKEQRKMDAFIQYGIVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHT 118
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+L +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 119 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAY 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+L+
Sbjct: 179 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 238
Query: 404 LEELEHAKKRGA 415
LEE EHAKKRGA
Sbjct: 239 LEEYEHAKKRGA 250
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 197 bits (500), Expect = 8e-61
Identities = 107/252 (42%), Positives = 156/252 (61%), Gaps = 4/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F ++
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFL 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +KRMD+F + + A ++A+ D + +NEL+ + GVLIG+G+GG+KV D
Sbjct: 62 DRKEAKRMDRFCHFAVCASQQAINDAKLV---INELNADEIGVLIGTGIGGLKVLEDQQT 118
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L + +PF +P NM S + A++LG GPN TACA + I +A +
Sbjct: 119 ILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQN 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+G+L+
Sbjct: 179 GYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILI 238
Query: 404 LEELEHAKKRGA 415
LEELE A RGA
Sbjct: 239 LEELESALARGA 250
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 188 bits (479), Expect = 1e-57
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 5/256 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 5 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 64
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + L++ + GV++ SG+GG+K
Sbjct: 65 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVIVASGIGGIKEIE 121
Query: 281 DAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D + L K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 122 DQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFR 181
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVMGEG+
Sbjct: 182 SIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVMGEGS 240
Query: 400 GVLLLEELEHAKKRGA 415
G+L+LE LEHA+KRGA
Sbjct: 241 GMLVLESLEHAEKRGA 256
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 177 bits (450), Expect = 4e-53
Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 19/271 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--------------CTSFPTK 210
+RVVVTG+G+V+PLG + + L++G GI + D +K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 211 IAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
+AA + S G L SK + F+ Y + A +AL D E +++ +
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 268 LIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
G G V + ++++PF +P NM S ++M G+ GPN++ TAC
Sbjct: 121 GGGIGSICDIVEAAQLI-CEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTAC 179
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPW 386
AT I +A I G+A+VM+ GG+++++ + + GF RALS + N P +ASRP+
Sbjct: 180 ATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPF 239
Query: 387 DINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417
D +RDGFV+GEG+GV++LEE EHAK+RGAKI
Sbjct: 240 DCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 176 bits (447), Expect = 7e-53
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 5/255 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K +T
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLID 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ D + L+ A + + G++ GSG G + +
Sbjct: 62 RKVVRFMSDASIYAFLSM---EQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 285 ALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
A+R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
G+ +++ GG + + ++ N+ P KASR +D +RDGFV+ G G++
Sbjct: 179 LGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMV 238
Query: 403 LLEELEHAKKRGAKI 417
++EELEHA RGA I
Sbjct: 239 VVEELEHALARGAHI 253
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 130 bits (328), Expect = 4e-36
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
P+ RMD+ + + ++A A G+ D ++ + ++ Y +
Sbjct: 61 GPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLS 120
Query: 285 ----ALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+ ++ + ++ A +A +G GP +ST C + + NA
Sbjct: 121 DSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRA 180
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376
I G A+VM G +D + PI + F A RA + RN
Sbjct: 181 IEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 114 bits (285), Expect = 4e-30
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 3/207 (1%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAP 226
V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F +
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPG 61
Query: 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL 286
+L + D LTA AL D + + + D + G + +
Sbjct: 62 RLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVT--ANACGGFDFTHREFRKLW 119
Query: 287 RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA 346
K ++ + + + +++ G GP+ ++ A + +A I RG
Sbjct: 120 SEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-T 178
Query: 347 NVMLCGGSDAAVIPIGLGGFVACRALS 373
+++ GG D+A+ P G +A +S
Sbjct: 179 PLVVSGGVDSALDPWGWVSQIASGRIS 205
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 78.3 bits (192), Expect = 2e-17
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
+DP ASRP+D RDGFV+ EGA + +LE+ + A RGA+I+AE G + +AYHMT
Sbjct: 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 60
Query: 437 HPD 439
D
Sbjct: 61 KAD 63
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 72.3 bits (176), Expect = 2e-15
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPH 437
DP +A P+D G+V GEG +L+LE+ A+ RG G ++
Sbjct: 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGR 60
Query: 438 P 438
P
Sbjct: 61 P 61
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 44.0 bits (103), Expect = 6e-06
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
KIY E G + T DAYH+T P PDG+ A
Sbjct: 1 KIYGEMVGYAMTCDAYHITAPVPDGRGA 28
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 44.0 bits (103), Expect = 7e-06
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGKSA 443
I AE G T DAYHMT PHP+G+ A
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGA 28
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 43.6 bits (102), Expect = 9e-06
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
+IYAE G ++DA+H+TEPHP+GK A
Sbjct: 1 RIYAELVGFGRSADAHHITEPHPEGKGA 28
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSA 443
KIYAE G +SDAYHMT P +G A
Sbjct: 1 KIYAELVGFGMSSDAYHMTSPPENGAGA 28
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 41.3 bits (96), Expect = 6e-05
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGKSA 443
YAE G + DA+H+T+P DGK A
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDGKGA 26
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 418 YAEFRGGSFTSDAYHMTEPHPDG 440
YAE G TSD M P +G
Sbjct: 1 YAEIVGYGATSDGADMVAPSGEG 23
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.83 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 99.79 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.02 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 98.99 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.95 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 98.9 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 98.85 | |
| d2gfva2 | 161 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 98.85 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 98.83 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.82 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 98.81 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 98.79 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 98.77 | |
| d2vbaa2 | 151 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 98.76 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 98.75 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.75 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.73 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 98.65 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 98.34 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 96.86 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 96.81 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 96.67 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 95.14 | |
