Citrus Sinensis ID: 012132
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| Q9R9N2 | 351 | Lipopolysaccharide core b | yes | no | 0.463 | 0.621 | 0.246 | 2e-11 | |
| D2Q1C4 | 424 | D-inositol 3-phosphate gl | yes | no | 0.372 | 0.412 | 0.293 | 3e-09 | |
| P46915 | 377 | Spore coat protein SA OS= | yes | no | 0.4 | 0.498 | 0.281 | 2e-08 | |
| P39862 | 380 | Capsular polysaccharide b | yes | no | 0.378 | 0.468 | 0.268 | 6e-08 | |
| C3PK12 | 421 | D-inositol 3-phosphate gl | yes | no | 0.423 | 0.472 | 0.260 | 9e-07 | |
| C7R101 | 424 | D-inositol 3-phosphate gl | yes | no | 0.306 | 0.339 | 0.287 | 1e-06 | |
| A1R8N8 | 408 | D-inositol 3-phosphate gl | no | no | 0.459 | 0.529 | 0.250 | 1e-06 | |
| Q8X0H8 | 471 | Alpha-1,3/1,6-mannosyltra | N/A | no | 0.202 | 0.201 | 0.378 | 1e-06 | |
| Q8FSH1 | 424 | D-inositol 3-phosphate gl | yes | no | 0.406 | 0.450 | 0.275 | 2e-06 | |
| O34413 | 407 | Putative glycosyltransfer | no | no | 0.414 | 0.479 | 0.273 | 3e-06 |
| >sp|Q9R9N2|LPSB_RHIME Lipopolysaccharide core biosynthesis mannosyltransferase LpsB OS=Rhizobium meliloti (strain 1021) GN=lpsB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 98/239 (41%), Gaps = 21/239 (8%)
Query: 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286
+ +P+T ++H ++K + AK+ +LG+ V KG D
Sbjct: 132 LDVPNTVILHGIDTKRFQPPFDKTEAKK--------ALGLDPAKKFVGCFGRVRHQKGTD 183
Query: 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
LF+ S L P A++ G FESEL+ V + + DR+ FV +
Sbjct: 184 LFVDSMIALLPC-------RPDWGAIVAGRATGPHLAFESELKERVAKAGLADRILFVGE 236
Query: 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT--TGL 404
+ + A+D+ V Q W E FG +EAMA +PV+ T G +E+V G+ TGL
Sbjct: 237 HTNIPDWYRALDLFVA-PQRW-EGFGLTPLEAMATGVPVVATDVGAFSELVTGGSEETGL 294
Query: 405 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463
+ + + + + R G R + F A IA V + +++
Sbjct: 295 I--IAADDLKAMVDAAAAFMDDRPRLAAASANGLARTSKNFAIEQEARAIAAVYESLMR 351
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Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2EC: .EC: 4EC: .EC: -EC: .EC: - |
| >sp|D2Q1C4|MSHA_KRIFD D-inositol 3-phosphate glycosyltransferase OS=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 9/184 (4%)
Query: 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320
R ++GVR + ++ A + + K DL + + LE ++ +L V AVI G N
Sbjct: 223 RRAVGVREDAIVLAFVGRIQPLKAPDLLIRAAARMLE--RQPELRDRLVVAVIGGPSGNG 280
Query: 321 QTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEA 378
E+ + + D FV +A + A V+ S + E FG + +EA
Sbjct: 281 MEHPEAHA-ELARRLGVDDVTRFVKPMPRPGLADWYRAASVVCVPS--YSESFGLVALEA 337
Query: 379 MAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438
A PV+ A GG T V +G TGLL P G+ A + +AT R TMGK
Sbjct: 338 QACGTPVVAAAVGGLTTAVTDGVTGLLVP--GHGVDDFADALAAIATDPGTRETMGKAAV 395
Query: 439 ERVK 442
E +
Sbjct: 396 EHAQ 399
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) (taxid: 479435) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|P46915|COTSA_BACSU Spore coat protein SA OS=Bacillus subtilis (strain 168) GN=cotSA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 25/213 (11%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
RE +R LG+ + ++ + +S+ KG + L + + +E E P V V IGS
Sbjct: 179 REEMRSELGLHGKKIVL-FVGRLSKVKGPHILLQALPDIIE-------EHPDVMMVFIGS 230
Query: 317 DMNAQTKFESELRNYV--------MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368
++EL NYV MQK + FV K + DV V +SQ W
Sbjct: 231 KWFG----DNELNNYVKHLHTLGAMQKDHVTFIQFV-KPKDIPRLYTMSDVFVCSSQ-WQ 284
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTG-LLHPVGKEGITPLAKNIVKLATHV 427
E R+ EAMA LP++ + GG E++ G G ++H E A+ I L +
Sbjct: 285 EPLARVHYEAMAAGLPIITSNRGGNPEVIEEGKNGYIIHDF--ENPKQYAERINDLLSSS 342
Query: 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460
E+R +GK + F +AE + V ++
Sbjct: 343 EKRERLGKYSRREAESNFGWQRVAENLLSVYEK 375
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 4 EC: . EC: - EC: . EC: - |
| >sp|P39862|CAPM_STAAU Capsular polysaccharide biosynthesis glycosyltransferase CapM OS=Staphylococcus aureus GN=capM PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327
N++ + + + + KG +H +S ++I K +V ++IGS + ES+
Sbjct: 195 NDNFVIGYVGRIVKDKG----IHELIQSFKIIVSKGY---NVKLLVIGSLETENSIDESD 247
Query: 328 L------RNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381
N V+ K + D + F N ++V V + G FG ++IEA A
Sbjct: 248 YLFLTQNPNVVLIKHVSDPISFYNN----------MNVFVFPTHREG--FGNVSIEAQAL 295
Query: 382 QLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441
++PV+ T G + VVNG TG + V K +A+ I KL R T+G G +RV
Sbjct: 296 EVPVITTNVTGAIDTVVNGETGFI--VEKGDFKAIAEKIEKLINDESLRETIGHNGRKRV 353
Query: 442 KEIFQEHHMAERIAVVLKEVLKKSK 466
+ F + E + + LK+S+
Sbjct: 354 ENKFSSQIIWEELESMYNTFLKESE 378
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Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 2 EC: . EC: 4 EC: . EC: - EC: . EC: - |
| >sp|C3PK12|MSHA_CORA7 D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 230 PDT-YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
PD VV G +L D + +R R+ LG+ + A + + + KG D+
Sbjct: 187 PDNIVVVSPGADTDLYTPGTDRMTERARRQ-----LGIPLHTKVVAFVGRLQKFKGPDVL 241
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
+ + E +E +++L V VI G A + ++ N + ++ V F++
Sbjct: 242 IRATAELMERDPDRRLRV-----VICGGASGANSSPDT-YHNLARELGVERVVRFLSPRP 295
Query: 349 T---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405
VA Y AA V V + + E FG + +EA A PV+ A GG V +G TGLL
Sbjct: 296 PQELVAIYQAADIVAVPS---YNESFGLVAMEAQASGTPVVAAAVGGLPIAVADGDTGLL 352
Query: 406 HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444
V A + +L RR++MG+ + ++
Sbjct: 353 --VHSHSAQDWADALEQLLDDDPRRISMGEAAVDHAQQF 389
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) (taxid: 548476) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|C7R101|MSHA_JONDD D-inositol 3-phosphate glycosyltransferase OS=Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R+ R +LG+ E + + KG D+ + ++L L++ ++ + P VIIG
Sbjct: 219 RQAERVALGLAPEGDVIVFAGRIQPLKGPDVLV----DALALLRSQQPDRPMPTLVIIGG 274
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRI 374
ELR V Q+ + V FV T+A ++ D + S+ E FG +
Sbjct: 275 PSGRPAAL-GELRARVFQRGVAQHVRFVPPADRPTLAQWMRVADYVAMPSR--NESFGLV 331
Query: 375 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP 407
IEA A PV+ GG T V + +GLL P
Sbjct: 332 AIEAQACGTPVIAADVGGLTTAVAHKKSGLLVP 364
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) (taxid: 471856) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|A1R8N8|MSHA_ARTAT D-inositol 3-phosphate glycosyltransferase OS=Arthrobacter aurescens (strain TC1) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 35/251 (13%)
Query: 231 DTYVVHLGNSKELMEVAEDNVAKRVL----REHVRESLGVRNEDLLFAIINSVSRGKGQD 286
D V H G + ++VA V +V R R GVR + + R KG
Sbjct: 176 DELVSHYGADLDRIDVAPPGVDLKVFTPSFRRKSRSLRGVRPDSFHILFAGRIQRLKGPQ 235
Query: 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
+F+ ++ ++++++ ++ + I+GS A+ + L++++ + D V ++
Sbjct: 236 VFV----KAAGILRKRRPDI-DLEMTILGSLSGAK---DFNLQHFIEDAGLADVV--THR 285
Query: 347 TLTVAPYLAA----IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTT 402
VAP LA+ DV+V S + E FG + +EA A PV+ T GG + + +G T
Sbjct: 286 PPVVAPELASWFRSADVVVMPS--FSESFGLVALEAQACGTPVVATNVGGLSRAISDGRT 343
Query: 403 GLL----HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458
G+L HP + A + L V+ R MG R+ E +R A +
Sbjct: 344 GILVDGHHP------SDWADALEDLYDDVQTREDMG-----RLAATHAESFGWQRTAAIT 392
Query: 459 KEVLKKSKSHL 469
E +++ S L
Sbjct: 393 LESYREAVSGL 403
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Arthrobacter aurescens (strain TC1) (taxid: 290340) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|Q8X0H8|ALG2_NEUCR Alpha-1,3/1,6-mannosyltransferase alg-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=alg-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428
E FG + +EAM +PVL GG TE VV G TG L G + V E
Sbjct: 345 EHFGIVPLEAMLRGVPVLAANNGGPTETVVEGETGWLRDPNDVGEWAKVMDKVLNGMGEE 404
Query: 429 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463
MGK+G ERVK F + MAER+ +++ + K
Sbjct: 405 ELKRMGKKGVERVKGRFADTQMAERLEEIIERMPK 439
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Mannosylates Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 7 |
| >sp|Q8FSH1|MSHA_COREF D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 23/214 (10%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
VV G L D +R RE LGV + A + + KG + +H+
Sbjct: 192 VVSPGADIALYTPGNDRATERSRRE-----LGVPLHAKVVAFVGRLQPFKGPQVLIHAVA 246
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT---V 350
E LE ++ L V +I G E+ RN ++ + R+ F++ V
Sbjct: 247 ELLERDPQRNLRV-----LICGGPSGPSATPET-YRNLAVELGVDKRIRFLDPRPPEELV 300
Query: 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK 410
A Y AA D++ S + E FG + +EA A PV+ GG V G TGLL
Sbjct: 301 AVYRAA-DIIAVPS--YNESFGLVAMEAQATGTPVVAARVGGLPVAVAEGETGLL----V 353
Query: 411 EGITPL--AKNIVKLATHVERRLTMGKRGYERVK 442
+G P A + L E R+ MG+ E +
Sbjct: 354 DGHDPALWADTLATLLDDDETRIRMGQDAVEHAR 387
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) (taxid: 196164) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|O34413|YTCC_BACSU Putative glycosyltransferase YtcC OS=Bacillus subtilis (strain 168) GN=ytcC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 17/212 (8%)
Query: 256 LREHVRESLGVRNED-LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
+R+ R+ G+ ++ +LFA +S KG L +HS L+ + P VI
Sbjct: 178 VRKTYRKKYGIEDKKVILFA--GRLSPTKGPHLLIHSMRRILQ-------QHPDAVLVIA 228
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI----DVLVQNSQAWGEC 370
G + E++ Y+ + R H + A + + DV V +SQ W E
Sbjct: 229 GGKWFSDDS-ENQYVTYLRTLALPYRDHIIFTKFIPADDIPNLFLMADVFVCSSQ-WNEP 286
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
R+ EAMA P++ T GG E+V + TGL+ + + AK I + T E
Sbjct: 287 LARVNYEAMAAGTPLITTNRGGNGEVVKHEVTGLVIDSYNKP-SSFAKAIDRAFTDQELM 345
Query: 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462
M K + V+ +F H A+R+ V + VL
Sbjct: 346 NKMTKNARKHVEALFTFTHAAKRLNTVYQSVL 377
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 4 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 224133786 | 481 | predicted protein [Populus trichocarpa] | 0.991 | 0.968 | 0.822 | 0.0 | |
| 302142552 | 463 | unnamed protein product [Vitis vinifera] | 0.982 | 0.997 | 0.782 | 0.0 | |
| 225458171 | 479 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.972 | 0.763 | 0.0 | |
| 147771878 | 495 | hypothetical protein VITISV_033235 [Viti | 0.974 | 0.925 | 0.770 | 0.0 | |
| 356518559 | 464 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.993 | 0.762 | 0.0 | |
| 255538754 | 477 | glycosyltransferase, putative [Ricinus c | 0.978 | 0.964 | 0.758 | 0.0 | |
| 449436130 | 472 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.961 | 0.764 | 0.0 | |
| 225431277 | 466 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.993 | 0.747 | 0.0 | |
| 15222229 | 463 | UDP-glycosyltransferase-like protein [Ar | 0.957 | 0.971 | 0.757 | 0.0 | |
| 297839425 | 458 | glycosyl transferase family 1 protein [A | 0.946 | 0.971 | 0.754 | 0.0 |
| >gi|224133786|ref|XP_002327680.1| predicted protein [Populus trichocarpa] gi|222836765|gb|EEE75158.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/472 (82%), Positives = 423/472 (89%), Gaps = 6/472 (1%)
Query: 3 KHSATGWWVP--LTKRWILALLIMLSISTAIAFFIRAALDPCD----RHLEVSDKKRVQS 56
+HS T W P + KRW+L LLIMLS+ST IAFFI++A D CD + +V+ +
Sbjct: 7 QHSNTAGWAPPSVQKRWLLTLLIMLSVSTLIAFFIKSAFDSCDPPHPHNFDVAASNKPAK 66
Query: 57 QSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116
I T SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLR VGT+V WITIQKPS
Sbjct: 67 VFSNSIKTAPSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRSVGTEVFWITIQKPS 126
Query: 117 EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRV 176
E DEV+YSLE KM RGVQV+SAKGQE I+TA KADL+VLNTAVAGKWLDAVLKE+VPRV
Sbjct: 127 ETDEVVYSLEQKMLVRGVQVLSAKGQEAIDTAFKADLVVLNTAVAGKWLDAVLKENVPRV 186
Query: 177 LPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236
LP VLWWIHEMRGHYFKLDYVKHLPLV GAMIDSHVTAEYWKNRT+ERLRIKMP+TYVVH
Sbjct: 187 LPKVLWWIHEMRGHYFKLDYVKHLPLVGGAMIDSHVTAEYWKNRTQERLRIKMPETYVVH 246
Query: 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296
LGNSKELMEVAED+VAKRVLREH+RESLGVR+ED+LFAIINSVSRGKGQDLFL SFYESL
Sbjct: 247 LGNSKELMEVAEDSVAKRVLREHIRESLGVRDEDILFAIINSVSRGKGQDLFLRSFYESL 306
Query: 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 356
++I+ KKL+VPS+HAVI+GSDM+AQTKFE+ELRNYVMQK IQDRVHF+NKTLTVAPYLAA
Sbjct: 307 QIIQVKKLKVPSMHAVIVGSDMSAQTKFETELRNYVMQKNIQDRVHFINKTLTVAPYLAA 366
Query: 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPL 416
IDVLVQNSQA GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH VGKEG+TPL
Sbjct: 367 IDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHSVGKEGVTPL 426
Query: 417 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 468
AKNIVKLATHVERRLTMGKRGYERV+E+F EHHMA RIA VLKEVL+KSKSH
Sbjct: 427 AKNIVKLATHVERRLTMGKRGYERVREMFLEHHMAHRIASVLKEVLRKSKSH 478
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142552|emb|CBI19755.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/470 (78%), Positives = 415/470 (88%), Gaps = 8/470 (1%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVP 60
M K S + W+ KRW L L+ +LS ST I IRAA D C+ + R+Q S
Sbjct: 1 MAKQSTS--WLTFHKRWPLLLVALLSTSTVIVLLIRAASDSCN----TNSNTRIQVTS-- 52
Query: 61 RIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE 120
++ T S+PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG +V W+TIQKP++ DE
Sbjct: 53 QVETPSNPLRFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWLTIQKPTDSDE 112
Query: 121 VIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180
VIYSLEH+M DRGV+V AKGQE I+TALKADL+VLNTAVAGKWLD+V+KE+VPR+LP V
Sbjct: 113 VIYSLEHRMLDRGVKVFPAKGQEAIDTALKADLVVLNTAVAGKWLDSVVKENVPRILPKV 172
Query: 181 LWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240
LWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRERL IKMP+TYVVHLGNS
Sbjct: 173 LWWIHEMRGHYFKLEYVKHLPYVAGAMIDSHTTAEYWKNRTRERLGIKMPETYVVHLGNS 232
Query: 241 KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300
KELME+AE+NVAKRVLREHVRESLGVRNEDLLFA+INSVSRGKGQDLFL SFY+SL+LIK
Sbjct: 233 KELMEIAENNVAKRVLREHVRESLGVRNEDLLFAVINSVSRGKGQDLFLRSFYQSLQLIK 292
Query: 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 360
+KL+VPS+HAVI+GSDMNAQTKFE+ELRN+V++ KIQD+VHF+NKTLTVAPYLA+IDVL
Sbjct: 293 GRKLQVPSIHAVIVGSDMNAQTKFETELRNFVVENKIQDQVHFINKTLTVAPYLASIDVL 352
Query: 361 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420
VQNSQA GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH VGKEG+ PLA NI
Sbjct: 353 VQNSQARGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHNVGKEGVKPLANNI 412
Query: 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSHLY 470
VKLAT+VERRLTMGKRGYERVKE F EHHM+ERIA VLKEVLKK+++H +
Sbjct: 413 VKLATNVERRLTMGKRGYERVKERFLEHHMSERIASVLKEVLKKAENHAF 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458171|ref|XP_002281084.1| PREDICTED: uncharacterized protein LOC100257473 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/482 (76%), Positives = 417/482 (86%), Gaps = 16/482 (3%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVS----------- 49
M K S + W+ KRW L L+ +LS ST I IRAA D C+ + +
Sbjct: 1 MAKQSTS--WLTFHKRWPLLLVALLSTSTVIVLLIRAASDSCNTNSVTTTTTITTTPHYS 58
Query: 50 -DKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108
+ R+Q S ++ T S+PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG +V
Sbjct: 59 YENTRIQVTS--QVETPSNPLRFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV 116
Query: 109 WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAV 168
W+TIQKP++ DEVIYSLEH+M DRGV+V AKGQE I+TALKADL+VLNTAVAGKWLD+V
Sbjct: 117 WLTIQKPTDSDEVIYSLEHRMLDRGVKVFPAKGQEAIDTALKADLVVLNTAVAGKWLDSV 176
Query: 169 LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228
+KE+VPR+LP VLWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRERL IK
Sbjct: 177 VKENVPRILPKVLWWIHEMRGHYFKLEYVKHLPYVAGAMIDSHTTAEYWKNRTRERLGIK 236
Query: 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
MP+TYVVHLGNSKELME+AE+NVAKRVLREHVRESLGVRNEDLLFA+INSVSRGKGQDLF
Sbjct: 237 MPETYVVHLGNSKELMEIAENNVAKRVLREHVRESLGVRNEDLLFAVINSVSRGKGQDLF 296
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
L SFY+SL+LIK +KL+VPS+HAVI+GSDMNAQTKFE+ELRN+V++ KIQD+VHF+NKTL
Sbjct: 297 LRSFYQSLQLIKGRKLQVPSIHAVIVGSDMNAQTKFETELRNFVVENKIQDQVHFINKTL 356
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV 408
TVAPYLA+IDVLVQNSQA GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH V
Sbjct: 357 TVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHNV 416
Query: 409 GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 468
GKEG+ PLA NIVKLAT+VERRLTMGKRGYERVKE F EHHM+ERIA VLKEVLKK+++H
Sbjct: 417 GKEGVKPLANNIVKLATNVERRLTMGKRGYERVKERFLEHHMSERIASVLKEVLKKAENH 476
Query: 469 LY 470
+
Sbjct: 477 AF 478
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771878|emb|CAN73426.1| hypothetical protein VITISV_033235 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/474 (77%), Positives = 409/474 (86%), Gaps = 16/474 (3%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVS----------- 49
M K S + W+ KRW L L+ +LS ST I IRAA D C+ + +
Sbjct: 1 MAKQSTS--WLTFHKRWPLLLVALLSTSTVIVLLIRAASDSCNTNSVTTTTTITTTPHYS 58
Query: 50 -DKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108
+ R+Q S ++ T S+PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG +V
Sbjct: 59 YENTRIQVTS--QVETPSNPLRFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV 116
Query: 109 WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAV 168
W+TIQKP++ DEVIYSLEH+M DRGV+V AKGQE I+TALKADL+VLNTAVAGKWLD+V
Sbjct: 117 WLTIQKPTDSDEVIYSLEHRMLDRGVKVFPAKGQEAIDTALKADLVVLNTAVAGKWLDSV 176
Query: 169 LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228
+KE+VPR+LP VLWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRERL IK
Sbjct: 177 VKENVPRILPKVLWWIHEMRGHYFKLEYVKHLPYVAGAMIDSHTTAEYWKNRTRERLGIK 236
Query: 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
MP+TYVVHLGNSKELME+AE+NVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF
Sbjct: 237 MPETYVVHLGNSKELMEIAENNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 296
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
L SFY+SL+LIK +KL+VPS+HAVI+GSDMNAQTKFE+ELRN+V++ KIQD+VHF+NKTL
Sbjct: 297 LRSFYQSLQLIKGRKLQVPSIHAVIVGSDMNAQTKFETELRNFVVENKIQDQVHFINKTL 356
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV 408
TVAPYLA+IDVLVQNSQA GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH V
Sbjct: 357 TVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHNV 416
Query: 409 GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462
GKEG+ PLA NIVKLAT+VERRLTMGKRGYERVKE F EHHM+ERIA VLKE L
Sbjct: 417 GKEGVKPLANNIVKLATNVERRLTMGKRGYERVKERFLEHHMSERIASVLKEEL 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518559|ref|XP_003527946.1| PREDICTED: uncharacterized protein LOC100791337 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/468 (76%), Positives = 403/468 (86%), Gaps = 7/468 (1%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAA-LDPCD-RHLEVSDKKRVQSQS 58
M KHS KRW + L LS+ST +R+ D C+ H V+ +++S
Sbjct: 1 MAKHSVA----MAKKRWPIMLAAFLSVSTVTVLLMRSNNSDSCNTNHFTVAQDNQIRS-P 55
Query: 59 VPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE 118
V SSPL FMKSKLVL+VSHELSLSGGPLLLMELAFLLRGVG+ V WI+ QKPSE
Sbjct: 56 VQLTNAASSPLIFMKSKLVLMVSHELSLSGGPLLLMELAFLLRGVGSDVVWISNQKPSEH 115
Query: 119 DEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLP 178
D V+YSLE KM DRGVQV+SAKG+ I+TALKAD+++LNTAVAGKWLDA+LKE V VLP
Sbjct: 116 DRVVYSLESKMLDRGVQVLSAKGENAIDTALKADMVILNTAVAGKWLDAILKEKVAHVLP 175
Query: 179 NVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238
VLWWIHEMRGHYFK++YVKHLP VAGAMIDSH TAEYWKNRTRERL I+MP+TYVVHLG
Sbjct: 176 KVLWWIHEMRGHYFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIEMPETYVVHLG 235
Query: 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298
NSKELMEVAED+VAKRVLREHVRESLGVRN+DLLFAIINSVSRGKGQDLFL SFYESL+L
Sbjct: 236 NSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQDLFLRSFYESLQL 295
Query: 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 358
I+EKKL++P +HAVI+GSDMNAQTKFE ELR +V++KKIQ+RVHFVNKTL VAPYLAAID
Sbjct: 296 IQEKKLQLPFLHAVIVGSDMNAQTKFEMELRKFVVEKKIQNRVHFVNKTLAVAPYLAAID 355
Query: 359 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 418
VLVQNSQA GECFGRITIEAMAF+LPVLGTAAGGT EIVVNGTTGLLHPVGKEG+TPLAK
Sbjct: 356 VLVQNSQARGECFGRITIEAMAFRLPVLGTAAGGTMEIVVNGTTGLLHPVGKEGVTPLAK 415
Query: 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 466
NIVKLA+HVE+RLTMGK+GYERVKE F EHHM++RIA+VLKEVL+K+K
Sbjct: 416 NIVKLASHVEKRLTMGKKGYERVKERFLEHHMSQRIALVLKEVLQKAK 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538754|ref|XP_002510442.1| glycosyltransferase, putative [Ricinus communis] gi|223551143|gb|EEF52629.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/484 (75%), Positives = 403/484 (83%), Gaps = 24/484 (4%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDP---------------CDRH 45
M K S + W RW L +L ++ST I F IR+A D DR
Sbjct: 1 MAKQS-SAWITKHKNRWPLMILAFFTLSTLIVFSIRSASDSCHSSSNITTTATTANVDRF 59
Query: 46 LE--VSDKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV 103
E V K ++ S P +PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV
Sbjct: 60 GEPKVDSKPQIHSSVAP------NPLDFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV 113
Query: 104 GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGK 163
G +V WIT QKP+E DEVIYSLE+KM DRGVQV SAKGQ+ I+TALKADL+VLNTAVAGK
Sbjct: 114 GAEVVWITNQKPTETDEVIYSLENKMLDRGVQVFSAKGQKAIDTALKADLVVLNTAVAGK 173
Query: 164 WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223
WLDA LKE V +VLP VLWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRE
Sbjct: 174 WLDATLKESVQQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSHTTAEYWKNRTRE 233
Query: 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK 283
RL IKMP+TYVVHLGNSK+LMEVAED+VAKRVL EHVRESLGVRN+DLLFAIINSVSRGK
Sbjct: 234 RLGIKMPETYVVHLGNSKDLMEVAEDSVAKRVLCEHVRESLGVRNDDLLFAIINSVSRGK 293
Query: 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343
GQDLFL SFYESL+LI+EKKL+VPS+HAV++GSDMNAQTKFE ELR +V +KKIQDRVHF
Sbjct: 294 GQDLFLRSFYESLQLIQEKKLKVPSLHAVVVGSDMNAQTKFEMELRKFVQEKKIQDRVHF 353
Query: 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTG 403
VNKTLTVAPYLA+IDVLVQNSQA GECFGRITIEAMAFQLPVLGTAAGGT EIVVNGTTG
Sbjct: 354 VNKTLTVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTG 413
Query: 404 LLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463
LLHP GKEG+TPLA NIVKLATHVERRLTMGK GY+RVKE F EHHM+ RIA+VLKEVL+
Sbjct: 414 LLHPAGKEGVTPLANNIVKLATHVERRLTMGKNGYKRVKERFLEHHMSHRIALVLKEVLR 473
Query: 464 KSKS 467
K+K+
Sbjct: 474 KAKT 477
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436130|ref|XP_004135847.1| PREDICTED: uncharacterized protein LOC101206589 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/458 (76%), Positives = 400/458 (87%), Gaps = 4/458 (0%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPC---DRHLEVSDKKRVQSQSVPRIATKS-SPLS 70
KRW L +L ++SISTA+ FF+R D C D V +K P+ K+ +PL
Sbjct: 14 KRWPLMILALVSISTAMVFFMRTTFDSCTGNDNRRFVEEKGIGSKILSPQNERKAPNPLD 73
Query: 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW 130
FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT+V WIT QKP E DEV+YSLE KM
Sbjct: 74 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTQVVWITNQKPPEPDEVVYSLERKML 133
Query: 131 DRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH 190
DRGVQV+SAK QE + TALKA L+VLNTAVAGKWLDAVLKE+VPRVLP VLWWIHEMRG+
Sbjct: 134 DRGVQVLSAKEQEAVETALKAHLVVLNTAVAGKWLDAVLKENVPRVLPKVLWWIHEMRGN 193
Query: 191 YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN 250
YFK++YVKHLP VAGAMIDSH TAEYWKNRT +RL I+MP+TYVVHLGNSK+LMEVAE+N
Sbjct: 194 YFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTWDRLGIQMPETYVVHLGNSKDLMEVAENN 253
Query: 251 VAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310
VAKRVLREH+RESLGVRNED+LFAIINSVSRGKGQDLFL +F++SL++I++KKL VP +H
Sbjct: 254 VAKRVLREHIRESLGVRNEDILFAIINSVSRGKGQDLFLRAFHQSLQMIQDKKLRVPRIH 313
Query: 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370
AV++GSDMNA TKFE+ELRN+V + KIQDRVHFVNKTL+VAPYLA+IDVLVQNSQ GEC
Sbjct: 314 AVVVGSDMNAHTKFETELRNFVNENKIQDRVHFVNKTLSVAPYLASIDVLVQNSQGRGEC 373
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
FGRITIEAMAFQLPVLGTAAGGT EIVVNGTTGLLHP GKEG+TPLA NIVKLATHVERR
Sbjct: 374 FGRITIEAMAFQLPVLGTAAGGTMEIVVNGTTGLLHPAGKEGVTPLAHNIVKLATHVERR 433
Query: 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 468
LTMGK+GYERV+++F E HM +RIAVVLK+V++K+KSH
Sbjct: 434 LTMGKKGYERVRQMFLEQHMMQRIAVVLKKVMEKAKSH 471
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431277|ref|XP_002268739.1| PREDICTED: uncharacterized protein LOC100243789 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/468 (74%), Positives = 396/468 (84%), Gaps = 5/468 (1%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVP 60
M +HSA + L K+++ AL+ S+ T + RA CDRH SD + + +P
Sbjct: 1 MARHSAPRF--SLRKKFLFALVFFFSVPTVVFLIKRAPSISCDRH---SDAGVKRFEPLP 55
Query: 61 RIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE 120
+ SPLSFMKSK VLLVSHELSLSGGPLLLMELAFLLR VG +V WIT KPSE DE
Sbjct: 56 QFGAAPSPLSFMKSKRVLLVSHELSLSGGPLLLMELAFLLRSVGAEVCWITNHKPSETDE 115
Query: 121 VIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180
VIYSLE+KM RGVQV+ AKG+E IN ALKADL+VLNT +AGKWLD VLKE+VP VLP V
Sbjct: 116 VIYSLENKMQHRGVQVLPAKGREAINRALKADLLVLNTVMAGKWLDDVLKENVPHVLPKV 175
Query: 181 LWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240
LWWIHE++GHYF+L+YV+HLPLVA AMIDSHV AEYWK TR+ LRIKMPDTYVVHLGNS
Sbjct: 176 LWWIHEIQGHYFQLEYVRHLPLVAAAMIDSHVAAEYWKTGTRDYLRIKMPDTYVVHLGNS 235
Query: 241 KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300
K+LM++AED+VAKRVLREHVRESLGVR+ED+LFA+INSVSRGKGQDLFL SFYESL+LI
Sbjct: 236 KDLMDIAEDSVAKRVLREHVRESLGVRDEDVLFAMINSVSRGKGQDLFLQSFYESLQLII 295
Query: 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 360
+KKL VPS+HAVI+GSDM AQ KFES+LR++V KKIQDRVHFVNKTLTVAPYLAAIDVL
Sbjct: 296 QKKLRVPSMHAVIVGSDMTAQPKFESQLRDFVRVKKIQDRVHFVNKTLTVAPYLAAIDVL 355
Query: 361 VQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420
VQNSQA GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG+TGLLHP GKEG+TPLAKNI
Sbjct: 356 VQNSQARGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGSTGLLHPTGKEGVTPLAKNI 415
Query: 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 468
V LAT+V RRLT+GK GYE+VKE F EHHMA RIA VLKEVL+K+KSH
Sbjct: 416 VTLATNVHRRLTLGKTGYEKVKETFLEHHMAHRIATVLKEVLQKAKSH 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222229|ref|NP_177675.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] gi|30793985|gb|AAP40442.1| unknown protein [Arabidopsis thaliana] gi|110739259|dbj|BAF01543.1| hypothetical protein [Arabidopsis thaliana] gi|332197597|gb|AEE35718.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/453 (75%), Positives = 390/453 (86%), Gaps = 3/453 (0%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVPRIATKSSPLSFMKS 74
KRW L +L+ LS+ST +R++ + C + ++K +S + +S+PL FMKS
Sbjct: 10 KRWALMVLLFLSVSTVCMILVRSSFETCSISSQFVEEKNGESSAAK---FQSNPLDFMKS 66
Query: 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
KLVLLVSHELSLSGGPLLLMELAFLLRGVG V WIT QKP E+DEV+YSLEHKM DRGV
Sbjct: 67 KLVLLVSHELSLSGGPLLLMELAFLLRGVGADVVWITNQKPLEDDEVVYSLEHKMLDRGV 126
Query: 135 QVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL 194
QVISAKGQ+ ++T+LKADLIVLNTAVAGKWLDAVLKE+V +VLP +LWWIHEMRGHYF
Sbjct: 127 QVISAKGQKAVDTSLKADLIVLNTAVAGKWLDAVLKENVVKVLPKILWWIHEMRGHYFNA 186
Query: 195 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR 254
D VKHLP VAGAMIDSH TA YWKNRT+ RL IKMP TYVVHLGNSKELMEVAED+VAKR
Sbjct: 187 DLVKHLPFVAGAMIDSHATAGYWKNRTQARLGIKMPKTYVVHLGNSKELMEVAEDSVAKR 246
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
VLREHVRESLGVRNEDLLF IINSVSRGKGQDLFL +F+ESLE IKEKKL+VP++HAV++
Sbjct: 247 VLREHVRESLGVRNEDLLFGIINSVSRGKGQDLFLRAFHESLERIKEKKLQVPTMHAVVV 306
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
GSDM+ QTKFE+ELRN+V +KK+++ VHFVNKTLTVAPY+AAIDVLVQNSQA GECFGRI
Sbjct: 307 GSDMSKQTKFETELRNFVREKKLENFVHFVNKTLTVAPYIAAIDVLVQNSQARGECFGRI 366
Query: 375 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 434
TIEAMAF+LPVLGTAAGGT EIVVNGTTGLLH GKEG+ PLAKNIVKLAT VE RL MG
Sbjct: 367 TIEAMAFKLPVLGTAAGGTMEIVVNGTTGLLHSAGKEGVIPLAKNIVKLATQVELRLRMG 426
Query: 435 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 467
K GYERVKE+F EHHM+ RIA VLKEVL+ +K+
Sbjct: 427 KNGYERVKEMFLEHHMSHRIASVLKEVLQHAKA 459
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839425|ref|XP_002887594.1| glycosyl transferase family 1 protein [Arabidopsis lyrata subsp. lyrata] gi|297333435|gb|EFH63853.1| glycosyl transferase family 1 protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/453 (75%), Positives = 389/453 (85%), Gaps = 8/453 (1%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVPRIATKSSPLSFMKS 74
KRW L +L+ LS+ST +R++ + C + D ++ QS +PL+FMKS
Sbjct: 10 KRWALMVLLFLSVSTVCVILVRSSFESCSVGGQFVDSSALRFQS--------NPLAFMKS 61
Query: 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
KLVLLVSHELSLSGGPLLLMELAFLLRGVG +V WIT QKP EEDEV+YSLEHKM DRGV
Sbjct: 62 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPLEEDEVVYSLEHKMLDRGV 121
Query: 135 QVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL 194
QVISAKGQ+ ++ ALKADLIVLNTAVAGKWLDAVLKE+V +VLP +LWWIHEMRGHYF
Sbjct: 122 QVISAKGQKAVDIALKADLIVLNTAVAGKWLDAVLKENVFKVLPKILWWIHEMRGHYFNP 181
Query: 195 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR 254
D VKHLP VAGAMIDSH TAEYW+NRT+ RL IKMP TYVVHLGNSK+LMEVAED+VAKR
Sbjct: 182 DLVKHLPFVAGAMIDSHATAEYWQNRTQARLGIKMPKTYVVHLGNSKDLMEVAEDSVAKR 241
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
VLREHVRESLGVRNEDLLF IINSVSRGKGQDLFL +F+ESLE+IKEKKL+VP++HAV++
Sbjct: 242 VLREHVRESLGVRNEDLLFGIINSVSRGKGQDLFLRAFHESLEIIKEKKLQVPTMHAVVV 301
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
GSDM+ QTKFE+ELRN+V +KK+++ VHFVNKTLTVAPY+AAIDVLVQNSQA GECFGRI
Sbjct: 302 GSDMSRQTKFETELRNFVQEKKLENFVHFVNKTLTVAPYIAAIDVLVQNSQARGECFGRI 361
Query: 375 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 434
TIEAMAF+LPVLGTAAGGT EIVVNGTTGLLH GKEG+ PLAKNIVKLA VE RLTMG
Sbjct: 362 TIEAMAFKLPVLGTAAGGTMEIVVNGTTGLLHSAGKEGVIPLAKNIVKLAMQVELRLTMG 421
Query: 435 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 467
GYERVKE+F EHHM+ RIA VLKEVL+ +K+
Sbjct: 422 NNGYERVKEMFLEHHMSHRIASVLKEVLQHAKA 454
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| TAIR|locus:2018392 | 463 | AT1G75420 [Arabidopsis thalian | 0.931 | 0.946 | 0.709 | 1.2e-163 | |
| TAIR|locus:2013089 | 479 | AT1G19710 [Arabidopsis thalian | 0.968 | 0.949 | 0.681 | 6.8e-159 | |
| TAIR|locus:2093925 | 697 | AT3G15940 [Arabidopsis thalian | 0.295 | 0.199 | 0.432 | 1.4e-36 | |
| TAIR|locus:2018144 | 670 | AT1G52420 [Arabidopsis thalian | 0.295 | 0.207 | 0.390 | 2.3e-34 | |
| TIGR_CMR|BA_1558 | 381 | BA_1558 "glycosyl transferase, | 0.240 | 0.296 | 0.358 | 1.1e-08 | |
| TIGR_CMR|CHY_1134 | 378 | CHY_1134 "glycosyl transferase | 0.242 | 0.301 | 0.347 | 4e-08 | |
| TIGR_CMR|CPS_4999 | 367 | CPS_4999 "glycosyl transferase | 0.380 | 0.487 | 0.279 | 8.2e-08 | |
| UNIPROTKB|Q47WI9 | 364 | CPS_4182 "Putative lipopolysac | 0.355 | 0.458 | 0.271 | 4.8e-07 | |
| TIGR_CMR|CPS_4182 | 364 | CPS_4182 "putative lipopolysac | 0.355 | 0.458 | 0.271 | 4.8e-07 | |
| TIGR_CMR|CHY_1814 | 369 | CHY_1814 "glycosyltransferase, | 0.291 | 0.371 | 0.303 | 1.8e-06 |
| TAIR|locus:2018392 AT1G75420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
Identities = 313/441 (70%), Positives = 356/441 (80%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVPRIATKSSPLSFMXX 74
KRW L +L+ LS+ST +R++ + C + ++K +S + +S+PL FM
Sbjct: 10 KRWALMVLLFLSVSTVCMILVRSSFETCSISSQFVEEKNGESSAAK---FQSNPLDFMKS 66
Query: 75 XXXXXXXXXXXXXGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
GGPLLLMELAFLLRGVG V WIT QKP E+DEV+YSLEHKM DRGV
Sbjct: 67 KLVLLVSHELSLSGGPLLLMELAFLLRGVGADVVWITNQKPLEDDEVVYSLEHKMLDRGV 126
Query: 135 QVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL 194
QVISAKGQ+ ++T+LKADLIVLNTAVAGKWLDAVLKE+V +VLP +LWWIHEMRGHYF
Sbjct: 127 QVISAKGQKAVDTSLKADLIVLNTAVAGKWLDAVLKENVVKVLPKILWWIHEMRGHYFNA 186
Query: 195 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR 254
D VKHLP VAGAMIDSH TA YWKNRT+ RL IKMP TYVVHLGNSKELMEVAED+VAKR
Sbjct: 187 DLVKHLPFVAGAMIDSHATAGYWKNRTQARLGIKMPKTYVVHLGNSKELMEVAEDSVAKR 246
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVII 314
VLREHVRESLGVRNEDLLF IINSVSRGKGQDLFL +F+ES VP++HAV++
Sbjct: 247 VLREHVRESLGVRNEDLLFGIINSVSRGKGQDLFLRAFHESLERIKEKKLQVPTMHAVVV 306
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
GSDM+ QTKFE+ELRN+V +KK+++ VHFVNKTLTVAPY+AAIDVLVQNSQA GECFGRI
Sbjct: 307 GSDMSKQTKFETELRNFVREKKLENFVHFVNKTLTVAPYIAAIDVLVQNSQARGECFGRI 366
Query: 375 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 434
TIEAMAF+LPVLGTAAGGT EIVVNGTTGLLH GKEG+ PLAKNIVKLAT VE RL MG
Sbjct: 367 TIEAMAFKLPVLGTAAGGTMEIVVNGTTGLLHSAGKEGVIPLAKNIVKLATQVELRLRMG 426
Query: 435 KRGYERVKEIFQEHHMAERIA 455
K GYERVKE+F EHHM+ RIA
Sbjct: 427 KNGYERVKEMFLEHHMSHRIA 447
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| TAIR|locus:2013089 AT1G19710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 312/458 (68%), Positives = 356/458 (77%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCD-RHLEVSDKKRVQSQ-S 58
M K S + W KRW L +L++LS+ST +R+ D C S +K S
Sbjct: 1 MAKPSTSMWATLQKKRWPLMILLVLSVSTVGMILVRSTFDSCSVSGKRCSREKEDNSDIK 60
Query: 59 VPRIATKSSPLSFMXXXXXXXXXXXXXXXGGPLLLMELAFLLRGVGTKVNWITIQKPSEE 118
+ ++ +PL FM GGPLLLMELAFLLRGV ++V WIT QKP EE
Sbjct: 61 IQSVSGSLNPLEFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVESEVVWITNQKPVEE 120
Query: 119 DEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLP 178
DEVI LEHKM DRGVQVISAK Q+ I+TALK+DL+VLNTAVAGKWLDAVLK++VP+VLP
Sbjct: 121 DEVIKVLEHKMLDRGVQVISAKSQKAIDTALKSDLVVLNTAVAGKWLDAVLKDNVPKVLP 180
Query: 179 NVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238
VLWWIHEMRGHYFK D VKHLP VAGAMIDSH TAEYWKNRT +RL IKMP TYVVHLG
Sbjct: 181 KVLWWIHEMRGHYFKPDLVKHLPFVAGAMIDSHATAEYWKNRTHDRLGIKMPKTYVVHLG 240
Query: 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXX 298
NSKELMEVAED+ AK VLRE VRESLGVRNED+LF IINSVSRGKGQDLFL +F+ES
Sbjct: 241 NSKELMEVAEDSFAKNVLREQVRESLGVRNEDILFGIINSVSRGKGQDLFLRAFHESLKV 300
Query: 299 XXXXXXX-VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 357
VP++HAV++GSDM+AQTKFE+ELRN+V + K+Q VHFVNKT+ VAPYLAAI
Sbjct: 301 IKETKKLEVPTMHAVVVGSDMSAQTKFETELRNFVQEMKLQKIVHFVNKTMKVAPYLAAI 360
Query: 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 417
DVLVQNSQA GECFGRITIEAMAF+LPVLGTAAGGT EIVVN TTGLLH GK+G+ PLA
Sbjct: 361 DVLVQNSQARGECFGRITIEAMAFKLPVLGTAAGGTMEIVVNRTTGLLHNTGKDGVLPLA 420
Query: 418 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455
KNIVKLAT+V+ R TMGK+GYERVKE+F EHHM+ RIA
Sbjct: 421 KNIVKLATNVKMRNTMGKKGYERVKEMFLEHHMSHRIA 458
|
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| TAIR|locus:2093925 AT3G15940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 61/141 (43%), Positives = 88/141 (62%)
Query: 314 IGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372
+GS N + + E+ +++ + + V + T VA +A DV V NSQ GE FG
Sbjct: 547 VGSKSN-KVAYVKEMLSFLSNNGNLSNSVLWTPATTRVASLYSAADVYVTNSQGVGETFG 605
Query: 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 432
R+TIEAMA+ LPVLGT AGGT EIV + TGLLHPVG+ G LA+N++ L + RL
Sbjct: 606 RVTIEAMAYGLPVLGTDAGGTKEIVEHNVTGLLHPVGRAGNKVLAQNLLFLLRNPSTRLQ 665
Query: 433 MGKRGYERVKEIFQEHHMAER 453
+G +G E V++++ + HM +R
Sbjct: 666 LGSQGREIVEKMYMKQHMYKR 686
|
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| TAIR|locus:2018144 AT1G52420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 55/141 (39%), Positives = 84/141 (59%)
Query: 314 IGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372
+GS N + + E+ +++ + V + T VA +A DV V NSQ GE FG
Sbjct: 520 VGSKSN-KVGYVKEMLSFLSNSGNLSKSVMWTPATTRVASLYSAADVYVTNSQGVGETFG 578
Query: 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 432
R+TIEAMA+ L V+GT AGGT E+V + TGLLH +G+ G LA N++ L + + RL
Sbjct: 579 RVTIEAMAYGLAVVGTDAGGTKEMVQHNMTGLLHSMGRSGNKELAHNLLYLLRNPDERLR 638
Query: 433 MGKRGYERVKEIFQEHHMAER 453
+G G + V++++ + HM +R
Sbjct: 639 LGSEGRKMVEKMYMKQHMYKR 659
|
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| TIGR_CMR|BA_1558 BA_1558 "glycosyl transferase, group 1 family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 42/117 (35%), Positives = 62/117 (52%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 396
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 252 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 309
Query: 397 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453
+ +G TG L VG T +A ++L E MG+R E V E F+ + +
Sbjct: 310 IQHGDTGYLCEVGDT--TGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQ 364
|
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| TIGR_CMR|CHY_1134 CHY_1134 "glycosyl transferase, group 1 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 330 NYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389
N V +K + ++V F+ K V+ L+ DVL+ S+ E FG + +EAMA ++PV+
Sbjct: 247 NEVQKKNLTNKVKFLGKMPKVSDVLSISDVLLITSET--ESFGLVALEAMAMEVPVVAYR 304
Query: 390 AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447
GG E+VV+G TG L V + A+ +VKL + G+ G R KE F +
Sbjct: 305 VGGLPEVVVDGQTGYL--VDYLDLEKAAEAVVKLLKEPWLKRDFGRWGRIRAKERFSK 360
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| TIGR_CMR|CPS_4999 CPS_4999 "glycosyl transferase, group 1 family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 54/193 (27%), Positives = 84/193 (43%)
Query: 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNA 320
R LG+ + L+ I + KG H ++ +P++H I G D A
Sbjct: 179 RADLGIPLDQLMLLSIGHLGEIKG-----HQ--DTLVALSKFTKTMPALHLYIAG-DGAA 230
Query: 321 QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380
Q K +L V + +I + V F+ + +L A D+ +Q S E FG + +EA A
Sbjct: 231 QEK--QKLTELVNKLQINENVTFLGQINNAFSWLEACDIFIQPSVE--EAFGLVFVEAGA 286
Query: 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440
PV+ T GG EI+V+ TGLL V + + L R G+ GY+R
Sbjct: 287 KAKPVIATTVGGIKEIIVSKETGLL--VLPSSPKAVEHALAILINSPPLRQQYGENGYKR 344
Query: 441 VKEIFQEHHMAER 453
+ E F +M +
Sbjct: 345 ITEHFSLTNMVNK 357
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| UNIPROTKB|Q47WI9 CPS_4182 "Putative lipopolysaccharide core biosynthesis mannosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 274 AIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNYVM 333
AI+ V + KG LF+ S + P AVI+GS ++ F +EL++ +
Sbjct: 185 AILGRVRKQKGVHLFVESCIDILKDR-------PDYTAVIVGSISSSNESFVNELQSKID 237
Query: 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 391
Q + +R+ F + + +++ ++V S+ E FG +EAM+ VL + AG
Sbjct: 238 QAGLTERIVFAGEQNFADIPKIFSSLSLVVALSE--NEGFGLTILEAMSSGAAVLASEAG 295
Query: 392 GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 451
E+V G G + P+ + + + + L E+ + MG+ G ERV E H+
Sbjct: 296 AWPEVVRQGVDGYVVPIND--LDAVTEKMSLLLADEEKLMQMGRDGRERVLE----HYSV 349
Query: 452 ERIA 455
ER A
Sbjct: 350 EREA 353
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| TIGR_CMR|CPS_4182 CPS_4182 "putative lipopolysaccharide core biosynthesis mannosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 274 AIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNYVM 333
AI+ V + KG LF+ S + P AVI+GS ++ F +EL++ +
Sbjct: 185 AILGRVRKQKGVHLFVESCIDILKDR-------PDYTAVIVGSISSSNESFVNELQSKID 237
Query: 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 391
Q + +R+ F + + +++ ++V S+ E FG +EAM+ VL + AG
Sbjct: 238 QAGLTERIVFAGEQNFADIPKIFSSLSLVVALSE--NEGFGLTILEAMSSGAAVLASEAG 295
Query: 392 GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 451
E+V G G + P+ + + + + L E+ + MG+ G ERV E H+
Sbjct: 296 AWPEVVRQGVDGYVVPIND--LDAVTEKMSLLLADEEKLMQMGRDGRERVLE----HYSV 349
Query: 452 ERIA 455
ER A
Sbjct: 350 EREA 353
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| TIGR_CMR|CHY_1814 CHY_1814 "glycosyltransferase, group 1 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 44/145 (30%), Positives = 71/145 (48%)
Query: 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368
V IIG D ++EL+ + I+ V F A + ID+ V S + G
Sbjct: 223 VFRAIIGGD----GPLKNELKELAKELGIESLVTFPGYIPNPAEFYREIDIFVLPSISEG 278
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428
+EAM+++L V+ T GG E++ +G GLL P K+ T L + + L +
Sbjct: 279 LPLS--LLEAMSWKLAVIATNVGGIPEVINSGENGLLVPP-KDA-TALTEALYTLIFNEN 334
Query: 429 RRLTMGKRGYERVKEIFQEHHMAER 453
RL++G+R Y ++E + HMA+R
Sbjct: 335 FRLSLGERAYITIREKYNVAHMAQR 359
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00570137 | hypothetical protein (481 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| cd03801 | 374 | cd03801, GT1_YqgM_like, This family is most closel | 2e-31 | |
| cd03808 | 359 | cd03808, GT1_cap1E_like, This family is most close | 3e-23 | |
| cd03819 | 355 | cd03819, GT1_WavL_like, This family is most closel | 6e-19 | |
| cd03798 | 377 | cd03798, GT1_wlbH_like, This family is most closel | 9e-19 | |
| COG0438 | 381 | COG0438, RfaG, Glycosyltransferase [Cell envelope | 3e-17 | |
| cd03811 | 353 | cd03811, GT1_WabH_like, This family is most closel | 2e-16 | |
| cd04962 | 371 | cd04962, GT1_like_5, This family is most closely r | 2e-15 | |
| cd03795 | 357 | cd03795, GT1_like_4, This family is most closely r | 2e-15 | |
| cd03807 | 365 | cd03807, GT1_WbnK_like, This family is most closel | 2e-15 | |
| TIGR03999 | 374 | TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosamin | 2e-15 | |
| pfam00534 | 158 | pfam00534, Glycos_transf_1, Glycosyl transferases | 3e-15 | |
| cd03800 | 398 | cd03800, GT1_Sucrose_synthase, This family is most | 3e-14 | |
| cd03820 | 348 | cd03820, GT1_amsD_like, This family is most closel | 4e-14 | |
| cd03822 | 366 | cd03822, GT1_ecORF704_like, This family is most cl | 3e-13 | |
| cd03823 | 359 | cd03823, GT1_ExpE7_like, This family is most close | 2e-12 | |
| cd03794 | 394 | cd03794, GT1_wbuB_like, This family is most closel | 5e-12 | |
| cd03799 | 355 | cd03799, GT1_amsK_like, This is a family of GT1 gl | 7e-12 | |
| cd03817 | 374 | cd03817, GT1_UGDG_like, This family is most closel | 8e-12 | |
| cd05844 | 367 | cd05844, GT1_like_7, Glycosyltransferases catalyze | 5e-11 | |
| cd04951 | 360 | cd04951, GT1_WbdM_like, This family is most closel | 7e-11 | |
| cd03825 | 365 | cd03825, GT1_wcfI_like, This family is most closel | 1e-10 | |
| cd03805 | 392 | cd03805, GT1_ALG2_like, This family is most closel | 1e-10 | |
| cd03814 | 364 | cd03814, GT1_like_2, This family is most closely r | 4e-10 | |
| TIGR02149 | 388 | TIGR02149, glgA_Coryne, glycogen synthase, Coryneb | 4e-10 | |
| TIGR03088 | 374 | TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH | 7e-10 | |
| cd01635 | 229 | cd01635, Glycosyltransferase_GTB_type, Glycosyltra | 1e-09 | |
| cd03813 | 475 | cd03813, GT1_like_3, This family is most closely r | 5e-08 | |
| PRK15484 | 380 | PRK15484, PRK15484, lipopolysaccharide 1,2-N-acety | 7e-08 | |
| TIGR04157 | 406 | TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG | 9e-08 | |
| TIGR03449 | 405 | TIGR03449, mycothiol_MshA, D-inositol-3-phosphate | 1e-06 | |
| cd03792 | 372 | cd03792, GT1_Trehalose_phosphorylase, Trehalose ph | 5e-06 | |
| cd03821 | 375 | cd03821, GT1_Bme6_like, This family is most closel | 7e-06 | |
| PLN02871 | 465 | PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoqu | 2e-05 | |
| cd03802 | 335 | cd03802, GT1_AviGT4_like, This family is most clos | 2e-04 | |
| cd04946 | 407 | cd04946, GT1_AmsK_like, This family is most closel | 3e-04 | |
| pfam13524 | 92 | pfam13524, Glyco_trans_1_2, Glycosyl transferases | 0.001 | |
| TIGR02470 | 784 | TIGR02470, sucr_synth, sucrose synthase | 0.001 | |
| PRK15490 | 578 | PRK15490, PRK15490, Vi polysaccharide biosynthesis | 0.001 | |
| cd03804 | 351 | cd03804, GT1_wbaZ_like, This family is most closel | 0.001 |
| >gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 98/398 (24%), Positives = 155/398 (38%), Gaps = 40/398 (10%)
Query: 77 VLLVSHE--LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE--------VIYSLE 126
+LLV+ E S+ G ++ELA L G +V +T DE V
Sbjct: 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPL 61
Query: 127 HKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKE-DVPRVL-PNVLWWI 184
++ + ++ A + + D++ + +A + +P VL + L +
Sbjct: 62 LRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG 121
Query: 185 HEMRGHYFKLDYVKHLPLVAGAMIDSHVT-AEYWKNRTRERLRIKMPDTYVVHLGNSKEL 243
L + L A D + +E + RE + V+ G
Sbjct: 122 RPGNELGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNG----- 176
Query: 244 MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303
++ A R R LG+ ++ + + + KG DL L E+L +++
Sbjct: 177 VDTERFRPAPR----AARRRLGIPEDEPVILFVGRLVPRKGVDLLL----EALAKLRK-- 226
Query: 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLV 361
E P V VI+G EL + + DRV F+ + AA DV V
Sbjct: 227 -EYPDVRLVIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFV 280
Query: 362 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421
S E FG + +EAMA LPV+ + GG E+V +G TGLL P G LA+ I+
Sbjct: 281 LPSLY--EGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDP--EALAEAIL 336
Query: 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459
+L E R +G+ ERV E F +A R V
Sbjct: 337 RLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. Length = 374 |
| >gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRV 341
KG D L E+ ++K K P+V +++G D E+ ++ RV
Sbjct: 201 KGIDELL----EAARILKAKG---PNVRLLLVGDGDEENPAA-ILEIEKLG----LEGRV 248
Query: 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 401
F+ V LAA DV V S + E R+ +EAMA PV+ T G E V++G
Sbjct: 249 EFLGFRDDVPELLAAADVFVLPS--YREGLPRVLLEAMAMGRPVIATDVPGCREAVIDGV 306
Query: 402 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454
G L P G LA I +L E R MG+ +R +E F E + +++
Sbjct: 307 NGFLVPPGDA--EALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKL 357
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. Length = 359 |
| >gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 252 AKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311
+R+L + + + ++R KGQ++F+ E+L +K+ + P VH
Sbjct: 169 PERILAL--AREWPLPKGKPVILLPGRLTRWKGQEVFI----EALARLKK---DDPDVHL 219
Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF 371
+I+G + + +EL + + +QDRV FV + A D++V S E F
Sbjct: 220 LIVGDA-QGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE-PEAF 277
Query: 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 431
GR +EA A PV+ + GG E V G TGLL P G A + + E R
Sbjct: 278 GRTAVEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLL-PEGRA 336
Query: 432 TMGKRGYERVKEIF 445
M + V+ +F
Sbjct: 337 KMFAKARMCVETLF 350
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. Length = 355 |
| >gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 9e-19
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 24/183 (13%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG D + E+L + +K+ P VH VI+G L + ++DRV
Sbjct: 215 KGIDYLI----EALARLLKKR---PDVHLVIVGDG-----PLREALEALAAELGLEDRVT 262
Query: 343 FV----NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV 398
F+ ++ V Y AA DV V S E FG + +EAMA LPV+ T GG EI+
Sbjct: 263 FLGAVPHEE--VPAYYAAADVFVLPS--LREGFGLVLLEAMACGLPVVATDVGGIPEIIT 318
Query: 399 NGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458
+G GLL P G LA+ I++L R +G+ RV E F ++AER+ +
Sbjct: 319 DGENGLLVPPG--DPEALAEAILRLLADPWLR--LGRAARRRVAERFSWENVAERLLELY 374
Query: 459 KEV 461
+EV
Sbjct: 375 REV 377
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. Length = 377 |
| >gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 82.7 bits (203), Expect = 3e-17
Identities = 86/411 (20%), Positives = 147/411 (35%), Gaps = 47/411 (11%)
Query: 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE----- 126
MK ++++ + G ++ELA LR +G + I E I L
Sbjct: 1 MKILILIIYPPP-RVGGIERYVLELAKALRLLGRGHEVLVIAPEKLEGLGIEVLRLPSVS 59
Query: 127 HKMWDRGVQVISAKGQETINTALKADLIVLNTA----VAGKWLDAVLKEDVPRVL----- 177
+ ++ + + L D+I ++ L + +P V+
Sbjct: 60 LPLLIVRLRPALLRLLLLLKRLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGL 119
Query: 178 -PNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236
P +L + +K L + D + E L + V+
Sbjct: 120 IPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKELLEALGVP-NKIVVIP 178
Query: 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296
G E A + + + + KG DL +
Sbjct: 179 NGIDTEKFAPARIGLLPE-------------GGKFVVLYVGRLDPEKGLDLLI------- 218
Query: 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN--KTLTVAPYL 354
E + K P + VI+G + EL + ++D V F+ +A L
Sbjct: 219 EAAAKLKKRGPDIKLVIVGD----GPERREELEKLAKKLGLEDNVKFLGYVPDEELAELL 274
Query: 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414
A+ DV V S E FG + +EAMA PV+ + GG E+V +G TGLL V +
Sbjct: 275 ASADVFVLPSL--SEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLL--VPPGDVE 330
Query: 415 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465
LA + +L E R +G+ ERV+E F +AE++ + +E+L +
Sbjct: 331 ELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELLAEK 381
|
Length = 381 |
| >gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 51/169 (30%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Query: 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 339
S KG D + +F + E P VI+G EL + + D
Sbjct: 199 SPQKGFDTLIRAFALL-------RKEGPDARLVILGDG-----PLREELEALAKELGLAD 246
Query: 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 399
RVHF+ PYL A D+ V +S+ E F + +EAMA PV+ T G EI+ +
Sbjct: 247 RVHFLGFQSNPYPYLKAADLFVLSSRY--EGFPNVLLEAMALGTPVVATDCPGPREILED 304
Query: 400 GTTGLLHPVGKEGI-TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447
G GLL PVG E A ++ L E R + ERV + +
Sbjct: 305 GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYSK 353
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. Length = 353 |
| >gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 325 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384
S + +QD V F+ K V L+ D+ + S+ E FG +EAMA +P
Sbjct: 239 RSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEK--ESFGLAALEAMACGVP 296
Query: 385 VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444
V+ + AGG E+V +G TG L VG + +A+ + L E + R E
Sbjct: 297 VVASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAER 354
Query: 445 FQEHHMAERI 454
F +ERI
Sbjct: 355 FD----SERI 360
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes. Length = 371 |
| >gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 305 EVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLV 361
+P VI+G + E+EL + DRV F+ + A LAA DV V
Sbjct: 215 ALPDAPLVIVGEGPL------EAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFV 268
Query: 362 QNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420
S E FG + +EAMAF PV+ T G + + ++G TGL+ P G LA+ I
Sbjct: 269 FPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPA--ALAEAI 326
Query: 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMA 451
+L E R +G+ ER +E F M
Sbjct: 327 RRLLEDPELRERLGEAARERAEEEFTADRMV 357
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes. Length = 357 |
| >gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R +RE LG+ + L I+ + K L + L+ +K P+ +++G
Sbjct: 180 RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAA----ALLLKK---FPNARLLLVGD 232
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376
+ + E + ++D+V + + V L A+DV V +S + E F + +
Sbjct: 233 GPD-RANLELLALK---ELGLEDKVILLGERSDVPALLNALDVFVLSSLS--EGFPNVLL 286
Query: 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVERRLTMGK 435
EAMA LPV+ T G E+V + TG L P G E LA+ I L R +G+
Sbjct: 287 EAMACGLPVVATDVGDNAELVGD--TGFLVPPGDPEA---LAEAIEALLADPALRQALGE 341
Query: 436 RGYERVKEIFQEHHMAER 453
ER++E F M E
Sbjct: 342 AARERIEENFSIEAMVEA 359
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. Length = 365 |
| >gnl|CDD|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 326 SELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385
S V + + DRV F+ K VA L+ D+ + S+ E FG +EAMA +PV
Sbjct: 242 SPAEQLVRELGLTDRVLFLGKQDDVAELLSISDLFLLPSEK--ESFGLAALEAMACGVPV 299
Query: 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 445
+ + AGG E+V +G TG L VG + +A+ + L E ER KE F
Sbjct: 300 IASNAGGIPEVVEHGVTGFLCDVGD--VETMAEYAISLLEDEELLQRFSAAARERAKERF 357
Query: 446 QEHHMAERIAVVLKEVL 462
+ + + + +L
Sbjct: 358 DSEKIVPQYEALYRRLL 374
|
Members of this protein family are BshA, a glycosyltransferase required for bacillithiol biosynthesis. This enzyme combines UDP-GlcNAc and L-malate to form N-acetyl-alpha-D-glucosaminyl L-malate synthase. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 374 |
| >gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-15
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 275 IINSVSRG---KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY 331
II V R KG DL L E+ L+KE+ P++ VI+G + E +L+
Sbjct: 4 IILFVGRLVPEKGLDLLL----EAFALLKEQH---PNLKLVIVGDG-----EEEKKLKKL 51
Query: 332 VMQKKIQDRVHFVN--KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389
++ ++D V FV + D+ V S+ E FG + +EAMA +PV+ T
Sbjct: 52 ALKLGLEDNVIFVGFVPDEDLIELYRIADLFVLPSRY--EGFGLVLLEAMAAGVPVIATD 109
Query: 390 AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440
GG EIV +G TGLL G LA+ I KL E R +G+ +R
Sbjct: 110 VGGPAEIVKDGETGLLVDPGD--AEALAEAIEKLLKDEELRERLGENARKR 158
|
Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. Length = 158 |
| >gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 56/179 (31%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 275 IINSVSR---GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG--SDMNAQTKFESELR 329
I +V R KG D + ++ E EL + L VI+G D E ELR
Sbjct: 222 RILAVGRLDPRKGIDTLIRAYAELPELRERANL-------VIVGGPRDDILAMD-EEELR 273
Query: 330 NYVMQKKIQDRVHFVNKTLT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386
+ + DRV F ++ + A DV V A E FG +EAMA LPV+
Sbjct: 274 ELARELGVIDRVDFP-GRVSREDLPALYRAADVFVN--PALYEPFGLTALEAMACGLPVV 330
Query: 387 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 445
TA GG +IVV+G TGLL LA + +L T R + + G R + +
Sbjct: 331 ATAVGGPRDIVVDGVTGLLVDPRDPEA--LAAALRRLLTDPALRRRLSRAGLRRARARY 387
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. Length = 398 |
| >gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 17/162 (10%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG DL + ++ + + + KL I+G L + + ++DRV
Sbjct: 191 KGFDLLIEAWAKIAKKHPDWKL-------RIVGDG-----PEREALEALIKELGLEDRVI 238
Query: 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGT 401
+ T + Y A + V S+ E F + +EAMAF LPV+ G +EI+ +G
Sbjct: 239 LLGFTKNIEEYYAKASIFVLTSRF--EGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGV 296
Query: 402 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443
GLL P G LA+ +++L E R MG E +
Sbjct: 297 NGLLVPNGDVEA--LAEALLRLMEDEELRKRMGANARESAER 336
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. Length = 348 |
| >gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 50/262 (19%)
Query: 224 RLRIKMPDTYVVHLGN-SKELMEVA-EDNVAK---------RVLREHVRESLGVRNEDLL 272
RL ++ D +V + L+ A + +A E ++ G+ +L
Sbjct: 129 RLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESLKALGGLDGRPVL 188
Query: 273 --FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330
F ++ KG +L L E+L L+ K P V ++ G ++ E
Sbjct: 189 LTFGLL---RPYKGLELLL----EALPLLVAK---HPDVRLLVAGETHPDLERYRGEAYA 238
Query: 331 YVMQKKIQDRVHFVNKTLT---VAPYLAAIDVLV------QNSQ----AWGECFGRITIE 377
+ + DRV F+N+ L + +A DV+V +Q A+
Sbjct: 239 LAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAY---------- 288
Query: 378 AMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437
A+ F PV+ T G E V++G TGLL P G LA+ I +L E + R
Sbjct: 289 AIGFGKPVISTPVGHAEE-VLDGGTGLLVPPGDP--AALAEAIRRLLADPELAQALRARA 345
Query: 438 YERVKEIFQEHHMAERIAVVLK 459
E + +AER +L
Sbjct: 346 REYARA-MSWERVAERYLRLLA 366
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. Length = 366 |
| >gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG DL L E+ + + +E+ VI+G+ + + + + RV
Sbjct: 204 KGVDLLL----EAFKRLPRGDIEL-----VIVGNGLELEEESYEL--------EGDPRVE 246
Query: 343 FV--NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG 400
F+ + + A IDVLV S W E F + EA+A +PV+ + GG E+V +G
Sbjct: 247 FLGAYPQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVIASDIGGMAELVRDG 305
Query: 401 TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440
GLL P G LA + +L + +
Sbjct: 306 VNGLLFPPG--DAEDLAAALERLIDDPDLLERLRAGIEPP 343
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). Length = 359 |
| >gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDR 340
G+ Q L + E+ L+K++ P + +I+G + EL+ + D
Sbjct: 230 GRAQGL--DTLLEAAALLKDR----PDIRFLIVGDGPE------KEELKELAKALGL-DN 276
Query: 341 VHF---VNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT----IEAMAFQLPVLGTAAGGT 393
V F V K + LAA DV + G F ++ E MA PVL + G +
Sbjct: 277 VTFLGRVPKE-ELPELLAAADVGL-VPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES 334
Query: 394 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453
E+V GL+ P G LA I++L E R MG+ G V+E F +AER
Sbjct: 335 AELVEEAGAGLVVPPGD--PEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAER 392
Query: 454 IA 455
+
Sbjct: 393 LL 394
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. Length = 394 |
| >gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 7e-12
Identities = 55/178 (30%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG D L E+L L+K++ ++ I+G EL + + ++DRV
Sbjct: 192 KGLDYLL----EALALLKDRGIDF---RLDIVGDG-----PLRDELEALIAELGLEDRVT 239
Query: 343 F---VNKTLTVAPYLAAIDVLVQNSQAWG----ECFGRITIEAMAFQLPVLGTAAGGTTE 395
++ V L A D+ V S E + +EAMA LPV+ T G E
Sbjct: 240 LLGAKSQE-EVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE 298
Query: 396 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453
+V +G TGLL P G LA I +L E R MG+ G RV+E F A R
Sbjct: 299 LVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. Length = 355 |
| >gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 253 KRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312
+ V + R LG+ ++ + + +++ K D + +F L+ E P V V
Sbjct: 185 EPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLK-------EEPDVKLV 237
Query: 313 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-----NKTLTVAPYLAAIDVLVQNSQAW 367
I+G D EL + + DRV F + + Y A D+ V S
Sbjct: 238 IVG-DGPE----REELEELARELGLADRVIFTGFVPREE---LPDYYKAADLFVFASTT- 288
Query: 368 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427
E G + +EAMA LPV+ A G ++V +G G L P G E LA+ +++L
Sbjct: 289 -ETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDE---ALAEALLRLLQDP 344
Query: 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 461
E R + K E + + A+++ + +EV
Sbjct: 345 ELRRRLSKNAEESAE----KFSFAKKVEKLYEEV 374
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. Length = 374 |
| >gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363
VP V VIIG + L + RV F+ V + + +Q
Sbjct: 217 VPEVRLVIIG-----DGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQP 271
Query: 364 SQ--AWGEC--FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEG-ITPLAK 418
S G+ + +EA A +PV+ T GG E V +G TGLL P EG + LA
Sbjct: 272 SVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVP---EGDVAALAA 328
Query: 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455
+ +L + R MG G RV+E F ++
Sbjct: 329 ALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 367 |
| >gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
R +R +LGV+N+ + + + K L +F + L + KL +I
Sbjct: 173 ARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKL-------LIA 225
Query: 315 GSDMNAQTKFESELRNYVMQK----KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370
G + LR + + + +RV + +A Y A D+ V +S AW E
Sbjct: 226 G---------DGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSS-AW-EG 274
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VER 429
FG + EAMA +LPV+ T AGG E+V G +GL+ P+ LA I ++ E
Sbjct: 275 FGLVVAEAMACELPVVATDAGGVREVV--GDSGLIVPISD--PEALANKIDEILKMSGEE 330
Query: 430 RLTMGKR 436
R +G R
Sbjct: 331 RDIIGAR 337
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria. Length = 360 |
| >gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 29/203 (14%)
Query: 257 REHVRESLGVRNED---LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI 313
+ R+ LG+ D +LF + KG D + E+L+ + E+ + + V+
Sbjct: 178 KREARKRLGL-PADKKIILFGAVGGTDPRKGFDELI----EALKRLAERWKD--DIELVV 230
Query: 314 IGSDMNAQTKFESELRNYVMQKKIQDRVHF---VNKTLTVAPYLAAIDVLVQNSQAWGEC 370
G+ + + + VH+ +N ++A +A DV V S E
Sbjct: 231 FGAS-DPEIPPDLPFP-----------VHYLGSLNDDESLALIYSAADVFVVPSLQ--EN 276
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
F IEA+A PV+ GG +IV +G TG L G LA+ I L + R
Sbjct: 277 FPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDER 334
Query: 431 LTMGKRGYERVKEIFQEHHMAER 453
+G+ E + F A+R
Sbjct: 335 EELGEAARELAENEFDSRVQAKR 357
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. Length = 365 |
| >gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-----NAQTKFESELRN 330
IN R K L + +F ++K+K E +V VI G N + E EL+
Sbjct: 217 INRFERKKNIALAIEAF----AILKDKLAEFKNVRLVIAGGYDPRVAENVEY-LE-ELQR 270
Query: 331 YVMQKK-IQDRVHF---VNKTLTVAPYLAAIDVLV--QNSQAWGECFGRITIEAMAFQLP 384
+ ++D+V F ++ + +A +L N E FG + +EAM P
Sbjct: 271 LAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSN-----EHFGIVPLEAMYAGKP 325
Query: 385 VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444
V+ +GG E VV+G TG L E A+ ++KLA + MG G +RVKE
Sbjct: 326 VIACNSGGPLETVVDGETGFLCEPTPEE---FAEAMLKLANDPDLADRMGAAGRKRVKEK 382
Query: 445 FQEHHMAERI 454
F AER+
Sbjct: 383 FSTEAFAERL 392
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. Length = 392 |
| >gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV 408
+A A+ DV V S+ E FG + +EAMA LPV+ AGG +IV +G GLL
Sbjct: 259 ELAAAYASADVFVFPSRT--ETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEP 316
Query: 409 GKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441
G A + L E R M R
Sbjct: 317 GDAE--AFAAALAALLADPELRRRMAARARAEA 347
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes. Length = 364 |
| >gnl|CDD|233748 TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 341 VHFVNKTLT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV 397
+ ++NK L + L+ +V V S E G + +EAMA PV+ +A GG E+V
Sbjct: 262 IIWINKMLPKEELVELLSNAEVFVCPSIY--EPLGIVNLEAMACGTPVVASATGGIPEVV 319
Query: 398 VNGTTGLLHPVGKEGITP----LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453
V+G TG L P LAK I L E MG G +R +E F +A++
Sbjct: 320 VDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKK 379
Query: 454 IAVVLKEVL 462
+ ++VL
Sbjct: 380 TVEMYRKVL 388
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 388 |
| >gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG 409
V + A+D+ V S A E +EAMA LPV+ TA GG E+V +G TG L P G
Sbjct: 266 VPALMQALDLFVLPSLA--EGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPG 323
Query: 410 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462
LA+ + + R G G R ++ F + M A + ++L
Sbjct: 324 DA--VALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. Length = 374 |
| >gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
L ++ V N + +L + D +F + ++ KG D + +F
Sbjct: 70 AARLLGIPLVLTVHGVNRSLLEGVPLSLLALSIGLADKVF--VGRLAPEKGLDDLIEAF- 126
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV---NKTLTV 350
K P + VI G + E + DRV F+ + +
Sbjct: 127 ------ALLKERGPDLKLVIAGDGPEREYLEELLAALL-----LLDRVIFLGGLDPEELL 175
Query: 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405
A LAA DV V S E FG + +EAMA LPV+ T GG EIV +G TGLL
Sbjct: 176 ALLLAAADVFVLPS--LREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLL 228
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 229 |
| >gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 25/180 (13%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
K F+ + + ++P +IG E E R V ++D V
Sbjct: 306 KDIKTFIRAAAIVRK-------KIPDAEGWVIGPTDEDPEYAE-ECRELVESLGLEDNVK 357
Query: 343 F---VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 399
F N V YL +DVLV S + E + +EAMA +PV+ T G E++
Sbjct: 358 FTGFQN----VKEYLPKLDVLVLTSIS--EGQPLVILEAMAAGIPVVATDVGSCRELIEG 411
Query: 400 GTTGLLHPVGKEGITP------LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453
L P G + P LA+ I++L E R MG+ G +RV+ + M +
Sbjct: 412 ADDEALGPAG--EVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDS 469
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes. Length = 475 |
| >gnl|CDD|185381 PRK15484, PRK15484, lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 45/255 (17%)
Query: 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED- 270
V +++ K ER +P+ + + N L + + ++R+ L + ++
Sbjct: 145 VPSQFLKKFYEER----LPNADISIVPNGFCLETYQSNP------QPNLRQQLNISPDET 194
Query: 271 -LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR 329
LL+A +S KG L + +F + KL V++G + ++ +
Sbjct: 195 VLLYA--GRISPDKGILLLMQAFEKLATAHSNLKL-------VVVGDPTASSKGEKAAYQ 245
Query: 330 NYVMQ--KKIQDRVHFVNKTLTVAP-----YLAAIDVLVQNSQAWGECFGRITIEAMAFQ 382
V++ K+I DR + P Y D++V SQ E F + +EAMA
Sbjct: 246 KKVLEAAKRIGDRCIMLG---GQPPEKMHNYYPLADLVVVPSQ-VEEAFCMVAVEAMAAG 301
Query: 383 LPVLGTAAGGTTEIVVNGTTG--LLHPVGKEGITPLAKNIVKLATHVE--------RRLT 432
PVL + GG TE V+ G TG L P+ + I +I + E +
Sbjct: 302 KPVLASTKGGITEFVLEGITGYHLAEPMTSDSI---ISDINRTLADPELTQIAEQAKDFV 358
Query: 433 MGKRGYERVKEIFQE 447
K +E V + F+E
Sbjct: 359 FSKYSWEGVTQRFEE 373
|
Length = 380 |
| >gnl|CDD|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales peptide system | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 32/218 (14%)
Query: 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307
E V R+ +R+ LG ++ + + + KG D + +F ++K+ P
Sbjct: 205 EAIYLSEVERKKLRKKLGFSEDEKIILFVGRLDEIKGVDYLIEAF---KIVLKKD----P 257
Query: 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF---VNKTLTVAPYLAAIDVLVQNS 364
+ VI+G D + + KKI ++ F ++K Y A DV V S
Sbjct: 258 NCRLVIVG-DGDYSRYLQ-------ECKKIWSKITFTGKLDKEKLYELYQIA-DVGVLPS 308
Query: 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEG------ITPLAK 418
E + IE M LP++GT + G +E++ +G G P+ + L +
Sbjct: 309 FH--EQCSYVAIEMMMHGLPLIGTTSTGLSEMIEDGLNGYKIPIKEYRDYVELDKKELVQ 366
Query: 419 NIVKLATHVERRLTMGKRGYERVKE-----IFQEHHMA 451
++KL + + MGK R E + +E+ +
Sbjct: 367 KLLKLLSSSDEAKQMGKNARRRYLEKYSLEVMRENMKS 404
|
Members of this protein family are predicted glycosyltransferases that occur in conserved gene neighborhoods in various members of the Bacteroidales. These neighborhoods feature a radical SAM enzyme predicted to act in peptide modification (family TIGR04148), peptides from family TIGR04149 with a characteristic GG cleavage motif, and several other proteins. Length = 406 |
| >gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 17/188 (9%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R R LG+ + + A + + K D+ L + E L+ ++ L V ++G
Sbjct: 206 RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVI-----VVGG 260
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHF---VNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373
+ L + I DRV F V Y AA DV+ S + E FG
Sbjct: 261 PSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAA-DVVAVPS--YNESFGL 317
Query: 374 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATHVERRL 431
+ +EA A PV+ GG V +G TGLL +G P A + +L R+
Sbjct: 318 VAMEAQACGTPVVAARVGGLPVAVADGETGLL----VDGHDPADWADALARLLDDPRTRI 373
Query: 432 TMGKRGYE 439
MG E
Sbjct: 374 RMGAAAVE 381
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. Length = 405 |
| >gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 18/158 (11%)
Query: 296 LELIKEKKLEVPSVHAVIIGS----DMNAQTKFESELRNYVMQKKIQDRVHFVN----KT 347
++ ++ K VP V++GS D +E E+ Y + +H +
Sbjct: 209 IDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYE-EVLEY---AEGDPDIHVLTLPPVSD 264
Query: 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP 407
L V A V++Q S E FG EA+ PV+ GG + +G TG L
Sbjct: 265 LEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVD 322
Query: 408 VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 445
+E A I+ L E R MG E V+E F
Sbjct: 323 TVEE----AAVRILYLLRDPELRRKMGANAREHVRENF 356
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. Length = 372 |
| >gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG DL + +F + E P H VI G D + + +EL+ ++DRV
Sbjct: 216 KGLDLLIEAF----AKLAE---RFPDWHLVIAGPD---EGGYRAELKQIAAALGLEDRVT 265
Query: 343 F---VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 399
F + A A D+ V S + E FG + EA+A PV+ T E++
Sbjct: 266 FTGMLYGEDKAAALADA-DLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY 322
Query: 400 GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454
G V + + LA + + +R MG+ G V+E F +A+++
Sbjct: 323 GCGW----VVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQL 373
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. Length = 375 |
| >gnl|CDD|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---GTTGLLHPVGKE 411
A+ DV V S++ E G + +EAMA +PV+ AGG +I+ G TG L+ G
Sbjct: 330 ASGDVFVMPSES--ETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGD- 386
Query: 412 GITPLAKNIVKLATHVERRLTMGKRGYERVKE 443
+ + + L E R MG E V++
Sbjct: 387 -VDDCVEKLETLLADPELRERMGAAAREEVEK 417
|
Length = 465 |
| >gnl|CDD|99975 cd03802, GT1_AviGT4_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 367 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426
W E FG + IEAMA PV+ G E+V +G TG L ++ +LA
Sbjct: 253 WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGF-----------LVDSVEELAAA 301
Query: 427 VERRLTMGKRGYERVKEIFQEHHMAERIA 455
V R + + + + A R+
Sbjct: 302 VARADRLDRA---ACRRRAERRFSAARMV 327
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. Length = 335 |
| >gnl|CDD|99997 cd04946, GT1_AmsK_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATHVERRLTMG 434
EAM+F +PV+ T GGT EIV NG GLL + TP L ++ K + E TM
Sbjct: 329 EAMSFGIPVIATNVGGTPEIVDNGGNGLLLS---KDPTPNELVSSLSKFIDNEEEYQTMR 385
Query: 435 KRGYERVKEIF 445
++ E+ +E F
Sbjct: 386 EKAREKWEENF 396
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. Length = 407 |
| >gnl|CDD|222197 pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 375 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 434
EA A P+L G E+ G +L+ +E LA+ + L E R +
Sbjct: 15 VFEAAACGAPLLTDRTPGLEELFEPGEEIVLYRDPEE----LAEKLRYLLADPEERRAIA 70
Query: 435 KRGYERVKEIFQEHHMAERIA 455
G ERV EH R
Sbjct: 71 AAGRERVL---AEHTYEHRAE 88
|
Length = 92 |
| >gnl|CDD|233881 TIGR02470, sucr_synth, sucrose synthase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL 404
E FG +EAM LP T GG EI+ +G +G
Sbjct: 654 EAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGF 689
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 784 |
| >gnl|CDD|185387 PRK15490, PRK15490, Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 307 PSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365
P+ V++G D+ A+ + +E Q I +R+ FV + V +L ++V + S+
Sbjct: 428 PATRFVLVGDGDLRAEAQKRAE------QLGILERILFVGASRDVGYWLQKMNVFILFSR 481
Query: 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405
G + IEA +PV+ T AGG+ E + G +G +
Sbjct: 482 YEG--LPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFI 519
|
Length = 578 |
| >gnl|CDD|99976 cd03804, GT1_wbaZ_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405
E FG + +EAMA PV+ GG E V++G TG+L
Sbjct: 271 EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGIL 307
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. Length = 351 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 100.0 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 100.0 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 100.0 | |
| PLN02316 | 1036 | synthase/transferase | 100.0 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 100.0 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 100.0 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 100.0 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 100.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 100.0 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 100.0 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 100.0 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 100.0 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 100.0 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 100.0 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 100.0 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 100.0 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 100.0 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 100.0 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 100.0 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 100.0 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 100.0 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 100.0 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 100.0 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 100.0 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 100.0 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 100.0 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 100.0 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 100.0 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 100.0 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 100.0 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 100.0 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 100.0 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 100.0 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 100.0 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 100.0 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 100.0 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 100.0 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 100.0 | |
| PLN00142 | 815 | sucrose synthase | 100.0 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 100.0 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 100.0 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 100.0 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 100.0 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 100.0 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 100.0 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 100.0 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 100.0 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 100.0 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 100.0 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 100.0 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 100.0 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 100.0 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 100.0 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 100.0 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 100.0 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 100.0 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 100.0 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 100.0 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 100.0 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 100.0 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 100.0 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 100.0 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 100.0 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 99.98 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 99.97 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.97 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 99.97 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 99.96 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 99.96 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 99.96 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 99.96 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 99.96 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.96 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.95 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 99.95 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 99.95 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 99.94 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 99.93 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 99.92 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 99.91 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 99.9 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 99.9 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 99.89 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 99.88 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 99.87 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 99.86 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 99.86 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 99.83 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 99.79 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 99.79 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 99.79 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 99.77 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 99.76 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 99.69 | |
| PF00982 | 474 | Glyco_transf_20: Glycosyltransferase family 20; In | 99.61 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 99.61 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 99.59 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 99.58 | |
| PRK10117 | 474 | trehalose-6-phosphate synthase; Provisional | 99.57 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 99.55 | |
| PLN02205 | 854 | alpha,alpha-trehalose-phosphate synthase [UDP-form | 99.47 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 99.46 | |
| PF13439 | 177 | Glyco_transf_4: Glycosyltransferase Family 4; PDB: | 99.45 | |
| COG0380 | 486 | OtsA Trehalose-6-phosphate synthase [Carbohydrate | 99.43 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 99.41 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 99.38 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 99.37 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 99.3 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 99.29 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 99.27 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 99.24 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 99.23 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 99.21 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 99.15 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 99.13 | |
| COG0381 | 383 | WecB UDP-N-acetylglucosamine 2-epimerase [Cell env | 99.06 | |
| PF13579 | 160 | Glyco_trans_4_4: Glycosyl transferase 4-like domai | 98.97 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 98.97 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 98.8 | |
| PF04464 | 369 | Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate | 98.7 | |
| PF09314 | 185 | DUF1972: Domain of unknown function (DUF1972); Int | 98.63 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 98.62 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 98.62 | |
| COG3980 | 318 | spsG Spore coat polysaccharide biosynthesis protei | 98.59 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 98.58 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 98.57 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 98.53 | |
| COG4641 | 373 | Uncharacterized protein conserved in bacteria [Fun | 98.51 | |
| COG1817 | 346 | Uncharacterized protein conserved in archaea [Func | 98.42 | |
| PF07429 | 360 | Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc | 98.38 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.27 | |
| COG4671 | 400 | Predicted glycosyl transferase [General function p | 98.27 | |
| KOG3742 | 692 | consensus Glycogen synthase [Carbohydrate transpor | 98.26 | |
| PF13477 | 139 | Glyco_trans_4_2: Glycosyl transferase 4-like | 98.25 | |
| PRK10017 | 426 | colanic acid biosynthesis protein; Provisional | 98.17 | |
| COG0058 | 750 | GlgP Glucan phosphorylase [Carbohydrate transport | 97.99 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 97.94 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.93 | |
| PF08323 | 245 | Glyco_transf_5: Starch synthase catalytic domain; | 97.85 | |
| PRK14986 | 815 | glycogen phosphorylase; Provisional | 97.66 | |
| PF00343 | 713 | Phosphorylase: Carbohydrate phosphorylase; InterPr | 97.57 | |
| TIGR02093 | 794 | P_ylase glycogen/starch/alpha-glucan phosphorylase | 97.55 | |
| cd04300 | 797 | GT1_Glycogen_Phosphorylase This is a family of oli | 97.54 | |
| PRK14985 | 798 | maltodextrin phosphorylase; Provisional | 97.32 | |
| KOG1050 | 732 | consensus Trehalose-6-phosphate synthase component | 97.12 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 97.04 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 96.98 | |
| COG0859 | 334 | RfaF ADP-heptose:LPS heptosyltransferase [Cell env | 96.96 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 96.96 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 96.73 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 96.56 | |
| COG3660 | 329 | Predicted nucleoside-diphosphate-sugar epimerase [ | 96.56 | |
| PF11440 | 355 | AGT: DNA alpha-glucosyltransferase; InterPro: IPR0 | 96.55 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 96.52 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 96.5 | |
| PLN02208 | 442 | glycosyltransferase family protein | 96.45 | |
| TIGR03609 | 298 | S_layer_CsaB polysaccharide pyruvyl transferase Cs | 96.26 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 96.22 | |
| PLN02764 | 453 | glycosyltransferase family protein | 96.21 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 96.07 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 95.96 | |
| PLN00414 | 446 | glycosyltransferase family protein | 95.88 | |
| PF15024 | 559 | Glyco_transf_18: Glycosyltransferase family 18 | 95.86 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 95.83 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 95.63 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 95.56 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 95.56 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 95.52 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 95.48 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 95.23 | |
| PF05159 | 269 | Capsule_synth: Capsule polysaccharide biosynthesis | 95.01 | |
| TIGR02195 | 334 | heptsyl_trn_II lipopolysaccharide heptosyltransfer | 94.79 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 94.46 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 94.22 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 94.2 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 94.03 | |
| PF12000 | 171 | Glyco_trans_4_3: Gkycosyl transferase family 4 gro | 93.72 | |
| PRK10964 | 322 | ADP-heptose:LPS heptosyl transferase I; Provisiona | 93.7 | |
| PRK10422 | 352 | lipopolysaccharide core biosynthesis protein; Prov | 93.49 | |
| PF04230 | 286 | PS_pyruv_trans: Polysaccharide pyruvyl transferase | 93.43 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 93.36 | |
| PF12038 | 168 | DUF3524: Domain of unknown function (DUF3524); Int | 93.3 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 92.97 | |
| COG2327 | 385 | WcaK Polysaccharide pyruvyl transferase family pro | 92.94 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 92.83 | |
| TIGR02193 | 319 | heptsyl_trn_I lipopolysaccharide heptosyltransfera | 92.62 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 92.59 | |
| KOG3349 | 170 | consensus Predicted glycosyltransferase [General f | 91.25 | |
| PF06925 | 169 | MGDG_synth: Monogalactosyldiacylglycerol (MGDG) sy | 90.16 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 90.1 | |
| PF03853 | 169 | YjeF_N: YjeF-related protein N-terminus; InterPro: | 89.33 | |
| PRK09739 | 199 | hypothetical protein; Provisional | 89.03 | |
| PF03033 | 139 | Glyco_transf_28: Glycosyltransferase family 28 N-t | 88.37 | |
| PRK06988 | 312 | putative formyltransferase; Provisional | 86.58 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 86.27 | |
| PF03016 | 302 | Exostosin: Exostosin family; InterPro: IPR004263 H | 85.39 | |
| PRK00207 | 128 | sulfur transfer complex subunit TusD; Validated | 84.84 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 84.12 | |
| KOG1021 | 464 | consensus Acetylglucosaminyltransferase EXT1/exost | 83.97 | |
| PF01975 | 196 | SurE: Survival protein SurE; InterPro: IPR002828 T | 83.27 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 83.11 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 83.02 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 82.24 | |
| PRK05647 | 200 | purN phosphoribosylglycinamide formyltransferase; | 81.14 | |
| PF03358 | 152 | FMN_red: NADPH-dependent FMN reductase; InterPro: | 80.97 |
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=353.96 Aligned_cols=355 Identities=19% Similarity=0.227 Sum_probs=271.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------hh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QE 143 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 143 (470)
.||+++.+.+..||+++++.+|++.|.+.||++.+++..+... +.......++.++.... ..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSA-------FRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCCh-------hHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 5899999999999999999999999999999999988543221 33444455665544321 23
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc-----cchhh-hhc-ccccccceeeeehhhHHH
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLD-YVK-HLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-----~~~~~-~~~-~~~~~~~~~~~s~~~~~~ 216 (470)
.+.+..+||+||+|+............... +..+++.|..... .+... ..+ .....+.+++.|....+.