| d2ix4a2 | 161 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 93.64 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 93.42 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 92.03 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 90.92 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 87.48 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 87.0 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 82.53 |
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-54 Score=418.24 Aligned_cols=248 Identities=44% Similarity=0.758 Sum_probs=234.5
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
+||||||||+++|+|.++++||++|.+|+++|+++++|+...++..+++.|++|+...++++++.+.|||++++++.+++
T Consensus 2 rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 81 (250)
T d2gfva1 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGV 81 (250)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcceee
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV 323 (470)
+||+|||+..+ ..+..++||++|++.++....+..+..+.. ....++|..++..+.|.++++|++.||++||+++|
T Consensus 82 ~Al~dAg~~~~---~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv 158 (250)
T d2gfva1 82 QAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI 158 (250)
T ss_dssp HHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCCSCEECC
T ss_pred HHHHhcCCCcc---ccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999875 677889999999999988877776666554 56678999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeEe
Q 012130 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (470)
Q Consensus 324 ~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagalv 403 (470)
+++|+||+.||++|+++|++|+||+|||||+|..++|..+.+|..+++||..+++|+++|||||+++|||++|||+|+||
T Consensus 159 ~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGaa~lV 238 (250)
T d2gfva1 159 ATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 238 (250)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEEEEEE
T ss_pred ccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCCCCEeeeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred eccchhHHhcCC
Q 012130 404 LEELEHAKKRGA 415 (470)
Q Consensus 404 Le~l~~A~~~G~ 415 (470)
||++++|++||+
T Consensus 239 LE~~~~A~~rGA 250 (250)
T d2gfva1 239 LEEYEHAKKRGA 250 (250)
T ss_dssp EEEHHHHHHHTC
T ss_pred ECcHHHHHHCcC
Confidence 999999999985
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.6e-54 Score=416.05 Aligned_cols=248 Identities=43% Similarity=0.783 Sum_probs=230.5
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|+||||||||+++|+|.++++||++|.+|+++|+++++|+...++..+.+.+ ++++..++++++.+.|||+++++++++
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~aa 79 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAA 79 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccccccCCccccccc-cccccccccHHHHhhCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988888777765 456666689999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||+.++ ++++.|||||+|++.++............ .+...++|+.+...+.+.++++|+++||++||+++
T Consensus 80 ~~Al~dAGl~~~---~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~Gp~~t 156 (249)
T d1j3na1 80 QLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSST 156 (249)
T ss_dssp HHHHHHHTCCGG---GSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCC
T ss_pred HHHHHHcCCChh---HcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCCCCccc
Confidence 999999999976 67788999999999999888777666555 36677899999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|+++|+||++||++|+++|++|+||+|||||+|..++|..+.+|.++++||+.++.|+++|||||.++|||++|||+++|
T Consensus 157 v~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~dG~v~gEGa~~l 236 (249)
T d1j3na1 157 VVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVL 236 (249)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEE
T ss_pred cccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCCCEeeEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred eeccchhHHhcCC
Q 012130 403 LLEELEHAKKRGA 415 (470)
Q Consensus 403 vLe~l~~A~~~G~ 415 (470)
|||++++|++||+
T Consensus 237 vLe~~~~A~~rGA 249 (249)
T d1j3na1 237 VLEAYEHAKKRGA 249 (249)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEccHHHHHHCcC
Confidence 9999999999995
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=1.6e-52 Score=404.12 Aligned_cols=249 Identities=43% Similarity=0.759 Sum_probs=234.0
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
++||||||||+++|+|.++++||++|.+|+++|+++++|+...++..+.+.++.++..+.+++++.+.|||+++++++++
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999888877799999999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCccee
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~t 322 (470)
++||+|||+.++ .+..++++|++|++.+....+...+..+.+ +....+++.+.....+..++++++.||++||+++
T Consensus 81 ~~Al~~Agl~~~---~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (250)
T d1e5ma1 81 QQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNC 157 (250)
T ss_dssp HHHHHHHTCCCC---TTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCEEC
T ss_pred HHHHHHcCCChH---hhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCCCCCcc
Confidence 999999999876 677889999999999888887777766654 5567788888889999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcceecceeEeE
Q 012130 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (470)
Q Consensus 323 V~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v~GEGagal 402 (470)
|++||+||+.||++|+++|++|+||++||||++..++|..+.+|.++++||..+++|+++|||||+++|||++|||+++|
T Consensus 158 v~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~dG~~~gEGa~~~ 237 (250)
T d1e5ma1 158 TVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 237 (250)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEEEE
T ss_pred ccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCCCCEeeEeeEEEE
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred eeccchhHHhcCC
Q 012130 403 LLEELEHAKKRGA 415 (470)
Q Consensus 403 vLe~l~~A~~~G~ 415 (470)
|||++++|++||+
T Consensus 238 vLe~l~~A~~rGA 250 (250)
T d1e5ma1 238 ILEELESALARGA 250 (250)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEeeHHHHHHCcC
Confidence 9999999999995
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-49 Score=378.95 Aligned_cols=250 Identities=35% Similarity=0.540 Sum_probs=219.5
Q ss_pred CCcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHH
Q 012130 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (470)
Q Consensus 164 ~~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa 243 (470)
|+||||||||+++|+|.++++||++|++|+++|+++++|+...++....+.++.+ ...++..++.+.+++..++.+.++
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLD-TTGLIDRKVVRFMSDASIYAFLSM 79 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCC-CTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccccccCccccccccccc-ccccccchhhccchhhhhhhhHHH
Confidence 5799999999999999999999999999999999999888888887777776544 444567888999999999999999
Q ss_pred HHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH--hhhhcCCCccccccchhhHHHHHHHHhCCCCcce
Q 012130 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (470)
Q Consensus 244 ~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~ 321 (470)
.+|++++|+..+. .....++||++|+..++..........+. ++...++|+.++....+.++++|+++||++||++
T Consensus 80 ~~a~~~~~l~~~~--~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~Gp~~ 157 (253)
T d2vbaa1 80 EQAIADAGLSPEA--YQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157 (253)
T ss_dssp HHHHHHHTCCHHH--HTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCEE
T ss_pred HHHHHHhhccchh--ccCCCCEEEEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCccccee
Confidence 9999999998652 34567999999999988776655444433 2445678888999999999999999999999999
Q ss_pred eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcCCCCCCCcceecceeE
Q 012130 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEGAG 400 (470)
Q Consensus 322 tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rpFd~~adG~v~GEGag 400 (470)
+|+++|+||++||++|+++|++|+||++||||+|.+. +..+..|.++++++.. +++|+++|||||+++|||++|||++
T Consensus 158 ~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~~~-~~~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~gEGa~ 236 (253)