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~ 150 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAALAGV----PARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW 150 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHhcCC----CeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH
Confidence 445678999999997543221111111111 1223334432110 01111 111 123456677777777665
Q ss_pred HHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
+.+ .++++..++.+||||+|.+.|.+.... +...+++...++++++++++||+.+.||++.+++|+.++.
T Consensus 151 ~~~----~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 151 LRG----PVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred HHH----hcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 543 567778889999999999887654321 1222333344567899999999999999999999999886
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
+...+ ..++++|+++|+| +..+.+++.++++++.+++.|+|+.+++.++|+.||++|+||. .||||++++
T Consensus 221 ~~~~~---~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~l 290 (374)
T TIGR03088 221 RQLPE---GAERLRLVIVGDG-----PARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTIL 290 (374)
T ss_pred HhCcc---cccceEEEEecCC-----chHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHH
Confidence 63321 1247999999998 5678899999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
|||+||+|||+|+.||.+|++.++.+|++++++| +++++++|.+++++++.+..+++++++++.++|||+.+++++.+
T Consensus 291 EAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 368 (374)
T TIGR03088 291 EAMASGLPVIATAVGGNPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAG 368 (374)
T ss_pred HHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012132 457 VLKEVL 462 (470)
Q Consensus 457 ~~~~~l 462 (470)
+|++++
T Consensus 369 ~y~~~~ 374 (374)
T TIGR03088 369 LYDQLL 374 (374)
T ss_pred HHHHhC
Confidence 998863
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=353.39 Aligned_cols=352 Identities=17% Similarity=0.177 Sum_probs=262.2
Q ss_pred ccccEEEEEeeccC---CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh-hhhhcceee-----Ee---c
Q 012132 72 MKSKLVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH-KMWDRGVQV-----IS---A 139 (470)
Q Consensus 72 ~~~~kIl~v~~~~~---~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~---~ 139 (470)
+++|||+++....+ .||++.++.+++++|.++||+|++++......... ..... ......... .. .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEF--HGAKVIGSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccc--cCceeeccCCcCCccCCCceeeccCC
Confidence 67899999976432 37889999999999999999999999654321100 00000 000000000 00 0
Q ss_pred CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh---------h---hhccccccccee
Q 012132 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---------D---YVKHLPLVAGAM 207 (470)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~---------~---~~~~~~~~~~~~ 207 (470)
.....+.+..+||+||+|++....+........ ...|++.+.|+....+... . ........+.++
T Consensus 134 ~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~---~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 134 PRIISEVARFKPDLIHASSPGIMVFGALFYAKL---LCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred HHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH---hCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 123345567899999999865433333222221 1257778888653222110 0 112234567777
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcC-CCCCCeEEEEEeecccCCCHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
+.|....+.+.+ ....+.+++.+||||+|.+.|.+.... ...+.++. .++++++|+++||+.+.||++
T Consensus 211 ~~S~~~~~~l~~----~~~~~~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~ 279 (465)
T PLN02871 211 VTSPALGKELEA----AGVTAANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKPLIVYVGRLGAEKNLD 279 (465)
T ss_pred ECCHHHHHHHHH----cCCCCcCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCeEEEEeCCCchhhhHH
Confidence 777777665543 333456789999999999988654321 23444443 234678899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
.++++++++ ++++|+|+|+| ++.+++++++++ .+|+|+|++ +++.++|+.||++|+||
T Consensus 280 ~li~a~~~~-----------~~~~l~ivG~G-----~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 280 FLKRVMERL-----------PGARLAFVGDG-----PYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred HHHHHHHhC-----------CCcEEEEEeCC-----hHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 999998755 78999999998 678888888774 379999987 78999999999999999
Q ss_pred CCcccccchHHHHHHhcCCCEEecCCCCcceeeec---CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
. .|+||++++|||+||+|||+++.||+.|++.+ +++|++++++| +++++++|.++++|++.+++|++++++.+
T Consensus 340 ~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 340 E--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMGAAAREEV 415 (465)
T ss_pred c--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999998 99999999998 99999999999999999999999999988
Q ss_pred HHHcChhHHHHHHHH-HHHHHHHh
Q 012132 442 KEIFQEHHMAERIAV-VLKEVLKK 464 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~-~~~~~l~~ 464 (470)
+ +|+|+.+++++++ +|++++..
T Consensus 416 ~-~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 416 E-KWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred H-hCCHHHHHHHHHHHHHHHHHHH
Confidence 4 6999999999998 79998764
|
|
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=350.04 Aligned_cols=370 Identities=19% Similarity=0.202 Sum_probs=270.0
Q ss_pred ccccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH-----hhhhhh---------hhcc
Q 012132 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY-----SLEHKM---------WDRG 133 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~~~~~~---------~~~~ 133 (470)
|++|||+|++.+..| ||-.-++..|.++|+++||+|.|+.+..+........ .+.... ...|
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 577999999999655 6669999999999999999999999765443211000 000000 0012
Q ss_pred eeeEec--------C---------------Chh---------hHH----hhcCCcEEEEcccchhhhHHHHhhhcCCccc
Q 012132 134 VQVISA--------K---------------GQE---------TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (470)
Q Consensus 134 ~~~~~~--------~---------------~~~---------~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (470)
+.++-. . ..+ .+. ...+|||||+|+..++.....+.... ...
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~--~~~ 158 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSG--RPA 158 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCC--CCC
Confidence 222110 0 000 001 13689999999966554433222111 122
Q ss_pred cceeeEEeeecccc-chh------------------h-------hhcccccccceeeeehhhHHHHHHhh-----hhhhc
Q 012132 178 PNVLWWIHEMRGHY-FKL------------------D-------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLR 226 (470)
Q Consensus 178 ~~~~~~~h~~~~~~-~~~------------------~-------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~ 226 (470)
.+.+.|+|+..... +.. . ....+...+.++++|...++.+.+.. ...++
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 57899999864211 100 0 12224566778888888877665321 01122
Q ss_pred cCCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHH
Q 012132 227 IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+..++.+|+||+|.+.|.|..+.. .+...+..+|+++|++. +.++++++||+.++||++.+++|+.
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~ 318 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALP 318 (485)
T ss_pred hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHH
Confidence 3567899999999999988764421 12233567899999974 4688999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE-EEecccCCHHHHH-HhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYL-AAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V-~~~g~~~~~~~~~-~~aDv~v~pS~~~~E~~ 371 (470)
.+.+ .+++|+|+|+|.+ ++.+.+++++++++ +++ .++|+.+++..+| +.||+|++||. .|+|
T Consensus 319 ~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~f 382 (485)
T PRK14099 319 TLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP--GQIGVVIGYDEALAHLIQAGADALLVPSR--FEPC 382 (485)
T ss_pred HHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCC
Confidence 8854 5789999999841 36788888888765 445 7999988999987 57999999999 9999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeecC---------ceeeeecCCCCChHHHHHHHHH---HHhCHHHHHHHHHHHHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVK---LATHVERRLTMGKRGYE 439 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~---ll~~~~~~~~~~~~a~~ 439 (470)
|++++|||+||+|+|++++||++|+|.++ .+|+++++.| +++|+++|.+ +++|++.++++++++++
T Consensus 383 Gl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai~~a~~l~~d~~~~~~l~~~~~~ 460 (485)
T PRK14099 383 GLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAALRKTAALFADPVAWRRLQRNGMT 460 (485)
T ss_pred cHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 99999999999999999999999999775 6899999999 9999999997 67799999999998863
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 440 RVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+.|||++++++|+++|++++..
T Consensus 461 ---~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 461 ---TDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred ---hcCChHHHHHHHHHHHHHHHhh
Confidence 6799999999999999999864
|
|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=362.72 Aligned_cols=370 Identities=15% Similarity=0.115 Sum_probs=273.0
Q ss_pred ccccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh--h------------hhhcc
Q 012132 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--K------------MWDRG 133 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~--~------------~~~~~ 133 (470)
..+|||++++.++.| ||..-++..|+++|+++||+|.|+++..+.........+.. . ....|
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 345999999998765 66699999999999999999999997665321110000000 0 00113
Q ss_pred eeeEecCCh--------------------------hhHH--hhcCCcEEEEcccchhhhHHHHhhhc--CCccccceeeE
Q 012132 134 VQVISAKGQ--------------------------ETIN--TALKADLIVLNTAVAGKWLDAVLKED--VPRVLPNVLWW 183 (470)
Q Consensus 134 ~~~~~~~~~--------------------------~~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 183 (470)
+.++..... ..+. ...+|||||+|+...+.....+.... ......+++.+
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~T 744 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFT 744 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEE
Confidence 333221110 0111 12589999999865544332221110 01122588999
Q ss_pred EeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhcc--CCCceEEEecCCchhhhhHhhhHH----------
Q 012132 184 IHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI--KMPDTYVVHLGNSKELMEVAEDNV---------- 251 (470)
Q Consensus 184 ~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~~---------- 251 (470)
+|+... ........+...+.++++|...+..+.. ...+ ...++.+|+||||.+.|.|..+..
T Consensus 745 iHnl~~--~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~ 818 (1036)
T PLN02316 745 IHNLEF--GANHIGKAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENV 818 (1036)
T ss_pred eCCccc--chhHHHHHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECCccccccCCcccccccccCCchhh
Confidence 997532 1122334456778889899888766553 2222 347899999999999887653311
Q ss_pred --HHHHHHHHHHHHcCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHH
Q 012132 252 --AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 328 (470)
Q Consensus 252 --~~~~~~~~~r~~~~~~~-~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l 328 (470)
.+...+..+++++|++. +.++|+++||+.++||++.|++|+.++.+ ++++|+|+|+|+. +++.+.+
T Consensus 819 ~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~---------~~~qlVIvG~Gpd--~~~e~~l 887 (1036)
T PLN02316 819 VEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE---------RNGQVVLLGSAPD--PRIQNDF 887 (1036)
T ss_pred hhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh---------cCcEEEEEeCCCC--HHHHHHH
Confidence 11233567899999984 67899999999999999999999998854 5799999999843 2467889
Q ss_pred HHHHHhcCC--CCcEEEecccCCH--HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecC----
Q 012132 329 RNYVMQKKI--QDRVHFVNKTLTV--APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---- 400 (470)
Q Consensus 329 ~~~~~~~~l--~~~V~~~g~~~~~--~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~---- 400 (470)
+++++++++ +++|.|.|..++. ..+|++||+||+||+ .|+||++.+|||+||+|+|++++||++|+|.++
T Consensus 888 ~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~ 965 (1036)
T PLN02316 888 VNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDK 965 (1036)
T ss_pred HHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccc
Confidence 999998876 5789998765443 379999999999999 999999999999999999999999999999874
Q ss_pred ---------ceeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 401 ---------TTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 401 ---------~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
.+|+++++.| +++|+++|.+++.+ ++.+..+++.+++.+.+.|||+.++++|+++|+++.
T Consensus 966 ~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 966 ERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred ccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 6899999999 99999999999986 455677788888888889999999999999999875
|
|
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=344.71 Aligned_cols=345 Identities=18% Similarity=0.158 Sum_probs=261.9
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (470)
||+++++.+.| ||.++++.+++++|.++||+|+|++...+.... ......++.++..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-------~~~~~~~i~v~~~p~~~~~~~~~~~~~ 73 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG-------IRYLTNGLKVYYLPFVVFYNQSTLPTF 73 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC-------cccccCceeEEEecceeccCCccccch
Confidence 69999997765 666999999999999999999999965332110 01111233332211
Q ss_pred -----ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeee
Q 012132 141 -----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMID 209 (470)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~ 209 (470)
..+......+||+||+|++............. ....|++++.|+..+.. ........+...+.+++.
T Consensus 74 ~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~--~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 74 FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHAR--TMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICV 151 (398)
T ss_pred hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhh--hcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEe
Confidence 12234456899999999865443222111111 12257888999754311 111122234567778888
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
|....+.... ..+++.+++.+||||+|.+.|.+.... .++++++++++||+.+.||++.++
T Consensus 152 s~~~~~~~~~----~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~~li 212 (398)
T cd03796 152 SHTSKENTVL----RASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGIDLLV 212 (398)
T ss_pred cHhHhhHHHH----HhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHHHHH
Confidence 8777654322 345677889999999999887654321 235778999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~ 367 (470)
+|+..+.+ +.++++|+|+|+| +..+.++++++++++.++|+|+|+. +++..+|+.+|++++||.
T Consensus 213 ~a~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~-- 278 (398)
T cd03796 213 GIIPEICK-------KHPNVRFIIGGDG-----PKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL-- 278 (398)
T ss_pred HHHHHHHh-------hCCCEEEEEEeCC-----chHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh--
Confidence 99998765 4589999999998 5778899999999999999999985 789999999999999999
Q ss_pred ccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCh
Q 012132 368 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447 (470)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 447 (470)
.|+||++++|||+||+|||+++.||.+|++.++ .+++.+ .| .++++++|.+++++......+++++++++.++|||
T Consensus 279 ~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~-~~~~~~-~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~ 354 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPD-MILLAE-PD--VESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSW 354 (398)
T ss_pred hhccCHHHHHHHHcCCCEEECCCCCchhheeCC-ceeecC-CC--HHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCH
Confidence 899999999999999999999999999999765 344444 46 89999999999998776667889999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 012132 448 HHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 448 ~~~~~~~~~~~~~~l~~~~ 466 (470)
+.+++++.++|++++....
T Consensus 355 ~~~~~~~~~~y~~l~~~~~ 373 (398)
T cd03796 355 EDVAKRTEKVYDRILQTPN 373 (398)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999999999986543
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=352.36 Aligned_cols=377 Identities=14% Similarity=0.111 Sum_probs=277.2
Q ss_pred ccccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh-----------hhh-------
Q 012132 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----------HKM------- 129 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----------~~~------- 129 (470)
.+.|||+|++.+..| ||-+-++..|.++|+++||+|.|+++..+.........+. ...
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 356899999999765 6669999999999999999999999876543211110000 000
Q ss_pred -hhcceeeEecCC------------h-------h---------hHHh--hcCCcEEEEcccchhhhHHHHhhhc--CCcc
Q 012132 130 -WDRGVQVISAKG------------Q-------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKED--VPRV 176 (470)
Q Consensus 130 -~~~~~~~~~~~~------------~-------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~ 176 (470)
...|+.++.+.. . + .+.. ..+|||||+|+...+.....+.... ....
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~ 638 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFN 638 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCC
Confidence 012344332210 0 0 0111 2689999999987665422222110 0112
Q ss_pred ccceeeEEeeecccc-ch----------------hhh------------hcccccccceeeeehhhHHHHHHh----hhh
Q 012132 177 LPNVLWWIHEMRGHY-FK----------------LDY------------VKHLPLVAGAMIDSHVTAEYWKNR----TRE 223 (470)
Q Consensus 177 ~~~~~~~~h~~~~~~-~~----------------~~~------------~~~~~~~~~~~~~s~~~~~~~~~~----~~~ 223 (470)
..++++++|+....- +. ... ...+...+.++++|...+..+... +..
T Consensus 639 ~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~ 718 (977)
T PLN02939 639 SARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQD 718 (977)
T ss_pred CCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHH
Confidence 357899999864111 00 000 011234677888888887766542 122
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC---CCeEEEEEeecccCCCHHHHH
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~---~~~~i~~vGrl~~~Kg~~~ll 289 (470)
.++....++.+|+||||.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.++
T Consensus 719 ~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLl 798 (977)
T PLN02939 719 TLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIR 798 (977)
T ss_pred HhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHH
Confidence 3456778999999999999998765321 12234677999999984 468999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCC--HHHHHHhcCEEEEccCCc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQAW 367 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~--~~~~~~~aDv~v~pS~~~ 367 (470)
+|+..+.+ ++++|+|+|+|+.. .+.+.++++++++++.++|.|+|..++ ...+|++||+||+||+
T Consensus 799 eA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr-- 865 (977)
T PLN02939 799 HAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSM-- 865 (977)
T ss_pred HHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCC--
Confidence 99988754 57899999998421 356889999999999999999997644 3579999999999999
Q ss_pred ccccchHHHHHHhcCCCEEecCCCCcceeeec---------CceeeeecCCCCChHHHHHHHHHHHh----CHHHHHHHH
Q 012132 368 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---------GTTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMG 434 (470)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~---------~~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~ 434 (470)
+|+||++++|||+||+|+|++++||+.|+|.+ +.+|+++++.| +++|+++|.+++. |++.+.+|+
T Consensus 866 ~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~eaLa~AL~rAL~~~~~dpe~~~~L~ 943 (977)
T PLN02939 866 FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQGLNSALERAFNYYKRKPEVWKQLV 943 (977)
T ss_pred ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCC--HHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999999999999999999999875 57999999998 9999999998875 789999998
Q ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 435 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 435 ~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
+++. .+.|||+.++++|+++|++++....
T Consensus 944 ~~am---~~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 944 QKDM---NIDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred HHHH---HhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 8764 3679999999999999999987543
|
|
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=345.81 Aligned_cols=343 Identities=20% Similarity=0.220 Sum_probs=261.0
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC----------------------Chhh
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------------------GQET 144 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 144 (470)
||+++++.+|+++|.++||+|+|+|......... ......|+.++... ..+.
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPP------VVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRA 93 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------ccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 7779999999999999999999999643321110 00012334443221 0001
Q ss_pred HHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------ch---hh--hhcccccccceee
Q 012132 145 INT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FK---LD--YVKHLPLVAGAMI 208 (470)
Q Consensus 145 ~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------~~---~~--~~~~~~~~~~~~~ 208 (470)
+.+ ..+||+||+|....+. ....+... ...|++++.|+..... .. .. ....+...+.+++
T Consensus 94 ~~~~~~~~~Diih~h~~~~~~-~~~~~~~~---~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~ 169 (405)
T TIGR03449 94 EARHEPGYYDLIHSHYWLSGQ-VGWLLRDR---WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIA 169 (405)
T ss_pred HhhccCCCCCeEEechHHHHH-HHHHHHHh---cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEE
Confidence 111 2479999999744332 22222221 1247888999753100 00 00 1123456677777
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
.|....+.+. ..++.+..++.+||||+|.+.|.+.. +...++++++++++++|+++||+.+.||++.+
T Consensus 170 ~s~~~~~~~~----~~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~l 237 (405)
T TIGR03449 170 NTDEEARDLV----RHYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPDVL 237 (405)
T ss_pred CCHHHHHHHH----HHcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHHHH
Confidence 7776655443 35677778899999999998886542 34467788988888999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCc--eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 289 LHSFYESLELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~--~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
++|++++.+ +.++ ++|+|+|++.....+..++++++++++++.++|+|+|+. +++.++|+.||++++||
T Consensus 238 i~a~~~l~~-------~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 310 (405)
T TIGR03449 238 LRAVAELLD-------RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPS 310 (405)
T ss_pred HHHHHHHHh-------hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECC
Confidence 999998865 3355 999999964322214678899999999999999999985 78999999999999999
Q ss_pred CCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
. .|+||++++|||++|+|||+++.||.+|++.++.+|++++++| +++++++|.+++++++.++++++++++.+ ++
T Consensus 311 ~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~ 385 (405)
T TIGR03449 311 Y--NESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAAAVEHA-AG 385 (405)
T ss_pred C--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-Hh
Confidence 9 9999999999999999999999999999999999999999988 99999999999999999999999999987 56
Q ss_pred cChhHHHHHHHHHHHHHHH
Q 012132 445 FQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 445 fs~~~~~~~~~~~~~~~l~ 463 (470)
|||+++++++.++|.+++.
T Consensus 386 fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 386 FSWAATADGLLSSYRDALA 404 (405)
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999864
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=350.05 Aligned_cols=367 Identities=16% Similarity=0.179 Sum_probs=265.1
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh---h---------hhhhcceeeEe
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE---H---------KMWDRGVQVIS 138 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~ 138 (470)
|||++++.++.| ||.+.++..|+++|+++||+|.|+++..+...... .... . .....|++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVVGRLDLFTVLFGHLEGDGVPVYL 79 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEEEEeeeEEEEEEeEEcCCceEEE
Confidence 799999998543 66699999999999999999999997654321110 0000 0 00113444432
Q ss_pred cCC------------h-------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhc-CCccccceeeEEeeeccc
Q 012132 139 AKG------------Q-------------ETINT--ALKADLIVLNTAVAGKWLDAVLKED-VPRVLPNVLWWIHEMRGH 190 (470)
Q Consensus 139 ~~~------------~-------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~ 190 (470)
... . ..+.. ..+|||||+|+..++.....+.... ......|+++|+|+....
T Consensus 80 v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~ 159 (466)
T PRK00654 80 IDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQ 159 (466)
T ss_pred EeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCC
Confidence 110 0 01111 2489999999866554333222110 111136899999986421
Q ss_pred c-ch---------------hh----------hhcccccccceeeeehhhHHHHHHh-----hhhhhccCCCceEEEecCC
Q 012132 191 Y-FK---------------LD----------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGN 239 (470)
Q Consensus 191 ~-~~---------------~~----------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~ngv 239 (470)
. +. .. ....+...+.++++|....+.+... +...++.+..++.+|+||+
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGi 239 (466)
T PRK00654 160 GLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGI 239 (466)
T ss_pred CcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCC
Confidence 0 10 00 0112355677888888876665432 1112334567899999999
Q ss_pred chhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC
Q 012132 240 SKELMEVAEDNV-----------AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (470)
Q Consensus 240 d~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~-~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 307 (470)
|.+.|.|..+.. .+...++.+|+++|+++ +.++|+++||+.++||++.+++|++++.+ .
T Consensus 240 d~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~ 310 (466)
T PRK00654 240 DYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------Q 310 (466)
T ss_pred CccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------c
Confidence 999987653211 11233567899999985 67899999999999999999999998854 5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCC-HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~-~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+++|+|+|+|.+ ++.+.+++++++++ +++. +.|+.++ +..+|++||++|+||. .|+||++++|||+||+|+
T Consensus 311 ~~~lvivG~g~~---~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDP---ELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLP 383 (466)
T ss_pred CCEEEEEecCcH---HHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCE
Confidence 799999998732 36788999998886 3565 4677644 5688999999999999 999999999999999999
Q ss_pred EecCCCCcceeeecC------ceeeeecCCCCChHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 386 LGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 386 I~s~~~g~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
|++++||+.|++.++ .+|++++++| +++|+++|.++++ +++.+.++++++++ +.|||++++++|++
T Consensus 384 V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~ 458 (466)
T PRK00654 384 IVRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRALELYRQPPLWRALQRQAMA---QDFSWDKSAEEYLE 458 (466)
T ss_pred EEeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHHHHHHHH
Confidence 999999999999888 8999999998 9999999999886 67778888887753 67999999999999
Q ss_pred HHHHHHH
Q 012132 457 VLKEVLK 463 (470)
Q Consensus 457 ~~~~~l~ 463 (470)
+|++++.
T Consensus 459 lY~~~~~ 465 (466)
T PRK00654 459 LYRRLLG 465 (466)
T ss_pred HHHHHhh
Confidence 9999874
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=353.51 Aligned_cols=353 Identities=15% Similarity=0.155 Sum_probs=257.4
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCc--------------eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT--------------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK- 140 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~--------------~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (470)
||+++.+....||+|+++.+|+.+|.+.++ +|.+++........ .+...+...|+.+....
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~----~~~~~L~~~Gv~v~~l~~ 358 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD----FFAATLADAGIPVSVYSD 358 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc----hHHHHHHhCCCeEEEecc
Confidence 799999999999999999999999999854 34444322111000 11223334555443221
Q ss_pred --------------------------------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceee-EEeee
Q 012132 141 --------------------------------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW-WIHEM 187 (470)
Q Consensus 141 --------------------------------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 187 (470)
....+.+..+|||||+|+.....+...+... . ..|+++ +.|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~-~---gvPvIv~t~h~~ 434 (694)
T PRK15179 359 MQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALL-A---GVPRIVLSVRTM 434 (694)
T ss_pred CCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHH-c---CCCEEEEEeCCC
Confidence 1123456689999999987655433322221 1 134444 45643
Q ss_pred ccccchhhh----h---cccccccce--eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHH
Q 012132 188 RGHYFKLDY----V---KHLPLVAGA--MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (470)
Q Consensus 188 ~~~~~~~~~----~---~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (470)
........+ . ..+...+.. +++|... .+.+.+.++++.+++.|||||+|.+.|.+.+... ..+.
T Consensus 435 ~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~----~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~---~~~~ 507 (694)
T PRK15179 435 PPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFA----AHRYADWLGVDERRIPVVYNGLAPLKSVQDDACT---AMMA 507 (694)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHH----HHHHHHHcCCChhHEEEECCCcCHHhcCCCchhh---HHHH
Confidence 221111111 1 111222322 3333333 3334446788889999999999988875432110 0011
Q ss_pred HHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC
Q 012132 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (470)
Q Consensus 259 ~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (470)
.++ ...+.+.++|+++||+.+.||++.+++|++++.+ ++|+++|+|+|+| +..+.++++++++++.
T Consensus 508 ~~~--~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G-----~~~~~L~~l~~~lgL~ 573 (694)
T PRK15179 508 QFD--ARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA-------SHPKVRFIMVGGG-----PLLESVREFAQRLGMG 573 (694)
T ss_pred hhc--cccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH-------HCcCeEEEEEccC-----cchHHHHHHHHHcCCC
Confidence 111 2234567899999999999999999999998865 4589999999998 5788999999999999
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHH
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (470)
++|+|+|+++++..+|+.+|++|+||. +|+||++++|||+||+|||+|+.||.+|+|.++.+|++++++|.+++++++
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~ 651 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAE 651 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHH
Confidence 999999999999999999999999999 999999999999999999999999999999999999999988855679999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+|.+++.+......+++++++++.++|||+.++++++++|+
T Consensus 652 aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 652 ALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99998887666677889999999999999999999999995
|
|
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=342.68 Aligned_cols=349 Identities=17% Similarity=0.199 Sum_probs=264.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH---H-Hhhhhhh-----------hhcc------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---I-YSLEHKM-----------WDRG------ 133 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---~-~~~~~~~-----------~~~~------ 133 (470)
|||+++...+|. -.|+++.+-+.+|.++||+|.+++..++...... . +.+.... ....
T Consensus 1 m~ia~~~~~~P~-~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFPL-SSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCCc-cchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 699999999984 3389999999999999999999996544321100 0 0000000 0000
Q ss_pred ee-eE-----ecCC-------h---------hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc
Q 012132 134 VQ-VI-----SAKG-------Q---------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (470)
Q Consensus 134 ~~-~~-----~~~~-------~---------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 191 (470)
.. .. .... . ....+..+||+||+|....+.....+... .....+.+++.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~--~~~~~~~~~t~Hg~d~~~ 157 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLREL--GVLRGKIATIFHGIDISS 157 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHh--CCCCCCeEEEEccccccc
Confidence 00 00 0000 0 01123568999999987654433332221 112235677888753211
Q ss_pred ------chhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcC
Q 012132 192 ------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265 (470)
Q Consensus 192 ------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~ 265 (470)
+...+...+...+.+++.|....+.+. .++++.+++.+||||+|.+.|.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~-----~~g~~~~ki~vi~nGvd~~~f~~~~~~--------------- 217 (406)
T PRK15427 158 REVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQ-----KMGCPPEKIAVSRMGVDMTRFSPRPVK--------------- 217 (406)
T ss_pred chhhhhhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCHHHEEEcCCCCCHHHcCCCccc---------------
Confidence 112334445677788888877766554 357778899999999999988643211
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.+.+++.|+++||+.+.||++.+++|++.+.+ +.++++++|+|+| ++.++++++++++++.++|+|+|
T Consensus 218 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G-----~~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 APATPLEIISVARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIG-----PWERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEeC
Confidence 12456789999999999999999999998855 4478999999999 68899999999999999999999
Q ss_pred cc--CCHHHHHHhcCEEEEccCC----cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHH
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 419 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (470)
++ +++.++|+.||++|+||.. ..||+|++++|||+||+|||+|+.||++|++.++.+|++++++| +++++++
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d--~~~la~a 363 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPEND--AQALAQR 363 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCC--HHHHHHH
Confidence 86 7899999999999999971 03999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 420 IVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 420 i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
|.++++ |++.+++|++++++++.++|+|+.+++++.++|++
T Consensus 364 i~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 364 LAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 999999 99999999999999999999999999999999986
|
|
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=346.76 Aligned_cols=357 Identities=14% Similarity=0.082 Sum_probs=269.1
Q ss_pred cEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHh----hhhhhhhcceeeEecCCh------
Q 012132 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS----LEHKMWDRGVQVISAKGQ------ 142 (470)
Q Consensus 75 ~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------ 142 (470)
|||++++..+.| ||++.++.+++++|.++||+|+|+|..+..+.+..... ........|+.+++.+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 799999987765 77899999999999999999999996532111100000 000111235555443210
Q ss_pred ----------------hhHHh--hcCCcEEEEcccchhh-hHHHHhhhcCCccccceeeEEeeecccc------ch----
Q 012132 143 ----------------ETINT--ALKADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHY------FK---- 193 (470)
Q Consensus 143 ----------------~~~~~--~~~~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~---- 193 (470)
..+.+ ..+||+||+|.+.... .....++... ..++++++|+..... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~---~~~~v~~~~d~~~~~~~~~~~~~~~~~ 157 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLS---GARTWLHIQDYEVDAAFGLGLLKGGKV 157 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhh---CCCEEEEeccCCHHHHHHhCCccCcHH
Confidence 00111 2689999999865322 1222222211 146777788754211 00
Q ss_pred -----hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC
Q 012132 194 -----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (470)
Q Consensus 194 -----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (470)
......+..++.+++.|....+.+. .++.+..++.+||||+|.+.|.+.... .+..+++++++++
T Consensus 158 ~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~-----~~~~~~~~i~vi~ngvd~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (412)
T PRK10307 158 ARLATAFERSLLRRFDNVSTISRSMMNKAR-----EKGVAAEKVIFFPNWSEVARFQPVADA-----DVDALRAQLGLPD 227 (412)
T ss_pred HHHHHHHHHHHHhhCCEEEecCHHHHHHHH-----HcCCCcccEEEECCCcCHhhcCCCCcc-----chHHHHHHcCCCC
Confidence 0112234567888888888877654 346677889999999999887654221 1345788899988
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (470)
++++++|+|++.+.||++.+++|++.+. +.++++|+|+|+| +..++++++++++++. +|+|+|++
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~--------~~~~~~l~ivG~g-----~~~~~l~~~~~~~~l~-~v~f~G~~~ 293 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLR--------DRPDLIFVICGQG-----GGKARLEKMAQCRGLP-NVHFLPLQP 293 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhc--------cCCCeEEEEECCC-----hhHHHHHHHHHHcCCC-ceEEeCCCC
Confidence 8899999999999999999999998763 2378999999999 6788999999999986 79999985
Q ss_pred -CCHHHHHHhcCEEEEccCCcccc----cchHHHHHHhcCCCEEecCCCC--cceeeecCceeeeecCCCCChHHHHHHH
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQLPVLGTAAGG--TTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~----~g~~~lEAma~G~PvI~s~~~g--~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
+++..+|++||++++||. .|+ +|.+++|||+||+|||+|+.+| ..|++. ++|++++++| +++|+++|
T Consensus 294 ~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d--~~~la~~i 367 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPES--VEALVAAI 367 (412)
T ss_pred HHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCC--HHHHHHHH
Confidence 689999999999999999 788 5777899999999999999876 457775 5899999998 99999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
.++++|++.+++|+++++++++++|||+.++++++++|++++.+
T Consensus 368 ~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 368 AALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998864
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=338.55 Aligned_cols=352 Identities=20% Similarity=0.247 Sum_probs=267.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee--E---e--------cCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I---S--------AKG 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--------~~~ 141 (470)
|||+++++. ..||.++++.++++.|.++||+|+|++...+...... ........+.+ . . ...
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY----SPNIFFHEVEVPQYPLFQYPPYDLALASK 75 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh----ccCeEEEEecccccchhhcchhHHHHHHH
Confidence 689999842 3477799999999999999999999996543211000 00000000000 0 0 011
Q ss_pred hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeeeehhhHH
Q 012132 142 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~ 215 (470)
.....+..+||+||+|......+..............+++++.|+..... +.......+...+.+++.|....+
T Consensus 76 l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 155 (371)
T cd04962 76 IAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQ 155 (371)
T ss_pred HHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHH
Confidence 22334567999999997543322222222111112357888899643211 111223334567788888887766
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+.+ .++ ...++.+||||+|...+.+.. ....+++++++++..+++++||+.+.||++.+++++.++
T Consensus 156 ~~~~----~~~-~~~~i~vi~n~~~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l 222 (371)
T cd04962 156 ETYE----LFD-ITKEIEVIPNFVDEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKV 222 (371)
T ss_pred HHHH----hcC-CcCCEEEecCCcCHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHH
Confidence 5553 332 456799999999988775443 234567788888899999999999999999999999887
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
.+ + ++++++++|.| +..+.++++++++++.++|+|+|+.+++.++|+.+|++++||. .|+||+++
T Consensus 223 ~~-------~-~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~~~~~~ 287 (371)
T cd04962 223 RK-------E-VPARLLLVGDG-----PERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KESFGLAA 287 (371)
T ss_pred Hh-------c-CCceEEEEcCC-----cCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCCCccHH
Confidence 54 1 46899999998 4677889999999999999999999999999999999999998 99999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+|||++|+|||+|+.|+..|++.++.+|++++++| +++++++|.++++|++.+.+|++++++.+.++|||+.+++++.
T Consensus 288 ~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 365 (371)
T cd04962 288 LEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYE 365 (371)
T ss_pred HHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999988 9999999999999999999999999999889999999999999
Q ss_pred HHHHHH
Q 012132 456 VVLKEV 461 (470)
Q Consensus 456 ~~~~~~ 461 (470)
++|+++
T Consensus 366 ~~y~~~ 371 (371)
T cd04962 366 ALYRRL 371 (371)
T ss_pred HHHHhC
Confidence 999863
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=343.18 Aligned_cols=352 Identities=15% Similarity=0.155 Sum_probs=244.2
Q ss_pred CchhHHHHHHHHHHHhCCc--eEEEEecCCCCCc--hhHHHhhhhhhhhcceeeEecCC---------------------
Q 012132 87 SGGPLLLMELAFLLRGVGT--KVNWITIQKPSEE--DEVIYSLEHKMWDRGVQVISAKG--------------------- 141 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------- 141 (470)
||.++++.+|+++|+++|| +|+|+|...+... ....... .....|+.+++...
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~--~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPI--ERIAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCe--eEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 7779999999999999997 9999995322110 0000000 11124555544321
Q ss_pred hhhHHhh--cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---------h-------------hhh
Q 012132 142 QETINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------L-------------DYV 197 (470)
Q Consensus 142 ~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---------~-------------~~~ 197 (470)
.....+. .+|||||+|+...+.. ........ ..|++.+.|+....... . ...
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~~~~~-~~~~~~~~---~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYADAGYV-GARLSRLL---GVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEE 179 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchhHHHH-HHHHHHHh---CCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHH
Confidence 1112222 3699999998544333 22222222 24788999974321100 0 001
Q ss_pred cccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEe
Q 012132 198 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 277 (470)
Q Consensus 198 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vG 277 (470)
..+...+.+++.+.. ...+.+....+++.+++.+||||+|.+.|.+..........+. .+++++.+++.++|+++|
T Consensus 180 ~~~~~ad~ii~~s~~---~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~vG 255 (439)
T TIGR02472 180 ETLAHASLVITSTHQ---EIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDN-LLAPFLKDPEKPPILAIS 255 (439)
T ss_pred HHHHhCCEEEECCHH---HHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHH-HHHhhccccCCcEEEEEc
Confidence 123445556665432 2222222223677889999999999998876432111111112 223345556778999999
Q ss_pred ecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC------hHHHHHHHHHHHhcCCCCcEEEecc--cCC
Q 012132 278 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNK--TLT 349 (470)
Q Consensus 278 rl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~------~~~~~~l~~~~~~~~l~~~V~~~g~--~~~ 349 (470)
|+.+.||++.+++|++.+.+ ++ +.+++. +|+|+|+... .++.+.+.++++++++.++|+|+|+ .++
T Consensus 256 rl~~~Kg~~~li~A~~~l~~-~~----~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~ 329 (439)
T TIGR02472 256 RPDRRKNIPSLVEAYGRSPK-LQ----EMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDD 329 (439)
T ss_pred CCcccCCHHHHHHHHHhChh-hh----hhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHH
Confidence 99999999999999986522 11 113433 3567764221 0123456677889999999999996 478
Q ss_pred HHHHHHhc----CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 350 VAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 350 ~~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+.++|+.| |+||+||. .|+||++++||||||+|||+|+.||++|++.++.+|++++++| +++|+++|.++++
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i~~ll~ 405 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLD--LEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHh
Confidence 99999987 99999999 9999999999999999999999999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 426 HVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
|++.++++++++++++.++|||+.++++|++++
T Consensus 406 ~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 406 DSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999876
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=325.57 Aligned_cols=352 Identities=18% Similarity=0.186 Sum_probs=251.0
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHH----HhCCc--------eEEEEecCCCCCchhHHHhhhhhhhhcceeeEec----
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLL----RGVGT--------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA---- 139 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L----~~~G~--------~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 139 (470)
.+++++.++..||+|+.+.+++-++ ++.|- .|.++|..-.+... .+.+...+...++.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELR--QDFFLKEVLEEQVEVLEIAKIT 240 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccC--cchhHHHHHhcCCceEEeeccc
Confidence 5999999999999999888555544 44443 57777722111100 011222223333333211
Q ss_pred -----------------------------CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccce-eeEEeeecc
Q 012132 140 -----------------------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV-LWWIHEMRG 189 (470)
Q Consensus 140 -----------------------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~ 189 (470)
.....+.+..+||+||+|...+..+... ..... ..|+ +.+.|....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~l-aA~la---gvpviv~~~h~~~~ 316 (578)
T PRK15490 241 GNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIAL-AALIA---GVPRIQLGLRGLPP 316 (578)
T ss_pred hhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHH-HHHhc---CCCEEEEeecccCC
Confidence 0122455679999999998654333221 11111 1234 444554322
Q ss_pred ccchhhhhc---------c-cccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHH
Q 012132 190 HYFKLDYVK---------H-LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREH 259 (470)
Q Consensus 190 ~~~~~~~~~---------~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~ 259 (470)
......... . ....+ .++.+..+++.+ .+.++++++++.|||||+|.+.|.+.... +..
T Consensus 317 ~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l----~~~lgip~~KI~VIyNGVD~~rf~p~~~~------~~~ 385 (578)
T PRK15490 317 VVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHY----ADWLKLEAKHFQVVYNGVLPPSTEPSSEV------PHK 385 (578)
T ss_pred cchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHH----HHHhCCCHHHEEEEeCCcchhhcCccchh------hHH
Confidence 211111100 0 11111 445555554444 34668899999999999999988764321 111
Q ss_pred HHH--HcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 260 VRE--SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 260 ~r~--~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
.|+ ..+++++.++++++||+.+.||++.+++++.++.+ +.|+++|+|+|+| +..++++++++++++
T Consensus 386 ~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk-------~~pdirLvIVGdG-----~~~eeLk~la~elgL 453 (578)
T PRK15490 386 IWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ-------HHPATRFVLVGDG-----DLRAEAQKRAEQLGI 453 (578)
T ss_pred HHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh-------HCCCeEEEEEeCc-----hhHHHHHHHHHHcCC
Confidence 222 23445667889999999999999999999988765 3489999999998 688999999999999
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHH
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 417 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la 417 (470)
.++|+|+|+.+++..+|+.+|+||+||. +|+||++++|||+||+|||+|+.||.+|+|.++.+|++++++| +++++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D--~~aLa 529 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQ--TVNLD 529 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCC--hhhHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999999998 88888
Q ss_pred HHH---HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 418 KNI---VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 418 ~~i---~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+++ ..+.++.+.+..++++++++++++|||+.|+++|.++|..
T Consensus 530 ~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 530 QACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 876 4445555556679999999999999999999999999975
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=339.97 Aligned_cols=365 Identities=19% Similarity=0.176 Sum_probs=262.6
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh------------------hhhhc
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH------------------KMWDR 132 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~------------------~~~~~ 132 (470)
|||++++.++.| ||.+.++..|+++|+++||+|.|+++..+............ .....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 799999999554 56699999999999999999999997655422110000000 00011
Q ss_pred ceeeEecCC------------------h-h---------hHH--hhcCCcEEEEcccchhhhHHHHhhhcCCccccceee
Q 012132 133 GVQVISAKG------------------Q-E---------TIN--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW 182 (470)
Q Consensus 133 ~~~~~~~~~------------------~-~---------~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (470)
|++++.... . + .+. ...+|||||+|+...+..... ++.......+|+++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~-l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPAL-LKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHH-HHhhccCCCCCEEE
Confidence 233221100 0 0 011 126899999998655443332 22211110257899
Q ss_pred EEeeeccc-cchhh-------------------------hhcccccccceeeeehhhHHHHHHhh-----hhhhccCCCc
Q 012132 183 WIHEMRGH-YFKLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLRIKMPD 231 (470)
Q Consensus 183 ~~h~~~~~-~~~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~ 231 (470)
++|+.... .+... ....+...+.++++|....+.+.... ...+..+..+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 99986421 11100 01123456777888877765554310 0011124578
Q ss_pred eEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 012132 232 TYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (470)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (470)
+.+|+||+|.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.++.+
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~- 318 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE- 318 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH-
Confidence 99999999999987653321 12233567899999986 67999999999999999999999998854
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
.+++|+|+|+|. +++.+++++++++++ +++.+.+.. +++..+|++||++++||. .|+||++++
T Consensus 319 --------~~~~lvi~G~g~---~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~l 383 (473)
T TIGR02095 319 --------LGGQLVVLGTGD---PELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQL 383 (473)
T ss_pred --------cCcEEEEECCCC---HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHH
Confidence 469999999984 246788888887764 567776643 456789999999999999 999999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecC------ceeeeecCCCCChHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcC
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs 446 (470)
|||+||+|||+++.||..|++.++ .+|+++++.| +++++++|.++++ +++.+++|++++++ +.||
T Consensus 384 EAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~---~~fs 458 (473)
T TIGR02095 384 YAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYD--PGALLAALSRALRLYRQDPSLWEALQKNAMS---QDFS 458 (473)
T ss_pred HHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCC
Confidence 999999999999999999999988 8999999998 9999999999988 89999999988763 6799
Q ss_pred hhHHHHHHHHHHHHH
Q 012132 447 EHHMAERIAVVLKEV 461 (470)
Q Consensus 447 ~~~~~~~~~~~~~~~ 461 (470)
|++++++|+++|+++
T Consensus 459 w~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 459 WDKSAKQYVELYRSL 473 (473)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999999999863
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=330.73 Aligned_cols=344 Identities=20% Similarity=0.202 Sum_probs=262.6
Q ss_pred cEEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChh--------
Q 012132 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-------- 143 (470)
Q Consensus 75 ~kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 143 (470)
|||+++++.++| ||.+.++.+|+++|.++ |+|.|++...... ...++.++......
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQRF------------DSEGLTVKGYRPWSELKEANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh------------cCCCeEEEEecChhhccchhhh
Confidence 799999999876 56689999999999987 7888877543211 12233333221100
Q ss_pred ---------hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------------chhhhhcccc
Q 012132 144 ---------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------FKLDYVKHLP 201 (470)
Q Consensus 144 ---------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------------~~~~~~~~~~ 201 (470)
......++|+||+|+........ .... . ...|++++.|+..... ........+.
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~-~~~~-~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAGH-LAKK-L--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIE 143 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHHH-HHHH-h--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHh
Confidence 01122479999999865443222 2211 1 1257888999864321 0011123345
Q ss_pred cccceeeeehhhHHHHHHhhhhhh-ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc
Q 012132 202 LVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (470)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~ 280 (470)
..+.+++.|....+.+.+ .+ +++..++.+||||+|.+.+.+.. +...+++++++++.++++++||+.
T Consensus 144 ~ad~vi~~S~~~~~~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~ 211 (388)
T TIGR02149 144 AADRVIAVSGGMREDILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRIT 211 (388)
T ss_pred hCCEEEEccHHHHHHHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccc
Confidence 677888888877666554 44 56678899999999998876532 345778889988889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEec-cc--CCHHHHHHh
Q 012132 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVN-KT--LTVAPYLAA 356 (470)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g-~~--~~~~~~~~~ 356 (470)
+.||++.+++|++++. ++++++++|+|... +++.+.+++.+.+++. .++|.+++ .. +++.++|+.
T Consensus 212 ~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 212 RQKGVPHLLDAVHYIP----------KDVQVVLCAGAPDT-PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred cccCHHHHHHHHHHHh----------hcCcEEEEeCCCCc-HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 9999999999998773 46889998876432 2356778888887765 34577764 33 789999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCCh------HHHHHHHHHHHhCHHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGI------TPLAKNIVKLATHVERR 430 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~------~~la~~i~~ll~~~~~~ 430 (470)
||++|+||. .|+||++++|||+||+|||+|+.||.+|++.++.+|++++++| . ++++++|.++++|++.+
T Consensus 281 aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~ 356 (388)
T TIGR02149 281 AEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINILLADPELA 356 (388)
T ss_pred CCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHHHhCHHHH
Confidence 999999999 8999999999999999999999999999999999999999988 7 89999999999999999
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+++++++++.+.++|||+.+++++.++|++++
T Consensus 357 ~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 357 KKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999863
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=327.65 Aligned_cols=353 Identities=20% Similarity=0.196 Sum_probs=254.2
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee-EecCC-------hhh---
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG-------QET--- 144 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~--- 144 (470)
||+++++.+..||.++++.++++.|.+.||+|++++....+............. .|..+ ++... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 78 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL--QGADIELSEEEKEIYLEWNEENAE 78 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh--cCCCCCCCHHHHHHHHHHHHHHhc
Confidence 689999988778889999999999999999999998654332211101111111 12222 11000 000
Q ss_pred -HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhh---hhcccccccceeeeehhhHHHHHHh
Q 012132 145 -INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD---YVKHLPLVAGAMIDSHVTAEYWKNR 220 (470)
Q Consensus 145 -~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (470)
.....+||+||+|++....+ ...... ...|++++.|.......... ..+.+...+.+++.+ .+..
T Consensus 79 ~~~~~~~~Dvv~~h~~~~~~~-~~~~~~----~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~--- 147 (372)
T cd03792 79 RPLLDLDADVVVIHDPQPLAL-PLFKKK----RGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYV--- 147 (372)
T ss_pred cccccCCCCEEEECCCCchhH-HHhhhc----CCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhc---
Confidence 12246899999998763222 211111 13568888997543222111 122233445555444 2221
Q ss_pred hhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHH
Q 012132 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300 (470)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~ 300 (470)
..+++..++ +||||+|.......... .......|+++|++++.++|+++||+.+.||++.+++|++.+.+
T Consensus 148 ---~~~~~~~~~-vipngvd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~--- 217 (372)
T cd03792 148 ---PPQVPPRKV-IIPPSIDPLSGKNRELS---PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE--- 217 (372)
T ss_pred ---CCCCCCceE-EeCCCCCCCccccCCCC---HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh---
Confidence 123444555 99999997531111000 11245678889998899999999999999999999999998855
Q ss_pred hhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc----CCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 301 ~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~----~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
+.++++|+|+|+|+..++...+.++++.+..++.++|.|+|.. +++..+|+++|++++||. .||||++++
T Consensus 218 ----~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~l 291 (372)
T cd03792 218 ----RVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVT 291 (372)
T ss_pred ----hCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHH
Confidence 3478999999998654333445566666677888899999864 678999999999999999 999999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
|||+||+|||+|+.+|..+++.++.+|+++++ .++++++|.++++|++.+++|++++++.+.++|||+.+++++.+
T Consensus 292 EA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 292 EALWKGKPVIAGPVGGIPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHHcCCCEEEcCCCCchhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999874 67889999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 012132 457 VLKEV 461 (470)
Q Consensus 457 ~~~~~ 461 (470)
+|+++
T Consensus 368 ~~~~~ 372 (372)
T cd03792 368 LISKL 372 (372)
T ss_pred HHHhC
Confidence 99863
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=331.10 Aligned_cols=369 Identities=17% Similarity=0.137 Sum_probs=264.5
Q ss_pred ccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchh---H--H---Hhh----hhh---------
Q 012132 74 SKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE---V--I---YSL----EHK--------- 128 (470)
Q Consensus 74 ~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~--~---~~~----~~~--------- 128 (470)
+|||+|++.+..| ||-.-++..|.++|+++||+|.|+.+........ . . ..+ ...
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 4899999999654 6669999999999999999999999765433211 0 0 000 000
Q ss_pred -hhhcceeeEecCC---------h--------------h---------hHHh--hcCCcEEEEcccchhhhHHHHhhhc-
Q 012132 129 -MWDRGVQVISAKG---------Q--------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKED- 172 (470)
Q Consensus 129 -~~~~~~~~~~~~~---------~--------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~- 172 (470)
....+++++.... . + .+.. ..+|||||+|+...+.....+....
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~ 164 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYA 164 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhh
Confidence 0001223321100 0 0 1111 2589999999855444332221111
Q ss_pred --CCccccceeeEEeeecccc-ch-----h----h--------------hhcccccccceeeeehhhHHHHHHhhhhhhc
Q 012132 173 --VPRVLPNVLWWIHEMRGHY-FK-----L----D--------------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (470)
Q Consensus 173 --~~~~~~~~~~~~h~~~~~~-~~-----~----~--------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (470)
......|++.|+|+..... +. . . ....+..++.++++|...++.+.......+|
T Consensus 165 ~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~g 244 (489)
T PRK14098 165 DHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFG 244 (489)
T ss_pred hccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcC
Confidence 0111368999999864211 00 0 0 0112345677888888887665431011133
Q ss_pred c------CCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHH
Q 012132 227 I------KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDL 287 (470)
Q Consensus 227 ~------~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ 287 (470)
+ ...++.+|+||+|.+.|.|..+.. .+...+..+++++|++. +.++|+++||+.++||++.
T Consensus 245 l~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~ 324 (489)
T PRK14098 245 LDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAEL 324 (489)
T ss_pred hHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHH
Confidence 3 267899999999999988764321 12234677889999974 5689999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccC
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~ 365 (470)
+++|+.++.+ ++++|+|+|+|+. ++++.+++++++++ ++|.|+|.. +++..+|++||++++||.
T Consensus 325 li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~a~aDi~l~PS~ 390 (489)
T PRK14098 325 LAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAIAGLDMLLMPGK 390 (489)
T ss_pred HHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHHHhCCEEEeCCC
Confidence 9999998854 5799999999842 36788999998874 789999975 457899999999999999
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCCcceeeec----CceeeeecCCCCChHHHHHHHHHHH---hCHHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN----GTTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGY 438 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~----~~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~a~ 438 (470)
.|+||++.+|||+||+|+|++++||+.|++.+ +.+|+++++.| +++|+++|.+++ +|++.+.++++++.
T Consensus 391 --~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~~~~~~~~~ 466 (489)
T PRK14098 391 --IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYT--PEALVAKLGEALALYHDEERWEELVLEAM 466 (489)
T ss_pred --CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 99999999999999999999999999998864 67999999998 999999999865 57887888776654
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
.+.|||++++++|+++|+++++
T Consensus 467 ---~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 467 ---ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred ---cCCCChHHHHHHHHHHHHHHhc
Confidence 4679999999999999999864
|
|
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=321.17 Aligned_cols=348 Identities=22% Similarity=0.262 Sum_probs=259.2
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--------cCChhhHHh
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------AKGQETINT 147 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 147 (470)
|||++++....||+++.+.++++.|.++||+|++++..+......... ......+.... ......+.+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPID----ATIILNLNMSKNPLSFLLALWKLRKILR 76 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhh----ccceEEecccccchhhHHHHHHHHHHHH
Confidence 589999888889999999999999999999999998544322111000 00000000000 011234456
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh-hhhcc-cccccceeeeehhhHHHHHHhhhhhh
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-DYVKH-LPLVAGAMIDSHVTAEYWKNRTRERL 225 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (470)
..+||+||+|......+.. +.+... ..++++.+.|+........ ...+. ....+..+..+... .+.+.+..
T Consensus 77 ~~~pdiv~~~~~~~~~~~~-l~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~~ 149 (360)
T cd04951 77 QFKPDVVHAHMFHANIFAR-LLRLFL--PSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEA----LDYFIASK 149 (360)
T ss_pred hcCCCEEEEcccchHHHHH-HHHhhC--CCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHH----HHHHHhcc
Confidence 6899999999865443322 222211 2357788888764321111 11111 11223333444444 33333344
Q ss_pred ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccc
Q 012132 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (470)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~ 305 (470)
.++.+++.+||||+|...+.+.... +...++++++++++++++++||+.+.||++.+++++.++.+ +
T Consensus 150 ~~~~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~-------~ 216 (360)
T cd04951 150 AFNANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS-------D 216 (360)
T ss_pred CCCcccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh-------h
Confidence 5677899999999998877654321 45578889998889999999999999999999999998865 4
Q ss_pred CCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
.|+++|+|+|+| +..+++++.++++++.++|.|+|+.+++..+|+.||++++||. .|++|++++|||++|+||
T Consensus 217 ~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 217 YLDIKLLIAGDG-----PLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPV 289 (360)
T ss_pred CCCeEEEEEcCC-----CcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCE
Confidence 478999999998 5678899999999998999999999999999999999999999 899999999999999999
Q ss_pred EecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 386 I~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|+++.|+..|++.+ +|++++++| +++++++|.++++ +++.+..++++ ++.+.+.|||+.++++|.++|+
T Consensus 290 I~~~~~~~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 290 VATDAGGVREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EEecCCChhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 99999999999965 789999988 9999999999995 56666777666 8888899999999999999996
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=328.91 Aligned_cols=347 Identities=23% Similarity=0.272 Sum_probs=255.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE--ec----CCh------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SA----KGQ------ 142 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~------ 142 (470)
||||++++++..||+++++.+|+++|.++||+|+++|...+.... .......++.+. .. ...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC------FEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc------chhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 799999999988999999999999999999999999964322110 001111112111 10 000
Q ss_pred ----h--------hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc------cchhhh--------
Q 012132 143 ----E--------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDY-------- 196 (470)
Q Consensus 143 ----~--------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------~~~~~~-------- 196 (470)
+ ......++|+||+++......+.... .+ .+++++.|..... +....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~---~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLF---SP---SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHh---cC---CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 0 02344789999998755433322111 11 4677888842211 111111
Q ss_pred hcccccccceeeeehhhHHHHHHhhhhhhcc-CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEE
Q 012132 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (470)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 275 (470)
...+...+.+++.|....+.+.+ .++. ...++.+|+||+|.+.|.+.... ..++....+++.+++++
T Consensus 149 ~~~~~~ad~ii~~s~~~~~~~~~----~~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~ 216 (392)
T cd03805 149 EFTTGMADKIVVNSNFTASVFKK----TFPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLS 216 (392)
T ss_pred HHHhhCceEEEEcChhHHHHHHH----HhcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEE
Confidence 12245667788888887766654 3332 33335699999999887654321 12233445567899999
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc---ChHHHHHHHHHHHh-cCCCCcEEEeccc--CC
Q 012132 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQ-KKIQDRVHFVNKT--LT 349 (470)
Q Consensus 276 vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~---~~~~~~~l~~~~~~-~~l~~~V~~~g~~--~~ 349 (470)
+||+.+.||++.+++|+.++.+... +.++++|+++|+|... ..++.+++++++++ +++.++|+|+|++ ++
T Consensus 217 ~grl~~~Kg~~~ll~a~~~l~~~~~----~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~ 292 (392)
T cd03805 217 INRFERKKNIALAIEAFAILKDKLA----EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQ 292 (392)
T ss_pred EeeecccCChHHHHHHHHHHHhhcc----cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHH
Confidence 9999999999999999999865211 0178999999988532 12356889999999 9999999999986 56
Q ss_pred HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHH
Q 012132 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 429 (470)
Q Consensus 350 ~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 429 (470)
+..+|+.||++++||. .|+||++++|||+||+|||+++.||..|++.++.+|+++++ | +++++++|.+++++++.
T Consensus 293 ~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 293 KELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-T--PEEFAEAMLKLANDPDL 367 (392)
T ss_pred HHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-C--HHHHHHHHHHHHhChHH
Confidence 7899999999999999 89999999999999999999999999999999999999976 6 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
++++++++++++.++|||+.+++++
T Consensus 368 ~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 368 ADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999999998764
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=340.46 Aligned_cols=380 Identities=16% Similarity=0.121 Sum_probs=266.5
Q ss_pred ccccccEEEEEeeccC-------C------CchhHHHHHHHHHHHhCC--ceEEEEecCCCCCc--hh---HHHhh----
Q 012132 70 SFMKSKLVLLVSHELS-------L------SGGPLLLMELAFLLRGVG--TKVNWITIQKPSEE--DE---VIYSL---- 125 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~-------~------~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~--~~---~~~~~---- 125 (470)
...++|.|++|+.... . ||-..++.+||++|+++| |+|+++|.....+. +. ....+
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRS 244 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccc
Confidence 3346789999986522 1 334689999999999998 89999995543211 00 00000
Q ss_pred -----hhhhhhcceeeEecC------Chh-----------------hHHh-------------hcCCcEEEEcccchhhh
Q 012132 126 -----EHKMWDRGVQVISAK------GQE-----------------TINT-------------ALKADLIVLNTAVAGKW 164 (470)
Q Consensus 126 -----~~~~~~~~~~~~~~~------~~~-----------------~~~~-------------~~~~DiV~~~~~~~~~~ 164 (470)
.......|+.+++.+ ... .+.+ ...||+||+|....+..
T Consensus 245 ~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~a 324 (1050)
T TIGR02468 245 SENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDS 324 (1050)
T ss_pred cccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHH
Confidence 011112355554432 000 1100 01499999997665544
Q ss_pred HHHHhhhcCCccccceeeEEeeeccccc------------------h--hh---hhcccccccceeeeehhhHHHHHHhh
Q 012132 165 LDAVLKEDVPRVLPNVLWWIHEMRGHYF------------------K--LD---YVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~------------------~--~~---~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
...+... ...|++.|.|.....-. . .. ....+..++.+++.+....+.....+
T Consensus 325 a~~L~~~----lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY 400 (1050)
T TIGR02468 325 AALLSGA----LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLY 400 (1050)
T ss_pred HHHHHHh----hCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHh
Confidence 3333322 22579999996421100 0 00 12234566777777776665432211
Q ss_pred ------------------hhhhccCCCceEEEecCCchhhhhHhhhHHHHH-------------HHHHHHHHHcCCCCCC
Q 012132 222 ------------------RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR-------------VLREHVRESLGVRNED 270 (470)
Q Consensus 222 ------------------~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~-------------~~~~~~r~~~~~~~~~ 270 (470)
...||...+++.|||||+|.+.|.|........ .....++. +..++++
T Consensus 401 ~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdk 479 (1050)
T TIGR02468 401 DGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRK 479 (1050)
T ss_pred ccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCC
Confidence 001233345899999999999998753221100 00123333 3445778
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc------ChHHHHHHHHHHHhcCCCCcEEEe
Q 012132 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFV 344 (470)
Q Consensus 271 ~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~------~~~~~~~l~~~~~~~~l~~~V~~~ 344 (470)
++|+++||+.+.||++.+|+|+..+.+.. ..+++. +|+|+++.. ..++...++++++++++.++|.|+
T Consensus 480 pvIL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~Fl 553 (1050)
T TIGR02468 480 PMILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYP 553 (1050)
T ss_pred cEEEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEec
Confidence 89999999999999999999999885421 125666 466875321 123457788999999999999999
Q ss_pred ccc--CCHHHHHHhc----CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHH
Q 012132 345 NKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 345 g~~--~~~~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (470)
|+. +++..+|+.| |+||+||. .|+||++++||||||+|||+|+.||+.|++.++.+|+++++.| +++|++
T Consensus 554 G~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D--~eaLA~ 629 (1050)
T TIGR02468 554 KHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHD--QQAIAD 629 (1050)
T ss_pred CCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCC--HHHHHH
Confidence 974 8899999988 69999999 9999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+|.++++|++.+++|++++++.+. +|+|+.++++|++.|..+....
T Consensus 630 AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 630 ALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999985 5999999999999999987544
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=317.40 Aligned_cols=339 Identities=17% Similarity=0.263 Sum_probs=251.5
Q ss_pred cEEEEEeec-cC--C---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcc--eeeEecCC-----
Q 012132 75 KLVLLVSHE-LS--L---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVISAKG----- 141 (470)
Q Consensus 75 ~kIl~v~~~-~~--~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----- 141 (470)
.||+++++. ++ + ||+|+++..+++.|. ++|+++|...+..... + ....| +..++...
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~ 72 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEY-----T--KVNDNCDIHYIGFSRIYKRL 72 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCch-----h--hccCCCceEEEEeccccchh
Confidence 577777665 33 3 555999999999994 3999999544431110 0 11112 22221111
Q ss_pred ------------hhhH---H---hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccc
Q 012132 142 ------------QETI---N---TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLV 203 (470)
Q Consensus 142 ------------~~~~---~---~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 203 (470)
...+ . ...++|+||+|+..... ..+....+. .+++.++|+.... ..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~---~~~~~~~~~--~~~v~~~h~~~~~-------~~~~~~ 140 (380)
T PRK15484 73 FQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY---RQIRERAPQ--AKLVMHMHNAFEP-------ELLDKN 140 (380)
T ss_pred hhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH---HHHHhhCCC--CCEEEEEecccCh-------hHhccC
Confidence 0111 1 12569999999854221 112222221 4778888865211 112345
Q ss_pred cceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC
Q 012132 204 AGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK 283 (470)
Q Consensus 204 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K 283 (470)
+.+++.|....+.+.+ . .+..++.+||||+|.+.|.+.. ...++++++++.+..+++++||+.+.|
T Consensus 141 ~~ii~~S~~~~~~~~~----~--~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~K 206 (380)
T PRK15484 141 AKIIVPSQFLKKFYEE----R--LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPDK 206 (380)
T ss_pred CEEEEcCHHHHHHHHh----h--CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCcccc
Confidence 6778888777665543 2 3556799999999998876532 234677888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc----ChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhc
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~----~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~a 357 (470)
|++.+++|+.++.+ ++|+++|+|+|+|... ...+.+.+++++++++ ++|.|+|++ +++.++|++|
T Consensus 207 g~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~a 277 (380)
T PRK15484 207 GILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLA 277 (380)
T ss_pred CHHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhC
Confidence 99999999998865 4589999999987532 2235667777777765 589999986 6899999999
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceee-eecCCCCChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPVGKEGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~-l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
|++|+||. +.|+||++++|||+||+|||+|+.||++|++.++.+|+ ++++.| +++++++|.++++|++. .+++++
T Consensus 278 Dv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~-~~~~~~ 353 (380)
T PRK15484 278 DLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL-TQIAEQ 353 (380)
T ss_pred CEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH-HHHHHH
Confidence 99999997 35999999999999999999999999999999999999 567777 99999999999999985 789999
Q ss_pred HHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 437 GYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 437 a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+++.+.++|||++++++++++|++.+
T Consensus 354 ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 354 AKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
|
|
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=318.27 Aligned_cols=336 Identities=21% Similarity=0.243 Sum_probs=260.1
Q ss_pred eccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--------------ChhhHHh
Q 012132 82 HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------GQETINT 147 (470)
Q Consensus 82 ~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 147 (470)
+.+..||+++++.+++++|.++||+|.+++..... ...+...++.++... ......+
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGRL---------VAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIR 75 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch---------HHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHH
Confidence 44666899999999999999999999999864321 112223344332221 1123445
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhcc
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 227 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 227 (470)
..+||+||+|+.........+... ...|+++++|+...... .+...+...+.+++.|....+.+. +.+++
T Consensus 76 ~~~~dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~--~~~~~~~~~~~vi~~s~~~~~~~~----~~~~~ 145 (355)
T cd03819 76 EEKVDIVHARSRAPAWSAYLAARR----TRPPFVTTVHGFYSVNF--RYNAIMARGDRVIAVSNFIADHIR----ENYGV 145 (355)
T ss_pred HcCCCEEEECCCchhHHHHHHHHh----cCCCEEEEeCCchhhHH--HHHHHHHhcCEEEEeCHHHHHHHH----HhcCC
Confidence 689999999986544332222211 13678889997643321 233344567788888877766655 36788
Q ss_pred CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC
Q 012132 228 KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307 (470)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 307 (470)
+..++.+||||+|.+.+.+..... .....+|++++.+++.++++++||+.+.||++.+++++..+.+ +.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~~ 215 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DDP 215 (355)
T ss_pred ChhhEEEecCCccccccCccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cCC
Confidence 888999999999998876543211 1123367888888888999999999999999999999998865 347
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 387 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (470)
+++++|+|.+.... .+.+.+.+.++++++.++|+|+|+.+++..+|+.||++++||. +.|++|++++|||++|+|||+
T Consensus 216 ~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~-~~e~~~~~l~EA~a~G~PvI~ 293 (355)
T cd03819 216 DVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSAST-EPEAFGRTAVEAQAMGRPVIA 293 (355)
T ss_pred CeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCC-CCCCCchHHHHHHhcCCCEEE
Confidence 89999999985432 3566677888889998999999999999999999999999993 289999999999999999999
Q ss_pred cCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHH
Q 012132 388 TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHM 450 (470)
Q Consensus 388 s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~ 450 (470)
++.|+..|++.++.+|++++++| +++++++|..++. +++.+.++++++++.+.++|+|+.|
T Consensus 294 ~~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 294 SDHGGARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred cCCCCcHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 99999999999988999999988 9999999975555 8999999999999999999999864
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=315.66 Aligned_cols=345 Identities=23% Similarity=0.300 Sum_probs=268.7
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC------------Chh
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------GQE 143 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 143 (470)
||+++.+.+.+||+++++..++++|.+.||+|.+++...... ....+...++.++... ...
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-------LGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-------hhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 699999999999999999999999999999999998654321 1222223455443321 112
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---chhh----hhcccccccceeeeehhhHHH
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FKLD----YVKHLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~----~~~~~~~~~~~~~~s~~~~~~ 216 (470)
.+.+..+||+||++......+....... . ..++++++.|+..... .... ........+..++.+....+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 150 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARL-A--GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY 150 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHh-c--CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH
Confidence 3445689999999875543332222211 1 2257888888865442 1111 112223445556666666555
Q ss_pred HHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
+. .++++..++.+++||+|...+.+.... ....+++++++++.++++++|++.+.||++.+++++..+.
T Consensus 151 ~~-----~~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 151 HQ-----AIGYPPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred HH-----HcCCChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 54 336777889999999999877654322 3456788999888999999999999999999999999886
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH-hcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
+ +.++++|+++|.+. ....++.... ++++.++|.++|..+++..+|+.||++++||. .|++|+++
T Consensus 220 ~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~ 285 (365)
T cd03807 220 K-------KFPNARLLLVGDGP-----DRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVL 285 (365)
T ss_pred H-------hCCCeEEEEecCCc-----chhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHH
Confidence 5 34889999999983 4455566665 78888999999999999999999999999999 89999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+|||+||+|||+++.|+..|++.+ +|++++++| +++++++|.+++++++.+.++++++++++.++|||+++++++.
T Consensus 286 ~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 361 (365)
T cd03807 286 LEAMACGLPVVATDVGDNAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE 361 (365)
T ss_pred HHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999966 899999988 9999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012132 456 VVLK 459 (470)
Q Consensus 456 ~~~~ 459 (470)
++|+
T Consensus 362 ~~y~ 365 (365)
T cd03807 362 ELYR 365 (365)
T ss_pred HHhC
Confidence 9984
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=328.42 Aligned_cols=364 Identities=20% Similarity=0.161 Sum_probs=261.0
Q ss_pred EEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh------------------hhhhcc
Q 012132 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH------------------KMWDRG 133 (470)
Q Consensus 76 kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~------------------~~~~~~ 133 (470)
||++++.++.| ||.+.++..|+++|+++||+|.|+++..+............ .....|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 69999998543 66699999999999999999999997655322111000000 001124
Q ss_pred eeeEecCCh------------------------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhc--CCccccc
Q 012132 134 VQVISAKGQ------------------------------ETINT--ALKADLIVLNTAVAGKWLDAVLKED--VPRVLPN 179 (470)
Q Consensus 134 ~~~~~~~~~------------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~~~~ 179 (470)
++++..... ..+.. ..+||+||+|+...+.....+.... ......+
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 444322110 01112 2799999999866544333322221 0112368
Q ss_pred eeeEEeeecccc-chh--------------------------hhhcccccccceeeeehhhHHHHHHh-----hhhhhcc
Q 012132 180 VLWWIHEMRGHY-FKL--------------------------DYVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRI 227 (470)
Q Consensus 180 ~~~~~h~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~ 227 (470)
+++++|+..... +.. .....+...+.++++|....+.+.+. +...+..
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 999999864211 000 01112345677788887776655431 1112233
Q ss_pred CCCceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCC--CCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 228 KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
...++.+|+||+|.+.|.+..+.. .+...+..+++++|++ ++.++|+++||+.++||++.+++|+.+
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 567899999999999988754332 1234467789999985 678999999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEe-ccc-CCHHHHHHhcCEEEEccCCcccccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKT-LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~~-~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+ .+++|+|+|+|.+ ++.+.++++++++ .+++.+. |.. +.+..+|+.||++++||. .|+||
T Consensus 321 l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~g 384 (476)
T cd03791 321 LLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCG 384 (476)
T ss_pred HHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCc
Confidence 855 4599999999832 4667888888776 4577765 454 445789999999999999 89999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCc------eeeeecCCCCChHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGT------TGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~ 443 (470)
++++|||+||+|||+++.||+.|++.++. +|+++++.| +++++++|.++++ +++.+.++++++++ +
T Consensus 385 l~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~ 459 (476)
T cd03791 385 LTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRRALALYRDPEAWRKLQRNAMA---Q 459 (476)
T ss_pred HHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHHHhc---c
Confidence 99999999999999999999999999987 999999998 9999999999885 67777777777654 5
Q ss_pred HcChhHHHHHHHHHHHH
Q 012132 444 IFQEHHMAERIAVVLKE 460 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~ 460 (470)
.|||+.++++|+++|++
T Consensus 460 ~fsw~~~a~~~~~~y~~ 476 (476)
T cd03791 460 DFSWDRSAKEYLELYRS 476 (476)
T ss_pred CCChHHHHHHHHHHHhC
Confidence 69999999999999963
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=324.46 Aligned_cols=372 Identities=17% Similarity=0.177 Sum_probs=253.6
Q ss_pred ccccEEEEEeeccC---C-------Cch-hHHHHHHHHHH--------HhCCc----eEEEEecCCCCCchh-HHHhhhh
Q 012132 72 MKSKLVLLVSHELS---L-------SGG-PLLLMELAFLL--------RGVGT----KVNWITIQKPSEEDE-VIYSLEH 127 (470)
Q Consensus 72 ~~~~kIl~v~~~~~---~-------~G~-~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~-~~~~~~~ 127 (470)
.|.|||++++.... . .|| ..++.+++++| +++|| +|+|+|...+..... ....++.
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 35689999998762 1 344 68999999975 68999 777999544321110 0000111
Q ss_pred hhhhcceeeEecC--C---------h-----------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccc
Q 012132 128 KMWDRGVQVISAK--G---------Q-----------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (470)
Q Consensus 128 ~~~~~~~~~~~~~--~---------~-----------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (470)
.....++.+++.+ . . +.+.. ..+||+||+|....+... ..++... .
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva-~lla~~l---g 408 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA-SLLARKL---G 408 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH-HHHHHhc---C
Confidence 1112344443321 0 0 01111 247999999986655443 3333222 2
Q ss_pred cceeeEEeeeccc-------cch---hh---------hhcccccccceeeeehhhHHHHHHhhh-----------hhh--
Q 012132 178 PNVLWWIHEMRGH-------YFK---LD---------YVKHLPLVAGAMIDSHVTAEYWKNRTR-----------ERL-- 225 (470)
Q Consensus 178 ~~~~~~~h~~~~~-------~~~---~~---------~~~~~~~~~~~~~~s~~~~~~~~~~~~-----------~~~-- 225 (470)
.|.+.+.|..... ++. .. ....+..++.+++.+..-.....+... .-+
T Consensus 409 VP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~v 488 (784)
T TIGR02470 409 VTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRV 488 (784)
T ss_pred CCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeee
Confidence 5777788854210 010 00 112234456666666422111011100 011
Q ss_pred --cc--CCCceEEEecCCchhhhhHhhhHHHHHH-----------HHHHHHHHcCC--CCCCeEEEEEeecccCCCHHHH
Q 012132 226 --RI--KMPDTYVVHLGNSKELMEVAEDNVAKRV-----------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 226 --~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~~-----------~~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
|+ +.+|+.|||+|+|.+.|.|......+.. .+.+.++.+|+ ++++++|+++||+.+.||++.+
T Consensus 489 vnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~L 568 (784)
T TIGR02470 489 VHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGL 568 (784)
T ss_pred ecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHH
Confidence 22 5678999999999998876543211100 12334577776 5677899999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCc----Ch---HHHHHHHHHHHhcCCCCcEEEeccc---CCHHHHHH---
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QT---KFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA--- 355 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~----~~---~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~--- 355 (470)
++|+.++.+ + .++++|+|+|++... +. ...+++.++++++++.++|.|+|.+ .++.++|+
T Consensus 569 IeA~~~l~~-l------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 569 VECYGRSPK-L------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred HHHHHHhHh-h------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 999987643 1 157899999986421 11 2456788899999999999999964 45556664
Q ss_pred -hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHH----hCHHHH
Q 012132 356 -AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERR 430 (470)
Q Consensus 356 -~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~ 430 (470)
.+|+||+||. +|+||++++|||+||+|||+|+.||+.|+|.++.+|+++++.| +++++++|.+++ .|++.+
T Consensus 642 d~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kll~dp~~~ 717 (784)
T TIGR02470 642 DTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKCDEDPSYW 717 (784)
T ss_pred ccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 3479999999 9999999999999999999999999999999999999999999 999999999876 589999
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+++++++++++.++|||+.++++++++.
T Consensus 718 ~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 718 QKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999998775
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=319.60 Aligned_cols=334 Identities=18% Similarity=0.209 Sum_probs=238.9
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh-------------
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------- 142 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 142 (470)
||||++..+|. ....|+++|.++||+|+++|......... |+.++.....
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~ 63 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPPG------------GVRVVRYRPPRGPTSGTHPYLRE 63 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCCC------------CeeEEEecCCCCCCCCCCccchh
Confidence 68999988862 46789999999999999999665532111 3333322110
Q ss_pred ---------------hhH-HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEE------eeeccccc----h---
Q 012132 143 ---------------ETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI------HEMRGHYF----K--- 193 (470)
Q Consensus 143 ---------------~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~~~~~----~--- 193 (470)
..+ .+..+||+||+|..+..... ++...+. .+++.+. |+....+. .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~---l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396)
T cd03818 64 FEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLF---LKDVWPD--APLIGYFEFYYRAEGADVGFDPEFPPSLD 138 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhh---HHHhCCC--CCEEEEEeeeecCCCCCCCCCCCCCCchh
Confidence 011 23368999999986543222 2222221 2333322 22111110 0
Q ss_pred --hh-------hhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHc
Q 012132 194 --LD-------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (470)
Q Consensus 194 --~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (470)
.. ....+...+.+++.|....+.+.+ .+ .+++.|||||+|.+.|.+.+.. ....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~----~~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~ 205 (396)
T cd03818 139 DALRLRNRNALILLALAQADAGVSPTRWQRSTFPA----EL---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGR 205 (396)
T ss_pred HHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcH----hh---ccceEEeCCCccccccCCCchh------hhcccccc
Confidence 01 112355677788887777665443 22 2679999999999988765321 11223333
Q ss_pred CCCCCCeEEEEEee-cccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC---hHH-HHHHHHHHHhcCC--
Q 012132 265 GVRNEDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---TKF-ESELRNYVMQKKI-- 337 (470)
Q Consensus 265 ~~~~~~~~i~~vGr-l~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~---~~~-~~~l~~~~~~~~l-- 337 (470)
+++++.++++++|| +.+.||++.+++|++.+.+ +.|+++|+|+|++.+.. ++. ....+++.++++.