T d2vbaa1 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELC-WEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236 (253)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCC-HHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eeeccchhHHHHHHHHHHhcchhccceeeecchhhhh-cchhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeeeeEEE
Confidence 9999999999999999999999999999999999854 4457789999988854 6679999999999999999999999
Q ss_pred eEeeccchhHHhcCCee
Q 012130 401 VLLLEELEHAKKRGAKI 417 (470)
Q Consensus 401 alvLe~l~~A~~~G~~I 417 (470)
+||||++++|++||++|
T Consensus 237 ~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 237 MVVVEELEHALARGAHI 253 (253)
T ss_dssp EEEEEEHHHHHHTTCCC
T ss_pred EEEEccHHHHHHccCcC
Confidence 99999999999999987
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=1.2e-45 Score=358.40 Aligned_cols=251 Identities=39% Similarity=0.659 Sum_probs=206.5
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCC--CCC------------CccccccccCCC-CCCC--CCcc
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--TSF------------PTKIAAEIKSFS-TDGW--VAPK 227 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~--~~~------------~~~~~g~i~~fd-~~~f--i~p~ 227 (470)
+||||||||+++|+|.++++||++|.+|+++|++++.+++ ..| +.++.+.++.+. +..| ...+
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHhh
Confidence 5899999999999999999999999999999999965433 332 233444454332 2222 2233
Q ss_pred ccccCCHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHH-hhhhcCCCccccccchhhH
Q 012130 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMG 306 (470)
Q Consensus 228 ea~~mdp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~ 306 (470)
....+++.....+.+..+|++++++... +.....++++.++................. ......+++.++..+.+++
T Consensus 81 ~~~~~~~~~~~a~~a~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (270)
T d2ix4a1 81 NSKAVANFIGYAVCAADEALRDAEWLPT--EEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMA 158 (270)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHTTCCCC--SHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhccc--cccccccceEEeeccccccccchhhcchhhhccccccCcccCcccccchh
Confidence 4567788888999999999999997543 133445677777776655554444333333 3556788999999999999
Q ss_pred HHHHHHHhCCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCC-CCCCCCCCcC
Q 012130 307 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRP 385 (470)
Q Consensus 307 a~~is~~~gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~-~~~~~~~~rp 385 (470)
+++|+++||++||+++|+++|+||+.||++|+++|++|+||+|||||++..++|..+..|.++++||+. +++|+++|||
T Consensus 159 a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~rP 238 (270)
T d2ix4a1 159 SGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238 (270)
T ss_dssp HHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCT
T ss_pred HHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 5679999999
Q ss_pred CCCCCCcceecceeEeEeeccchhHHhcCCee
Q 012130 386 WDINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417 (470)
Q Consensus 386 Fd~~adG~v~GEGagalvLe~l~~A~~~G~~I 417 (470)
||+++|||++|||+|++|||++++|++||++|
T Consensus 239 FD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp TBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 99999999999999999999999999999987
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=5e-41 Score=315.07 Aligned_cols=205 Identities=23% Similarity=0.367 Sum_probs=193.4
Q ss_pred cEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHHH
Q 012130 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (470)
Q Consensus 166 ~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~e 245 (470)
.|||||||+++|+|.|+++||++|.+|+++|+++++|+.+.++..+.+.+++|++..++++++.+.|||++++++.+++|
T Consensus 1 ~VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (208)
T d1tqyb1 1 SVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADW 80 (208)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHHH
T ss_pred CEEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhccccccccccccccc
Confidence 38999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHh-hhhcCCCccccccchhhHHHHHHHHhCCCCcceeec
Q 012130 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324 (470)
Q Consensus 246 ALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~a~~is~~~gl~Gps~tV~ 324 (470)
||+|||++++ +....++|+++|++.++....++.+..+.. ..+..+|+.++..+.|+.+++|+++||++||+++|+
T Consensus 81 Al~~Ag~~~~---~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv~ 157 (208)
T d1tqyb1 81 ALQDAKADPE---SLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALV 157 (208)
T ss_dssp HHHHTTCCGG---GSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCEEEE
T ss_pred cchhhhcccc---cccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhcccccceeeecc
Confidence 9999999876 677889999999999999888887777654 556788999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccC
Q 012130 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374 (470)
Q Consensus 325 tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~ 374 (470)
+||+||++||++|+++|++| ||+|||||+|..++|..+.+|+++++||+
T Consensus 158 tACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lSt 206 (208)
T d1tqyb1 158 AEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206 (208)
T ss_dssp CGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC
T ss_pred ccccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCCC
Confidence 99999999999999999999 99999999999999999999999999984
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.5e-39 Score=306.50 Aligned_cols=209 Identities=28% Similarity=0.419 Sum_probs=186.8
Q ss_pred CcEEEEeecccCCCCCCHHHHHHHHHcCCCcceeCCCCCCCCCCccccccccCCCCCCCCCccccccCCHHHHHHHHHHH
Q 012130 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (470)
Q Consensus 165 ~~VaItGmg~~~P~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~fd~~~fi~p~ea~~mdp~~rl~L~aa~ 244 (470)
+||||||||+++|+|+++++||++|.+|+++|++++.|+++.+...+...++.+...+++++++.+.||+.+++++.++.
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~ 80 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAR 80 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHHH
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHHH
Confidence 58999999999999999999999999999999999999988877766665544333445999999999999999999999
Q ss_pred HHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhh-------hhcCCCccccccchhhHHHHHHHHhCCC
Q 012130 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-------YKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (470)
Q Consensus 245 eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~~~~~a~~is~~~gl~ 317 (470)
|||+|||++++ .+...++|+++|.+.++.....+.+..+... .....++.++..+.+.++++++++||++
T Consensus 81 ~Al~dAg~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~ 157 (216)
T d1tqya1 81 EAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE 157 (216)
T ss_dssp HHHHHHTCCTT---TCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHhcCCcc---ccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCcc
Confidence 99999999876 6778899999999999998888887776643 2345666777788899999999999999
Q ss_pred CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCC
Q 012130 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376 (470)
Q Consensus 318 Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~ 376 (470)
||+++|++||+||++||++|+++|++|+||+|||||+|..++|..+.+|+++++||++|
T Consensus 158 Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~~n 216 (216)
T d1tqya1 158 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216 (216)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCC
T ss_pred ccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999643
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.83 E-value=1.5e-21 Score=181.70 Aligned_cols=88 Identities=39% Similarity=0.621 Sum_probs=78.7
Q ss_pred CCCCCCCcCCCCCCCcceecceeEeEeeccchhHHhcCCeeeEEEEEEeeccCCCCCCCcCcCchhHHHHH-hh------
Q 012130 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLR-LN------ 449 (470)
Q Consensus 377 ~~~~~~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~-~~------ 449 (470)
++|+++|||||+++|||++|||++++|||++++|++||++||++|.|+++++|+++.+.+.|++.++.... .+
T Consensus 1 ~~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a~i 80 (205)
T d1tqya2 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 80 (205)
T ss_dssp SCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhhcC
Confidence 46999999999999999999999999999999999999999999999999999999988888877655322 12
Q ss_pred --ccccEEEEeeeccee
Q 012130 450 --FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 --~~i~~veahGtGT~l 464 (470)
.+|+|||+|||||.+
T Consensus 81 ~~~~i~~ie~hgtGt~~ 97 (205)
T d1tqya2 81 DATDIDYINAHGSGTRQ 97 (205)
T ss_dssp CGGGCCEEECCCCCCHH
T ss_pred Cccceeeeecccccccc
Confidence 299999999999976
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.79 E-value=2.5e-20 Score=171.88 Aligned_cols=86 Identities=30% Similarity=0.400 Sum_probs=75.7
Q ss_pred CCCCCCcCCCCCCCcceecceeEeEeeccchhHHhcCC-eeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh-------
Q 012130 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN------- 449 (470)
Q Consensus 378 ~~~~~~rpFd~~adG~v~GEGagalvLe~l~~A~~~G~-~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~------- 449 (470)
+|+++|||||+++|||++|||++++|||++++|++||+ +||++|.|+++++|+.+.+ +++.++...+.+++
T Consensus 1 ~p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~-~~~~g~~~~i~~aL~~a~i~~ 79 (194)
T d1tqyb2 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS-GRPAGLERAIRLALNDAGTGP 79 (194)
T ss_dssp CGGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTC-CCCCSHHHHHHHHHHHHTCCG
T ss_pred CCCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeecccccccccccc-cchhhhhhhhhhhcccccccc
Confidence 48899999999999999999999999999999999998 6999999999999998764 56777766554433
Q ss_pred ccccEEEEeeeccee
Q 012130 450 FSVQMKSLNGFGKFY 464 (470)
Q Consensus 450 ~~i~~veahGtGT~l 464 (470)
.+|+|||+|||||.+
T Consensus 80 ~di~~v~ahgtGt~~ 94 (194)
T d1tqyb2 80 EDVDVVFADGAGVPE 94 (194)
T ss_dssp GGCCEEECCCCCSHH
T ss_pred cceeeeeccccCccc
Confidence 299999999999986
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=9.4e-10 Score=98.18 Aligned_cols=119 Identities=17% Similarity=0.270 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|..+++.+||+++|++++.+ + .|++.+..++ ......+..|...|
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~~dI---d----lli~~s~t~~-------------------------~~~p~~a~~v~~~L 96 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGALEGV---D----AVIVATNTPD-------------------------ALFPDTAALVQARF 96 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTTE---E----EEEEECSSCS-------------------------EEESCHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhcCcccccc---e----EEEEeccccc-------------------------ccccchHHHHHHHh
Confidence 45789999999999999987622 2 3444444221 12233477888899
Q ss_pred CCCCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcce
Q 012130 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (470)
Q Consensus 315 gl~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~v 394 (470)
|.+.+++.|..+|++.+.||+.|..+|++|..+.+|+.++|.. +.. +. |+.....++
T Consensus 97 g~~~~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~-S~~----------~~------------~~d~~~~~l 153 (172)
T d1ub7a1 97 GLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL-SKI----------ID------------WNDRATAVL 153 (172)
T ss_dssp TCCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGT----------SC------------TTCHHHHTT
T ss_pred ccCccceeehhccccHHHHHHHHhhhhhcCCcceeEEeccccc-ccc----------cC------------CCCcCeEEE
Confidence 9999999999999999999999999999999999999999972 111 11 122234667
Q ss_pred ecceeEeEeeccch
Q 012130 395 MGEGAGVLLLEELE 408 (470)
Q Consensus 395 ~GEGagalvLe~l~ 408 (470)
+|+|++++||++.+
T Consensus 154 fGDgAaA~ll~~~~ 167 (172)
T d1ub7a1 154 FGDGGGAAVVGKVR 167 (172)
T ss_dssp BCCEEEEEEEECCC
T ss_pred ecceeEEEEEEEcC
Confidence 89999999998754
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.95 E-value=2.5e-09 Score=101.73 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHH-hCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 236 ~rl~L~aa~eALe-dAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
..|+-++..++|+ ++|++++.++ .|++|...... .....++..++...
T Consensus 31 ~dL~~~~i~~~l~r~agi~~~~Id-------~vi~G~v~~~~------------------------~~g~n~aR~~al~a 79 (262)
T d1wdkc1 31 EDMSAHLISKVLERNSKVDPGEVE-------DVIWGCVNQTL------------------------EQGWNIARMASLMT 79 (262)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGEE-------EEEEECSSBSB------------------------TTTTTHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHee-------EEEEEeecccc------------------------cccccchhhhHhhh
Confidence 4578889999999 5999987443 58999764211 01112455666666
Q ss_pred CCC--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 315 gl~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
|+- =|.++|+..|+||+.||++|++.|+.|+.|++|+||+|.+..
T Consensus 80 g~p~~vp~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~ 126 (262)
T d1wdkc1 80 QIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGH 126 (262)
T ss_dssp SSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTT
T ss_pred hcccccchhhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccc
Confidence 663 489999999999999999999999999999999999997654
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.3e-09 Score=95.69 Aligned_cols=119 Identities=21% Similarity=0.340 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++.+||+++|++++ +++ -|++++..+++ .....+..|...|
T Consensus 51 ~~~la~~Aa~~al~~a~~~~~---~Id----~li~~s~~~~~-------------------------~~P~~a~~v~~~L 98 (174)
T d1hnja1 51 VSTMGFEAATRAIEMAGIEKD---QIG----LIVVATTSATH-------------------------AFPSAACQIQSML 98 (174)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCSC-------------------------SSSCHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhcccccc---ccc----EEEEecCCccc-------------------------cccchhhhhhhcc
Confidence 456999999999999999986 333 46666653221 1123478899999
Q ss_pred CCCC-cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 315 gl~G-ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
|++. +++.|..+|++++.||+.|..+|++|.++.+|+.++|.. ++. +. + +.....+
T Consensus 99 gl~~~~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~-S~~----------~~-----~-------~d~~~~~ 155 (174)
T d1hnja1 99 GIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL-ART----------CD-----P-------TDRGTII 155 (174)
T ss_dssp TCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH-HHH----------SC-----T-------TCHHHHT
T ss_pred CCCchhhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehh-hcc----------cC-----C-------CCCCeEE
Confidence 9985 788999999999999999999999999999999999972 211 11 1 1112356
Q ss_pred eecceeEeEeeccch
Q 012130 394 VMGEGAGVLLLEELE 408 (470)
Q Consensus 394 v~GEGagalvLe~l~ 408 (470)
++|+|+++++|++.+
T Consensus 156 lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 156 IFGDGAGAAVLAASE 170 (174)
T ss_dssp TBCCEEEEEEEEEES
T ss_pred EeceeeEEEEEEeCC
Confidence 789999999999744
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=98.85 E-value=6.8e-09 Score=93.20 Aligned_cols=118 Identities=21% Similarity=0.300 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|..+++.+||+++|++++ +++ .|++++..+++ . ....+..|...+
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~~---dId----~li~~s~~~~~---------------------~----~p~~a~~v~~~l 105 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDPA---EID----LVVVSTMTNFV---------------------H----TPPLSVAIAHEL 105 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG---GCC----EEEEECSCCCC---------------------C----SSCHHHHHHHHH
T ss_pred HHHHhHHHHHhhhhhccCChh---HCe----EEEEeccCCcc---------------------c----cccHHHHHHHhh
Confidence 456999999999999999986 333 45666553211 1 122467788888
Q ss_pred CCC-CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCCCcc
Q 012130 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (470)
Q Consensus 315 gl~-Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~adG~ 393 (470)
+.. -+++.|..+|++++.||+.|..+|++|....+|+.++|.. ++. +. ++.....+
T Consensus 106 ~~~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~-s~~----------~~------------~~d~~~~~ 162 (181)
T d1mzja1 106 GADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM-TDV----------ID------------LADRSLSF 162 (181)
T ss_dssp TCTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG-GGG----------SC------------SSCTTTTT
T ss_pred cCCCccceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccc-ccc----------CC------------CCCcceEE
Confidence 885 4789999999999999999999999999999999999962 211 11 11223467
Q ss_pred eecceeEeEeeccc
Q 012130 394 VMGEGAGVLLLEEL 407 (470)
Q Consensus 394 v~GEGagalvLe~l 407 (470)
++|+||+++||++.