T Consensus 206 ~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 206 VLTPGDEVITFVARNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred cCCCCCeEEEEECCCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 45567788999998 9999999999999998865 45899999999753110 000 1122223333332
Q ss_pred -CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChH
Q 012132 338 -QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414 (470)
Q Consensus 338 -~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (470)
.++|+|+|++ +++..+|+.||++++||. .|++|++++||||||+|||+|+.||..|++.++.+|++++++| ++
T Consensus 279 ~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d--~~ 354 (396)
T cd03818 279 DLSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFD--PD 354 (396)
T ss_pred CcceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCC--HH
Confidence 4789999986 689999999999999999 9999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 415 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 415 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+++++|.++++|++.+.+|++++++++.++|||+.++++|.
T Consensus 355 ~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 355 ALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999999999999999999999886
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=314.71 Aligned_cols=342 Identities=12% Similarity=0.142 Sum_probs=245.3
Q ss_pred cEEEEEeeccC-CCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhh--hhhhcceeeEe----cCChhhH
Q 012132 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEH--KMWDRGVQVIS----AKGQETI 145 (470)
Q Consensus 75 ~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~ 145 (470)
|||+++++.++ .||+|+++.+++++|.++ ||+|.+++......... ...... ......+.... ......+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAW-LKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHH-HHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 79999998765 488899999999999999 89999988654422111 000000 00000111110 1123355
Q ss_pred HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhh
Q 012132 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (470)
.+..+||+||+|++....+... ..... ....+++.+.|......... ....+...+.+++.|..+.+.+. .+
T Consensus 80 l~~~~~Dii~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~h~~~~~~~~~-~~~~~~~~d~~i~~S~~~~~~~~-----~~ 151 (359)
T PRK09922 80 LKETQPDIVICIDVISCLYANK-ARKKS-GKQFKIFSWPHFSLDHKKHA-ECKKITCADYHLAISSGIKEQMM-----AR 151 (359)
T ss_pred HHhcCCCEEEEcCHHHHHHHHH-HHHHh-CCCCeEEEEecCcccccchh-hhhhhhcCCEEEEcCHHHHHHHH-----Hc
Confidence 6778999999998655433222 22211 11124555666432111111 11223566778888877766554 34
Q ss_pred ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc--cCCCHHHHHHHHHHHHHHHHhhc
Q 012132 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS--RGKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~--~~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
+++.+++.+||||+|.+.+..... -..++++++++||+. +.||++.+++++.++.
T Consensus 152 ~~~~~ki~vi~N~id~~~~~~~~~----------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------- 208 (359)
T PRK09922 152 GISAQRISVIYNPVEIKTIIIPPP----------------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------- 208 (359)
T ss_pred CCCHHHEEEEcCCCCHHHccCCCc----------------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC-------
Confidence 677788999999999765432110 013467899999996 4699999999998762
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC----CHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL----TVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~----~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
++++|+|+|+| +..+.++++++++++.++|+|+|+++ ++.++|+.+|++|+||. .|+||++++|||
T Consensus 209 ---~~~~l~ivG~g-----~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAm 278 (359)
T PRK09922 209 ---GEWQLHIIGDG-----SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAM 278 (359)
T ss_pred ---CCeEEEEEeCC-----ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHH
Confidence 47999999999 56888999999999999999999864 46777888999999999 999999999999
Q ss_pred hcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 380 AFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 380 a~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
|||+|||+++ .||..|++.++.+|++++++| +++++++|.++++|++.+. .++.....++|+.+++.+++.++|
T Consensus 279 a~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 353 (359)
T PRK09922 279 SYGIPCISSDCMSGPRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLYFKNLNNAL 353 (359)
T ss_pred HcCCCEEEeCCCCChHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999 899999999999999999998 9999999999999987541 233333445588899999999999
Q ss_pred HHHHH
Q 012132 459 KEVLK 463 (470)
Q Consensus 459 ~~~l~ 463 (470)
..+++
T Consensus 354 ~~~~~ 358 (359)
T PRK09922 354 FSKLQ 358 (359)
T ss_pred HHHhc
Confidence 98764
|
|
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=312.22 Aligned_cols=331 Identities=20% Similarity=0.206 Sum_probs=254.8
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee-----------------Ee
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----------------IS 138 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 138 (470)
||+++++.+.+. +++++.++++.|. ||+|++++.......... ....++.. ..
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPLG-------ALAVRLADLAGGKAGLRLGALRLLTGS 70 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCCc-------ccceeeeecccchhHHHHHHHHhcccc
Confidence 578888877665 7899999999995 788888875433221100 00111111 11
Q ss_pred cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc------------hhhhhcccccccce
Q 012132 139 AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGA 206 (470)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------------~~~~~~~~~~~~~~ 206 (470)
......+.+..+||+||+|....+.....+.+. ...|++++.|+...... .......+...+.+
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 146 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALF 146 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEE
Confidence 122233466789999999976544443333322 22578888886432111 11122334566788
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
++.|....+.+.+ ++++..++.+++||+|.+.+.+... ..++.+++++|++.+.||++
T Consensus 147 i~~s~~~~~~~~~-----~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~K~~~ 204 (367)
T cd05844 147 IAVSQFIRDRLLA-----LGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEKKGPL 204 (367)
T ss_pred EECCHHHHHHHHH-----cCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccccChH
Confidence 8888877666553 3677788999999999887754321 14567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
.+++|+..+.+ +.++++|+|+|+| ++.++++++++++++.++|+|+|++ +++..+|+.+|++++||
T Consensus 205 ~li~a~~~l~~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps 272 (367)
T cd05844 205 LLLEAFARLAR-------RVPEVRLVIIGDG-----PLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPS 272 (367)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEEeCc-----hHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECc
Confidence 99999998865 3489999999998 6788999999999999999999986 77999999999999999
Q ss_pred CC----cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 365 QA----WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 365 ~~----~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
.. ..|+||++++|||+||+|||+++.++..|++.++.+|++++++| +++++++|.++++|++.+.+++++++++
T Consensus 273 ~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 273 VTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred ccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 61 14999999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HHHHcChhHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAV 456 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~ 456 (470)
+.++|||+.+++++.+
T Consensus 351 ~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 351 VEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHCCHHHHHHHHhc
Confidence 9999999999999875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=309.25 Aligned_cols=329 Identities=17% Similarity=0.184 Sum_probs=248.3
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-----------Chhh
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----------GQET 144 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 144 (470)
||+++++.+..||+++++.+++++|.+.||+|++++....... ........++.++... ....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGD------YDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcc------hHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 6999999887788899999999999999999999996554321 1222333455444221 1123
Q ss_pred HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--hhh------hhcccccccceeeeehhhHHH
Q 012132 145 INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD------YVKHLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~~~------~~~~~~~~~~~~~~s~~~~~~ 216 (470)
+.+..+||+||+|......+.....+. . ..+..+.+.|+...... ... ........+.+++.+....+.
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKK-A--GVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhh-C--CCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 345689999999987643333322222 1 11344566776432211 111 112234556677777776655
Q ss_pred HHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
+.. . ....++.+||||+|.+.+.+.... +.. +++.+...++++|+++||+.+.||++.+++|+..+.
T Consensus 152 ~~~----~--~~~~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 152 LFG----K--VKNKKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred HHh----C--CCcccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 543 2 456789999999999887654321 112 566777788899999999999999999999999986
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
+ +.++++++|+|+| +..+.+++.++++++.++|.++|+.+++.++|+.||++|+||. .|++|++++
T Consensus 219 ~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~l 284 (358)
T cd03812 219 K-------KNPNAKLLLVGDG-----ELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVLI 284 (358)
T ss_pred H-------hCCCeEEEEEeCC-----chHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHHH
Confidence 5 4589999999998 5778899999999999999999999999999999999999999 899999999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
|||++|+|||+|+.||..|++.+ ..|++..+++ +++++++|.++++|++.++.++..+......
T Consensus 285 EAma~G~PvI~s~~~~~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 285 EAQASGLPCILSDTITKEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGLDA 348 (358)
T ss_pred HHHHhCCCEEEEcCCchhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccchh
Confidence 99999999999999999999987 4667766666 8999999999999999999888877765543
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=308.51 Aligned_cols=326 Identities=21% Similarity=0.219 Sum_probs=249.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
||||++++....||+++++..++++|.++||+|++++.... .........+||+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 79999998766688899999999999999999999995533 12223446799999
Q ss_pred EEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------------------------------hhhh---ccc-
Q 012132 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------------------------LDYV---KHL- 200 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------------------------------~~~~---~~~- 200 (470)
|+|......+....+.... ...|+++++|+....... ..+. ..+
T Consensus 56 h~~~~~~~~~~~~~~~~~~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLL--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWA 133 (365)
T ss_pred EEEccccCccCHHHHHHHH--cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhc
Confidence 9987543332222222111 125788999975321100 0000 000
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~ 280 (470)
.....+++.+....+.+. +.+.++..++.++|||+|.+.+.+.. +...++.++++.+..++++.|+..
T Consensus 134 ~~~~~~v~~s~~~~~~~~----~~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~ 201 (365)
T cd03825 134 DLNLTIVAPSRWLADCAR----SSSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGG 201 (365)
T ss_pred cCCcEEEehhHHHHHHHH----hccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCC
Confidence 112334555555444433 34456778999999999998875543 345677788888888887777775
Q ss_pred c--CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC---CHHHHHH
Q 012132 281 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLA 355 (470)
Q Consensus 281 ~--~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~---~~~~~~~ 355 (470)
. .||++.++++++.+.+. ..++++++++|++.. ... .++.++|.++|+.. ++..+|+
T Consensus 202 ~~~~K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~~-----~~~-------~~~~~~v~~~g~~~~~~~~~~~~~ 263 (365)
T cd03825 202 TDPRKGFDELIEALKRLAER------WKDDIELVVFGASDP-----EIP-------PDLPFPVHYLGSLNDDESLALIYS 263 (365)
T ss_pred CccccCHHHHHHHHHHhhhc------cCCCeEEEEeCCCch-----hhh-------ccCCCceEecCCcCCHHHHHHHHH
Confidence 5 89999999999987541 137899999999832 111 14567899999864 6889999
Q ss_pred hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
.||++++||. .|+||++++|||++|+|||+++.|+..|++.++.+|++++..| +++++++|.++++|++.+.++++
T Consensus 264 ~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~ 339 (365)
T cd03825 264 AADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGE 339 (365)
T ss_pred hCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999 8999999999999999999999999999999988999999988 99999999999999999999999
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 436 RGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 436 ~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++++.+.++|||++++++|.++|+++
T Consensus 340 ~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 340 AARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999863
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=311.71 Aligned_cols=348 Identities=22% Similarity=0.218 Sum_probs=256.6
Q ss_pred EEEEEeeccC--CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC------------
Q 012132 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (470)
Q Consensus 76 kIl~v~~~~~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 141 (470)
++++.+...+ .||.++++.+|+++|+++||+|+|++.......... .....++.++....
T Consensus 8 ~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (398)
T cd03800 8 HGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI------VELAPGVRVVRVPAGPAEYLPKEELW 81 (398)
T ss_pred cccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc------cccccceEEEecccccccCCChhhcc
Confidence 3444443333 267799999999999999999999995443221100 01112333322110
Q ss_pred ---------hhhHHhhc--CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh--------------hh
Q 012132 142 ---------QETINTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL--------------DY 196 (470)
Q Consensus 142 ---------~~~~~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~--------------~~ 196 (470)
.....+.. +||+||+|....+.....+.+. ...|++++.|+........ ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (398)
T cd03800 82 PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAE 157 (398)
T ss_pred hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHH
Confidence 01122334 9999999975544333222221 1256778888753211100 01
Q ss_pred hcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEE
Q 012132 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v 276 (470)
...+...+.+++.|....+.+.+ .++.+..++.+||||+|.+.+.+.... ...++.++.+.++++|+++
T Consensus 158 ~~~~~~ad~ii~~s~~~~~~~~~----~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~ 226 (398)
T cd03800 158 ERLLRAADRVIASTPQEAEELYS----LYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAV 226 (398)
T ss_pred HHHHhhCCEEEEcCHHHHHHHHH----HccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEE
Confidence 22344567777777776555543 445556679999999999887654322 1125556666788999999
Q ss_pred eecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh-HHHHHHHHHHHhcCCCCcEEEeccc--CCHHHH
Q 012132 277 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 353 (470)
Q Consensus 277 Grl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~-~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~ 353 (470)
||+.+.||++.+++|+..+.+ +.++++++++|++..... .....++++++++++.++|.|+|++ +++..+
T Consensus 227 gr~~~~k~~~~ll~a~~~l~~-------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 299 (398)
T cd03800 227 GRLDPRKGIDTLIRAYAELPE-------LRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPAL 299 (398)
T ss_pred cccccccCHHHHHHHHHHHHH-------hCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHH
Confidence 999999999999999998865 347899999998854322 2345678888999999999999986 689999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHH
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 433 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 433 (470)
|+.||++++||. .|++|++++|||++|+|||+++.+|..|++.++++|++++++| +++++++|.++++|++.++++
T Consensus 300 ~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~ 375 (398)
T cd03800 300 YRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRL 375 (398)
T ss_pred HHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999 8999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHHcChhHHHHHHH
Q 012132 434 GKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 434 ~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
++++++++.++|||+.++++|+
T Consensus 376 ~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 376 SRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999999886
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=304.08 Aligned_cols=352 Identities=16% Similarity=0.141 Sum_probs=250.9
Q ss_pred ccEEEEEeeccCCC-chhHHHHHHHHHHHhCCc--eEEEEecCCCCCchhHHHhhhhhhhhcce------eeEec---C-
Q 012132 74 SKLVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISA---K- 140 (470)
Q Consensus 74 ~~kIl~v~~~~~~~-G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~- 140 (470)
+++|+|++++...| |||+++.+.+.+|.+.|+ +|+++|.+.+....+. +.......++ .++.. .
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~---l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSL---AARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHH---HHHHHhhcceecCCCceEEEeccccc
Confidence 56999999999876 779999999999999998 7788886654433221 1111122333 11111 0
Q ss_pred ----Ch----------h------hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------
Q 012132 141 ----GQ----------E------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------- 191 (470)
Q Consensus 141 ----~~----------~------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------- 191 (470)
.+ + .......|| |++.+...+.... +++. . ..++++++|......
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~p-l~~~-~---~~~v~~yvH~p~~~~dm~~~v~~~ 183 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYP-LARL-F---GCKVVCYTHYPTISSDMISRVRDR 183 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHH-HHHh-c---CCcEEEEEeCCcchHHHHHHHhhc
Confidence 00 0 111123555 5554432111111 1111 1 258899999432110
Q ss_pred ------------------chhhhh--------cccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhh
Q 012132 192 ------------------FKLDYV--------KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 245 (470)
Q Consensus 192 ------------------~~~~~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~ 245 (470)
.+..+. ......+.++++|..+.+.+.+ .++. .+++.+++||+|.+.+.
T Consensus 184 ~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~----~~~~-~~~i~vvyp~vd~~~~~ 258 (463)
T PLN02949 184 SSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA----LWRI-PERIKRVYPPCDTSGLQ 258 (463)
T ss_pred ccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH----HcCC-CCCeEEEcCCCCHHHcc
Confidence 001111 1124567788888888776654 3333 35789999999987653
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-ChHH
Q 012132 246 VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKF 324 (470)
Q Consensus 246 ~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~-~~~~ 324 (470)
..+. ..+.+...++++||+.++||++.+++|++++.+.+.+ +.++++|+|+|++... +.++
T Consensus 259 ~~~~---------------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~ 320 (463)
T PLN02949 259 ALPL---------------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEER 320 (463)
T ss_pred cCCc---------------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHH
Confidence 2110 0113456789999999999999999999988654432 2378999999997432 2346
Q ss_pred HHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcc-eeeec--
Q 012132 325 ESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN-- 399 (470)
Q Consensus 325 ~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~-e~v~~-- 399 (470)
.+++++++++++++++|+|+|+. +++.++|+.||++++||. .|+||++++|||++|+|||+++.||.. |++.+
T Consensus 321 ~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~ 398 (463)
T PLN02949 321 LQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDED 398 (463)
T ss_pred HHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCC
Confidence 78899999999999999999986 789999999999999998 999999999999999999999999864 77765
Q ss_pred -CceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 400 -GTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 400 -~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+.+|++++ | +++++++|.++++ +++.+++|++++++++ ++|||+++++++.+.|++++..
T Consensus 399 ~g~tG~l~~--~--~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 399 GQQTGFLAT--T--VEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred CCcccccCC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 67899884 5 9999999999998 5788999999999998 5599999999999999998764
|
|
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=305.19 Aligned_cols=339 Identities=21% Similarity=0.196 Sum_probs=258.8
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--hhhhhhhhcceeeE---ecCChhhHHhhcC
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--SLEHKMWDRGVQVI---SAKGQETINTALK 150 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 150 (470)
|||++++.++++ +++++.++++.|.++||+|++++............ ............+. .........+..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 699999988665 78999999999999999999999654432110000 00000000000000 0001122234579
Q ss_pred CcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch--hhhhcccccccceeeeehhhHHHHHHhhhhhhccC
Q 012132 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (470)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (470)
+|+||+|................ ..+++++.|+....... ......+...+.+++.+....+.+.+ .++.+
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~----~~~~~ 152 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIR----LLGCD 152 (355)
T ss_pred CCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC
Confidence 99999998654443333332211 25677888854322222 24455566778888888887776654 44677
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
..++.++|||+|.+.+.+.. .....+++.++++|++.+.||++.+++++.++.+ +.++
T Consensus 153 ~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~-------~~~~ 210 (355)
T cd03799 153 PDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD-------RGID 210 (355)
T ss_pred cccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh-------cCCC
Confidence 88899999999998875432 0122567889999999999999999999998855 3478
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcc------cccchHHHHHHh
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG------ECFGRITIEAMA 380 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~------E~~g~~~lEAma 380 (470)
++++++|.+ +..+.+++.++++++.++|++.|+. +++..+|+.||++++||. . |+||++++|||+
T Consensus 211 ~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~~Ea~a 283 (355)
T cd03799 211 FRLDIVGDG-----PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVLMEAMA 283 (355)
T ss_pred eEEEEEECC-----ccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHHHHHHH
Confidence 999999998 4678889999999999999999987 789999999999999999 7 999999999999
Q ss_pred cCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
+|+|||+++.|+.++++.++.+|++++++| +++++++|.+++++++.+.++++++++.+++.|||+.++++
T Consensus 284 ~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 284 MGLPVISTDVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred cCCCEEecCCCCcchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999988999999988 99999999999999999999999999999999999999875
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=307.32 Aligned_cols=334 Identities=13% Similarity=0.081 Sum_probs=224.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH-------H-------Hhhhhhh--hhcceee-E
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV-------I-------YSLEHKM--WDRGVQV-I 137 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~-------~~~~~~~--~~~~~~~-~ 137 (470)
||||++...+..||+|+.+.+|++.|.++||+|.++........... . ....... +..+... .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999999999999999999985543222100 0 0000000 0000000 1
Q ss_pred ecCChh-hHHhhcCCcEEEEcccchh---hhH-HHHhh-hcCCccccceeeEEeeecccc-----------chh------
Q 012132 138 SAKGQE-TINTALKADLIVLNTAVAG---KWL-DAVLK-EDVPRVLPNVLWWIHEMRGHY-----------FKL------ 194 (470)
Q Consensus 138 ~~~~~~-~~~~~~~~DiV~~~~~~~~---~~~-~~~~~-~~~~~~~~~~~~~~h~~~~~~-----------~~~------ 194 (470)
...... .+.+..+|||||+|..... ... ..... ........|++||.|+.+... ++.
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 111112 2325789999999986542 211 11000 011222368999999987331 000
Q ss_pred ---------------hh-------hcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHH
Q 012132 195 ---------------DY-------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (470)
Q Consensus 195 ---------------~~-------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 252 (470)
.+ .......+.+++.|....+.+. ..++ ..++.|||||+|.+.+.+.++.
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~----~~~~--~~~i~vI~NGid~~~~~~~~~~-- 232 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFN----SLYG--PGRCRIINNGIDMATEAILAEL-- 232 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHH----HHcC--CCCEEEeCCCcCcccccccccc--
Confidence 00 0001112345666666655433 2333 4689999999997543221110
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEeec--ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHH
Q 012132 253 KRVLREHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (470)
Q Consensus 253 ~~~~~~~~r~~~~~~~~~~~i~~vGrl--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (470)
...+ .++++.+++++|+. .+.||++.+++|+..+. ++++|+++|.|.+. .
T Consensus 233 -----~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~~-----~---- 284 (405)
T PRK10125 233 -----PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSPF-----T---- 284 (405)
T ss_pred -----cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCcc-----c----
Confidence 0001 12466789999994 46899999999998751 57999999987321 0
Q ss_pred HHHhcCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeec
Q 012132 331 YVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP 407 (470)
Q Consensus 331 ~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~ 407 (470)
.++|.++|+. .++.++|+++|+||+||. .|+||++++||||||+|||+|++||++|++.++ +|++++
T Consensus 285 -------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~ 354 (405)
T PRK10125 285 -------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVS 354 (405)
T ss_pred -------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEEC
Confidence 1468888864 568999999999999999 999999999999999999999999999999765 999999
Q ss_pred CCCCChHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 408 VGKEGITPLAKNIVKLATHVERRLT----MGKRGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 408 ~~d~~~~~la~~i~~ll~~~~~~~~----~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++| +++|++.+ +++.+++ +.+++++++.+.||++.++++|+++|+++
T Consensus 355 ~~d--~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 355 EEE--VLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred CCC--HHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999 99999854 3333332 23568888889999999999999999863
|
|
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=304.33 Aligned_cols=321 Identities=16% Similarity=0.139 Sum_probs=231.8
Q ss_pred cEEEEEeecc------CCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhh--ccee---eEecCChh
Q 012132 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQ---VISAKGQE 143 (470)
Q Consensus 75 ~kIl~v~~~~------~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~ 143 (470)
|||+++++.+ ..||+++++.+|+++|.+.||+|++++.................... .... ........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 7999999986 33777999999999999999999999965543211100000000000 0000 00011223
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhh
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (470)
.+.+..+||+||+|+.....+ ..+ ....|++++.|+........ ........+..++.|......+..
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~---~~~----~~~~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~---- 148 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP---FAR----PLPVPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWPP---- 148 (335)
T ss_pred HHHhcCCCCEEEecCcccchh---hhc----ccCCCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhccc----
Confidence 455668999999998765554 111 12257889999875443322 222334445566666665443321
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
..++.+||||+|.+.|.+.. .++..++++||+.+.||++.+++++++
T Consensus 149 -----~~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~--------- 195 (335)
T cd03802 149 -----LPWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIRAARR--------- 195 (335)
T ss_pred -----ccccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHHHHHh---------
Confidence 16799999999998875421 345678999999999999999998753
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC-CCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHh
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (470)
.+++|+|+|+|. ....+.....+.. +.++|+|+|++ +++.++|+.+|++++||. +.|+||++++|||+
T Consensus 196 ---~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma 266 (335)
T cd03802 196 ---AGIPLKLAGPVS-----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMA 266 (335)
T ss_pred ---cCCeEEEEeCCC-----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHh
Confidence 578999999984 3344444444433 56899999986 567899999999999997 36999999999999
Q ss_pred cCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
||+|||+++.||..|++.++.+|+++++ +++++++|.++.+.. .+++++++.++|||+.++++|+++|+
T Consensus 267 ~G~PvI~~~~~~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 267 CGTPVIAFRRGAVPEVVEDGVTGFLVDS----VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred cCCCEEEeCCCCchhheeCCCcEEEeCC----HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999999989999975 799999999986543 24677888899999999999999984
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=301.49 Aligned_cols=337 Identities=12% Similarity=0.091 Sum_probs=234.1
Q ss_pred cccEEEEEeeccCC--CchhHHHHHHHHHHHhCC-ceEEEEecCCCCCchhH-------------HH-hhhhhh-----h
Q 012132 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEV-------------IY-SLEHKM-----W 130 (470)
Q Consensus 73 ~~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~-------------~~-~~~~~~-----~ 130 (470)
++|||++++..+.| +|.......++.+|+++| |+|+|+.++.+...... .. ...+.. .
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 56999999998876 888899999999999999 89999997654211000 00 000000 0
Q ss_pred hcc--eeeEec------------CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh--
Q 012132 131 DRG--VQVISA------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-- 194 (470)
Q Consensus 131 ~~~--~~~~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-- 194 (470)
-.+ +..++. ......+...+||+||++++....+.........+ . ..++.++|....+|...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k-~-~~vV~tyHT~y~~Y~~~~~ 160 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTK-F-RLVIGIVHTNYLEYVKREK 160 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhc-C-CcEEEEECCChHHHHHHhc
Confidence 011 111111 12334556789999999999877775222222111 1 23777888754443211
Q ss_pred ------hhh----ccc--ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHH
Q 012132 195 ------DYV----KHL--PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (470)
Q Consensus 195 ------~~~----~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (470)
... .++ ...+.+++.|....+ +. ..+.+..+|||.+.|.+.... .++
T Consensus 161 ~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-----------~~~i~~v~GVd~~~f~~~~~~---------~~~ 219 (462)
T PLN02846 161 NGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YP-----------RSIICNVHGVNPKFLEIGKLK---------LEQ 219 (462)
T ss_pred cchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-----------hCEEecCceechhhcCCCccc---------Hhh
Confidence 011 111 123555666653322 11 123444589999988765321 222
Q ss_pred HcCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCc
Q 012132 263 SLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (470)
Q Consensus 263 ~~~~~~~--~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (470)
.++ +.+ ..+++|+||+.++||++.+++|++++.+ ..++++|+|+|+| |.+++|+++++++++..+
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~-------~~~~~~l~ivGdG-----p~~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQK-------ELSGLEVDLYGSG-----EDSDEVKAAAEKLELDVR 286 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHh-------hCCCeEEEEECCC-----ccHHHHHHHHHhcCCcEE
Confidence 222 334 3468899999999999999999998755 3478999999999 689999999999998754
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
+ |.|. .+..++|+.+|+||+||. .|+||++++||||||+|||+++.++ .+++.++.+|++++ | .+++++++
T Consensus 287 v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~--~~~~a~ai 357 (462)
T PLN02846 287 V-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--D--GKGFVRAT 357 (462)
T ss_pred E-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--C--HHHHHHHH
Confidence 4 7776 455689999999999999 9999999999999999999999998 59999999999984 4 89999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
.++++++. ..++.+++ +.|||+..+++++++|+-
T Consensus 358 ~~~l~~~~--~~~~~~a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 358 LKALAEEP--APLTDAQR----HELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHccCc--hhHHHHHH----HhCCHHHHHHHHHHHhcc
Confidence 99998542 22233333 469999999999999974
|
|
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=301.72 Aligned_cols=348 Identities=20% Similarity=0.193 Sum_probs=249.8
Q ss_pred EEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE------ecCChhhHHhh
Q 012132 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI------SAKGQETINTA 148 (470)
Q Consensus 76 kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 148 (470)
||+|+++..+ .||.++++.+|+++|.+.||+|.+++............ . ....... .........+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG----E--QEVVRVIVLDNPLDYRRAARAIRL 74 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC----c--ccceeeeecCCchhHHHHHHHHhh
Confidence 6999998877 47779999999999999999999998544322111000 0 0011111 11122344567
Q ss_pred cCCcEEEEcccch--hhhHHHHhhhcCCccccceeeEEeeecccc----chhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 149 LKADLIVLNTAVA--GKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 149 ~~~DiV~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
.+||+||++.... .................+++++.|+..... ........+...+.+++.| .+...+...
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHh
Confidence 8999999976221 111111111111112368899999862111 1122334456778888886 222222211
Q ss_pred hhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 012132 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (470)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~ 302 (470)
.. ...++.++|||++...+..... .++...+.+.++++++|++.+.||++.+++|++.+.+
T Consensus 152 -~~--~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~----- 212 (366)
T cd03822 152 -RA--YPEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA----- 212 (366)
T ss_pred -hc--CCCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh-----
Confidence 11 1468999999999877654321 1233445678899999999999999999999998865
Q ss_pred cccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc-c--CCHHHHHHhcCEEEEccCCccc--ccchHHHH
Q 012132 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGE--CFGRITIE 377 (470)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~--~~~~~~~~~aDv~v~pS~~~~E--~~g~~~lE 377 (470)
+.++++|+|+|++.+..........++++++++.++|.|+|. . +++.++|+.||++++||. .| ++|++++|
T Consensus 213 --~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~E 288 (366)
T cd03822 213 --KHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLAY 288 (366)
T ss_pred --hCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHHH
Confidence 448999999999753221111111134788899999999986 3 789999999999999999 89 99999999
Q ss_pred HHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 378 AMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 378 Ama~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
||++|+|||+++.|+ .+.+.++.+|++++++| +++++++|.++++|++.+.++++++++++.+ |||+++++++.++
T Consensus 289 a~a~G~PvI~~~~~~-~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~ 364 (366)
T cd03822 289 AIGFGKPVISTPVGH-AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRL 364 (366)
T ss_pred HHHcCCCEEecCCCC-hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 999999999999999 77777788999999998 9999999999999999999999999999988 9999999999998
Q ss_pred HH
Q 012132 458 LK 459 (470)
Q Consensus 458 ~~ 459 (470)
|+
T Consensus 365 ~~ 366 (366)
T cd03822 365 LA 366 (366)
T ss_pred hC
Confidence 74
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=300.57 Aligned_cols=332 Identities=26% Similarity=0.249 Sum_probs=250.3
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------C-hh
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------G-QE 143 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~ 143 (470)
|||+++..+++ ||.++++.+++++|.++||+|++++.......... ...+..+.... . ..
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE--------ERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh--------hccCceEEEeecccccccccccHH
Confidence 69999998876 66699999999999999999999996544322111 01111111110 0 00
Q ss_pred ----hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeeeehhh
Q 012132 144 ----TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVT 213 (470)
Q Consensus 144 ----~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~ 213 (470)
......+||+||+|.+............ ...+.++++|+..... +.......+...+.+++.|...
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~ 148 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNY 148 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHH
Confidence 1134678999999986654333322222 1246777888532111 1122233456677788777777
Q ss_pred HHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 012132 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+.+.. .... ..++.+||||+|.+.+.+.... +. .....+.+.++++++||+.+.||++.+++|+.
T Consensus 149 ~~~~~~----~~~~-~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~ 214 (357)
T cd03795 149 AETSPV----LRRF-RDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAA 214 (357)
T ss_pred HHHHHH----hcCC-ccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEecccccccCHHHHHHHHH
Confidence 654443 2222 3679999999999877654221 00 22334467789999999999999999999998
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~ 371 (470)
++ .+++++|+|+| +....+++.++++++.++|+|+|++ +++.++|+.||++++||....|+|
T Consensus 215 ~l-----------~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~ 278 (357)
T cd03795 215 AL-----------PDAPLVIVGEG-----PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAF 278 (357)
T ss_pred hc-----------cCcEEEEEeCC-----hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccccc
Confidence 76 37999999998 5788899999899999999999987 568999999999999996336999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeec-CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 450 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 450 (470)
|++++|||++|+|||+++.++..+.+.+ +++|++++++| +++++++|.++++|++.++.|++++++.++++|||+++
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 9999999999999999999999998876 89999999998 99999999999999999999999999999999999987
Q ss_pred H
Q 012132 451 A 451 (470)
Q Consensus 451 ~ 451 (470)
+
T Consensus 357 ~ 357 (357)
T cd03795 357 V 357 (357)
T ss_pred C
Confidence 4
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=282.44 Aligned_cols=343 Identities=20% Similarity=0.177 Sum_probs=262.8
Q ss_pred cEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--------------
Q 012132 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------- 138 (470)
Q Consensus 75 ~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 138 (470)
++|+++++.+.| ||.+.+...|++.|-+.||.|.+++-..+... .-.....|.+++.
T Consensus 1 ~~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r~-------girylt~glkVyylp~~v~~n~tT~pt 73 (426)
T KOG1111|consen 1 SRILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-------GIRYLTNGLKVYYLPAVVGYNQTTFPT 73 (426)
T ss_pred CcceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCcc-------ceeeecCCceEEEEeeeeeecccchhh
Confidence 368999988655 77799999999999999999999995444321 1111122233322
Q ss_pred ----cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceee
Q 012132 139 ----AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMI 208 (470)
Q Consensus 139 ----~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~ 208 (470)
.+..+.+..+++..+||.|++.....-..+...+. ..-+.+++-|...+..-- ......+...++.+|
T Consensus 74 v~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hart--MGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~Ic 151 (426)
T KOG1111|consen 74 VFSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHART--MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIIC 151 (426)
T ss_pred hhccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHh--cCceEEEeccccccccchhhhhhcceeeeeecCCCcEEE
Confidence 23445666678999999999876554443333222 335788899986554321 112233557788999
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
+|.+..+- ..-+-.+.+.++.+|||.++.+.|.|.+... ...+-..++.+||+..+||+|++
T Consensus 152 Vshtsken----tvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~--------------~S~~i~~ivv~sRLvyrKGiDll 213 (426)
T KOG1111|consen 152 VSHTSKEN----TVLRGALAPAKVSVIPNAVVTHTFTPDAADK--------------PSADIITIVVASRLVYRKGIDLL 213 (426)
T ss_pred EeecCCCc----eEEEeccCHhHeeeccceeeccccccCcccc--------------CCCCeeEEEEEeeeeeccchHHH
Confidence 99988643 2235567889999999999999999854321 11233788999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~ 366 (470)
++++.++.+ ++|+++++|+|+| |.+..+++..+++.++++|.++|.+ +++.+.|..-|+|++||.
T Consensus 214 ~~iIp~vc~-------~~p~vrfii~GDG-----Pk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl- 280 (426)
T KOG1111|consen 214 LEIIPSVCD-------KHPEVRFIIIGDG-----PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL- 280 (426)
T ss_pred HHHHHHHHh-------cCCCeeEEEecCC-----cccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH-
Confidence 999999987 7899999999999 7889999999999999999999975 899999999999999999
Q ss_pred cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
.|.||++++|||+||+|||+|++||++|++.++ .-++.++ . ++++++++++.+..-. ..-+...+++++.|+
T Consensus 281 -TEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~-~--~~dl~~~v~~ai~~~~---~~p~~~h~~v~~~y~ 352 (426)
T KOG1111|consen 281 -TEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEP-G--PDDLVGAVEKAITKLR---TLPLEFHDRVKKMYS 352 (426)
T ss_pred -HHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCC-C--hHHHHHHHHHHHHHhc---cCchhHHHHHHHhcc
Confidence 999999999999999999999999999999765 2233333 3 7888888888886422 113455677888999
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 012132 447 EHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~ 465 (470)
|+..+++-+++|.++...+
T Consensus 353 w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 353 WKDVAERTEKVYDRAATTS 371 (426)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999987654
|
|
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=311.70 Aligned_cols=219 Identities=18% Similarity=0.248 Sum_probs=177.5
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHH-----------HHHHHHHHHcCC--CCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKR-----------VLREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~-----------~~~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+++.||++|+|...|.|......+. ......++.+|+ +.++++|+++||+.+.||++.+++|++++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 56899999999999887543211100 011223456776 45567899999999999999999999987
Q ss_pred HHHHHhhcccCCceEEEEEeCCC-Cc---ChH---HHHHHHHHHHhcCCCCcEEEeccc------CCHHHHHH-hcCEEE
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDM-NA---QTK---FESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLV 361 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~-~~---~~~---~~~~l~~~~~~~~l~~~V~~~g~~------~~~~~~~~-~aDv~v 361 (470)
.+ ..++++|+|+|+|. +. ..+ ....+.++++++++.++|.|+|.+ .++..+++ ++|+||
T Consensus 599 ~~-------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfV 671 (815)
T PLN00142 599 KR-------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFV 671 (815)
T ss_pred HH-------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEE
Confidence 44 22679999999872 11 111 235678899999999999999863 24555555 579999
Q ss_pred EccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHH----HhCHHHHHHHHHHH
Q 012132 362 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL----ATHVERRLTMGKRG 437 (470)
Q Consensus 362 ~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l----l~~~~~~~~~~~~a 437 (470)
+||. +|+||++++||||||+|||+|+.||+.|+|.++.+|++++++| +++++++|.++ +.|++.+++|+++|
T Consensus 672 lPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr~~mg~~A 747 (815)
T PLN00142 672 QPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYWNKISDAG 747 (815)
T ss_pred eCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999 99999998765 46999999999999
Q ss_pred HHHHHHHcChhHHHHHHHHHH
Q 012132 438 YERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++++.++|||+.++++++++.
T Consensus 748 r~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 748 LQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998865
|
|
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=298.97 Aligned_cols=348 Identities=19% Similarity=0.165 Sum_probs=249.1
Q ss_pred EEEEEeeccC--CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh-----hh-----hhhcceeeEecCChh
Q 012132 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----HK-----MWDRGVQVISAKGQE 143 (470)
Q Consensus 76 kIl~v~~~~~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~ 143 (470)
||+++++.++ .||+++++.+++++|.+.||+|++++............... .. ...............
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 6999999885 47779999999999999999999999655432221110000 00 000000000000011
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--hhhh----------hcccccccceeeeeh
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLDY----------VKHLPLVAGAMIDSH 211 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~~~~----------~~~~~~~~~~~~~s~ 211 (470)
......++|+||+|+............. .....+++++.|+....+. .... ...+...+.+++.+.
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAA--RKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHH--HHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 2233468999999985432222111111 1122577888887644332 1000 111223344444443
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
....... ......++.++|||+|.+.+.+.... . .|+.++.+.++++++++||+.+.||++.+++|
T Consensus 159 ~~~~~~~------~~~~~~~~~vi~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 159 QEAAEIR------RLGLKAPIAVIPNGVDIPPFAALPSR-------G-RRRKFPILPDKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred HHHHHHH------hhCCcccEEEcCCCcChhccCcchhh-------h-hhhhccCCCCCcEEEEEeCcchhcCHHHHHHH
Confidence 3222221 23456789999999999887654321 1 16777777888999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (470)
+.++.+ +.++++++++|.+.. .+...++.+++++++.++|+|+|++ +++..+|+.||++++||. .|
T Consensus 225 ~~~l~~-------~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e 292 (375)
T cd03821 225 FAKLAE-------RFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH--SE 292 (375)
T ss_pred HHHhhh-------hcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc--cC
Confidence 998865 448999999998743 3556677777889999999999987 489999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
+||++++|||+||+|||+++.+|..+++.+ ..|++++.+ .++++++|.+++++++.++.+++++++.+.++|+|++
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVEERFSWTA 368 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999988 788888754 6999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 012132 450 MAERIA 455 (470)
Q Consensus 450 ~~~~~~ 455 (470)
++++++
T Consensus 369 ~~~~~~ 374 (375)
T cd03821 369 IAQQLL 374 (375)
T ss_pred HHHHhh
Confidence 999875
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=310.42 Aligned_cols=276 Identities=22% Similarity=0.238 Sum_probs=225.2
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc--------------chhhh--------hcccccccce
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------------FKLDY--------VKHLPLVAGA 206 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------------~~~~~--------~~~~~~~~~~ 206 (470)
.++|+||+|+.....++....+.. ...|++++.|+..... ++..+ ...+...+.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 589999999754333333333322 2258899999853210 11111 1223456777
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
++.|....+... .++.+.+|+.+||||+|.+.|.+.... ..+.+.++|+++||+.+.||++
T Consensus 249 i~~s~~~~~~~~-----~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg~~ 309 (475)
T cd03813 249 TTLYEGNRERQI-----EDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKDIK 309 (475)
T ss_pred EecCHHHHHHHH-----HcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccCHH
Confidence 777776654332 567888899999999999988654210 1235678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (470)
.+++|++.+.+ +.|+++++|+|++++ ++.+.++++++++++++.++|+|+| .+++.++|+.+|++++||.
T Consensus 310 ~li~a~~~l~~-------~~p~~~l~IvG~g~~-~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~- 379 (475)
T cd03813 310 TFIRAAAIVRK-------KIPDAEGWVIGPTDE-DPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSI- 379 (475)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEECCCCc-ChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCch-
Confidence 99999998865 458999999999853 3358899999999999999999999 7899999999999999999
Q ss_pred cccccchHHHHHHhcCCCEEecCCCCcceeeec------CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
.|+||++++|||+||+|||+|+.|+.+|++.+ |.+|++++++| +++++++|.++++|++.+++++++++++
T Consensus 380 -~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~~~~a~~~ 456 (475)
T cd03813 380 -SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAMGEAGRKR 456 (475)
T ss_pred -hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 56999999999 9999999999999999999999999999
Q ss_pred HHHHcChhHHHHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~ 459 (470)
+.+.|+|+.++++|.++|+
T Consensus 457 v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 457 VERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999984
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=293.40 Aligned_cols=329 Identities=21% Similarity=0.249 Sum_probs=250.3
Q ss_pred EEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCC-CchhHHHhhhhhhhhcce----------eeEecCChh
Q 012132 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGV----------QVISAKGQE 143 (470)
Q Consensus 76 kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 143 (470)
||+++++.+. .||+++++..++++|.+.||+|++++..... .... .......... .........
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGDKRDSKLLARFKKLRRLR 76 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeecccccccchhccccchHHHH
Confidence 6899999887 6777999999999999999999999965543 1110 0110000000 011112233
Q ss_pred hHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhh-----hhcccccccceeeeehhhHHHHH
Q 012132 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVAGAMIDSHVTAEYWK 218 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~ 218 (470)
.+.+..+||+||++......++.. ..... .+++.+.|+......... ....+...+.+++.|......
T Consensus 77 ~~l~~~~~d~i~~~~~~~~~~~~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 149 (348)
T cd03820 77 KLLKNNKPDVVISFLTSLLTFLAS-LGLKI----VKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRAL-- 149 (348)
T ss_pred HhhcccCCCEEEEcCchHHHHHHH-Hhhcc----ccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHH--
Confidence 455668999999998762222222 11111 367788887644332211 233456778888888777511
Q ss_pred HhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 012132 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (470)
.......++.++|||++...+... .+.++..++++|++.+.||++.+++++.++.+
T Consensus 150 -----~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~- 205 (348)
T cd03820 150 -----YYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK- 205 (348)
T ss_pred -----hhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh-
Confidence 233466789999999998865432 12567889999999999999999999998865
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
..++++|+|+|++ +....++++++++++.++|.+.|..+++..+|+.||++++||. .|++|++++||
T Consensus 206 ------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~~~Ea 272 (348)
T cd03820 206 ------KHPDWKLRIVGDG-----PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMVLLEA 272 (348)
T ss_pred ------cCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHHHHHH
Confidence 4589999999998 4677788889999999999999999999999999999999999 89999999999
Q ss_pred HhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 379 MAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 379 ma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
|++|+|||+++.+ +..+++.++.+|+++++.| +++++++|.++++|++.++++++++++.+ +.|+|++++++|.
T Consensus 273 ~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (348)
T cd03820 273 MAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARESA-ERFSIENIIKQWE 347 (348)
T ss_pred HHcCCCEEEecCCCchHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhCHHHHHHHhc
Confidence 9999999999975 5667777777999999988 99999999999999999999999997655 6699999999875
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=296.85 Aligned_cols=342 Identities=20% Similarity=0.206 Sum_probs=250.0
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--hh--hhhhhhccee--eEecCChhhHHh
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--SL--EHKMWDRGVQ--VISAKGQETINT 147 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--~~--~~~~~~~~~~--~~~~~~~~~~~~ 147 (470)
||++++..+++ ||++.++.+++++|.++||+|++++............ .+ .......... +..........+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 68999988765 6668999999999999999999999654321110000 00 0000000011 111122334446
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------------hhhhcccccccceeeeehhhHH
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~~~ 215 (470)
..+||+||+++.....+........ ...|++.++|+....+.. ..........+.+++.+....+
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 157 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARR---LGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD 157 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHH---cCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH
Confidence 7899999998755433333222221 225778888875432211 1112233456667777776655
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+. . ....++.+++||+|.+.+.+.... ...+++++ +.++++++++|++.+.||++.+++++.++
T Consensus 158 ~~~-----~--~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l 222 (364)
T cd03814 158 ELR-----A--RGFRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPL 222 (364)
T ss_pred HHh-----c--cCCCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHh
Confidence 322 1 234578999999999887654321 22344555 45678899999999999999999999988
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEEccCCcccccch
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGR 373 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~ 373 (470)
.+ + ++++++|+|+| +....++ +..++|.|+|+ .+++.++|+.||++++||. .|+||+
T Consensus 223 ~~-------~-~~~~l~i~G~~-----~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~ 281 (364)
T cd03814 223 RR-------R-PPVRLVIVGDG-----PARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETFGL 281 (364)
T ss_pred hh-------c-CCceEEEEeCC-----chHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCc
Confidence 54 3 68999999998 3444444 44578999996 4789999999999999999 899999
Q ss_pred HHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
+++|||+||+|||+++.++..|++.++.+|+++++.| .++++++|.++++|++.+.++++++++.+ +.|+|++++++
T Consensus 282 ~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 358 (364)
T cd03814 282 VVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFLDN 358 (364)
T ss_pred HHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHHHH
Confidence 9999999999999999999999999989999999988 99999999999999999999999999988 66999999999
Q ss_pred HHHHHH
Q 012132 454 IAVVLK 459 (470)
Q Consensus 454 ~~~~~~ 459 (470)
+.++|+
T Consensus 359 ~~~~~~ 364 (364)
T cd03814 359 LLEAYR 364 (364)
T ss_pred HHHhhC
Confidence 999874
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=293.12 Aligned_cols=347 Identities=21% Similarity=0.279 Sum_probs=258.4
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhh-------hhhcceeeEecCChhhHH
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-------MWDRGVQVISAKGQETIN 146 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 146 (470)
|||+++..++| ||++..+.+++++|.++||+|++++................. ..................
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 68999988765 666899999999999999999999965443221100000000 000000000011122335
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---------------hhhhcccccccceeeeeh
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------------LDYVKHLPLVAGAMIDSH 211 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---------------~~~~~~~~~~~~~~~~s~ 211 (470)
+..+||+||++++............. ...+++++.|+....+.. ......+..++.+++.+.
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARK---LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHH---cCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 66899999999875443333322222 225788888875432210 112233456677777777
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+.+. .++.. .++.++|||+|...+.+... ...++.++.++++++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~-----~~~~~-~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 223 (374)
T cd03817 158 KIADLLR-----EYGVK-RPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRA 223 (374)
T ss_pred HHHHHHH-----hcCCC-CceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHH
Confidence 7655554 33433 45999999999988765432 2236667777888999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (470)
+..+.+ +.++++++++|+| +..+.+++.++++++.++|.++|+. +++..+|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e 289 (374)
T cd03817 224 FARLLK-------EEPDVKLVIVGDG-----PEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST--TE 289 (374)
T ss_pred HHHHHH-------hCCCeEEEEEeCC-----chHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--cc
Confidence 998765 3478999999998 5788899999999999999999986 789999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
++|++++|||+||+|||+++.|+..|++.++.+|+++++.+ . +++++|.+++++++.++++++++++.+.+.+
T Consensus 290 ~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---- 362 (374)
T cd03817 290 TQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---- 362 (374)
T ss_pred CcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999887 5 9999999999999999999999999997744
Q ss_pred HHHHHHHHHHH
Q 012132 450 MAERIAVVLKE 460 (470)
Q Consensus 450 ~~~~~~~~~~~ 460 (470)
++++++++|++
T Consensus 363 ~~~~~~~~~~~ 373 (374)
T cd03817 363 FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHhc
Confidence 66777777765
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=293.67 Aligned_cols=343 Identities=20% Similarity=0.159 Sum_probs=241.7
Q ss_pred EEEEEeeccCCC-chhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhh---hhcceeeEec--C--C----
Q 012132 76 LVLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKM---WDRGVQVISA--K--G---- 141 (470)
Q Consensus 76 kIl~v~~~~~~~-G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~--~---- 141 (470)
.|.|++++...| ||||++.+.+.+|.+. ||+|+|+|.................+ ...++.++.. . .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 589999999987 6699999999999998 89999999776543321111111111 1122332221 0 0
Q ss_pred -h----------------hhHHhhcCCcEEEEcccchhhh-HHHHhhhcCCccccceeeEEeeecc--ccc---------
Q 012132 142 -Q----------------ETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRG--HYF--------- 192 (470)
Q Consensus 142 -~----------------~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~--~~~--------- 192 (470)
. .......+||+++.+++....+ +...+. ..|++.++|-... ..+
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~------~~~~i~y~h~P~~~~d~l~~~~~~~~~ 155 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLG------GCPVGAYVHYPTISTDMLQKVRSREAS 155 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhc------CCeEEEEecCCcchHHHHHHHhhcccc
Confidence 0 0111235799999887554332 222222 1478888992100 111
Q ss_pred ----------------hh--------hhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhh
Q 012132 193 ----------------KL--------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAE 248 (470)
Q Consensus 193 ----------------~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~ 248 (470)
+. .+.......+.++++|..+.+.+.+ .++. ..++.||+||+|.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~----~~~~-~~~~~vi~~gvd~~~~~~~~ 230 (419)
T cd03806 156 YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRS----LWKR-NTKPSIVYPPCDVEELLKLP 230 (419)
T ss_pred ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHH----HhCc-CCCcEEEcCCCCHHHhcccc
Confidence 00 1122245677888888888777654 3332 24799999999988775432
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-ChHHHHH
Q 012132 249 DNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESE 327 (470)
Q Consensus 249 ~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~-~~~~~~~ 327 (470)
. ....+..+|+++||+.+.||++.+++|++++.+..++. ..++++|+|+|++... +.++.++
T Consensus 231 ~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~ 293 (419)
T cd03806 231 L---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVED 293 (419)
T ss_pred c---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHH
Confidence 1 01245678999999999999999999999887632110 0136999999987432 2247788
Q ss_pred HHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc-ceeee---cCc
Q 012132 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT-TEIVV---NGT 401 (470)
Q Consensus 328 l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~-~e~v~---~~~ 401 (470)
|+++++++++.++|+|+|.. +++..+|+.||++++||. .|+||++++||||||+|||+++.||. .|++. ++.
T Consensus 294 L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~ 371 (419)
T cd03806 294 LKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGP 371 (419)
T ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCC
Confidence 99999999999999999985 789999999999999999 89999999999999999999998775 57887 789
Q ss_pred eeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 402 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 402 ~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
+|++++ | +++++++|.+++++++...++..++++.+.++||++.+.+
T Consensus 372 ~G~l~~--d--~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 372 TGFLAS--T--AEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred ceEEeC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 999974 5 9999999999999655444334555666778899998753
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=292.26 Aligned_cols=330 Identities=16% Similarity=0.191 Sum_probs=235.6
Q ss_pred EEEEEeec-cCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh----------
Q 012132 76 LVLLVSHE-LSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (470)
Q Consensus 76 kIl~v~~~-~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 142 (470)
||++++.. +++ ||.++++.+++++|.++||+|+|++........ .....|+.++..+..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK--------ETEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc--------ccccCCceEEEcCCCCccchhhhHH
Confidence 68898765 333 677999999999999999999999965433211 111234444332211
Q ss_pred --hhHH----hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--h---hh-----hhcccccccce
Q 012132 143 --ETIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--K---LD-----YVKHLPLVAGA 206 (470)
Q Consensus 143 --~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~---~~-----~~~~~~~~~~~ 206 (470)
..+. ...++|+||...+....+. ..... ...+++++.|+...... . .. ....+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFL-PLLRL----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHH-HHHHh----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 1111 1334455554444332221 11221 13578888887531110 0 11 11224456778
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
++.|....+.+.+ .++.+. .+||||+|...+.+. ...+++++++++. .++++||+.+.||++
T Consensus 148 i~~s~~~~~~~~~----~~~~~~---~~i~ngv~~~~~~~~----------~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~ 209 (363)
T cd04955 148 IADSPGIKEYLKE----KYGRDS---TYIPYGADHVVSSEE----------DEILKKYGLEPGR-YYLLVGRIVPENNID 209 (363)
T ss_pred EeCCHHHHHHHHH----hcCCCC---eeeCCCcChhhcchh----------hhhHHhcCCCCCc-EEEEEecccccCCHH
Confidence 8888777766643 555432 899999998876431 1234455665444 577999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH-hcCCCCcEEEeccc--CCHHHHHHhcCEEEEc
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~p 363 (470)
.+++|++++. ++++|+++|+|.. ...+.+.++ .+++.++|+|+|++ +++.++|+.+|++++|
T Consensus 210 ~li~a~~~l~----------~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 210 DLIEAFSKSN----------SGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred HHHHHHHhhc----------cCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 9999998762 3799999999842 233333333 56778899999986 6788999999999999
Q ss_pred cCCcc-cccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 364 SQAWG-ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 364 S~~~~-E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
|. . |+||++++|||+||+|||+|+.|+..|++.+ +|.+++++| . ++++|.+++++++.+.++++++++.+.
T Consensus 275 s~--~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~~~~~~~~~ 346 (363)
T cd04955 275 GH--SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMAKAARERIR 346 (363)
T ss_pred Cc--cCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99 6 9999999999999999999999999999955 789998765 4 999999999999999999999999999
Q ss_pred HHcChhHHHHHHHHHHH
Q 012132 443 EIFQEHHMAERIAVVLK 459 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~ 459 (470)
++|||+.++++++++|+
T Consensus 347 ~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 347 EKYTWEKIADQYEELYK 363 (363)
T ss_pred HhCCHHHHHHHHHHHhC
Confidence 99999999999999984
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.19 Aligned_cols=351 Identities=25% Similarity=0.264 Sum_probs=269.0
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee--------EecCChhhH
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--------ISAKGQETI 145 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 145 (470)
||+++++.+++ ||+..++.++++.|.+.||+|.+++......................... .........
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 68999998765 56689999999999999999999996554322111000000000000000 001112344
Q ss_pred HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-----------hhhhcccccccceeeeehhhH
Q 012132 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------LDYVKHLPLVAGAMIDSHVTA 214 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~~ 214 (470)
....+||+||++.............. ...+++++.|+....... ......+...+.+++.+....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARL----LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHh----cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 45679999999987655443311111 225788999987544321 122334556778888888777
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+.+.+ .++.+..++.++|||++...+.+.. ...+.......+.++++++|++.+.||++.+++++..
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (374)
T cd03801 157 EELRE----LGGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAK 223 (374)
T ss_pred HHHHh----cCCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHH
Confidence 66654 4454557899999999998775432 1223344455677899999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+ +.++++|+++|++ +....+++.+++++..++|.+.|+. +++.++|+.||++++|+. .|++|
T Consensus 224 ~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~ 289 (374)
T cd03801 224 LRK-------EYPDVRLVIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGFG 289 (374)
T ss_pred Hhh-------hcCCeEEEEEeCc-----HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hcccc
Confidence 865 3478999999987 6888889998889999999999987 899999999999999999 89999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
++++|||++|+|||+++.++..|++.++.+|+++++.| +++++++|.++++|++.+.++++++++.+.+.|+|+++++
T Consensus 290 ~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 290 LVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred chHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999899999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012132 453 RIAVVLK 459 (470)
Q Consensus 453 ~~~~~~~ 459 (470)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9998874
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=294.21 Aligned_cols=347 Identities=13% Similarity=0.070 Sum_probs=241.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChh---------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (470)
+.++|++++... .|++.++..++++|+++||+|+|++...+... .+.....|+.++......
T Consensus 2 ~~~~~~~~~~~~--~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGD--IGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-------DEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEecc--cCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-------HHHhcCCCEEEEECCCCccccccchHH
Confidence 356788888633 56677789999999999999999996543321 111223455554432110
Q ss_pred ----------------hHHhhcCCcEEEEcccchh--hhHHHHhhhcCCccccceeeEEeeecccc----------c---
Q 012132 144 ----------------TINTALKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------F--- 192 (470)
Q Consensus 144 ----------------~~~~~~~~DiV~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----------~--- 192 (470)
.+....+||+||+|++... .+...+..... ..|++.++|+..... .
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~---~~~~V~~~h~~~~~~~~~~~~~~~~~~~~ 149 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLR---RTKLIIDWHNYGYTILALKLGENHPLVRL 149 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh---CCeEEEEcCCchHHHHhcccCCCCHHHHH
Confidence 1234468999999875432 11222222211 257888888753210 0
Q ss_pred -hhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHH---------
Q 012132 193 -KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE--------- 262 (470)
Q Consensus 193 -~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~--------- 262 (470)
.......++..+.+++.|..+.+.+.+ ++.+.+++.|||||. ...|.+.+.... +...++
T Consensus 150 ~~~~e~~~~~~ad~ii~vS~~~~~~l~~-----~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~~~ 219 (415)
T cd03816 150 AKWYEKLFGRLADYNLCVTKAMKEDLQQ-----FNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLTRE 219 (415)
T ss_pred HHHHHHHHhhcCCEeeecCHHHHHHHHh-----hhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhccccccccc
Confidence 000112345678888888888766542 567889999999994 455655432111 111111
Q ss_pred ----HcCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 263 ----SLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 263 ----~~~~-~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
..++ +++..+++++||+.+.||++.+++|++.+.+...+ +.++|+++|+|+|+| +..++++++++++++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~-~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l 293 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAAT-GPKLPKLLCIITGKG-----PLKEKYLERIKELKL 293 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcc-cccCCCEEEEEEecC-----ccHHHHHHHHHHcCC
Confidence 1122 23456788899999999999999999988643211 012478999999999 578999999999999
Q ss_pred CCcEEEeccc--CCHHHHHHhcCEEEEccCC-cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChH
Q 012132 338 QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414 (470)
Q Consensus 338 ~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~-~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (470)
.+.+.+.|+. +++..+|++||+++.|+.. ..|++|++++||||||+|||+++.||..|++.++.+|++++ | ++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d--~~ 369 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--D--SE 369 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--C--HH
Confidence 7555555764 8999999999999975321 15789999999999999999999999999999999999994 6 99
Q ss_pred HHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 415 PLAKNIVKLATH---VERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 415 ~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
+++++|.++++| ++.+++|+++++++.+ ++|++..++
T Consensus 370 ~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 370 ELAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 999999999999 8999999999999873 566554443
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=288.16 Aligned_cols=331 Identities=22% Similarity=0.267 Sum_probs=249.5
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------------
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------- 140 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 140 (470)
||+++++. .||.+.+...++++|.+.||+|++++....... .....++.++...
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 68999987 567789999999999999999999996654321 1112233322211
Q ss_pred -ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---------hhhhcccccccceeeee
Q 012132 141 -GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 141 -~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---------~~~~~~~~~~~~~~~~s 210 (470)
......+..+||+||++......+....... . ..+++++..|+....... ......+...+.+++.|
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 146 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAARL-A--GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQN 146 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHHH-c--CCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcC
Confidence 1223445689999999975544332222221 1 124566777765322211 11223345567788888
Q ss_pred hhhHHHHHHhhhhhhccC-CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
....+.+.+. ...+ ..++.+++||+|.+.+.+.... .+.++++++++|++.+.||++.++
T Consensus 147 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~li 207 (359)
T cd03808 147 EDDRDLALKL----GIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDELL 207 (359)
T ss_pred HHHHHHHHHh----cCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHHH
Confidence 8777666542 2222 4668888999998877544210 125678999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHH-HHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~-~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+++..+.+ +.++++|+|+|.+... ..... .+.+++..++|.++|+.+++.++|+.||++++||. .
T Consensus 208 ~~~~~l~~-------~~~~~~l~i~G~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~--~ 273 (359)
T cd03808 208 EAARILKA-------KGPNVRLLLVGDGDEE-----NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY--R 273 (359)
T ss_pred HHHHHHHh-------cCCCeEEEEEcCCCcc-----hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--c
Confidence 99998754 3589999999998532 22222 36667778899999999999999999999999999 8
Q ss_pred cccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChh
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 448 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 448 (470)
|++|++++|||++|+|||+++.++..|++.++.+|++++++| +++++++|.+++.|++.+.++++++++++.++|+|+
T Consensus 274 e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 351 (359)
T cd03808 274 EGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRAEEEFDEE 351 (359)
T ss_pred cCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999899999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012132 449 HMAERIA 455 (470)
Q Consensus 449 ~~~~~~~ 455 (470)
.+++++.
T Consensus 352 ~~~~~~~ 358 (359)
T cd03808 352 IVVKKLL 358 (359)
T ss_pred HHHHHhh
Confidence 9998875
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=290.14 Aligned_cols=337 Identities=24% Similarity=0.285 Sum_probs=257.0
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcce------eeEecCChhhHHhhc
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISAKGQETINTAL 149 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 149 (470)
||+++++.+..||+++++..++++|.+.||+|.+++....................... ............+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999999888888999999999999999999999965443221111000000000000 001111234455667
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh------hhhcccccccceeeeehhhHHHHHHhhhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (470)
+||+||++.......+.. ..... ..+++++.|+........ .....+...+.+++.|....+.+.+
T Consensus 81 ~~dii~~~~~~~~~~~~~-~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~---- 152 (353)
T cd03811 81 KPDVVISHLTTTPNVLAL-LAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK---- 152 (353)
T ss_pred CCCEEEEcCccchhHHHH-HHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH----
Confidence 999999998711222222 22211 368889999876443221 2344567788888888888776665
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
.++.+..++.++|||+|.+.+.+.... . . .++.+.++++++++|++.+.||++.+++++..+.+
T Consensus 153 ~~~~~~~~~~vi~~~~~~~~~~~~~~~-------~-~--~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~------ 216 (353)
T cd03811 153 LLGIPPDKIEVIYNPIDIEEIRALAEE-------P-L--ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK------ 216 (353)
T ss_pred hhcCCccccEEecCCcChhhcCcccch-------h-h--hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh------
Confidence 455556789999999999877554321 0 0 34556778999999999999999999999998865
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
+.++++|+++|.+ +..+.+++.++++++.++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|+
T Consensus 217 -~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G~ 288 (353)
T cd03811 217 -EGPDARLVILGDG-----PLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALGT 288 (353)
T ss_pred -cCCCceEEEEcCC-----ccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhCC
Confidence 3478999999998 5678888999999999999999999999999999999999999 8999999999999999
Q ss_pred CEEecCCCCcceeeecCceeeeecCCCCChHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 384 PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPL---AKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 384 PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~l---a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
|||+++.|+..|++.++.+|++++++| .+++ .+++..+.++++.+.++++++++.+.++|+
T Consensus 289 PvI~~~~~~~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 289 PVVATDCPGPREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CEEEcCCCChHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 8888 788888888999999999988888888886
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=292.22 Aligned_cols=340 Identities=16% Similarity=0.137 Sum_probs=237.1
Q ss_pred EEEEeeccC--C-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe---------------
Q 012132 77 VLLVSHELS--L-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------- 138 (470)
Q Consensus 77 Il~v~~~~~--~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 138 (470)
||++++.+| + +|+...+.+++++|++. |+|++++.............+..... .+.+++
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~ 77 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCE--EVCVVPLDPRVARLRSLLGLL 77 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhh--eeEEeecCcHHHHHHHHhhhc
Confidence 689999864 3 77789999999999776 99999996543322211111111111 111111
Q ss_pred -----------cC----ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc----------h
Q 012132 139 -----------AK----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------K 193 (470)
Q Consensus 139 -----------~~----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~----------~ 193 (470)
.. ..+.+.+..++|+||+++.....++.. .. ...|.+++.|+.....+ .
T Consensus 78 ~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~----~~--~~~p~i~~~~d~~~~~~~~~~~~~~~~~ 151 (397)
T TIGR03087 78 TGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP----HV--RGVPRIVDFVDVDSDKWLQYARTKRWPL 151 (397)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc----cc--cCCCeEeehhhHHHHHHHHHHhccCcch
Confidence 00 112334457999999997654433221 01 12466777776421110 0
Q ss_pred h------------hhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHH
Q 012132 194 L------------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (470)
Q Consensus 194 ~------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (470)
. .....+..++.+++.|....+.+.+ ..+....++.+||||+|.+.|.+....
T Consensus 152 ~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f~~~~~~----------- 216 (397)
T TIGR03087 152 RWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFFSPDRDY----------- 216 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhcCCCccc-----------
Confidence 0 0112345677788888777666543 334456789999999999988654211
Q ss_pred HHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE
Q 012132 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (470)
Q Consensus 262 ~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (470)
.-.++.+..+++|+|++.+.||++.+++++.++...+.+ +.|+++|+|+|+|+ . .+++ +++..++|
T Consensus 217 -~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~~----~l~~~~~V 282 (397)
T TIGR03087 217 -PNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAVR----ALAALPGV 282 (397)
T ss_pred -cCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHHH----HhccCCCe
Confidence 011234567899999999999999998655444333332 35899999999983 2 2333 34445689
Q ss_pred EEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 342 ~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
+|+|+++++..+|+.||++|+||. +.||+|++++|||+||+|||+|+.++- .+...+++|++++ +| +++++++|.
T Consensus 283 ~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv~-~~--~~~la~ai~ 357 (397)
T TIGR03087 283 TVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLVA-AD--PADFAAAIL 357 (397)
T ss_pred EEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCcccc-cccccCCcceEeC-CC--HHHHHHHHH
Confidence 999999999999999999999997 369999999999999999999997542 3333456788887 66 999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
++++|++.+++|++++++++.++|||+.+++++.++|+
T Consensus 358 ~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 358 ALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999885
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=285.76 Aligned_cols=335 Identities=19% Similarity=0.186 Sum_probs=242.5
Q ss_pred EEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhh-------cce-----e---e-
Q 012132 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-------RGV-----Q---V- 136 (470)
Q Consensus 76 kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~---~- 136 (470)
|||++++.+++ ||+++++.+++++|.++||+|++++.................... ... . .
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 69999998875 566899999999999999999999965443221100000000000 000 0 0
Q ss_pred --EecCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhH
Q 012132 137 --ISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (470)
Q Consensus 137 --~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (470)
........+.+..+||+||++............... ...|++.+.|+.......... .....+.+++.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~---~~~~~i~~~hd~~~~~~~~~~--~~~~~d~ii~~s~~~~ 155 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARD---RGIPIVLTLHDYWLICPRQGL--FKKGGDAVIAPSRFLL 155 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHh---cCCCEEEEEeeeeeecchhhh--hccCCCEEEEeCHHHH
Confidence 000112344566899999999863222111111111 125788889976432211111 1122377788887776
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+.+.+ .+....++.+++||+|...+.+... +.+.++++++++|++.+.||++.+++++..
T Consensus 156 ~~~~~-----~~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~ 215 (359)
T cd03823 156 DRYVA-----NGLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKR 215 (359)
T ss_pred HHHHH-----cCCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCccccCHHHHHHHHHH
Confidence 66553 2333568999999999988754321 234677899999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+ ++++|+++|.+. ......... +..++|+++|+. +++.++|+.||++++||. +.|++|
T Consensus 216 l~~---------~~~~l~i~G~~~-----~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~-~~e~~~ 277 (359)
T cd03823 216 LPR---------GDIELVIVGNGL-----ELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSI-WPENFP 277 (359)
T ss_pred HHh---------cCcEEEEEcCch-----hhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCc-ccCCCC
Confidence 743 689999999983 333322222 556799999987 899999999999999997 379999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
++++|||+||+|||+++.++..|++.++.+|++++++| +++++++|.++++|++.++.+++++++.... +++++
T Consensus 278 ~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~~~~ 351 (359)
T cd03823 278 LVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRSI----EDQAE 351 (359)
T ss_pred hHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH----HHHHH
Confidence 99999999999999999999999999988999999998 9999999999999999999999999886643 89999
Q ss_pred HHHHHHH
Q 012132 453 RIAVVLK 459 (470)
Q Consensus 453 ~~~~~~~ 459 (470)
+++++|+
T Consensus 352 ~~~~~~~ 358 (359)
T cd03823 352 EYLKLYR 358 (359)
T ss_pred HHHHHhh
Confidence 9999886
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=293.43 Aligned_cols=340 Identities=18% Similarity=0.131 Sum_probs=250.4
Q ss_pred EEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhh-h-hcceee-----EecCChhhH
Q 012132 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-W-DRGVQV-----ISAKGQETI 145 (470)
Q Consensus 76 kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-----~~~~~~~~~ 145 (470)
||++++.++.+ ||+++++.+++++|.+.||+|++++.................. . ...... .........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 68899988766 7779999999999999999999999654432211110000000 0 000000 000111222
Q ss_pred HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------------hhhhcccccccceeeeehhh
Q 012132 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVT 213 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~ 213 (470)
....++|+||+++...... .....++++++|+....... ......+...+.+++.|...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~---------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL---------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred hhhcCCCeeeecccccCcc---------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 3447899999998655443 11235788899986432211 12233345667788888777
Q ss_pred HHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 012132 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+.+.+ .++.+..++.++|||+|...+...... . +.+.....++++++++|++.+.||++.+++++.
T Consensus 152 ~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 152 KRDLLR----YLGVPPDKIVVIPLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred HHHHHH----HhCcCHHHEEeeccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHH
Confidence 666554 566667789999999999887654321 1 333444567889999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~ 371 (470)
.+.+ ..++++|+++|.+... .....+..+++++.++|+++|+. +++.++|+.+|++++||. .|++
T Consensus 219 ~~~~-------~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~ 285 (365)
T cd03809 219 RLPA-------KGPDPKLVIVGKRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGF 285 (365)
T ss_pred HHHH-------hcCCCCEEEecCCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccC
Confidence 8865 3357999999987432 22333333677888999999987 889999999999999999 8999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 451 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~ 451 (470)
|++++|||++|+|||+++.|+..|++ +.+|+++++.| +++++++|.++++|++.+..+++++++.+ +.|+|++++
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~~~~e~~--~~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~sw~~~~ 360 (365)
T cd03809 286 GLPVLEAMACGTPVIASNISSLPEVA--GDAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARA-KRFSWEKTA 360 (365)
T ss_pred CCCHHHHhcCCCcEEecCCCCcccee--cCceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhCCHHHHH
Confidence 99999999999999999999999998 45789999888 99999999999999999999999999766 569999999
Q ss_pred HHHH
Q 012132 452 ERIA 455 (470)
Q Consensus 452 ~~~~ 455 (470)
+++.
T Consensus 361 ~~~~ 364 (365)
T cd03809 361 RRTL 364 (365)
T ss_pred HHHh
Confidence 9876
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=289.04 Aligned_cols=345 Identities=21% Similarity=0.209 Sum_probs=256.1
Q ss_pred EEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC------------
Q 012132 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (470)
Q Consensus 76 kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 141 (470)
|||++++.+++ ||++.++.+++++|.++||+|++++............. .......++.++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 69999998776 77799999999999999999999996543322111000 0000112333222110
Q ss_pred ---------hhhHH--hhcCCcEEEEcccchh-hhHHHHhhhcCCccccceeeEEeeeccccc----------------h
Q 012132 142 ---------QETIN--TALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------------K 193 (470)
Q Consensus 142 ---------~~~~~--~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~----------------~ 193 (470)
..... ...+||+||++++... .......... ...++++++|+...... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARL---KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHh---cCCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 00111 3678999999983322 2222222221 12578899997643221 1
Q ss_pred hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE
Q 012132 194 LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (470)
......+...+.+++.+....+.+. ..+.+..++.++|||++...+.+.... .. +.+...+.+++++
T Consensus 157 ~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i 223 (394)
T cd03794 157 KLERLIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVV 223 (394)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEE
Confidence 1112334566778888887766554 346677889999999999877654321 11 3445555778999
Q ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHH
Q 012132 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVA 351 (470)
Q Consensus 274 ~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~ 351 (470)
+++|++.+.||++.+++++.++.+ . ++++|+++|+| +..+.+++.+...++ ++|.++|+. +++.
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~-----~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~ 289 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDG-----PEKEELKELAKALGL-DNVTFLGRVPKEELP 289 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCc-----ccHHHHHHHHHHcCC-CcEEEeCCCChHHHH
Confidence 999999999999999999998854 2 68999999998 466777777766666 579999975 7899
Q ss_pred HHHHhcCEEEEccCCccccc-----chHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 352 PYLAAIDVLVQNSQAWGECF-----GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~-----g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++|+.||++++||. .|++ |++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.++++|
T Consensus 290 ~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~ 365 (394)
T cd03794 290 ELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGD--PEALAAAILELLDD 365 (394)
T ss_pred HHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCC--HHHHHHHHHHHHhC
Confidence 99999999999999 6765 888999999999999999999999998888999999988 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 427 VERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
++.++++++++++++.++|||+.++++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 366 PEERAEMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred hHHHHHHHHHHHHHHHHhhcHHHHHHhcC
Confidence 99999999999999998999999998863
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=285.23 Aligned_cols=350 Identities=26% Similarity=0.340 Sum_probs=266.2
Q ss_pred EEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhh------hhhhhcceee--------Eec
Q 012132 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------HKMWDRGVQV--------ISA 139 (470)
Q Consensus 77 Il~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~--------~~~ 139 (470)
||++++.+++ ||++.++.++++.|.+.||+|++++............... .......... ...
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 6888888876 6778999999999999999999999654432221110000 0000000000 001
Q ss_pred CChhhHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceeeeeh
Q 012132 140 KGQETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSH 211 (470)
Q Consensus 140 ~~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~ 211 (470)
........ ..+||+||++......+......... ..+++++.|+....... ......+..++.+++.|.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 12234445 78999999997655444443333221 25788888876543322 223344567788888888
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+.+.+ . +.+..++.+++||+|...+.+.... .. ++.+...+.++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~~----~-~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 158 ALADELKA----L-GIDPEKVTVIPNGVDTERFSPADRA-------EA--RKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred HHHHHHHH----h-cCCCCceEEcCCCcCcccCCCcchH-------HH--HhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 77776654 2 2567889999999999887654321 01 344555678999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCccc
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (470)
+..+.+ +.++++++++|.+ +..+.+++.++++++.++|.+.|+. +++.++|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~g~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~ 289 (377)
T cd03798 224 LARLLK-------KRPDVHLVIVGDG-----PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--RE 289 (377)
T ss_pred HHHHHh-------cCCCeEEEEEcCC-----cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hc
Confidence 998855 3478999999998 4667788888888998999999986 679999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
++|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.+++++++. ++++++++.+.+.|+|+.
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~ 365 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVAERFSWEN 365 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999998 99999999999999876 788889999999999999
Q ss_pred HHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEV 461 (470)
Q Consensus 450 ~~~~~~~~~~~~ 461 (470)
+++++.++|+++
T Consensus 366 ~~~~~~~~~~~l 377 (377)
T cd03798 366 VAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=283.23 Aligned_cols=273 Identities=18% Similarity=0.273 Sum_probs=211.5
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------chhhh---hcccccccceeeeehhhHH
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDY---VKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~ 215 (470)
..++||+|++.+....+. ++.... ..+.+.++|..+... +...+ ......++.+++.|....+
T Consensus 209 ~~~~di~i~dr~~~~~~~--~~~~~~---~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQA--VLENKG---PAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchH--HHhcCC---CceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 468999999875533322 111111 146777788533111 11111 1234456788888888777
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
.+.+.+.. ++...+++.+||||++...+.+.. ..++.+|+++||+.+.||++.+++|+.++
T Consensus 284 ~l~~~~~~-~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFKK-YYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhhh-hcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 76665432 334467899999998655432210 13457899999999999999999999988
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
.+ +.|+++|+|+|+| +..+.++++++++++.++|.|+|+. ++.++|+.||++|+||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G-----~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEG-----GEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 65 4589999999999 5778999999999999999999975 79999999999999998 99999999
Q ss_pred HHHHhcCCCEEecCCC-CcceeeecCceeeeecCCC--C---C-hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChh
Q 012132 376 IEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGK--E---G-ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 448 (470)
Q Consensus 376 lEAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d--~---~-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 448 (470)
+||||||+|||+++++ |.+|+|.+|.+|+++++++ . + +++|+++|.++++ ++.+.+|++++++.+ +.|||+
T Consensus 410 lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a-~~fs~~ 487 (500)
T TIGR02918 410 MEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA-EGFLTA 487 (500)
T ss_pred HHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH-HhcCHH
Confidence 9999999999999986 8999999999999998532 1 2 6789999999995 557899999999976 569999
Q ss_pred HHHHHHHHHHHHH
Q 012132 449 HMAERIAVVLKEV 461 (470)
Q Consensus 449 ~~~~~~~~~~~~~ 461 (470)
+++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=277.40 Aligned_cols=334 Identities=12% Similarity=0.111 Sum_probs=231.7
Q ss_pred ccEEEEEeeccCC--CchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHH--------------hhhhhh-hhcc--
Q 012132 74 SKLVLLVSHELSL--SGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIY--------------SLEHKM-WDRG-- 133 (470)
Q Consensus 74 ~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~--------------~~~~~~-~~~~-- 133 (470)
+++|.++++-.-| .|...--.--|-+|++. |++|+++.++-...+....+ .+...+ ...|
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 4789999987443 77654334446677777 79999998764432211111 111122 1112
Q ss_pred ----eeeEec------------CChhhHHhhcCCcEEEEcccchhhhH--HHHhhhcCCccccceeeEEeeeccccchhh
Q 012132 134 ----VQVISA------------KGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYFKLD 195 (470)
Q Consensus 134 ----~~~~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 195 (470)
+.+++. ......+..++|||||+++|....|. ........ .+++..+|.....|....
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl----~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF----NHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc----CCeEEEEeCCcHHHHhHh
Confidence 222332 22345566789999999998866665 33233322 257788887665543311
Q ss_pred h----h--------ccccc--ccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHH
Q 012132 196 Y----V--------KHLPL--VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (470)
Q Consensus 196 ~----~--------~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (470)
. . .++.. .+.+++.|..+... +...+. ..||||.+.|.+.... ..+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~L-----------~~~vI~-nVnGVDte~F~P~~r~--------~~~ 537 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDL-----------PKSVIC-NVHGVNPKFLKIGEKV--------AEE 537 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHHh-----------ccccee-ecccccccccCCcchh--------HHH
Confidence 1 0 11121 35566666444321 111122 2269999999876431 222
Q ss_pred HHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcE
Q 012132 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (470)
Q Consensus 262 ~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (470)
+++|++.....++|+||+.+.||++.+++|++.+.+ +.++++|+|+|+| |.++++++++.++++ +|
T Consensus 538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~-------~~pnvrLvIVGDG-----P~reeLe~la~eLgL--~V 603 (794)
T PLN02501 538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN-------ELDGFNLDVFGNG-----EDAHEVQRAAKRLDL--NL 603 (794)
T ss_pred HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh-------hCCCeEEEEEcCC-----ccHHHHHHHHHHcCC--EE
Confidence 556765555568899999999999999999998754 3478999999999 688999999999887 49
Q ss_pred EEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 342 ~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
.|+|..++...+|+.+|+||+||. .|+||++++||||||+|||+++.+|.. ++.++.+|+++ +| +++++++|.
T Consensus 604 ~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e-~V~~g~nGll~--~D--~EafAeAI~ 676 (794)
T PLN02501 604 NFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNE-FFRSFPNCLTY--KT--SEDFVAKVK 676 (794)
T ss_pred EecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCc-eEeecCCeEec--CC--HHHHHHHHH
Confidence 999999888899999999999999 999999999999999999999999854 46677788865 55 999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++++++..+..+.+ ...|||+.+++++++.-
T Consensus 677 ~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 677 EALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 99998765433322 23699999999998754
|
|
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=275.58 Aligned_cols=340 Identities=19% Similarity=0.165 Sum_probs=246.7
Q ss_pred EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH-------------------------------hh
Q 012132 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY-------------------------------SL 125 (470)
Q Consensus 77 Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-------------------------------~~ 125 (470)
+++++..+|.+-+|.++.+-++.|.+.+.+|+++............. ..
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 56788888866678999999999999999999987432221100000 00
Q ss_pred hhhhhhcceeeEecCCh----h-------------h----HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEE
Q 012132 126 EHKMWDRGVQVISAKGQ----E-------------T----INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI 184 (470)
Q Consensus 126 ~~~~~~~~~~~~~~~~~----~-------------~----~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (470)
.......+......... + . .....++|++|++...........+..... .++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~--~~~~i~~~ 159 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYL--RKRVISRA 159 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcC--CceEEEEe
Confidence 00001111100000000 0 0 001245677777653333322332332221 13588889
Q ss_pred eeeccc--cch----hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHH
Q 012132 185 HEMRGH--YFK----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (470)
Q Consensus 185 h~~~~~--~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (470)
|+.... ... ......+...+.++++|....+++.+ .++....++.+++||++.+.+.+..
T Consensus 160 Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~----~~~~~~~ki~vi~~gv~~~~~~~~~---------- 225 (407)
T cd04946 160 HGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK----RYPAYKEKIKVSYLGVSDPGIISKP---------- 225 (407)
T ss_pred ccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH----HCCCccccEEEEECCcccccccCCC----------
Confidence 964311 111 11222346778888888888776654 6677788899999999887653321
Q ss_pred HHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC--ceEEEEEeCCCCcChHHHHHHHHHHHhcC
Q 012132 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 259 ~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~--~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
..++.+.++++||+.+.||++.+++|+.++.+ +.| +++++++|+| +..+.+++++++++
T Consensus 226 -------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~-------~~p~~~l~~~iiG~g-----~~~~~l~~~~~~~~ 286 (407)
T cd04946 226 -------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAK-------ARPSIKIKWTHIGGG-----PLEDTLKELAESKP 286 (407)
T ss_pred -------CCCCCEEEEEeeccccccCHHHHHHHHHHHHH-------hCCCceEEEEEEeCc-----hHHHHHHHHHHhcC
Confidence 12567889999999999999999999999866 233 5778899998 67888999998888
Q ss_pred CCCcEEEeccc--CCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCC-CC
Q 012132 337 IQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG-KE 411 (470)
Q Consensus 337 l~~~V~~~g~~--~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~-d~ 411 (470)
..++|+|+|++ +++.++|+. +|++++||. .||+|++++|||++|+|||+|++||.+|++.++++|+++++. |
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~- 363 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPT- 363 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCC-
Confidence 88899999987 578899975 789999999 999999999999999999999999999999999999999875 5
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
+++++++|.++++|++.+++|+++|++++.++|+|+...+++.
T Consensus 364 -~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 -PNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 8999999999999999999999999999999999999998875
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=260.92 Aligned_cols=328 Identities=30% Similarity=0.311 Sum_probs=246.1
Q ss_pred hhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhh-h----------
Q 012132 128 KMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-Y---------- 196 (470)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-~---------- 196 (470)
.....+..+++...........+.|.|+.....+..++...+.. |...+++.|++|.....+.++. .
T Consensus 123 ~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~ 200 (495)
T KOG0853|consen 123 VAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALD 200 (495)
T ss_pred hhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcC--CcccceeEEeccchHHHhccccCccceeehhhhh
Confidence 33445556666555333333478899999887777777666655 7788899999998766554432 1
Q ss_pred ---hcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE
Q 012132 197 ---VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (470)
Q Consensus 197 ---~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (470)
.......+..++++..++..+...+. .+...++.+.+.++|.+.+.+... ....+.+...|.+.+....+..+
T Consensus 201 ~~e~e~~~~~~~~~~ns~~~~~~f~~~~~---~L~~~d~~~~y~ei~~s~~~~~~~-~~~~~~~~~~r~~~~v~~~d~~~ 276 (495)
T KOG0853|consen 201 KIEEETTGLAWKILVNSYFTKRQFKATFV---SLSNSDITSTYPEIDGSWFTYGQY-ESHLELRLPVRLYRGVSGIDRFF 276 (495)
T ss_pred hhhhhhhhccceEecchhhhhhhhhhhhh---hcCCCCcceeeccccchhcccccc-ccchhcccccceeeeecccceEe
Confidence 11123445667777777777766544 234455899999999888775211 11122345556667777767888
Q ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCC-----CCcChHHHHHHHHHHHhcCC-CCcEEEeccc
Q 012132 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI-QDRVHFVNKT 347 (470)
Q Consensus 274 ~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g-----~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~ 347 (470)
..+.++.+.||++++++++..+...+.+. ..++.+++++|+. ..+...+..++.++++++++ ++.|.|+...