T Consensus 163 lfGDGAaA~ll~~~ 176 (181)
T d1mzja1 163 LFGDGAGAAVVGPS 176 (181)
T ss_dssp TBCEEEEEEEEEEE
T ss_pred EeeeeeEEEEEEeC
Confidence 89999999999864
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.9e-10 Score=98.46 Aligned_cols=49 Identities=35% Similarity=0.432 Sum_probs=42.0
Q ss_pred eeeEEEEEEeeccCCCCCCCcCcCchhHHHHHh-h--------ccccEEEEeeeccee
Q 012130 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRL-N--------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 416 ~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~-~--------~~i~~veahGtGT~l 464 (470)
+|||+|+|+++|+||++++.|+|+++++..... + .+|+|||+|||||.+
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~a~i~p~~i~~ie~HgtGT~~ 58 (161)
T d2gfva2 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPA 58 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred CEEEEEeeEEEeCCCCCCCCCCCCHHHHHHHHHHhHhhcccCcceEEEEEeecccCcc
Confidence 699999999999999999999999887664322 2 299999999999986
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=98.83 E-value=7.4e-10 Score=97.60 Aligned_cols=49 Identities=37% Similarity=0.466 Sum_probs=42.6
Q ss_pred eeeEEEEEEeeccCCCCCCCcCcCchhHHHHHhh---------ccccEEEEeeeccee
Q 012130 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLN---------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 416 ~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~---------~~i~~veahGtGT~l 464 (470)
+|||+|+|+++|+||++++.|+|+++++...... .+|+|||+|||||.+
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~agi~p~~I~~ie~HgtGT~~ 58 (159)
T d1j3na2 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPV 58 (159)
T ss_dssp CCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred CEEEEEeEEEEeCCCCCCCCCCcCHHHHHHHhhccHhhcCCCHHHcCeEeccccCCcc
Confidence 5999999999999999999999999887754322 299999999999975
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=1.5e-08 Score=96.52 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHh----CCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHH
Q 012130 237 LYLLTAGKKALAD----GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (470)
Q Consensus 237 rl~L~aa~eALed----AG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~ 312 (470)
.|+..+..++|+. +|++++.+ + .|++|+.... .....++..++.
T Consensus 37 ~L~~~~i~~~l~r~~~~~~idp~~I---d----~vi~G~v~~~-------------------------g~~~~~aR~~al 84 (269)
T d1afwa1 37 YLLYNFLNEFIGRFPEPLRADLNLI---E----EVACGNVLNV-------------------------GAGATEHRAACL 84 (269)
T ss_dssp HHHHHHHHHHHHTSCHHHHTCGGGC---C----CEEEECSSSB-------------------------GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCChhhc---C----EEEecccccc-------------------------ccccccchhhhh
Confidence 4667778888875 46887633 3 4889976321 112234666777
Q ss_pred HhCC--CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 313 DLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 313 ~~gl--~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
.-|+ .-|.++|+..|+||+.||+.|++.|+.|+.|++|+||+|.+..
T Consensus 85 ~aglp~~vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS~ 133 (269)
T d1afwa1 85 ASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTN 133 (269)
T ss_dssp HTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHH
T ss_pred hccccccccchhccccchHHHHHHHHHHHHHhhccccceeeeecccccc
Confidence 7777 5699999999999999999999999999999999999998653
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=98.81 E-value=9.5e-10 Score=97.10 Aligned_cols=49 Identities=37% Similarity=0.475 Sum_probs=41.6
Q ss_pred eeeEEEEEEeeccCCCCCCCcCcCchhHHHHH--hh-------ccccEEEEeeeccee
Q 012130 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLR--LN-------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 416 ~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~--~~-------~~i~~veahGtGT~l 464 (470)
+|||+|+|+++++||+|++.|+|+++++.... ++ -+|+|||+|||||.+
T Consensus 1 rIya~i~G~~~~~Dg~~~~~~~p~g~~~~~~i~~Al~~a~i~~~~i~~v~~HgtGT~~ 58 (161)
T d1e5ma2 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPA 58 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred CEEEEEeeEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHcCCChhhcceEEEeccCCcc
Confidence 69999999999999999999999888776432 22 299999999999975
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.79 E-value=1.2e-09 Score=96.21 Aligned_cols=49 Identities=39% Similarity=0.501 Sum_probs=41.9
Q ss_pred eeeEEEEEEeeccCCCCCCCcCcCchhHHHHH-hh--------ccccEEEEeeeccee
Q 012130 416 KIYAEFRGGSFTSDAYHMTEPHPDGKSAMSLR-LN--------FSVQMKSLNGFGKFY 464 (470)
Q Consensus 416 ~I~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~-~~--------~~i~~veahGtGT~l 464 (470)
+|||+|+|+++++||+|++.|+|+|+++.... .+ .+|+|||+|||||.+
T Consensus 1 tIyaei~G~~~~~Dg~~~~~p~p~g~~~~~~~~~al~~a~l~p~~i~~v~aHgtgT~~ 58 (158)
T d1ox0a2 1 TILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPA 58 (158)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHH
T ss_pred CEEEEEEEEEEcCCCCCCcCCCCCHHHHHHHHHHhhccccccceeeeEEeeecccccc
Confidence 59999999999999999999999998865322 22 289999999999976
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.77 E-value=1.2e-08 Score=101.58 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=112.4
Q ss_pred CCCcEEEEeecccCCCC-CCHHHHHHHHHcCCCcceeCCC----CCCCCCCccccccccCCCCC--CC--CCccccccC-
Q 012130 163 KQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIET----FDCTSFPTKIAAEIKSFSTD--GW--VAPKLSKRM- 232 (470)
Q Consensus 163 ~~~~VaItGmg~~~P~g-~~~~~~w~~L~~G~s~i~~~~~----~~~~~~~~~~~g~i~~fd~~--~f--i~p~ea~~m- 232 (470)
+....+|+|+|..+|.- .+-+++++.+.+-...-...++ +...+...++.. .+..|.. .+ .++...+++
T Consensus 8 p~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~-~~~~~~~~~~~~~~~~~~~~r~~ 86 (372)
T d1teda_ 8 PTTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMA-VDPLDAKFDVFRREPATIRDRMH 86 (372)
T ss_dssp CCCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECS-SCTTSTTHHHHTTCSSCHHHHHH
T ss_pred CCceEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCccccee-ccccccchhhhhhcCCCHHHHHH
Confidence 34466899999999987 6788888887542111000000 011122221111 0111100 00 111111111
Q ss_pred ---CHHHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEE-eccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHH
Q 012130 233 ---DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI-GSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (470)
Q Consensus 233 ---dp~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~v-G~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~ 308 (470)
.....|+.+|+.+||+++|++++. |.++| +++. ++ ..| ..+.