T Consensus 277 ~siN~~~pgkd~~l~l~a~~~~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~ 354 (495)
T KOG0853|consen 277 PSINRFEPGKDQDLALPAFTLLHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPST 354 (495)
T ss_pred eeeeecCCCCCceeehhhHHhhhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCC
Confidence 89999999999999999999887766542 4478899999943 22333588999999999998 5778888877
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.+...|..++|..+.-+....|+||++++|||+||+|||+++.||..|+|.++.+|++++++++....+++++.++..|+
T Consensus 355 ~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 355 TRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDP 434 (495)
T ss_pred chHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCH
Confidence 66666766666544333322699999999999999999999999999999999999999996422337999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+.+.+|+++++++++++|||.++.+++.++..+...
T Consensus 435 ~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~ 470 (495)
T KOG0853|consen 435 ELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQ 470 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCC
Confidence 999999999999999999999999999998886653
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=255.12 Aligned_cols=296 Identities=17% Similarity=0.156 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHHHHh
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVL 169 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~ 169 (470)
.++-.-+-+.|...|++|+++-...-. +..+.. +++..+.|+..... ..
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~~~----~~ 61 (331)
T PHA01630 13 VRQKKLLEEHLKMLGHKVTVFEKPTLT--------------------------KYQLPP-GYPIYIYYTIFNSM----LF 61 (331)
T ss_pred HHHHHHHHHHHHHhCCeeEEEeccchh--------------------------hhhcCC-CCceeeehhhhhHH----HH
Confidence 356667788899999999988532211 001111 33444455433222 22
Q ss_pred hhcCCccccceeeEEeeeccccchhhhhcc--cccccceeeeehhhHHHHHHhhhhhhccC-CCceEEEecCCchhhhhH
Q 012132 170 KEDVPRVLPNVLWWIHEMRGHYFKLDYVKH--LPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEV 246 (470)
Q Consensus 170 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~ 246 (470)
...+++..+++++++|+.. .....+... ....+.+++.|....+.+.+ .+++ .+++.+||||+|.+.|.+
T Consensus 62 ~~~~~~~~~~~v~e~~~~~--~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~ 134 (331)
T PHA01630 62 WKGIPHVGKNIVFEVADTD--AISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEY 134 (331)
T ss_pred HhhccccCCceEEEEEeec--hhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCC
Confidence 2334555568888888732 233333333 35688899999988877653 3443 467999999999988764
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHH
Q 012132 247 AEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFES 326 (470)
Q Consensus 247 ~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~ 326 (470)
.... ..++++++++|++.++||++.+++|++++.+ +.++++++++|++. ...
T Consensus 135 ~~~~----------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~-----~~~ 186 (331)
T PHA01630 135 KPKE----------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNM-----LDP 186 (331)
T ss_pred Cccc----------------cCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCcc-----cch
Confidence 3211 1345777788899999999999999998865 34789999999762 222
Q ss_pred HHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeee
Q 012132 327 ELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH 406 (470)
Q Consensus 327 ~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~ 406 (470)
.+ .++.+ +......+++..+|+.||++++||. .|+||++++||||||+|||+|+.||.+|++.++.+|+++
T Consensus 187 ~l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv 257 (331)
T PHA01630 187 RL------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI 257 (331)
T ss_pred hh------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe
Confidence 21 12222 1111224899999999999999999 899999999999999999999999999999999888887
Q ss_pred cCC-----------------CCChHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 407 PVG-----------------KEGITPLAKNIVKLATHV--ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 407 ~~~-----------------d~~~~~la~~i~~ll~~~--~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+.+ +.|.+++++++.+++.|+ +.+.++..++.+.+.++|||++++++++++|++
T Consensus 258 ~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 258 KSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred eecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 643 112788999999998873 444555555555667889999999999999975
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=262.85 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=211.4
Q ss_pred EEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH---------HHhhhhhhhhcceeeEe-cCChhh
Q 012132 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV---------IYSLEHKMWDRGVQVIS-AKGQET 144 (470)
Q Consensus 76 kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~ 144 (470)
||++++.++. .||+|+++.+|++.|.+. +|..+........... ...+........ .+.+ ......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYR-KYLPLMPLAIE 77 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHh-hhCchhhHHHH
Confidence 6899998876 588899999999998753 3322222211111000 000000000000 0000 001112
Q ss_pred HHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-------ccc------------------hhhhhcc
Q 012132 145 INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------HYF------------------KLDYVKH 199 (470)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-------~~~------------------~~~~~~~ 199 (470)
.....++|+|++++......+. .....+.++++|.... .+. .....+.
T Consensus 78 ~~~~~~~D~v~~~~~~~~~~~~-------~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (351)
T cd03804 78 QFDLSGYDLVISSSHAVAKGVI-------TRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRS 150 (351)
T ss_pred hccccCCCEEEEcCcHHhcccc-------CCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 2345689999988654333221 0112456666774211 000 0011223
Q ss_pred cccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec
Q 012132 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (470)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl 279 (470)
+...+.+++.|....+.+.+ .++ .+..+|+||+|.+.|.+.. .....++++||+
T Consensus 151 ~~~~d~ii~~S~~~~~~~~~----~~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~~ 204 (351)
T cd03804 151 AARVDYFIANSRFVARRIKK----YYG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGRL 204 (351)
T ss_pred hcCCCEEEECCHHHHHHHHH----HhC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEcC
Confidence 46778888888888777654 333 2468999999988775432 233458899999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhc
Q 012132 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (470)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~a 357 (470)
.+.||++.+++|++++ + ++|+|+|+| +..+++++ +..++|+|+|++ +++.++|+.|
T Consensus 205 ~~~K~~~~li~a~~~~-----------~-~~l~ivG~g-----~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 205 VPYKRIDLAIEAFNKL-----------G-KRLVVIGDG-----PELDRLRA-----KAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred ccccChHHHHHHHHHC-----------C-CcEEEEECC-----hhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhC
Confidence 9999999999999865 5 899999998 45555555 446799999987 5599999999
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
|++++||. |+||++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++ .+.+++
T Consensus 263 d~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~---~~~~~~ 334 (351)
T cd03804 263 RAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED---FDPQAI 334 (351)
T ss_pred CEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---cCHHHH
Confidence 99999994 999999999999999999999999999999999999999988 9999999999999874 223344
Q ss_pred HHHHHHHcChhHHHHHH
Q 012132 438 YERVKEIFQEHHMAERI 454 (470)
Q Consensus 438 ~~~~~~~fs~~~~~~~~ 454 (470)
++.+ +.|+|+++.+++
T Consensus 335 ~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 335 RAHA-ERFSESRFREKI 350 (351)
T ss_pred HHHH-HhcCHHHHHHHh
Confidence 4444 349999988765
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=246.43 Aligned_cols=307 Identities=18% Similarity=0.169 Sum_probs=210.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
||-++++..++ ....+..+++..|++.|--|++++..-.-+.. +.-+.+++
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---------------- 51 (335)
T PHA01633 1 MKTAILTMNYS--SISNVSEDIAEVLRENGEIVTITKNPFYIPKA-----------EKLIVFIP---------------- 51 (335)
T ss_pred CceEEEEechh--hhhhHHHHHHHHHHhCCcEEEEecCCcccCcc-----------ceEEEEee----------------
Confidence 45566665442 33478899999999999888888732111000 00011111
Q ss_pred EEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEE
Q 012132 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (470)
.|-+....++...... . ...+++.++|+... ...+.+.+.+-..++++|..+.+.+.+ .|++.. .+
T Consensus 52 -~~~~~~~~~~~~~~~~--~-~~~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~~-----~G~~~~--i~ 117 (335)
T PHA01633 52 -FHPPSLNPYLYAYYQF--K-GKKYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQE-----VGLQVD--LP 117 (335)
T ss_pred -cCCcccchHHhhhhhh--c-CCCceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHHH-----hCCCCc--ee
Confidence 1222222222221111 1 11467788887653 134444455556788888888776653 355544 35
Q ss_pred EecCCchhhhhHhhhHHHHHHHHHHHHHHcCCC-CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC----ce
Q 012132 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVR-NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP----SV 309 (470)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~----~~ 309 (470)
|+||+|.+.|.+.... ..++|++++.. ++.++++++||+.++||++.+++|++++.+ +.| ++
T Consensus 118 I~~GVD~~~f~p~~~~------~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~-------~~p~~~~~i 184 (335)
T PHA01633 118 VFHGINFKIVENAEKL------VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNT-------KYPDIAKKI 184 (335)
T ss_pred eeCCCChhhcCccchh------hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHH-------hCCCccccE
Confidence 7899999988764321 23466666653 467889999999999999999999998865 234 46
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec---c--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g---~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++++|.+ ..++++++++|+|+| + .+++.++|++||++|+||. .|+||++++|||+||+|
T Consensus 185 ~l~ivG~~-------------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~P 249 (335)
T PHA01633 185 HFFVISHK-------------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTP 249 (335)
T ss_pred EEEEEcHH-------------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCC
Confidence 88887742 124567888999995 3 3679999999999999999 99999999999999999
Q ss_pred EEecCCCCcceeeec------------------CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 385 VLGTAAGGTTEIVVN------------------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 385 vI~s~~~g~~e~v~~------------------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
||+++.|+++|++.+ ...|+.++..| +++++++|.++++..+ +...+.++++.+++ |+
T Consensus 250 VVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~-f~ 325 (335)
T PHA01633 250 VIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKLKELAKK-YD 325 (335)
T ss_pred EEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHHHHHHHh-cC
Confidence 999999999997542 23466777777 9999999999965422 23336677777644 99
Q ss_pred hhHHHHHHHH
Q 012132 447 EHHMAERIAV 456 (470)
Q Consensus 447 ~~~~~~~~~~ 456 (470)
|++++++|++
T Consensus 326 ~~~~~~~~~~ 335 (335)
T PHA01633 326 IRNLYTRFLE 335 (335)
T ss_pred HHHHHHHhhC
Confidence 9999999863
|
|
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=261.51 Aligned_cols=263 Identities=20% Similarity=0.285 Sum_probs=209.0
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--------h---hhhhcccccccceeeeehhhHHHH
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------K---LDYVKHLPLVAGAMIDSHVTAEYW 217 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--------~---~~~~~~~~~~~~~~~~s~~~~~~~ 217 (470)
.++|+++++.+....+...... .+ .+.+.++|+.+.... . ......+...+.+++.|....+.+
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~--~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMK--KA---AKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCEEEECCccccchhHHhcc--CC---ceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHH
Confidence 6899999998765554111111 11 245667775432111 1 111223456677777777776665
Q ss_pred HHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHH
Q 012132 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (470)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~ 297 (470)
.+ .++.. .++.+||||++...+.+... ....+..++++||+.+.||++.+++|+.++.+
T Consensus 173 ~~----~~~~~-~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 173 QK----QFGNY-NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred HH----HhCCC-CceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 54 44432 34899999999887654310 11355778999999999999999999998865
Q ss_pred HHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHH
Q 012132 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 298 ~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (470)
+.|+++|+|+|.| +....+++.++++++.++|.|.|+.+++.++|+.||++|+||. .|+||++++|
T Consensus 232 -------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYG-----DEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeC-----chHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 4589999999998 4667788888999999999999998999999999999999999 8999999999
Q ss_pred HHhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 378 AMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 378 Ama~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
||++|+|||+++.+ |..+++.++.+|++++++| +++++++|..+++|++.++++++++++.. ++|||++++++|
T Consensus 298 Ama~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~w 372 (372)
T cd04949 298 ALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYENA-ERYSEENVWEKW 372 (372)
T ss_pred HHhCCCCEEEecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHhcC
Confidence 99999999999987 8999999999999999998 99999999999999999999999999985 679999998764
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=251.79 Aligned_cols=308 Identities=12% Similarity=0.059 Sum_probs=210.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc-eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---Ch-------h
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQ-------E 143 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~ 143 (470)
.++.+++- +-.|++..+..++..|.++|+ +|++++....... .+.....++.++..+ .. .
T Consensus 5 ~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~-------~~~~~~~~v~v~r~~~~~~~~~~~~~~~ 75 (371)
T PLN02275 5 GRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPI-------PALLNHPSIHIHLMVQPRLLQRLPRVLY 75 (371)
T ss_pred cEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCC-------HHHhcCCcEEEEECCCcccccccccchH
Confidence 34555542 446778899999999999875 8999985443221 222223345554442 00 0
Q ss_pred ------h------------HHhhcCCcEEEEcccchhh--hHHHHhhhcCCccccceeeEEeeeccccc-----------
Q 012132 144 ------T------------INTALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------- 192 (470)
Q Consensus 144 ------~------------~~~~~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~----------- 192 (470)
. ..+..+||+||+|++.... +......... ..|++.++|+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~---~~p~v~~~h~~~~~~~~~~~~~~~~~~ 152 (371)
T PLN02275 76 ALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLR---RAKFVIDWHNFGYTLLALSLGRSHPLV 152 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHh---CCCEEEEcCCccHHHHhcccCCCCHHH
Confidence 0 1245799999998755322 1222222111 2477788887531110
Q ss_pred ---hhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCC
Q 012132 193 ---KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 269 (470)
Q Consensus 193 ---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 269 (470)
.......++..+.+++.|....+.+.+ .++++ +.+||||. .+.|.+.... ..+. +++
T Consensus 153 ~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-----------~~~~-~~~ 212 (371)
T PLN02275 153 RLYRWYERHYGKMADGHLCVTKAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-----------IRLR-PNR 212 (371)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-----------hccc-CCC
Confidence 011122345678888888888776643 44543 88999995 4555443211 0111 134
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc----------ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCC
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 339 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~----------~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~ 339 (470)
..+++++||+.+.||++.+++|+..+...+...+ ..+|+++|+|+|+| +..++++++++++++++
T Consensus 213 ~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~ 287 (371)
T PLN02275 213 PALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-----PQKAMYEEKISRLNLRH 287 (371)
T ss_pred cEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCc
Confidence 4677889999999999999999987743221100 02488999999999 57899999999999976
Q ss_pred cEEEec-c--cCCHHHHHHhcCEEEEccCC-cccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHH
Q 012132 340 RVHFVN-K--TLTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP 415 (470)
Q Consensus 340 ~V~~~g-~--~~~~~~~~~~aDv~v~pS~~-~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~ 415 (470)
+.|.+ + .+++..+|++||++|+|+.. +.|++|++++||||||+|||+++.||.+|++.++.+|++++ | +++
T Consensus 288 -v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~--~~~ 362 (371)
T PLN02275 288 -VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--S--SSE 362 (371)
T ss_pred -eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--C--HHH
Confidence 77765 4 48999999999999986421 25899999999999999999999999999999999999997 5 899
Q ss_pred HHHHHHHHH
Q 012132 416 LAKNIVKLA 424 (470)
Q Consensus 416 la~~i~~ll 424 (470)
|+++|.+++
T Consensus 363 la~~i~~l~ 371 (371)
T PLN02275 363 LADQLLELL 371 (371)
T ss_pred HHHHHHHhC
Confidence 999998874
|
|
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=239.29 Aligned_cols=372 Identities=18% Similarity=0.137 Sum_probs=263.9
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhh------------------h-h
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM------------------W-D 131 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~------------------~-~ 131 (470)
|||++++.+..| ||-.-++..|.++|+++|++|.|+.+..+.........+.... . .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 789999988654 6668999999999999999999999766532211111000000 0 0
Q ss_pred cceeeEecC------C------------hh---------hHH-hh---cCCcEEEEcccchhhhHHHHhhhcCCccccce
Q 012132 132 RGVQVISAK------G------------QE---------TIN-TA---LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (470)
Q Consensus 132 ~~~~~~~~~------~------------~~---------~~~-~~---~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (470)
.++.++-.. + .+ ... .- ..|||||+|+..+++....+..........+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 001111110 0 00 001 11 37999999997766544433332211234689
Q ss_pred eeEEeeeccccc-h-------------------------hhhhcccccccceeeeehhhHHHHHHhh-----hhhhccCC
Q 012132 181 LWWIHEMRGHYF-K-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLRIKM 229 (470)
Q Consensus 181 ~~~~h~~~~~~~-~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~ 229 (470)
++|+|+...... . ...+..+..++.+.++|.+.+....... ...+....
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~ 240 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRS 240 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhcc
Confidence 999997532110 0 0011223456677777877765554110 01111233
Q ss_pred CceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHH
Q 012132 230 PDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~~l~ 296 (470)
.++.-|.||+|.+...|..+.. .+.+.+..+++++|++. +.+++.++||+..+||+|.+++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 6789999999999988876541 25566788999999984 4599999999999999999999999987
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCH-HHHHHhcCEEEEccCCcccccchHH
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV-APYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~-~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
+ ...++++.|.|. +.+++.+..+++++.. ......|+.+.+ ..+|+.+|++++||+ .|+||++-
T Consensus 321 ~---------~~~~~vilG~gd---~~le~~~~~la~~~~~-~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~q 385 (487)
T COG0297 321 E---------QGWQLVLLGTGD---PELEEALRALASRHPG-RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQ 385 (487)
T ss_pred H---------hCceEEEEecCc---HHHHHHHHHHHHhcCc-eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHH
Confidence 6 458999999983 3589999999998754 233445565544 556899999999999 99999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeec--------CceeeeecCCCCChHHHHHHHHHHHh---CHHH-HHHHHHHHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVN--------GTTGLLHPVGKEGITPLAKNIVKLAT---HVER-RLTMGKRGYERVKE 443 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~--------~~~G~l~~~~d~~~~~la~~i~~ll~---~~~~-~~~~~~~a~~~~~~ 443 (470)
++||.+|+++|+..+||..+.|.+ ..+|+++.+.+ +++++.+|.+.+. +++. ++.+..++.. .
T Consensus 386 l~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~--~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~ 460 (487)
T COG0297 386 LYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTN--PDHLANALRRALVLYRAPPLLWRKVQPNAMG---A 460 (487)
T ss_pred HHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCC--HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---c
Confidence 999999999999999999999875 57999999988 9999999998876 4444 7777776665 5
Q ss_pred HcChhHHHHHHHHHHHHHHHhhh
Q 012132 444 IFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
.|+|+..+.+|.++|+.++....
T Consensus 461 d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 461 DFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred ccCchhHHHHHHHHHHHHhcccc
Confidence 69999999999999999987543
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=239.27 Aligned_cols=323 Identities=15% Similarity=0.081 Sum_probs=221.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (470)
||||++++... ||.+++..+|+++|.++||+|++++...... .......|+.++...
T Consensus 1 ~~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~l 70 (357)
T PRK00726 1 MKKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGME--------ARLVPKAGIEFHFIPSGGLRRKGSLANL 70 (357)
T ss_pred CcEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchh--------hhccccCCCcEEEEeccCcCCCChHHHH
Confidence 38899988544 5778889999999999999999998644211 111111344333221
Q ss_pred -----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeee
Q 012132 141 -----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (470)
Q Consensus 141 -----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
....+.+..+||+||+|+........ ...... ..|++++.|+...... ....+...+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~-~~~~~~---~~p~v~~~~~~~~~~~---~r~~~~~~d~ii~~ 143 (357)
T PRK00726 71 KAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGG-LAARLL---GIPLVIHEQNAVPGLA---NKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHH-HHHHHc---CCCEEEEcCCCCccHH---HHHHHHHhchheEC
Confidence 11234456789999999855433222 222211 2466666554322211 11123344555554
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
+... +. . .+..++++++||++.+.+.+.. .+++++++++.++++++|+....|++..++
T Consensus 144 ~~~~---~~-----~--~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 202 (357)
T PRK00726 144 FPGA---FP-----E--FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAV 202 (357)
T ss_pred chhh---hh-----c--cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHH
Confidence 4311 11 1 4678899999999987654321 123466667778888999888888765555
Q ss_pred -HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 -HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 -~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+|++++.+ . + ..++++|+| +. +.+.+..+ +++. |.+.|+.+++.++|+.||+++.+|-
T Consensus 203 ~~a~~~~~~-------~-~-~~~~~~G~g-----~~-~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~g--- 261 (357)
T PRK00726 203 PEALALLPE-------A-L-QVIHQTGKG-----DL-EEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRAG--- 261 (357)
T ss_pred HHHHHHhhh-------C-c-EEEEEcCCC-----cH-HHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECCC---
Confidence 88877632 1 3 567788998 33 45554555 6664 9999999999999999999997663
Q ss_pred cccchHHHHHHhcCCCEEecCCCCc--------ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
+++++|||++|+|+|++..++. .+.+.+.++|+++++.|.++++|+++|.++++|++.++.|+++++++
T Consensus 262 ---~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 262 ---ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred ---HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 6899999999999999876532 35566778999998876558999999999999999999999999998
Q ss_pred HHHHcChhHHHHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~ 459 (470)
+ +.++.+.+++.+.++.+
T Consensus 339 ~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 339 G-KPDAAERLADLIEELAR 356 (357)
T ss_pred C-CcCHHHHHHHHHHHHhh
Confidence 6 44888999888877654
|
|
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=235.73 Aligned_cols=335 Identities=15% Similarity=0.139 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee--EecC---ChhhHHhhcCCcEEEEcccchh
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAK---GQETINTALKADLIVLNTAVAG 162 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~DiV~~~~~~~~ 162 (470)
|-...+..|++.|.++++++.++........... .......++.+ .+.. ..+.+.+..+||+||++....
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~----~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~~- 135 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMTPTGSER----AQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETEL- 135 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHH----HHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecch-
Confidence 4458899999999998766544332111111111 11111222322 3332 234566789999999874322
Q ss_pred hhHHHHhhhcCCccccceeeEEeeecccc------chhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEe
Q 012132 163 KWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236 (470)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ 236 (470)
|...+..... ...|++.+.|...... +.......+..++.+++.|....+.+. .+|++.+ +.+++
T Consensus 136 -~~~~l~~~~~--~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~vi~ 206 (425)
T PRK05749 136 -WPNLIAELKR--RGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VTVTG 206 (425)
T ss_pred -hHHHHHHHHH--CCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cEecc
Confidence 2111111111 1234544444322111 112233445667888888888876665 4576666 88998
Q ss_pred cCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC
Q 012132 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (470)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~ 316 (470)
|+ +.+.+.+... ......+|++++ +++.+++++|+ ..|+.+.+++|++++.+ ++|+++|+|+|+
T Consensus 207 n~-~~d~~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~-------~~~~~~liivG~ 270 (425)
T PRK05749 207 NL-KFDIEVPPEL----AARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLK-------QFPNLLLILVPR 270 (425)
T ss_pred cc-cccCCCChhh----HHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHH-------hCCCcEEEEcCC
Confidence 85 2322211111 112455777777 45667777775 36889999999998765 458999999999
Q ss_pred CCCcChHHH-HHHHHHHHhcCCCC-------------cEEEecccCCHHHHHHhcCEEEE-ccCCcccccchHHHHHHhc
Q 012132 317 DMNAQTKFE-SELRNYVMQKKIQD-------------RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 317 g~~~~~~~~-~~l~~~~~~~~l~~-------------~V~~~g~~~~~~~~~~~aDv~v~-pS~~~~E~~g~~~lEAma~ 381 (470)
| +.+ ++++++++++|+.. +|.+.+...++..+|+.||++++ +|. .|++|.+++|||+|
T Consensus 271 g-----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEAma~ 343 (425)
T PRK05749 271 H-----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEPAAF 343 (425)
T ss_pred C-----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHHHHh
Confidence 8 454 78999999988852 34444445689999999999655 676 79999999999999
Q ss_pred CCCEEecCC-CCcceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 382 QLPVLGTAA-GGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 382 G~PvI~s~~-~g~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|+|||+++. ++..|+++.. .+|.+++++| +++|+++|.++++|++.+++|++++++++.++ ....+++.+++.
T Consensus 344 G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~~~~~~~~~l~ 418 (425)
T PRK05749 344 GVPVISGPHTFNFKEIFERLLQAGAAIQVED--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QGALQRTLQLLE 418 (425)
T ss_pred CCCEEECCCccCHHHHHHHHHHCCCeEEECC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHH
Confidence 999999864 5566665442 4688888888 99999999999999999999999999999764 467788888888
Q ss_pred HHHHh
Q 012132 460 EVLKK 464 (470)
Q Consensus 460 ~~l~~ 464 (470)
+.+++
T Consensus 419 ~~l~~ 423 (425)
T PRK05749 419 PYLPP 423 (425)
T ss_pred Hhccc
Confidence 77654
|
|
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=239.82 Aligned_cols=288 Identities=16% Similarity=0.101 Sum_probs=199.0
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-------hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-------LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+.|+|++|+....... ..++...+. .++.+..|...+..-. ....+.+-.++.+...+......+.+..
T Consensus 130 ~~~d~iwihDyhl~llp-~~lr~~~~~--~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLLP-QMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHHH-HHHHhhCCC--CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 36799999997654433 333333332 4788889965533311 1112222233444444433333333332
Q ss_pred hhhhcc------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
....+. ...++.++|||||.+.|.+..... ..++..++..+...++++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASP---EVQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCc---hhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222221 234689999999999997653221 11233334445556788999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCc----eEEEEEeCCCCcChH----HHHHHHHHHHhcCCC------CcEEEe-cc--cCCHHH
Q 012132 290 HSFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTK----FESELRNYVMQKKIQ------DRVHFV-NK--TLTVAP 352 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~----~~l~ivG~g~~~~~~----~~~~l~~~~~~~~l~------~~V~~~-g~--~~~~~~ 352 (470)
+|++.+.+ ++|+ ++|+++|.+..++.+ +.+++++++.+++.. ..|+++ |. .+++..
T Consensus 284 ~A~~~ll~-------~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~ 356 (460)
T cd03788 284 LAFERLLE-------RYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAA 356 (460)
T ss_pred HHHHHHHH-------hChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHH
Confidence 99998866 3354 778888765322212 444555555443321 235554 54 489999
Q ss_pred HHHhcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-H
Q 012132 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-V 427 (470)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~ 427 (470)
+|+.||++|+||. .||||++++|||+||+| ||+|+.+|..+. +.+|+++++.| +++++++|.+++++ +
T Consensus 357 ~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d--~~~la~ai~~~l~~~~ 429 (460)
T cd03788 357 LYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYD--IDEVADAIHRALTMPL 429 (460)
T ss_pred HHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCC--HHHHHHHHHHHHcCCH
Confidence 9999999999999 99999999999999999 999998888776 46799999999 99999999999985 5
Q ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
+.++.+++++++++. .||++.++++++.-
T Consensus 430 ~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~ 458 (460)
T cd03788 430 EERRERHRKLREYVR-THDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHh
Confidence 778888999999885 59999999988753
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=233.76 Aligned_cols=289 Identities=17% Similarity=0.139 Sum_probs=204.5
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------chhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
..-|+|.+|+...... ...++...+. .++.+..|..++.. +.....+.+-.++.+...+......+....
T Consensus 126 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLMLL-PAMLRELGVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhHH-HHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 3458999998765443 3344444443 46777888654332 112233333344555555555554444443
Q ss_pred hhhhcc-----------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
.+.++. ...++.++|||+|.+.|.+.............+|++++ ++.+|+++||+++.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CCeEEEEccccccccCHHHHHH
Confidence 333332 34568899999999999876433222222345777763 6788999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCc----eEEEEEeCCCCcChHHHHHHHHHHHhc--------CCCC--cEEEec-c--cCCHHHH
Q 012132 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVN-K--TLTVAPY 353 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~----~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~l~~--~V~~~g-~--~~~~~~~ 353 (470)
|++++.+ ++|+ +.|+++|....++.+...++++.++++ +..+ .+++++ . .+++.++
T Consensus 280 A~~~ll~-------~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 280 AFERFLE-------EHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHH-------hCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 9999866 3354 668877643222224555666666554 1111 155554 3 4899999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHH
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVE 428 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~ 428 (470)
|++||++++||. .||||++++||||||+| +|+|+.+|..+.+. +|++++|.| +++++++|.++++ +++
T Consensus 353 y~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d--~~~lA~aI~~aL~~~~~ 425 (456)
T TIGR02400 353 YRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYD--IDGMADAIARALTMPLE 425 (456)
T ss_pred HHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCC--HHHHHHHHHHHHcCCHH
Confidence 999999999999 99999999999999999 99999988888773 799999999 9999999999998 577
Q ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 429 RRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 429 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.++++.+++++++.+ ||+..+++++++-+
T Consensus 426 er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 426 EREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 888889999999865 99999999988644
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=231.39 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=198.8
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc--hh---------------------------hhhcc
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KL---------------------------DYVKH 199 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~--~~---------------------------~~~~~ 199 (470)
.++|++|+|....+..+..+.+... ..+.++|.|....... .. .....
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~---~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKV---DVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCC---CCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 5799999999776665544433222 2578999996432221 00 01112
Q ss_pred cccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHH-----H----HHHHHHHHHHcCCCCCC
Q 012132 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA-----K----RVLREHVRESLGVRNED 270 (470)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~-----~----~~~~~~~r~~~~~~~~~ 270 (470)
...++.++++|..+..... .-|+.++++ |||||+|.+.|....+... + ...+..++.+++++.++
T Consensus 224 a~~Ad~fttVS~it~~E~~----~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAE----HLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEEECChHHHHHHH----HHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 2345667777777755544 367777776 9999999999876542110 0 11234467778887777
Q ss_pred eEEEE-Eeeccc-CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC-------hHHHHHH-------------
Q 012132 271 LLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-------TKFESEL------------- 328 (470)
Q Consensus 271 ~~i~~-vGrl~~-~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~-------~~~~~~l------------- 328 (470)
.++++ +||++. +||+|.+|+|++++...++..+.+..=+-|+|+-.+...- .+..+++
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77766 799988 9999999999999988777643222223444443331100 0111111
Q ss_pred ------------------------------------------------------HHHHHhcCCC----Cc--EEEecc--
Q 012132 329 ------------------------------------------------------RNYVMQKKIQ----DR--VHFVNK-- 346 (470)
Q Consensus 329 ------------------------------------------------------~~~~~~~~l~----~~--V~~~g~-- 346 (470)
-..+++++|- ++ |+|++.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 1122222232 22 455552
Q ss_pred -------cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc----ceeeecC-ceeeeecCCC----
Q 012132 347 -------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNG-TTGLLHPVGK---- 410 (470)
Q Consensus 347 -------~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~~~d---- 410 (470)
-.+..++|+.||++|+||. +|+||++++||||||+|||+|+.+|. .|++.++ ..|+.+.+.+
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~ 535 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSP 535 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccch
Confidence 1457889999999999999 99999999999999999999999988 5666544 3566665221
Q ss_pred -CChHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 411 -EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 411 -~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+++++++++|.++++. +.++.+.++++ +...+.|+|++.++.|.+.|..++.
T Consensus 536 ~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 536 DESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 1378899999998854 45666655543 3445679999999999999998875
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=230.86 Aligned_cols=338 Identities=11% Similarity=0.062 Sum_probs=225.8
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCCCCCc---hhH-HHhh----------hhhhhhcceeeE
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEE---DEV-IYSL----------EHKMWDRGVQVI 137 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~---~~~-~~~~----------~~~~~~~~~~~~ 137 (470)
+.||||+++..+ ||| ...+..++++|.++||+|++++....... ... ...+ .......+-...
T Consensus 3 ~~~rili~t~~~--G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHY--GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCC--CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 467999999776 544 68899999999999999777763322111 010 0000 000000000000
Q ss_pred e-----------cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccce
Q 012132 138 S-----------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGA 206 (470)
Q Consensus 138 ~-----------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (470)
. ......+.+..+||+||++.+..... .+.+... ...|++..+++.. .......+..+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~~--~~ip~~~~~td~~-----~~~~~~~~~ad~i 151 (380)
T PRK13609 81 DKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP--ELKKQTG--ISIPTYNVLTDFC-----LHKIWVHREVDRY 151 (380)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH--HHHHhcC--CCCCeEEEeCCCC-----CCcccccCCCCEE
Confidence 0 12234555678999999987654322 2222211 1245554444321 1112234577888
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEeecccCCCH
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQ 285 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGrl~~~Kg~ 285 (470)
++.+....+.+. ++|++.+++.+++++++.....+.. +..+++++++++++ .++++.|++...|++
T Consensus 152 ~~~s~~~~~~l~-----~~gi~~~ki~v~G~p~~~~f~~~~~--------~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 152 FVATDHVKKVLV-----DIGVPPEQVVETGIPIRSSFELKIN--------PDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred EECCHHHHHHHH-----HcCCChhHEEEECcccChHHcCcCC--------HHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 888877765554 4578888888887777543321111 23478889998765 456667888888999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
+.+++++.+. ++++++++|++. ++..+.+++++++++ ++|+|+|+++++.++|+.||+++.
T Consensus 219 ~~li~~l~~~-----------~~~~~viv~G~~---~~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~--- 279 (380)
T PRK13609 219 KELCQSLMSV-----------PDLQVVVVCGKN---EALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT--- 279 (380)
T ss_pred HHHHHHHhhC-----------CCcEEEEEeCCC---HHHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe---
Confidence 9999887532 688988875421 146778888877665 689999999999999999999883
Q ss_pred CcccccchHHHHHHhcCCCEEecC-CCCcc----eeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTA-AGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~-~~g~~----e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
++.|++++|||+||+|||+++ .+|.. +.+. ++|..+...| +++++++|.++++|++.+++|++++++.
T Consensus 280 ---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 280 ---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKLLQMKEAMKSL 352 (380)
T ss_pred ---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 345899999999999999986 55521 2332 2455555666 9999999999999999999999999876
Q ss_pred HHHHcChhHHHHHHHHHHHHH
Q 012132 441 VKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~ 461 (470)
.. .++++++++.+++.+...
T Consensus 353 ~~-~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 353 YL-PEPADHIVDDILAENHVE 372 (380)
T ss_pred CC-CchHHHHHHHHHHhhhhh
Confidence 64 489999999998887654
|
|
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=229.58 Aligned_cols=313 Identities=15% Similarity=0.119 Sum_probs=210.3
Q ss_pred EEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec--C--------------
Q 012132 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--K-------------- 140 (470)
Q Consensus 77 Il~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------- 140 (470)
|++.+... ||..+++..++++|.++||+|++++....... ......++.+... .
T Consensus 2 ~~~~~~~~--gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (350)
T cd03785 2 ILIAGGGT--GGHIFPALALAEELRERGAEVLFLGTKRGLEA--------RLVPKAGIPLHTIPVGGLRRKGSLKKLKAP 71 (350)
T ss_pred EEEEecCc--hhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--------hcccccCCceEEEEecCcCCCChHHHHHHH
Confidence 55555333 56688999999999999999999986543211 1111122322211 1
Q ss_pred --------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehh
Q 012132 141 --------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHV 212 (470)
Q Consensus 141 --------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~ 212 (470)
....+.+..+||+||+|..........+.+. . ..|++.+.|+..... .........+.+++.+..
T Consensus 72 ~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~-~---~~p~v~~~~~~~~~~---~~~~~~~~~~~vi~~s~~ 144 (350)
T cd03785 72 FKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKL-L---GIPLVIHEQNAVPGL---ANRLLARFADRVALSFPE 144 (350)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHH-h---CCCEEEEcCCCCccH---HHHHHHHhhCEEEEcchh
Confidence 1123446689999999976543322222211 1 134555444332211 111122345666666555
Q ss_pred hHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH-HHHH
Q 012132 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FLHS 291 (470)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~-ll~a 291 (470)
..+. ++..++.+++||+|.+.+.+.+ . ++++++++++++++++|+....|+.+. ++++
T Consensus 145 ~~~~----------~~~~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a 203 (350)
T cd03785 145 TAKY----------FPKDKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEA 203 (350)
T ss_pred hhhc----------CCCCcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHH
Confidence 4332 3567899999999988765321 1 677888888888888887766777654 5577
Q ss_pred HHHHHHHHHhhcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccc
Q 012132 292 FYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
++.+.+ +++. ++++|+| ..+++++.++++ .++|++.|+.+++.++|+.||++|.+|-
T Consensus 204 ~~~l~~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg----- 261 (350)
T cd03785 204 LAELLR---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG----- 261 (350)
T ss_pred HHHhhc---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC-----
Confidence 776632 4555 4577776 346677777766 4689999999999999999999997652
Q ss_pred cchHHHHHHhcCCCEEecCCCC--------cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 371 FGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~g--------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
+++++|||++|+|||+++.++ ..+.+.+.++|+++++++.|+++++++|.++++|++.+++|++++++++.
T Consensus 262 -~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 262 -ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLAR 340 (350)
T ss_pred -HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 689999999999999987654 23556667899999987222999999999999999999999999998764
Q ss_pred HHcChhHHH
Q 012132 443 EIFQEHHMA 451 (470)
Q Consensus 443 ~~fs~~~~~ 451 (470)
.+..++++
T Consensus 341 -~~~~~~i~ 348 (350)
T cd03785 341 -PDAAERIA 348 (350)
T ss_pred -CCHHHHHH
Confidence 35555554
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=226.93 Aligned_cols=312 Identities=15% Similarity=0.121 Sum_probs=204.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 140 (470)
|||+|++... +|......+|+++|.++||+|++++....... ......|+.+....
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--------~~~~~~g~~~~~i~~~~~~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--------RLVPKAGIEFYFIPVGGLRRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--------cccccCCCceEEEeccCcCCCChHHHHH
Confidence 5888888544 45555667999999999999999985332110 11112333332211
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeee
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (470)
....+.+..+||+||+|..........+.+ ... .|++.+.++... ........+..+.+++.+
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~-~~~---~p~v~~~~~~~~---~~~~~~~~~~~d~ii~~~ 143 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAK-LLG---IPLFHHEQNAVP---GLTNKLLSRFAKKVLISF 143 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHH-HcC---CCEEEECCCCCc---cHHHHHHHHHhCeeEECc
Confidence 122345668999999997654333222111 111 244433332111 111122234566777766
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH-HH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~-ll 289 (470)
....+++ +..+|+||++...+.+.. .+++++++++.++++++|+....|++.. ++
T Consensus 144 ~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~ 199 (348)
T TIGR01133 144 PGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELVP 199 (348)
T ss_pred hhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHHH
Confidence 6553322 247999999877654321 1235678778889999998777888654 55
Q ss_pred HHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+|++.+.+ ++.++++ +|++ ..+.+++.++++++.+.+.|. .. ++.++|++||++|.+|-
T Consensus 200 ~a~~~l~~---------~~~~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~g--- 259 (348)
T TIGR01133 200 KALAKLAE---------KGIQIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRAG--- 259 (348)
T ss_pred HHHHHHhh---------cCcEEEEECCcc------hHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECCC---
Confidence 78876643 3455544 4444 346788888888876666666 33 89999999999997541
Q ss_pred cccchHHHHHHhcCCCEEecCCCC-------cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g-------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
|++++|||++|+|+|+++.++ ..+++.++++|++++++|.++++++++|.++++|++.+++|++++++++
T Consensus 260 ---~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 260 ---ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred ---hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC
Confidence 789999999999999998754 2356778889999988654599999999999999999999999998866
Q ss_pred HHHcChhHHH
Q 012132 442 KEIFQEHHMA 451 (470)
Q Consensus 442 ~~~fs~~~~~ 451 (470)
.+ ...++++
T Consensus 337 ~~-~~~~~i~ 345 (348)
T TIGR01133 337 KP-DAAKRIA 345 (348)
T ss_pred Cc-cHHHHHH
Confidence 43 4444443
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=204.13 Aligned_cols=169 Identities=29% Similarity=0.497 Sum_probs=153.1
Q ss_pred HHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC
Q 012132 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
++..+.+.+.+.++++|+++||+.+.||++.+++++..+.+.. .+++.++|+|.+ ++...++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~------~~~~~l~i~G~~-----~~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKK------NPNYKLVIVGDG-----EYKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHH------HTTEEEEEESHC-----CHHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhc------CCCeEEEEEccc-----cccccccccccccc
Confidence 5677888888899999999999999999999999999886531 289999999976 58888999999999
Q ss_pred CCCcEEEecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChH
Q 012132 337 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 414 (470)
Q Consensus 337 l~~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~ 414 (470)
+.++++|+|... ++..+|+.||++++||. .|+||++++|||++|+|||+++.|+..|++.++.+|+++++.| ++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~--~~ 146 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPND--IE 146 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTS--HH
T ss_pred ccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeeccccceEEeCCCC--HH
Confidence 999999999875 99999999999999999 8999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 415 PLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 415 ~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
+++++|.+++++++.++.|+++++++
T Consensus 147 ~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 147 ELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999875
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=221.24 Aligned_cols=274 Identities=12% Similarity=0.077 Sum_probs=188.3
Q ss_pred hHHhhcCCcEEEEcccchhhh---HHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHh
Q 012132 144 TINTALKADLIVLNTAVAGKW---LDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (470)
++.+..+||+||++.+..... +....+... ....|++..+++.. ........+..+.+++.+....+.+.
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~-~~~~p~~~~~tD~~----~~~~~w~~~~~d~~~~~s~~~~~~l~-- 166 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKEL-GKKIPFTTVVTDLG----TCHPTWFHKGVTRCFCPSEEVAKRAL-- 166 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHhhcc-CCCCCEEEEECCCC----CcCcccccCCCCEEEECCHHHHHHHH--
Confidence 455678999999977663221 111111101 12245665555542 11122234567777877766655444
Q ss_pred hhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHH
Q 012132 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300 (470)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~ 300 (470)
.+|++.+++.+++++++.+.+.+.. .+..+|+++|++++.++++++|+....|++..+++++..+.....
T Consensus 167 ---~~g~~~~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~ 236 (382)
T PLN02605 167 ---KRGLEPSQIRVYGLPIRPSFARAVR-------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKN 236 (382)
T ss_pred ---HcCCCHHHEEEECcccCHhhccCCC-------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhcccc
Confidence 4588889999999999876543321 145689999999899999999999899999999999876431000
Q ss_pred hhcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 301 EKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 301 ~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
. ..++.+ ++++|.+. +..+.+++. ....+|+|+|+++++.++|++||++|.++ .|++++|||
T Consensus 237 ~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EAm 299 (382)
T PLN02605 237 L---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEAL 299 (382)
T ss_pred c---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHHH
Confidence 0 125565 66777652 234555443 22357999999999999999999999654 378999999
Q ss_pred hcCCCEEecCC------CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 380 AFQLPVLGTAA------GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 380 a~G~PvI~s~~------~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
+||+|+|+++. |+...++ +++.|+.. +| +++++++|.++++| ++.+++|++++++.... .+.+.+++
T Consensus 300 a~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~-~a~~~i~~ 373 (382)
T PLN02605 300 IRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLARP-EAVFDIVH 373 (382)
T ss_pred HcCCCEEEecCCCccchhhHHHHH-hCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-chHHHHHH
Confidence 99999999983 3443344 45567654 56 99999999999998 99999999999987643 56666666
Q ss_pred HHHHH
Q 012132 453 RIAVV 457 (470)
Q Consensus 453 ~~~~~ 457 (470)
.+.+.
T Consensus 374 ~l~~~ 378 (382)
T PLN02605 374 DLHEL 378 (382)
T ss_pred HHHHH
Confidence 66544
|
|
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=229.79 Aligned_cols=295 Identities=17% Similarity=0.154 Sum_probs=210.2
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
.-|+|.+|+..... +...++...+. .++.+..|..++..- .....+.+-.++.+-..+...+..+.+...
T Consensus 147 ~~d~vWvhDYhL~l-lp~~lR~~~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~ 223 (797)
T PLN03063 147 EGDVVWCHDYHLMF-LPQYLKEYNNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACT 223 (797)
T ss_pred CCCEEEEecchhhh-HHHHHHHhCCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHH
Confidence 45799999865543 33444444544 477888887654431 122333334445555555555555544333
Q ss_pred hhhcc-----------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 223 ERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 223 ~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
+.++. ...++.++|||||.+.|.+.............+++.++ ++.+|+++||+.+.||++.+++|
T Consensus 224 r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~A 300 (797)
T PLN03063 224 RILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLA 300 (797)
T ss_pred HHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHH
Confidence 33332 22468899999999998765332111222335566554 56788999999999999999999
Q ss_pred HHHHHHHHHhhcccCCce----EEEEEeCCCCcChHHHHHHHHHHHhcC--CCCc--------EEEec-c--cCCHHHHH
Q 012132 292 FYESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESELRNYVMQKK--IQDR--------VHFVN-K--TLTVAPYL 354 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~----~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~--------V~~~g-~--~~~~~~~~ 354 (470)
++++.+ ++|++ .|+.++.....+.+..+++++.++++. +..+ |++++ . .+++..+|
T Consensus 301 fe~lL~-------~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 301 FEKFLE-------ENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHH-------hCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 999876 34654 455444322223356677777777664 3221 34444 2 27899999
Q ss_pred HhcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHH
Q 012132 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVER 429 (470)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (470)
+.||+||+||. .||||++++||||||+| +|+|+.+|..+.+ +.+|++++|.| +++++++|.++++ +++.
T Consensus 374 ~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 447 (797)
T PLN03063 374 AITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWN--ITEVSSAIKEALNMSDEE 447 (797)
T ss_pred HhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCC--HHHHHHHHHHHHhCCHHH
Confidence 99999999999 99999999999999999 9999999998876 55799999999 9999999999999 7788
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
++++.+..++++.+ ++|..+++.+++.++++...
T Consensus 448 r~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 448 RETRHRHNFQYVKT-HSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHhhh
Confidence 88888889998865 99999999999999887643
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=214.33 Aligned_cols=340 Identities=11% Similarity=0.095 Sum_probs=216.4
Q ss_pred cccEEEEEeeccCCCch-hHHHHHHHHHHHhCCc---eEEEEe---cCCCCCchhHHHhhhhh----------hhhccee
Q 012132 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGT---KVNWIT---IQKPSEEDEVIYSLEHK----------MWDRGVQ 135 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~---~V~v~~---~~~~~~~~~~~~~~~~~----------~~~~~~~ 135 (470)
.+||||+++..+ ||| -+.+..|.++|.++|. +|.++- ...+.........+... +....-.
T Consensus 4 ~~~~vlil~~~~--G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~ 81 (391)
T PRK13608 4 QNKKILIITGSF--GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPD 81 (391)
T ss_pred CCceEEEEECCC--CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCch
Confidence 357999999554 555 6889999999988764 455443 11111111010000000 0000000
Q ss_pred e--------EecCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhccccccccee
Q 012132 136 V--------ISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (470)
Q Consensus 136 ~--------~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (470)
. ........+.++.+||+||++.+... +..+..... ...|++...++.. ... ....+..+.++
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~--~~~l~~~~~--~~iP~~~v~td~~---~~~--~w~~~~~d~~~ 152 (391)
T PRK13608 82 KLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPV--MSVLTEQFN--INIPVATVMTDYR---LHK--NWITPYSTRYY 152 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHH--HHHHHHhcC--CCCCEEEEeCCCC---ccc--ccccCCCCEEE
Confidence 0 01123345566789999999866542 222221111 1235543333321 111 12235567777
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEeecccCCCHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQD 286 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGrl~~~Kg~~ 286 (470)
+.+....+.+. ..|++.+++.+++|+++..+..... +...++++|+++++ .++++.|++...||++
T Consensus 153 v~s~~~~~~l~-----~~gi~~~ki~v~GiPv~~~f~~~~~--------~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~ 219 (391)
T PRK13608 153 VATKETKQDFI-----DVGIDPSTVKVTGIPIDNKFETPID--------QKQWLIDNNLDPDKQTILMSAGAFGVSKGFD 219 (391)
T ss_pred ECCHHHHHHHH-----HcCCCHHHEEEECeecChHhccccc--------HHHHHHHcCCCCCCCEEEEECCCcccchhHH
Confidence 77776655554 3478888999988888754322111 34567789997665 4556789999889999
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (470)
.+++++.+ ..+++++++++++.. +..+++++ .++..++|+++|+++++.++|+.||++|.
T Consensus 220 ~li~~~~~----------~~~~~~~vvv~G~~~---~l~~~l~~---~~~~~~~v~~~G~~~~~~~~~~~aDl~I~---- 279 (391)
T PRK13608 220 TMITDILA----------KSANAQVVMICGKSK---ELKRSLTA---KFKSNENVLILGYTKHMNEWMASSQLMIT---- 279 (391)
T ss_pred HHHHHHHh----------cCCCceEEEEcCCCH---HHHHHHHH---HhccCCCeEEEeccchHHHHHHhhhEEEe----
Confidence 99998532 226788876654310 12334443 33445689999999999999999999994
Q ss_pred cccccchHHHHHHhcCCCEEecCC-CCc----ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAA-GGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~-~g~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
.+.|+++.|||++|+|+|+++. +|. ...+.+.+.|+. .+| .++++++|.++++|++.+++|++++++..
T Consensus 280 --k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~--~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 280 --KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI--ADT--PEEAIKIVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred --CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE--eCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3458899999999999999963 331 112233444544 445 89999999999999999999999999976
Q ss_pred HHHcChhHHHHHHHHHHHHHHH
Q 012132 442 KEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
.. |+++.+++.+++++.++.+
T Consensus 354 ~~-~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 354 IK-YATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CC-CCHHHHHHHHHHHhhhhhh
Confidence 54 9999999999999887654
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=220.68 Aligned_cols=294 Identities=16% Similarity=0.149 Sum_probs=199.2
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+...... ...++...+. .++.+..|-.++... .....+.+-..+-+-..+......+.+..
T Consensus 132 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 132 RPGDVVWVHDYQLMLL-PAMLRERLPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCCCEEEEeCchhhhH-HHHHHhhCCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998665443 3334444443 467778886654331 11222223333444344444344433333
Q ss_pred hhhhcc-----------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
.+.++. ...++.++|||||.+.|.+...........+.+|+.+ .++.+|+++||+.+.||++.+++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~ 285 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLL 285 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHH
Confidence 333321 2235899999999999987643222222234466654 46778999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCc----eEEEEEeCCCCcChH----HHHHHHHHHHhcC-------CCCcEEEecc--cCCHHHH
Q 012132 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTK----FESELRNYVMQKK-------IQDRVHFVNK--TLTVAPY 353 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~----~~l~ivG~g~~~~~~----~~~~l~~~~~~~~-------l~~~V~~~g~--~~~~~~~ 353 (470)
|++++.+ ++|+ ++|+++|.+.....+ +..++.+++.+.+ ....+.+.|. .+++..+
T Consensus 286 A~~~ll~-------~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~l 358 (726)
T PRK14501 286 AFERFLE-------KNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHH-------hCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHH
Confidence 9999876 3454 789988754222212 3344444443322 1122445565 3899999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcC-----CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-H
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ-----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-V 427 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G-----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~ 427 (470)
|+.||++++||. .||||++++|||||| +||++...|+..+++ .|++++|.| +++++++|.+++++ .
T Consensus 359 y~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d--~~~la~ai~~~l~~~~ 430 (726)
T PRK14501 359 YRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPND--IEGIAAAIKRALEMPE 430 (726)
T ss_pred HHhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCC--HHHHHHHHHHHHcCCH
Confidence 999999999999 999999999999994 567777778888875 389999999 99999999999985 3
Q ss_pred HHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 428 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 428 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+.+....+++++++. .|||+.+++++++.|+++..+
T Consensus 431 ~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 431 EEQRERMQAMQERLR-RYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhh
Confidence 455566678888884 599999999999999998654
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=188.04 Aligned_cols=224 Identities=27% Similarity=0.302 Sum_probs=161.0
Q ss_pred EEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 77 VLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 77 Il~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
|+++++...+ ||.+++...+++.|.++||+|++++ ..........+..+||+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~-------------------------~~~~~~~~~~~~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA-------------------------LLLLLLLRILRGFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE-------------------------echHHHHHHHhhcCCCEE
Confidence 4666766654 6668999999999999999999998 000112223335799999
Q ss_pred EEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEE
Q 012132 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (470)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (470)
|+++............. ....+++++.|+...........
T Consensus 56 ~~~~~~~~~~~~~~~~~---~~~~~~i~~~h~~~~~~~~~~~~------------------------------------- 95 (229)
T cd01635 56 HAHGYYPAPLALLLAAR---LLGIPLVLTVHGVNRSLLEGVPL------------------------------------- 95 (229)
T ss_pred EEcCCCcHHHHHHHHHh---hCCCCEEEEEcCccHhhcccCcH-------------------------------------
Confidence 99987665544311111 12357888999764432211000
Q ss_pred EecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEE
Q 012132 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314 (470)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv 314 (470)
...... . ......++|++.+.||++.+++++..+.+ +.++++++++
T Consensus 96 -------~~~~~~------------~--------~~~~~~~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~ 141 (229)
T cd01635 96 -------SLLALS------------I--------GLADKVFVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIA 141 (229)
T ss_pred -------HHHHHH------------H--------hhcceEEEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEE
Confidence 000000 0 00011189999999999999999998865 3479999999
Q ss_pred eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCC
Q 012132 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 391 (470)
Q Consensus 315 G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~ 391 (470)
|.+. .....+..+..++..++|.+.|+. +++..+++.||++++||. .|++|++++|||++|+|+|+|+.+
T Consensus 142 G~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 142 GDGP-----EREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred eCCC-----ChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCC
Confidence 9983 344455546677888899999983 556666677999999999 899999999999999999999999
Q ss_pred CcceeeecCceeeee
Q 012132 392 GTTEIVVNGTTGLLH 406 (470)
Q Consensus 392 g~~e~v~~~~~G~l~ 406 (470)
+..|++.++++|+++
T Consensus 215 ~~~e~i~~~~~g~~~ 229 (229)
T cd01635 215 GPPEIVEDGLTGLLV 229 (229)
T ss_pred CcceEEECCCceEEC
Confidence 999999999999874
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=199.51 Aligned_cols=261 Identities=13% Similarity=0.037 Sum_probs=171.3
Q ss_pred hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
..+..+++.+.+....+... . ...++++++++....... ......+..++.+++.|....+.+.+
T Consensus 100 ~~~~~i~~~~~P~~~~~~~~-----~--~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~-- 170 (373)
T cd04950 100 GFGRPILWYYTPYTLPVAAL-----L--QASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFTTSPSLYEAKRR-- 170 (373)
T ss_pred CCCCcEEEEeCccHHHHHhh-----c--CCCeEEEEcccchhccCCCCHHHHHHHHHHHHhCCEEEECCHHHHHHHhh--
Confidence 34555666766655443333 1 124678888875543321 12344456777888888777655442
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~ 301 (470)
++ .++.+|+||+|.+.|.+...... ..+.. ...++++++|+|++.+.++++.+.++++
T Consensus 171 ---~~---~~i~~i~ngvd~~~f~~~~~~~~------~~~~~--~~~~~~~i~y~G~l~~~~d~~ll~~la~-------- 228 (373)
T cd04950 171 ---LN---PNVVLVPNGVDYEHFAAARDPPP------PPADL--AALPRPVIGYYGAIAEWLDLELLEALAK-------- 228 (373)
T ss_pred ---CC---CCEEEcccccCHHHhhcccccCC------ChhHH--hcCCCCEEEEEeccccccCHHHHHHHHH--------
Confidence 23 67999999999999876432100 00111 1246689999999999888876655443
Q ss_pred hcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC---cccccchHHH
Q 012132 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---WGECFGRITI 376 (470)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~---~~E~~g~~~l 376 (470)
..|+++|+++|++... ..... +...+||+|+|++ +++..+|+.+|++++|+.. ..+++|++++
T Consensus 229 ---~~p~~~~vliG~~~~~-----~~~~~----~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~ 296 (373)
T cd04950 229 ---ARPDWSFVLIGPVDVS-----IDPSA----LLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLF 296 (373)
T ss_pred ---HCCCCEEEEECCCcCc-----cChhH----hccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHH
Confidence 2389999999997211 11111 1113689999986 8899999999999999862 1246899999
Q ss_pred HHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 377 EAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
||||||+|||+|+.++..+ ... |.++.++| +++++++|.+++.++..... +.+++ +.+.|||++.++++.+
T Consensus 297 EylA~G~PVVat~~~~~~~---~~~-~~~~~~~d--~~~~~~ai~~~l~~~~~~~~--~~~~~-~~~~~sW~~~a~~~~~ 367 (373)
T cd04950 297 EYLAAGKPVVATPLPEVRR---YED-EVVLIADD--PEEFVAAIEKALLEDGPARE--RRRLR-LAAQNSWDARAAEMLE 367 (373)
T ss_pred HHhccCCCEEecCcHHHHh---hcC-cEEEeCCC--HHHHHHHHHHHHhcCCchHH--HHHHH-HHHHCCHHHHHHHHHH
Confidence 9999999999998765544 333 34444556 99999999997654321111 12222 4566999999999986
Q ss_pred HHHH
Q 012132 457 VLKE 460 (470)
Q Consensus 457 ~~~~ 460 (470)
.+.+
T Consensus 368 ~l~~ 371 (373)
T cd04950 368 ALQE 371 (373)
T ss_pred HHHh
Confidence 5544
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=185.47 Aligned_cols=290 Identities=13% Similarity=0.092 Sum_probs=203.3
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+..... +...++...+. .++.+..|..++..- .....+.+-.++-+-..+...+..+.+..
T Consensus 131 ~~~d~vWVhDYhL~l-lp~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~ 207 (487)
T TIGR02398 131 AEGATVWVHDYNLWL-VPGYIRQLRPD--LKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAA 207 (487)
T ss_pred CCCCEEEEecchhhH-HHHHHHHhCCC--CeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 345899999865544 33444444443 467777886554331 11222223333334334444443333333
Q ss_pred hhhhcc--------------------------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCC
Q 012132 222 RERLRI--------------------------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 269 (470)
Q Consensus 222 ~~~~~~--------------------------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 269 (470)
.+.++. ..-++.++|.|||.+.|.............+++|++++ +
T Consensus 208 ~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~ 284 (487)
T TIGR02398 208 RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELA---G 284 (487)
T ss_pred HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---C
Confidence 222221 11237899999999999765433222334567888887 6
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC----ceEEEEEeCCCCcCh----HHHHHHHHHHHhc------
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP----SVHAVIIGSDMNAQT----KFESELRNYVMQK------ 335 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~----~~~l~ivG~g~~~~~----~~~~~l~~~~~~~------ 335 (470)
+.+|+.++|+++.||++..++||+++++ ++| ++.|+++|.+..... ++..++++++.+.
T Consensus 285 ~kiIl~VDRLDy~KGI~~kl~Afe~~L~-------~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~ 357 (487)
T TIGR02398 285 VKLILSAERVDYTKGILEKLNAYERLLE-------RRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFAR 357 (487)
T ss_pred ceEEEEecccccccCHHHHHHHHHHHHH-------hCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCC
Confidence 7889999999999999999999999877 446 479999987643222 2455566666554
Q ss_pred -CCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC----CEEecCCCCcceeeecCceeeeecC
Q 012132 336 -KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPV 408 (470)
Q Consensus 336 -~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~s~~~g~~e~v~~~~~G~l~~~ 408 (470)
+..+-+.+.+.. +++..+|+.||+++.||. .||++++..|+|+|+. |+|.|..+|..+.+ ..+++++|
T Consensus 358 ~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l---~~AllVNP 432 (487)
T TIGR02398 358 IGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL---KGALLTNP 432 (487)
T ss_pred CCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCCCCCEEEeccccchhhc---CCCEEECC
Confidence 444556677764 889999999999999999 9999999999999999 99999999988776 35799999
Q ss_pred CCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 409 GKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 409 ~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
.| +++++++|.+.++. .+.+++..+..++++.+ ++...+++.+++-+.
T Consensus 433 ~d--~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 433 YD--PVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQRWADEFLAAVS 481 (487)
T ss_pred CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 99 99999999999996 44566666667777755 899988888775443
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=166.69 Aligned_cols=356 Identities=17% Similarity=0.165 Sum_probs=236.0
Q ss_pred ccEEEEEeeccCCCc-hhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhh----hhhhcceeeEecCCh----
Q 012132 74 SKLVLLVSHELSLSG-GPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEH----KMWDRGVQVISAKGQ---- 142 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G-~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---- 142 (470)
.+.+.|++++...|| ||+++..-.+.+++.- +...|++.+-............+ .+....+.++..+..
T Consensus 43 ~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVe 122 (465)
T KOG1387|consen 43 VKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVE 122 (465)
T ss_pred ceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeee
Confidence 467999999888754 5899999999998863 34444444423222222211111 122233444332211
Q ss_pred --------------------hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec--ccc---------
Q 012132 143 --------------------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--GHY--------- 191 (470)
Q Consensus 143 --------------------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~~~--------- 191 (470)
-...-+..|||.+-....+..+.. ++. + ...|++.++|-.. ...
T Consensus 123 a~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~--~r~-l--~~~~V~aYvHYP~iS~DML~~l~qrq~ 197 (465)
T KOG1387|consen 123 ASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPI--FRR-L--RRIPVVAYVHYPTISTDMLKKLFQRQK 197 (465)
T ss_pred cccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHH--HHH-H--ccCceEEEEecccccHHHHHHHHhhhh
Confidence 011234789998876654433222 221 1 1146777777311 000
Q ss_pred ------chhhhhccc--------ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHH
Q 012132 192 ------FKLDYVKHL--------PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLR 257 (470)
Q Consensus 192 ------~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~ 257 (470)
-+..+.+.+ ..++.++++|..+.+...+-. + ..++.+|+++++.+.....
T Consensus 198 s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW----~--~~~~~iVyPPC~~e~lks~---------- 261 (465)
T KOG1387|consen 198 SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIW----Q--SNTCSIVYPPCSTEDLKSK---------- 261 (465)
T ss_pred cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHh----h--ccceeEEcCCCCHHHHHHH----------
Confidence 011111111 234556667776665554422 2 2568899999988854322
Q ss_pred HHHHHHcCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-ChHHHHHHHHHHHhc
Q 012132 258 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQK 335 (470)
Q Consensus 258 ~~~r~~~~~-~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~-~~~~~~~l~~~~~~~ 335 (470)
.+- ..+...++++|.+.|+|++. +++.++-.....+.. ...++++|+++|+-.++ +.+..+.|+++++++
T Consensus 262 ------~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~-a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L 333 (465)
T KOG1387|consen 262 ------FGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLE-ASVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL 333 (465)
T ss_pred ------hcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchh-hccCCceEEEEeccCChhhHHHHHHHHHHHHhc
Confidence 122 24568899999999999999 444443322211110 13467999999986433 335678899999999
Q ss_pred CCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc-ceeeec---CceeeeecCC
Q 012132 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT-TEIVVN---GTTGLLHPVG 409 (470)
Q Consensus 336 ~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~-~e~v~~---~~~G~l~~~~ 409 (470)
.++++|.|.-.. +++..+|+.|.+.|...- .|.||+.+.|+||+|+-+|+-+.||. -++|.+ ..+|++++.
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t- 410 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPT- 410 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCC-
Confidence 999999998765 899999999999999996 99999999999999999999998874 555553 356899853
Q ss_pred CCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 410 KEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 410 d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
.++.+++|.+++. |++.+..|.++||..+ .+|+..+..+.+...+.+++.+.
T Consensus 411 ---~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~-~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 411 ---DEEYAEAILKIVKLNYDERNMMRRNARKSL-ARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred ---hHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHHhHhHHHHHhhccc
Confidence 6899999999998 6777899999999877 45999999999999999988754
|
|
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=188.10 Aligned_cols=338 Identities=15% Similarity=0.126 Sum_probs=204.6
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE--------------ec
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--------------SA 139 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 139 (470)
+|||+++.... ||..+.-.++++|++.++++.++......-.... +...+....+.+. ..
T Consensus 1 ~~ki~i~~Ggt---~G~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 74 (380)
T PRK00025 1 PLRIAIVAGEV---SGDLLGAGLIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIR 74 (380)
T ss_pred CceEEEEecCc---CHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHH
Confidence 36898887543 4444444599999998899888874332100000 0000000001110 11
Q ss_pred CChhhHHhhcCCcEEEEcccchh-hhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHH
Q 012132 140 KGQETINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (470)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (470)
...+.+.+..+||+||++..... ..+....+.. ..|++++.+.....+......+..+..+.+++.+....+.+.
T Consensus 75 ~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~----~ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~ 150 (380)
T PRK00025 75 RRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKA----GIPTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFYD 150 (380)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHC----CCCEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHHH
Confidence 12345566789999999863211 1112112111 135555444321111222222334556777777776655544
Q ss_pred HhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE-EEEe-ecccC-CCHHHHHHHHHHH
Q 012132 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIIN-SVSRG-KGQDLFLHSFYES 295 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~vG-rl~~~-Kg~~~ll~a~~~l 295 (470)
.+|.+ +.++.|++...... .. .+...+++++++++.+++ ++.| |.... ++++.++++++.+
T Consensus 151 -----~~g~~---~~~~G~p~~~~~~~-~~-------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l 214 (380)
T PRK00025 151 -----KLGVP---VTFVGHPLADAIPL-LP-------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLL 214 (380)
T ss_pred -----hcCCC---eEEECcCHHHhccc-cc-------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 23432 55555554332111 01 134578889998776654 4444 33333 4578889999877
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~ 374 (470)
.+ +.|+++++++|++. +..+++++.++++ ++. +.+.. .++..+|+.||++|.+| |.+
T Consensus 215 ~~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~ 272 (380)
T PRK00025 215 QQ-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTV 272 (380)
T ss_pred HH-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHH
Confidence 54 34789999998632 4677788888776 553 55543 58999999999999987 678
Q ss_pred HHHHHhcCCCEEec-----------------CCCCcceeeecCc--eeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 375 TIEAMAFQLPVLGT-----------------AAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 375 ~lEAma~G~PvI~s-----------------~~~g~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
.+|||++|+|+|++ +.+++++++.++. .+++.+..| ++++++++.++++|++.+++|++
T Consensus 273 ~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~ 350 (380)
T PRK00025 273 TLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKLARALLPLLADGARRQALLE 350 (380)
T ss_pred HHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHHHHHHHHHhcCHHHHHHHHH
Confidence 88999999999987 4556677776654 345666666 99999999999999999999999
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 436 RGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 436 ~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
++.+.... . ....++++.+.+.+++.
T Consensus 351 ~~~~~~~~-~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 351 GFTELHQQ-L-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHH-h-CCCHHHHHHHHHHHHhh
Confidence 88665544 2 33355666666665554
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=181.15 Aligned_cols=316 Identities=16% Similarity=0.118 Sum_probs=189.7
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhccee----eE-ec---------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ----VI-SA--------- 139 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--------- 139 (470)
|||++++..-+-- ..+..+.++|.+. +.++.++...... .. ........++. +. ..
T Consensus 1 ~~i~~~~gtr~~~---~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 71 (365)
T TIGR00236 1 LKVSIVLGTRPEA---IKMAPLIRALKKYPEIDSYVIVTAQHR---EM---LDQVLDLFHLPPDYDLNIMSPGQTLGEIT 71 (365)
T ss_pred CeEEEEEecCHHH---HHHHHHHHHHhhCCCCCEEEEEeCCCH---HH---HHHHHHhcCCCCCeeeecCCCCCCHHHHH
Confidence 5898888533211 4678888999876 5666555532221 11 11112122221 11 00
Q ss_pred ----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc--cc--chhhh-hcccc-cccceeee
Q 012132 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG--HY--FKLDY-VKHLP-LVAGAMID 209 (470)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~--~~--~~~~~-~~~~~-~~~~~~~~ 209 (470)
.....+.+..+||+||+|......+......... ..|++...++... .+ +.... +..+. ..+.+++.
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~---~ipv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~ 148 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYL---QIPVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAP 148 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHh---CCCEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCC
Confidence 1123455678999999997543322222222111 1344433222211 10 11111 11122 23556666
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec-ccCCCHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLF 288 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl-~~~Kg~~~l 288 (470)
+....+.+. +.|++++++.+++||+....+...... .+..++++++. ++.+++++.+|. ...||++.+
T Consensus 149 s~~~~~~l~-----~~G~~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~l 217 (365)
T TIGR00236 149 TEQAKDNLL-----RENVKADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGE-DKRYILLTLHRRENVGEPLENI 217 (365)
T ss_pred CHHHHHHHH-----HcCCCcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCC-CCCEEEEecCchhhhhhHHHHH
Confidence 666654443 358888999999999743332221110 12445666763 334555545454 346899999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~ 366 (470)
++|+.++.+ ++|+++++++|.+.+ ..... +.+.++..++|+|+|.. .++..+++.+|+++.+|
T Consensus 218 l~a~~~l~~-------~~~~~~~vi~~~~~~---~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-- 282 (365)
T TIGR00236 218 FKAIREIVE-------EFEDVQIVYPVHLNP---VVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-- 282 (365)
T ss_pred HHHHHHHHH-------HCCCCEEEEECCCCh---HHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC--
Confidence 999998754 347889888865421 12222 33445666789999975 56788899999998776
Q ss_pred cccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
|..++|||++|+|||++ +.|+.+|++.++ .+.+++ .| ++++++++.++++|++.+++++++.
T Consensus 283 -----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 283 -----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred -----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhcC
Confidence 44589999999999996 678888888755 555664 55 9999999999999999888887665
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=171.44 Aligned_cols=203 Identities=30% Similarity=0.456 Sum_probs=170.6
Q ss_pred ceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC--eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED--LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
++.+++|+++.+.+... ..++..+. ..++++||+.+.||++.+++++..+.+ ..++
T Consensus 173 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~-------~~~~ 230 (381)
T COG0438 173 KIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKK-------RGPD 230 (381)
T ss_pred CceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhh-------hcCC
Confidence 68999999999987542 11222333 789999999999999999999998865 2244
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
..++++|.+... ...+...+++++..++|.|+|... ++..+++.+|++++||. .|+||++++|||++|+|||
T Consensus 231 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 231 IKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred eEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEE
Confidence 899999998421 356666888888778999999864 78888999999999999 7999999999999999999
Q ss_pred ecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 387 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+++.++..|++.++.+|+++...| .+++++++..++++.+.++.+++.+++.+.+.|+|+.+++++.+++.....
T Consensus 305 ~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 305 ASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred ECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999999998877788777766 999999999999998888888887777776889999999999999988764
|
|
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=178.02 Aligned_cols=330 Identities=17% Similarity=0.124 Sum_probs=198.7
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCC-CchhHHHhhhhhhhhcc--eeeEec------------
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPS-EEDEVIYSLEHKMWDRG--VQVISA------------ 139 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~------------ 139 (470)
||++++..-+-. ..+.-+.++|++. |+++.++...... ....... .+.....+ +.....
T Consensus 1 ~i~~~~gtr~~~---~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (363)
T cd03786 1 KILVVTGTRPEY---IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTF--FEILFIIKPDYDLLLGSDSQSLGAQTAG 75 (363)
T ss_pred CEEEEEecCHHH---HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHH--HHhhCCCCCCEEEecCCCCCCHHHHHHH
Confidence 577777432211 3577788899887 8999976643221 1111111 11101111 111100
Q ss_pred --CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc---ccchhhhhc-ccccccceeeeehhh
Q 012132 140 --KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG---HYFKLDYVK-HLPLVAGAMIDSHVT 213 (470)
Q Consensus 140 --~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~---~~~~~~~~~-~~~~~~~~~~~s~~~ 213 (470)
..........+||+||+|......+......... ..|++...|+... ......... .....+.+++.+...
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~---~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~ 152 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKL---GIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEA 152 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHc---CCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHH
Confidence 0112334557999999996443322222222111 1355554443221 010111111 123445566666665
Q ss_pred HHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeeccc---CCCHHHHH
Q 012132 214 AEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLFL 289 (470)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~---~Kg~~~ll 289 (470)
.+.+. +.|++.+++.+++|++ |...+...... ....++.++++++++++++.||... .||++.++
T Consensus 153 ~~~l~-----~~G~~~~kI~vign~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~ 221 (363)
T cd03786 153 RRNLL-----QEGEPPERIFVVGNTMIDALLRLLELAK------KELILELLGLLPKKYILVTLHRVENVDDGEQLEEIL 221 (363)
T ss_pred HHHHH-----HcCCCcccEEEECchHHHHHHHHHHhhc------cchhhhhcccCCCCEEEEEeCCccccCChHHHHHHH
Confidence 55443 5688999999999996 43332221110 1223467788777788888999864 79999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEEccCC
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNK--TLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~--~~~~~~~~~~aDv~v~pS~~ 366 (470)
+|++++.+ .++.+++.|++ +..+.+++.+.++++ .++|+|+|. .+++..+|+.||++|.+|-
T Consensus 222 ~al~~l~~---------~~~~vi~~~~~-----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg- 286 (363)
T cd03786 222 EALAELAE---------EDVPVVFPNHP-----RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG- 286 (363)
T ss_pred HHHHHHHh---------cCCEEEEECCC-----ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-
Confidence 99988743 35666666665 467888888888876 678999975 3789999999999999983
Q ss_pred cccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCC-CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 367 WGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
| +..|||++|+|+|+++. +..++.+.+ |..+..+ | +++++++|.++++++..+..|. ...
T Consensus 287 -----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~---g~~~~~~~~--~~~i~~~i~~ll~~~~~~~~~~-------~~~ 348 (363)
T cd03786 287 -----G-IQEEASFLGVPVLNLRDRTERPETVES---GTNVLVGTD--PEAILAAIEKLLSDEFAYSLMS-------INP 348 (363)
T ss_pred -----c-HHhhhhhcCCCEEeeCCCCccchhhhe---eeEEecCCC--HHHHHHHHHHHhcCchhhhcCC-------CCC
Confidence 3 47899999999999974 446666644 4444333 4 8999999999999987766653 122
Q ss_pred cChhHHHHHHHHH
Q 012132 445 FQEHHMAERIAVV 457 (470)
Q Consensus 445 fs~~~~~~~~~~~ 457 (470)
|.-.+.++++.++
T Consensus 349 ~~~~~a~~~I~~~ 361 (363)
T cd03786 349 YGDGNASERIVEI 361 (363)
T ss_pred CCCCHHHHHHHHH
Confidence 4444455555443
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=174.11 Aligned_cols=282 Identities=10% Similarity=0.067 Sum_probs=186.7
Q ss_pred CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC-cEEEEcccchhh-
Q 012132 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA-DLIVLNTAVAGK- 163 (470)
Q Consensus 86 ~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-DiV~~~~~~~~~- 163 (470)
..|+...-.++.+.+.+.|+++.-+...+..... ....... ...+....++ |+||+++|....
T Consensus 14 ~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~Dvv~~~~P~~~~~ 78 (333)
T PRK09814 14 NSAALKAKNDVTKIAKQLGFEELGIYFYNIKRDS--LSERSKR-------------LDGILASLKPGDIVIFQFPTWNGF 78 (333)
T ss_pred cchHHHHHHHHHHHHHHCCCeEeEEEecccccch--HHHHHHH-------------HHHHHhcCCCCCEEEEECCCCchH
Confidence 4667888899999999999988666532211100 0000000 1123334556 999999876432
Q ss_pred hH-HHHhhhcCCccccceeeEEeeeccccch------hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEe
Q 012132 164 WL-DAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236 (470)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ 236 (470)
.. ..++. .+.+...+++.++|+....... ......++.++.+++.|..+.+.+. ..|++..++.+++
T Consensus 79 ~~~~~~~~-~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~-----~~g~~~~~i~~~~ 152 (333)
T PRK09814 79 EFDRLFVD-KLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKDRLV-----EEGLTTDKIIVQG 152 (333)
T ss_pred HHHHHHHH-HHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcCceEecc
Confidence 11 22221 1122246899999997754322 2234456778889999998877765 3466667787777
Q ss_pred cCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC
Q 012132 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (470)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~ 316 (470)
+..+.....+ +. .+.....++|+|++...+++ +. ..++++|+|+|+
T Consensus 153 ~~~~~~~~~~--------------~~---~~~~~~~i~yaG~l~k~~~l----~~-------------~~~~~~l~i~G~ 198 (333)
T PRK09814 153 IFDYLNDIEL--------------VK---TPSFQKKINFAGNLEKSPFL----KN-------------WSQGIKLTVFGP 198 (333)
T ss_pred cccccccccc--------------cc---cccCCceEEEecChhhchHH----Hh-------------cCCCCeEEEECC
Confidence 6554321110 00 11345689999999843221 11 126799999999
Q ss_pred CCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC---------cccccchHHHHHHhcCCCE
Q 012132 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---------WGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 317 g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~---------~~E~~g~~~lEAma~G~Pv 385 (470)
|. ... ...++|+|+|+. +++..+|+. |+.+.+... ..-++|.++.|+||||+||
T Consensus 199 g~-----~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PV 263 (333)
T PRK09814 199 NP-----EDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPV 263 (333)
T ss_pred Cc-----ccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCE
Confidence 84 221 234689999985 788889988 766654320 0135788999999999999
Q ss_pred EecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 386 I~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
|+++.++..++|.++.+|++++ + .++++++|..+ +++.+.+|++++++.+..
T Consensus 264 I~~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~--~~~~~~~m~~n~~~~~~~ 315 (333)
T PRK09814 264 IVWSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI--TEEEYQEMVENVKKISKL 315 (333)
T ss_pred EECCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 4 78999999986 456788999999987754
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=178.68 Aligned_cols=293 Identities=15% Similarity=0.152 Sum_probs=199.1
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
.-|+|.+|+....+ +..+++...+. .++.+..|..++..- .....+.+-.++-+-..+......+.....
T Consensus 231 ~gD~VWVHDYHL~L-lP~~LR~~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~ 307 (934)
T PLN03064 231 EGDVVWCHDYHLMF-LPKCLKEYNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACT 307 (934)
T ss_pred CCCEEEEecchhhH-HHHHHHHhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 45799999865443 34445544544 467778886554331 112223333344444444444444444333
Q ss_pred hhhccC-----------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 223 ~~~~~~-----------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
+.++.. .-++.++|-|||.+.|.............+++|++++ ++.+|+.++|+.+.||+...+.|
T Consensus 308 rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 308 RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred HHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHH
Confidence 333321 1236788999999999865433333334567888875 56789999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceE--EEEE--eCCCCcChHHHHHHH----HHHHhc----CCCC--cEEEecc---cCCHHHHH
Q 012132 292 FYESLELIKEKKLEVPSVH--AVII--GSDMNAQTKFESELR----NYVMQK----KIQD--RVHFVNK---TLTVAPYL 354 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~--l~iv--G~g~~~~~~~~~~l~----~~~~~~----~l~~--~V~~~g~---~~~~~~~~ 354 (470)
|+++++ ++|+++ ++++ ......+.+..++++ +++.+. |-.+ -|+++.. .+++..+|
T Consensus 385 fE~fL~-------~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY 457 (934)
T PLN03064 385 FEKFLE-------ENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALY 457 (934)
T ss_pred HHHHHH-------hCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHH
Confidence 999876 446543 3443 322211113334443 433332 2111 1555443 28899999
Q ss_pred HhcCEEEEccCCcccccchHHHHHHhcCC----CEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHH
Q 012132 355 AAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVER 429 (470)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~ 429 (470)
+.||++++||. .||++++..|||+|+. ++|.|..+|..+.+ +..+++++|.| +++++++|.+.+. +++.
T Consensus 458 ~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D--~~~vA~AI~~AL~M~~~E 531 (934)
T PLN03064 458 AVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWN--ITEVAASIAQALNMPEEE 531 (934)
T ss_pred HhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCC--HHHHHHHHHHHHhCCHHH
Confidence 99999999999 9999999999999954 55559988888877 45689999999 9999999999998 7888
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++.+.+..++++.. +++..+++.+++-+.+..
T Consensus 532 r~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 532 REKRHRHNFMHVTT-HTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHH
Confidence 99999999999865 999999999888777664
|
|
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=164.92 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=147.7
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh---HHHHHHHHHHHhcCCCCcEE
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---KFESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~---~~~~~l~~~~~~~~l~~~V~ 342 (470)
++++.+.+++++|+..+||++++++++.++.+.+.+. ..++++++.|.+.+.+. .+.+.+.+++++...+++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~---~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNP---ERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 4467789999999999999999999999887644321 13689999999865421 25667777777644667888
Q ss_pred Eec-ccCCHHH-HHHhcCEEEE-ccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecC-----------
Q 012132 343 FVN-KTLTVAP-YLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV----------- 408 (470)
Q Consensus 343 ~~g-~~~~~~~-~~~~aDv~v~-pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~----------- 408 (470)
|+- +...++. ++++||++++ ||+. .|++|++-+-||..|.+.+++--|...|.. ++.||+.+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d 539 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQD 539 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcccccccccc
Confidence 764 5555554 5899999999 9984 899999999999999999999888888876 6789999984
Q ss_pred -CCCChHHHHHHHHHHH-----hC-----HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 409 -GKEGITPLAKNIVKLA-----TH-----VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 409 -~d~~~~~la~~i~~ll-----~~-----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.| .++|.++|++.+ ++ |..+.++.+++.+.....|||++++++|.+.|
T Consensus 540 ~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 540 RLD--AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred CCC--HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 44 899999997655 23 45688888888876656799999999999987
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-17 Score=156.54 Aligned_cols=328 Identities=16% Similarity=0.110 Sum_probs=190.0
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHH---Hhhhhhhhhcce-eeE--------ecCCh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI---YSLEHKMWDRGV-QVI--------SAKGQ 142 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~--------~~~~~ 142 (470)
.||++.+... ||..+--.++++|+++|+++.++...++.-..... +.+ ..+.-.|+ ..+ .....
T Consensus 6 ~ki~i~aGgt---sGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~-~~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 6 PTIALVAGEA---SGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSM-EELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CeEEEEeCCc---cHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccCh-HHhhhccHHHHHHHHHHHHHHHHHH
Confidence 3666665332 44455559999999999999998854321000000 000 00000111 000 01122
Q ss_pred hhHHhhcCCcEEEEcccchhhhHH-HHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 143 ETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
..+.++.+||+|++++.....+.. ...+. ...|+++++.-....|-...-+...+..+.+++.+....+.+.+
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~----~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~~~~-- 155 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKD----PGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAFYQK-- 155 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhh----CCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHHHHh--
Confidence 355567899999999853323222 12211 12455543321111111222222234556667766666555442
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEE-e-eccc-CCCHHHHHHHHHHHHHH
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII-N-SVSR-GKGQDLFLHSFYESLEL 298 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~v-G-rl~~-~Kg~~~ll~a~~~l~~~ 298 (470)
.+ .+..++.|++........+ .+...|+++|++++.++|+++ | |..+ .|+++.++++++.+.+
T Consensus 156 ---~g---~~~~~vGnPv~~~~~~~~~-------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~- 221 (385)
T TIGR00215 156 ---KN---VPCRFVGHPLLDAIPLYKP-------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ- 221 (385)
T ss_pred ---cC---CCEEEECCchhhhccccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH-
Confidence 22 2466788887443221101 134568889998887766655 3 6655 6899999999988754
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+.|++++++.+.+. ...+.+++..+.++...+|.+.+. ++..+|++||++|.+| |.+.+|+
T Consensus 222 ------~~p~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlEa 282 (385)
T TIGR00215 222 ------QEPDLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-------GTAALEA 282 (385)
T ss_pred ------hCCCeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-------CHHHHHH
Confidence 44888887765432 345666777777766666776653 6778999999999998 5677799
Q ss_pred HhcCCCEEecC-CC----------------CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCH----HHHHHHHHHH
Q 012132 379 MAFQLPVLGTA-AG----------------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV----ERRLTMGKRG 437 (470)
Q Consensus 379 ma~G~PvI~s~-~~----------------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~----~~~~~~~~~a 437 (470)
|++|+|+|... .. +.+.++.+.+....+..++.+++.+++.+.++++|+ +.++++.+..
T Consensus 283 ~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 283 ALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF 362 (385)
T ss_pred HHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 99999998872 11 122223333222223333445899999999999999 8887776655
Q ss_pred HHHHHHHcC
Q 012132 438 YERVKEIFQ 446 (470)
Q Consensus 438 ~~~~~~~fs 446 (470)
.+ +.+...
T Consensus 363 ~~-~~~~l~ 370 (385)
T TIGR00215 363 EE-LRQRIY 370 (385)
T ss_pred HH-HHHHhc
Confidence 44 334344
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=162.89 Aligned_cols=218 Identities=12% Similarity=0.134 Sum_probs=170.8
Q ss_pred ccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEe-
Q 012132 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN- 277 (470)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vG- 277 (470)
.+...+.+++.+....+.+..++... . ...++..||.+.- ... +.... ..+..+++++
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~-~-~~~~v~~Ip~~~~-~~~-~~~s~-----------------r~~~~~I~v~i 327 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYREN-Y-VEFDISRITPFDT-RLR-LGQSQ-----------------QLYETEIGFWI 327 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhc-c-cCCcceeeCccce-EEe-cChhh-----------------cccceEEEEEc
Confidence 34556667776666555555544321 1 2234667775543 211 11000 1234566778
Q ss_pred -ecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC------------------
Q 012132 278 -SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ------------------ 338 (470)
Q Consensus 278 -rl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~------------------ 338 (470)
|+ +.|.++.+++++.++.+ ++|+++|.+.|.+.+. .+.+.++++++++++.
T Consensus 328 drL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 328 DGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNNDN--DITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred CCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCch--hHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 99 99999999999999876 6799999999987431 3567788888887766
Q ss_pred -----------CcEEEecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeee
Q 012132 339 -----------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405 (470)
Q Consensus 339 -----------~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l 405 (470)
++|.|.|... ++.+.|+.+.++|.+|. .|+|+ +.+||++.|+|+| .-|..++|.++.||++
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~l 471 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGYI 471 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcEE
Confidence 7999999886 99999999999999999 99999 9999999999999 4567999999999999
Q ss_pred ecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 406 HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+ +| ..+|+++|..++.+++.+.++...+++.+.+ ||-+++.++|.+++
T Consensus 472 i--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 472 I--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred e--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 9 56 9999999999999999999999999999854 99999999998753
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-15 Score=134.28 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=226.3
Q ss_pred cccEEEEEe-eccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 73 KSKLVLLVS-HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 73 ~~~kIl~v~-~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
++++++++. .+. |-+-++..=|..|++.|++|.++....+.+. ++.+....+.++....
T Consensus 11 ~k~ra~vvVLGDv---GRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-------e~l~~hprI~ih~m~~l~~~~~~p~~ 80 (444)
T KOG2941|consen 11 KKKRAIVVVLGDV---GRSPRMQYHALSLAKLGFQVDLIGYVESIPL-------EELLNHPRIRIHGMPNLPFLQGGPRV 80 (444)
T ss_pred ccceEEEEEeccc---CCChHHHHHHHHHHHcCCeEEEEEecCCCCh-------HHHhcCCceEEEeCCCCcccCCCchh
Confidence 345555444 333 3345566678999999999999985554322 3333344444443221
Q ss_pred --------------hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc-cchh---------hhh
Q 012132 142 --------------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-YFKL---------DYV 197 (470)
Q Consensus 142 --------------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~---------~~~ 197 (470)
.+.+.....+|++.+++|.....+.......+- ...+++..+|++... ..+. ...
T Consensus 81 ~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l-~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~ 159 (444)
T KOG2941|consen 81 LFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSIL-TGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLV 159 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHH-hcceEEEEehhhHHHHHHHhhcCCCCchHHHH
Confidence 112233588999999987643333222211111 225788888876432 1000 001
Q ss_pred ccc-----ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCc---------hhhhhHhhh---------HHHHH
Q 012132 198 KHL-----PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS---------KELMEVAED---------NVAKR 254 (470)
Q Consensus 198 ~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd---------~~~~~~~~~---------~~~~~ 254 (470)
+.+ +.++...+++.++. +.+.+..|+. +..|++.-.. .+.|.+... +..+.
T Consensus 160 ~~~E~~fgk~a~~nLcVT~AMr----~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~ 233 (444)
T KOG2941|consen 160 RWLEKYFGKLADYNLCVTKAMR----EDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKA 233 (444)
T ss_pred HHHHHHhhcccccchhhHHHHH----HHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccch
Confidence 111 23344455555554 4444566654 3455553322 112332211 11112
Q ss_pred HHHHHHHHHcC------CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHH
Q 012132 255 VLREHVRESLG------VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 328 (470)
Q Consensus 255 ~~~~~~r~~~~------~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l 328 (470)
.++..+-++.. .++.+.+++.....++..++..+++|+..--+.+.+.+...|++-.+|.|.| |..+.+
T Consensus 234 ~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-----PlkE~Y 308 (444)
T KOG2941|consen 234 LERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-----PLKEKY 308 (444)
T ss_pred hhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----chhHHH
Confidence 22333333332 2344567777778899999999999998655555555556799999999999 789999
Q ss_pred HHHHHhcCCCCcEEEec-c--cCCHHHHHHhcCEEE--EccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCcee
Q 012132 329 RNYVMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLV--QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTG 403 (470)
Q Consensus 329 ~~~~~~~~l~~~V~~~g-~--~~~~~~~~~~aDv~v--~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G 403 (470)
.+.++++++. +|.+.- + .+|.+.+++.||+.| .+|.. .=..|++++....||+||++-+..-+.|+|.+++||
T Consensus 309 ~~~I~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNG 386 (444)
T KOG2941|consen 309 SQEIHEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENG 386 (444)
T ss_pred HHHHHHhccc-ceeeeecccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCc
Confidence 9999999886 565543 3 489999999999866 45542 556799999999999999999999999999999999
Q ss_pred eeecCCCCChHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 404 LLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 404 ~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
+++.. .++|++.+..+.+ +.+...++.+++++. +...|+..-++.
T Consensus 387 lvF~D----s~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~--~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 387 LVFED----SEELAEQLQMLFKNFPDNADELNQLKKNLREE--QELRWDESWERT 435 (444)
T ss_pred eEecc----HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH--HhhhHHHHHHHh
Confidence 99984 7999999999999 788889999998886 335666554443
|
|
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=142.56 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=97.4
Q ss_pred CeEEEEEeecccCCCHHHHHH-HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 270 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~-a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
-++++++|++.+.|+++.+++ ++.++.+ +.|+++|.|+|.++ . +++++ ..++|+++|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~-----~--~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGP-----D--ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCH-----H--HHHHh-----cCCCEEEcCCHH
Confidence 367899999999999999999 9988866 55899999999973 2 24444 125899999988
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++.++++.+|+++.|+.. .+++|.+++|||++|+|||+++. +..+++.....|.++ .++ +++++++|.++++|
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCC--HHHHHHHHHHHhcC
Confidence 999999999999999963 67999999999999999999998 566666555677777 666 99999999999875
|
|
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=149.98 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=148.4
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH---HHHHHHHHHHhcCCCCcEE
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~V~ 342 (470)
++++.+.|+++.|+..+|+.++++..+.++.+.+.+. ...++++++|.+.+.+.+ +.+.+.+++++....++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 4467789999999999999999999999987755431 135999999998765432 3445556666545567888
Q ss_pred Eec-ccCCHHH-HHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCC----------
Q 012132 343 FVN-KTLTVAP-YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK---------- 410 (470)
Q Consensus 343 ~~g-~~~~~~~-~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d---------- 410 (470)
|+. +...++. +++.+|++++||+...|++|++-+-||..|.+-+++--|...|.. ++.||+.+....
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~ 629 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDA 629 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcch
Confidence 875 5555555 579999999999866899999999999999999999989888887 789999998832
Q ss_pred CChHHHHHHHHHHHh----C------HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLAT----H------VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 411 ~~~~~la~~i~~ll~----~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.+.++|.+.|++-+- + |..+.+|.+++.+.+...|||++|+++|.+-|
T Consensus 630 ~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 630 EEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 236777777755333 3 66788898988888777899999999998644
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-13 Score=129.61 Aligned_cols=296 Identities=17% Similarity=0.134 Sum_probs=176.4
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------chhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+...... ...++...+. .++.+..|..++.. ......+.+-.++.+-..+......+....
T Consensus 140 ~~~D~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLL-PQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTTH-HHHHHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHH-HHHHHhhcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 4678999998765543 3455555554 57888888765433 112233333444555555555555555554
Q ss_pred hhhhccC-------------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 222 RERLRIK-------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 222 ~~~~~~~-------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
.+.+|.. .-++.+.|-|||.+.+........-....++++++++ .+..+|+.+.|++..||+..=
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 4444331 1237889999999998765443333334567788775 335788899999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHh----cCCCC--cEEEecc---cCCHHHHHH
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~V~~~g~---~~~~~~~~~ 355 (470)
+.||+++.+..++. ..++.|+-++.......+ +..++.+++.+ +|-.+ .|.++.. .+++..+|+
T Consensus 295 l~Afe~fL~~~P~~---~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPEY---RGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GGG---TTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcCc---cCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 99999998866552 256888877764333223 44555555543 33222 2566553 388999999
Q ss_pred hcCEEEEccCCcccccchHHHHHHhcCCC----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHH
Q 012132 356 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 430 (470)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (470)
.||+++.+|. .+|+-++..|+.+|..+ +|.|...|..+.+. +..++++|.| ++++|++|.+.++ .++.+
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~--~~al~VNP~d--~~~~A~ai~~AL~M~~~Er 445 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLS--EAALLVNPWD--IEEVADAIHEALTMPPEER 445 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-T--TS-EEE-TT---HHHHHHHHHHHHT--HHHH
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHcC--CccEEECCCC--hHHHHHHHHHHHcCCHHHH
Confidence 9999999999 99999999999999876 77888888888773 3459999999 9999999999999 45667
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+..-+..++++.+ ++...+++.+++-++
T Consensus 446 ~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 446 KERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 7777777887755 888888888776554
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B. |
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-13 Score=126.37 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=173.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec-----C---------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----K--------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------- 140 (470)
+||++.+. ..||.-.-...++++|.++||+|.+++...+.+.. .+...|+.+... .
T Consensus 2 ~~i~~~~G--GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~--------l~~~~g~~~~~~~~~~l~~~~~~~~~~ 71 (352)
T PRK12446 2 KKIVFTGG--GSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT--------IIEKENIPYYSISSGKLRRYFDLKNIK 71 (352)
T ss_pred CeEEEEcC--CcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccc--------cCcccCCcEEEEeccCcCCCchHHHHH
Confidence 45666552 22333455788999999999999999865543211 111222222111 1
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhh-hcCCccccceeeEEeeeccccchhhhhcccccccceeee
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
....+.++.+||+||++....+.....+.. .+ .|++ +|+..... ...-+...++.+.++..
T Consensus 72 ~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~-----~p~~--i~e~n~~~-g~~nr~~~~~a~~v~~~ 143 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNR-----VPVL--LHESDMTP-GLANKIALRFASKIFVT 143 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcC-----CCEE--EECCCCCc-cHHHHHHHHhhCEEEEE
Confidence 012345679999999987655432222221 12 2333 34432211 11111112233333322
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
.... ..+++.+++.++.|++..+..... ++..++.+++++++++++.+|.- .|-..+-
T Consensus 144 f~~~----------~~~~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS---~Ga~~in 201 (352)
T PRK12446 144 FEEA----------AKHLPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGS---LGAKKIN 201 (352)
T ss_pred ccch----------hhhCCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCc---cchHHHH
Confidence 2111 112345678888888877654221 23456678887777777666632 3344444
Q ss_pred HHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-CCHHHHHHhcCEEEEccCCc
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAW 367 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~ 367 (470)
+++.++...+. .++++++ +|.. .+.+.+.. . +++...++. +++.++|+.||++|.
T Consensus 202 ~~~~~~l~~l~------~~~~vv~~~G~~-----~~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvIs----- 258 (352)
T PRK12446 202 ETVREALPELL------LKYQIVHLCGKG-----NLDDSLQN----K---EGYRQFEYVHGELPDILAITDFVIS----- 258 (352)
T ss_pred HHHHHHHHhhc------cCcEEEEEeCCc-----hHHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEEE-----
Confidence 44444333221 2355554 4443 22222221 1 244556776 789999999999994
Q ss_pred ccccchHHHHHHhcCCCEEecCCCC---------cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 368 GECFGRITIEAMAFQLPVLGTAAGG---------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~s~~~g---------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
-+-+.++.|++++|+|.|...... ..+.+.+.+.|..+...+.+++.+.+++.++++|++.+++ ++
T Consensus 259 -r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~~- 333 (352)
T PRK12446 259 -RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---AL- 333 (352)
T ss_pred -CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---HH-
Confidence 445889999999999999885431 1223434556666665555589999999999988765432 22
Q ss_pred HHHHHHcChhHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+.+.....++++.+++.
T Consensus 334 ----~~~~~~~aa~~i~~~i~ 350 (352)
T PRK12446 334 ----KKYNGKEAIQTIIDHIS 350 (352)
T ss_pred ----HHcCCCCHHHHHHHHHH
Confidence 22555566666655543
|
|
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-12 Score=118.96 Aligned_cols=310 Identities=16% Similarity=0.099 Sum_probs=184.5
Q ss_pred CchhHHHHHHHHHHHhCCce-EEEEecCCCCCchhHHHhhhhhhhhcceeeEe--cC----------------------C
Q 012132 87 SGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--AK----------------------G 141 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------~ 141 (470)
||.-.....++++|.++|++ |.++......+.. .....++.+.. .. .
T Consensus 11 GGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~--------l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T COG0707 11 GGHVFPALALAEELAKRGWEQVIVLGTGDGLEAF--------LVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQ 82 (357)
T ss_pred ccchhHHHHHHHHHHhhCccEEEEecccccceee--------eccccCceEEEEecccccccCcHHHHHHHHHHHHHHHH
Confidence 34357789999999999995 6665332222111 00111222211 10 1
Q ss_pred hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 142 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+.+.++.+||+|+............+... . ..|++.+..+...+.... .+......+..+....
T Consensus 83 a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~-~---~iPv~ihEqn~~~G~ank----~~~~~a~~V~~~f~~~------- 147 (357)
T COG0707 83 ARKILKKLKPDVVIGTGGYVSGPVGIAAKL-L---GIPVIIHEQNAVPGLANK----ILSKFAKKVASAFPKL------- 147 (357)
T ss_pred HHHHHHHcCCCEEEecCCccccHHHHHHHh-C---CCCEEEEecCCCcchhHH----HhHHhhceeeeccccc-------
Confidence 234567799999999775543332222221 1 135554444433322211 1112222222222210
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~ 301 (470)
.-+.+.+++.+..|++..+.+. .+. ...+.... .++++|+++|. ..|...+-+++.++...+.
T Consensus 148 --~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~--~~~~~ilV~GG---S~Ga~~ln~~v~~~~~~l~- 210 (357)
T COG0707 148 --EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGR--LDKKTILVTGG---SQGAKALNDLVPEALAKLA- 210 (357)
T ss_pred --cccCCCCceEEecCcccHHhhc-cch--------hhhhhhcc--CCCcEEEEECC---cchhHHHHHHHHHHHHHhh-
Confidence 2234556789999999888775 221 11222211 26666766663 3455556666655554332
Q ss_pred hcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhc
Q 012132 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
.+++++...+. ...+++++...+++. +.+.++.++|..+|++||++| .-+-++++.|..++
T Consensus 211 -----~~~~v~~~~G~-----~~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvI------sRaGa~Ti~E~~a~ 271 (357)
T COG0707 211 -----NRIQVIHQTGK-----NDLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVI------SRAGALTIAELLAL 271 (357)
T ss_pred -----hCeEEEEEcCc-----chHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEE------eCCcccHHHHHHHh
Confidence 24666555443 135566666665554 889999999999999999999 34457999999999
Q ss_pred CCCEEecCCCCc--------ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 382 QLPVLGTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 382 G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
|+|+|--..+.. ...+.+...|.+++..+.+++.+.+.|.+++++++..+.|.+++++.. -...+++
T Consensus 272 g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~-----~p~aa~~ 346 (357)
T COG0707 272 GVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG-----KPDAAER 346 (357)
T ss_pred CCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHH
Confidence 999997765432 223445667888887776789999999999999999999999888743 3344555
Q ss_pred HHHHHHH
Q 012132 454 IAVVLKE 460 (470)
Q Consensus 454 ~~~~~~~ 460 (470)
+.+....
T Consensus 347 i~~~~~~ 353 (357)
T COG0707 347 IADLLLA 353 (357)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-13 Score=128.52 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=140.7
Q ss_pred cccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHH-HHHHHHHH----HHHHc----CCC-CCCe
Q 012132 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-AKRVLREH----VRESL----GVR-NEDL 271 (470)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~~----~r~~~----~~~-~~~~ 271 (470)
.++.+.++|..++.....- ++-.+ =.|+|||++.+.|....+-. .....|+. ++..+ .++ ++.+
T Consensus 221 ~AdvFTTVSeITa~Ea~~L----L~r~p--DvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl 294 (633)
T PF05693_consen 221 YADVFTTVSEITAKEAEHL----LKRKP--DVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKTL 294 (633)
T ss_dssp HSSEEEESSHHHHHHHHHH----HSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGEE
T ss_pred hcCeeeehhhhHHHHHHHH----hCCCC--CEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccceE
Confidence 4566777777776554432 23222 37889999998766543211 11111222 23332 333 3457
Q ss_pred EEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcC-----------------------------
Q 012132 272 LFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----------------------------- 321 (470)
Q Consensus 272 ~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~----------------------------- 321 (470)
+|...||.+ ..||+|.+|||+++|...++..+.+..=+-|+|+-.....-
T Consensus 295 ~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~ 374 (633)
T PF05693_consen 295 YFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRL 374 (633)
T ss_dssp EEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899996 48999999999999987776643222223444433221000
Q ss_pred -----------------hH----------------------------HHHHHHHHHHhcCCC----Cc--EEEecc----
Q 012132 322 -----------------TK----------------------------FESELRNYVMQKKIQ----DR--VHFVNK---- 346 (470)
Q Consensus 322 -----------------~~----------------------------~~~~l~~~~~~~~l~----~~--V~~~g~---- 346 (470)
+. ..+.+-..++++++. ++ |+|++.
T Consensus 375 ~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~ 454 (633)
T PF05693_consen 375 FESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSG 454 (633)
T ss_dssp HHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---T
T ss_pred HHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccC
Confidence 00 012223333344442 23 556552
Q ss_pred -----cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee----c-Cceeeee-cCCCCChHH
Q 012132 347 -----TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV----N-GTTGLLH-PVGKEGITP 415 (470)
Q Consensus 347 -----~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~----~-~~~G~l~-~~~d~~~~~ 415 (470)
.-+..+++..+|+.|+||. +|++|.+.+|+.++|+|.|+|+..|..-.+. + ...|+.+ +-.+.+.++
T Consensus 455 ~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e 532 (633)
T PF05693_consen 455 TDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDE 532 (633)
T ss_dssp TSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHH
T ss_pred CCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHH
Confidence 1567899999999999999 9999999999999999999999888543332 1 3345543 444434444
Q ss_pred ----HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 416 ----LAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 416 ----la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+++.|..+.. ++..+..+..++.+ ..+.++|+++...|.+.|..++++.
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~-LS~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAER-LSDLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHH-HGGGGBHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 4555555544 45555666555544 5567999999999999999988754
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >PRK10117 trehalose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-12 Score=124.88 Aligned_cols=296 Identities=11% Similarity=0.049 Sum_probs=197.5
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-------hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|.+|+...... ...++...+. .++.+..|..++..- .....+.+-.++-+-..+......+.+..
T Consensus 122 ~~~D~VWVHDYhL~ll-p~~LR~~~~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 122 KDDDIIWIHDYHLLPF-ASELRKRGVN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCCCEEEEeccHhhHH-HHHHHHhCCC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHH
Confidence 3458999998655443 3334444443 467788886554321 11222222233333333333333333322
Q ss_pred hhhhcc------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
.+.++. ..-++.+.|-|||.+.|........ ....+++|++++ ++.+|+.+.|++..||+..=+
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl 274 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK---NVQNIFSVERLDYSKGLPERF 274 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC---CCeEEEEecccccccCHHHHH
Confidence 222221 1124788999999999876543222 223456777775 567788899999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHhc----CCCC--cEEEecc---cCCHHHHHHh
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLAA 356 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~~----~l~~--~V~~~g~---~~~~~~~~~~ 356 (470)
.||+++++..++. ..++.|+-+....-...+ +..++++++.+. |-.+ -|+++.. .+++..+|+.
T Consensus 275 ~Afe~fL~~~Pe~---~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ 351 (474)
T PRK10117 275 LAYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351 (474)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHh
Confidence 9999998855542 246777766653322212 344455555442 2222 2555543 2788999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCC-----CEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERR 430 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~ 430 (470)
||+++.++. .+|+-++..|+.||.. ++|.|...|..+.+. ..++++|.| .++++++|.+.++. ++.+
T Consensus 352 ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d--~~~~A~Ai~~AL~Mp~~Er 424 (474)
T PRK10117 352 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYD--RDEVAAALDRALTMPLAER 424 (474)
T ss_pred ccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCC--HHHHHHHHHHHHcCCHHHH
Confidence 999999999 9999999999999976 388898888888773 379999999 99999999999994 5666
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++..+..++.+.+ ++...+++.+++-+.++-
T Consensus 425 ~~R~~~l~~~v~~-~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 425 ISRHAEMLDVIVK-NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHHhhh-CCHHHHHHHHHHHHHHhh
Confidence 6666777777755 899999999988777764
|
|
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=108.83 Aligned_cols=92 Identities=27% Similarity=0.263 Sum_probs=85.8
Q ss_pred EEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 359 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+++.|+. .++++..++|+||||+|+|+++.++..+++.++..++.++ | ++++.+++..+++|++.+++++++++
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4677888 8999999999999999999999999999999988899988 5 99999999999999999999999999
Q ss_pred HHHHHHcChhHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~ 456 (470)
+++.++|+|++.++++++
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 999999999999998863
|
|
| >PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.8e-11 Score=123.32 Aligned_cols=296 Identities=10% Similarity=0.051 Sum_probs=196.4
Q ss_pred cEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-------chhhhhcccccccceeeeehhhHHHHHHhhhhh
Q 012132 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (470)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (470)
|+|.+|+...... ...++...+. .++.+..|..++.. +.....+.+-.++-+-......+..+..-..+.
T Consensus 203 d~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMVL-PTFLRKRFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhHH-HHHHHhhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 8999998765443 3444444544 46778888765433 112223333344444444444444444433333
Q ss_pred hccC---------------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 225 LRIK---------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 225 ~~~~---------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
+|.. .-++.+.|-|||.+.|.............++++++++- .++.+|+.+.|++..||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 3322 22477899999999987654332223335667777752 3567888999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHh----cCCCC--cEEEecc---cCCHHHHHHh
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLAA 356 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~V~~~g~---~~~~~~~~~~ 356 (470)
.||+++++..++. ..++.|+-+........+ +..++.+++.+ +|-.+ .|+++.. .+++..+|+.
T Consensus 359 ~A~e~~L~~~P~~---~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPEW---QGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCccc---cCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 9999998744331 134567766643222212 33444455543 23221 3666653 2789999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCC-------------------CEEecCCCCcceeeecCceeeeecCCCCChHHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQL-------------------PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 417 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-------------------PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la 417 (470)
||+++.++. .+|+-++..|+.+|.. .+|.|...|....+. ..++++|.| +++++
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d--~~~~a 508 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWN--IDAVA 508 (854)
T ss_pred ccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECCCC--HHHHH
Confidence 999999999 9999999999999864 377777777666662 369999999 99999
Q ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 418 KNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 418 ~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++|.+.++. ++.++..-+..++++.. ++...+++.++.-+++..
T Consensus 509 ~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 509 DAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARSFLQDLERTC 553 (854)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHH
Confidence 999999994 55566666677777754 899999998887776653
|
|
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=119.47 Aligned_cols=185 Identities=13% Similarity=0.134 Sum_probs=134.4
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~ 280 (470)
...+.+++......+.+.+ +++ +..++.++|-|+=.+ +.... ..+..+++++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~----r~~-~~~~~~~ip~g~i~~-~~~~~-------------------r~~~~~l~~t~-- 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKE----LLD-NEYQEQISQLGYLYP-FKKDN-------------------KYRKQALILTN-- 290 (438)
T ss_pred cccCeEEeCCHHHHHHHHH----HhC-cccCceEEEEEEEEe-ecccc-------------------CCcccEEEECC--
Confidence 4556666655554444444 333 245677777776522 10000 12233445551
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC-CHHHHHHhcCE
Q 012132 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAIDV 359 (470)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~-~~~~~~~~aDv 359 (470)
+..|++++.|.+ +.|+++|.| |.+. +..+.|.++ .++ ++.+.+.|... ++.++|..||+
T Consensus 291 -----s~~I~~i~~Lv~-------~lPd~~f~I-ga~t----e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dl 350 (438)
T TIGR02919 291 -----SDQIEHLEEIVQ-------ALPDYHFHI-AALT----EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDI 350 (438)
T ss_pred -----HHHHHHHHHHHH-------hCCCcEEEE-EecC----cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccE
Confidence 889999999877 559999999 7764 345788887 666 56777888765 99999999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
++..|. .|++++++.||+..|+||++.+.. |..+++.+ |.+++.++ +++|+++|.+++.+++.+++.-+.-+
T Consensus 351 yLdin~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~~~~~~~q~ 423 (438)
T TIGR02919 351 YLDINH--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQFRELLEQQR 423 (438)
T ss_pred EEEccc--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999 999999999999999999999865 55677754 89999999 99999999999999976665444333
Q ss_pred H
Q 012132 439 E 439 (470)
Q Consensus 439 ~ 439 (470)
+
T Consensus 424 ~ 424 (438)
T TIGR02919 424 E 424 (438)
T ss_pred H
Confidence 3
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.6e-14 Score=119.38 Aligned_cols=158 Identities=13% Similarity=-0.010 Sum_probs=83.7
Q ss_pred EEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHH-Hhhhhhh----hhcceeeEecCChhhHHhhcC
Q 012132 77 VLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-YSLEHKM----WDRGVQVISAKGQETINTALK 150 (470)
Q Consensus 77 Il~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 150 (470)
|+++...... ||+++++.+++++|+++||+|++++........... ....... .................++.+
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 5666666554 777999999999999999999999965544322110 0000000 000000001112334556679
Q ss_pred CcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc--------cch-----hhhhcccccccceeeeehhhHHHH
Q 012132 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--------YFK-----LDYVKHLPLVAGAMIDSHVTAEYW 217 (470)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~--------~~~-----~~~~~~~~~~~~~~~~s~~~~~~~ 217 (470)
||+||+|......+...... ..+.+++.|+.... ... .......+..+.++++|..+.+.+
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l 154 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDEL 154 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHH
T ss_pred CCeEEecccchhHHHHHhcc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHH
Confidence 99999998655443333322 25788999987521 100 111222456778888888886655
Q ss_pred HHhhhhhhccCCCceEEEecCCchhhhh
Q 012132 218 KNRTRERLRIKMPDTYVVHLGNSKELME 245 (470)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~ 245 (470)
. + +|+++.++.|||||+|.+.|.
T Consensus 155 ~----~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 155 I----K-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp H----H-HT--SS-EEE----B-CCCH-
T ss_pred H----H-hCCcccCCEEEECCccHHHcC
Confidence 5 3 688889999999999999873
|
|
| >COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-10 Score=110.11 Aligned_cols=296 Identities=15% Similarity=0.129 Sum_probs=197.1
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc--c-----hhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--F-----KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+=|+|.+|+....+ +..+++..++.. ++.+..|-.++.. + ...+...+-.++-+-......+..+....
T Consensus 146 ~~gDiIWVhDYhL~L-~P~mlR~~~~~~--~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~ 222 (486)
T COG0380 146 EPGDIIWVHDYHLLL-VPQMLRERIPDA--KIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLC 222 (486)
T ss_pred CCCCEEEEEechhhh-hHHHHHHhCCCc--eEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHH
Confidence 456999999866544 345566666653 6778888654322 1 11222222233333333444443333333
Q ss_pred hhhhc-------------cCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHH
Q 012132 222 RERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (470)
Q Consensus 222 ~~~~~-------------~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~l 288 (470)
.+..+ -...++..+|-|+|++.|............-.++++.++ .+..+|+.+.|++.-||+..=
T Consensus 223 ~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~r 300 (486)
T COG0380 223 SRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQR 300 (486)
T ss_pred HHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCcHHH
Confidence 22221 122457889999999998766433222233456666665 347888889999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH----HHHHHHHHHHhc----CCCC--cEEEecc---cCCHHHHHH
Q 012132 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLA 355 (470)
Q Consensus 289 l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~~----~l~~--~V~~~g~---~~~~~~~~~ 355 (470)
+.||.++++..++. ..++.++-++.....+-+ +..++++++.+. |-.+ -|+|+-. .+++..+|.
T Consensus 301 l~Afe~lL~~~Pe~---~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 301 LLAFERLLEEYPEW---RGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHhChhh---hCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 99999998755552 246778877776544333 344444444432 2211 2555553 278999999
Q ss_pred hcCEEEEccCCcccccchHHHHHHhcC----CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHH
Q 012132 356 AIDVLVQNSQAWGECFGRITIEAMAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 430 (470)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (470)
.||+++.++. .+|+-++..|+.+|. =|.|-|...|....+.+ .++++|.| .++++++|.+.++ .++.+
T Consensus 378 ~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d--~~~va~ai~~AL~m~~eEr 450 (486)
T COG0380 378 AADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWD--TKEVADAIKRALTMSLEER 450 (486)
T ss_pred hhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCC--hHHHHHHHHHHhcCCHHHH
Confidence 9999999999 999999999999985 47888887777776643 69999999 9999999999999 45666
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
++.-+..++.+.+ ++...+++.+++-+..
T Consensus 451 ~~r~~~~~~~v~~-~d~~~W~~~fl~~la~ 479 (486)
T COG0380 451 KERHEKLLKQVLT-HDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 6666666776654 8888888887765554
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-10 Score=108.40 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=123.3
Q ss_pred HHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCC-
Q 012132 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 338 (470)
Q Consensus 260 ~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~- 338 (470)
.|+.+|+|++.++++.++++ .|=-+..++++.++++ +.|+.+|++..... ..++.+++.+++.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~-------~vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILK-------AVPNSRLWLLRFPA----SGEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHH-------HSTTEEEEEEETST----THHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEeeCCH----HHHHHHHHHHHHcCCCh
Confidence 37899999999888877764 5777899999998877 56999999887542 2467888999999985
Q ss_pred CcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce-----eeec-CceeeeecCCC
Q 012132 339 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-----IVVN-GTTGLLHPVGK 410 (470)
Q Consensus 339 ~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e-----~v~~-~~~G~l~~~~d 410 (470)
+++.|.+.. ++-...|+.+|+++=+. .-+-+.+.+||+.+|+|||+-....... ++.. |-..+++. +
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s 416 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--S 416 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--S
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--C
Confidence 789998864 44556678899999775 3455799999999999999865222111 1111 21223333 2
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~ 461 (470)
.++..+.-.+|.+|++.++.+.+.-++...+ .|+...+++++++.|+++
T Consensus 417 --~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 417 --EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999888877654 489999999999999886
|
|
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=105.24 Aligned_cols=253 Identities=15% Similarity=0.151 Sum_probs=147.7
Q ss_pred EEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------hh
Q 012132 76 LVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QE 143 (470)
Q Consensus 76 kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 143 (470)
||+|.+...+- |.| -.+...||++|+++|++|.+++...+.. +.+.+...|+.++.... ..
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~-------~~~~i~~~g~~v~~~~~~~~~~~d~~~~~ 73 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGD-------LIDLLLSAGFPVYELPDESSRYDDALELI 73 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-------HHHHHHHcCCeEEEecCCCchhhhHHHHH
Confidence 57777776554 444 5788999999999999999999664431 23455667777765432 23
Q ss_pred hHHhhcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 144 TINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
...+..+||+|++.+... ..+.. .++... +.+..+-+...+.+ ..+.++..... .+...
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~-~~k~~~-----~~l~~iDD~~~~~~---------~~D~vin~~~~-~~~~~---- 133 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEK-LIKEFG-----RKILVIDDLADRPH---------DCDLLLDQNLG-ADASD---- 133 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHH-HHHHhC-----CeEEEEecCCCCCc---------CCCEEEeCCCC-cCHhH----
Confidence 445567899999876432 33332 232222 12223333321111 12222222222 11111
Q ss_pred hhhc-cCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 012132 223 ERLR-IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 223 ~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~ 301 (470)
..+ .+... .+..|.+.-...+...... .....++ +.+.++++.|...+.+....+++++.++.
T Consensus 134 -y~~~~~~~~--~~l~G~~Y~~lr~eF~~~~----~~~~~~~----~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----- 197 (279)
T TIGR03590 134 -YQGLVPANC--RLLLGPSYALLREEFYQLA----TANKRRK----PLRRVLVSFGGADPDNLTLKLLSALAESQ----- 197 (279)
T ss_pred -hcccCcCCC--eEEecchHHhhhHHHHHhh----Hhhhccc----ccCeEEEEeCCcCCcCHHHHHHHHHhccc-----
Confidence 112 23232 3445665444332211100 0011110 23467788888777676677788876541
Q ss_pred hcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHh
Q 012132 302 KKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (470)
Q Consensus 302 ~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (470)
++++ .+|+|.+. +..+++++.++.. +++++.++++++.++|+.||++|.+ .|.++.|+++
T Consensus 198 -----~~~~i~vv~G~~~----~~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a 258 (279)
T TIGR03590 198 -----INISITLVTGSSN----PNLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCC 258 (279)
T ss_pred -----cCceEEEEECCCC----cCHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHH
Confidence 2333 33677764 3456777777654 4799999999999999999999963 3689999999
Q ss_pred cCCCEEecCC
Q 012132 381 FQLPVLGTAA 390 (470)
Q Consensus 381 ~G~PvI~s~~ 390 (470)
+|+|+|+...
T Consensus 259 ~g~P~i~i~~ 268 (279)
T TIGR03590 259 LGLPSLAICL 268 (279)
T ss_pred cCCCEEEEEe
Confidence 9999998754
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-10 Score=106.45 Aligned_cols=343 Identities=13% Similarity=0.092 Sum_probs=208.2
Q ss_pred CcccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----h
Q 012132 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----Q 142 (470)
Q Consensus 68 ~~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 142 (470)
.....++.+|.++++.+...........+.+.+.+.-+||..+....+. .. .+.+.+...--++++..+ .
T Consensus 253 ~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~-~d----al~~rI~a~~~~~~~~~~~dd~e~ 327 (620)
T COG3914 253 IKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPH-TD----ALQERISAAVEKWYPIGRMDDAEI 327 (620)
T ss_pred ccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCC-ch----hHHHHHHHhhhheeccCCcCHHHH
Confidence 3345678899999999887666677888888887777999888755222 22 123333333233344442 1
Q ss_pred hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeee----ehhhHHHHH
Q 012132 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID----SHVTAEYWK 218 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~~~~ 218 (470)
-.-+.....||.+--+....-....++..+ | .|+..++-+..+..- .+..+.++.+ -.....++.
T Consensus 328 a~~I~~d~IdILvDl~g~T~d~r~~v~A~R-p---APiqvswlGy~aT~g-------~p~~DY~I~D~y~vPp~ae~yys 396 (620)
T COG3914 328 ANAIRTDGIDILVDLDGHTVDTRCQVFAHR-P---APIQVSWLGYPATTG-------SPNMDYFISDPYTVPPTAEEYYS 396 (620)
T ss_pred HHHHHhcCCeEEEeccCceeccchhhhhcC-C---CceEEeecccccccC-------CCcceEEeeCceecCchHHHHHH
Confidence 233345678888754433222112222211 1 344444443322111 1222333322 244455555
Q ss_pred HhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 012132 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (470)
+++.+ ++ -.+-++| .+.+...+ --|..+|+|++.++++++++ ..|-...+++-..++.+
T Consensus 397 Ekl~R---Lp-----~cy~p~d--~~~~v~p~--------~sR~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~- 455 (620)
T COG3914 397 EKLWR---LP-----QCYQPVD--GFEPVTPP--------PSRAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS- 455 (620)
T ss_pred HHHHh---cc-----cccCCCC--CcccCCCC--------cchhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH-
Confidence 55432 11 1112222 22222111 13678999999888877774 56777788888777765
Q ss_pred HHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 299 l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
..|+..|++.|+|++ +...+.+++++++.|+ .++++|.+.. ++..+.|..||+++-+. .-+-..+.
T Consensus 456 ------~vP~Svl~L~~~~~~--~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa 524 (620)
T COG3914 456 ------AVPNSVLLLKAGGDD--AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTA 524 (620)
T ss_pred ------hCCCcEEEEecCCCc--HHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc---cCCCccch
Confidence 459999999998743 2578999999999998 4789999974 66778899999998665 34557899
Q ss_pred HHHHhcCCCEEec-------CCCC-cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--Hc
Q 012132 376 IEAMAFQLPVLGT-------AAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IF 445 (470)
Q Consensus 376 lEAma~G~PvI~s-------~~~g-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~f 445 (470)
+||+-+|+|||+- +.|+ +..-. |..-+++.+ .++..+.-..+-+|...+++....-++.... .|
T Consensus 525 ~daLwm~vPVlT~~G~~FasR~~~si~~~a--gi~e~vA~s----~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~ 598 (620)
T COG3914 525 SDALWMGVPVLTRVGEQFASRNGASIATNA--GIPELVADS----RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLF 598 (620)
T ss_pred HHHHHhcCceeeeccHHHHHhhhHHHHHhc--CCchhhcCC----HHHHHHHHHHhcccHHHHHhhHHHHHhccccCccc
Confidence 9999999999964 3332 11111 222223332 4566666666666776666655444433333 58
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 012132 446 QEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 446 s~~~~~~~~~~~~~~~l~~ 464 (470)
+.+..+++++.+|.++...
T Consensus 599 d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 599 DPKAFARKLETLYWGMWSE 617 (620)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
|
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-10 Score=109.66 Aligned_cols=174 Identities=13% Similarity=0.030 Sum_probs=111.3
Q ss_pred ceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEeec--ccCCCHHHHHHHHHHHHHHHHhhcccCC
Q 012132 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVP 307 (470)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGrl--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 307 (470)
++.++.|++-....... + .+++++. .++++.|+- ...++++.+++++..+.+ + +
T Consensus 181 k~~~vGnPv~d~l~~~~---------~------~~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~-------~-~ 237 (396)
T TIGR03492 181 RASYLGNPMMDGLEPPE---------R------KPLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD-------S-Q 237 (396)
T ss_pred eEEEeCcCHHhcCcccc---------c------cccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh-------C-C
Confidence 67888888744432110 0 0444444 444444543 235678899999988743 3 5
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCC--------------CcEEEecccCCHHHHHHhcCEEEEccCCcccccch
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--------------~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~ 373 (470)
++.+++.-.+. ...+.+++..++.++. +++.+..+..++.++|+.||++|..| |.
T Consensus 238 ~~~~v~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-------Gt 306 (396)
T TIGR03492 238 PFVFLAAIVPS----LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-------GT 306 (396)
T ss_pred CeEEEEEeCCC----CCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-------CH
Confidence 77776654222 2445566666655543 23666677778999999999999776 55
Q ss_pred HHHHHHhcCCCEEecCCCCc---ceeeecC----ceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGT---TEIVVNG----TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~---~e~v~~~----~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
+..|++++|+|+|....++. ..+.... ..+......+ ++.+++++.++++|++.+++|.+++++.
T Consensus 307 ~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~~~~~~~~ 378 (396)
T TIGR03492 307 ATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERCRRNGQER 378 (396)
T ss_pred HHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 66999999999999874332 1111110 1334444455 8999999999999999888887544443
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=100.46 Aligned_cols=320 Identities=17% Similarity=0.144 Sum_probs=174.9
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh--hhhhhhcce-eeEe--------cCCh
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL--EHKMWDRGV-QVIS--------AKGQ 142 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~--------~~~~ 142 (470)
++||.++..+.+ |......|.++|+++=-+|.++...++.-.......+ ...+.-.|+ .+++ .+..
T Consensus 1 ~~ki~i~AGE~S---GDllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEAS---GDLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccc---hhhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 368999887663 3467788999998873388887754332100000000 000111111 0000 0011
Q ss_pred hhHHhhcCCcEEEEcccc-hhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhh
Q 012132 143 ETINTALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+.....+||++++-+.. ...-+...+++..|.+ |+++++--....|-..+........|...+.-..-.+++.
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i--~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~--- 152 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKI--KIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYD--- 152 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCC--CeEEEECcceeeechhhHHHHHHHhhHeeeecCCCHHHHH---
Confidence 122236899999987744 3444445555544432 3433333221222222333334455666666666555554
Q ss_pred hhhhccCCCceEEEecCCchhh-hhHhhhHHHHHHHHHHHHHHcCCCCCCe-EEEEEee-ccc-CCCHHHHHHHHHHHHH
Q 012132 222 RERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINS-VSR-GKGQDLFLHSFYESLE 297 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vGr-l~~-~Kg~~~ll~a~~~l~~ 297 (470)
++|.+ ++.|.++.-.+. +.+ .++..|+++|++.+.. +.+..|+ -+. .+....+.+|+.++.+
T Consensus 153 --k~g~~---~~yVGHpl~d~i~~~~---------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 153 --KFGLP---CTYVGHPLADEIPLLP---------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred --hcCCC---eEEeCChhhhhccccc---------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 45544 567766653333 111 1567999999987764 4455563 222 3345555566655543
Q ss_pred HHHhhcccCCceEEEEEeCCCCcChHHHHHHH-HHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHH
Q 012132 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 298 ~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~-~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (470)
++|+.++++--.. +..+.++ +..+.......+++.+ .+-.+.+.+||+.+..| |.+.+
T Consensus 219 -------~~~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aS-------GT~tL 277 (381)
T COG0763 219 -------RYPDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAAS-------GTATL 277 (381)
T ss_pred -------hCCCceEEEecCc-----HHHHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhc-------cHHHH
Confidence 5699999987765 3333333 3333322211233322 46678999999998777 89999
Q ss_pred HHHhcCCCEEec-----------------CCCCcceeeecCcee--eeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 377 EAMAFQLPVLGT-----------------AAGGTTEIVVNGTTG--LLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 377 EAma~G~PvI~s-----------------~~~g~~e~v~~~~~G--~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
|+|.+|+|.|++ ..-+.+.++.+.... ++-.. ..++.+++++..++.|...++.+.+..
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~--~~pe~la~~l~~ll~~~~~~~~~~~~~ 355 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQED--CTPENLARALEELLLNGDRREALKEKF 355 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhh--cCHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 999999999975 122333333221100 11112 238999999999999986666655544
Q ss_pred H
Q 012132 438 Y 438 (470)
Q Consensus 438 ~ 438 (470)
.
T Consensus 356 ~ 356 (381)
T COG0763 356 R 356 (381)
T ss_pred H
Confidence 3
|
|
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-09 Score=97.09 Aligned_cols=317 Identities=15% Similarity=0.146 Sum_probs=191.4
Q ss_pred chhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhc-ceeeEecC---ChhhHHhhcCCcEEEEccc--
Q 012132 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAK---GQETINTALKADLIVLNTA-- 159 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~DiV~~~~~-- 159 (470)
|--+.+.-|.++|.++ ++.+.+-+..... .+. ....+... -..+.+.. ..+.+.+..+||++++...
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg--~e~---a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtEl 134 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTG--AER---AAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETEL 134 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccH--HHH---HHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccc
Confidence 4458899999999998 5666655533221 111 11111111 11223322 3456777899998887542
Q ss_pred chhhhHHHHhhhcCCccccceeeEEeeecc-ccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecC
Q 012132 160 VAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-HYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238 (470)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng 238 (470)
++.. +....+.++|.+..+--.+.+...+ ...+......+..++.+++.+....+.+. .+|.++ +.+..|-
T Consensus 135 WPnl-i~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~GNl 206 (419)
T COG1519 135 WPNL-INELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVTGNL 206 (419)
T ss_pred cHHH-HHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEecce
Confidence 2222 1222233343222211111121111 11223344556777888888888776666 567655 5665552
Q ss_pred CchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
- .+ ..+.+ ......+.+|.+++.+ +.+++..+. ...--+.++++++++++ ++||..+++|-.-+
T Consensus 207 K-fd-~~~~~---~~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~-------~~~~~llIlVPRHp 270 (419)
T COG1519 207 K-FD-IEPPP---QLAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKK-------QFPNLLLILVPRHP 270 (419)
T ss_pred e-ec-CCCCh---hhHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHh-------hCCCceEEEecCCh
Confidence 1 11 11111 1122356788888754 556655554 23334568899988876 67899999987643
Q ss_pred CcChHHHHHHHHHHHhcCCC------------CcEEEecc-cCCHHHHHHhcCEEEE-ccCCcccccchHHHHHHhcCCC
Q 012132 319 NAQTKFESELRNYVMQKKIQ------------DRVHFVNK-TLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~l~------------~~V~~~g~-~~~~~~~~~~aDv~v~-pS~~~~E~~g~~~lEAma~G~P 384 (470)
+-.+.+++++++.|+. +.=.++|. --++..+|..+|+.+. -|. .+--|-.++|+.++|+|
T Consensus 271 ----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSl--v~~GGHN~LEpa~~~~p 344 (419)
T COG1519 271 ----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSL--VPIGGHNPLEPAAFGTP 344 (419)
T ss_pred ----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcc--cCCCCCChhhHHHcCCC
Confidence 5677888888888764 10123333 3789999999998665 455 55668899999999999
Q ss_pred EEecC----CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 385 VLGTA----AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 385 vI~s~----~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
||... ...+.+-+.+.+.|+.++. .+.+++++..+++|++.+++|++++.+.+.+
T Consensus 345 vi~Gp~~~Nf~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 345 VIFGPYTFNFSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred EEeCCccccHHHHHHHHHhcCCeEEECC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99764 2333344444555666653 6889999999988999999999999998865
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-09 Score=100.58 Aligned_cols=293 Identities=17% Similarity=0.135 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe-----------------------cCChhhH
Q 012132 89 GPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----------------------AKGQETI 145 (470)
Q Consensus 89 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~ 145 (470)
|..+...|+++|+++.-++.++...++. +...|+..+. .......
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~------------M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~ 77 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPR------------MQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVER 77 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechH------------HHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998888888755432 1112222211 0111233
Q ss_pred HhhcCCcEEEEcccc-hhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhh
Q 012132 146 NTALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (470)
Q Consensus 146 ~~~~~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (470)
....+||+|+.-+.. -...+...++..... .|+++++--....|-..+....-...|...+.-..-.+++. .
T Consensus 78 ~~~~~pd~vIlID~pgFNlrlak~lk~~~~~--~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPFE~~~y~-----~ 150 (373)
T PF02684_consen 78 IKEEKPDVVILIDYPGFNLRLAKKLKKRGIP--IKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPFEPEFYK-----K 150 (373)
T ss_pred HHHcCCCEEEEeCCCCccHHHHHHHHHhCCC--ceEEEEECCceeeeCccHHHHHHHHHhheeECCcccHHHHh-----c
Confidence 356899999987744 333344444433221 13444443222222222333333445666665555555555 3
Q ss_pred hccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeE-EEEEee-ccc-CCCHHHHHHHHHHHHHHHHh
Q 012132 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLL-FAIINS-VSR-GKGQDLFLHSFYESLELIKE 301 (470)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-i~~vGr-l~~-~Kg~~~ll~a~~~l~~~l~~ 301 (470)
.| -+++.+.|+.-... .+..+ +...++.+ +++++.+ .+..|+ -.. .+.+..+++++.++.+
T Consensus 151 ~g---~~~~~VGHPl~d~~-~~~~~-------~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~---- 214 (373)
T PF02684_consen 151 HG---VPVTYVGHPLLDEV-KPEPD-------RAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK---- 214 (373)
T ss_pred cC---CCeEEECCcchhhh-ccCCC-------HHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 34 34677777753322 11111 34556666 7666654 455563 322 4456777888877765
Q ss_pred hcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhc
Q 012132 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
++|++++++..... ...+.+++.....+....+.. ...+-.+.|++||+.+..| |.+.+|++.+
T Consensus 215 ---~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~Al~ 278 (373)
T PF02684_consen 215 ---QRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS-------GTATLEAALL 278 (373)
T ss_pred ---hCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHHHh
Confidence 56999999887642 233445666655543322322 2357889999999999777 8999999999
Q ss_pred CCCEEecC-----------------CCCcceeeecCce--eeeecCCCCChHHHHHHHHHHHhCHHHHHHHH
Q 012132 382 QLPVLGTA-----------------AGGTTEIVVNGTT--GLLHPVGKEGITPLAKNIVKLATHVERRLTMG 434 (470)
Q Consensus 382 G~PvI~s~-----------------~~g~~e~v~~~~~--G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 434 (470)
|+|.|+.- .-+++.++-+.+. -++-+.. +++.+++++..+++|++.++...
T Consensus 279 g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~--~~~~i~~~~~~ll~~~~~~~~~~ 348 (373)
T PF02684_consen 279 GVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDA--TPENIAAELLELLENPEKRKKQK 348 (373)
T ss_pred CCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccC--CHHHHHHHHHHHhcCHHHHHHHH
Confidence 99998752 1122222221110 0122222 39999999999999987644433
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=107.36 Aligned_cols=92 Identities=17% Similarity=0.055 Sum_probs=67.9
Q ss_pred CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCC
Q 012132 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKE 411 (470)
Q Consensus 336 ~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~ 411 (470)
.++++|.+.++. ....+|..||++| .-|-..++.||+++|+|+|+....+ ..+.+...+.|...+..+.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I------~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVV------HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheee------ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 456799999996 4678899999999 3444689999999999999986554 2334445567777766533
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
+.+++.+++.++++++ .+++..+
T Consensus 358 ~~~~l~~al~~~l~~~-~~~~~~~ 380 (401)
T cd03784 358 TAERLAAALRRLLDPP-SRRRAAA 380 (401)
T ss_pred CHHHHHHHHHHHhCHH-HHHHHHH
Confidence 4899999999999854 3444333
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.2e-09 Score=99.81 Aligned_cols=198 Identities=15% Similarity=0.205 Sum_probs=114.4
Q ss_pred hhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCC-CeEEEEEeecc--cCCCHHHHHHHHHHHHHHHH
Q 012132 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGKGQDLFLHSFYESLELIK 300 (470)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~vGrl~--~~Kg~~~ll~a~~~l~~~l~ 300 (470)
+-|.++.++.++.|..-......... .++.+.+++|++.+ +++++.+-+-. .....+.+.+.++.+.+.
T Consensus 161 ~eg~~~~~i~~tG~~~iD~l~~~~~~------~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~-- 232 (365)
T TIGR03568 161 QMGEDPDRVFNVGSPGLDNILSLDLL------SKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL-- 232 (365)
T ss_pred HcCCCCCcEEEECCcHHHHHHhhhcc------CHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh--
Confidence 34777788888877543332211111 13567788888644 56555555433 233333444444433221
Q ss_pred hhcccCCceEEEEEeC-CCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHH
Q 012132 301 EKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 301 ~~~~~~~~~~l~ivG~-g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (470)
..++ +++.. +.+......+.++++..+ .++|.+.+.. .++..+++.||++|-.|. |.. .|
T Consensus 233 -----~~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------ggi-~E 295 (365)
T TIGR03568 233 -----NKNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAVIGNSS------SGI-IE 295 (365)
T ss_pred -----ccCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEEEEcCh------hHH-Hh
Confidence 0234 33322 112111234444444221 3579999964 889999999999995553 333 89
Q ss_pred HHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 378 AMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 378 Ama~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
|.++|+|+|+- ++-+|.+..|.+.+++. .| ++++.+++.+++ +++.+..+ ......|...+.++++.++
T Consensus 296 A~~lg~Pvv~l--~~R~e~~~~g~nvl~vg-~~--~~~I~~a~~~~~-~~~~~~~~-----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 296 APSFGVPTINI--GTRQKGRLRADSVIDVD-PD--KEEIVKAIEKLL-DPAFKKSL-----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred hhhcCCCEEee--cCCchhhhhcCeEEEeC-CC--HHHHHHHHHHHh-ChHHHHHH-----hhCCCCCCCChHHHHHHHh
Confidence 99999999954 56788887777777674 34 899999999954 44433322 1112336556666666553
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=94.93 Aligned_cols=277 Identities=15% Similarity=0.116 Sum_probs=160.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 141 (470)
|||++-....+ --.+...+++.|.++||+|.|.+...+. ..+.+...|++......
T Consensus 1 MkIwiDi~~p~---hvhfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPA---HVHFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCch---HHHHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHH
Confidence 57776554332 2378999999999999999999976543 34555566666544321
Q ss_pred -----hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHH
Q 012132 142 -----QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEY 216 (470)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 216 (470)
...+.++.+||++++..+......+..+ + .|.+....+.+.. ......++..+.+++........
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~l--g-----iP~I~f~D~e~a~---~~~~Lt~Pla~~i~~P~~~~~~~ 139 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEAARVAFGL--G-----IPSIVFNDTEHAI---AQNRLTLPLADVIITPEAIPKEF 139 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHh--C-----CCeEEEecCchhh---ccceeehhcCCeeECCcccCHHH
Confidence 1133355899999988755443233222 2 3444444432111 11223345666666655554443
Q ss_pred HHHhhhhhhccCCCceEEE-ecCCchhh----hhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC-----CH-
Q 012132 217 WKNRTRERLRIKMPDTYVV-HLGNSKEL----MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK-----GQ- 285 (470)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi-~ngvd~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K-----g~- 285 (470)
+. ++|.. . .+. +||++... |.|+ .++.+++|+++++++++ |..+.+ |.
T Consensus 140 ~~-----~~G~~-~--~i~~y~G~~E~ayl~~F~Pd----------~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~ 198 (335)
T PF04007_consen 140 LK-----RFGAK-N--QIRTYNGYKELAYLHPFKPD----------PEVLKELGLDDEPYIVV---RPEAWKASYDNGKK 198 (335)
T ss_pred HH-----hcCCc-C--CEEEECCeeeEEeecCCCCC----------hhHHHHcCCCCCCEEEE---EeccccCeeecCcc
Confidence 33 45544 2 344 77877532 4443 45778899876665543 444322 22
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
+.+-+.+..+ .+. .+. ++++....+ . +++.+++ ++.++...-+..+++..||++|
T Consensus 199 ~i~~~ii~~L----~~~----~~~-vV~ipr~~~----~----~~~~~~~----~~~i~~~~vd~~~Ll~~a~l~I---- 253 (335)
T PF04007_consen 199 SILPEIIEEL----EKY----GRN-VVIIPRYED----Q----RELFEKY----GVIIPPEPVDGLDLLYYADLVI---- 253 (335)
T ss_pred chHHHHHHHH----Hhh----Cce-EEEecCCcc----h----hhHHhcc----CccccCCCCCHHHHHHhcCEEE----
Confidence 2233333333 321 333 566655421 1 1222333 2555555557779999999999
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+| |....||...|+|.|.+..|. .-+.+ -+.|+++...| ++++.+.+.+...
T Consensus 254 --g~g-gTMa~EAA~LGtPaIs~~~g~~~~vd~~L--~~~Gll~~~~~--~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 254 --GGG-GTMAREAALLGTPAISCFPGKLLAVDKYL--IEKGLLYHSTD--PDEIVEYVRKNLG 309 (335)
T ss_pred --eCC-cHHHHHHHHhCCCEEEecCCcchhHHHHH--HHCCCeEecCC--HHHHHHHHHHhhh
Confidence 343 678889999999999876442 33333 24589999888 9998886666543
|
They are found in archaea and some bacteria and have no known function. |
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=103.28 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=86.1
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+.+.+++++|..... .++++++.+ ++..++++|.... + ...++|++.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~~-------~--------~~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNAA-------D--------PRPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCcc-------c--------ccCCCEEEeecC
Confidence 356788888876544 666776654 7789999977520 0 014689999987
Q ss_pred -CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCccee------eecCceeeeecCCCCChHHHHHHH
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI------VVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~------v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
.++.++++.||++|..+ --.++.||+++|+|+|+-...+..|. ++..+.|...+..+.+++.|.+.|
T Consensus 241 ~~~~~~~m~~ad~vIs~~------G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l 314 (318)
T PF13528_consen 241 TPDFAELMAAADLVISKG------GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFL 314 (318)
T ss_pred hHHHHHHHHhCCEEEECC------CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHH
Confidence 89999999999999443 23459999999999999887664443 444556666665554578888888
Q ss_pred HHH
Q 012132 421 VKL 423 (470)
Q Consensus 421 ~~l 423 (470)
+++
T Consensus 315 ~~~ 317 (318)
T PF13528_consen 315 ERL 317 (318)
T ss_pred hcC
Confidence 753
|
|
| >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-07 Score=86.56 Aligned_cols=339 Identities=17% Similarity=0.186 Sum_probs=191.1
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhCC-ceEEEEecCCCCCchhHHHhhhhhhhhccee-------eEe-----
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-------VIS----- 138 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 138 (470)
|.+|||++|...-|- ..-+..+++++.+.+ .+..|+......... . ....+...++. +..
T Consensus 1 m~~~Kv~~I~GTRPE---~iKmapli~~~~~~~~~~~~vi~TGQH~d~e-m---~~~~le~~~i~~pdy~L~i~~~~~tl 73 (383)
T COG0381 1 MKMLKVLTIFGTRPE---AIKMAPLVKALEKDPDFELIVIHTGQHRDYE-M---LDQVLELFGIRKPDYDLNIMKPGQTL 73 (383)
T ss_pred CCceEEEEEEecCHH---HHHHhHHHHHHHhCCCCceEEEEecccccHH-H---HHHHHHHhCCCCCCcchhccccCCCH
Confidence 567899999842210 145778899999886 666666533222111 0 11111111221 110
Q ss_pred -------cCChhhHHhhcCCcEEEEcccchhhhHHH--HhhhcCCccccceeeEEeeecccc-----chhhhhccccccc
Q 012132 139 -------AKGQETINTALKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVA 204 (470)
Q Consensus 139 -------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~~~~~~~~~ 204 (470)
......+....+||+|.+|.-....+... ++...+ |+ .|--.|.. +.....+. +.
T Consensus 74 ~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~I-----pV---~HvEAGlRt~~~~~PEE~NR~---l~ 142 (383)
T COG0381 74 GEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKI-----PV---GHVEAGLRTGDLYFPEEINRR---LT 142 (383)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCC-----ce---EEEecccccCCCCCcHHHHHH---HH
Confidence 11234666789999999987543333322 222222 22 23222211 11111221 22
Q ss_pred ceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHH-cCCCCCCeEEEEEeeccc-C
Q 012132 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSR-G 282 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~i~~vGrl~~-~ 282 (470)
..++....+.....++-..+-|++++++.|+.|.+-....... +... ........ ++...++.+++..-|-.. .
T Consensus 143 ~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~-~~~~---~~~~~~~~~~~~~~~~~iLvT~HRreN~~ 218 (383)
T COG0381 143 SHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTR-DRVL---EDSKILAKGLDDKDKKYILVTAHRRENVG 218 (383)
T ss_pred HHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHH-hhhc---cchhhHHhhhccccCcEEEEEcchhhccc
Confidence 2233323222222222223568899999999997633322211 1100 01111222 444445677777777644 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH-HhcCCCCcEEEeccc--CCHHHHHHhcCE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~-~~~~l~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
+++..+++++.++.+ +++++.++.--.. ...+++.. ..++-.++|+++.+. .+...+++.|-+
T Consensus 219 ~~~~~i~~al~~i~~-------~~~~~~viyp~H~-------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~ 284 (383)
T COG0381 219 EPLEEICEALREIAE-------EYPDVIVIYPVHP-------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL 284 (383)
T ss_pred ccHHHHHHHHHHHHH-------hCCCceEEEeCCC-------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE
Confidence 889999999988876 4467766654432 13344444 455655678888875 677888888866
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
.+--| |...=||-..|+||++-+ ...-+|.++.| +-.++.. + .+.+.+++.+++++++.+++|+...
T Consensus 285 iltDS-------GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~-~--~~~i~~~~~~ll~~~~~~~~m~~~~- 352 (383)
T COG0381 285 ILTDS-------GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGT-D--EENILDAATELLEDEEFYERMSNAK- 352 (383)
T ss_pred EEecC-------CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCc-c--HHHHHHHHHHHhhChHHHHHHhccc-
Confidence 66333 556779999999999876 45678877544 2234433 3 7999999999999999888886533
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
..|.-.+..+++.+++....
T Consensus 353 ----npYgdg~as~rIv~~l~~~~ 372 (383)
T COG0381 353 ----NPYGDGNASERIVEILLNYF 372 (383)
T ss_pred ----CCCcCcchHHHHHHHHHHHh
Confidence 34555556666666665543
|
|
| >PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=92.28 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------------ChhhHH--hhc
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------------GQETIN--TAL 149 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~~ 149 (470)
||.++++.+|+++|.++||+|++++........ .....++.+.... ....+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDD--------EEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG---------SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCccc--------ccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 677999999999999999999999965544211 1122344443211 112333 568
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---ch-----hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK-----LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
+||+||+|++... ++....+.. ...|++.++|+..... +. ......+...+.+++.|....+.+.
T Consensus 73 ~~Dvv~~~~~~~~-~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~--- 145 (160)
T PF13579_consen 73 RPDVVHAHSPTAG-LVAALARRR---RGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLR--- 145 (160)
T ss_dssp --SEEEEEHHHHH-HHHHHHHHH---HT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHH---
T ss_pred CCeEEEecccchh-HHHHHHHHc---cCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHH---
Confidence 9999999985433 233333211 1368899999853221 11 1123445677888888888866655
Q ss_pred hhhhccCCCceEEEecC
Q 012132 222 RERLRIKMPDTYVVHLG 238 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ng 238 (470)
.++++.+++.|||||
T Consensus 146 --~~g~~~~ri~vipnG 160 (160)
T PF13579_consen 146 --RYGVPPDRIHVIPNG 160 (160)
T ss_dssp --HH---GGGEEE----
T ss_pred --HhCCCCCcEEEeCcC
Confidence 367888999999998
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-07 Score=88.63 Aligned_cols=312 Identities=10% Similarity=0.066 Sum_probs=171.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe--------------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------- 138 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 138 (470)
...||.+++.+. .|..+..+|+++|+++.-++.+....++. +...|++...
T Consensus 225 ~~~kIfI~AGE~---SGDlhgA~Li~aLk~~~P~i~~~GvGG~~------------M~aaG~e~l~d~~eLsVmG~~EVL 289 (608)
T PRK01021 225 SNTSCFISAGEH---SGDTLGGNLLKEIKALYPDIHCFGVGGPQ------------MRAEGFHPLFNMEEFQVSGFWEVL 289 (608)
T ss_pred cCCeEEEEeccc---cHHHHHHHHHHHHHhcCCCcEEEEEccHH------------HHhCcCcccCChHHhhhhhHHHHH
Confidence 345888888665 34588899999999987788877644332 1112221110
Q ss_pred ---------cCChhhHHhhcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceee
Q 012132 139 ---------AKGQETINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMI 208 (470)
Q Consensus 139 ---------~~~~~~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (470)
.+.........+||++++-+... ...++..+++.. +..|+++.+--....|-..+..+.-+..|..++
T Consensus 290 ~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~G--i~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~ 367 (608)
T PRK01021 290 LALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRG--YKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLL 367 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcC--CCCCEEEEECccceeeCcchHHHHHHHhhhhee
Confidence 01112334568999999876443 333444443322 112454444322222223333334445566666
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEee-ccc-CCCH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINS-VSR-GKGQ 285 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vGr-l~~-~Kg~ 285 (470)
.-..-.++++ +.|+ +++.+.|+.-.. ..... .+++.|+++|++++. .+-+..|+ -.+ .+.+
T Consensus 368 IfPFE~~~y~-----~~gv---~v~yVGHPL~d~-i~~~~-------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rll 431 (608)
T PRK01021 368 ILPFEQNLFK-----DSPL---RTVYLGHPLVET-ISSFS-------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNL 431 (608)
T ss_pred cCccCHHHHH-----hcCC---CeEEECCcHHhh-cccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHH
Confidence 6666655555 3343 366777765222 11111 145678899997664 44455663 322 4566
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
+.+++|++. +.+. ++.++++..... ...+.+++..+..++ -.+.+... ++-.+++++||+.+..|
T Consensus 432 Pv~l~aa~~--~~l~------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~-~~~~~~m~aaD~aLaaS- 496 (608)
T PRK01021 432 TIQVQAFLA--SSLA------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPS-QFRYELMRECDCALAKC- 496 (608)
T ss_pred HHHHHHHHH--HHhc------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecC-cchHHHHHhcCeeeecC-
Confidence 777777761 1111 357777754321 234566666654331 02333321 13479999999999888
Q ss_pred CcccccchHHHHHHhcCCCEEecC-CC------------------CcceeeecCc--eeeeecCCCCChHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTA-AG------------------GTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~-~~------------------g~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll 424 (470)
|.+.+|++.+|+|.|+.- .+ +++.++.+.+ --++-..+|.+++.+++++ +++
T Consensus 497 ------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL 569 (608)
T PRK01021 497 ------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DIL 569 (608)
T ss_pred ------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHh
Confidence 899999999999998741 21 1122221111 0122101223499999996 888
Q ss_pred hCHHHHHHHHHHHHH
Q 012132 425 THVERRLTMGKRGYE 439 (470)
Q Consensus 425 ~~~~~~~~~~~~a~~ 439 (470)
.|++.++++.+...+
T Consensus 570 ~d~~~r~~~~~~l~~ 584 (608)
T PRK01021 570 KTSQSKEKQKDACRD 584 (608)
T ss_pred cCHHHHHHHHHHHHH
Confidence 888877777665544
|
|
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-07 Score=84.46 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCcEEEeccc-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce------eeecCceeeeecCCC
Q 012132 338 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGK 410 (470)
Q Consensus 338 ~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e------~v~~~~~G~l~~~~d 410 (470)
++++.+.++. +++.++|..||++|..+- ..++.||+++|+|+|.....+..| .+.+.+.|...+..+
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G------~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGG------FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCC------hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 4689999987 589999999999996553 357999999999999988766444 244556777777665
Q ss_pred CChHHHHHHHHHHHhCH
Q 012132 411 EGITPLAKNIVKLATHV 427 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~ 427 (470)
. ++.+++...+.|+
T Consensus 302 --~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 302 --L-RLLEAILDIRNMK 315 (321)
T ss_pred --H-HHHHHHHhccccc
Confidence 5 5555555555443
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-06 Score=80.38 Aligned_cols=304 Identities=14% Similarity=0.162 Sum_probs=148.1
Q ss_pred cccEEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCC
Q 012132 73 KSKLVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (470)
++++|++.+.... .++-.+++.+.... ...++++.+++..... .....+..++.....+.+....+.
T Consensus 12 ~~~~Ivf~~~~g~~~~dN~~~l~~~l~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~~~~A 79 (369)
T PF04464_consen 12 KKKKIVFESESGNKFSDNPKALFEYLIK-NYPDYKIYWIINKKSP-----------ELKPKGIKVVKFGSLKHIYYLARA 79 (369)
T ss_dssp EEEEEEEEBTTTTBS-HHHHHHHHHHHH-H-TTSEEEEEESSGGG---------------SS-EEEETTSHHHHHHHHHE
T ss_pred cCCEEEEEECCCCCCCCCHHHHHHHHHh-hCCCcEEEEEEcCchH-----------hhccCCceEEeecHHHHHHHHHhC
Confidence 4567888876432 24435555554441 2345788787744321 233456777777777777777778
Q ss_pred cEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh----------hhhcccccccceeeeehhhHHHHHHhh
Q 012132 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----------DYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
+++++.+......... .....+++..+|+....-+.. .........+.+++.|....+.+.+
T Consensus 80 k~~i~~~~~~~~~~~~------~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~-- 151 (369)
T PF04464_consen 80 KYIISDSYFPDLIYFK------KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK-- 151 (369)
T ss_dssp EEEEESS---T--TS---------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH--
T ss_pred cEEEECCCCCcccccc------cCCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH--
Confidence 8998884332211100 112257888889872211111 1223345667777777776655554
Q ss_pred hhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCH------HHHHHHHHHH
Q 012132 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ------DLFLHSFYES 295 (470)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~------~~ll~a~~~l 295 (470)
.++.+..+ ++..|.+....-...... .++.+++.++++.++.+|+++-........ ...++ +.++
T Consensus 152 --~f~~~~~~--i~~~G~PR~D~l~~~~~~----~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~~l 222 (369)
T PF04464_consen 152 --AFGYPEDK--ILVTGYPRNDYLFNKSKE----NRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FEKL 222 (369)
T ss_dssp --HTT--GGG--EEES--GGGHHHHHSTT-----HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HHHH
T ss_pred --HhccCcce--EEEeCCCeEhHHhccCHH----HHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HHHH
Confidence 66766665 445565444322222111 156788899999888899998544322211 11221 1222
Q ss_pred HHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 296 ~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
. .+ ..+++.+++-.. |......... ....++|.+.....++.+++..||++| ++ ++-++
T Consensus 223 ~-~~-----~~~~~~li~k~H------p~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~~aDiLI------TD-ySSi~ 281 (369)
T PF04464_consen 223 N-FL-----LKNNYVLIIKPH------PNMKKKFKDF--KEDNSNIIFVSDNEDIYDLLAAADILI------TD-YSSII 281 (369)
T ss_dssp H-HH-----HTTTEEEEE--S------HHHHTT------TT-TTTEEE-TT-S-HHHHHHT-SEEE------ES-S-THH
T ss_pred H-HH-----hCCCcEEEEEeC------chhhhchhhh--hccCCcEEECCCCCCHHHHHHhcCEEE------Ee-chhHH
Confidence 1 11 126888887665 2322211111 334568888887789999999999999 33 34589
Q ss_pred HHHHhcCCCEEec--CCCCc---cee---eecCceeeeecCCCCChHHHHHHHHHHHhCHHHH
Q 012132 376 IEAMAFQLPVLGT--AAGGT---TEI---VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430 (470)
Q Consensus 376 lEAma~G~PvI~s--~~~g~---~e~---v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 430 (470)
.|++.+++|||-. |.... +.. ..+...|.++. + .++|.++|...+++++..
T Consensus 282 fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~--~--~~eL~~~i~~~~~~~~~~ 340 (369)
T PF04464_consen 282 FDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY--N--FEELIEAIENIIENPDEY 340 (369)
T ss_dssp HHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES--S--HHHHHHHHTTHHHHHHHT
T ss_pred HHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC--C--HHHHHHHHHhhhhCCHHH
Confidence 9999999999954 33211 111 11223344443 3 899999999988765543
|
They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D. |
| >PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-07 Score=75.95 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=93.4
Q ss_pred ccEEEEEeec-cC--CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--Ch---h--
Q 012132 74 SKLVLLVSHE-LS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ---E-- 143 (470)
Q Consensus 74 ~~kIl~v~~~-~~--~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~-- 143 (470)
|+||+++.+. .| .||-|+++.+|+..|.++||+|+|.|........ .....|+.++..+ .. .
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeCCCCCCchHHH
Confidence 5799999987 33 3777999999999999999999999965443211 1112344443322 11 0
Q ss_pred ---------hH--Hh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc----------chhhhhccc
Q 012132 144 ---------TI--NT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------FKLDYVKHL 200 (470)
Q Consensus 144 ---------~~--~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----------~~~~~~~~~ 200 (470)
.+ .+ ..+.|+|+++....+.++....+. ++....+++..+|+..... ++.......
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~av 151 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAV 151 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHH
Confidence 11 11 135789998876644333333322 2222246777777653221 111222334
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCc
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd 240 (470)
...+..+++|..+.+++.+ +|+ ..+.++|++|.|
T Consensus 152 k~ad~lIaDs~~I~~y~~~----~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYIKE----RYG--RKKSTFIAYGAD 185 (185)
T ss_pred HhCCEEEEcCHHHHHHHHH----HcC--CCCcEEecCCCC
Confidence 5778899999999888887 444 466899999976
|
|
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-06 Score=79.58 Aligned_cols=160 Identities=15% Similarity=0.140 Sum_probs=101.6
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (470)
.+++.+..|..... ..+++.+.+.... -+.++++...+. + . ..-++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~~--------l~~~vi~~~~~~-~-----~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALAD--------LDVRVIVSLGGA-R-----D------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHhc--------CCcEEEEecccc-c-----c------ccccCCCceEEecCCC
Confidence 34555566665433 3444443333221 467777766541 0 0 1225678899988864
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
. ..++..||++|... --.++.||+.+|+|+|+-..+. ..+.+++-+.|...+....+.+.++++|.+++
T Consensus 294 ~-~~~l~~ad~vI~hG------G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 294 Q-LELLPRADAVIHHG------GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred H-HHHhhhcCEEEecC------CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHh
Confidence 4 45999999999554 3568999999999999876542 44556666788888754444999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 425 THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
+|+..++...+ .++...+.-..+++++.++++..
T Consensus 367 ~~~~~~~~~~~-~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 367 ADDSYRRAAER-LAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred cCHHHHHHHHH-HHHHhhhcccHHHHHHHHHHHHh
Confidence 99886655443 33334443444445544444433
|
|
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-06 Score=81.91 Aligned_cols=270 Identities=13% Similarity=0.084 Sum_probs=136.6
Q ss_pred hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeee-cc-c----cchhhhhcccccc-cceeeeehhhHH
Q 012132 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM-RG-H----YFKLDYVKHLPLV-AGAMIDSHVTAE 215 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~~-~----~~~~~~~~~~~~~-~~~~~~s~~~~~ 215 (470)
.......+||+|+++.-....+.......... .| +.++|+- +. . ......+..+..+ +-+++.+....+
T Consensus 60 ~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~---ip-v~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~ 135 (346)
T PF02350_consen 60 ADVLEREKPDAVLVLGDRNEALAAALAAFYLN---IP-VAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARE 135 (346)
T ss_dssp HHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT----E-EEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHH
T ss_pred HHHHHhcCCCEEEEEcCCchHHHHHHHHHHhC---CC-EEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHH
Confidence 35556789999999875543333332222111 34 3344432 10 1 1122222333222 233444444433
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHH-HHHc-CCCCCCeEEEEEeecccC---CCHHHHHH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV-RESL-GVRNEDLLFAIINSVSRG---KGQDLFLH 290 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~-r~~~-~~~~~~~~i~~vGrl~~~---Kg~~~ll~ 290 (470)
.+. +.|.++.++.++.|..-.......+.. .+.. ...+ ....+++++++.-|.+.. .....+.+
T Consensus 136 ~L~-----~~G~~~~rI~~vG~~~~D~l~~~~~~~------~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~ 204 (346)
T PF02350_consen 136 RLL-----QEGEPPERIFVVGNPGIDALLQNKEEI------EEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILE 204 (346)
T ss_dssp HHH-----HTT--GGGEEE---HHHHHHHHHHHTT------CC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHH
T ss_pred HHH-----hcCCCCCeEEEEChHHHHHHHHhHHHH------hhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHH
Confidence 333 458889999999876533332211110 0011 1111 114566777666554332 34556666
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~ 368 (470)
++..+.+. +++.+++.....+ .....+.+..+++ +++++.... .++..+++.|+++|--|
T Consensus 205 ~l~~L~~~--------~~~~vi~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS---- 266 (346)
T PF02350_consen 205 ALKALAER--------QNVPVIFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS---- 266 (346)
T ss_dssp HHHHHHHH--------TTEEEEEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS----
T ss_pred HHHHHHhc--------CCCcEEEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC----
Confidence 66666542 5788888776321 4566666666655 388888764 78899999999999555
Q ss_pred cccchHHH-HHHhcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Q 012132 369 ECFGRITI-EAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 369 E~~g~~~l-EAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 446 (470)
| .+. ||..+|+|+|.-+ .|.-.+.+..+.+ .++. .| .+++.++|.+++++.+.+..+.. ...-|.
T Consensus 267 ---s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~n-vlv~-~~--~~~I~~ai~~~l~~~~~~~~~~~-----~~npYg 333 (346)
T PF02350_consen 267 ---S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSN-VLVG-TD--PEAIIQAIEKALSDKDFYRKLKN-----RPNPYG 333 (346)
T ss_dssp ---H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSE-EEET-SS--HHHHHHHHHHHHH-HHHHHHHHC-----S--TT-
T ss_pred ---c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcce-EEeC-CC--HHHHHHHHHHHHhChHHHHhhcc-----CCCCCC
Confidence 3 466 9999999999985 4555666655544 4455 45 99999999999988554444321 123466
Q ss_pred hhHHHHHHHHHH
Q 012132 447 EHHMAERIAVVL 458 (470)
Q Consensus 447 ~~~~~~~~~~~~ 458 (470)
-.+.++++.+++
T Consensus 334 dG~as~rI~~~L 345 (346)
T PF02350_consen 334 DGNASERIVEIL 345 (346)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCcHHHHHHHhh
Confidence 666677766655
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=70.73 Aligned_cols=293 Identities=17% Similarity=0.125 Sum_probs=153.5
Q ss_pred cEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 75 KLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
|||+|++....- |+| -.+...||++|.++|..+..++.+.... . +.+.+...++....... ..+..++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~---~---~~~~~~~f~~~~~~~~n---~ik~~k~d 71 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA---I---IHKVYEGFKVLEGRGNN---LIKEEKFD 71 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh---h---hhhhhhhccceeeeccc---ccccccCC
Confidence 799999987654 555 5789999999999998888887443211 1 11111112222222222 55678999
Q ss_pred EEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCce
Q 012132 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 232 (470)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i 232 (470)
+++..+-....-....++.. ...+.+. +.+.....+. ..+.+ .... .+ -.+.++..+.+.
T Consensus 72 ~lI~Dsygl~~dd~k~ik~e---~~~k~l~-fDd~~~~~~~--------d~d~i---vN~~----~~-a~~~y~~v~~k~ 131 (318)
T COG3980 72 LLIFDSYGLNADDFKLIKEE---AGSKILI-FDDENAKSFK--------DNDLI---VNAI----LN-ANDYYGLVPNKT 131 (318)
T ss_pred EEEEeccCCCHHHHHHHHHH---hCCcEEE-ecCCCccchh--------hhHhh---hhhh----hc-chhhccccCcce
Confidence 99987643322222222210 1122222 2222222111 00000 1111 11 111344444443
Q ss_pred EEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEE
Q 012132 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312 (470)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ 312 (470)
-++-|.+.-...+.... .|++.+++ +-+-+++..|. +..|| +.++.++.+.+ .++-+.
T Consensus 132 -~~~lGp~y~~lr~eF~~-----~r~~~~~r----~~r~ilI~lGG-sDpk~--lt~kvl~~L~~---------~~~nl~ 189 (318)
T COG3980 132 -RYYLGPGYAPLRPEFYA-----LREENTER----PKRDILITLGG-SDPKN--LTLKVLAELEQ---------KNVNLH 189 (318)
T ss_pred -EEEecCCceeccHHHHH-----hHHHHhhc----chheEEEEccC-CChhh--hHHHHHHHhhc---------cCeeEE
Confidence 34456655544333211 12333332 23334555664 33454 45566666533 233333
Q ss_pred -EEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec---
Q 012132 313 -IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT--- 388 (470)
Q Consensus 313 -ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s--- 388 (470)
++|++. |....+++.+++. +++.+.-..++|+++|..||+.+... |.++.||...|+|.++-
T Consensus 190 iV~gs~~----p~l~~l~k~~~~~---~~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l~~a 255 (318)
T COG3980 190 IVVGSSN----PTLKNLRKRAEKY---PNINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVLPLA 255 (318)
T ss_pred EEecCCC----cchhHHHHHHhhC---CCeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEEeee
Confidence 345543 3556666666655 68999888899999999999988443 78999999999994332
Q ss_pred -CCCCcceeeecCceeeeecC---CCCChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 389 -AAGGTTEIVVNGTTGLLHPV---GKEGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 389 -~~~g~~e~v~~~~~G~l~~~---~d~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
+.-....... ..|..... .. .......+.++.+|...+..+...
T Consensus 256 ~NQ~~~a~~f~--~lg~~~~l~~~l~--~~~~~~~~~~i~~d~~~rk~l~~~ 303 (318)
T COG3980 256 ENQIATAKEFE--ALGIIKQLGYHLK--DLAKDYEILQIQKDYARRKNLSFG 303 (318)
T ss_pred ccHHHHHHHHH--hcCchhhccCCCc--hHHHHHHHHHhhhCHHHhhhhhhc
Confidence 2111111111 11222211 11 467777788888888877665443
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=85.96 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=79.7
Q ss_pred CCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCC
Q 012132 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEG 412 (470)
Q Consensus 337 l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~ 412 (470)
++++|.+.++... .+++..||++|..+- ..++.||+++|+|+|+....+ ..+.+.+.+.|......+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG------~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG------MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC------chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 4578999998754 488999999995442 358999999999999976443 22334455577777655444
Q ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
.++++++|.++++|++.++++.+- ++.+...-..+..++.+++++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 799999999999998866665333 333444456666666665543
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-06 Score=73.34 Aligned_cols=170 Identities=9% Similarity=0.034 Sum_probs=116.2
Q ss_pred CCeEEEEEee-cccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGr-l~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+++.|+ +|+ -++.-++..+++++.+.. ..++++++-=+-+.+...|.+++++.++++--.++++.+-..
T Consensus 145 ~~~tIl-vGNSgd~SN~Hie~L~~l~~~~---------~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~ 214 (322)
T PRK02797 145 GKMTIL-VGNSGDRSNRHIEALRALHQQF---------GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK 214 (322)
T ss_pred CceEEE-EeCCCCCcccHHHHHHHHHHHh---------CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh
Confidence 445554 555 467778888888887653 267888776554334456999999999998765788877642
Q ss_pred ---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC-CCCcceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 ---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~-~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
++..++++.||+.++.-. +.+|.|+.++ .+..|+||+.++ ++-..++.+.+ .-++++.++-|...+.
T Consensus 215 l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~------ 285 (322)
T PRK02797 215 LPFDDYLALLRQCDLGYFIFA-RQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQG-LPVLFTGDDLDEDIVR------ 285 (322)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCC-CeEEecCCcccHHHHH------
Confidence 788999999999998766 5899997665 899999999885 55556655433 2233454431122221
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+..+++....++.+. |+.+++.+.|.++++....
T Consensus 286 ----e~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 286 ----EAQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ----HHHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhC
Confidence 223334444455453 9999999999999987654
|
|
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1e-05 Score=76.32 Aligned_cols=250 Identities=15% Similarity=0.054 Sum_probs=125.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcce-eeEe-cCCh-----hhHH
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVIS-AKGQ-----ETIN 146 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----~~~~ 146 (470)
+|||++++.+. .|..+...|+++|++ ++.++...++.- .+....+. .+.-.|+ .+++ .+.. +...