T Consensus 87 ~~~e~~~~la~~Aa~~aL~~ag~~~~d--------Id~lI~~t~t-~~--------------------~~P-----~~a~ 132 (372)
T d1teda_ 87 LFYEHAVPLAVDVSKRALAGLPYRAAE--------IGLLVLATST-GF--------------------IAP-----GVDV 132 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGG--------EEEEEEEESS-CC--------------------CSS-----CHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCHHH--------CCEEEEeccC-CC--------------------CCc-----hHHH
Confidence 123469999999999999999863 33444 4432 21 122 3478
Q ss_pred HHHHHhCCCCcc--eeec-CCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcC
Q 012130 309 MLAMDLGWMGPN--YSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRP 385 (470)
Q Consensus 309 ~is~~~gl~Gps--~tV~-tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rp 385 (470)
.|...+|++... +.+. .||++++.||..|..+|++|..+.+||.++|.+.. . +.. .+ -
T Consensus 133 ~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~-~----------~~~----~d----~ 193 (372)
T d1teda_ 133 AIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSV-N----------AVF----AD----D 193 (372)
T ss_dssp HHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG-G----------CCC----CS----S
T ss_pred HHHhhhccCCceeEeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhcc-c----------ccC----CC----c
Confidence 899999998643 3343 58999999999999999999999999999996221 0 000 00 0
Q ss_pred CCCCCCcceecceeEeEeeccchh
Q 012130 386 WDINRDGFVMGEGAGVLLLEELEH 409 (470)
Q Consensus 386 Fd~~adG~v~GEGagalvLe~l~~ 409 (470)
++..-..+++|+|++++||++.+.
T Consensus 194 ~~~~~~~~lfGDGAaA~ll~~~~~ 217 (372)
T d1teda_ 194 INDVVIHSLFGDGCAALVIGASQV 217 (372)
T ss_dssp HHHHHHHHHBCEEEEEEEEEEECT
T ss_pred chhhhhhhhhcccceeEEeccCCc
Confidence 000113457899999999987544
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.5e-09 Score=94.70 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=42.1
Q ss_pred eEEEEEEeeccCCCCCCCcCcCchhHHHHHhhc----cccEEEEeeeccee
Q 012130 418 YAEFRGGSFTSDAYHMTEPHPDGKSAMSLRLNF----SVQMKSLNGFGKFY 464 (470)
Q Consensus 418 ~a~I~G~a~~~dg~~~t~P~p~g~~~~~~~~~~----~i~~veahGtGT~l 464 (470)
||+|+|+++++||+|+|+|++++|..++.++.. +|+|||+|||||.+
T Consensus 1 Yaei~G~g~~~Dg~~~taP~~~~~~~~~~~al~~a~~~I~~v~aHgtGT~~ 51 (151)
T d2vbaa2 1 YAEIVGYGATSDGADMVAPSGEGAVRCMKMAMHGVDTPIDYLNSHGTSTPV 51 (151)
T ss_dssp CEEEEEEEEEECCSCTTSCCSHHHHHHHHHHHTTCCSCCCEEECCCCSCHH
T ss_pred CEEEEEEEEecCCCCCCCcCHHHHHHHHHHhhhcCcccceeEEEeccCCcc
Confidence 899999999999999999999999877665542 89999999999986
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.75 E-value=2e-08 Score=93.79 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHh
Q 012130 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (470)
Q Consensus 235 ~~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~ 314 (470)
...|+.+++.+||+++|++++ +++ .|++.++.+ +..+ . ....+-..+
T Consensus 102 ~~~la~~Aa~~aL~~a~~~~~---dId----~lI~~t~t~---------------------~~~p----~-~~a~~~~~l 148 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQPKS---KIT----HLIVCTTSG---------------------VDMP----G-ADYQLTKLL 148 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSCGG---GCC----EEEEEESSC---------------------CCSS----C-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChh---HCc----EEEEecccC---------------------CccC----c-cHHHHHHHH
Confidence 346999999999999999986 333 466666532 1111 1 244566667
Q ss_pred CCCCcc--e-eecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecC
Q 012130 315 GWMGPN--Y-SISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356 (470)
Q Consensus 315 gl~Gps--~-tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~ 356 (470)
++.... + .+..+|++++.+|..|.++|++|..+.+||.++|.
T Consensus 149 ~~~~~~~~~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~ 193 (235)
T d1bi5a1 149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEV 193 (235)
T ss_dssp TCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEEC
T ss_pred hcCCCceEEeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeee
Confidence 775543 3 34678999999999999999999999999999997
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.75 E-value=1.5e-08 Score=96.71 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC
Q 012130 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (470)
Q Consensus 237 rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl 316 (470)
.|+..+++++|+++|++++. ++ .|++|+.... +.....++..++...|+
T Consensus 26 dL~~~a~~~al~~~~i~~~~---Id----~vi~G~v~~~------------------------g~~~~n~aR~~al~aGl 74 (273)
T d1ulqa1 26 DLLAHALSVLVDRSGVPKEE---VE----DVYAGCANQA------------------------GEDNRNVARMALLLAGF 74 (273)
T ss_dssp HHHHHHHHHHHHHHTCCGGG---CC----EEEEECSCCS------------------------STTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHH---CC----EEEEEecccc------------------------ccccccHHHHHHHHcCC
Confidence 47788999999999999873 44 6999976321 11112356677777787
Q ss_pred --CCcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 317 --MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 317 --~Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
.-|.++|+.+|+||+.||++|++.|+.|+.|++|+||+|.+..
T Consensus 75 p~~vp~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS~ 119 (273)
T d1ulqa1 75 PVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119 (273)
T ss_dssp CTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSS
T ss_pred CCccceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccccch
Confidence 3489999999999999999999999999999999999998653
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.73 E-value=1.3e-08 Score=96.95 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhCC
Q 012130 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (470)
Q Consensus 237 rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~gl 316 (470)
.|+..+..++|+++|++++.+ + .|++|..... + ....++..++...|+
T Consensus 29 dL~~~~~~~~l~~~~i~~~~I---d----~vi~G~~~~~------------------------~-~~~n~ar~~al~agl 76 (268)
T d1m3ka1 29 ELGATVISAVLERAGVAAGEV---N----EVILGQVLPA------------------------G-EGQNPARQAAMKAGV 76 (268)
T ss_dssp HHHHHHHHHHHHHHTCCGGGC---C----EEEEECSCCT------------------------T-SCSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHC---c----EEEEeecccc------------------------C-cchHHHhHHHHHhCC
Confidence 588899999999999998744 3 5899986311 1 122356678888888
Q ss_pred C--CcceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcc
Q 012130 317 M--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (470)
Q Consensus 317 ~--Gps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~ 359 (470)
. =|.++|+..|+||+.||++|++.|+.|++|++||||+|.+..
T Consensus 77 p~~vpa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS~ 121 (268)
T d1m3ka1 77 PQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSM 121 (268)
T ss_dssp CTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTT
T ss_pred cccccceeecccCcccchHHHHHHHHHhCCCceEEeecccccccc
Confidence 4 488999999999999999999999999999999999999763
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.65 E-value=5.7e-08 Score=88.37 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccCCCeeEEEEeccCCchhhHHHHHHHHHhhhhcCCCccccccchhhHHHHHHHHhC
Q 012130 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (470)
Q Consensus 236 ~rl~L~aa~eALedAG~~~~~~~~~~~~rvGV~vG~~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~g 315 (470)
..|+.+++.+||+++|++++ +++ .|++.++. ++.. + ..+..+...+|
T Consensus 76 ~~la~~Aa~~aL~~ag~~~~---dId----~lI~~s~t---------------------~~~~----P-~~aa~v~~~lg 122 (200)
T d1u0ma1 76 KSRVPAVIQRALDDAELLAT---DID----VIIYVSCT---------------------GFMM----P-SLTAWLINEMG 122 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCGG---GCS----EEEEECSS---------------------SCCS----S-CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCChh---hhh----eEEEeccC---------------------CCCc----c-hhHHHHHHHHh
Confidence 45899999999999999987 333 34445442 1111 1 24678889999
Q ss_pred CCCc--ceee-cCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCCCcCCCCCC--
Q 012130 316 WMGP--NYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR-- 390 (470)
Q Consensus 316 l~Gp--s~tV-~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~~rpFd~~a-- 390 (470)
+... .+.+ ..+|++++.+|+.|..+|++|..+.+||.++|.+. . ..+|-|.+.
T Consensus 123 ~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~S-~---------------------~~~~~d~~~~~ 180 (200)
T d1u0ma1 123 FDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS-L---------------------CYQPTDLGVGS 180 (200)
T ss_dssp CCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGG-G---------------------GCCTTCCSHHH
T ss_pred cCCCeeEeccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEeccc-c---------------------ccCCCCCChhh
Confidence 9764 4455 57999999999999999999999999999999621 1 111212121
Q ss_pred --CcceecceeEeEeecc
Q 012130 391 --DGFVMGEGAGVLLLEE 406 (470)
Q Consensus 391 --dG~v~GEGagalvLe~ 406 (470)
...++|+|++++||..
T Consensus 181 ~~~~~lFgDGAaA~ll~~ 198 (200)
T d1u0ma1 181 LLCNGLFGDGIAAAVVRG 198 (200)
T ss_dssp HHHHHHBCEEEEEEEEET
T ss_pred hhcccccccccEEEEEec
Confidence 1346899999999974
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=98.34 E-value=3.3e-07 Score=80.60 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=61.2
Q ss_pred hHHHHHHHHhCCCC--cceeecCCCchHHHHHHHHHHHHHcCCCCEEEEeeecCCcchhhhHHhhhcccccCCCCCCCCC
Q 012130 305 MGSAMLAMDLGWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKA 382 (470)
Q Consensus 305 ~~a~~is~~~gl~G--ps~tV~tACsSsl~AI~~A~~~Lr~G~~d~aLvGGvd~~l~p~~~~~f~~~~~Ls~~~~~~~~~ 382 (470)
..+..+...+|+.. .++.|..+|+++++||+.|..+|++|....+||.+.|.. +..
T Consensus 86 ~~a~~v~~~lg~~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~---------------~~~------- 143 (166)
T d1xpma1 86 AAAVQIHNLLGIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTA---------------RYG------- 143 (166)
T ss_dssp CHHHHHHHHTTCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEE---------------CCC-------
T ss_pred hhHHHHHHhhccccceEEeeecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceE---------------ecc-------
Confidence 34788888999965 568899999999999999999999999999999999851 100
Q ss_pred CcCCCCCCCcceecceeEeEeeccc
Q 012130 383 SRPWDINRDGFVMGEGAGVLLLEEL 407 (470)
Q Consensus 383 ~rpFd~~adG~v~GEGagalvLe~l 407 (470)
++ ..+-+..|+|++++||++.
T Consensus 144 ---~~-~~~~~~fGDGA~A~ll~~~ 164 (166)
T d1xpma1 144 ---LN-SGGEPTQGAGAVAMVIAHN 164 (166)
T ss_dssp ---TT-CSSGGGCEEEEEEEEEEES
T ss_pred ---CC-CCCCccCCCeeEEEEEecC
Confidence 01 1123568999999999863
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=96.86 E-value=9e-05 Score=56.86 Aligned_cols=44 Identities=9% Similarity=-0.073 Sum_probs=41.5
Q ss_pred CchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 77 ~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+..|.++ +|||.+||++++++...|+. + |++.+|+| ||+..|+
T Consensus 28 ~d~~f~dlG~DSl~~~el~~~le~~~g~~-l----~~~~~~~~-~Ti~~l~ 72 (82)
T d1or5a_ 28 LDTPFVDLGYDSLALLETAAVLQQRYGIA-L----TDETVGRL-GTPRELL 72 (82)
T ss_dssp SSSCHHHHSCCHHHHHHHHHHHHTTSCCC-C----SHHHHHHC-CCSHHHH
T ss_pred cCcCHHHcCCChHhHHHHHHHHHHHHhCc-C----CHHHHHcC-CCHHHHH
Confidence 46789999 99999999999999999999 8 99999999 9999998
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=96.81 E-value=0.00035 Score=53.88 Aligned_cols=51 Identities=10% Similarity=-0.158 Sum_probs=44.6
Q ss_pred ccccCCCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 70 LVSSFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 70 ~~~~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
.+......+..|.++ +|||.++++.++++...|+. + |++.+|+| ||++.|+
T Consensus 24 ~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~-l----~~~~~~~~-~Tv~~l~ 75 (86)
T d2af8a_ 24 TDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVS-I----PDDVAGRV-DTPRELL 75 (86)
T ss_dssp CCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCC-C----CCSTTTTC-CCHHHHH
T ss_pred CCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccC-c----CHHHHHcC-CCHHHHH
Confidence 333444567899999 99999999999999999998 7 88999999 9999998
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=96.67 E-value=0.00032 Score=55.19 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=42.5
Q ss_pred CCCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
....+..|.++ +|||.++|+.++++...|+. + |++.+|+| ||+..|+
T Consensus 27 ~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~-l----~~~~~~~~-~Ti~~l~ 74 (95)
T d1nq4a_ 27 GDVEDVAFDALGYDSLALLNTVGRIERDYGVQ-L----GDDAVEKA-TTPRALI 74 (95)
T ss_dssp SCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCC-S----CTTHHHHC-CSHHHHH
T ss_pred hcccCCCHHHcCCcHHHHHHHHHHHHHHhcCC-C----CHHHHhcC-CCHHHHH
Confidence 33457889999 99999999999999999998 7 88999999 9999998