T Consensus 1 ~~~i~i~aGE~---SGD~~ga~l~~~l~~---~~~~~G~GG~~m-~~~~~~~~-~lsv~G~~evl~~~~~~~~~~~~~~~ 72 (347)
T PRK14089 1 MMKILVSALEP---SANLHLKELLKNLPK---DYELIGIFDKSL-GNPLYDSR-EFSIMGFVDVLPKLFFAKKAIKEMVE 72 (347)
T ss_pred CcEEEEEeccc---cHHHHHHHHHHHHhc---CCEEEEEechHH-HHhcCChH-HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899888665 345788889999987 566665433221 00000000 0000110 0000 0000 0111
Q ss_pred hhcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhh
Q 012132 147 TALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (470)
...+||++++-+... ...+...+++..+. .|+++++--....|-..+..+..+..+...+....-.+ .|
T Consensus 73 ~~~~pd~~i~iD~p~Fnl~lak~~k~~~~~--i~viyyi~PqvWAWr~~R~~~i~k~~d~vl~ifPFE~~--------~y 142 (347)
T PRK14089 73 LAKQADKVLLMDSSSFNIPLAKKIKKAYPK--KEIIYYILPQVWAWKKGRAKILEKYCDFLASILPFEVQ--------FY 142 (347)
T ss_pred HhcCCCEEEEeCCCCCCHHHHHHHHhcCCC--CCEEEEECccceeeCcchHHHHHHHHhhhhccCCCCHH--------Hh
Confidence 237999999876443 34345544443222 34544443222222222333333333433333221111 22
Q ss_pred ccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeeccc--CCCHHHHHHHHHHHHHHHHhhc
Q 012132 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKK 303 (470)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~--~Kg~~~ll~a~~~l~~~l~~~~ 303 (470)
| .+++++.|++-... ... +.. +++++.+.++.|+-.. .+.+..+++++.++.+
T Consensus 143 g---~~~~~VGhPl~d~~-~~~-------------~~~--~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~------ 197 (347)
T PRK14089 143 Q---SKATYVGHPLLDEI-KEF-------------KKD--LDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG------ 197 (347)
T ss_pred C---CCCEEECCcHHHhh-hhh-------------hhh--cCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh------
Confidence 2 34567777753321 110 011 2234455556664321 2445556666666543
Q ss_pred ccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC
Q 012132 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (470)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (470)
+ ...+++.|.. ..+.+++...+. ..+.+.+ +..++|+.||+.+..| |.+.+|++.+|+
T Consensus 198 -~--~~~~~i~~a~------~~~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~ 255 (347)
T PRK14089 198 -K--EKILVVPSFF------KGKDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGT 255 (347)
T ss_pred -c--CcEEEEeCCC------cHHHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCC
Confidence 2 2677777764 124555554432 2344543 6788999999999777 788889999999
Q ss_pred CEEec
Q 012132 384 PVLGT 388 (470)
Q Consensus 384 PvI~s 388 (470)
|.|..
T Consensus 256 P~Vv~ 260 (347)
T PRK14089 256 PFVLA 260 (347)
T ss_pred CEEEE
Confidence 99975
|
|
| >COG4641 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.1e-06 Score=77.05 Aligned_cols=324 Identities=13% Similarity=0.057 Sum_probs=180.1
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceee-EecCC----hhhHHhhcCCcEEEEcccc-
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG----QETINTALKADLIVLNTAV- 160 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~DiV~~~~~~- 160 (470)
+|...+..-+.++|..+||+|..+-+....... ........+... +.... .....+.+++|+|+.....
T Consensus 14 ~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~ 88 (373)
T COG4641 14 NGSAEYYRGLLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDD 88 (373)
T ss_pred CCchhhHHHHHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccc
Confidence 455678888999999999999998754332110 011111122211 11111 1234467999999876533
Q ss_pred -----hhhhHHHHhhhcCCccccceeeEEeeecccc--chhhhhccc-----ccccceeeeehhhHHHHHHhhhhhhccC
Q 012132 161 -----AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FKLDYVKHL-----PLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (470)
Q Consensus 161 -----~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--~~~~~~~~~-----~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (470)
....+..+++. ...|+++|.-+..... +.......+ -..+.+++..... ....+.+. .-
T Consensus 89 ~~~~~~~~~~~a~l~~----~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l---~~~~yyq~--~~ 159 (373)
T COG4641 89 QPDEESTIDLWAWLKR----KCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGL---VANKYYQE--GG 159 (373)
T ss_pred cccceehHHHHHHhhc----CCcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchH---HHHHHHHh--hc
Confidence 11111222221 2234444433321111 111111111 1111111111111 12222111 12
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccC-C
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV-P 307 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~-~ 307 (470)
..++..++.++|.+.|.+.+... .-.--+.++|.-.+. ..+..+++.-.-.. +. -
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-----r~e~~ke~~~~ps~---kl~v 215 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-----RVEEIKEFFVEPSF---KLMV 215 (373)
T ss_pred ccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-----HHHHHHHHhhccch---hhhc
Confidence 45688999999999988765221 112346778865443 22333322110000 00 1
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCc-ccc---cchHHHHHHh
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAW-GEC---FGRITIEAMA 380 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~-~E~---~g~~~lEAma 380 (470)
+-++.+.|... ...+.. -.-.+++.+.|+. ..+...++..|+.+.-++.. .++ +.+-+.|+|+
T Consensus 216 ~rr~~~~g~~y------~~~~~~----~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiag 285 (373)
T COG4641 216 DRRFYVLGPRY------PDDIWG----RTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAG 285 (373)
T ss_pred cceeeecCCcc------chhhhc----ccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhh
Confidence 24556666541 111110 0112355566652 67788888889888654420 122 3678999999
Q ss_pred cCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 381 FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
||.|.|++...++...+.+|+.=+++. | .+++.+.+..++..++.++++++.+++++...|+-+.-+..+.+....
T Consensus 286 c~~~liT~~~~~~e~~f~pgk~~iv~~--d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 286 CGGFLITDYWKDLEKFFKPGKDIIVYQ--D--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred cCCccccccHHHHHHhcCCchheEEec--C--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999888888776534433 4 899999999999999999999999999999989988888777777666
Q ss_pred HH
Q 012132 461 VL 462 (470)
Q Consensus 461 ~l 462 (470)
+.
T Consensus 362 I~ 363 (373)
T COG4641 362 IN 363 (373)
T ss_pred HH
Confidence 43
|
|
| >COG1817 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-05 Score=66.86 Aligned_cols=271 Identities=13% Similarity=0.093 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------------ChhhHHhhcC
Q 012132 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------------GQETINTALK 150 (470)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 150 (470)
.++..++...|.++||+|.+-|...+. +.+.+...|++..... ...++....+
T Consensus 13 vhfFk~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~k 84 (346)
T COG1817 13 VHFFKNLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFK 84 (346)
T ss_pred hhHHHHHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 378999999999999999998866554 3555555666553322 1224445689
Q ss_pred CcEEEE-cccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCC
Q 012132 151 ADLIVL-NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 229 (470)
Q Consensus 151 ~DiV~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 229 (470)
||+.+. |++.... ..+..++ +.+....+-+.. ..-...++..+.++.........+. .+|..+
T Consensus 85 pdv~i~~~s~~l~r---vafgLg~-----psIi~~D~ehA~---~qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p 148 (346)
T COG1817 85 PDVAIGKHSPELPR---VAFGLGI-----PSIIFVDNEHAE---AQNKLTLPLADVIITPEAIDEEELL-----DFGADP 148 (346)
T ss_pred CceEeecCCcchhh---HHhhcCC-----ceEEecCChhHH---HHhhcchhhhhheecccccchHHHH-----HhCCCc
Confidence 999987 4333222 1122222 333322221111 1123334555556555554433322 456554
Q ss_pred CceEEEecCCch----hhhhHhhhHHHHHHHHHHHHHHcCCCCCC-eEEEEEe-----ecccCCCHHHHHHHHHHHHHHH
Q 012132 230 PDTYVVHLGNSK----ELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIIN-----SVSRGKGQDLFLHSFYESLELI 299 (470)
Q Consensus 230 ~~i~vi~ngvd~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~vG-----rl~~~Kg~~~ll~a~~~l~~~l 299 (470)
.+ .+-+||+.. ..|.|+ .++-+++|+..+. ++++=.- -....++++.+.+++..+.
T Consensus 149 ~~-i~~~~giae~~~v~~f~pd----------~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~--- 214 (346)
T COG1817 149 NK-ISGYNGIAELANVYGFVPD----------PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELK--- 214 (346)
T ss_pred cc-eecccceeEEeecccCCCC----------HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHH---
Confidence 44 233444432 124443 3467789998764 4333111 1223456666666666652
Q ss_pred HhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 300 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 300 ~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
+.-.+++-.. ...++..+.+ ++++..-...|-.+++--|++++ .+ -|.-.-||.
T Consensus 215 --------k~giV~ipr~--------~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvi------g~-ggTMarEaA 268 (346)
T COG1817 215 --------KYGIVLIPRE--------KEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVI------GA-GGTMAREAA 268 (346)
T ss_pred --------hCcEEEecCc--------hhHHHHHhhh---ccccCCcccccHHHHHhhhheee------cC-CchHHHHHH
Confidence 2335555443 2223333333 23333334456566788888887 22 266678999
Q ss_pred hcCCCEEecCCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 380 AFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 380 a~G~PvI~s~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
..|+|.|.+.-| +..+.. -+.|.++...| +.+..+...+++.++.
T Consensus 269 lLGtpaIs~~pGkll~vdk~l--ie~G~~~~s~~--~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 269 LLGTPAISCYPGKLLAVDKYL--IEKGLLYHSTD--EIAIVEYAVRNLKYRR 316 (346)
T ss_pred HhCCceEEecCCccccccHHH--HhcCceeecCC--HHHHHHHHHHHhhchh
Confidence 999999999844 233333 25789999888 6676676667666553
|
|
| >PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00041 Score=63.66 Aligned_cols=269 Identities=10% Similarity=0.020 Sum_probs=146.7
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh----hh----hc-ccccccceeeeehhhHHHH
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----DY----VK-HLPLVAGAMIDSHVTAEYW 217 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~----~~----~~-~~~~~~~~~~~s~~~~~~~ 217 (470)
+..+.+-+++|..........++..+++ ..++.|.+.+..-..... .. ++ ...++..++ ....--.++
T Consensus 75 ~~~r~~kff~HGqFn~~lwlaLl~g~~~--~~k~~WhIWGaDLYe~~~~~k~rlfy~lRr~aq~rvg~V~-at~GDl~~~ 151 (360)
T PF07429_consen 75 KADRADKFFLHGQFNPWLWLALLFGKIK--LKKCYWHIWGADLYEDSRSLKFRLFYFLRRLAQKRVGHVF-ATRGDLAYF 151 (360)
T ss_pred hhCccceEEEeccCcHHHHHHHHcCCcc--ccceEEEEeCchhhccccccchhHHHHHHHHHHhhcCeEE-EEcchHHHH
Confidence 3468889999986643333333332222 245666666532111111 11 11 112333333 233333444
Q ss_pred HHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEee-cccCCCHHHHHHHHHHHH
Q 012132 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS-VSRGKGQDLFLHSFYESL 296 (470)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGr-l~~~Kg~~~ll~a~~~l~ 296 (470)
++ +++..+......|+-++......... ....++..|+ +|+ -++.-++-.+++++.+..
T Consensus 152 ~q----~~~~~~~~~lyfPt~m~~~~~~~~~~---------------~~~~~~ltIL-vGNSgd~sNnHieaL~~L~~~~ 211 (360)
T PF07429_consen 152 QQ----RYPRVPASLLYFPTRMDPALTLSEKN---------------KKNKGKLTIL-VGNSGDPSNNHIEALEALKQQF 211 (360)
T ss_pred HH----HcCCCCceEEEcCCCCchhhhccccc---------------cCCCCceEEE-EcCCCCCCccHHHHHHHHHHhc
Confidence 44 44433334555555555543221110 1113445554 554 467778888888776542
Q ss_pred HHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-c--cCCHHHHHHhcCEEEEccCCcccccch
Q 012132 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGR 373 (470)
Q Consensus 297 ~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~--~~~~~~~~~~aDv~v~pS~~~~E~~g~ 373 (470)
..++++++-=+-+.....|.+++++.++++--.+++..+- + -+|..++++.||+.+++.. +.+|.|+
T Consensus 212 ---------~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~-RQQgiGn 281 (360)
T PF07429_consen 212 ---------GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHN-RQQGIGN 281 (360)
T ss_pred ---------CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeec-hhhhHhH
Confidence 2567766643322222358888888888875556787665 3 2888999999999999987 6899997
Q ss_pred HHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 374 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 374 ~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
.++ .+.+|+||+.+.....-..+.+...-+++..++-+...+.++=.++.. .-++.+ .|...+..+.
T Consensus 282 I~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~----------~dk~~i--aFf~pny~~~ 348 (360)
T PF07429_consen 282 ICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN----------VDKQQI--AFFAPNYLQG 348 (360)
T ss_pred HHH-HHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh----------Ccccce--eeeCCchHHH
Confidence 655 999999999987655444443332234444333334444444333332 111111 2666777777
Q ss_pred HHHHHHHH
Q 012132 454 IAVVLKEV 461 (470)
Q Consensus 454 ~~~~~~~~ 461 (470)
|...+...
T Consensus 349 w~~~l~~~ 356 (360)
T PF07429_consen 349 WRQALRLA 356 (360)
T ss_pred HHHHHHHH
Confidence 76666544
|
This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00013 Score=71.09 Aligned_cols=346 Identities=14% Similarity=0.120 Sum_probs=194.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee-----EecCChhhHH
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISAKGQETIN 146 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 146 (470)
.+.+|..|++++...-. .++.+-.-++.++ .++|.+++........ +..++...+-.+ ++........
T Consensus 581 ~rlrIGYvSsDFgnHp~-Shlmqsv~gmHdr~kveVfcYals~~d~t~-----fR~kv~~e~ehf~Dls~i~~~kiA~~I 654 (966)
T KOG4626|consen 581 GRLRIGYVSSDFGNHPT-SHLMQSVPGMHDRSKVEVFCYALSVNDGTN-----FRDKVMKEAEHFVDLSQIPCNKIADKI 654 (966)
T ss_pred CceEEEeecccccCCch-HHHhccCcCcCCccceEEEEEEeecCCCch-----HHHHHHhhccceeehhcCChHHHHHHH
Confidence 56799999999843221 2333334444443 3566666532222111 122222222222 3334444555
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhc
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (470)
...+++|.+--+.....--.-.+. ..| .|+-..+-++-+ .......+.+++++.+.--.+.+...+++-
T Consensus 655 ~qD~I~ILvnlnGyTkgarneifA-lrP---APIQv~wlGyPg-------TtGa~~mDYiITDs~tsPl~~a~~ysEkLv 723 (966)
T KOG4626|consen 655 RQDKIHILVNLNGYTKGARNEIFA-LRP---APIQVMWLGYPG-------TTGATFMDYIITDSVTSPLELAQQYSEKLV 723 (966)
T ss_pred hhcCceEEEeccccccccccceee-ccC---CceeEEeecCCC-------CCCCceeeEEeecccCChHHHHHHHHHHHh
Confidence 667788777554332111000000 001 122222222111 112345677888877766555555444443
Q ss_pred cCCCceEEEecCCchh--hhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcc
Q 012132 227 IKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKL 304 (470)
Q Consensus 227 ~~~~~i~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~ 304 (470)
. .+....|...-... ...|.. .-.|..+++|++.+++..+..+ +|=-...++.+.++++
T Consensus 724 ~-lPh~ffi~d~~qk~~~~~dpn~---------kP~r~~y~Lp~d~vvf~~FNqL--yKidP~~l~~W~~ILk------- 784 (966)
T KOG4626|consen 724 Y-LPHCFFIGDHKQKNQDVLDPNN---------KPTRSQYGLPEDAVVFCNFNQL--YKIDPSTLQMWANILK------- 784 (966)
T ss_pred h-CCceEEecCcccccccccCCCC---------CCCCCCCCCCCCeEEEeechhh--hcCCHHHHHHHHHHHH-------
Confidence 2 23344444332211 111111 1257789999898877666654 4555678888888876
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhc
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (470)
+.|+..|++.--..- -++.++..++++|+ +++|.|..-. +|=..-++.+|+++-+-. ..| -.+-+|.+.+
T Consensus 785 ~VPnS~LwllrfPa~----ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTpl--cnG-hTTg~dvLw~ 857 (966)
T KOG4626|consen 785 RVPNSVLWLLRFPAV----GEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPL--CNG-HTTGMDVLWA 857 (966)
T ss_pred hCCcceeEEEecccc----chHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcC--cCC-cccchhhhcc
Confidence 569988888765321 25788999999999 4678887742 555566788999886544 222 3566799999
Q ss_pred CCCEEecCCCCcce-----eeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HHcChhHHHHHH
Q 012132 382 QLPVLGTAAGGTTE-----IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK--EIFQEHHMAERI 454 (470)
Q Consensus 382 G~PvI~s~~~g~~e-----~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~--~~fs~~~~~~~~ 454 (470)
|+|+|+-...-... .+..-+.|-++..+ -++..+.-.+|-.|.+..+.+...-++.-. -.|+-..++..+
T Consensus 858 GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~---~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~L 934 (966)
T KOG4626|consen 858 GVPMVTMPGETLASRVAASLLTALGLGHLIAKN---REEYVQIAVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGL 934 (966)
T ss_pred CCceeecccHHHHHHHHHHHHHHcccHHHHhhh---HHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHH
Confidence 99999753211110 11111233333332 678888888888888877777666554332 248899999999
Q ss_pred HHHHHHHHHh
Q 012132 455 AVVLKEVLKK 464 (470)
Q Consensus 455 ~~~~~~~l~~ 464 (470)
+++|.+...+
T Consensus 935 E~~y~~MW~~ 944 (966)
T KOG4626|consen 935 ERLYLQMWKK 944 (966)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >COG4671 Predicted glycosyl transferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00011 Score=66.89 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=85.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+...+++.+|. ..-|-+++-.++ +....+.+ .+..-++|.|..++. ...+.+...+. -.++|++..+.
T Consensus 218 E~~~Ilvs~GG--G~dG~eLi~~~l-~A~~~l~~----l~~~~~ivtGP~MP~--~~r~~l~~~A~---~~p~i~I~~f~ 285 (400)
T COG4671 218 EGFDILVSVGG--GADGAELIETAL-AAAQLLAG----LNHKWLIVTGPFMPE--AQRQKLLASAP---KRPHISIFEFR 285 (400)
T ss_pred ccceEEEecCC--ChhhHHHHHHHH-HHhhhCCC----CCcceEEEeCCCCCH--HHHHHHHHhcc---cCCCeEEEEhh
Confidence 45677777773 344544444333 33222211 011246777776543 23444444443 33689999999
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcc-eeeec----Cceee--eecCCCCChHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN----GTTGL--LHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~-e~v~~----~~~G~--l~~~~d~~~~~la~~i 420 (470)
+++..+++.|+..|.-+ -=+++.|-+++|||.+.-....-+ |.... .+-|+ +..+.+.+++.|+++|
T Consensus 286 ~~~~~ll~gA~~vVSm~------GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al 359 (400)
T COG4671 286 NDFESLLAGARLVVSMG------GYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADAL 359 (400)
T ss_pred hhHHHHHHhhheeeecc------cchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHH
Confidence 99999999999999333 236899999999998876543222 22110 12222 2334444589999999
Q ss_pred HHHHhCH
Q 012132 421 VKLATHV 427 (470)
Q Consensus 421 ~~ll~~~ 427 (470)
..+++.|
T Consensus 360 ~~~l~~P 366 (400)
T COG4671 360 KAALARP 366 (400)
T ss_pred HhcccCC
Confidence 9998743
|
|
| >KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.3e-05 Score=69.06 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc----ceeeecC-ceeeeec-----CCCCChHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNG-TTGLLHP-----VGKEGITPLA 417 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~----~e~v~~~-~~G~l~~-----~~d~~~~~la 417 (470)
-|..++.+.|.+.|+||. +|++|.+..|.-.+|+|-|+|+..|. .|.|.+. ..|+.+- ..|+++++|+
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~ 569 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLA 569 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHH
Confidence 467788999999999999 99999999999999999999998774 4445442 3454432 2233477788
Q ss_pred HHHHHHHhCHHHHHHHHH-HHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 418 KNIVKLATHVERRLTMGK-RGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 418 ~~i~~ll~~~~~~~~~~~-~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+-|...... ..|+++.+ +.-++.....+|..+...|.+.=.-.+
T Consensus 570 ~~m~~F~~q-sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 570 SFMYEFCKQ-SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHHH-HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 877777654 33444444 445667777899998887776544444
|
|
| >PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.1e-06 Score=66.61 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=61.6
Q ss_pred EEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------Ch
Q 012132 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------GQ 142 (470)
Q Consensus 76 kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 142 (470)
|||+++... +.+..++++.|.++||||++++...+... .....++.++... ..
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~~~---------~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDYEK---------YEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCchh---------hhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 688888755 35789999999999999999997544311 1112333333222 23
Q ss_pred hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeee
Q 012132 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 187 (470)
.++.+..+||+||+|.+.....+..+.+.... .+|++++.|+.
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~--~~~~i~~~hg~ 109 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLK--NKKVIYTVHGS 109 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHHHcC--CCCEEEEecCC
Confidence 45566789999999997654333433332221 14788999964
|
|
| >PRK10017 colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0062 Score=59.49 Aligned_cols=329 Identities=13% Similarity=0.077 Sum_probs=158.8
Q ss_pred cEEEEEeeccC-CCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHH---------------Hh-------hhhhh
Q 012132 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVI---------------YS-------LEHKM 129 (470)
Q Consensus 75 ~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~---------------~~-------~~~~~ 129 (470)
|||+++..+.. ..|.+-.+..++..|++.. .+++|++..+........ +. .....
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 68999988754 5777899999999999875 678888865544220000 00 00000
Q ss_pred h-------------hcceee-Eec--CChhhHHhhcCCcEEEEcccch-----h--hhHHHHhhhcCCccccceeeEEee
Q 012132 130 W-------------DRGVQV-ISA--KGQETINTALKADLIVLNTAVA-----G--KWLDAVLKEDVPRVLPNVLWWIHE 186 (470)
Q Consensus 130 ~-------------~~~~~~-~~~--~~~~~~~~~~~~DiV~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~h~ 186 (470)
. ..|..- ... .....+..-.+.|+++.-.... + .+........ ..+|++.+-++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l---~gkpv~l~gqs 157 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFM---AKKPLYMIGHS 157 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHH---cCCCEEEECCc
Confidence 0 000000 000 0001122345789998754211 0 0111111111 22466666666
Q ss_pred eccccchhh----hhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHH-HHHHHHHHHH
Q 012132 187 MRGHYFKLD----YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-AKRVLREHVR 261 (470)
Q Consensus 187 ~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~~~r 261 (470)
..+ +-... ....++.++. ++.-... ...+.+.+|++.+++.+.+ |+.+.-+..... .+ ...+.
T Consensus 158 iGP-f~~~~~r~l~r~vl~~~~~-ItvRD~~----S~~~Lk~lGv~~~~v~~~a---DpAF~L~~~~~~~~~---~~~~~ 225 (426)
T PRK10017 158 VGP-FQDEQFNQLANYVFGHCDA-LILRESV----SLDLMKRSNITTAKVEHGV---DTAWLVDHHTEDFTA---SYAVQ 225 (426)
T ss_pred CCC-cCCHHHHHHHHHHHhcCCE-EEEccHH----HHHHHHHhCCCccceEEec---ChhhhCCcccccccc---chhhh
Confidence 532 22221 2222333333 3333333 3333447788877777765 333322211000 00 00111
Q ss_pred HHcCCCCCCeEEEE-Eeeccc-CC----CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC--CCCc-ChHHHHHHHHHH
Q 012132 262 ESLGVRNEDLLFAI-INSVSR-GK----GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS--DMNA-QTKFESELRNYV 332 (470)
Q Consensus 262 ~~~~~~~~~~~i~~-vGrl~~-~K----g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~--g~~~-~~~~~~~l~~~~ 332 (470)
..++...++.+|++ +..+.+ .| +.+...+.++++.+.+.+. +.+++++-. +.+. .+.+....+++.
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~-----g~~Vv~lp~~~~~~~~~~dD~~~~~~l~ 300 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE-----GYQVIALSTCTGIDSYNKDDRMVALNLR 300 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC-----CCeEEEEecccCccCCCCchHHHHHHHH
Confidence 11222223334433 333322 12 1233445555555555432 334444332 1100 012333345555
Q ss_pred HhcCCCCcEEEec---ccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCC----CcceeeecCceeee
Q 012132 333 MQKKIQDRVHFVN---KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLL 405 (470)
Q Consensus 333 ~~~~l~~~V~~~g---~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~----g~~e~v~~~~~G~l 405 (470)
+.+.-+.+++++. ...++..+++.+|++|-.-.+ .++=|++.|+|+|+-... +.-+.+ |...++
T Consensus 301 ~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH-------a~I~a~~~gvP~i~i~Y~~K~~~~~~~l--g~~~~~ 371 (426)
T PRK10017 301 QHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH-------SAIISMNFGTPAIAINYEHKSAGIMQQL--GLPEMA 371 (426)
T ss_pred HhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-------HHHHHHHcCCCEEEeeehHHHHHHHHHc--CCccEE
Confidence 5554444444433 135677899999998865542 577799999999987532 222333 223344
Q ss_pred ecCCCCChHHHHHHHHHHHhCHHHHHH
Q 012132 406 HPVGKEGITPLAKNIVKLATHVERRLT 432 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~~~~~~~~ 432 (470)
++..+.+.++|.+.+.+++++.+..++
T Consensus 372 ~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 372 IDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred echhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 555444478999999999998665443
|
|
| >COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.2e-05 Score=75.70 Aligned_cols=143 Identities=22% Similarity=0.196 Sum_probs=107.8
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChH---HHHHHHHHHHhcCCCCcEE
Q 012132 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 266 ~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~V~ 342 (470)
++++.+.++++-|+..+|...+.+.-...+...+++. ..|.+.+++.|...|.... .-..+...++..+...+|.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 3466788999999999999888887777777776632 4577888888876554321 2223333444433345688
Q ss_pred Eecc-cCCH-HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee--cCceeeeecCCC
Q 012132 343 FVNK-TLTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV--NGTTGLLHPVGK 410 (470)
Q Consensus 343 ~~g~-~~~~-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~--~~~~G~l~~~~d 410 (470)
|+.. .-.+ ..++.++|+-...|+...|..|.+-+-+|..|.+-|+|--|...|+.+ +++||++|....
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 8874 3344 455899999999888779999999999999999999999999999886 889999998764
|
|
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.7e-06 Score=70.71 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC--------cceeeecCceeeeecCCC
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g--------~~e~v~~~~~G~l~~~~d 410 (470)
.+|.+.++.+++.++|+.||++| .-+-+.++.|++++|+|.|.-...+ ....+.+...|..+...+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvI------s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVI------SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEE------ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEE------eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 58999999999999999999998 3344689999999999998766554 122233444566666555
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
.+++.|.++|.++++++..+..+.++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 44789999999999998876665544
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=71.79 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCeEEEEEeecccC-----CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE
Q 012132 269 EDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 269 ~~~~i~~vGrl~~~-----Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
...+++..|..... +-...+++|++++ + .++++..++. ... .++++||.+
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l-----------~-~~viw~~~~~-----~~~--------~~~p~Nv~i 350 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL-----------P-YNVLWKYDGE-----VEA--------INLPANVLT 350 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC-----------C-CeEEEEECCC-----cCc--------ccCCCceEE
Confidence 34777778876432 2234555555433 4 4666655531 110 245689999
Q ss_pred ecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHH
Q 012132 344 VNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLA 417 (470)
Q Consensus 344 ~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la 417 (470)
.++..+ .+++ ..+++|| .-|-..++.||+.+|+|+|+-...+ ....+...+.|...+..+.+.+++.
T Consensus 351 ~~w~Pq-~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~ 423 (507)
T PHA03392 351 QKWFPQ-RAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLV 423 (507)
T ss_pred ecCCCH-HHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHH
Confidence 998643 5677 4589999 4555678999999999999986543 3333445567888776655589999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHH
Q 012132 418 KNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 418 ~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
++|.++++|+..+++..+-++.
T Consensus 424 ~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 424 LAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998766655444333
|
|
| >PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.4e-05 Score=69.66 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=31.5
Q ss_pred EEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCC
Q 012132 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 76 kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||+++.+++| ||-+.++..|+++|+++||+|.|+++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 79999999776 5669999999999999999999999765
|
4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A .... |
| >PRK14986 glycogen phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00095 Score=68.73 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=110.2
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc--
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 335 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-- 335 (470)
+++.| ++++.+.++++-|+..+|...+ ++..+..+.+...+...+.....+++.|...|+.. ....+.+++...
T Consensus 532 ~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIk~I~~va~ 610 (815)
T PRK14986 532 AQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYY-MAKHIIHLINDVAK 610 (815)
T ss_pred HHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4566788899999999999999 88887777654433111123478888887665543 333333333222
Q ss_pred ------CCCC--cEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 336 ------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 336 ------~l~~--~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
.+.+ +|.|+.. . +--..++.++|+-...|+...|..|..=+-+|..|.+.++|--|...|+.++ ++||
T Consensus 611 ~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~ 690 (815)
T PRK14986 611 VINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENI 690 (815)
T ss_pred HhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcE
Confidence 2233 6888874 3 4445568999999998887799999999999999999999999999998875 8899
Q ss_pred eeecCCCCChHHHHH
Q 012132 404 LLHPVGKEGITPLAK 418 (470)
Q Consensus 404 ~l~~~~d~~~~~la~ 418 (470)
+++... .++..+
T Consensus 691 ~~fG~~---~~ev~~ 702 (815)
T PRK14986 691 FIFGNT---AEEVEA 702 (815)
T ss_pred EEeCCC---HHHHHH
Confidence 999765 444444
|
|
| >PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=64.92 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=94.1
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc--
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 335 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-- 335 (470)
++..| ++++.+..+++-|+..+|...+ ++..+....+.......+...+.+++.|...|+.. ...++.+++.+.
T Consensus 433 ~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~-~gK~iIk~I~~va~ 511 (713)
T PF00343_consen 433 KKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDY-MGKEIIKLINNVAE 511 (713)
T ss_dssp HHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-H-HHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4677788899999999999888 55666555443332111233578999998665543 334444444322
Q ss_pred ------CCCC--cEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 336 ------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 336 ------~l~~--~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
.+.+ +|.|+.. . +--..++.++|+-...|+...|..|..-+-+|..|.+.+++--|...|+.+. .++.
T Consensus 512 ~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~ 591 (713)
T PF00343_consen 512 VINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENI 591 (713)
T ss_dssp HHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGS
T ss_pred HHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcE
Confidence 2334 6888875 3 4445568999999998887799999999999999999999998998888653 4678
Q ss_pred eeecCCCCChHHHH
Q 012132 404 LLHPVGKEGITPLA 417 (470)
Q Consensus 404 ~l~~~~d~~~~~la 417 (470)
++|-.. .+++.
T Consensus 592 fiFG~~---~~ev~ 602 (713)
T PF00343_consen 592 FIFGLT---AEEVE 602 (713)
T ss_dssp EEES-B---HHHHH
T ss_pred EEcCCC---HHHHH
Confidence 888654 45543
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B .... |
| >TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00057 Score=70.13 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=111.6
Q ss_pred HHHHcCC--CCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC
Q 012132 260 VRESLGV--RNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 260 ~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
++++.|+ +++.+..+++-|+..+|...+ ++..+..+.+...+.........+++.|...|+.. ....+.+++....
T Consensus 515 i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va 593 (794)
T TIGR02093 515 IKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSVA 593 (794)
T ss_pred HHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHHH
Confidence 3445554 566788889999999999999 88887777654433111112467888887655443 4445555554433
Q ss_pred --------CCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Cce
Q 012132 337 --------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTT 402 (470)
Q Consensus 337 --------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~ 402 (470)
+.+ +|.|+.. ++--..++.+||+-...|+...|..|..=+-+|..|.+.++|--|...|+.++ ++|
T Consensus 594 ~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN 673 (794)
T TIGR02093 594 EVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAEN 673 (794)
T ss_pred HHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCccc
Confidence 344 6888874 34455678999999998887799999999999999999999998998888776 789
Q ss_pred eeeecCCCCChHHHHH
Q 012132 403 GLLHPVGKEGITPLAK 418 (470)
Q Consensus 403 G~l~~~~d~~~~~la~ 418 (470)
+++|-.. .++..+
T Consensus 674 ~fiFG~~---~~ev~~ 686 (794)
T TIGR02093 674 IFIFGLT---VEEVEA 686 (794)
T ss_pred EEEcCCC---HHHHHH
Confidence 9999765 444443
|
This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources. |
| >cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=68.53 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC-
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK- 336 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~- 336 (470)
+++.| ++++.+..+++-|+..+|...+ ++..+....+...+.........+++.|...|+.. ....+.+++....
T Consensus 519 ~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 597 (797)
T cd04300 519 KKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVAD 597 (797)
T ss_pred HHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHH
Confidence 44445 4567788999999999999999 88887776554433111112377888887655443 3344444443321
Q ss_pred -------CCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 337 -------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 337 -------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
+.+ +|.|+.. ++--..++.+||+-...|+...|..|..=+-+|..|.+.++|--|...|+.++ ++|+
T Consensus 598 ~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~ 677 (797)
T cd04300 598 VVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENI 677 (797)
T ss_pred HhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcE
Confidence 334 6888874 34455668999999998887799999999999999999999999998888776 7899
Q ss_pred eeecCC
Q 012132 404 LLHPVG 409 (470)
Q Consensus 404 ~l~~~~ 409 (470)
++|-..
T Consensus 678 fiFG~~ 683 (797)
T cd04300 678 FIFGLT 683 (797)
T ss_pred EEeCCC
Confidence 999765
|
It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK14985 maltodextrin phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=67.69 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=106.8
Q ss_pred HHHcC--CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcC-
Q 012132 261 RESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK- 336 (470)
Q Consensus 261 r~~~~--~~~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~- 336 (470)
+++.| ++++.+.++++-|+..+|...+ ++..+..+.+...+.........+++.|...|+.. ....+.+++....
T Consensus 518 ~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~ 596 (798)
T PRK14985 518 KQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAE 596 (798)
T ss_pred HHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHH
Confidence 34445 4566788889999999999999 88888777654433111112378888887655443 3344444443322
Q ss_pred -------CCC--cEEEecc--cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--Ccee
Q 012132 337 -------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 403 (470)
Q Consensus 337 -------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G 403 (470)
+.+ +|.|+.. ++--..++.++|+....|+...|..|..=+-+|..|.+.++|--|...|+.++ ++||
T Consensus 597 ~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~ 676 (798)
T PRK14985 597 VINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENI 676 (798)
T ss_pred HhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcE
Confidence 223 6888874 34455668999999998887799999999999999999999999998888765 7899
Q ss_pred eeecCC
Q 012132 404 LLHPVG 409 (470)
Q Consensus 404 ~l~~~~ 409 (470)
+++-..
T Consensus 677 f~fG~~ 682 (798)
T PRK14985 677 FIFGHT 682 (798)
T ss_pred EEeCCC
Confidence 999765
|
|
| >KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.034 Score=57.50 Aligned_cols=189 Identities=16% Similarity=0.062 Sum_probs=131.4
Q ss_pred ceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceE
Q 012132 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (470)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~ 310 (470)
.+..+|-|+|...|..............+++..+ .++.+++-+-|+...||+..=+.++.++.....+ -.+++.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe---~~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPE---WIDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChh---hhceEE
Confidence 4667888999988876544433333455565554 4677788888999999999999999998775544 224566
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHh--------cCC--CCcEEEecc---cCCHHHHHHhcCEEEEccCCcccccchHHHH
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQ--------KKI--QDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~--------~~l--~~~V~~~g~---~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (470)
++.+..+...+.+..++++..+.. .+- ...|+++-. ..++.+++..+|+++..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 666665543333322333333221 111 123444432 2788899999999999998 9999999999
Q ss_pred HHhcC----CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHH
Q 012132 378 AMAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 431 (470)
Q Consensus 378 Ama~G----~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 431 (470)
+.+|. .+.|.+..-|..+..++ ...++.+.| .++++..|...++.++.-.
T Consensus 392 ~i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~--~~~~~~~i~~al~~s~~e~ 445 (732)
T KOG1050|consen 392 YILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWD--GDEFAILISKALTMSDEER 445 (732)
T ss_pred HHHhhcccCCceEEeeeccccccccc--cCEEECCcc--hHHHHHHHHHHhhcCHHHH
Confidence 99885 67888887777777744 457888888 8999999999998654333
|
|
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=57.47 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=68.9
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCC----CC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGK----EG 412 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d----~~ 412 (470)
+.+.+|..+ .++++..++..+-|. +--++++||+++|+|+|+-...+ ....+..-+.|+.+...+ .+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 666777654 357777666333333 33478999999999999975432 233333446676664311 23
Q ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHHHcChhHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLATHVERRLTMGKRGYER---VKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~a~~~---~~~~fs~~~~~~~~~~~~~~~ 461 (470)
.+++.++|.+++.+++ -.++.+++++. +.+.=..+.+++.+++.+.+.
T Consensus 416 ~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 416 SDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 8999999999997742 22334444433 333334455555555555444
|
|
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=59.48 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
++..+++..|.+.. ...+..++++.+..+ +.|+ ++++.-++. .... +++|+....|.
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~-----~~~~---------l~~n~~~~~W~ 331 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGE-----PPEN---------LPKNVLIVKWL 331 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCS-----HGCH---------HHTTEEEESS-
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-ccccccccc-----cccc---------ccceEEEeccc
Confidence 44577777888753 233443444444333 3365 666665541 1111 23578888886
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
.+ .++++...+-++=+ -|--+++.||+.+|+|+|+-..-+ ....+++.+.|...+..+.+.+++.++|.++
T Consensus 332 PQ-~~lL~hp~v~~fit----HgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~v 406 (500)
T PF00201_consen 332 PQ-NDLLAHPRVKLFIT----HGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREV 406 (500)
T ss_dssp -H-HHHHTSTTEEEEEE----S--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHH
T ss_pred cc-hhhhhcccceeeee----ccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHH
Confidence 54 47776655433333 344578999999999999986433 3444555567888887766689999999999
Q ss_pred HhCHHHHHHH
Q 012132 424 ATHVERRLTM 433 (470)
Q Consensus 424 l~~~~~~~~~ 433 (470)
++|+..+++.
T Consensus 407 l~~~~y~~~a 416 (500)
T PF00201_consen 407 LENPSYKENA 416 (500)
T ss_dssp HHSHHHHHHH
T ss_pred HhhhHHHHHH
Confidence 9998655443
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.16 Score=48.34 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCeEEEEEe-ecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIIN-SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vG-rl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
.+.+++..| .-...|... .+-++++.+.+.+ ...++++.|+. ...+..+++.+.++ +.+.+.|..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp--~e~~~~l~~~l~~-----~~~~Vvl~g~~-----~e~e~~~~i~~~~~--~~~~l~~k~ 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWP--LEHYAELAELLIA-----KGYQVVLFGGP-----DEEERAEEIAKGLP--NAVILAGKT 240 (334)
T ss_pred CCeEEEeccccccccCCCC--HHHHHHHHHHHHH-----CCCEEEEecCh-----HHHHHHHHHHHhcC--CccccCCCC
Confidence 456677777 555777654 2334444444443 23788999986 35566666666553 223367754
Q ss_pred --CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 --LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 --~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.++..+++.||++|.+.. |. +-=|.|.|+|+|+--
T Consensus 241 sL~e~~~li~~a~l~I~~DS------g~-~HlAaA~~~P~I~iy 277 (334)
T COG0859 241 SLEELAALIAGADLVIGNDS------GP-MHLAAALGTPTIALY 277 (334)
T ss_pred CHHHHHHHHhcCCEEEccCC------hH-HHHHHHcCCCEEEEE
Confidence 889999999999996654 33 334899999999864
|
|
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.034 Score=51.48 Aligned_cols=97 Identities=19% Similarity=0.154 Sum_probs=58.8
Q ss_pred EEEEEeecccCCC--HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--
Q 012132 272 LFAIINSVSRGKG--QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (470)
Q Consensus 272 ~i~~vGrl~~~Kg--~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-- 347 (470)
+++..|.-.+.|. .+...+.++.+.+ .+++++++|+. +..+..+++.+..+-.+.+.+.|..
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~-----~e~~~~~~i~~~~~~~~~~~~~~~~~l 189 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGP-----AERELAEEIAAALGGPRVVNLAGKTSL 189 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEech-----hhHHHHHHHHHhcCCCccccCcCCCCH
Confidence 3334444344443 3455555555533 36888999875 2344455555544322334556653
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.++..+++.||++|.+-. |..- -|.+.|+|+|+--
T Consensus 190 ~e~~~li~~~~l~I~~Ds------g~~H-lA~a~~~p~i~l~ 224 (279)
T cd03789 190 RELAALLARADLVVTNDS------GPMH-LAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHhCCEEEeeCC------HHHH-HHHHcCCCEEEEE
Confidence 788999999999996643 3333 4579999999764
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.046 Score=54.42 Aligned_cols=95 Identities=18% Similarity=0.067 Sum_probs=57.9
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecC-----
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPV----- 408 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~----- 408 (470)
+++.+.++..+ .++++..++..+=+ -+--++++||+++|+|+|+-...+ ....+.+. +.|+-+..
T Consensus 323 ~~~~v~~w~pQ-~~iL~h~~v~~fvt----HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 323 DMGLVVPWCDQ-LKVLCHSSVGGFWT----HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred CCEEEeccCCH-HHHhccCccceEEe----cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 46777787643 45777777633323 334578999999999999976443 23333331 34555531
Q ss_pred CCCChHHHHHHHHHHHhCH-HHHHHHHHHHH
Q 012132 409 GKEGITPLAKNIVKLATHV-ERRLTMGKRGY 438 (470)
Q Consensus 409 ~d~~~~~la~~i~~ll~~~-~~~~~~~~~a~ 438 (470)
+..+.+++++++.+++.++ +.-+++.+++.
T Consensus 398 ~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~ 428 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLESEEGKEMRRRAK 428 (459)
T ss_pred CcCcHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 1123799999999999864 33334444443
|
|
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.033 Score=55.00 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred CcEEEecccCCHHHHHHhcCE--EEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCCC
Q 012132 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKE 411 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~ 411 (470)
++..+.++..+ .++++..++ || + -+--++++||+++|+|+|+-...+ ....+.+. +.|+-+. ++.
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fv--t----H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~ 395 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFW--S----HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDL 395 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeee--e----cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-Ccc
Confidence 46666777644 347777555 65 2 233468999999999999875432 23333332 4666653 233
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+.+++++++.+++.+++ .+++.++++
T Consensus 396 ~~~~v~~av~~lm~~~~-~~~~r~~a~ 421 (451)
T PLN02410 396 DRGAVERAVKRLMVEEE-GEEMRKRAI 421 (451)
T ss_pred cHHHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 48999999999998754 333444443
|
|
| >COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.5 Score=41.86 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCCCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHh
Q 012132 257 REHVRESLGVRNEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (470)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (470)
++.+++.+.. ...++-++||.-++.-.. |.+.+....+.+.+.+ ....+++--+-. -.+..+..++.
T Consensus 150 ~e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~ 218 (329)
T COG3660 150 REAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKN 218 (329)
T ss_pred HHHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHh
Confidence 4455554422 456777788865543333 4444444444444443 345666655542 23445555554
Q ss_pred -cCCCCcEEEeccc---CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC
Q 012132 335 -KKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 335 -~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g 392 (470)
+.-..-+.+-+.. +-..+++++||.++.+.- .=.-.-||.+.|+||-+....+
T Consensus 219 ~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 219 NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred ccccCceeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeEEEecCC
Confidence 3323334444432 346788999999997754 1234569999999998765443
|
|
| >PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.3 Score=43.54 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=139.7
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhh-HHhhcCCcEEEEcccchhhhH
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET-INTALKADLIVLNTAVAGKWL 165 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DiV~~~~~~~~~~~ 165 (470)
+|+.+...++-....+.||+++++........+.. ........++.+....... +.+...+|++.+++..+...-
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~d----sH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vq 76 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPD----SHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQ 76 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTT----SSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCcc----ccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHH
Confidence 37778889999999999999999985443221110 1112223344444444433 334568999999985543332
Q ss_pred HHHh---hhcCCccc--cceeeEEeeeccccchhh--hhcccccccceeeeehhhHHHHHHhhh-hhhc------cCCCc
Q 012132 166 DAVL---KEDVPRVL--PNVLWWIHEMRGHYFKLD--YVKHLPLVAGAMIDSHVTAEYWKNRTR-ERLR------IKMPD 231 (470)
Q Consensus 166 ~~~~---~~~~~~~~--~~~~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~------~~~~~ 231 (470)
.... .+.+..+. .+++...|+.......+. ....++..+.+.+.+... .+.+.+. +.++ -..++
T Consensus 77 E~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g--~f~kv~m~~l~Ps~~~l~~~i~~ 154 (355)
T PF11440_consen 77 EAIINNYEKIIKKIKPSIKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNG--WFSKVLMKELLPSKVSLFDRIKK 154 (355)
T ss_dssp HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTS--HHHHTHHHHHS-SS--SSS----
T ss_pred HHHHHHHHHHHHhccccceeEEEeeccceeeccccccHHHHHHhhcEEEeccccc--hHHHHHHHhhccccCchhhhhhh
Confidence 2111 11111111 244567787643333222 233345556665554432 1122111 1111 11222
Q ss_pred eEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE---EEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i---~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
+..+.|.-++.. -...|..+-.+...+.. +++||..-.||...+++.-++..+ -++
T Consensus 155 ~p~v~nfqpp~~-------------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK--------~~~ 213 (355)
T PF11440_consen 155 FPMVFNFQPPMD-------------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK--------PAG 213 (355)
T ss_dssp ---EEE----B--------------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT--------TTT
T ss_pred cceeeecCCccc-------------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC--------Ccc
Confidence 333444322111 12234434333334444 799999999999999998876533 378
Q ss_pred eEEEEEeCCCCcChHHHHHHHH----------HHHhcCC--CCcEEEecc-c-CCHHHHHHhcCEEEEccCC----cccc
Q 012132 309 VHAVIIGSDMNAQTKFESELRN----------YVMQKKI--QDRVHFVNK-T-LTVAPYLAAIDVLVQNSQA----WGEC 370 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~----------~~~~~~l--~~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~----~~E~ 370 (470)
++-++-|-... +..-.-+.. .+.+..+ ...+..+|. + ++..+.++.+-..+.-+.. -.+.
T Consensus 214 ~~t~~~GierS--~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~ 291 (355)
T PF11440_consen 214 FKTIMEGIERS--PAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRS 291 (355)
T ss_dssp -EEEEE---SS--THHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS-
T ss_pred hhHHhhhhhcC--CceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhh
Confidence 88888875321 122222111 0001111 123666774 3 7888888888776654431 1234
Q ss_pred cchHHHHHHhcCC-CEEecCCCCcc-------eeeecCceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 371 FGRITIEAMAFQL-PVLGTAAGGTT-------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 371 ~g~~~lEAma~G~-PvI~s~~~g~~-------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
+-.+-+|..|||+ ||.-...|..- -.+......+.++..| .++-.+.|.++.+++
T Consensus 292 mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~~ 354 (355)
T PF11440_consen 292 MEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANNR 354 (355)
T ss_dssp --HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-H
T ss_pred hhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccch--HHHHHHHHHHHhccC
Confidence 5678899999996 55544333221 1222333456677766 888888888776653
|
coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B. |
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.095 Score=52.52 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=53.7
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-Cceeeee------
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLH------ 406 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~------ 406 (470)
+.++.+.++..+ ..+++.+++-.+=+. +--++++||+++|+|+|+-...+ ....+.+ -..|+-+
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 357888888755 468888876333332 33468999999999999976432 1211111 1223322
Q ss_pred --cCCCCChHHHHHHHHHHHhCH
Q 012132 407 --PVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 407 --~~~d~~~~~la~~i~~ll~~~ 427 (470)
+....+.+++++++.+++.++
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ccccCcccHHHHHHHHHHHhcCc
Confidence 122223889999999999875
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.052 Score=53.74 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=57.0
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCCCCCh
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVGKEGI 413 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d~~~ 413 (470)
+++.+.++..+ ..+++..++..+=+. +--++++||+.+|+|+|+-...+ ....+.+ -+.|+-+...+ .
T Consensus 328 ~~~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~--~ 400 (448)
T PLN02562 328 KQGKVVSWAPQ-LEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFG--Q 400 (448)
T ss_pred cCEEEEecCCH-HHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCC--H
Confidence 57777787633 467777665443343 33478999999999999875433 3333333 24455553333 8
Q ss_pred HHHHHHHHHHHhCHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLT 432 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~ 432 (470)
+++++++.+++.+++.+++
T Consensus 401 ~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 401 KEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 9999999999988665444
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=50.97 Aligned_cols=96 Identities=8% Similarity=-0.066 Sum_probs=60.9
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCCC---
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVGK--- 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d--- 410 (470)
.++.+.+|..+. ++++...+..+=|+ +--++++||+++|+|+|+-..-+ ....+.+ -+.|..+...+
T Consensus 311 ~g~~v~~W~PQ~-~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQP-LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCHH-HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCc
Confidence 456677776443 57777776444443 23378999999999999975432 2232222 34566664322
Q ss_pred CChHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHV-ERRLTMGKRGYE 439 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~-~~~~~~~~~a~~ 439 (470)
.+.++++++|.++++++ +..+++.+++++
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 24899999999999765 344555555544
|
|
| >TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.49 Score=44.21 Aligned_cols=72 Identities=11% Similarity=-0.034 Sum_probs=43.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 387 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (470)
+.+++++....+ ...+..+++.+.+.-...+......+++..+++.+|++|-...+ .++=|+.+|+|+|+
T Consensus 205 g~~v~~i~~~~~---~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-------~~I~A~~~gvP~i~ 274 (298)
T TIGR03609 205 GAFVLFLPFQQP---QDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-------ALILAAAAGVPFVA 274 (298)
T ss_pred CCeEEEEeCCcc---hhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-------HHHHHHHcCCCEEE
Confidence 455555543221 13344445555443333443222236788899999988866663 57779999999997
Q ss_pred cC
Q 012132 388 TA 389 (470)
Q Consensus 388 s~ 389 (470)
-.
T Consensus 275 i~ 276 (298)
T TIGR03609 275 LS 276 (298)
T ss_pred ee
Confidence 63
|
The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). |
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.2 Score=50.00 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=52.3
Q ss_pred CcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCC--
Q 012132 339 DRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVG-- 409 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~-- 409 (470)
.++.+.++..+ .++++. .++|| .-+--++++||+++|+|+|+-...+ ....+. .-+.|.....+
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFL------THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEE------ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 46777788754 457765 55666 3334568999999999999875432 222222 22456555221
Q ss_pred -CCChHHHHHHHHHHHh-CHH
Q 012132 410 -KEGITPLAKNIVKLAT-HVE 428 (470)
Q Consensus 410 -d~~~~~la~~i~~ll~-~~~ 428 (470)
..+.+++++++.+++. +++
T Consensus 416 ~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 416 TVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CCcCHHHHHHHHHHHhhccHH
Confidence 1127899999999884 443
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.21 Score=49.32 Aligned_cols=93 Identities=13% Similarity=-0.003 Sum_probs=57.0
Q ss_pred cEEEecccCCHHHHHHhcCE--EEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCC---
Q 012132 340 RVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVG--- 409 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~--- 409 (470)
.+.+.+|..+ .++++...+ || .-+--++++||+.+|+|+|+-...+ ....+. .-+.|+-....
T Consensus 318 G~v~~~W~PQ-~~vL~h~~v~~Fv------tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~ 390 (453)
T PLN02764 318 GVVWGGWVQQ-PLILSHPSVGCFV------SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETG 390 (453)
T ss_pred CcEEeCCCCH-HHHhcCcccCeEE------ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCC
Confidence 3555676543 356666544 66 3344578999999999999986443 233332 23445544221
Q ss_pred CCChHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 012132 410 KEGITPLAKNIVKLATHV-ERRLTMGKRGYE 439 (470)
Q Consensus 410 d~~~~~la~~i~~ll~~~-~~~~~~~~~a~~ 439 (470)
+.+.+++.+++.+++++. +..+++.+++++
T Consensus 391 ~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 391 WFSKESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 224899999999999864 444455555543
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.16 Score=50.37 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred cEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCC----C
Q 012132 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVG----K 410 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~----d 410 (470)
+..+.++..+. ++++.+++..+-+. +--++++||+.+|+|+|+-...+ ....+.+ -+.|..+... .
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQE-KILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCHH-HHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 44556776543 57888874333332 22358999999999999976433 2333333 3567665421 2
Q ss_pred CChHHHHHHHHHHHhCHH
Q 012132 411 EGITPLAKNIVKLATHVE 428 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~ 428 (470)
.+.+++++++.+++.+++
T Consensus 400 ~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 400 LKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CCHHHHHHHHHHHhcCch
Confidence 238899999999997643
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.16 Score=50.24 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=58.8
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCC---C
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVG---K 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~---d 410 (470)
.++.+.+|..+. ++++.+++..+=+. +--++++||+++|+|+|+-...+ ....+.+ -+.|...+.+ .
T Consensus 334 ~g~~v~~W~PQ~-~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQV-PVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHH-HHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 468888886543 58888998444343 33478999999999999975432 3333432 3567666532 1
Q ss_pred CChHHHHHHHHHHHhCHHHH
Q 012132 411 EGITPLAKNIVKLATHVERR 430 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~ 430 (470)
.+.+++++++.+++.+++.+
T Consensus 409 ~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred cCHHHHHHHHHHHhcCHHHH
Confidence 24899999999999875433
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.43 Score=47.17 Aligned_cols=94 Identities=7% Similarity=-0.051 Sum_probs=59.9
Q ss_pred EEEecccCCHHHHHHhc--CEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCC---C
Q 012132 341 VHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVG---K 410 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~---d 410 (470)
..+.++..+ .++++.. +.|| .-+--++++||+.+|+|+|+-...+ ....+. .-+.|..+..+ .
T Consensus 314 ~vv~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 314 IVWEGWVEQ-PLILSHPSVGCFV------NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eEEeccCCH-HHHhcCCccceEE------ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 455677544 3567666 4566 3334578999999999999975432 233332 33566666321 1
Q ss_pred CChHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHV-ERRLTMGKRGYERV 441 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~~ 441 (470)
.+.+++++++.+++.++ +..+++.+++++.-
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 34899999999999764 44556666665543
|
|
| >PF15024 Glyco_transf_18: Glycosyltransferase family 18 | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.2 Score=44.32 Aligned_cols=148 Identities=13% Similarity=0.087 Sum_probs=91.8
Q ss_pred EEEeec-ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--cCCH
Q 012132 274 AIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTV 350 (470)
Q Consensus 274 ~~vGrl-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~~~~ 350 (470)
+..|.- .-+||-+..++++.+. -+++-.|.+... ... .++.-|.=+|. ..++
T Consensus 281 lVyGK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~-----~~~---------~~P~~V~NHG~l~~~ef 335 (559)
T PF15024_consen 281 LVYGKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ-----RPP---------NVPSFVKNHGILSGDEF 335 (559)
T ss_pred EEEccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC-----CCc---------ccchhhhhcCcCCHHHH
Confidence 344543 3367778888877643 467777755531 011 22233444453 3789
Q ss_pred HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC---------------cceeee---------cCceeeee
Q 012132 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG---------------TTEIVV---------NGTTGLLH 406 (470)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g---------------~~e~v~---------~~~~G~l~ 406 (470)
..+++.+.+||--... .| |=+.+||+|.|+|.|-..... .+++-. ..-.-+.+
T Consensus 336 ~~lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytV 412 (559)
T PF15024_consen 336 QQLLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTV 412 (559)
T ss_pred HHHHHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEE
Confidence 9999999999954431 33 457999999999999764321 122211 11123556
Q ss_pred cCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 407 PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 407 ~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+.+| .+++.+||.+++..+- .-++--.|+-+.|.+++..+++.
T Consensus 413 d~~n--~~~v~~Avk~il~~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 413 DINN--STEVEAAVKAILATPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred cCCC--HHHHHHHHHHHHhcCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 6666 9999999999988642 12233448888888888766654
|
|
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.24 Score=48.91 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=59.1
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCC---
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGK--- 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d--- 410 (470)
+++.+.++..+ .++++..++..+-++ +-.++++||+++|+|+|+-..-+ ....+.+. +.|+-+...+
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 57888888654 357888774444443 34579999999999999975432 23333332 3555543211
Q ss_pred -CChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 411 -EGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 411 -~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
.+.+++++++.+++.+++ .+++.++++
T Consensus 392 ~~~~e~v~~av~~vm~~~~-~~~~r~~a~ 419 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEK-SKEMKENAG 419 (449)
T ss_pred cccHHHHHHHHHHHhcCCh-HHHHHHHHH
Confidence 137999999999997643 233444443
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.32 Score=48.42 Aligned_cols=84 Identities=11% Similarity=-0.043 Sum_probs=54.8
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC--CC
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG--KE 411 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~--d~ 411 (470)
.++.+.++..+ .++++...+..+-+ -+--++++||+.+|+|+|+-...+ ....+ +.-+.|...+.. ..
T Consensus 338 rg~vv~~W~PQ-~~iL~h~~vg~Fit----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 338 RGFVVPSWAPQ-AEILAHQAVGGFLT----HCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVI 412 (481)
T ss_pred CCEEEeecCCH-HHHhCCcccCeeEe----cCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcc
Confidence 35777888654 35777777633333 334578999999999999986433 22233 233456666431 23
Q ss_pred ChHHHHHHHHHHHhCH
Q 012132 412 GITPLAKNIVKLATHV 427 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~ 427 (470)
+.++++++|.+++.++
T Consensus 413 ~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 413 SRSKIEALVRKVMVEE 428 (481)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 4899999999999763
|
|
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.26 Score=49.28 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=50.4
Q ss_pred cEEEecccCCHHHHHHhc--CEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cc-eeeecCceeeeecCC---
Q 012132 340 RVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TT-EIVVNGTTGLLHPVG--- 409 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~-e~v~~~~~G~l~~~~--- 409 (470)
+..+.++..+ ..+++.. +.|| .-+--++++||+++|+|+|+-...+ .. .++..-+.|+.+...
T Consensus 341 rg~v~~w~PQ-~~iL~h~~vg~fv------tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 413 (475)
T PLN02167 341 RGLVCGWAPQ-VEILAHKAIGGFV------SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVS 413 (475)
T ss_pred CeeeeccCCH-HHHhcCcccCeEE------eeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccc
Confidence 4556677533 3567664 4566 2233468999999999999875332 22 123333456655321
Q ss_pred ----CCChHHHHHHHHHHHhCH
Q 012132 410 ----KEGITPLAKNIVKLATHV 427 (470)
Q Consensus 410 ----d~~~~~la~~i~~ll~~~ 427 (470)
..+.+++++++.+++.++
T Consensus 414 ~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 414 AYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccCCcccHHHHHHHHHHHhcCC
Confidence 123789999999999754
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.47 Score=44.34 Aligned_cols=249 Identities=15% Similarity=0.050 Sum_probs=124.0
Q ss_pred chhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhhhHH
Q 012132 88 GGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (470)
|.+....-|+++|... ++++..+........ +..... ...... ............||+|++..........
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~------lp~~~~-~~~~~~-~~~~~~~~~~~~pdLiIsaGr~t~~~~~ 73 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRW------LPRLLP-APLRAL-LKPFSPALEPPWPDLIISAGRRTAPAAL 73 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhh------cccccc-chHHHh-hhcccccccCCCCcEEEECCCchHHHHH
Confidence 5577888899999773 788877764431100 000000 000000 0001111223579999998755544333
Q ss_pred HHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhcc-CCCceE---EEecCCchh
Q 012132 167 AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTY---VVHLGNSKE 242 (470)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~---vi~ngvd~~ 242 (470)
.+.+... .-...+|-+.+... ...+|-+++.... +. ..+++. ..+|.++.+
T Consensus 74 ~l~r~~g-----g~~~~V~i~~P~~~-------~~~FDlvi~p~HD-------------~~~~~~Nvl~t~ga~~~i~~~ 128 (311)
T PF06258_consen 74 ALRRASG-----GRTKTVQIMDPRLP-------PRPFDLVIVPEHD-------------RLPRGPNVLPTLGAPNRITPE 128 (311)
T ss_pred HHHHHcC-----CCceEEEEcCCCCC-------ccccCEEEECccc-------------CcCCCCceEecccCCCcCCHH
Confidence 3332211 11123333322221 1233444443332 11 123322 234555555
Q ss_pred hhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCC--CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc
Q 012132 243 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (470)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~K--g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~ 320 (470)
..... +.++..+++-.+.+.+.+.+|.-+..- +.+..-+.+.++.+..++ ....+.|..+.-.
T Consensus 129 ~l~~a---------~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRRT- 193 (311)
T PF06258_consen 129 RLAEA---------AAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRRT- 193 (311)
T ss_pred HHHHH---------HHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCCC-
Confidence 43322 344555565445666666788643322 333222233333332322 3478888887532
Q ss_pred ChHHHHHHHHHHHhcCCCCcEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC
Q 012132 321 QTKFESELRNYVMQKKIQDRVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 392 (470)
Q Consensus 321 ~~~~~~~l~~~~~~~~l~~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g 392 (470)
.++..+.|++..+ -.+.+.+... - +-+..+|+.||.++.+.- .-.-+.||.+.|+||.+...++
T Consensus 194 p~~~~~~L~~~~~---~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D-----SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 194 PPEAEAALRELLK---DNPGVYIWDGTGENPYLGFLAAADAIVVTED-----SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHHHHhhc---CCCceEEecCCCCCcHHHHHHhCCEEEEcCc-----cHHHHHHHHHcCCCEEEecCCC
Confidence 1134555555544 2346644433 2 457889999999998764 1234679999999999987765
|
The function of this family is unknown. |
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.65 Score=46.59 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=53.0
Q ss_pred CcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cc-eeeecCceeeeecC---
Q 012132 339 DRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TT-EIVVNGTTGLLHPV--- 408 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~-e~v~~~~~G~l~~~--- 408 (470)
+++.+.++..+ .+++ .++++|| .-+--++++||+.+|+|+|+-...+ .. .+++.-+.|..+..
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~Fv------tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFV------THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCccc------ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 46666777543 3566 4445566 3333468999999999999975432 22 22333345555431
Q ss_pred --------CCCChHHHHHHHHHHHh-CHHHHH
Q 012132 409 --------GKEGITPLAKNIVKLAT-HVERRL 431 (470)
Q Consensus 409 --------~d~~~~~la~~i~~ll~-~~~~~~ 431 (470)
...+.++++++|.+++. +++.++
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~ 446 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLMEQDSDVRK 446 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhcCCHHHHH
Confidence 12237899999999996 544433
|
|
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.62 Score=46.50 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=57.5
Q ss_pred CCcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeec---
Q 012132 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHP--- 407 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~--- 407 (470)
.+++.+.++..+ ..++ .+..+|| .-+--++++||+.+|+|+|+-..-+ ....+.+. +.|+-+.
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fv------tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~ 408 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFV------THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE 408 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEE------ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc
Confidence 357777787654 3466 4456666 3334578999999999999975432 22223332 4555552
Q ss_pred --CCCCChHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012132 408 --VGKEGITPLAKNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 408 --~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
.+..+.+++++++.+++.+++ -+++.+++++
T Consensus 409 ~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 409 AENKLITREEVAECLLEATVGEK-AAELKQNALK 441 (480)
T ss_pred cccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 112237899999999997643 2344444443
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.35 Score=47.87 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=53.2
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecC--CC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPV--GK 410 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~--~d 410 (470)
.++..+.++..+ .++++..++-.+-+. +-.++++||+.+|+|+|+-...+ ....+.+. +.|+-... .+
T Consensus 326 ~~~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 356677787654 357888776444443 33478999999999999875432 22223221 23444321 11
Q ss_pred -CChHHHHHHHHHHHhCH
Q 012132 411 -EGITPLAKNIVKLATHV 427 (470)
Q Consensus 411 -~~~~~la~~i~~ll~~~ 427 (470)
.+.+++++++.+++.++
T Consensus 401 ~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cCcHHHHHHHHHHHHhhh
Confidence 13789999999999754
|
|
| >PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.3 Score=44.82 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCc
Q 012132 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~-------Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (470)
.++..++++...... .....+++.+..+.+ ..|+.+++|==.......... ....+..-..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 445556666665443 234556666665544 347888877544210000011 22222211245
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+.+......+.+++..||.++.-+ +.+-+||+.+|+||++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVIVFG 225 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceEEec
Confidence 666666678999999999887543 358999999999999974
|
Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport |
| >TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.44 Score=45.34 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHHHHcCCCC-CCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH
Q 012132 258 EHVRESLGVRN-EDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 333 (470)
Q Consensus 258 ~~~r~~~~~~~-~~~~i~~vGr-l~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~ 333 (470)
+.+..+++++. .+++++..|. ..+.|... ...+.+..+.+ .+.++++.|+.. ..+..+++.+
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~~-----e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSAK-----DHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEEChh-----hHHHHHHHHH
Confidence 34556667654 4566666665 34667554 55555554432 357888998752 2333344433
Q ss_pred hcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 334 ~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
..+ ...+.+.|.. .++..+++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 228 ~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS------G-p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS------G-LMHVAAALNRPLVAL 276 (334)
T ss_pred hCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC------H-HHHHHHHcCCCEEEE
Confidence 322 1123356753 789999999999996543 2 233488999999974
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.7 Score=45.92 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=49.1
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-Cceeeeec------
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHP------ 407 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~------ 407 (470)
+++.+.+|..+ .++++...+..+=+. +--++++||+.+|+|+|+-...+ ....+.+ -+.|+-+.
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccc
Confidence 46666687544 246666555333332 33468999999999999875433 2222222 34454221
Q ss_pred CCC-CChHHHHHHHHHHHh
Q 012132 408 VGK-EGITPLAKNIVKLAT 425 (470)
Q Consensus 408 ~~d-~~~~~la~~i~~ll~ 425 (470)
..+ .+.+++.++|.+++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 111 137899999999996
|
|
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.2 Score=42.74 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=49.9
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeec------
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHP------ 407 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~------ 407 (470)
.++.+.|+..+ ..+++..++..+-+ .+-.++++||+++|+|+|+-...+ ....+. .-+.|+-+.
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvt----H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLT----HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEe----cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 46777788655 56788888733333 344579999999999999876432 111111 112222211
Q ss_pred ----C--C-CCChHHHHHHHHHHHh
Q 012132 408 ----V--G-KEGITPLAKNIVKLAT 425 (470)
Q Consensus 408 ----~--~-d~~~~~la~~i~~ll~ 425 (470)
. + ..+.+++++++.+++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhc
Confidence 0 0 0127899999999996
|
|
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.5 Score=42.71 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHH-HHH-HHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF-ESE-LRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~-~~~-l~~~~~~~~l~~~V~~~g 345 (470)
.++.+++..|.-.+.|.... +-+.++.+.+.+ ....++++|+. .. ..+ .++..+... ...+.+.|
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~-----~~~~vvl~g~~-----~~~~~~~~~~~~~~~~-~~~~~~~~ 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPA--EKWAELIERLKE-----RGYRVVLLGGP-----EEQEKEIADQIAAGLQ-NPVINLAG 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--H--HHHHHHHHHHCC-----CT-EEEE--SS-----HHHHHHHHHHHHTTHT-TTTEEETT
T ss_pred cCCeEEEeecCCCccccCCH--HHHHHHHHHHHh-----hCceEEEEccc-----hHHHHHHHHHHHHhcc-cceEeecC
Confidence 45677777777667777554 444444444443 23788888886 22 223 333333222 12577777
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.. .++..+++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 171 ~~~l~e~~ali~~a~~~I~~Dt------g-~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRADLVIGNDT------G-PMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSSEEEEESS------H-HHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCCEEEecCC------h-HHHHHHHHhCCEEEE
Confidence 53 788899999999996654 2 344589999999986
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.6 Score=42.27 Aligned_cols=95 Identities=12% Similarity=-0.000 Sum_probs=56.3
Q ss_pred cEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC-----
Q 012132 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG----- 409 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~----- 409 (470)
.+.+.++..+ ..+++..++..+-+. +--++++||+.+|+|+|+-..-+ ....+ ..-+.|+.....
T Consensus 340 g~~v~~w~PQ-~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWAPQ-KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecCCH-HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 3556677543 467777775333332 23468999999999999875332 22222 223456655321
Q ss_pred CCChHHHHHHHHHHHhCHH-HHHHHHHHHHH
Q 012132 410 KEGITPLAKNIVKLATHVE-RRLTMGKRGYE 439 (470)
Q Consensus 410 d~~~~~la~~i~~ll~~~~-~~~~~~~~a~~ 439 (470)
..+.++++++|.+++.+++ ..+++.+++++
T Consensus 415 ~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 415 FVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1137999999999997643 23344444433
|
|
| >PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.37 Score=40.44 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=23.5
Q ss_pred ccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhh
Q 012132 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 244 (470)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~ 244 (470)
...+..++.+....+.+-..+ .+|+.||+-|||++.+
T Consensus 134 ~~~D~~isPT~wQ~~~fP~~~-------r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 134 EQADAGISPTRWQRSQFPAEF-------RSKISVIHDGIDTDRF 170 (171)
T ss_pred HhCCcCcCCCHHHHHhCCHHH-------HcCcEEeecccchhhc
Confidence 344555555555544443322 2679999999999865
|
This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important. |
| >PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.6 Score=39.85 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=57.8
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.++++++..|.-.+.|... ...+.+..+.+ .+.++++.|+++ ...+..+++.+.. .++.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 3455544555434556544 44555544422 356777764331 1233333333321 3466677
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.. .++..+++.||++|.+-. | .+==|.|+|+|+|+-=
T Consensus 241 ~~sL~elaali~~a~l~I~nDS------G-p~HlA~A~g~p~valf 279 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT------G-LSHLTAALDRPNITLY 279 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC------c-HHHHHHHhCCCEEEEE
Confidence 53 788999999999996553 2 3445899999999753
|
|
| >PRK10422 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.68 Score=44.42 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=61.9
Q ss_pred CCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 269 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
++++++..|.-.+.|... ...+.++.+ .+ .+.+++++|+..+. .....++..+.......+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L----~~-----~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDAL----QA-----RGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHH----HH-----CCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCC
Confidence 467777777766777654 444444444 22 46788888764211 12223344433222233556675
Q ss_pred c--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 347 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 347 ~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
. .++..+++.||++|..-. | .+==|.|.|+|+|+--
T Consensus 251 ~sL~el~ali~~a~l~v~nDS------G-p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS------A-PAHIAAAVNTPLICLF 288 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEEE
Confidence 3 789999999999996543 2 2334789999999753
|
|
| >PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.4 Score=38.68 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=30.6
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 390 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~ 390 (470)
..++..+++.+|++|....+ ..+=|+++|+|+|+-+.
T Consensus 248 ~~~~~~~~~~~~~~Is~RlH-------~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 248 PDELLELISQADLVISMRLH-------GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHHhcCCEEEecCCH-------HHHHHHHcCCCEEEEec
Confidence 37889999999999977763 56779999999998653
|
CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ]. |
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.3 Score=42.51 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=64.2
Q ss_pred HHHHcCCC-CCCeEEEEEeec-ccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc
Q 012132 260 VRESLGVR-NEDLLFAIINSV-SRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (470)
Q Consensus 260 ~r~~~~~~-~~~~~i~~vGrl-~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (470)
+...+++. .+.++++..|.- .+.|... .+.+.++.+.+ .+++++++|+. +..+..++..+..
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~-----~e~~~~~~i~~~~ 235 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSA-----KDHEAGNEILAAL 235 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCH-----HhHHHHHHHHHhc
Confidence 44555553 345666666653 3567544 44444444422 46788888875 2333444444443
Q ss_pred CCC--Cc-EEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 336 KIQ--DR-VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 336 ~l~--~~-V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+-. .+ +.+.|.. .++..+++.||++|-+-. | .+==|.|.|+|+|+-
T Consensus 236 ~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT------G-p~HlAaA~g~P~val 286 (348)
T PRK10916 236 NTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVAL 286 (348)
T ss_pred ccccccceeeccCCCCHHHHHHHHHhCCEEEecCC------h-HHHHHHHhCCCEEEE
Confidence 211 12 4555653 788999999999996543 2 233588999999974
|
|
| >PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.9 Score=37.51 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=66.2
Q ss_pred cEEEEEeeccCCCchh-HHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcE
Q 012132 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (470)
||||++.+.+ ||.- ..+..|++.+ .|+++++|..+..- .++..|-.+.- .+.+.....+|+
T Consensus 1 M~ILlle~y~--ggSHk~~~~~L~~~~---~~~~~lltLP~r~w----------~WRmRg~AL~~---a~~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY--GGSHKQWADGLAAHS---EHEWTLLTLPARKW----------HWRMRGAALYF---AQQIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc--ccCHHHHHHHHHHhc---cCCEEEEEcCCCcc----------ccccCCCHHHH---hhccccccCCCE
Confidence 7999999876 3432 3344444444 48999999644321 11122221111 133444567899
Q ss_pred EEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh---------hhhc--ccccccceeeeehhhHHHHHHhhh
Q 012132 154 IVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---------DYVK--HLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~---------~~~~--~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
|++.+.....-+..+.. .. ..+|.+.+.|+-.-.|-.. .+.. ..--+|.++.+|..-.+.+.+...
T Consensus 63 l~aTsmldLa~l~gL~p-~l--~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRP-DL--ANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred EEeeccccHHHHHhhcc-CC--CCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 99987543322222221 11 2257778899754322110 0111 112456777788777766665544
Q ss_pred h
Q 012132 223 E 223 (470)
Q Consensus 223 ~ 223 (470)
.
T Consensus 140 ~ 140 (168)
T PF12038_consen 140 S 140 (168)
T ss_pred H
Confidence 3
|
It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important. |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.32 Score=36.69 Aligned_cols=78 Identities=10% Similarity=0.221 Sum_probs=53.3
Q ss_pred EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec----cc-C--CHHHHHHhcCEEEEccCCccccc---chHHHHHHh
Q 012132 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN----KT-L--TVAPYLAAIDVLVQNSQAWGECF---GRITIEAMA 380 (470)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g----~~-~--~~~~~~~~aDv~v~pS~~~~E~~---g~~~lEAma 380 (470)
++|+|+-. .....+++.++++|.. .+.+ | .. . .+...+..+|++|++.. .=+- -.+--+|-.
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~~-~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~--~vsH~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGGK-LIHH-GRDGGDEKKASRLPSKIKKADLVIVFTD--YVSHNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCCE-EEEE-ecCCCCccchhHHHHhcCCCCEEEEEeC--CcChHHHHHHHHHHHH
Confidence 57788721 3788899999998864 3333 3 22 3 37888999999998865 2222 233447888
Q ss_pred cCCCEEecCCCCccee
Q 012132 381 FQLPVLGTAAGGTTEI 396 (470)
Q Consensus 381 ~G~PvI~s~~~g~~e~ 396 (470)
.|+|++.++..|...+
T Consensus 74 ~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 74 YGIPIIYSRSRGVSSL 89 (97)
T ss_pred cCCcEEEECCCCHHHH
Confidence 9999999986665443
|
|
| >COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.94 E-value=9 Score=36.68 Aligned_cols=100 Identities=17% Similarity=0.105 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee
Q 012132 324 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV 397 (470)
Q Consensus 324 ~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v 397 (470)
...-.+..+....-.+++.+.... +++-..++++|+.|-.-.+ +++=||+.|+|+|+-.... +.+-+
T Consensus 251 d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-------saI~al~~g~p~i~i~Y~~K~~~l~~~~ 323 (385)
T COG2327 251 DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-------SAIMALAFGVPAIAIAYDPKVRGLMQDL 323 (385)
T ss_pred hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-------HHHHHHhcCCCeEEEeecHHHHHHHHHc
Confidence 344444444444333567666542 4566689999998855442 4666999999999875432 33323
Q ss_pred ecCceeeeecCCCCChHHHHHHHHHHHhC-HHHHHH
Q 012132 398 VNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLT 432 (470)
Q Consensus 398 ~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~ 432 (470)
+..++..+..+.+.+.+.+...+.+.+ ++++++
T Consensus 324 --gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 324 --GLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred --CCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 444566666655588888888887774 444443
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.4 Score=44.48 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=53.5
Q ss_pred CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC-CC---cc-eeeecCceeeeecCCCCCh
Q 012132 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-GG---TT-EIVVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g---~~-e~v~~~~~G~l~~~~d~~~ 413 (470)
.+|.+.+|..+..-++..-.+..+=++ -|++ +++|++.+|+|+|+... +. .. -+.+.+..+.+.. .+...
T Consensus 335 ~nV~~~~W~PQ~~lll~H~~v~~FvTH---gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~-~~~~~ 409 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLLLDHPAVGGFVTH---GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDK-RDLVS 409 (496)
T ss_pred CceEEecCCCcHHHhcCCCcCcEEEEC---Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEeh-hhcCc
Confidence 478888887665444333323333342 4444 45999999999996542 22 23 3333444444433 33223
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLTMGKR 436 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~ 436 (470)
..+.+++..++.+++..+...+-
T Consensus 410 ~~~~~~~~~il~~~~y~~~~~~l 432 (496)
T KOG1192|consen 410 EELLEAIKEILENEEYKEAAKRL 432 (496)
T ss_pred HHHHHHHHHHHcChHHHHHHHHH
Confidence 44888999998887755444333
|
|
| >TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I | Back alignment and domain information |
|---|
Probab=92.62 E-value=3.9 Score=38.51 Aligned_cols=98 Identities=15% Similarity=0.063 Sum_probs=59.9
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
+++.+++..|.-.+.|... ...+.+..+.+ .+.+++++|+++ ...+..+++.+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 3556667777555677653 55555554432 357788875541 23334444444332 234567
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.. .++..+++.||++|.+-. | .+==|.|.|+|+|+-
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS------g-p~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT------G-LTHLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC------h-HHHHHHHcCCCEEEE
Confidence 53 788999999999996543 2 233477899999975
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.9 Score=41.13 Aligned_cols=102 Identities=10% Similarity=-0.011 Sum_probs=60.7
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec
Q 012132 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (470)
.+.++++..|.-.+.|... ...+.++.+ .+ .+..++++|+..+. ..+..++..+..+-+..+.+.|
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l----~~-----~~~~ivl~g~p~~~---e~~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDAL----HA-----RGYEVVLTSGPDKD---ELAMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHH----Hh-----CCCeEEEecCCCHH---HHHHHHHHHhhCCCCcccccCC
Confidence 3456666667655666543 444444443 22 35788898864211 1222344333333222345667
Q ss_pred cc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
.. .++..+++.||++|-+-. | .+==|.|.|+|+|+-
T Consensus 248 ~~sL~el~ali~~a~l~Vs~DS------G-p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVDS------V-PMHMAAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 53 789999999999996543 2 344589999999975
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >KOG3349 consensus Predicted glycosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.25 E-value=5 Score=32.52 Aligned_cols=99 Identities=10% Similarity=0.132 Sum_probs=60.1
Q ss_pred CeEEEEEeecccCCCHHHHHHHH--HHHHHHHHhhcccCCceEEE-EEeCCCCcChHHHHHHHHHHHhcCCCCcEEEec-
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSF--YESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN- 345 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~--~~l~~~l~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g- 345 (470)
..+++.+|.-. .|.++.+. ....+.+.+.| =.+|+ =+|.|....+ +......+. ..+.+.|
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G----~~kLiiQ~Grg~~~~~---d~~~~~~k~----~gl~id~y 68 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRG----FTKLIIQIGRGQPFFG---DPIDLIRKN----GGLTIDGY 68 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcC----ccEEEEEecCCccCCC---CHHHhhccc----CCeEEEEE
Confidence 35677788532 78888775 34455555542 22444 3576632211 111211122 2345555
Q ss_pred -ccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 346 -KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 346 -~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+...+.++++.||+++ .-+-..+++|-+..|+|.|+.-
T Consensus 69 ~f~psl~e~I~~AdlVI------sHAGaGS~letL~l~KPlivVv 107 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADLVI------SHAGAGSCLETLRLGKPLIVVV 107 (170)
T ss_pred ecCccHHHHHhhccEEE------ecCCcchHHHHHHcCCCEEEEe
Confidence 4589999999999999 3333558999999999988753
|
|
| >PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [] | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.98 Score=38.10 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=51.0
Q ss_pred hhHHhhcCCcEEEEcccchhhh-HHHHhhhcCCccccceeeEEeee---ccccchhhhhcccccccceeeeehhhHHHHH
Q 012132 143 ETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEM---RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (470)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (470)
..+.++.+||+|++..+..... +..+...+.. ..++++..+.+. +..| .-+..|..++.+..+.+.+.
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~-~~~p~~tvvTD~~~~H~~W-------~~~~~D~y~Vase~~~~~l~ 153 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLSRLKRRGRL-PNIPVVTVVTDFDTVHPFW-------IHPGVDRYFVASEEVKEELI 153 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHHHHHHhhcc-cCCcEEEEEcCCCCCCcCe-------ecCCCCEEEECCHHHHHHHH
Confidence 3455679999999999887666 5544333321 113444444443 2222 22567888888888766665
Q ss_pred HhhhhhhccCCCceEEEec
Q 012132 219 NRTRERLRIKMPDTYVVHL 237 (470)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~n 237 (470)
..|++++++.+..-
T Consensus 154 -----~~Gi~~~~I~vtGi 167 (169)
T PF06925_consen 154 -----ERGIPPERIHVTGI 167 (169)
T ss_pred -----HcCCChhHEEEeCc
Confidence 46999998887543
|
; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process |
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=90.10 E-value=6 Score=39.40 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=47.4
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeec----CCCC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHP----VGKE 411 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~----~~d~ 411 (470)
+.+.++..+. ++++...+..+-+. +--++++||+.+|+|+|+-...+ ....+ +.-+.|+-+. .+..
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 5566775443 45666555333332 33468999999999999975432 12222 2223444442 1112
Q ss_pred ChHHHHHHHHHHHh
Q 012132 412 GITPLAKNIVKLAT 425 (470)
Q Consensus 412 ~~~~la~~i~~ll~ 425 (470)
+.+++++++.+++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 37899999999995
|
|
| >PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.5 Score=36.99 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=48.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHH-hhcCC
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TALKA 151 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (470)
+..+|++++..-..|| -..-+++.|.++|++|.++...+..............+...++.+.......... ...++
T Consensus 24 ~~~~v~il~G~GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGG---DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp TT-EEEEEE-SSHHHH---HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCE
T ss_pred CCCeEEEEECCCCChH---HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccc
Confidence 3568999886544444 5667899999999999997654444444434444556667777776644433221 22367
Q ss_pred cEEEE
Q 012132 152 DLIVL 156 (470)
Q Consensus 152 DiV~~ 156 (470)
|+|+=
T Consensus 101 dlIID 105 (169)
T PF03853_consen 101 DLIID 105 (169)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77763
|
In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A .... |
| >PRK09739 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.7 Score=37.86 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=32.8
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|++||||+|..+...+|. ...+..+++.+.+.|++|.++-..
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 457899999877655554 577888889999999999988743
|
|
| >PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.3 Score=35.79 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC
Q 012132 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK 140 (470)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (470)
|--.=...++++|+++||||.+.+... +.......|+.+.+..
T Consensus 10 Ghv~P~lala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 10 GHVYPFLALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPIP 52 (139)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEESS
T ss_pred hHHHHHHHHHHHHhccCCeEEEeeccc----------ceecccccCceEEEec
Confidence 334668899999999999999888542 3455567777776654
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B .... |
| >PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=2.7 Score=39.46 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh-HHHhhhhhhhhcceeeEecCC-----hhhHHh
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKG-----QETINT 147 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 147 (470)
||||+|+.+. .+.....+.|.+.|++|..+....+..... ....+.....+.|++++.... .....+
T Consensus 2 ~mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~ 74 (312)
T PRK06988 2 KPRAVVFAYH-------NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVA 74 (312)
T ss_pred CcEEEEEeCc-------HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHH
Confidence 4899998753 356666777777899987666443322111 111344556677888765322 223456
Q ss_pred hcCCcEEEEcc
Q 012132 148 ALKADLIVLNT 158 (470)
Q Consensus 148 ~~~~DiV~~~~ 158 (470)
..+||++++..
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 78999998754
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.27 E-value=20 Score=34.93 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=50.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchH---HH-HHHhcCCC
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI---TI-EAMAFQLP 384 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~---~l-EAma~G~P 384 (470)
.++.|++.- .+.-++++++++. ... ..+++..++..+|+++..+- .+-++. .+ +|+.-...
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~----~~~-~l~el~~~l~~~DvVissTs---a~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGA----EAV-ALEELLEALAEADVVISSTS---APHPIITREMVERALKIRKR 267 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCC----eee-cHHHHHHhhhhCCEEEEecC---CCccccCHHHHHHHHhcccC
Confidence 455666653 4455666776651 111 12789999999999987764 333333 22 44454455
Q ss_pred EEecCCCCcceeeec---CceeeeecCCC
Q 012132 385 VLGTAAGGTTEIVVN---GTTGLLHPVGK 410 (470)
Q Consensus 385 vI~s~~~g~~e~v~~---~~~G~l~~~~d 410 (470)
.+..|.+-.+++-.+ -.+-++++-+|
T Consensus 268 ~livDiavPRdie~~v~~l~~v~l~~iDD 296 (414)
T COG0373 268 LLIVDIAVPRDVEPEVGELPNVFLYTIDD 296 (414)
T ss_pred eEEEEecCCCCCCccccCcCCeEEEehhh
Confidence 678887776665322 12336666444
|
|
| >PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] | Back alignment and domain information |
|---|
Probab=85.39 E-value=0.82 Score=42.69 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=47.4
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcC-CCEEecCC--CCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G-~PvI~s~~--~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
.+..+.|+.+..++.|.- ...+..-+.|||++| +|||.++. -...+++.=....+.++..+ ..+|.+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~--~~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEAD--LPELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHH--HHHHHHHH
Confidence 346788999999999875 445788999999999 57777662 23566664455566666554 54444444
|
Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane |
| >PRK00207 sulfur transfer complex subunit TusD; Validated | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.2 Score=34.00 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=31.6
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCce-EEEEec
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTK-VNWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~-V~v~~~ 112 (470)
||++++....|.|+. .+...++++++.+.||+ |.||-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 689999988777655 68899999999999999 477763
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=84.12 E-value=4.5 Score=32.06 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 393 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~ 393 (470)
+++.+++..+|++|--|. .+..--.+-.++.+|+|+|..-.|..
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 678899999999998887 66666667788999999998776654
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=83.97 E-value=13 Score=37.22 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=64.3
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcC-CCEEecCC--CCcceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G-~PvI~s~~--~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
....+.++.+..++.|.- .+...-.+.||+.+| +|||.+|. ....++++-.+.++.++..+ +..+ |.+.|
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~--v~~~---~~~iL 407 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKD--VPEL---IKNIL 407 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHH--hhhH---HHHHH
Confidence 567788999999999997 777778999999999 58888874 34556665556677777333 5555 33333
Q ss_pred h--CHHHHHHHHHHHHHHHHHHcChhH
Q 012132 425 T--HVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 425 ~--~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
. ..+....|.++....+.++|.+..
T Consensus 408 ~~i~~~~~~~m~~~v~~~v~r~~~~~~ 434 (464)
T KOG1021|consen 408 LSIPEEEVLRMRENVIRLVPRHFLKKP 434 (464)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhEEeCC
Confidence 3 233445666665555666665543
|
|
| >PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family | Back alignment and domain information |
|---|
Probab=83.27 E-value=2.6 Score=36.46 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=29.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCC
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (470)
||||+...+-.- +.-+..|+++|++.||+|.|+++...+
T Consensus 1 M~ILlTNDDGi~---a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGID---APGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-TT---SHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCCC---CHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 799998875332 356889999998889999999976554
|
This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A .... |
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=83.11 E-value=4 Score=41.18 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=27.1
Q ss_pred EEEEEeeccCCCch-------hHHHHHHHHHHHhCC-ceEEEEec
Q 012132 76 LVLLVSHELSLSGG-------PLLLMELAFLLRGVG-TKVNWITI 112 (470)
Q Consensus 76 kIl~v~~~~~~~G~-------~~~~~~l~~~L~~~G-~~V~v~~~ 112 (470)
||++|.+.+..+|. +.-+..+|..|.+.| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 58888876654442 234677888899999 89999853
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=83.02 E-value=14 Score=32.40 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=54.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhc-CCCCcEEEecccCCHHHHHHhcCEEEEccCC-------ccc-ccchHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 377 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~-------~~E-~~g~~~lE 377 (470)
.+.++.++.......+++...+.+..+++ |....+...-..++..+.+..||++++|-=+ +.+ ++.-.+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 46788998887654445677777777777 7642222211235778899999999988531 111 22233446
Q ss_pred HHhcCCCEEecCCCC
Q 012132 378 AMAFQLPVLGTAAGG 392 (470)
Q Consensus 378 Ama~G~PvI~s~~~g 392 (470)
+...|+|++.+..|.
T Consensus 110 ~~~~g~~i~G~SAGa 124 (212)
T cd03146 110 ALERGVVYIGWSAGS 124 (212)
T ss_pred HHHCCCEEEEECHhH
Confidence 667899999886554
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=24 Score=34.56 Aligned_cols=72 Identities=4% Similarity=-0.064 Sum_probs=42.8
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
.+.|+... .+.-++++++++- .....+ +++...+..+|+++..+. -+-++.- ..+.-+.|.+.-|
T Consensus 207 ~I~V~nRt-------~~ra~~La~~~~~---~~~~~~-~~l~~~l~~aDiVI~aT~---a~~~vi~-~~~~~~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT-------IEKAQKITSAFRN---ASAHYL-SELPQLIKKADIIIAAVN---VLEYIVT-CKYVGDKPRVFID 271 (414)
T ss_pred EEEEECCC-------HHHHHHHHHHhcC---CeEecH-HHHHHHhccCCEEEECcC---CCCeeEC-HHHhCCCCeEEEE
Confidence 56666664 2334555555431 112222 567888999999998875 2333332 3344678999888
Q ss_pred CCCccee
Q 012132 390 AGGTTEI 396 (470)
Q Consensus 390 ~~g~~e~ 396 (470)
.+-.+++
T Consensus 272 LavPRdi 278 (414)
T PRK13940 272 ISIPQAL 278 (414)
T ss_pred eCCCCCC
Confidence 7665555
|
|
| >PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=81.14 E-value=6.8 Score=34.03 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=45.3
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--C--------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--G-------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 141 (470)
||||+++.+ |....+..+.+++.+.+ ++|.++....+.. .......+.|++++... .
T Consensus 1 m~ki~vl~s-----g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 69 (200)
T PRK05647 1 MKRIVVLAS-----GNGSNLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFD 69 (200)
T ss_pred CceEEEEEc-----CCChhHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhH
Confidence 478999885 44467788888888765 5666544332221 12444566788776522 1
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||++++..
T Consensus 70 ~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 70 AALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHhCcCEEEhHH
Confidence 12334568999998853
|
|
| >PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 | Back alignment and domain information |
|---|
Probab=80.97 E-value=4.8 Score=33.07 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=32.6
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|||+++.......|. ...+..+++.+.+.|+++.++-...
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 799999987766665 6888889999999999999997554
|
5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 470 | ||||
| 2jjm_A | 394 | Crystal Structure Of A Family Gt4 Glycosyltransfera | 6e-11 | ||
| 3mbo_A | 414 | Crystal Structure Of The Glycosyltransferase Babsha | 8e-11 | ||
| 2xmp_A | 416 | Crystal Structure Of Trehalose Synthase Tret Mutant | 1e-04 | ||
| 2x6q_A | 416 | Crystal Structure Of Trehalose Synthase Tret From P | 1e-04 | ||
| 3s28_A | 816 | The Crystal Structure Of Sucrose Synthase-1 In Comp | 4e-04 |
| >pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. Length = 394 | Back alignment and structure |
|
| >pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate Length = 414 | Back alignment and structure |
|
| >pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a From P.Horishiki In Complex With Udp Length = 416 | Back alignment and structure |
|
| >pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P. Horikoshi Length = 416 | Back alignment and structure |
|
| >pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex With A Breakdown Product Of The Udp-Glucose Length = 816 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 7e-38
Identities = 79/432 (18%), Positives = 150/432 (34%), Gaps = 56/432 (12%)
Query: 51 KKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110
K + + V +I K+ L + V+ G +L L LLR +G + W
Sbjct: 20 KSIIGEEEVSKIQEKAEKLKGRS---FVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWF 76
Query: 111 TIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL----------KADLIVLNTAV 160
I+ P+E V + + + ++ + +E D ++++
Sbjct: 77 VIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDPQ 136
Query: 161 AGKWLDAVLKEDVPRVLPNVLWWIHEM--RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218
L ++ P + W H + ++++ I H+
Sbjct: 137 PA-ALIEFYEKKSPWL-----WRCHIDLSSPNREFWEFLRRFVEKYDRYI-FHLPEYVQP 189
Query: 219 NRTRERLRIKMPDTYVVHLG---NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275
R + ++ S++ +E+ + + + + E V E +
Sbjct: 190 ELDRNKAV-------IMPPSIDPLSEKNVELKQTEILR------ILERFDVDPEKPIITQ 236
Query: 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS----DMNAQTKFESELRNY 331
++ KG + + + E ++P V +++G D FE LR
Sbjct: 237 VSRFDPWKGIFDVIEIYRKVKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKI 289
Query: 332 VMQKKIQDRVHFVNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 390
++ + + V + A DV++Q S E FG EAM PV+G A
Sbjct: 290 GEDYDVKVLTNLIGVHAREVNAFQRASDVILQMS--IREGFGLTVTEAMWKGKPVIGRAV 347
Query: 391 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 450
GG +V+G TG L E + ++ L H E MG + ERV++ F
Sbjct: 348 GGIKFQIVDGETGFLVRDANE----AVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKH 403
Query: 451 AERIAVVLKEVL 462
ER +L +
Sbjct: 404 MERYLDILNSLG 415
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 61/322 (18%), Positives = 124/322 (38%), Gaps = 33/322 (10%)
Query: 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVL----WWIHEMRGHYFKLDYVKHLPLVAG 205
D++ ++ A+ + K+ + + V I + + ++ +
Sbjct: 99 NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSD 158
Query: 206 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265
+ + N T E ++ D V+ + + + +++ G
Sbjct: 159 VVT---AVSHSLINETHELVKPN-KDIQTVYNFIDERVYFKRD--------MTQLKKEYG 206
Query: 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFE 325
+ + + I++ + K + +F + + + +++G
Sbjct: 207 ISESEKILIHISNFRKVKRVQDVVQAFAKIVTEVD--------AKLLLVGD-----GPEF 253
Query: 326 SELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385
+ V I+DRV F+ K VA LA D+++ S E FG + +EAMA +P
Sbjct: 254 CTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLS--EKESFGLVLLEAMACGVPC 311
Query: 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 445
+GT GG E++ +G TG L VG T +A ++L E MG+R E V E F
Sbjct: 312 IGTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQF 369
Query: 446 QEHHMAERIAVVLKEVLKKSKS 467
+ + + + +VL+ K+
Sbjct: 370 RSEKIVSQYETIYYDVLRDDKN 391
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 16/206 (7%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
RE R+ G++ + L + S KG D + + E + + +
Sbjct: 183 REIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPE-------SLRHNTLLFVVG 235
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376
+ + + ++ VHF + V+ +AA D+L+ + + E G + +
Sbjct: 236 QDKPR-----KFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPA--YQEAAGIVLL 288
Query: 377 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 436
EA+ LPVL TA G + + G + L + + K T R+ +
Sbjct: 289 EAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAEN 347
Query: 437 GYERVKEIFQEHHMAERIAVVLKEVL 462
+ + E+ A ++ L
Sbjct: 348 ARHYADT-QDLYSLPEKAADIITGGL 372
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 32/263 (12%)
Query: 211 HVTA--EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268
+T +Y R + P + G ++V A + R+ LG +
Sbjct: 143 VLTYISQYTLRRFKSAFGSH-PTFEHLPSG-----VDVKRFTPATPEDKSATRKKLGFTD 196
Query: 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 328
+ A + + KGQD + +++ + P +I+GS ++ES L
Sbjct: 197 TTPVIACNSRLVPRKGQDSLI----KAMPQVIA---ARPDAQLLIVGSG-----RYESTL 244
Query: 329 RNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLV-----QNSQAWGECFGRITIEAMAF 381
R + V F+ + + LAA D+ + E G + +EA A
Sbjct: 245 RRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQAC 302
Query: 382 QLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441
+PV+ +GG E V TGL+ L++ +++L RR MG G V
Sbjct: 303 GVPVIAGTSGGAPETVTPA-TGLVVEGSDVD--KLSELLIELLDDPIRRAAMGAAGRAHV 359
Query: 442 KEIFQEHHMAERIAVVLKEVLKK 464
+ + M ER+ +L+ +K
Sbjct: 360 EAEWSWEIMGERLTNILQSEPRK 382
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 15/216 (6%)
Query: 254 RVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI 313
E R LG+ + A + + KG + + + + ++ L V +I
Sbjct: 227 DRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRV-----II 281
Query: 314 IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT---VAPYLAAIDVLVQNSQAWGEC 370
G + R+ + ++ R+ F+ + A D++ S + E
Sbjct: 282 CGGPSGPNATPD-TYRHMAEELGVEKRIRFL-DPRPPSELVAVYRAADIVAVPS--FNES 337
Query: 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 430
FG + +EA A PV+ GG V G TGLL A + L E R
Sbjct: 338 FGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPH--AWADALATLLDDDETR 395
Query: 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 466
+ MG+ E + F A +++ + + +
Sbjct: 396 IRMGEDAVEHART-FSWAATAAQLSSLYNDAIANEN 430
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Length = 166 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 5e-19
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 21/172 (12%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
K Q + + + L K K + ++ G E +++ + ++
Sbjct: 15 KNQSVLIKAV----ALSKYK----QDIVLLLKGKG-----PDEKKIKLLAQKLGVKAEFG 61
Query: 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLGTAAGGTTEIVVNGT 401
FVN + L + V + E +EA++ + PV+ + T
Sbjct: 62 FVNSN-ELLEILKTCTLYVHAANV--ESEAIACLEAISVGIVPVIANSPLSATRQFALDE 118
Query: 402 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 453
L P L+ I + R M + + + +
Sbjct: 119 RSLFEP---NNAKDLSAKIDWWLENKLERERMQNEYAKSALN-YTLENSVIQ 166
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 1e-18
Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 25/229 (10%)
Query: 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307
E+ + V + L + + +LF + + R K + + ++ L
Sbjct: 551 EELLYSDVENKEHLCVLKDKKKPILFTM-ARLDRVKNLSGLVEWYGKNTRL-------RE 602
Query: 308 SVHAVIIG------SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAP-------YL 354
+ V++G S N + ++ + + + K+ + +++ +
Sbjct: 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYIC 662
Query: 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV--GKEG 412
VQ + E FG +EAM LP T GG EI+V+G +G G +
Sbjct: 663 DTKGAFVQPA--LYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQA 720
Query: 413 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 461
LA K + K G +R++E + ++R+ +
Sbjct: 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 23/183 (12%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRV 341
KG + L +L + P V +I+G D + + +L +
Sbjct: 222 KGMAVLL----AALPKLVA---RFPDVEILIVGRGDEDELREQAGDLA---------GHL 265
Query: 342 HFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 399
F+ + T A + + DV GE FG + +EAMA V+ + ++ +
Sbjct: 266 RFLGQVDDATKASAMRSADVYCAPHL-GGESFGIVLVEAMAAGTAVVASDLDAFRRVLAD 324
Query: 400 GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459
G G L PV +A ++ + + R R ERV + ++ +I V +
Sbjct: 325 GDAGRLVPVDDAD--GMAAALIGILEDDQLRAGYVARASERVHR-YDWSVVSAQIMRVYE 381
Query: 460 EVL 462
V
Sbjct: 382 TVS 384
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Length = 413 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 5e-18
Identities = 50/323 (15%), Positives = 99/323 (30%), Gaps = 30/323 (9%)
Query: 166 DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225
D V+ + P V+ N L + + + YV + + +W + +
Sbjct: 83 DIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVS-------KNIRENLWWIFSHPKVV 135
Query: 226 RI----KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281
+ K + + + G + V+ K + L N+D+LF +N +
Sbjct: 136 GVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNMNRNTA 195
Query: 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341
K D+++ + + + K+ D+++ E +++
Sbjct: 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKI 255
Query: 342 HFVNKTLT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV 398
LT V A DV+V S GE FG + E P++ +A GG +
Sbjct: 256 MINRTVLTDERVDMMYNACDVIVNCS--SGEGFGLCSAEGAVLGKPLIISAVGGADDYFS 313
Query: 399 NGTTGLLHPVGKEGITPL--------------AKNIVKLATHVERRLTMGKRGYERVKEI 444
+ P + + R GKR + VK
Sbjct: 314 GDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEKNRKEYGKRVQDFVKTK 373
Query: 445 FQEHHMAERIAVVLKEVLKKSKS 467
++ I +L+
Sbjct: 374 PTWDDISSDIIDFFNSLLRVESR 396
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 19/244 (7%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLFLH 290
V+ G + + + + K + +++ LG +L I + SR K +
Sbjct: 225 VIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMEL--PAIIASSRLDQKKNHYGLVE 282
Query: 291 SFYESLELIKEKKLEV----PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF--- 343
++ ++ EL + L + + + ++ + + +V
Sbjct: 283 AYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPL 342
Query: 344 VNKTLTVAPY---LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG 400
++ Y + V S + E FG +EAMA LP + T GG EI+ G
Sbjct: 343 NSQQELAGCYAYLASKGSVFALTS--FYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGG 400
Query: 401 TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460
G+L +A+ ++K E ++G +RV+E + A V++E
Sbjct: 401 KYGVLVDPEDPE--DIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQE 458
Query: 461 VLKK 464
+ +
Sbjct: 459 IADR 462
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Length = 177 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-16
Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 28/181 (15%)
Query: 267 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG--SDMNAQTKF 324
+ + +N + K +L L F + ++++KL I+G S + ++
Sbjct: 20 KCYGDFWLSVNRIYPEKRIELQLEVFKK----LQDEKL-------YIVGWFSKGDHAERY 68
Query: 325 ESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 382
++ K D V F+ + + L+ + E FG IEAMA
Sbjct: 69 ARKIM-----KIAPDNVKFLGSVSEEELIDLYSRCKGLLCTA--KDEDFGLTPIEAMASG 121
Query: 383 LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442
PV+ GG E V+N TG L + + K++ + ++ K + R K
Sbjct: 122 KPVIAVNEGGFKETVINEKTGYLVNADVNE---IIDAMKKVSKNPDK---FKKDCFRRAK 175
Query: 443 E 443
E
Sbjct: 176 E 176
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Length = 413 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 7e-14
Identities = 49/399 (12%), Positives = 104/399 (26%), Gaps = 52/399 (13%)
Query: 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-- 133
L++ ++ + GG ++L K I ++ K
Sbjct: 51 LLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPKDLQSFKSFKYVMPEED 110
Query: 134 ----VQVISAKGQETINTAL-KADLIVLN---TAVAGKWLDAVLKEDVPRVLPNVLWWIH 185
+Q++ + + K D+ + TA A + + + + +L+ I
Sbjct: 111 KDFALQIVPFNDRYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQ 170
Query: 186 EMRGHYFKLDYVKHLPLVAGAMIDSHVTA--EYWKNRTRERLRIKMPDTYVVHLGNSKEL 243
+ +++ L + + D Y + L
Sbjct: 171 DFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTL 230
Query: 244 MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303
D K + +L SV R L + E+L++ +K
Sbjct: 231 KNYINDKRQKEKI--------------ILVYGRPSVKR-NAFTLIV----EALKIFVQKY 271
Query: 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLV 361
+ +G + ++ + K A L + +
Sbjct: 272 DRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGI 319
Query: 362 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421
+ +E F L V+ + L + E +A+ +V
Sbjct: 320 SLMIS--PHPSYPPLEMAHFGLRVITNKYENKDLSNWHSNIVSLEQLNPEN---IAETLV 374
Query: 422 KLATHVERRLTMGKRGYERVKEI--FQEHHMAERIAVVL 458
+L R K + I F E + I L
Sbjct: 375 ELCMSFNNRDVDKKESSNMMFYINEFNEFSFIKEIEEKL 413
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Length = 342 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 19/134 (14%)
Query: 339 DRVHFVNK--TLTVAPYLAAIDVLV--------QNSQAWGECFGRITIEAMAFQLPVLGT 388
V + + LA+ ++ W E + EA PV+GT
Sbjct: 212 STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGT 271
Query: 389 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 448
G EIV + + + A L ++
Sbjct: 272 GNGCLAEIVPSVGEVVGYGTD---------FAPDEARRTLAGLPASDEVRRAAVRLWGHV 322
Query: 449 HMAERIAVVLKEVL 462
+AER + +L
Sbjct: 323 TIAERYVEQYRRLL 336
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 55/401 (13%), Positives = 118/401 (29%), Gaps = 112/401 (27%)
Query: 27 ISTAIAFFIRAALDPCDRHLEVSDKKRVQSQ-----SVPRIATKSSPLSFMKSKLVLLVS 81
+ + I R ++E D+ +Q +V R+ P ++ L+ L
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYLKLRQALLELRP 149
Query: 82 HE-LSLSGGP------LLLMELAF--LLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR 132
+ + + G + L + + K+ W+ ++ + + V+ L+ K+ +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQ 208
Query: 133 GVQVISAKGQETINTALKAD------------------LIVLNTAVAGKWL--------- 165
+++ + N L+ L+VL V
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCK 267
Query: 166 ------DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHL------------------- 200
+ + + + H D VK L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 201 -PLV---AGAMI-DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRV 255
P I D T + WK+ ++L + ++ + L E ++ + V
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVL-EPAEYRKMFDRLS---V 380
Query: 256 LREHV----------------RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 299
+ + V N+ ++++ + K + + S Y LEL
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIY--LEL- 435
Query: 300 KEKKLEVPSVHAVIIGSDMNAQTKFESE------LRNYVMQ 334
K K ++H I+ N F+S+ L Y
Sbjct: 436 KVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYS 475
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 3c48_A | 438 | Predicted glycosyltransferases; retaining glycosyl | 100.0 | |
| 3fro_A | 439 | GLGA glycogen synthase; glycosyltransferase family | 100.0 | |
| 2x6q_A | 416 | Trehalose-synthase TRET; biosynthetic protein; 2.2 | 100.0 | |
| 3okp_A | 394 | GDP-mannose-dependent alpha-(1-6)-phosphatidylino | 100.0 | |
| 2r60_A | 499 | Glycosyl transferase, group 1; rossmann-fold; 1.80 | 100.0 | |
| 2jjm_A | 394 | Glycosyl transferase, group 1 family protein; anth | 100.0 | |
| 1rzu_A | 485 | Glycogen synthase 1; glycosyl-transferase, GT-B fo | 100.0 | |
| 3oy2_A | 413 | Glycosyltransferase B736L; rossmann fold, GDP-mann | 100.0 | |
| 2qzs_A | 485 | Glycogen synthase; glycosyl-transferase, GT-B fold | 100.0 | |
| 2iw1_A | 374 | Lipopolysaccharide core biosynthesis protein RFAG; | 100.0 | |
| 3vue_A | 536 | GBSS-I, granule-bound starch synthase 1, chloropla | 100.0 | |
| 2gek_A | 406 | Phosphatidylinositol mannosyltransferase (PIMA); G | 100.0 | |
| 2iuy_A | 342 | Avigt4, glycosyltransferase; antibiotics, family G | 100.0 | |
| 3s28_A | 816 | Sucrose synthase 1; glycosyltransferase, sucrose m | 100.0 | |
| 2x0d_A | 413 | WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe | 100.0 | |
| 2hy7_A | 406 | Glucuronosyltransferase GUMK; glycosyltransferases | 100.0 | |
| 1vgv_A | 384 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 100.0 | |
| 3beo_A | 375 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a | 99.98 | |
| 1uqt_A | 482 | Alpha, alpha-trehalose-phosphate synthase; glycosy | 99.98 | |
| 3nb0_A | 725 | Glycogen [starch] synthase isoform 2; glycogen syn | 99.97 | |
| 2bfw_A | 200 | GLGA glycogen synthase; glycosyltransferase family | 99.97 | |
| 2xci_A | 374 | KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci | 99.96 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 99.96 | |
| 3t5t_A | 496 | Putative glycosyltransferase; GTB fold, pseudoglyc | 99.96 | |
| 1v4v_A | 376 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t | 99.96 | |
| 2f9f_A | 177 | First mannosyl transferase (WBAZ-1); alpha-beta pr | 99.94 | |
| 3dzc_A | 396 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.9 | |
| 3otg_A | 412 | CALG1; calicheamicin, TDP, structural genomics, PS | 99.89 | |
| 3ot5_A | 403 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.88 | |
| 3s2u_A | 365 | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape | 99.87 | |
| 3rhz_A | 339 | GTF3, nucleotide sugar synthetase-like protein; gl | 99.85 | |
| 4fzr_A | 398 | SSFS6; structural genomics, PSI-biology, protein s | 99.85 | |
| 2iyf_A | 430 | OLED, oleandomycin glycosyltransferase; antibiotic | 99.84 | |
| 3tsa_A | 391 | SPNG, NDP-rhamnosyltransferase; glycosyltransferas | 99.82 | |
| 3oti_A | 398 | CALG3; calicheamicin, TDP, structural genomics, PS | 99.8 | |
| 3ia7_A | 402 | CALG4; glycosysltransferase, calicheamicin, enediy | 99.8 | |
| 3rsc_A | 415 | CALG2; TDP, enediyne, structural genomics, PSI-2, | 99.75 | |
| 2p6p_A | 384 | Glycosyl transferase; X-RAY-diffraction,urdamycina | 99.72 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 99.65 | |
| 4hwg_A | 385 | UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc | 99.65 | |
| 2yjn_A | 441 | ERYCIII, glycosyltransferase; transferase, cytochr | 99.61 | |
| 2iya_A | 424 | OLEI, oleandomycin glycosyltransferase; carbohydra | 99.54 | |
| 3h4t_A | 404 | Glycosyltransferase GTFA, glycosyltransferase; van | 99.5 | |
| 1l5w_A | 796 | Maltodextrin phosphorylase; enzymatic catalysis, s | 99.48 | |
| 2c4m_A | 796 | Glycogen phosphorylase; allosteric control, phosph | 99.46 | |
| 4amg_A | 400 | Snogd; transferase, polyketide biosynthesis, GT1 f | 99.46 | |
| 1iir_A | 415 | Glycosyltransferase GTFB; rossmann fold; 1.80A {Am | 99.41 | |
| 2o6l_A | 170 | UDP-glucuronosyltransferase 2B7; drug metabolism, | 99.33 | |
| 1rrv_A | 416 | Glycosyltransferase GTFD; GT-B, glycosyltransferas | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 2gj4_A | 824 | Glycogen phosphorylase, muscle form; transferase; | 99.29 | |
| 3hbm_A | 282 | UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je | 98.68 | |
| 3l7i_A | 729 | Teichoic acid biosynthesis protein F; GT-B fold, m | 98.04 | |
| 1ygp_A | 879 | Yeast glycogen phosphorylase; phosphorylated form, | 97.88 | |
| 2c1x_A | 456 | UDP-glucose flavonoid 3-O glycosyltransferase; WIN | 97.87 | |
| 3tov_A | 349 | Glycosyl transferase family 9; structural genomics | 97.72 | |
| 2pq6_A | 482 | UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl | 97.71 | |
| 3hbf_A | 454 | Flavonoid 3-O-glucosyltransferase; glycosyltransfe | 97.69 | |
| 2acv_A | 463 | Triterpene UDP-glucosyl transferase UGT71G1; glyco | 97.42 | |
| 2gt1_A | 326 | Lipopolysaccharide heptosyltransferase-1; GT-B fol | 97.34 | |
| 1psw_A | 348 | ADP-heptose LPS heptosyltransferase II; structural | 97.23 | |
| 2vch_A | 480 | Hydroquinone glucosyltransferase; glycosyltransfer | 97.06 | |
| 2jzc_A | 224 | UDP-N-acetylglucosamine transferase subunit ALG13; | 97.03 | |
| 1xv5_A | 401 | AGT, DNA alpha-glucosyltransferase; HET: DNA CME U | 94.85 | |
| 2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase | 91.46 | |
| 3q0i_A | 318 | Methionyl-tRNA formyltransferase; structural genom | 90.31 | |
| 3tqq_A | 314 | Methionyl-tRNA formyltransferase; protein synthesi | 87.96 | |
| 4gi5_A | 280 | Quinone reductase; protein structure initiative, F | 87.72 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 87.32 | |
| 1k68_A | 140 | Phytochrome response regulator RCPA; phosphorylate | 87.09 | |
| 3heb_A | 152 | Response regulator receiver domain protein (CHEY); | 84.43 | |
| 2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossm | 84.26 | |
| 3auf_A | 229 | Glycinamide ribonucleotide transformylase 1; struc | 84.1 | |
| 3rfo_A | 317 | Methionyl-tRNA formyltransferase; structural genom | 84.09 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 84.05 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 83.52 | |
| 2a5l_A | 200 | Trp repressor binding protein WRBA; APC5760, PA094 | 83.24 | |
| 3ilh_A | 146 | Two component response regulator; NYSGXRC, PSI-II, | 83.1 | |
| 3cg4_A | 142 | Response regulator receiver domain protein (CHEY-; | 83.03 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 82.66 | |
| 3h5i_A | 140 | Response regulator/sensory box protein/ggdef domai | 82.28 | |
| 2pln_A | 137 | HP1043, response regulator; signaling protein; 1.8 | 82.18 | |
| 2d1p_A | 140 | TUSD, hypothetical UPF0163 protein YHEN; tRNA modi | 82.15 | |
| 3grc_A | 140 | Sensor protein, kinase; protein structure initiati | 82.06 | |
| 1k66_A | 149 | Phytochrome response regulator RCPB; CHEY homologu | 81.95 | |
| 2hy5_A | 130 | Putative sulfurtransferase DSRE; DSRE, DSRF, sulfu | 81.84 | |
| 4ds3_A | 209 | Phosphoribosylglycinamide formyltransferase; struc | 81.28 | |
| 2vzf_A | 197 | NADH-dependent FMN reductase; oxidoreductase; 2.50 | 81.03 | |
| 3h1g_A | 129 | Chemotaxis protein CHEY homolog; sulfate-bound CHE | 80.89 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 80.82 | |
| 1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator t | 80.57 | |
| 3av3_A | 212 | Phosphoribosylglycinamide formyltransferase; struc | 80.32 |
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=369.86 Aligned_cols=365 Identities=18% Similarity=0.206 Sum_probs=276.5
Q ss_pred cccccEEEEEeeccCC---------CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC
Q 012132 71 FMKSKLVLLVSHELSL---------SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~---------~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (470)
..+|||||+++..++| ||.++++.+++++|.++||+|++++......... ......++.++....
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~v~v~~~~~ 90 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE------IVRVAENLRVINIAA 90 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS------EEEEETTEEEEEECC
T ss_pred CcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc------cccccCCeEEEEecC
Confidence 4467899999987654 6778999999999999999999999654321100 000112343332210
Q ss_pred --------------h----hhH----Hhhc-CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc------
Q 012132 142 --------------Q----ETI----NTAL-KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------ 192 (470)
Q Consensus 142 --------------~----~~~----~~~~-~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------ 192 (470)
. ..+ .+.. +||+||+|..........+.+. ...|++++.|+......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~ 166 (438)
T 3c48_A 91 GPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDL----WRIPLIHTAHTLAAVKNSYRDDS 166 (438)
T ss_dssp SCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSSCHHHHSCC----
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHH----cCCCEEEEecCCccccccccccc
Confidence 0 011 1222 5999999975433222211111 12578888998632110
Q ss_pred --------hhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHc
Q 012132 193 --------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (470)
Q Consensus 193 --------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (470)
.......+...+.+++.|....+.+.+ .++++..++.+||||+|.+.|.+.... .++.+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~g~~~~k~~vi~ngvd~~~~~~~~~~-----~~~~~r~~~ 237 (438)
T 3c48_A 167 DTPESEARRICEQQLVDNADVLAVNTQEEMQDLMH----HYDADPDRISVVSPGADVELYSPGNDR-----ATERSRREL 237 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHH----HHCCCGGGEEECCCCCCTTTSCCC---------CHHHHHHT
T ss_pred CCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHH----HhCCChhheEEecCCccccccCCcccc-----hhhhhHHhc
Confidence 001123345677888888877666553 578888899999999999887654211 124578899
Q ss_pred CCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCC--ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE
Q 012132 265 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (470)
Q Consensus 265 ~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~--~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~ 342 (470)
+++++.++|+++||+.+.||++.+++|++.+.+ ++| +++|+|+|+... ..++.+.++++++++++.++|+
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~p~~~~~l~i~G~~~~-~g~~~~~l~~~~~~~~l~~~v~ 309 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFD-------RDPDRNLRVIICGGPSG-PNATPDTYRHMAEELGVEKRIR 309 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHH-------HCTTCSEEEEEECCBC-------CHHHHHHHHTTCTTTEE
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHh-------hCCCcceEEEEEeCCCC-CCcHHHHHHHHHHHcCCCCcEE
Confidence 998899999999999999999999999998865 334 899999998110 0057889999999999999999
Q ss_pred Eeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHH
Q 012132 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 343 ~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
|+|++ +++.++|+.||++|+||. .|+||++++|||+||+|||+++.|+..|++.++.+|++++++| +++++++|
T Consensus 310 ~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i 385 (438)
T 3c48_A 310 FLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS--PHAWADAL 385 (438)
T ss_dssp EECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCC--HHHHHHHH
T ss_pred EcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCC--HHHHHHHH
Confidence 99997 789999999999999998 8999999999999999999999999999999999999999988 99999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhhhc
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 467 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~~~ 467 (470)
.++++|++.++++++++++++.+ |+|+.+++++.++|++++.+.+.
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 386 ATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999988 99999999999999999987543
|
| >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=370.12 Aligned_cols=366 Identities=16% Similarity=0.111 Sum_probs=281.7
Q ss_pred cccEEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh----------hhhhhhcceeeEec
Q 012132 73 KSKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----------EHKMWDRGVQVISA 139 (470)
Q Consensus 73 ~~~kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 139 (470)
++||||++++.+++ ||.++++.+|+++|+++||+|+|+++..+.........+ .......|+.++..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 46899999988655 777999999999999999999999965543221000000 00002345555443
Q ss_pred CC----------------hh----------hHHh-----hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec
Q 012132 140 KG----------------QE----------TINT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (470)
Q Consensus 140 ~~----------------~~----------~~~~-----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 188 (470)
.. .. .+.+ ..+||+||+|+.........+.+. ...|+++++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~v~~~h~~~ 156 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY----FKIPAVFTIHRLN 156 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH----HCCCEEEEESCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhc----cCCCEEEEecccc
Confidence 22 00 1111 459999999986544332222221 2257899999875
Q ss_pred cccch------------------hhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhH
Q 012132 189 GHYFK------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN 250 (470)
Q Consensus 189 ~~~~~------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 250 (470)
...+. ......+...+.+++.|....+. ....++.+..++.+||||+|.+.|.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~----~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 232 (439)
T 3fro_A 157 KSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLID----EWGFFRNFEGKITYVFNGIDCSFWNESYLT 232 (439)
T ss_dssp CCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHH----THHHHGGGTTSEEECCCCCCTTTSCGGGSC
T ss_pred cccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHH----HhhhhhhcCCceeecCCCCCchhcCccccc
Confidence 43211 11223344667788888877655 233556788899999999999998776322
Q ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccC--CceEEEEEeCCCCcChHHHHH
Q 012132 251 VAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEV--PSVHAVIIGSDMNAQTKFESE 327 (470)
Q Consensus 251 ~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~--~~~~l~ivG~g~~~~~~~~~~ 327 (470)
......+..+|+++|++++ ++|+++||+. +.||++.+++|++.+.+ +. ++++|+|+|+|.. .+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~ 301 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGW 301 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHH
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHH
Confidence 2233447889999999877 9999999999 99999999999998855 33 7999999999841 34589
Q ss_pred HHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeee
Q 012132 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 405 (470)
Q Consensus 328 l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l 405 (470)
+++++++++ +.+.|.|+. +++.++|+.||++|+||. .|+||++++|||+||+|||+|+.||..|++.++ +|++
T Consensus 302 l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~ 376 (439)
T 3fro_A 302 ARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGIL 376 (439)
T ss_dssp HHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEE
T ss_pred HHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEE
Confidence 999999988 788899954 789999999999999999 899999999999999999999999999999877 9999
Q ss_pred ecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 406 HPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 406 ~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
++++| +++++++|.++++ |++.++++++++++++ ++|||+.+++++.++|++++++.
T Consensus 377 ~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 377 VKAGD--PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp ECTTC--HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCB
T ss_pred eCCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhh
Confidence 99998 9999999999999 9999999999999999 66999999999999999988654
|
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-46 Score=364.67 Aligned_cols=358 Identities=18% Similarity=0.210 Sum_probs=271.0
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC---------
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------- 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 141 (470)
.|++|||+++++....||+++++.+++++|.++||+|++++.............+...+ .+...+....
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL--QGNESLKLTEEMKELYLNV 114 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHH--TTCCSCCCCHHHHHHHHHH
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceee--cccccccccHHHHHHHHHH
Confidence 46789999999987678889999999999999999999998654321111111111111 1111111110
Q ss_pred ---hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch---hhhhccccccccee-eeehhhH
Q 012132 142 ---QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---LDYVKHLPLVAGAM-IDSHVTA 214 (470)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~---~~~~~~~~~~~~~~-~~s~~~~ 214 (470)
.....+..+||+||+|++....+.. .... . .|++++.|+....... ....+.+...+.++ +.+....
T Consensus 115 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~~-~~~~----~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~ 188 (416)
T 2x6q_A 115 NRENSKFIDLSSFDYVLVHDPQPAALIE-FYEK----K-SPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQ 188 (416)
T ss_dssp HHHHHHSSCGGGSSEEEEESSTTGGGGG-GSCC----C-SCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGSC
T ss_pred HHHHHHHHhhcCCCEEEEeccchhhHHH-HHHh----c-CCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHHH
Confidence 1112234689999999866543322 1111 1 6788999976433211 11222334445544 4443332
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+ +++..++.+||||+|...+.+.... ...+..+|++++++++.++++++||+.+.||++.+++|++.
T Consensus 189 ~----------~~~~~~~~vi~ngvd~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 255 (416)
T 2x6q_A 189 P----------ELDRNKAVIMPPSIDPLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRK 255 (416)
T ss_dssp T----------TSCTTTEEECCCCBCTTSTTTSCCC---HHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHH
T ss_pred h----------hCCccceEEeCCCCChhhhcccccC---hhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHH
Confidence 1 2344789999999998766432111 11256789999999899999999999999999999999998
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccC-----CHHHHHHhcCEEEEccCCccc
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-----TVAPYLAAIDVLVQNSQAWGE 369 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~-----~~~~~~~~aDv~v~pS~~~~E 369 (470)
+.+ +.|+++|+|+|+|...++.+.+.++++++++++.++|+|+|+.. ++.++|+.||++|+||. .|
T Consensus 256 l~~-------~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E 326 (416)
T 2x6q_A 256 VKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--RE 326 (416)
T ss_dssp HHH-------HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SC
T ss_pred HHH-------hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cC
Confidence 865 45899999999986544456788999999999999999999653 79999999999999999 89
Q ss_pred ccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 370 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 370 ~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
+||++++|||+||+|||+++.||.+|++.++.+|++++ | +++++++|.++++|++.++++++++++++.++|||+.
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 402 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITK 402 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHH
T ss_pred CCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999998 6 9999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEVL 462 (470)
Q Consensus 450 ~~~~~~~~~~~~l 462 (470)
+++++.++|++++
T Consensus 403 ~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 403 HMERYLDILNSLG 415 (416)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999865
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=363.67 Aligned_cols=355 Identities=20% Similarity=0.240 Sum_probs=282.7
Q ss_pred cccccEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------
Q 012132 71 FMKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------- 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (470)
+|++|||+++++.+++ ||+++++.++++.| +||+|+|++........ .......++.++....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 72 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEA------HAYDKTLDYEVIRWPRSVMLPTP 72 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHH------HHHHTTCSSEEEEESSSSCCSCH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccch------hhhccccceEEEEccccccccch
Confidence 4678999999998764 67799999999999 69999999976543110 1111345566655332
Q ss_pred -----hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc-----chhhhhcccccccceeeeeh
Q 012132 142 -----QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVAGAMIDSH 211 (470)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-----~~~~~~~~~~~~~~~~~~s~ 211 (470)
...+.+..+||+||+|......++....+.. ..++++++.|+....+ ........+...+.+++.|.
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 149 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQA---GASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQ 149 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHT---TCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCH
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhc---CCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCH
Confidence 2355567899999999866554444443321 1145788889753222 11223444567788888888
Q ss_pred hhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHH
Q 012132 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (470)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a 291 (470)
...+.+.+ .++ ...++.+||||+|.+.|.+... ..+..+|++++++++.++++++||+.+.||++.+++|
T Consensus 150 ~~~~~~~~----~~~-~~~~~~vi~ngv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a 219 (394)
T 3okp_A 150 YTLRRFKS----AFG-SHPTFEHLPSGVDVKRFTPATP-----EDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKA 219 (394)
T ss_dssp HHHHHHHH----HHC-SSSEEEECCCCBCTTTSCCCCH-----HHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHH
T ss_pred HHHHHHHH----hcC-CCCCeEEecCCcCHHHcCCCCc-----hhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHH
Confidence 88776665 444 4578999999999998876221 1257789999999888999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcc-
Q 012132 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG- 368 (470)
Q Consensus 292 ~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~- 368 (470)
++.+.+ +.++++|+|+|+| ++.+.+++++ .++.++|+|+|++ +++.++|+.||++|+||. .
T Consensus 220 ~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~--~~ 283 (394)
T 3okp_A 220 MPQVIA-------ARPDAQLLIVGSG-----RYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR--TR 283 (394)
T ss_dssp HHHHHH-------HSTTCEEEEECCC-----TTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC--CB
T ss_pred HHHHHh-------hCCCeEEEEEcCc-----hHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc--cc
Confidence 998865 4589999999998 5778888888 5667899999997 899999999999999999 7
Q ss_pred ------cccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 369 ------ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 369 ------E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
|+||++++|||++|+|||+++.|+..|++.++ +|++++++| +++++++|.++++|++.++++++++++++.
T Consensus 284 ~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 360 (394)
T 3okp_A 284 GGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDPIRRAAMGAAGRAHVE 360 (394)
T ss_dssp GGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 999999998 999999999999999999999999999999
Q ss_pred HHcChhHHHHHHHHHHHHHHHhh
Q 012132 443 EIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
++|+|+.+++++.++|+++..+.
T Consensus 361 ~~~s~~~~~~~~~~~~~~~~r~~ 383 (394)
T 3okp_A 361 AEWSWEIMGERLTNILQSEPRKL 383 (394)
T ss_dssp HHTBHHHHHHHHHHHHHSCCC--
T ss_pred HhCCHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999987543
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=376.86 Aligned_cols=372 Identities=15% Similarity=0.150 Sum_probs=278.3
Q ss_pred cccEEEEEeeccCC-------------CchhHHHHHHHHHHHhCCceEEEEecCCCCCc-hhHHHhhhhhhhhcceeeEe
Q 012132 73 KSKLVLLVSHELSL-------------SGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVIS 138 (470)
Q Consensus 73 ~~~kIl~v~~~~~~-------------~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 138 (470)
++|||+++++.+.| ||+++++.+++++|.++||+|+|++....... ......+.......|+.++.
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 85 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVR 85 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEE
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEE
Confidence 35899999986533 66689999999999999999999996543211 00000000000123555543
Q ss_pred cCC---------------------hhhHHhh--cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch--
Q 012132 139 AKG---------------------QETINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-- 193 (470)
Q Consensus 139 ~~~---------------------~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-- 193 (470)
... ...+.+. .+||+||+|..........+.+. ...|++++.|+.......
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~----~~~p~v~~~H~~~~~~~~~~ 161 (499)
T 2r60_A 86 IPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI----KGLPFTFTGHSLGAQKMEKL 161 (499)
T ss_dssp ECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HCCCEEEECSSCHHHHHHTT
T ss_pred ecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh----cCCcEEEEccCcccccchhh
Confidence 221 1122233 48999999985433322222211 125788999986321110
Q ss_pred --------------------hhhhcccccccceeeeehhhHHHHHHhhhhh--hc-c----CCCceEEEecCCchhhhhH
Q 012132 194 --------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRER--LR-I----KMPDTYVVHLGNSKELMEV 246 (470)
Q Consensus 194 --------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~-~----~~~~i~vi~ngvd~~~~~~ 246 (470)
......+...+.+++.|....+.+. +. +| + +..++.|||||+|.+.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~----~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~ 237 (499)
T 2r60_A 162 NVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQY----SHDLYRGAVNVEDDDKFSVIPPGVNTRVFDG 237 (499)
T ss_dssp CCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTT----TSGGGTTTCCTTCGGGEEECCCCBCTTTSSS
T ss_pred ccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHH----hhhcccccccccCCCCeEEECCCcChhhcCc
Confidence 0112334566777887877755443 34 56 5 6778999999999998876
Q ss_pred hhhHHHHHHHHHHHHHHcC-----CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCc-
Q 012132 247 AEDNVAKRVLREHVRESLG-----VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA- 320 (470)
Q Consensus 247 ~~~~~~~~~~~~~~r~~~~-----~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~- 320 (470)
.... ..+..+|+++| ++.+.++|+++||+.+.||++.+++|++.+.+..+ ...+++|+|++...
T Consensus 238 ~~~~----~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~------~~~~l~i~G~~~~~~ 307 (499)
T 2r60_A 238 EYGD----KIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQD------KANLVLTLRGIENPF 307 (499)
T ss_dssp CCCH----HHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHH------HCEEEEEESSCSBTT
T ss_pred cchh----hhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCC------CceEEEEECCCCCcc
Confidence 4321 12466788888 77888999999999999999999999998865321 23689999983111
Q ss_pred ---------ChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhc----CEEEEccCCcccccchHHHHHHhcCCCE
Q 012132 321 ---------QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPV 385 (470)
Q Consensus 321 ---------~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (470)
+.+|.++++++++++++.++|+|+|++ +++.++|+.| |++|+||. .|+||++++|||+||+||
T Consensus 308 ~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~Pv 385 (499)
T 2r60_A 308 EDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPA 385 (499)
T ss_dssp TBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCE
T ss_pred cccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCE
Confidence 112388999999999999999999996 8899999999 99999999 899999999999999999
Q ss_pred EecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 386 LGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 386 I~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
|+|+.||.+|++.++.+|++++++| +++++++|.++++|++.++++++++++++.++|||+++++++.++|++++.+.
T Consensus 386 I~s~~~g~~e~v~~~~~g~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 386 VVTRNGGPAEILDGGKYGVLVDPED--PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp EEESSBHHHHHTGGGTSSEEECTTC--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC-
T ss_pred EEecCCCHHHHhcCCceEEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999998764
Q ss_pred h
Q 012132 466 K 466 (470)
Q Consensus 466 ~ 466 (470)
.
T Consensus 464 ~ 464 (499)
T 2r60_A 464 D 464 (499)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-45 Score=354.58 Aligned_cols=349 Identities=19% Similarity=0.228 Sum_probs=268.5
Q ss_pred EEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEec-----------------
Q 012132 78 LLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----------------- 139 (470)
Q Consensus 78 l~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 139 (470)
-+....++. ||+++++.+++++|.++||+|++++...+.... ....++.+...
T Consensus 17 ~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 87 (394)
T 2jjm_A 17 KIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN---------KVYPNIYFHEVTVNQYSVFQYPPYDLAL 87 (394)
T ss_dssp EEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-------------CCCTTEEEECCCCC----CCSCCHHHHH
T ss_pred eeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc---------ccCCceEEEecccccccccccccccHHH
Confidence 344444554 667999999999999999999999965432100 00112221110
Q ss_pred -CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc------cchhhhhcccccccceeeeehh
Q 012132 140 -KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHV 212 (470)
Q Consensus 140 -~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~ 212 (470)
.....+.+..+||+||+|......+...+.+.... ...|++++.|+.... .+.......+...+.+++.|..
T Consensus 88 ~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 166 (394)
T 2jjm_A 88 ASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIG-ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHS 166 (394)
T ss_dssp HHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTT-TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHH
T ss_pred HHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhc-CCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHH
Confidence 01233445689999999976543333322222111 125788999984321 1122233445677888888888
Q ss_pred hHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHH
Q 012132 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSF 292 (470)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~ 292 (470)
..+.+.+ .++. ..++.+||||+|.+.|.+.. +..+|++++++++.++++++||+.+.||++.+++|+
T Consensus 167 ~~~~~~~----~~~~-~~~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~ 233 (394)
T 2jjm_A 167 LINETHE----LVKP-NKDIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAF 233 (394)
T ss_dssp HHHHHHH----HTCC-SSCEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHH
T ss_pred HHHHHHH----hhCC-cccEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHH
Confidence 8766654 3443 57899999999999886542 245778899988889999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccc
Q 012132 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 293 ~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.+.+ + ++++|+|+|+| +..++++++++++++.++|.|+|+.+++.++|+.||++|+||. .|+||
T Consensus 234 ~~l~~-------~-~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~--~e~~~ 298 (394)
T 2jjm_A 234 AKIVT-------E-VDAKLLLVGDG-----PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSE--KESFG 298 (394)
T ss_dssp HHHHH-------S-SCCEEEEECCC-----TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCS--CCSCC
T ss_pred HHHHh-------h-CCCEEEEECCc-----hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccc--cCCCc
Confidence 98854 2 56899999998 5678999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 452 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 452 (470)
++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++.++++++++++++.+.|||+++++
T Consensus 299 ~~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 376 (394)
T 2jjm_A 299 LVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVS 376 (394)
T ss_dssp HHHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHhhh
Q 012132 453 RIAVVLKEVLKKSK 466 (470)
Q Consensus 453 ~~~~~~~~~l~~~~ 466 (470)
+++++|++++.+.+
T Consensus 377 ~~~~~~~~~~~~~~ 390 (394)
T 2jjm_A 377 QYETIYYDVLRDDK 390 (394)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987643
|
| >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=360.99 Aligned_cols=365 Identities=16% Similarity=0.142 Sum_probs=268.7
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh-------------hhh--hhhccee
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL-------------EHK--MWDRGVQ 135 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~ 135 (470)
||||++++.++| ||.++++.+|+++|.++||+|+|++...+..... .... ... ....|+.
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 79 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKCFEFTDLLGEKADLLEVQHERLD 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEEEEESCSSSCCEEEEEEEETTEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccccccc-ccccceeEEEEEecCCeEEEEEEEecCce
Confidence 799999997754 6669999999999999999999999643210000 0000 000 0023555
Q ss_pred eEecCC--------------------------------hhhHH----hhcCCcEEEEcccchhhhHHHHhhhcCCccccc
Q 012132 136 VISAKG--------------------------------QETIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPN 179 (470)
Q Consensus 136 ~~~~~~--------------------------------~~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (470)
++.... ...+. +..+||+||+|+...+.. ...+... .....|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~-~~~~~~~-~~~~~p 157 (485)
T 1rzu_A 80 LLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA-ETPEIP 157 (485)
T ss_dssp EEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS-SSCCCC
T ss_pred EEEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHH-HHHHhhc-ccCCCC
Confidence 543210 01111 256899999998543332 2222221 112368
Q ss_pred eeeEEeeecccc-ch-------------------------hhhhcccccccceeeeehhhHHHHHHhhhhhhc-------
Q 012132 180 VLWWIHEMRGHY-FK-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR------- 226 (470)
Q Consensus 180 ~~~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~------- 226 (470)
+++++|+..... +. ......+...+.++++|....+.+.+. .+|
T Consensus 158 ~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~g~~~~~~~ 234 (485)
T 1rzu_A 158 SLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTA---EFGMGLEGVI 234 (485)
T ss_dssp EEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH---HHHTTCHHHH
T ss_pred EEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhcc---ccCcchHHHH
Confidence 899999863211 00 011122345677888887776555431 123
Q ss_pred -cCCCceEEEecCCchhhhhHhhhH-----------HHHHHHHHHHHHHcCCCCC-CeEEEEEeecccCCCHHHHHHHHH
Q 012132 227 -IKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRNE-DLLFAIINSVSRGKGQDLFLHSFY 293 (470)
Q Consensus 227 -~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~~-~~~i~~vGrl~~~Kg~~~ll~a~~ 293 (470)
.+..++.+||||+|.+.|.+..+. ..+...+..+|+++|++.+ .++|+++||+.+.||++.+++|++
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~ 314 (485)
T 1rzu_A 235 GSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVD 314 (485)
T ss_dssp HTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHH
T ss_pred HhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHH
Confidence 456789999999999988765321 0112235678999999875 679999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-EecccCC-HHHHHHhcCEEEEccCCccccc
Q 012132 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECF 371 (470)
Q Consensus 294 ~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~-~~~~~~~aDv~v~pS~~~~E~~ 371 (470)
.+.+ ++++|+|+|+|++ ++.+.+++++++++ ++|+ |.|+..+ +..+|+.||++|+||. .|+|
T Consensus 315 ~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~ 378 (485)
T 1rzu_A 315 EIVS---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPC 378 (485)
T ss_dssp HHHH---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSS
T ss_pred HHHh---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcEEEecCCCHHHHHHHHhcCCEEEECcc--cCCC
Confidence 8865 6899999999831 36889999999885 6887 7898744 5899999999999999 8999
Q ss_pred chHHHHHHhcCCCEEecCCCCcceeeecC---------ceeeeecCCCCChHHHHHHHHHHH---hCHHHHHHHHHHHHH
Q 012132 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGYE 439 (470)
Q Consensus 372 g~~~lEAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~a~~ 439 (470)
|++++|||+||+|||+|+.||++|++.++ .+|++++++| +++|+++|.+++ +|++.++++++++++
T Consensus 379 ~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~ 456 (485)
T 1rzu_A 379 GLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK 456 (485)
T ss_dssp CSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 8999999998 999999999999 799999999999875
Q ss_pred HHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 440 RVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
+.|||+.+++++.++|++++....
T Consensus 457 ---~~fs~~~~~~~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 457 ---SDVSWEKSAGLYAALYSQLISKGH 480 (485)
T ss_dssp ---CCCBHHHHHHHHHHHHHHHTC---
T ss_pred ---HhCChHHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999987654
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=351.96 Aligned_cols=355 Identities=14% Similarity=0.145 Sum_probs=270.0
Q ss_pred cEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCch-h-H---HHhhhhhhhhccee--eEecCChhhHH
Q 012132 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-E-V---IYSLEHKMWDRGVQ--VISAKGQETIN 146 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~-~---~~~~~~~~~~~~~~--~~~~~~~~~~~ 146 (470)
|||+++++.++. ||.++++.+|+++|.++ |+|++++........ . . ........ ..+. .+.........
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l 77 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV--RGLNEQGFYYSGLSEFI 77 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH--TTCCSTTCCHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc--cccccccchHHHHHHHH
Confidence 799999988776 55589999999999999 999999854331100 0 0 00000001 1111 01111123445
Q ss_pred hhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhccccccc--ceeeeehhhHHHHHHhhhhh
Q 012132 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVA--GAMIDSHVTAEYWKNRTRER 224 (470)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~ 224 (470)
+..+||+||+|...............++.. .+.+...|......... ....+...+ .+++.|....+.+.+
T Consensus 78 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~S~~~~~~~~~----- 150 (413)
T 3oy2_A 78 DVHKPDIVMIYNDPIVIGNYLLAMGKCSHR-TKIVLYVDLVSKNIREN-LWWIFSHPKVVGVMAMSKCWISDICN----- 150 (413)
T ss_dssp HHHCCSEEEEEECHHHHHHHHHHGGGCCSC-CEEEEEECCCSBSCCGG-GGGGGGCTTEEEEEESSTHHHHHHHH-----
T ss_pred HhcCCCEEEEcchHHHHHHHHHHhccCCCC-CceeeeccccchhhHHH-HHHHHhccCCceEEEcCHHHHHHHHH-----
Confidence 678999999995433222222222233322 45556666554333222 355566655 888888888776653
Q ss_pred hccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 012132 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (470)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~ 302 (470)
++. ..++.+||||+|.+.|. ..++++++++ +.++|+++||+.+.||++.+++|++.+.+
T Consensus 151 ~~~-~~~~~vi~ngvd~~~~~-------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~----- 211 (413)
T 3oy2_A 151 YGC-KVPINIVSHFVDTKTIY-------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS----- 211 (413)
T ss_dssp TTC-CSCEEECCCCCCCCCCT-------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHH-----
T ss_pred cCC-CCceEEeCCCCCHHHHH-------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHH-----
Confidence 455 57899999999998771 2466788877 88999999999999999999999998866
Q ss_pred cccCCceEEEEEeCCCCcC-hHHHHHHHHHHHhcCCCCc-------EEEeccc--CCHHHHHHhcCEEEEccCCcccccc
Q 012132 303 KLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDR-------VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~-~~~~~~l~~~~~~~~l~~~-------V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+.|+++|+|+|+|.+.. ....+.++++++++|+.++ |.+.|++ +++.++|+.||++|+||. .|+||
T Consensus 212 --~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~--~E~~~ 287 (413)
T 3oy2_A 212 --KYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS--GEGFG 287 (413)
T ss_dssp --HCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS--CCSSC
T ss_pred --hCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC--cCCCC
Confidence 45899999999985321 1245899999999999987 8888986 589999999999999999 99999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCce---------------ee--eecCCCCChHHHHHHHHHHHhCHHHHHHHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTT---------------GL--LHPVGKEGITPLAKNIVKLATHVERRLTMGK 435 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~---------------G~--l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 435 (470)
++++|||+||+|||+|+.||.+|++.++.+ |+ +++++| +++|+++| ++++|++.++++++
T Consensus 288 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~~~~~~~~ 364 (413)
T 3oy2_A 288 LCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEKNRKEYGK 364 (413)
T ss_dssp HHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHHHHHHHHH
T ss_pred cHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCC--HHHHHHHH-HHhcCHHHHHHHHH
Confidence 999999999999999999999999998887 99 999998 99999999 99999999999999
Q ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 436 RGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 436 ~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
++++++.++|||+.++++++++|++++.+.
T Consensus 365 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 365 RVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 999999889999999999999999998654
|
| >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=355.74 Aligned_cols=365 Identities=14% Similarity=0.109 Sum_probs=266.1
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--------hhh--hhh---hhcceeeE
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--------SLE--HKM---WDRGVQVI 137 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~~--~~~---~~~~~~~~ 137 (470)
|||+++++.+.| ||.++++.+|+++|.++||+|+|++...+........ .+. ..+ ...|+.++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 799999987643 6669999999999999999999999653210000000 000 000 01345444
Q ss_pred ecCC--------------------------------hhhHHh----hcCCcEEEEcccchhhhHHHHhhhcCCcccccee
Q 012132 138 SAKG--------------------------------QETINT----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVL 181 (470)
Q Consensus 138 ~~~~--------------------------------~~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (470)
.... ...+.+ ..+||+||+|+...... ....... ....|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~--~~~~p~v 157 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAAR--GRPAKSV 157 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHT--TCSSEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhc--cCCCCEE
Confidence 3210 011122 26899999998654433 2222211 1236889
Q ss_pred eEEeeecccc-ch-------------------------hhhhcccccccceeeeehhhHHHHHHhhhhhhcc--------
Q 012132 182 WWIHEMRGHY-FK-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-------- 227 (470)
Q Consensus 182 ~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------- 227 (470)
+++|+..... +. ......+...+.+++.|....+.+.+. .++.
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~ 234 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEP---QFAYGMEGLLQQ 234 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH---HHHTTCHHHHHH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhcc---ccCcchHHHHHh
Confidence 9999863211 00 011122345677788877776554331 1342
Q ss_pred CC--CceEEEecCCchhhhhHhhhH-----------HHHHHHHHHHHHHcCCCC--CCeEEEEEeecccCCCHHHHHHHH
Q 012132 228 KM--PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSF 292 (470)
Q Consensus 228 ~~--~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~--~~~~i~~vGrl~~~Kg~~~ll~a~ 292 (470)
+. .++.+||||+|.+.|.+..+. ......+..+|+++|++. +.++|+++||+.+.||++.+++|+
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~ 314 (485)
T 2qzs_A 235 RHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEAL 314 (485)
T ss_dssp HHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHH
T ss_pred hccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHH
Confidence 22 689999999999988764321 011223567899999986 779999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEE-Eeccc-CCHHHHHHhcCEEEEccCCcccc
Q 012132 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKT-LTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 293 ~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~-~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
+.+.+ ++++|+|+|+|++ ++.+.+++++++++ ++|+ |.|+. +++..+|+.||++|+||. .|+
T Consensus 315 ~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~ 378 (485)
T 2qzs_A 315 PGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEYP--GQVGVQIGYHEAFSHRIMGGADVILVPSR--FEP 378 (485)
T ss_dssp HHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHST--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCS
T ss_pred HHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhCC--CcEEEeCCCCHHHHHHHHHhCCEEEECCc--cCC
Confidence 98855 6899999999831 37889999999886 6886 88986 445899999999999999 999
Q ss_pred cchHHHHHHhcCCCEEecCCCCcceeeecC---------ceeeeecCCCCChHHHHHHHHHHH---hCHHHHHHHHHHHH
Q 012132 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKRGY 438 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~g~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~a~ 438 (470)
||++++|||+||+|||+|+.||.+|++.++ .+|++++++| +++|+++|.+++ +|++.+++++++++
T Consensus 379 ~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~ 456 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSN--AWSLLRAIRRAFVLWSRPSLWRFVQRQAM 456 (485)
T ss_dssp SCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSS--HHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988 8999999998 999999999999 79999999999987
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
+ +.|||+.++++|.++|++++....
T Consensus 457 ~---~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 457 A---MDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp H---CCCCHHHHHHHHHHHHHHHC----
T ss_pred h---hcCCHHHHHHHHHHHHHHhhhhhc
Confidence 5 679999999999999999876543
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=347.73 Aligned_cols=348 Identities=15% Similarity=0.114 Sum_probs=266.2
Q ss_pred cEEEEEeeccCC-CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-------------
Q 012132 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (470)
|||+++++.+.+ ||+++++.+++++|+++||+|++++........ .++.++...
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~ 68 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP------------KAFELIQVPVKSHTNHGRNAEY 68 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC------------TTCEEEECCCCCSSHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCCC------------CCcEEEEEccCcccchhhHHHH
Confidence 789999988654 667999999999999999999999965322111 133333221
Q ss_pred --ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh-h-----hhccc--ccccceeeee
Q 012132 141 --GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-D-----YVKHL--PLVAGAMIDS 210 (470)
Q Consensus 141 --~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-~-----~~~~~--~~~~~~~~~s 210 (470)
....+.+..+||+||+|+...+...... . .....+.+++.|+........ . ....+ ...+.+++.|
T Consensus 69 ~~~l~~~i~~~~~Dvv~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 144 (374)
T 2iw1_A 69 YAWVQNHLKEHPADRVVGFNKMPGLDVYFA--A--DVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLT 144 (374)
T ss_dssp HHHHHHHHHHSCCSEEEESSCCTTCSEEEC--C--SCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCceeeec--c--ccccceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcC
Confidence 1223446679999999975433211100 0 001122333334322111110 0 11111 2467778888
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
....+.+.+ .++++..++.+||||+|.+.|.+..... .+..+|+++|+++++++++++||+.+.||++.+++
T Consensus 145 ~~~~~~~~~----~~~~~~~~~~vi~ngv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 145 DKQIADFQK----HYQTEPERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp HHHHHHHHH----HHCCCGGGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHH
T ss_pred HHHHHHHHH----HhCCChhheEEecCCcCHHhcCcccchh----HHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHH
Confidence 777665554 6788888999999999999887654221 24678999999989999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
|++.+.+.. .++++|+|+|+|. .+.++++++++++.++|+|+|+.+++.++|+.||++|+||. .|+
T Consensus 217 a~~~l~~~~------~~~~~l~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~--~e~ 282 (374)
T 2iw1_A 217 ALASLPESL------RHNTLLFVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEA 282 (374)
T ss_dssp HHHTSCHHH------HHTEEEEEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCS
T ss_pred HHHHhHhcc------CCceEEEEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccc--cCC
Confidence 998875421 2689999999983 36788999999999999999999999999999999999999 899
Q ss_pred cchHHHHHHhcCCCEEecCCCCcceeeecCceeeeec-CCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhH
Q 012132 371 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~-~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
||++++|||+||+|||+++.||..|++.++.+|++++ ++| +++++++|.++++|++.++++++++++++.+ |+|+.
T Consensus 283 ~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 359 (374)
T 2iw1_A 283 AGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADT-QDLYS 359 (374)
T ss_dssp SCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-SCCSC
T ss_pred cccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-hhHHH
Confidence 9999999999999999999999999999999999998 778 9999999999999999999999999999975 89999
Q ss_pred HHHHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEVLK 463 (470)
Q Consensus 450 ~~~~~~~~~~~~l~ 463 (470)
+++++.++++..++
T Consensus 360 ~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 360 LPEKAADIITGGLD 373 (374)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987653
|
| >3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=352.56 Aligned_cols=369 Identities=18% Similarity=0.147 Sum_probs=256.6
Q ss_pred cccEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH----h--hhh--------hhhhcce
Q 012132 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY----S--LEH--------KMWDRGV 134 (470)
Q Consensus 73 ~~~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~----~--~~~--------~~~~~~~ 134 (470)
..|||||++.++.| ||-..++..|.++|+++||+|.|+++..+........ . +.. .....|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 46899999998765 5558999999999999999999999655432110000 0 000 0011222
Q ss_pred eeEecCC----------------------------hh------h---HH-------------hhcCCcEEEEcccchhhh
Q 012132 135 QVISAKG----------------------------QE------T---IN-------------TALKADLIVLNTAVAGKW 164 (470)
Q Consensus 135 ~~~~~~~----------------------------~~------~---~~-------------~~~~~DiV~~~~~~~~~~ 164 (470)
.++.... .+ . +. ...++||+|+|+...+..
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 2221100 00 0 00 013467888998665443
Q ss_pred HHHHhhhc---CCccccceeeEEeeeccccc------h-----h----------------------hhhcccccccceee
Q 012132 165 LDAVLKED---VPRVLPNVLWWIHEMRGHYF------K-----L----------------------DYVKHLPLVAGAMI 208 (470)
Q Consensus 165 ~~~~~~~~---~~~~~~~~~~~~h~~~~~~~------~-----~----------------------~~~~~~~~~~~~~~ 208 (470)
...+.... ......++++|+|+...... . . .....+..++.+++
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 33222111 11123689999997531100 0 0 00112234577788
Q ss_pred eehhhHHHHHHhhhh----hhccCCCceEEEecCCchhhhhHhhh------------HHHHHHHHHHHHHHcCCCC--CC
Q 012132 209 DSHVTAEYWKNRTRE----RLRIKMPDTYVVHLGNSKELMEVAED------------NVAKRVLREHVRESLGVRN--ED 270 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~----~~~~~~~~i~vi~ngvd~~~~~~~~~------------~~~~~~~~~~~r~~~~~~~--~~ 270 (470)
+|...++...+.... .......++.+|+||||.+.|.|..+ ...+...+..+++++|++. +.
T Consensus 248 VS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 248 VSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp SCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 888776655432110 01134578999999999999887532 1233455778889999864 56
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--C
Q 012132 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--L 348 (470)
Q Consensus 271 ~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~ 348 (470)
++|+++||+.++||++.+++|++++.+ .+.+++++|.|.. +....++.....++ ++|.+.+.. +
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~~--~~v~~~~~~~~~ 393 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKYP--GKVRAVVKFNAP 393 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHST--TTEEEECSCCHH
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhcC--CceEEEEeccHH
Confidence 899999999999999999999998854 6788999998842 35566666666554 678888864 6
Q ss_pred CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceee----------eecCCCCChHHHHH
Q 012132 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL----------LHPVGKEGITPLAK 418 (470)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~----------l~~~~d~~~~~la~ 418 (470)
++..+|+.||++|+||+ .|+||++++|||+||+|||+|++||++|+|.|+++|+ ++++.| +++|++
T Consensus 394 ~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d--~~~la~ 469 (536)
T 3vue_A 394 LAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD--VKKVAA 469 (536)
T ss_dssp HHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHH--HHHHHH
T ss_pred HHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCC--HHHHHH
Confidence 67889999999999999 9999999999999999999999999999999999998 666677 999999
Q ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 419 NIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 419 ~i~~ll~--~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+|.++++ +.+.++++.+++. .+.|||++++++|+++|+++.
T Consensus 470 ai~ral~~~~~~~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEMVRNCM---NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHhh
Confidence 9998876 5455677776664 467999999999999999873
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=335.50 Aligned_cols=344 Identities=17% Similarity=0.168 Sum_probs=263.4
Q ss_pred ccccEEEEEeeccCC--CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe-----------
Q 012132 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS----------- 138 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~--~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 138 (470)
.++|||+++++.+++ ||+++++.+++++|.++||+|++++......... ......+ .++.
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~ 90 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLP------DYVVSGG-KAVPIPYNGSVARLR 90 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCC------TTEEECC-CCC------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCC------cccccCC-cEEeccccCCccccc
Confidence 356899999987654 6668999999999999999999999654432100 0000000 1110
Q ss_pred c-----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-----hhhhcccccccceee
Q 012132 139 A-----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----LDYVKHLPLVAGAMI 208 (470)
Q Consensus 139 ~-----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-----~~~~~~~~~~~~~~~ 208 (470)
. .....+.+..+||+||+|......+...+.+. ...|++++.|+....... ......+...+.+++
T Consensus 91 ~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 166 (406)
T 2gek_A 91 FGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIA 166 (406)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEE
Confidence 0 12334456679999999986654432222221 125788999986433211 111134467788888
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec-ccCCCHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDL 287 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl-~~~Kg~~~ 287 (470)
.|....+.+.+ .++ ..++ +||||+|.+.+.+.... .+++.+.++++++||+ .+.||++.
T Consensus 167 ~s~~~~~~~~~----~~~--~~~~-vi~~~v~~~~~~~~~~~-------------~~~~~~~~~i~~~G~~~~~~Kg~~~ 226 (406)
T 2gek_A 167 VSDLARRWQME----ALG--SDAV-EIPNGVDVASFADAPLL-------------DGYPREGRTVLFLGRYDEPRKGMAV 226 (406)
T ss_dssp SSHHHHHHHHH----HHS--SCEE-ECCCCBCHHHHHTCCCC-------------TTCSCSSCEEEEESCTTSGGGCHHH
T ss_pred CCHHHHHHHHH----hcC--CCcE-EecCCCChhhcCCCchh-------------hhccCCCeEEEEEeeeCccccCHHH
Confidence 88877766654 333 4578 99999999887654311 2233456899999999 99999999
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccC
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~ 365 (470)
+++|+..+.+ +.|+++|+|+|+| +. +.++++++++ .++|+|+|++ +++.++|+.||++|+||.
T Consensus 227 li~a~~~l~~-------~~~~~~l~i~G~~-----~~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~ 291 (406)
T 2gek_A 227 LLAALPKLVA-------RFPDVEILIVGRG-----DE-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHL 291 (406)
T ss_dssp HHHHHHHHHT-------TSTTCEEEEESCS-----CH-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCC
T ss_pred HHHHHHHHHH-------HCCCeEEEEEcCC-----cH-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCC
Confidence 9999998855 4589999999998 45 7888888876 6799999987 567999999999999985
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHc
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 445 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 445 (470)
+.|+||++++|||+||+|||+++.||..|++.++.+|++++++| +++++++|.++++|++.+.++++++++++. .|
T Consensus 292 -~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 292 -GGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp -SCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred -CCCCCchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 38999999999999999999999999999999999999999988 999999999999999999999999999998 89
Q ss_pred ChhHHHHHHHHHHHHHHHhh
Q 012132 446 QEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 446 s~~~~~~~~~~~~~~~l~~~ 465 (470)
+|+++++++.++|++++...
T Consensus 368 s~~~~~~~~~~~~~~~~~~~ 387 (406)
T 2gek_A 368 DWSVVSAQIMRVYETVSGAG 387 (406)
T ss_dssp BHHHHHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998654
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=327.32 Aligned_cols=309 Identities=17% Similarity=0.109 Sum_probs=246.0
Q ss_pred ccccEEEEEeec-----------cCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeE
Q 012132 72 MKSKLVLLVSHE-----------LSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI 137 (470)
Q Consensus 72 ~~~~kIl~v~~~-----------~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (470)
|++|||+++++. +++ ||+++++.+++++|.++||+|++++....... ..++.++
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~------------~~~~~~~ 68 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG------------RPGLTVV 68 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC------------STTEEEC
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC------------CCcceec
Confidence 567999999998 232 66689999999999999999999996644321 1234443
Q ss_pred ecC---ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhH
Q 012132 138 SAK---GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (470)
Q Consensus 138 ~~~---~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (470)
+.. ....+.+..+||+||+|........ . .....| +++.|+...... ..+.+++.|....
T Consensus 69 ~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~~~----~---~~~~~p-v~~~h~~~~~~~---------~~d~ii~~S~~~~ 131 (342)
T 2iuy_A 69 PAGEPEEIERWLRTADVDVVHDHSGGVIGPA----G---LPPGTA-FISSHHFTTRPV---------NPVGCTYSSRAQR 131 (342)
T ss_dssp SCCSHHHHHHHHHHCCCSEEEECSSSSSCST----T---CCTTCE-EEEEECSSSBCS---------CCTTEEESCHHHH
T ss_pred cCCcHHHHHHHHHhcCCCEEEECCchhhHHH----H---hhcCCC-EEEecCCCCCcc---------cceEEEEcCHHHH
Confidence 333 2345556689999999986654332 1 112356 899998754321 2678888888776
Q ss_pred HHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 012132 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (470)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~ 294 (470)
+.+.+ ..++.+||||+|.+.|.+... .. .+..+++++||+.+.||++.+++|++.
T Consensus 132 ~~~~~---------~~~~~vi~ngvd~~~~~~~~~---------------~~-~~~~~i~~vG~~~~~Kg~~~li~a~~~ 186 (342)
T 2iuy_A 132 AHCGG---------GDDAPVIPIPVDPARYRSAAD---------------QV-AKEDFLLFMGRVSPHKGALEAAAFAHA 186 (342)
T ss_dssp HHTTC---------CTTSCBCCCCBCGGGSCCSTT---------------CC-CCCSCEEEESCCCGGGTHHHHHHHHHH
T ss_pred HHHhc---------CCceEEEcCCCChhhcCcccc---------------cC-CCCCEEEEEeccccccCHHHHHHHHHh
Confidence 55432 567999999999988765431 11 345678999999999999999999986
Q ss_pred HHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC------
Q 012132 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA------ 366 (470)
Q Consensus 295 l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~------ 366 (470)
+ +++|+|+|+| +..+.+++++++++ ++|+|+|++ +++.++|+.||++|+||..
T Consensus 187 ~------------~~~l~i~G~g-----~~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~ 247 (342)
T 2iuy_A 187 C------------GRRLVLAGPA-----WEPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWG 247 (342)
T ss_dssp H------------TCCEEEESCC-----CCHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTC
T ss_pred c------------CcEEEEEeCc-----ccHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccc
Confidence 4 6899999998 46788888888887 799999997 4669999999999999971
Q ss_pred --cccccchHHHHHHhcCCCEEecCCCCcceeeec--CceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 367 --WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 367 --~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
|.|+||++++|||+||+|||+++.||.+|++.+ +.+|+++++ | +++++++|.++++ ++++++++.
T Consensus 248 ~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~--------~~~~~~~~~ 316 (342)
T 2iuy_A 248 GIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA--------SDEVRRAAV 316 (342)
T ss_dssp SCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC--------HHHHHHHHH
T ss_pred cccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH--------HHHHHHHHH
Confidence 269999999999999999999999999999999 899999999 8 9999999999986 678889998
Q ss_pred HHcChhHHHHHHHHHHHHHHHh
Q 012132 443 EIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
++|||+++++++.++|++++++
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 317 RLWGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp HHHBHHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHcc
Confidence 8999999999999999999875
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=351.37 Aligned_cols=375 Identities=14% Similarity=0.160 Sum_probs=264.3
Q ss_pred cccEEEEEeeccC---------C-Cch-hHHHH--------HHHHHHHhCCceEE----EEecCCCCCchh-HHHhhhhh
Q 012132 73 KSKLVLLVSHELS---------L-SGG-PLLLM--------ELAFLLRGVGTKVN----WITIQKPSEEDE-VIYSLEHK 128 (470)
Q Consensus 73 ~~~kIl~v~~~~~---------~-~G~-~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~~~-~~~~~~~~ 128 (470)
|.++|++++.... + .|| ..++. +|++.|+++||+|+ |+|...+..... ........
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 5689999998753 3 455 67887 47777788999886 888543322110 00000111
Q ss_pred hhhcceeeEecCCh---------------------------hhHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccc
Q 012132 129 MWDRGVQVISAKGQ---------------------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPN 179 (470)
Q Consensus 129 ~~~~~~~~~~~~~~---------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (470)
-...|+.+++.+.. ..+.. ..+||+||+|....+.....+.+. ...|
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~----~gvP 432 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK----LGVT 432 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH----HTCC
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH----cCCC
Confidence 11134555433210 01111 247999999975544332222221 1257
Q ss_pred eeeEEeeeccccch-------h---h---------hhcccccccceeeeehhhHHHHHHh---hhhh-------------
Q 012132 180 VLWWIHEMRGHYFK-------L---D---------YVKHLPLVAGAMIDSHVTAEYWKNR---TRER------------- 224 (470)
Q Consensus 180 ~~~~~h~~~~~~~~-------~---~---------~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~------------- 224 (470)
++++.|+....... . . ....+..++.+++.|....+.+.+. +...
T Consensus 433 ~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~ 512 (816)
T 3s28_A 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVH 512 (816)
T ss_dssp EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEE
T ss_pred EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhccc
Confidence 88999975321110 0 0 1113556777888877665421110 1100
Q ss_pred -hccCCCceEEEecCCchhhhhHhhhHHH------HHH-----HHHHHHHHcCC--CCCCeEEEEEeecccCCCHHHHHH
Q 012132 225 -LRIKMPDTYVVHLGNSKELMEVAEDNVA------KRV-----LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 225 -~~~~~~~i~vi~ngvd~~~~~~~~~~~~------~~~-----~~~~~r~~~~~--~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
.+...+++.|||||+|.+.|.+...... ... .....++.+|+ ++++++|+++||+.+.||++.+++
T Consensus 513 gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIe 592 (816)
T 3s28_A 513 GIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVE 592 (816)
T ss_dssp SCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHH
T ss_pred ccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHH
Confidence 0222348999999999999876542210 000 01123456676 677899999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCC------cChHHHHHHHHHHHhcCCCCcEEEeccc------CCHHHHHH-hc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMN------AQTKFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AI 357 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~------~~~~~~~~l~~~~~~~~l~~~V~~~g~~------~~~~~~~~-~a 357 (470)
|++++.+ ..++++|+|+|+|.+ ....+.+.++++++++++.++|.|+|++ +++..+|+ ++
T Consensus 593 A~~~L~~-------~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa 665 (816)
T 3s28_A 593 WYGKNTR-------LRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK 665 (816)
T ss_dssp HHHHCHH-------HHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcC
Confidence 9998865 237899999999852 0112678899999999999999999964 45888888 68
Q ss_pred CEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHH----hCHHHHHHH
Q 012132 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERRLTM 433 (470)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~~~~ 433 (470)
|++|+||. .|+||++++||||||+|||+|+.||.+|++.++.+|++++++| +++++++|.+++ +|++.++++
T Consensus 666 DvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D--~e~LA~aI~~lL~~Ll~d~~~~~~m 741 (816)
T 3s28_A 666 GAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYH--GDQAADTLADFFTKCKEDPSHWDEI 741 (816)
T ss_dssp CEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTS--HHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred eEEEECCC--ccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCC--HHHHHHHHHHHHHHhccCHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999998 999999997776 899999999
Q ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 434 GKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 434 ~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
++++++++.++|||+.+++++.++|+..-
T Consensus 742 ~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 742 SKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999763
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=310.18 Aligned_cols=342 Identities=12% Similarity=0.104 Sum_probs=227.4
Q ss_pred ccccEEEEEeeccCCC---chhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhh----hh-hcc--eeeEecC-
Q 012132 72 MKSKLVLLVSHELSLS---GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK----MW-DRG--VQVISAK- 140 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~---G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~----~~-~~~--~~~~~~~- 140 (470)
..+|||+++++.+.++ ||.+.+.+++++|.++||+|+|++....... .....+... +. ... ..+....
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNP-KDLQSFKSFKYVMPEEDKDFALQIVPFND 122 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCH-HHHGGGTTSEECCTTCCCCCSEEEEECSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCCh-HHHHhhhccceeeccCCccccceeeeccc
Confidence 4568999999998875 7777899999999999999999997543221 111101000 00 000 0111111
Q ss_pred ChhhHHhhcCCcEEEEcccchhhhHHHHhh---hcCCccccceeeEEeeeccccchhh-----hhccccccc--ceeeee
Q 012132 141 GQETINTALKADLIVLNTAVAGKWLDAVLK---EDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVA--GAMIDS 210 (470)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~~~~~~~~-----~~~~~~~~~--~~~~~s 210 (470)
.........++|+||++............. ........+.++.+|+..+.+.... ....+...+ .++++|
T Consensus 123 ~~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 202 (413)
T 2x0d_A 123 RYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNS 202 (413)
T ss_dssp CTTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEES
T ss_pred cccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcC
Confidence 011111235799999987443332222210 0000001345666676544322111 112222223 356677
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeec-ccCCCHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl-~~~Kg~~~ll 289 (470)
....+.+.+ .|++..++.+++||+|.+.|.+.. .+ ..+...++++||+ .+.||++.++
T Consensus 203 ~~~~~~l~~-----~g~~~~~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~Kg~~~li 261 (413)
T 2x0d_A 203 ELLKQYFNN-----KGYNFTDEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRNAFTLIV 261 (413)
T ss_dssp HHHHHHHHH-----HTCCCSEEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGGCHHHHH
T ss_pred HHHHHHHHH-----cCCCCCceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecCchhccCHHHHH
Confidence 777666653 355556789999999988664311 11 1345667889996 6889999999
Q ss_pred HHHHHHHHHHHhhcccCC---ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 290 HSFYESLELIKEKKLEVP---SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~---~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
+|++.+.+ ++| +++|+++|+|... .++++.++|+|+|++ +++.++|+.||+||+||
T Consensus 262 ~A~~~l~~-------~~~~~~~~~l~ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS 322 (413)
T 2x0d_A 262 EALKIFVQ-------KYDRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLM 322 (413)
T ss_dssp HHHHHHHH-------HCTTGGGCEEEEEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCC
T ss_pred HHHHHHHH-------hCCCCCceEEEEEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEec
Confidence 99998865 235 4899999998421 346777899999985 78999999999999999
Q ss_pred CCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
. .|+||++++||||||+|||+++ +|..|++.++.+|++++++| +++|+++|.++++|++++++ ++++.+ +.