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.14 E-value=0.0037 Score=50.39 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=41.8
Q ss_pred ccccCCCCchHH-HHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 70 LVSSFSGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 70 ~~~~~~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
+.......+..| .++ +|||+.+++.+.+....|+. + +.+.+|++ +|...|+
T Consensus 22 ~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~-i----~~~~~~~~-~Tv~~l~ 74 (115)
T d1klpa_ 22 IEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVK-I----PDEDLAGL-RTVGDVV 74 (115)
T ss_dssp CCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCC-C----CHHHHTTC-CSHHHHH
T ss_pred CCccccCcccchhhhcccchhHHHHHHHHHHHHHCCC-C----CHHHHHhC-ccHHHHH
Confidence 333444455566 579 99999999999999999988 7 88889999 9999998
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=93.64 E-value=0.017 Score=49.27 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=13.3
Q ss_pred cccEEEEeeeccee
Q 012130 451 SVQMKSLNGFGKFY 464 (470)
Q Consensus 451 ~i~~veahGtGT~l 464 (470)
+|+|||+|||||.+
T Consensus 43 di~yveaHGtGT~~ 56 (161)
T d2ix4a2 43 QIDYVNAHATSTPI 56 (161)
T ss_dssp GCCEEECCCCSCHH
T ss_pred ccCEEEEeccCCCC
Confidence 99999999999986
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.42 E-value=0.01 Score=44.08 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=38.4
Q ss_pred cCCCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 73 SFSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 73 ~~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
...+.+..|.++ +|||+++|+++|++...|+. + +.+.+| + +|-..|+
T Consensus 23 ~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~-l----~~~~l~-~-~Ti~~L~ 70 (76)
T d2pnga1 23 AGINLDSSLADLGLDSLMGVEVRQILEREHDLV-L----PIREVR-Q-LTLRKLQ 70 (76)
T ss_dssp TTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCC-C----CHHHHT-T-CCSHHHH
T ss_pred hhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCC-C----CHHHHH-H-hhHHHHH
Confidence 445678999999 99999999999999999988 6 776654 4 6766665
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=92.03 E-value=0.0071 Score=45.02 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=40.5
Q ss_pred CCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 76 GSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 76 ~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
+.+..|.++ +|||+++++.++++...|+. + +.+.+|+| ||...|+
T Consensus 26 ~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~-l----~~~~l~~~-pTi~~LA 71 (76)
T d2gdwa1 26 GILDNFFQIGGHSLKAMAVAAQVHREYQVE-L----PLKVLFAQ-PTIKALA 71 (76)
T ss_dssp CTTTTSSTTTCTTHHHHHHHHHHHHTTSSC-C----TTHHHHHS-CSHHHHH
T ss_pred CCCCCHHHcCCChHHHHHHHHHHHHHHCCC-C----CHHHHHcC-CCHHHHH
Confidence 456778888 99999999999999999988 7 88899999 9998888
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| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=90.92 E-value=0.033 Score=40.82 Aligned_cols=46 Identities=9% Similarity=-0.135 Sum_probs=38.6
Q ss_pred CCCchHH-HHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 75 SGSSHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 75 ~~~~~~f-~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
...+..| .++ +|||..+|+.+.+...+|+. + |...+|++ +|...+.
T Consensus 23 i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~-i----~~~~~~~~-~Tv~~l~ 70 (74)
T d1f80d_ 23 VKLEASFKEDLGADXLDVVELVMELEDEFDME-I----SDEDAEKI-ATVGDAV 70 (74)
T ss_dssp CCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCC-C----CHHHHHHC-CBHHHHH
T ss_pred cCCCccHHHhcCccHhHHHHHHHHHHHHhCCC-C----CHHHHhcC-CCHHHHH
Confidence 3445556 578 99999999999999999998 7 88888998 8887776
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.48 E-value=0.12 Score=38.52 Aligned_cols=48 Identities=6% Similarity=-0.047 Sum_probs=39.9
Q ss_pred CCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCC-CCChHHHHH
Q 012130 75 SGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGS-NNSTATLNR 127 (470)
Q Consensus 75 ~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~-~ptp~~la~ 127 (470)
.+.+..|.++ +|||.++|+.+++....|+. + |...+|.+ -||...|+.
T Consensus 22 i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~-i----~~~~l~~~~~~Ti~~la~ 71 (83)
T d2jq4a1 22 IADEADLYAAGLSSFASVQLMLGIEEAFDIE-F----PDNLLNRKSFASIKAIED 71 (83)
T ss_dssp CCTTSCGGGGTCCHHHHHHHHHHHHHHHSCC-C----CHHHHSSGGGGCHHHHHH
T ss_pred cCCCCCHHHHhCccHHHHHHHHHHHHHHCCC-C----CHHHHHHHHHhhHHHHHH
Confidence 4557778899 99999999999999999998 7 77777863 288888883
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=87.00 E-value=0.047 Score=40.90 Aligned_cols=47 Identities=6% Similarity=-0.060 Sum_probs=41.0
Q ss_pred CCCCchHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEeeCCCCChHHHH
Q 012130 74 FSGSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (470)
Q Consensus 74 ~~~~~~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F~~~ptp~~la 126 (470)
....+..|.++ +|||..+++.+.+....|+. + |...+|++ +|...++
T Consensus 27 ~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~-i----~~~~~~~~-~Tv~~l~ 74 (85)
T d1vkua_ 27 TVDEENTFKELGFDSIDVIDLVMFFEDEFALR-I----EDEEISKI-RKVKDLI 74 (85)
T ss_dssp SCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCC-C----CHHHHTTC-CBHHHHH
T ss_pred HCCCCCCHHHhcCcchHHHHHHHHHHHHccCC-C----CHHHHHHc-CCHHHHH
Confidence 34456778899 99999999999999999998 7 88888998 8988887
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=82.53 E-value=0.1 Score=38.58 Aligned_cols=42 Identities=12% Similarity=-0.047 Sum_probs=35.4
Q ss_pred hHHHHH-HHhhchhhhhhhhhhhhccccccCCCCceEee--CCCCChHHHH
Q 012130 79 HSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFF--GSNNSTATLN 126 (470)
Q Consensus 79 ~~f~~l-~dSl~avel~n~l~~~~gl~~l~~~~~~t~~F--~~~ptp~~la 126 (470)
++|..+ +|||..||+.+++....|+. + |++-+| ++ +|+..++
T Consensus 29 ~l~e~gglDSl~~vel~~~ie~~fgi~-i----~~~~l~~~~~-~Tv~~l~ 73 (80)
T d1dv5a_ 29 NLFETGLLDSMGTVQLLLELQSQFGVD-A----PVSEFDRKEW-DTPNKII 73 (80)
T ss_dssp CSSTTSSCCSHHHHHHHHHHTTTSCCC-C----CCSSCCTTTT-TSHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHHCCC-C----CHHHhhHHhC-CCHHHHH
Confidence 344556 89999999999999999998 7 888888 46 8998888
|