T Consensus 323 ~--~E~~g~~~lEAmA~G~PVV~~~-~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~---~~~~~~-~~ 393 (413)
T 2x0d_A 323 I--SPHPSYPPLEMAHFGLRVITNK-YENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV---DKKESS-NM 393 (413)
T ss_dssp S--SSSCCSHHHHHHHTTCEEEEEC-BTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC----------CCB-SC
T ss_pred C--CCCCCcHHHHHHhCCCcEEEeC-CCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---hHHHHH-Hh
Confidence 9 8999999999999999999954 66789999999999999999 99999999999998887766 566655 46
Q ss_pred cChhHHHHHHHHHHHHHHHh
Q 012132 445 FQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 445 fs~~~~~~~~~~~~~~~l~~ 464 (470)
|+|+++.++ .++|++++++
T Consensus 394 ~~W~~~~~~-~~~~~~l~~~ 412 (413)
T 2x0d_A 394 MFYINEFNE-FSFIKEIEEK 412 (413)
T ss_dssp GGGCCCC----TTHHHHHTT
T ss_pred CCHHHHHHH-HHHHHHHHhh
Confidence 999999988 7888887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=302.02 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=243.9
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHH--HHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-----Chh
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFL--LRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQE 143 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 143 (470)
..++|||+++++.+..+|.++++.++++. +.+.||+|++++....... .. ...+...+ .+.... ...
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~-~~----~~~~~~~~-~~~~~~~~~~~~l~ 275 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGS-TL----RTRLAQAS-TLHDVTALGHLATA 275 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSC-HH----HHHHHHTS-EEEECTTCCHHHHH
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCcc-HH----HHHHHhcC-eEEECCCCCHHHHH
Confidence 45679999999999888889999999999 8888999999996432111 11 11222222 332221 234
Q ss_pred hHHhhcCCcEEEEcccchh-hhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhh
Q 012132 144 TINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (470)
...+..+|||||.++.... ..+....... .++..+.|+..... .... ..+...+.+++.|....
T Consensus 276 ~~i~~~~~Div~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~-~~~~~~d~~i~~s~~~~-------- 340 (568)
T 2vsy_A 276 KHIRHHGIDLLFDLRGWGGGGRPEVFALRP-----APVQVNWLAYPGTS-GAPW-MDYVLGDAFALPPALEP-------- 340 (568)
T ss_dssp HHHHHTTCSEEEECSSCTTCSSCHHHHTCC-----SSEEEEESSSSSCC-CCTT-CCEEEECTTTSCTTTGG--------
T ss_pred HHHHhCCCCEEEECCCCCCcchHHHHhcCC-----CceeEeeecCCccc-CCCC-ceEEEECCCcCCccccc--------
Confidence 5557789999998654321 1111111111 34455555431111 1000 01112344444444332
Q ss_pred hhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 012132 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (470)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~ 302 (470)
.++ +++.+|||.+......+... +...|+++|++++.+++ ++||+.+ ||++.+++++.++.+
T Consensus 341 -~~~---~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~v~-~~g~~~~-K~~~~li~a~~~l~~----- 402 (568)
T 2vsy_A 341 -FYS---EHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGVVL-CCFNNSY-KLNPQSMARMLAVLR----- 402 (568)
T ss_dssp -GCS---SEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSCEE-EECCCGG-GCCHHHHHHHHHHHH-----
T ss_pred -CCc---ceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCEEE-EeCCccc-cCCHHHHHHHHHHHH-----
Confidence 222 67999999654332111000 12357788987776555 8999999 999999999998865
Q ss_pred cccCCceEEEEEe-CCCCcChHHHHHHHHHHHhcCCC-CcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHH
Q 012132 303 KLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (470)
Q Consensus 303 ~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (470)
+.|+++|+|+| +| +..+.+++.++++|+. ++|+|+|++ +++..+|+.+|++|+||. . +||++++||
T Consensus 403 --~~~~~~l~i~G~~g-----~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~-~~g~~~lEA 472 (568)
T 2vsy_A 403 --EVPDSVLWLLSGPG-----EADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHP--Y-NAHTTASDA 472 (568)
T ss_dssp --HCTTCEEEEECCST-----THHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHH
T ss_pred --hCCCcEEEEecCCH-----HHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCC--C-CCcHHHHHH
Confidence 45899999999 66 6889999999999998 999999998 489999999999999999 7 999999999
Q ss_pred HhcCCCEEe-------cCCC-------CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH--H
Q 012132 379 MAFQLPVLG-------TAAG-------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV--K 442 (470)
Q Consensus 379 ma~G~PvI~-------s~~~-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~--~ 442 (470)
|+||+|||+ |+.| |++|++.+ | +++++++|.++++|++.++++++++++.+ .
T Consensus 473 ma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 540 (568)
T 2vsy_A 473 LWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA----------D--DAAFVAKAVALASDPAALTALHARVDVLRRAS 540 (568)
T ss_dssp HHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS----------S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred HhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC----------C--HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcC
Confidence 999999999 9999 99998854 5 99999999999999999999999999998 6
Q ss_pred HHcChhHHHHHHHHHHHHHHHhh
Q 012132 443 EIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 443 ~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+.|+|+.++++++++|++++...
T Consensus 541 ~~f~~~~~~~~~~~~y~~~~~~~ 563 (568)
T 2vsy_A 541 GVFHMDGFADDFGALLQALARRH 563 (568)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999998754
|
| >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=275.96 Aligned_cols=320 Identities=13% Similarity=0.056 Sum_probs=228.4
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 141 (470)
|||++++. ..||.+..+..++++|.++||+|++++...... ...+...|+.++....
T Consensus 7 mkIl~~~~--~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T 1f0k_A 7 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--------ADLVPKHGIEIDFIRISGLRGKGIKALIA 76 (364)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--------HHHGGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred cEEEEEeC--CCccchhHHHHHHHHHHHcCCEEEEEecCCcch--------hhhccccCCceEEecCCccCcCccHHHHH
Confidence 89999983 335668889999999999999999999654321 1112223444432210
Q ss_pred -----------hhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeee
Q 012132 142 -----------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (470)
...+.+..+||+||++..........+.+. . ..|++.+.|+....... .......+.+++.+
T Consensus 77 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~-~---~~p~v~~~~~~~~~~~~---~~~~~~~d~v~~~~ 149 (364)
T 1f0k_A 77 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWS-L---GIPVVLHEQNGIAGLTN---KWLAKIATKVMQAF 149 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHH-T---TCCEEEEECSSSCCHHH---HHHTTTCSEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHH-c---CCCEEEEecCCCCcHHH---HHHHHhCCEEEecC
Confidence 123345579999999976533222222211 1 24677777865332211 11223445555443
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCe-EEEEEeecccCCCHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~vGrl~~~Kg~~~ll 289 (470)
... ++ ++.+++||++.+.+.+.. .+++++++++.. ++++.|++.+.||.+.++
T Consensus 150 ~~~-------------~~--~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~li 203 (364)
T 1f0k_A 150 PGA-------------FP--NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTMP 203 (364)
T ss_dssp TTS-------------SS--SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHHH
T ss_pred hhh-------------cC--CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHHH
Confidence 221 12 578999999988764421 134566766665 455567999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceE-EEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcc
Q 012132 290 HSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (470)
+|++.+. .+++ ++++|+| + .+++++++++++++ +|+|+|+++++.++|+.||++|+||.
T Consensus 204 ~a~~~l~----------~~~~~l~i~G~~-----~-~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~sg--- 263 (364)
T 1f0k_A 204 QVAAKLG----------DSVTIWHQSGKG-----S-QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRSG--- 263 (364)
T ss_dssp HHHHHHG----------GGEEEEEECCTT-----C-HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECCC---
T ss_pred HHHHHhc----------CCcEEEEEcCCc-----h-HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECCc---
Confidence 9998872 1577 5678887 3 47788889888874 79999999999999999999999983
Q ss_pred cccchHHHHHHhcCCCEEecCCCCcc--------eeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 369 ECFGRITIEAMAFQLPVLGTAAGGTT--------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 369 E~~g~~~lEAma~G~PvI~s~~~g~~--------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
|++++|||++|+|||+++.+|.+ +++.++ .|++++++|.++++++++|.++ |++.++++++++++.
T Consensus 264 ---~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~ 337 (364)
T 1f0k_A 264 ---ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAA 337 (364)
T ss_dssp ---HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 99999999999999999999864 455444 5999998665589999999998 999999999999988
Q ss_pred HHHHcChhHHHHHHHHHHHHHHHh
Q 012132 441 VKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 441 ~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+. .|+|++++++++++|++.-..
T Consensus 338 ~~-~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 338 SI-PDATERVANEVSRVARALEHH 360 (364)
T ss_dssp CC-TTHHHHHHHHHHHHHTTC---
T ss_pred hc-cCHHHHHHHHHHHHHHHHHhh
Confidence 75 699999999999999876543
|
| >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=270.69 Aligned_cols=312 Identities=13% Similarity=0.118 Sum_probs=213.6
Q ss_pred cccEEEEEeec-cCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHH--------hhhhhhhhcceeeEecC---
Q 012132 73 KSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--------SLEHKMWDRGVQVISAK--- 140 (470)
Q Consensus 73 ~~~kIl~v~~~-~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 140 (470)
++|||+++++. +++ |.+.....+++.|+++| +|+|++...... ..... .........|+.++...
T Consensus 13 ~~MkIl~is~~~~p~-~~~~~~~~l~~~l~~~G-~V~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~ 89 (406)
T 2hy7_A 13 RRPCYLVLSSHDFRT-PRRANIHFITDQLALRG-TTRFFSLRYSRL-SRMKGDMRLPLDDTANTVVSHNGVDCYLWRTTV 89 (406)
T ss_dssp CCSCEEEEESSCTTS-SSCCHHHHHHHHHHHHS-CEEEEECSCBTT-HHHHTCTTGGGGGGTTSEEEETTEEEEECCBSS
T ss_pred CCceEEEEecccCCC-hhhhhHhHHHHHHHhCC-ceEEEEecccHH-HHhhccchhhhhccCccceecCCeEEEeecccc
Confidence 45899999998 663 33334556788888999 999996432110 00000 00000012344443211
Q ss_pred -------Ch----h------------hHHh--hcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-c----
Q 012132 141 -------GQ----E------------TINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-H---- 190 (470)
Q Consensus 141 -------~~----~------------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~---- 190 (470)
.. . .... ..++|+||.+......+....... ..|++.+.|+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~~~~~~~~~~-----~~p~v~~~h~~~~~~~~~~ 164 (406)
T 2hy7_A 90 HPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRV-----NPAAKLVYRASDGLSTINV 164 (406)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGGGGHHHHHHH-----CTTSEEEEEESSCHHHHTC
T ss_pred CCccccchhhhccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHHHHHHHHHHh-----CCCEEEEEeccchhhcccc
Confidence 00 0 0011 127999996544433321211111 2467778886432 1
Q ss_pred --cchhhhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC
Q 012132 191 --YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (470)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (470)
.........+...+.+++.|....+.+.+ ++ ++.+||||+|.+.|.+.... ..+
T Consensus 165 ~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~-----~~----~i~vipngvd~~~f~~~~~~---------------~~~ 220 (406)
T 2hy7_A 165 ASYIEREFDRVAPTLDVIALVSPAMAAEVVS-----RD----NVFHVGHGVDHNLDQLGDPS---------------PYA 220 (406)
T ss_dssp CHHHHHHHHHHGGGCSEEEESCGGGGGGCSC-----ST----TEEECCCCBCTTHHHHHCSC---------------SCC
T ss_pred cHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh-----cC----CEEEEcCCcChHhcCccccc---------------ccC
Confidence 11122344566788889988887655432 22 79999999999988654211 112
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (470)
+.++++++||+.+.||+ ++++ .+ +.++++|+|+|+| + ++++++.++|+|+|++
T Consensus 221 ~~~~i~~vGrl~~~Kg~---~~~l---~~-------~~~~~~l~ivG~g-----~--------~~~~~l~~~V~f~G~~~ 274 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEF---FVVA---SK-------AFPQVTFHVIGSG-----M--------GRHPGYGDNVIVYGEMK 274 (406)
T ss_dssp SSEEEEEECCTTBCHHH---HHHH---HH-------HCTTEEEEEESCS-----S--------CCCTTCCTTEEEECCCC
T ss_pred CCcEEEEEeccccccCH---HHHH---HH-------hCCCeEEEEEeCc-----h--------HHhcCCCCCEEEcCCCC
Confidence 33889999999999998 3333 22 2489999999998 3 5667888999999987
Q ss_pred -CCHHHHHHhcCEEEEccCCcccccchHHHHHH-------hcCCCEEecCCCCcceeeecCceeee-ecCCCCChHHHHH
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-------AFQLPVLGTAAGGTTEIVVNGTTGLL-HPVGKEGITPLAK 418 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-------a~G~PvI~s~~~g~~e~v~~~~~G~l-~~~~d~~~~~la~ 418 (470)
+++.++|++||++|+||. .|+||++++||| |||+|||+|+. +.++.+|++ ++++| +++|++
T Consensus 275 ~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d--~~~la~ 344 (406)
T 2hy7_A 275 HAQTIGYIKHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGN--ADSVIA 344 (406)
T ss_dssp HHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTC--HHHHHH
T ss_pred HHHHHHHHHhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceEEEeCCCC--HHHHHH
Confidence 689999999999999999 999999999999 99999999987 567889999 99998 999999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH--HHHHH
Q 012132 419 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV--LKEVL 462 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~--~~~~l 462 (470)
+|.++++|++ + ...+.|+|+.++++++++ |+++.
T Consensus 345 ai~~ll~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 345 AITQALEAPR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp HHHHHHHCCC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred HHHHHHhCcc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 9999999876 1 223669999999999999 87654
|
| >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=263.83 Aligned_cols=347 Identities=11% Similarity=0.037 Sum_probs=230.1
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc-eEEEEecCCCCCchhHHHhhhhhhhhcceee-Ee--c-----------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-IS--A----------- 139 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~----------- 139 (470)
|||++++... ........++++|+++|+ ++.++......... .......++.. +. .
T Consensus 1 mkIl~v~~~~---~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 1vgv_A 1 MKVLTVFGTR---PEAIKMAPLVHALAKDPFFEAKVCVTAQHREML------DQVLKLFSIVPDYDLNIMQPGQGLTEIT 71 (384)
T ss_dssp CEEEEEECSH---HHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGG------HHHHHHHTCCCSEECCCCSTTSCHHHHH
T ss_pred CeEEEEeccc---HHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHH------HHHHHHcCCCCCcceecCCCCccHHHHH
Confidence 7899987543 112456789999999994 88776543221111 01111122211 11 1
Q ss_pred ----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc----c-hhhhhcc-cccccceeee
Q 012132 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----F-KLDYVKH-LPLVAGAMID 209 (470)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~-~~~~~~~-~~~~~~~~~~ 209 (470)
.....+.+..+||+||+|......+........ ...|++++.|+..... + ....... ....+.+++.
T Consensus 72 ~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 148 (384)
T 1vgv_A 72 CRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFY---QRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSP 148 (384)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHT---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcC
Confidence 112344566899999998752222222222211 1246777777653110 1 1111111 2346777777
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcC-CCC-CCeEEEEEeecccC-CCH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVSRG-KGQ 285 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~i~~vGrl~~~-Kg~ 285 (470)
+....+.+. .+|++.+++.+++||+ |...+.+.... .....+.++++++| +++ ++++++++||+.+. ||+
T Consensus 149 s~~~~~~l~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~ 222 (384)
T 1vgv_A 149 TETSRQNLL-----RENVADSRIFITGNTVIDALLWVRDQVM-SSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGF 222 (384)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHTT-TCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHH
T ss_pred cHHHHHHHH-----HcCCChhhEEEeCChHHHHHHhhhhccc-cchhhhHHHHHhccccCCCCCEEEEEeCCccccchHH
Confidence 777665553 4577778899999995 33322221000 00001245788888 754 45778899999876 999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEE
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~ 362 (470)
+.+++|+.++.+ +.|+++++++ |++. .+.+.+++++.. .++|+|+|+. +++.++|+.||++|+
T Consensus 223 ~~li~a~~~l~~-------~~~~~~l~i~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~ 288 (384)
T 1vgv_A 223 EEICHALADIAT-------THQDIQIVYPVHLNP----NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILT 288 (384)
T ss_dssp HHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEEcCCCH----HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEE
Confidence 999999998865 3478999886 4331 255666665432 3689997653 789999999999999
Q ss_pred ccCCcccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 363 NSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
|| |.+++|||++|+|||+++. |+..|++.++ +|+++++ | +++|+++|.++++|++.+++|+++++++.
T Consensus 289 ~S-------g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~~~~~ 357 (384)
T 1vgv_A 289 DS-------GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMSRAHNPYG 357 (384)
T ss_dssp SS-------STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHHSSCCTTC
T ss_pred CC-------cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhhhccCCCc
Confidence 98 3448999999999999986 8999999887 9999987 6 99999999999999999999999998775
Q ss_pred HHHcChhHHHHHHHHHHHHHHHhh
Q 012132 442 KEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+.|+|+++++.+.++|+++....
T Consensus 358 -~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 358 -DGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp -CSCHHHHHHHHHHHTCCCC----
T ss_pred -CCCHHHHHHHHHHHHHHhhcccc
Confidence 56999999999999988876543
|
| >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=263.92 Aligned_cols=339 Identities=12% Similarity=0.072 Sum_probs=222.3
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhC-C-ceEEEEecCCCCCchhHHHhhhhhhhhcceee------Eec-C-
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV------ISA-K- 140 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~- 140 (470)
++++|||++++...+.. .....++++|.++ | |+|.+++...+.... .......++.. ... .
T Consensus 5 m~~~mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 75 (375)
T 3beo_A 5 MTERLKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQML------DQVLSIFGITPDFDLNIMKDRQT 75 (375)
T ss_dssp CSSCEEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHH------HHHHHHHTCCCSEECCCCCTTCC
T ss_pred CCcCceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHH------HHHHHHcCCCCccccccCCCccc
Confidence 34568999998654322 2456788888886 4 888777644332111 11111112211 100 0
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc----chh-hhhccc-cccc
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKL-DYVKHL-PLVA 204 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~~~-~~~~~~-~~~~ 204 (470)
....+.+..+||+||+|+.....+......... ..|++++.|+..... +.. ...+.+ ...+
T Consensus 76 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~---~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 152 (375)
T 3beo_A 76 LIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYN---QIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMAD 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHT---TCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHH---CCCEEEEecccccccccCCChhHhhhhHHhhhhh
Confidence 123445668999999987532222221111111 245666556542110 001 111112 2356
Q ss_pred ceeeeehhhHHHHHHhhhhhhccCCCceEEEecC-CchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccC-
Q 012132 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG- 282 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~- 282 (470)
.+++.|....+.+. .+|++.+++.+++|| +|...+.+.... +..+++++ ++++++++++||+.+.
T Consensus 153 ~ii~~s~~~~~~~~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~------~~~~~~~~--~~~~~vl~~~gr~~~~~ 219 (375)
T 3beo_A 153 LHFSPTAKSATNLQ-----KENKDESRIFITGNTAIDALKTTVKETY------SHPVLEKL--GNNRLVLMTAHRRENLG 219 (375)
T ss_dssp EEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHCCSSC------CCHHHHTT--TTSEEEEEECCCGGGTT
T ss_pred eeeCCCHHHHHHHH-----HcCCCcccEEEECChhHhhhhhhhhhhh------hHHHHHhc--cCCCeEEEEecccccch
Confidence 77777777665554 357777889999999 787665432100 12344444 3566778899999875
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~ 360 (470)
||++.+++|++++.+ ++|++++++ |.|+. ....+.+++++ +..++|+|+|+. .++..+|+.||++
T Consensus 220 K~~~~li~a~~~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~ 286 (375)
T 3beo_A 220 EPMRNMFRAIKRLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARSYLM 286 (375)
T ss_dssp HHHHHHHHHHHHHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTCSEE
T ss_pred hHHHHHHHHHHHHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhCcEE
Confidence 999999999998855 347888655 65531 12334444332 333689997764 4899999999999
Q ss_pred EEccCCcccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012132 361 VQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 361 v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
|+|| |.+++|||+||+|||+++. |+.+|++.++ +|+++++ | +++|+++|.++++|++.+++|++++++
T Consensus 287 v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~~~~~~~~~~ 355 (375)
T 3beo_A 287 LTDS-------GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAHDKMSKASNP 355 (375)
T ss_dssp EECC-------HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHCCCCCT
T ss_pred EECC-------CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhHhhhhhcCCC
Confidence 9988 5669999999999999964 8999998877 9999986 6 999999999999999999999999988
Q ss_pred HHHHHcChhHHHHHHHHHHH
Q 012132 440 RVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~ 459 (470)
+. +.|+|+++++.+.++++
T Consensus 356 ~~-~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 356 YG-DGRASERIVEAILKHFN 374 (375)
T ss_dssp TC-CSCHHHHHHHHHHHHTT
T ss_pred CC-CCcHHHHHHHHHHHHhh
Confidence 76 56999999999887764
|
| >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=256.60 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=171.6
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
..++.+||||||.+.|.+......... .+++|++++ ++.+|+++||+.+.||++.+++|++++.+..++. ..+
T Consensus 218 ~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~---~~~ 290 (482)
T 1uqt_A 218 AFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH---HGK 290 (482)
T ss_dssp EEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGG---TTT
T ss_pred EEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccc---cCc
Confidence 457899999999999876432111111 356788886 6788999999999999999999999987633221 125
Q ss_pred eEEEEEeCCCCcChH----HHHHHHHHHHhcC----CC--CcEEE-ecc--cCCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 309 VHAVIIGSDMNAQTK----FESELRNYVMQKK----IQ--DRVHF-VNK--TLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~----~~~~l~~~~~~~~----l~--~~V~~-~g~--~~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
++|+++|.+...+.+ +.+++++++.+++ .. ..|+| .|. .+++..+|+.||+||+||. .||||+++
T Consensus 291 v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~--~EGfgLv~ 368 (482)
T 1uqt_A 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVA 368 (482)
T ss_dssp EEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCS--SBSCCHHH
T ss_pred EEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCC--cccCCchH
Confidence 889999974322223 3455566655432 21 13665 464 3889999999999999999 99999999
Q ss_pred HHHHhcCC-----CEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcChhH
Q 012132 376 IEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHH 449 (470)
Q Consensus 376 lEAma~G~-----PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~ 449 (470)
+||||||+ |+|+|+.+|..+.+ + +|+++++.| +++++++|.+++++ ++.++++++++++++.+ |||+.
T Consensus 369 lEAmA~g~~~~~gpvV~S~~~G~~~~l-~--~g~lv~p~d--~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~-~s~~~ 442 (482)
T 1uqt_A 369 KEYVAAQDPANPGVLVLSQFAGAANEL-T--SALIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIVK-NDINH 442 (482)
T ss_dssp HHHHHHSCTTSCCEEEEETTBGGGGTC-T--TSEEECTTC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCCCHHHh-C--CeEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCHHH
Confidence 99999997 89999988887777 2 789999999 99999999999984 67889999999999866 99999
Q ss_pred HHHHHHHHHHHH
Q 012132 450 MAERIAVVLKEV 461 (470)
Q Consensus 450 ~~~~~~~~~~~~ 461 (470)
+++++++.|+++
T Consensus 443 ~a~~~l~~l~~~ 454 (482)
T 1uqt_A 443 WQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999999876
|
| >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=259.46 Aligned_cols=305 Identities=14% Similarity=0.111 Sum_probs=209.9
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec--------ccc--chh--------------------hhhc
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--------GHY--FKL--------------------DYVK 198 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------~~~--~~~--------------------~~~~ 198 (470)
.+|||+|+|....+.....+... .+ .++.++++|... +.. +.. ..+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~-~~--~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR-RI--DVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT-TC--SCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh-CC--CCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 55999999997776654443322 22 368999999862 211 000 0111
Q ss_pred ccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhH-HHHHHHHHHH----HHH----cCCC-C
Q 012132 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN-VAKRVLREHV----RES----LGVR-N 268 (470)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~-~~~~~~~~~~----r~~----~~~~-~ 268 (470)
....++.++++|..++..... -++.+...+ ||||+|.+.|.+.... ..+...|.++ |.. ++++ +
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~----Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEH----LLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHH----HTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHhCCEEEECCHHHHHHHHH----HhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 223667888888888776554 445555533 9999999998774211 1111223333 332 2454 3
Q ss_pred CCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcCh-------------------------
Q 012132 269 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT------------------------- 322 (470)
Q Consensus 269 ~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~------------------------- 322 (470)
+.++++.+||++ ..||+|++++|+.++...++..+.+..-+.|+|+..+.....
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 456677789999 689999999999999887766554556678888877632200
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHhcCCCCc---
Q 012132 323 -----------------------------------------------------------KFESELRNYVMQKKIQDR--- 340 (470)
Q Consensus 323 -----------------------------------------------------------~~~~~l~~~~~~~~l~~~--- 340 (470)
...+.+...++++++.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 011223334455666555
Q ss_pred ---EEEec-cc--------CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecC-------c
Q 012132 341 ---VHFVN-KT--------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG-------T 401 (470)
Q Consensus 341 ---V~~~g-~~--------~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~-------~ 401 (470)
|.|++ +. .++.++|+.||++|+||. +|+||++++||||||+|||+|+.||.+|++.++ .
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~ 568 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKD 568 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHH
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCC
Confidence 56664 32 368999999999999999 999999999999999999999999999998775 3
Q ss_pred eeeeecCCC-CChHHHHHHHHHHH----h-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhh
Q 012132 402 TGLLHPVGK-EGITPLAKNIVKLA----T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465 (470)
Q Consensus 402 ~G~l~~~~d-~~~~~la~~i~~ll----~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~ 465 (470)
+|+++.+.+ .++++++++|.+++ + ++..+..+++++++.+ +.|||++++++|+++|++++.+.
T Consensus 569 tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 569 YGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp TTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhc
Confidence 698885421 12666555555554 3 6778889999888766 56999999999999999998653
|
| >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-31 Score=231.13 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=164.5
Q ss_pred EecCCchhhhh--HhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHH--HHHHhhcccCCce
Q 012132 235 VHLGNSKELME--VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESL--ELIKEKKLEVPSV 309 (470)
Q Consensus 235 i~ngvd~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~--~~l~~~~~~~~~~ 309 (470)
||||+|.+.|. +... .....+..+|+++|++++ .+|+++|++. +.||++.+++++..+. + +.+++
T Consensus 2 ipngvd~~~f~~~~~~~--~~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTG--SRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCS--CHHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhcccccccc--chhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 79999999997 6531 011224678999999754 5889999999 9999999999999874 3 34799
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE-ecccC--CHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~-~g~~~--~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+|+|+|.+.+ .+.+.+++++++++ +|+| +|+++ ++..+|+.||++|+||. .|+||++++|||++|+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999999821 27888999999886 8999 99975 99999999999999999 8999999999999999999
Q ss_pred ecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcC
Q 012132 387 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 387 ~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs 446 (470)
+++.++..|++ ++.+|++++++| +++++++|.++++ |++.++++++++++++.+ ||
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 899999999988 9999999999999 999999999999999988 86
|
| >2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=239.48 Aligned_cols=309 Identities=8% Similarity=0.051 Sum_probs=211.9
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhccee--e-EecC---ChhhHHhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISAK---GQETINTA 148 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~~~~~~~~ 148 (470)
.+|++.+.+. |..+.+..|+++|.++| +|.+.+..... ..... ... .++. . ++.. ....+.+.
T Consensus 41 ~~iwih~~s~---G~~~~~~~L~~~L~~~~-~v~v~~~~~~~--~~~~~----~~~-~~v~~~~~~p~~~~~~l~~~l~~ 109 (374)
T 2xci_A 41 GALWVHTASI---GEFNTFLPILKELKREH-RILLTYFSPRA--REYLK----TKS-DFYDCLHPLPLDNPFSVKRFEEL 109 (374)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHHHHS-CEEEEESCGGG--HHHHH----TTG-GGCSEEEECCCSSHHHHHHHHHH
T ss_pred CCEEEEcCCH---HHHHHHHHHHHHHHhcC-CEEEEEcCCcH--HHHHH----Hhc-ccccceeECCCCCHHHHHHHHHH
Confidence 4576665333 66789999999999998 88766543211 11111 111 2332 2 2221 23456677
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhccC
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (470)
.+||+||++.... |...+.. ... |++...+..... ..+...+...+.+++.|....+.+. .+|++
T Consensus 110 ~~pDiv~~~~~~~--~~~~~~~--~~~---p~~~~~~~~~~~---~~~~~~~~~~d~ii~~S~~~~~~l~-----~~g~~ 174 (374)
T 2xci_A 110 SKPKALIVVEREF--WPSLIIF--TKV---PKILVNAYAKGS---LIEKILSKKFDLIIMRTQEDVEKFK-----TFGAK 174 (374)
T ss_dssp HCCSEEEEESCCC--CHHHHHH--CCS---CEEEEEECCCCC---HHHHHHHTTCSEEEESCHHHHHHHH-----TTTCC
T ss_pred hCCCEEEEECccC--cHHHHHH--HhC---CEEEEEeecCch---HHHHHHHHhCCEEEECCHHHHHHHH-----HcCCC
Confidence 8999999754221 1111111 111 333333322111 1233445677888888888876654 34665
Q ss_pred CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCc
Q 012132 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (470)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 308 (470)
++.+++|+. |.+.... ++. + ..+++++.|+ ..||++.+++|++++.+ ++|+
T Consensus 175 --ki~vi~n~~----f~~~~~~----------~~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~-------~~p~ 225 (374)
T 2xci_A 175 --RVFSCGNLK----FICQKGK----------GIK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKK-------TYSS 225 (374)
T ss_dssp --SEEECCCGG----GCCCCCS----------CCC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHT-------TCTT
T ss_pred --eEEEcCCCc----cCCCcCh----------hhh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHh-------hCCC
Confidence 899999973 2111100 000 1 1245655554 46899999999998854 5689
Q ss_pred eEEEEEeCCCCcChHHH-HHHHHHHHhcCCC--------CcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHH
Q 012132 309 VHAVIIGSDMNAQTKFE-SELRNYVMQKKIQ--------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~-~~l~~~~~~~~l~--------~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
++|+|+|+| +.+ ++++++++++|+. ++|.+.|..+++..+|+.||++++||.. .|++|++++|||
T Consensus 226 ~~lvivG~g-----~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~-~e~gg~~~lEAm 299 (374)
T 2xci_A 226 LKLILVPRH-----IENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTF-VNIGGHNLLEPT 299 (374)
T ss_dssp CEEEEEESS-----GGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSS-SSSCCCCCHHHH
T ss_pred cEEEEECCC-----HHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcc-cCCCCcCHHHHH
Confidence 999999988 444 6889999999886 5788989889999999999998888651 578899999999
Q ss_pred hcCCCEEec-CCCCcceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCh
Q 012132 380 AFQLPVLGT-AAGGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 447 (470)
Q Consensus 380 a~G~PvI~s-~~~g~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 447 (470)
|||+|||++ +.++.+|++.+. .+|++++++| +++|+++|.++++| +.+++|+++++++++++++.
T Consensus 300 A~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d--~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 300 CWGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKN--ETELVTKLTELLSV-KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp TTTCCEEECSCCTTSHHHHHHHHHTTCEEECCS--HHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCEEECCCccChHHHHHHHHHCCCEEEeCC--HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcccH
Confidence 999999975 789999988653 5789999988 99999999999999 99999999999999876554
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=211.76 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=139.5
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--
Q 012132 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (470)
Q Consensus 270 ~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-- 347 (470)
+++|+++||+.+.||++.+++|+..+. +.++++|+|+|+| +..+.++++++++++ +|.| |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKG-----PDEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCS-----TTHHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCC-----ccHHHHHHHHHHcCC--eEEE-eecCH
Confidence 578999999999999999999998762 2379999999998 567899999999987 8999 985
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCC-CEEe-cCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~-s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
+++.++|+.||++|+||. .|+||++++|||++|+ |||+ ++.|+..+++.++ +.+++++| +++++++|.++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVIANSPLSATRQFALDE--RSLFEPNN--AKDLSAKIDWWLE 139 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSG--GGEECTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCC--ceEEcCCC--HHHHHHHHHHHHh
Confidence 789999999999999999 9999999999999998 9999 5688999999765 44888888 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcChhHHHHH
Q 012132 426 HVERRLTMGKRGYERVKEIFQEHHMAER 453 (470)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 453 (470)
|++.++++++++++++ ++|+|++++++
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 140 NKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp CHHHHHHHHHHHHHHH-HHHC-------
T ss_pred CHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 9999999999999988 77999998764
|
| >3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=232.02 Aligned_cols=287 Identities=12% Similarity=0.052 Sum_probs=210.4
Q ss_pred CCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc---------chhhhhcccccccceeeeehhhHHHHHHh
Q 012132 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (470)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (470)
.-|+|.+|+....... ..++...+. .++.+.+|...+.. +.....+.+-.++.+...+......+.+.
T Consensus 149 ~~D~VwVhDYhL~llp-~~lR~~~~~--~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVP-ALLREQRPD--APILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHH-HHHHHHCTT--SCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHH-HHHHhhCCC--CeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 5789999997765433 344444443 47888888654432 11223344455666666666666665554
Q ss_pred hhhhh-ccC-------------CCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHH
Q 012132 221 TRERL-RIK-------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (470)
Q Consensus 221 ~~~~~-~~~-------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~ 286 (470)
..+.+ +.+ ..++.++|+|||.+.|.+.... .++++|++++ ++.+|+++||+.+.||++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----~~~~lr~~~~---~~~lIl~VgRLd~~KGi~ 297 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----LPEGIEEWAD---GHRLVVHSGRTDPIKNAE 297 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----CCTTHHHHHT---TSEEEEEEEESSGGGCHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----HHHHHHHHhC---CceEEEEcccCccccCHH
Confidence 44444 322 1367899999999999765321 1256777776 678899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCc---eEEEEEeCCCCcChHH----HHHHHHHHHhcC----CCCcEEEeccc--CCHHHH
Q 012132 287 LFLHSFYESLELIKEKKLEVPS---VHAVIIGSDMNAQTKF----ESELRNYVMQKK----IQDRVHFVNKT--LTVAPY 353 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~---~~l~ivG~g~~~~~~~----~~~l~~~~~~~~----l~~~V~~~g~~--~~~~~~ 353 (470)
.+++|+ ++.+ ++|+ +.|+++|.....+.+. ..++++++.+.+ .. .|+|+|.. +++..+
T Consensus 298 ~lL~Af-~ll~-------~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~al 368 (496)
T 3t5t_A 298 RAVRAF-VLAA-------RGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIAC 368 (496)
T ss_dssp HHHHHH-HHHH-------HTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHH
T ss_pred HHHHHH-HHHH-------hCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHH
Confidence 999999 8866 3354 6788887543222233 445555555442 22 69999974 789999
Q ss_pred HHhcCEEEEccCCcccccchHHHHHHhcC---CCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC-HHH
Q 012132 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ---LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VER 429 (470)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G---~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~ 429 (470)
|+.||++++||. .||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.| +++++++|.+++++ ++.
T Consensus 369 y~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 442 (496)
T 3t5t_A 369 FRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFD--LVEQAEAISAALAAGPRQ 442 (496)
T ss_dssp HHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTB--HHHHHHHHHHHHHCCHHH
T ss_pred HHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCC--HHHHHHHHHHHHcCCHHH
Confidence 999999999999 999999999999997 899999999988887 35799999999 99999999999996 577
Q ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 430 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 430 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
++++.++.++++.+ ++...+++.+++-++..-.
T Consensus 443 r~~r~~~~~~~V~~-~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 443 RAEAAARRRDAARP-WTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp HHHHHHHHHHHHTT-CBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCHHHHHHHHHHHHhhccc
Confidence 88888999999855 9999999999988877643
|
| >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=234.61 Aligned_cols=332 Identities=13% Similarity=0.030 Sum_probs=212.1
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee-Eec------------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISA------------ 139 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------ 139 (470)
||||++++...+..| ....++++|.+. ||+|.+++..... .. ........++.. +..
T Consensus 5 mmkIl~v~~~~~~~~---~~~~l~~~L~~~~g~~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (376)
T 1v4v_A 5 MKRVVLAFGTRPEAT---KMAPVYLALRGIPGLKPLVLLTGQHR--EQ----LRQALSLFGIQEDRNLDVMQERQALPDL 75 (376)
T ss_dssp CEEEEEEECSHHHHH---HHHHHHHHHHTSTTEEEEEEECSSCH--HH----HHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred ceEEEEEEeccHHHH---HHHHHHHHHHhCCCCceEEEEcCCcH--HH----HHHHHHHcCCCcccccccCCCCccHHHH
Confidence 489999996543222 356789999998 8998877643211 10 011112223221 111
Q ss_pred -----CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccc-----hhhhhcc-cccccceee
Q 012132 140 -----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-----KLDYVKH-LPLVAGAMI 208 (470)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~-----~~~~~~~-~~~~~~~~~ 208 (470)
.....+.+..+||+||+|......+......... ..|+++..++...... .....+. ....+.+++
T Consensus 76 ~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~---~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (376)
T 1v4v_A 76 AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLE---GIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFA 152 (376)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHT---TCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHh---CCCEEEEeCCCccccccCCCchHHHHHHHHHHhceeeC
Confidence 0123445678999999987543323222222111 1355433333211100 0011111 123455666
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 287 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ 287 (470)
.+....+.+. .+|++.+++.+++|++ |...+... +..++++++ +++++++++||+...||++.
T Consensus 153 ~s~~~~~~l~-----~~g~~~~ki~vi~n~~~d~~~~~~~---------~~~~~~~~~--~~~~vl~~~gr~~~~k~~~~ 216 (376)
T 1v4v_A 153 PTPLAKANLL-----KEGKREEGILVTGQTGVDAVLLAAK---------LGRLPEGLP--EGPYVTVTMHRRENWPLLSD 216 (376)
T ss_dssp SSHHHHHHHH-----TTTCCGGGEEECCCHHHHHHHHHHH---------HCCCCTTCC--SSCEEEECCCCGGGGGGHHH
T ss_pred CCHHHHHHHH-----HcCCCcceEEEECCchHHHHhhhhh---------hhHHHHhcC--CCCEEEEEeCcccchHHHHH
Confidence 6666655444 3477778899999975 32222110 112333332 45677888999988889999
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEcc
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (470)
+++|++++.+ ++|+++++++ |++. +..+.+++++.. .++|+|+|+. .++..+|+.||++|.||
T Consensus 217 ll~a~~~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~~S 282 (376)
T 1v4v_A 217 LAQALKRVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVTDS 282 (376)
T ss_dssp HHHHHHHHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEESC
T ss_pred HHHHHHHHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEECC
Confidence 9999998855 3478898886 6551 256677766542 3589999542 38999999999999988
Q ss_pred CCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 365 QAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
+ |+ ++|||++|+|||++ +.++..+++.++ +|++++. | +++|+++|.++++|++.+++|++++ +
T Consensus 283 ----~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~-----~ 346 (376)
T 1v4v_A 283 ----G--GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAGT-D--PEGVYRVVKGLLENPEELSRMRKAK-----N 346 (376)
T ss_dssp ----H--HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHTCHHHHHHHHHSC-----C
T ss_pred ----c--CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECCC-C--HHHHHHHHHHHHhChHhhhhhcccC-----C
Confidence 2 44 88999999999987 578888887554 8998863 5 9999999999999999999998643 3
Q ss_pred HcChhHHHHHHHHHHHHHHH
Q 012132 444 IFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~l~ 463 (470)
.|.+...++++.+.+.+++.
T Consensus 347 ~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 347 PYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 47787888888888888775
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=203.82 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=134.8
Q ss_pred cCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHH--hcCCCCcE
Q 012132 264 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM--QKKIQDRV 341 (470)
Q Consensus 264 ~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~--~~~l~~~V 341 (470)
+.++.++++|+++|++.+.||++.+++|+..+ ++++|+|+|++. ..+.++++++ ++++.++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~-----~~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFS-----KGDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCC-----TTSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCc-----cHHHHHHHHHhhhcccCCcE
Confidence 45667888999999999999999999999876 689999999984 3457778888 78888999
Q ss_pred EEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHH
Q 012132 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 419 (470)
Q Consensus 342 ~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (470)
+|+|++ +++..+|+.||++|+||. .|+||++++|||+||+|||+++.++..|++.++.+|+++ ++| +++++++
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d--~~~l~~~ 155 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NAD--VNEIIDA 155 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSC--HHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCC--HHHHHHH
Confidence 999997 459999999999999999 999999999999999999999999999999999999999 777 9999999
Q ss_pred HHHHHhCHHH-HHHHHHHH
Q 012132 420 IVKLATHVER-RLTMGKRG 437 (470)
Q Consensus 420 i~~ll~~~~~-~~~~~~~a 437 (470)
|.++++|++. ++++.+++
T Consensus 156 i~~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 156 MKKVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp HHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 9999998875 44443333
|
| >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=194.38 Aligned_cols=340 Identities=13% Similarity=0.106 Sum_probs=207.3
Q ss_pred ccccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhccee------eEec-----
Q 012132 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ------VISA----- 139 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----- 139 (470)
|+||||++++..-+ +-..+..++++|+++ |+++.++....... . ....+...++. +...
T Consensus 23 ~~m~ki~~v~Gtr~---~~~~~a~li~~l~~~~~~~~~~~~tG~h~~---~---~~~~~~~~~i~~~~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 23 NAMKKVLIVFGTRP---EAIKMAPLVQQLCQDNRFVAKVCVTGQHRE---M---LDQVLELFSITPDFDLNIMEPGQTLN 93 (396)
T ss_dssp -CCEEEEEEECSHH---HHHHHHHHHHHHHHCTTEEEEEEECCSSSH---H---HHHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred CCCCeEEEEEeccH---hHHHHHHHHHHHHhCCCCcEEEEEecccHH---H---HHHHHHhcCCCCceeeecCCCCCCHH
Confidence 55689999985432 124567889999887 78887655332221 0 11111222221 1000
Q ss_pred -------CChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-cc---chhhhhcc--cccccce
Q 012132 140 -------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-HY---FKLDYVKH--LPLVAGA 206 (470)
Q Consensus 140 -------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~~---~~~~~~~~--~~~~~~~ 206 (470)
.....+.+..+||+||++......+........ ..+|++...++... .+ +.....+. ....+.+
T Consensus 94 ~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~---~~IPv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~ 170 (396)
T 3dzc_A 94 GVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYY---QQIPVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYH 170 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHT---TTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHH---hCCCEEEEECCccccccccCCcHHHHHHHHHHhcCEE
Confidence 112355567899999998755443332222111 11344432222211 11 11111221 1234555
Q ss_pred eeeehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcC-CCCC-CeEEEEEeecc-cC
Q 012132 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRNE-DLLFAIINSVS-RG 282 (470)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~i~~vGrl~-~~ 282 (470)
++.+....+.+. +.|++++++.+++|++ |...+.+... ......++++|+++| ++++ ++++++.+|.. ..
T Consensus 171 ~~~se~~~~~l~-----~~G~~~~ki~vvGn~~~d~~~~~~~~~-~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~ 244 (396)
T 3dzc_A 171 FAPTDTSRANLL-----QENYNAENIFVTGNTVIDALLAVREKI-HTDMDLQATLESQFPMLDASKKLILVTGHRRESFG 244 (396)
T ss_dssp EESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHH-HHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCT
T ss_pred ECCCHHHHHHHH-----HcCCCcCcEEEECCcHHHHHHHhhhhc-ccchhhHHHHHHHhCccCCCCCEEEEEECCcccch
Confidence 666666555444 4588888999999864 3322221110 000111367889999 4544 45555555643 45
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
|+++.+++|+.++.+ ++|++++++. |.++ ...+.++++ ++..++|++.++. .++..+|+.||+
T Consensus 245 ~~~~~ll~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~ad~ 310 (396)
T 3dzc_A 245 GGFERICQALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRAHI 310 (396)
T ss_dssp THHHHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHCSE
T ss_pred hHHHHHHHHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhcCE
Confidence 789999999998865 4588998886 5441 234444443 3445689998875 578899999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+|.+| | |+ .+|||++|+|||++ +.++.+|++.+| .+++++. | ++++++++.++++|++.+++|++++.
T Consensus 311 vv~~S-----G-g~-~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~~~~m~~~~~ 379 (396)
T 3dzc_A 311 ILTDS-----G-GI-QEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQAYQAMSQAHN 379 (396)
T ss_dssp EEESC-----S-GG-GTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHHHHHHHTSCC
T ss_pred EEECC-----c-cH-HHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHHHHHHhhccC
Confidence 99887 1 43 38999999999999 688888888776 5677764 5 99999999999999999999987654
Q ss_pred HHHHHHcChhHHHHHHHHHHH
Q 012132 439 ERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~ 459 (470)
. |.....++++.+++.
T Consensus 380 ~-----~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 380 P-----YGDGKACQRIADILA 395 (396)
T ss_dssp T-----TCCSCHHHHHHHHHH
T ss_pred C-----CcCChHHHHHHHHHh
Confidence 3 556666666666543
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-22 Score=192.94 Aligned_cols=165 Identities=12% Similarity=0.116 Sum_probs=129.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
+++.++++.|++. .++.+.+.++++.+.+ .+.++++++++... .+.++ +++++|.+.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~~----~~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSLD----VSGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSCC----CTTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCCC----hhhhc------cCCCcEEEeCCC
Confidence 4557778889886 7788877777776632 35677777665321 11111 346799999998
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
++.++|+.||++|.+|- +.+++|||++|+|+|+.+.++ ..+.+.+.++|+++++++.++++|+++|.++
T Consensus 301 -~~~~~l~~ad~~v~~~g------~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~l 373 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHGG------SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRL 373 (412)
T ss_dssp -CHHHHGGGCSEEEESCC------HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHH
T ss_pred -CHHHHHhcCcEEEECCc------hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 89999999999996653 479999999999999976654 6777778889999998733399999999999
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
++|++.++++++.+++... .++++++++.+++++.+
T Consensus 374 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 374 LAEESYRAGARAVAAEIAA-MPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHCHHHHHHHHHHHHHHHH-SCCHHHHHTTHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 9999999999999888764 48999999999888754
|
| >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=188.83 Aligned_cols=339 Identities=13% Similarity=0.108 Sum_probs=205.5
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcce------eeEe----
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVIS---- 138 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---- 138 (470)
.|+||||++++..-+- -..+..++++|+++ |+++.++........ ....+...++ .+..
T Consensus 24 ~m~~~kI~~v~Gtr~~---~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m------~~~~~~~~~i~~~~~l~v~~~~~~ 94 (403)
T 3ot5_A 24 AMAKIKVMSIFGTRPE---AIKMAPLVLALEKEPETFESTVVITAQHREM------LDQVLEIFDIKPDIDLDIMKKGQT 94 (403)
T ss_dssp --CCEEEEEEECSHHH---HHHHHHHHHHHHTCTTTEEEEEEECC-----------CHHHHHHTTCCCSEECCCCC-CCC
T ss_pred ccccceEEEEEecChh---HHHHHHHHHHHHhCCCCCcEEEEEecCcHHH------HHHHHHhcCCCCCcccccCCCCCC
Confidence 3566899999854321 24568899999987 688876653322111 1111122222 1100
Q ss_pred --------cCChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecc-cc---chh-hhhccccc-cc
Q 012132 139 --------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-HY---FKL-DYVKHLPL-VA 204 (470)
Q Consensus 139 --------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~-~~---~~~-~~~~~~~~-~~ 204 (470)
......+.+..+||+|+++......+........ ..+|++....+... .. +.. ..+..+.. .+
T Consensus 95 ~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~---~~IPv~h~~aglrs~~~~~~~p~~~~r~~~~~~a~ 171 (403)
T 3ot5_A 95 LAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFY---QQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMAD 171 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHH---TTCEEEEESCCCCCSCTTSSTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHH---hCCCEEEEECCccccccccCCcHHHHHHHHHHhcC
Confidence 0112355567999999998754333322111111 11344322222111 11 111 11122222 34
Q ss_pred ceeeeehhhHHHHHHhhhhhhccCCCceEEEecC-CchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeeccc-C
Q 012132 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR-G 282 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~-~ 282 (470)
.+++.+....+.+. +.|++++++.+++|+ +|...+.+.... +.+.++++ +++++++++.||... .
T Consensus 172 ~~~~~se~~~~~l~-----~~Gi~~~~i~vvGn~~~D~~~~~~~~~~------~~~~~~~l--~~~~~vlv~~~r~~~~~ 238 (403)
T 3ot5_A 172 IHFSPTKQAKENLL-----AEGKDPATIFVTGNTAIDALKTTVQKDY------HHPILENL--GDNRLILMTAHRRENLG 238 (403)
T ss_dssp EEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHSCTTC------CCHHHHSC--TTCEEEEECCCCHHHHT
T ss_pred EEECCCHHHHHHHH-----HcCCCcccEEEeCCchHHHHHhhhhhhc------chHHHHhc--cCCCEEEEEeCcccccC
Confidence 45555555555444 458888899999985 444333221100 12344445 455666777787643 5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEe-CCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCE
Q 012132 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 283 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
|+++.+++|+.++.+ ++|++++++.+ .++ ...+.++++ ++..++|+++|+. .++..+|+.||+
T Consensus 239 ~~l~~ll~a~~~l~~-------~~~~~~~v~~~~~~~----~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~ad~ 304 (403)
T 3ot5_A 239 EPMQGMFEAVREIVE-------SREDTELVYPMHLNP----AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKSYL 304 (403)
T ss_dssp THHHHHHHHHHHHHH-------HCTTEEEEEECCSCH----HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHHHHHH-------hCCCceEEEecCCCH----HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhcCE
Confidence 789999999998865 45889998874 431 133344433 3444689999986 489999999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
+|.+| |...+|||++|+|+|++ +.++..|.+..| +|++++. | ++++++++.++++|++.+++|++++.
T Consensus 305 vv~~S-------Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~~~~m~~~~~ 373 (403)
T 3ot5_A 305 VFTDS-------GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKESHDKMAQAAN 373 (403)
T ss_dssp EEECC-------HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHHHSCC
T ss_pred EEECC-------ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHHHHHHHhhcC
Confidence 99776 33348999999999999 678888887655 8888875 5 99999999999999999998876544
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 439 ERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 439 ~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
. |.....++++.+++.+.+..
T Consensus 374 ~-----~g~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 374 P-----YGDGFAANRILAAIKSHFEE 394 (403)
T ss_dssp T-----TCCSCHHHHHHHHHHHHHTC
T ss_pred c-----ccCCcHHHHHHHHHHHHhCC
Confidence 3 56666677777777776653
|
| >3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=182.61 Aligned_cols=319 Identities=13% Similarity=0.069 Sum_probs=188.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC------------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------ 140 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 140 (470)
|++||++... ..||--.-...++++|+++||+|.+++...+-+ .......|+++....
T Consensus 1 M~~~i~i~~G--GTgGHi~palala~~L~~~g~~V~~vg~~~g~e--------~~~v~~~g~~~~~i~~~~~~~~~~~~~ 70 (365)
T 3s2u_A 1 MKGNVLIMAG--GTGGHVFPALACAREFQARGYAVHWLGTPRGIE--------NDLVPKAGLPLHLIQVSGLRGKGLKSL 70 (365)
T ss_dssp --CEEEEECC--SSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTH--------HHHTGGGTCCEEECC------------
T ss_pred CCCcEEEEcC--CCHHHHHHHHHHHHHHHhCCCEEEEEECCchHh--------hchhhhcCCcEEEEECCCcCCCCHHHH
Confidence 4678988652 112223447889999999999999998654321 111223333332211
Q ss_pred ------------ChhhHHhhcCCcEEEEcccchhhhHHHH-hhhcCCccccceeeEEeeeccccchhhhhccccccccee
Q 012132 141 ------------GQETINTALKADLIVLNTAVAGKWLDAV-LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (470)
Q Consensus 141 ------------~~~~~~~~~~~DiV~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (470)
....+.++.+||+|+++..........+ ...+ .|++ +|+..... . ...+.+......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~-----iP~v--ihe~n~~~-G-~~nr~l~~~a~~v 141 (365)
T 3s2u_A 71 VKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNG-----VPLV--IHEQNAVA-G-TANRSLAPIARRV 141 (365)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTT-----CCEE--EEECSSSC-C-HHHHHHGGGCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcC-----CCEE--EEecchhh-h-hHHHhhcccccee
Confidence 1123456789999999876544332222 2222 3444 35432111 0 1111111122222
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEE-EEEeecccCCCHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINSVSRGKGQD 286 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~vGrl~~~Kg~~ 286 (470)
..+... .+ ...+++.++.|++..+.+... +.+.+++.+++.+ ++.|++...+..+
T Consensus 142 ~~~~~~----------~~-~~~~k~~~~g~pvr~~~~~~~-------------~~~~~~~~~~~~ilv~gGs~g~~~~~~ 197 (365)
T 3s2u_A 142 CEAFPD----------TF-PASDKRLTTGNPVRGELFLDA-------------HARAPLTGRRVNLLVLGGSLGAEPLNK 197 (365)
T ss_dssp EESSTT----------SS-CC---CEECCCCCCGGGCCCT-------------TSSCCCTTSCCEEEECCTTTTCSHHHH
T ss_pred eecccc----------cc-cCcCcEEEECCCCchhhccch-------------hhhcccCCCCcEEEEECCcCCccccch
Confidence 222111 11 134567788888887765432 2234555555544 4456777777777
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (470)
.+.++++.+.. ..+..+++ +|.+ ..+.+.+..++.+. ++.+.++.+++.++|+.||++|..+
T Consensus 198 ~~~~al~~l~~--------~~~~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra- 260 (365)
T 3s2u_A 198 LLPEALAQVPL--------EIRPAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA- 260 (365)
T ss_dssp HHHHHHHTSCT--------TTCCEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC-
T ss_pred hhHHHHHhccc--------ccceEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC-
Confidence 77777765521 13444444 4443 34556666666654 6888999999999999999999433
Q ss_pred CcccccchHHHHHHhcCCCEEecCCCCc--------ceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 437 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 437 (470)
-++++.|+|++|+|+|..+.+.. .+.+.+.+.|++++..+.++++|+++|.++++|++.+++|++++
T Consensus 261 -----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a 335 (365)
T 3s2u_A 261 -----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQA 335 (365)
T ss_dssp -----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred -----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 37899999999999998876532 23455666889988776668999999999999999999999999
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHH
Q 012132 438 YERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 438 ~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++... ...++++.+.+.++
T Consensus 336 ~~~~~-----~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 336 RSLAK-----PEATRTVVDACLEV 354 (365)
T ss_dssp HHTCC-----TTHHHHHHHHHHHH
T ss_pred HhcCC-----ccHHHHHHHHHHHH
Confidence 87542 23344444444444
|
| >3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=173.77 Aligned_cols=289 Identities=9% Similarity=0.032 Sum_probs=189.9
Q ss_pred CchhHHHHHHHHHHHhCCceEEEEecCCC-CCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEEEEcccchhh--
Q 012132 87 SGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGK-- 163 (470)
Q Consensus 87 ~G~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~-- 163 (470)
.+|...-.+..+-+.+.|++-.-+..... .... ..+...+. ..+....++|+|+.++|....
T Consensus 25 ~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~---~~~~~~~~------------~~~~~~~~~DvIi~q~P~~~~~~ 89 (339)
T 3rhz_A 25 STAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSE---SELSKRLD------------GIVAGLRHGDVVIFQTPTWNTTE 89 (339)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCH---HHHHHHHH------------HHTTTCCTTCEEEEEECCSSCHH
T ss_pred chHHHHHHHHHHHHHHCCCeEEEeeccccccccH---HHHHHHHH------------HHHhcCCCCCEEEEeCCCcchhh
Confidence 45567777777778888987554442211 1111 01111111 012234689999999876421
Q ss_pred hHHHHhhhcCCccccceeeEEeeeccccchh------hhhcccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEec
Q 012132 164 WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 237 (470)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~n 237 (470)
+....+.. ++....++++.+|+..+..+.. .....++.++.+++.|....+.+.+ .|++..++.++++
T Consensus 90 ~~~~~~~~-lk~~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~-----~G~~~~ki~~~~~ 163 (339)
T 3rhz_A 90 FDEKLMNK-LKLYDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRD-----FGMNVSKTVVQGM 163 (339)
T ss_dssp HHHHHHHH-HTTSSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHHH-----TTCCCSEEEECCS
T ss_pred HHHHHHHH-HHhcCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHHH-----cCCCcCceeecCC
Confidence 21222222 1222478999999987644321 1234567889999999988777663 4776666654443
Q ss_pred CCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCC
Q 012132 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 317 (470)
Q Consensus 238 gvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g 317 (470)
. |... +.+ ...+.++++++|+|++.....+..+ .++++|+|+|+|
T Consensus 164 ~-~~~~--~~~---------------~~~~~~~~~i~yaG~l~k~~~L~~l-----------------~~~~~f~ivG~G 208 (339)
T 3rhz_A 164 W-DHPT--QAP---------------MFPAGLKREIHFPGNPERFSFVKEW-----------------KYDIPLKVYTWQ 208 (339)
T ss_dssp C-CCCC--CCC---------------CCCCEEEEEEEECSCTTTCGGGGGC-----------------CCSSCEEEEESC
T ss_pred C-CccC--ccc---------------ccccCCCcEEEEeCCcchhhHHHhC-----------------CCCCeEEEEeCC
Confidence 2 2110 000 0122356889999999853222211 178999999999
Q ss_pred CCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCC-----cccccchHHHHHHhcCCCEEecCC
Q 012132 318 MNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-----WGECFGRITIEAMAFQLPVLGTAA 390 (470)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~-----~~E~~g~~~lEAma~G~PvI~s~~ 390 (470)
+.. .++ +|+|+|++ +++..+|+.+|+.++.... ...++|.++.||||||+|||+++.
T Consensus 209 ~~~---------------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~ 272 (339)
T 3rhz_A 209 NVE---------------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEG 272 (339)
T ss_dssp CCC---------------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETT
T ss_pred ccc---------------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccC
Confidence 521 244 89999986 8899999988888876220 012568999999999999999999
Q ss_pred CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHH
Q 012132 391 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 454 (470)
Q Consensus 391 ~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 454 (470)
++..+++.++.+|++++ + .++++++|..+ +++.+++|++++++..++ +++..+.++.
T Consensus 273 ~~~~~~v~~~~~G~~~~--~--~~e~~~~i~~l--~~~~~~~m~~na~~~a~~-~~~~~f~k~~ 329 (339)
T 3rhz_A 273 IANQELIENNGLGWIVK--D--VEEAIMKVKNV--NEDEYIELVKNVRSFNPI-LRKGFFTRRL 329 (339)
T ss_dssp CTTTHHHHHHTCEEEES--S--HHHHHHHHHHC--CHHHHHHHHHHHHHHTHH-HHTTHHHHHH
T ss_pred hhHHHHHHhCCeEEEeC--C--HHHHHHHHHHh--CHHHHHHHHHHHHHHHHH-hhccHHHHHH
Confidence 99999999999999987 3 88999999886 466789999999987654 7777666544
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=187.19 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=108.1
Q ss_pred CCCeEEEEEeecccCC----------CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC
Q 012132 268 NEDLLFAIINSVSRGK----------GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~K----------g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (470)
.++.+++++|++...| .++.+++++.+ .++++++++++. ..+.++ .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~~-----~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSDK-----LAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCCc-----chhhhc------cC
Confidence 4567888899996554 35555555542 357888888762 233332 34
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC----CCcceeeecCceeeeecCCCCCh
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGI 413 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~~d~~~ 413 (470)
+++|++.|+. ++.++++.||++|. .+.+.+++|||++|+|+|+... .+..+.+.+.+.|+++++++.++
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~------~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 355 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVH------HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGV 355 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC------
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEe------cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCH
Confidence 6899999997 68999999999993 4447899999999999999544 45677788888999998774348
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Q 012132 414 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 455 (470)
Q Consensus 414 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 455 (470)
++|+++|.++++|++.++++++.+++.. +..+++.+++.++
T Consensus 356 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 356 ESVLAACARIRDDSSYVGNARRLAAEMA-TLPTPADIVRLIE 396 (398)
T ss_dssp -CHHHHHHHHHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHh
Confidence 9999999999999999999988888765 4488888887764
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=180.31 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=121.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEE-EEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
++..+++++|++. .++.+.+.+++..+. +.+++++ +++|++. ..+.++ .++++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~--------~~~~~~~~~~~G~~~-----~~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFG--------NLPGWHLVLQIGRKV-----TPAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHT--------TCTTEEEEEECC--------CGGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHh--------cCCCeEEEEEeCCCC-----ChHHhc------cCCCCeEEEec
Confidence 3457888899987 555555544444331 1146777 5678763 122221 24578999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
.++. ++|+.+|++|..+- +++++|||++|+|+|+++.++ ..+.+.+.+.|++++.++.++++|+++|.+
T Consensus 291 ~~~~-~~l~~ad~~v~~~G------~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ 363 (430)
T 2iyf_A 291 VPQL-AILRQADLFVTHAG------AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALA 363 (430)
T ss_dssp CCHH-HHHTTCSEEEECCC------HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHH
T ss_pred CCHH-HHhhccCEEEECCC------ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 8777 89999999996553 479999999999999998765 455566777899998774348999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
+++|++.++++++.+++... .++++++++.+++++++..
T Consensus 364 ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 364 LVDDPEVARRLRRIQAEMAQ-EGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHTTSCC--
T ss_pred HHcCHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHhhccc
Confidence 99999999999998888665 4899999999988876654
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=178.52 Aligned_cols=164 Identities=11% Similarity=0.108 Sum_probs=122.5
Q ss_pred CCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~-~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
++.++++.|+....|+. ..+++++.+. + +.|+++++++|++. ..+.++ +++++|++.|+.
T Consensus 218 ~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~-----~~~~l~------~~~~~v~~~~~~ 278 (391)
T 3tsa_A 218 ARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPE-----HRALLT------DLPDNARIAESV 278 (391)
T ss_dssp SEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGG-----GGGGCT------TCCTTEEECCSC
T ss_pred CCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCc-----chhhcc------cCCCCEEEeccC
Confidence 45677778988765544 6677776655 4 45789999998862 222221 356799999986
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC----CCcceeeecCceeeeecC--CCCChHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPV--GKEGITPLAKNIV 421 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~--~d~~~~~la~~i~ 421 (470)
+..++++.||++|. ++.+.+++|||++|+|+|+... .+..+.+.+.+.|.++++ .+.++++|++++.
T Consensus 279 -~~~~ll~~ad~~v~------~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 351 (391)
T 3tsa_A 279 -PLNLFLRTCELVIC------AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIA 351 (391)
T ss_dssp -CGGGTGGGCSEEEE------CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHH
T ss_pred -CHHHHHhhCCEEEe------CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHH
Confidence 45678899999994 4446799999999999999543 445667778889999988 2223999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
++++|++.++++++.+++.. +..+++++++.++++..
T Consensus 352 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 352 TVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 99999999999988877765 45888888887776553
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=169.07 Aligned_cols=159 Identities=18% Similarity=0.112 Sum_probs=119.6
Q ss_pred CCCeEEEEEeecccC-CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~-Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.+.+++++|++... ++.+.+.++++.+.+ .+++++++|++.+ .+.++ +++++|.+.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLD-----ISPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSC-----CGGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcC-----hhhhc------cCCCcEEEEcc
Confidence 345778888998654 466666555555432 4688999988732 11111 45679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe----cCCCCcc--eeeecCceeeeecCCCCChHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG----TAAGGTT--EIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~----s~~~g~~--e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
. ++.++|+.||++|. .+.+.++.|||++|+|+|+ .+.++.. +.+.+.+.|+++++.+.+.+.++
T Consensus 291 ~-~~~~ll~~ad~~v~------~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~--- 360 (398)
T 3oti_A 291 T-PLHTLLRTCTAVVH------HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR--- 360 (398)
T ss_dssp C-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH---
T ss_pred C-CHHHHHhhCCEEEE------CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH---
Confidence 8 89999999999994 4446799999999999999 5556777 88888889999987643355555
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 421 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++++|++.++++++.+++.. +..+++.+++.++++.
T Consensus 361 -~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 -RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp -HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred -HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 88899999999988887755 5589999888887764
|
| >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=168.84 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=115.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.+.++++.|+....+ .+.+.+.++.+ . + .+.++++ +|++.. .+.++ .++++|++.|+
T Consensus 230 ~~~~v~v~~G~~~~~~-~~~~~~~~~~~----~----~-~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEH-PEFFRACAQAF----A----D-TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCC-HHHHHHHHHHH----T----T-SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcch-HHHHHHHHHHH----h----c-CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 4557788889886554 22222222222 1 1 2356655 454421 11121 24679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC-----CCcceeeecCceeeeecCCCCChHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 421 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-----~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 421 (470)
.++. ++|+.||++|..+- ..+++|||++|+|+|+... .+..+.+.+.+.|..++.++.+++++++++.
T Consensus 289 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~ 361 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVE 361 (402)
T ss_dssp CCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHH
Confidence 8777 99999999996653 4788999999999996544 3566677788899999876434999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 422 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 422 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
++++|++.++++++.+++.. +..+++++++.+++++.+
T Consensus 362 ~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 362 RLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 99999999999888777654 447888888888777654
|
| >3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=160.20 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=113.4
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEE-EeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
+.+.++++.|+.....+ +.+...++.+ . +.+ +++++ +|++.. .+.++ .++++|.+.|+
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al----~----~~~-~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAF----D----GQP-WHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHH----T----TSS-CEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHH----h----cCC-cEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 44577788888754432 2222222222 1 124 77776 554421 11221 35679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCC----CCcceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~----~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
..+. ++|+.||++|..+- ..+++|||++|+|+|+... ....+.+.+.+.|..++.++.++++++++|.+
T Consensus 305 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 377 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHGG------MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGA 377 (415)
T ss_dssp CCHH-HHHHHEEEEEESCC------HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCc------HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHH
Confidence 8766 99999999996552 4689999999999999543 33566666777888888764348999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 460 (470)
+++|++.++++.+.+++.. +..+.+.+++.+++++.+
T Consensus 378 ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 378 VAADPALLARVEAMRGHVR-RAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHTCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhc
Confidence 9999999999888777654 447888888877776643
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-16 Score=150.22 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=115.1
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCc
Q 012132 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (470)
Q Consensus 268 ~~~~~i~~vGrl~~~-------Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (470)
+...+++++|++... +.++.+++++.+ .++++++++++ +..+.++. ++++
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~-----~~~~~l~~------~~~~ 265 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPD-----TVAEALRA------EVPQ 265 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCH-----HHHHHHHH------HCTT
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCC-----CCHHhhCC------CCCc
Confidence 345788889998765 567777777653 35788887654 23333332 3568
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHH
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPL 416 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~l 416 (470)
|.+ |+. +..++|+.+|++|..+ .+++++|||++|+|+|+.+..+ ..+.+.+.+.|+.++..+.+.+++
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l 337 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAI 337 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHH
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHH
Confidence 999 987 4688999999999654 3579999999999999998643 556666677899988664348999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 417 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 417 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
+++|.++++|++.++++++.+++.... -..+++++.++++
T Consensus 338 ~~~i~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 377 (384)
T 2p6p_A 338 ADSCQELQAKDTYARRAQDLSREISGM-PLPATVVTALEQL 377 (384)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 999999999999888888777665432 3555555554444
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=142.26 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=132.3
Q ss_pred HHHcCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEE--EEeCCCCcChHHHHHHHHHHHhcC
Q 012132 261 RESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV--IIGSDMNAQTKFESELRNYVMQKK 336 (470)
Q Consensus 261 r~~~~~~~~--~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~--ivG~g~~~~~~~~~~l~~~~~~~~ 336 (470)
|..++++.+ .++++.+++ ..|..+.+++++.++.+ +.|+..++ ++|.+.. ....+.+.+.+.|
T Consensus 430 r~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~-------~vP~s~L~l~~~g~~~g----~~~~~~~~~~~~G 496 (631)
T 3q3e_A 430 KVDYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRD-------RAKVKVHFHFALGQSNG----ITHPYVERFIKSY 496 (631)
T ss_dssp SCCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHH-------HCSSEEEEEEEESSCCG----GGHHHHHHHHHHH
T ss_pred cccccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHH-------hCCCcEEEEEecCCCch----hhHHHHHHHHHcC
Confidence 345677765 577777776 57999999999999877 45777664 3564311 2233333455678
Q ss_pred CCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeee------cCceeeeecC
Q 012132 337 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV------NGTTGLLHPV 408 (470)
Q Consensus 337 l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~------~~~~G~l~~~ 408 (470)
+.++|.|.|.. .+....|+.+|+++.|+. + +.|++.+|||+||+|||+...++...-+. -|-.++++..
T Consensus 497 I~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y-~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~ 573 (631)
T 3q3e_A 497 LGDSATAHPHSPYHQYLRILHNCDMMVNPFP--F-GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN 573 (631)
T ss_dssp HGGGEEEECCCCHHHHHHHHHTCSEEECCSS--S-CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES
T ss_pred CCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--c-cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC
Confidence 88899999985 566788999999999986 4 55999999999999999976554443321 1333432322
Q ss_pred CCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHh
Q 012132 409 GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 409 ~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~ 464 (470)
+ .+++++...++.+|++.+++++++.++......-++...+++++.|++++.+
T Consensus 574 -d--~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 574 -T--VDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNA 626 (631)
T ss_dssp -S--HHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHH
Confidence 3 8999999999999999999999998887655333335666777777776654
|
| >4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-16 Score=146.97 Aligned_cols=332 Identities=11% Similarity=0.068 Sum_probs=191.7
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhh-hhhccee--eEec----------
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-MWDRGVQ--VISA---------- 139 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~---------- 139 (470)
.+.|+++++..-+- -.-+.-+.++|++. +++.++...... .+.+.+. +...++. .+..
T Consensus 8 ~~~~~~~v~GtRpe---~~k~~p~~~~l~~~-~~~~~~~tgqh~-----~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 78 (385)
T 4hwg_A 8 HMLKVMTIVGTRPE---LIKLCCVISEFDKH-TKHILVHTGQNY-----AYELNQVFFDDMGIRKPDYFLEVAADNTAKS 78 (385)
T ss_dssp CCCEEEEEECSHHH---HHHHHHHHHHHHHH-SEEEEEECSCHH-----HHHHTHHHHC-CCCCCCSEECCCCCCCSHHH
T ss_pred hhhheeEEEEcCHh---HHHHHHHHHHHHhc-CCEEEEEeCCCC-----ChhHHHHHHhhCCCCCCceecCCCCCCHHHH
Confidence 35688888732110 13567778888876 887776643221 1112221 1222221 0100
Q ss_pred -----CChhhHHhhcCCcEEEEcccchhhhHH-HHhhhcCCccccceeeEEeeeccc--cchh-hhhcccc-cccceeee
Q 012132 140 -----KGQETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGH--YFKL-DYVKHLP-LVAGAMID 209 (470)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~~--~~~~-~~~~~~~-~~~~~~~~ 209 (470)
.....+.+..+||+|+++......+.. .+...+ +|++....+.... .+.. ..+.... ..+.+++.
T Consensus 79 ~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~-----IPv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~ 153 (385)
T 4hwg_A 79 IGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRK-----IPIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITL 153 (385)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTT-----CCEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhC-----CCEEEEeCCCccccccCcHHHHHHHHHhhhceeecC
Confidence 122455677999999998755433332 222222 3443322222110 0110 1111122 22334555
Q ss_pred ehhhHHHHHHhhhhhhccCCCceEEEecCC-chhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc---cCCCH
Q 012132 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS---RGKGQ 285 (470)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~---~~Kg~ 285 (470)
+....+.+. +.|++++++.++.|+. |...+... ...+.++++++|++++++++++.||.. ..|++
T Consensus 154 te~~~~~l~-----~~G~~~~~I~vtGnp~~D~~~~~~~------~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l 222 (385)
T 4hwg_A 154 TEHARRYLI-----AEGLPAELTFKSGSHMPEVLDRFMP------KILKSDILDKLSLTPKQYFLISSHREENVDVKNNL 222 (385)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCSHHHHHHHHHH------HHHHCCHHHHTTCCTTSEEEEEECCC-----CHHH
T ss_pred CHHHHHHHH-----HcCCCcCcEEEECCchHHHHHHhhh------hcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHH
Confidence 555544443 5588888999999864 32222111 112456888999987777777777753 34788
Q ss_pred HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc-C-C--CCcEEEeccc--CCHHHHHHhcCE
Q 012132 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-K-I--QDRVHFVNKT--LTVAPYLAAIDV 359 (470)
Q Consensus 286 ~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~-l--~~~V~~~g~~--~~~~~~~~~aDv 359 (470)
+.+++|+.++.+ ++ ++.+++... | .+++.++++ + + .++|.+.+.. .++..+|+.||+
T Consensus 223 ~~ll~al~~l~~-------~~-~~~vv~p~~------p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl 285 (385)
T 4hwg_A 223 KELLNSLQMLIK-------EY-NFLIIFSTH------P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC 285 (385)
T ss_dssp HHHHHHHHHHHH-------HH-CCEEEEEEC------H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHh-------cC-CeEEEEECC------h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE
Confidence 999999998754 22 566666543 2 134444444 3 2 3689987764 468999999999
Q ss_pred EEEccCCcccccchHHHHHHhcCCCEEecCCC-CcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHH
Q 012132 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 438 (470)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~ 438 (470)
++.+| |.+..||+++|+|+|+.+.. +.+|.+..| ++.++.. | .+++++++.++++|++.++.|++++.
T Consensus 286 vvt~S-------Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~~m~~~~~ 354 (385)
T 4hwg_A 286 ILSDS-------GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNKRTQGLVP 354 (385)
T ss_dssp EEECC-------TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTBCCSCCCH
T ss_pred EEECC-------ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHHHhhccCC
Confidence 99555 44679999999999998653 457777555 6677654 5 89999999999999877766655444
Q ss_pred HHHHHHc-ChhHHHHHHHHHHHHHH
Q 012132 439 ERVKEIF-QEHHMAERIAVVLKEVL 462 (470)
Q Consensus 439 ~~~~~~f-s~~~~~~~~~~~~~~~l 462 (470)
. | .-...++++.+++.+.+
T Consensus 355 ~-----~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 355 D-----YNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp H-----HHTCCCHHHHHHHHHHHHH
T ss_pred C-----CCCCChHHHHHHHHHHHHh
Confidence 3 3 33334444444444443
|
| >2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-15 Score=148.18 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=117.1
Q ss_pred CCeEEEEEeeccc-----CCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEE
Q 012132 269 EDLLFAIINSVSR-----GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343 (470)
Q Consensus 269 ~~~~i~~vGrl~~-----~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~ 343 (470)
...++++.|++.. .|.+..++++++. .++++++++++.. .+.++ +++++|.+
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~ 323 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQQ-----LEGVA------NIPDNVRT 323 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTTT-----TSSCS------SCCSSEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCcc-----hhhhc------cCCCCEEE
Confidence 3567888899865 4888888888853 3578888776521 11111 35679999
Q ss_pred ecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHH
Q 012132 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKN 419 (470)
Q Consensus 344 ~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~ 419 (470)
.|+..+ .++|..||++|.. +.+.++.|||++|+|+|+....+ ..+.+.+.+.|++++..+.++++|+++
T Consensus 324 ~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~ 396 (441)
T 2yjn_A 324 VGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRES 396 (441)
T ss_dssp CCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHH
T ss_pred ecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHH
Confidence 999865 7889999999943 34679999999999999998743 455666777899988764448999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Q 012132 420 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 459 (470)
Q Consensus 420 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 459 (470)
|.++++|++.++++++.+++.. +..+.+.+++.+++++.
T Consensus 397 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 397 VKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 9999999999998888777654 44777777777766653
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-13 Score=129.42 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=108.2
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEE-EEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
...++++.|+.. .+..+.+.+++..+. ..+++++ ++|.+.. .+.++ .++++|.+.++.
T Consensus 255 ~~~v~v~~Gs~~-~~~~~~~~~~~~al~---------~~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~~ 313 (424)
T 2iya_A 255 RPVLLIALGSAF-TDHLDFYRTCLSAVD---------GLDWHVVLSVGRFVD-----PADLG------EVPPNVEVHQWV 313 (424)
T ss_dssp CCEEEEECCSSS-CCCHHHHHHHHHHHT---------TCSSEEEEECCTTSC-----GGGGC------SCCTTEEEESSC
T ss_pred CCEEEEEcCCCC-cchHHHHHHHHHHHh---------cCCcEEEEEECCcCC-----hHHhc------cCCCCeEEecCC
Confidence 456777889876 334344433333331 1456774 5676521 11111 246789999998
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
.+. ++|+.+|++|..+ -.++++|||++|+|+|+....+ ..+.+.+.+.|+.++..+.+.++++++|.++
T Consensus 314 ~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l 386 (424)
T 2iya_A 314 PQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAV 386 (424)
T ss_dssp CHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHH
T ss_pred CHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHH
Confidence 776 8999999998433 3579999999999999997643 3444556678888876533489999999999
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
++|++.++++++.+++.. +....+++++.+++++
T Consensus 387 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 387 ASDPGVAERLAAVRQEIR-EAGGARAAADILEGIL 420 (424)
T ss_dssp HHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 999988888777665533 3345556665555543
|
| >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-13 Score=130.10 Aligned_cols=157 Identities=9% Similarity=0.002 Sum_probs=105.9
Q ss_pred CCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 268 NEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 268 ~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
..+.++++.|++. ..+.++.+++++.++ ++++++.++..... ..+..++|.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~------------~~~vv~~~g~~~~~------------~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ------------GRRVVLSSGWAGLG------------RIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT------------TCCEEEECTTTTCC------------CSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC------------CCEEEEEeCCcccc------------cccCCCCEEEecC
Confidence 3457777889887 566677777776543 46677765532110 1234679999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
.+ ...++..+|++|..+ -..++.|||++|+|+|+...++ ..+.+.+.+.|...+..+.+.+++.+++.+
T Consensus 276 ~~-~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 348 (404)
T 3h4t_A 276 VN-HQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALAT 348 (404)
T ss_dssp CC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CC-HHHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHH
Confidence 75 488999999999444 3478999999999999986554 233355556788877654458999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+++ ++.++++.+.+.+.. + -..+.+++.+++++
T Consensus 349 ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 349 ALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHH
Confidence 998 877766655544322 1 24444444444443
|
| >1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=130.79 Aligned_cols=249 Identities=13% Similarity=0.044 Sum_probs=163.9
Q ss_pred eeeeehhhHHHHHHh-hhhhhccCCCceEEEecCCchhhh----hHhhhH------------------------------
Q 012132 206 AMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAEDN------------------------------ 250 (470)
Q Consensus 206 ~~~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~~------------------------------ 250 (470)
+-.+|...++..+.. +...+..-+.++.-|-|||+...+ .|..+.
T Consensus 417 VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~ 496 (796)
T 1l5w_A 417 VNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFR 496 (796)
T ss_dssp EEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHH
T ss_pred cccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHH
Confidence 334455555554432 112233455679999999998777 232110
Q ss_pred ----HHHHHHHHH----HHHHcCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 012132 251 ----VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 319 (470)
Q Consensus 251 ----~~~~~~~~~----~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~ 319 (470)
..+...+.. +++++|++ ++.+.++++.|+..+||+++ ++..+.++.+...+......++++++.|.+.+
T Consensus 497 ~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P 576 (796)
T 1l5w_A 497 QQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAP 576 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCCh
Confidence 112222344 47777875 56799999999999999999 89998887654333211123589999999876
Q ss_pred cChHHHHHHHHHHHhc--------CCCC--cEEEec-ccCC-HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEe
Q 012132 320 AQTKFESELRNYVMQK--------KIQD--RVHFVN-KTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 387 (470)
Q Consensus 320 ~~~~~~~~l~~~~~~~--------~l~~--~V~~~g-~~~~-~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (470)
... ....+.+++.+. ..++ +|.|+. +... -..++++||++++||+...|++|+.-+-||..|.+.|+
T Consensus 577 ~y~-~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iG 655 (796)
T 1l5w_A 577 GYY-LAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVG 655 (796)
T ss_dssp TCH-HHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEE
T ss_pred hHH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeec
Confidence 543 233333333222 3556 788775 4444 45568999999999997789999999999999999999
Q ss_pred cCCCCcceeeec--CceeeeecCCCCChHHHHHH-------HHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Q 012132 388 TAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN-------IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 458 (470)
Q Consensus 388 s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~-------i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 458 (470)
+--|...|+.++ .+||++|.. + ++++.+. ..-.-.+++ ++++-+++. ...|||+.. .+|.++|
T Consensus 656 tLDGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~Ly 727 (796)
T 1l5w_A 656 TLDGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDKV-LDAVLKELE---SGKYSDGDK-HAFDQML 727 (796)
T ss_dssp CSCTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCHH-HHHHHHHHH---HTTTTTTCT-TTTHHHH
T ss_pred CcCCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCHH-HHHHHHHHH---cCCCCCCcH-HHHHHHH
Confidence 988888777544 469999987 4 6666532 222223553 444434333 367999875 7799999
Q ss_pred HHHHH
Q 012132 459 KEVLK 463 (470)
Q Consensus 459 ~~~l~ 463 (470)
+.++.
T Consensus 728 ~~L~~ 732 (796)
T 1l5w_A 728 HSIGK 732 (796)
T ss_dssp HHTST
T ss_pred HHHhc
Confidence 88754
|
| >2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=130.54 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=163.8
Q ss_pred eeeeehhhHHHHHHh-hhhhhccCCCceEEEecCCchhhh----hHhh----------------------------h---
Q 012132 206 AMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAE----------------------------D--- 249 (470)
Q Consensus 206 ~~~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~ngvd~~~~----~~~~----------------------------~--- 249 (470)
+-.+|...++..+.. +...+..-+.++.-|-|||+...+ .|.. +
T Consensus 406 VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~ 485 (796)
T 2c4m_A 406 INGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSV 485 (796)
T ss_dssp EEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHH
T ss_pred eeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHH
Confidence 444555555555532 122234456779999999987766 2221 1
Q ss_pred ----HHHHHHHHHH----HHHHcCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 250 ----NVAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 250 ----~~~~~~~~~~----~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
...+...+.+ +++++|++ ++.+.++++.|+..+||+++ ++..+.++.+...+.......+++++.|.+.
T Consensus 486 ~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~ 565 (796)
T 2c4m_A 486 LEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAA 565 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCC
Confidence 0122222344 47777764 56799999999999999999 8999887764332211111358999999987
Q ss_pred CcChHHHHHHHHHHHhc--------CCCC--cEEEec-ccCC-HHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 319 NAQTKFESELRNYVMQK--------KIQD--RVHFVN-KTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 319 ~~~~~~~~~l~~~~~~~--------~l~~--~V~~~g-~~~~-~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+... ....+.+++.+. ..++ +|.|+. +... -..++++||++++||+...|++|+.-+-+|..|.+.|
T Consensus 566 P~y~-~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i 644 (796)
T 2c4m_A 566 PGYV-RAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTL 644 (796)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEE
T ss_pred HhHH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEE
Confidence 6543 232333333222 3566 788775 4444 4556899999999999778999999999999999999
Q ss_pred ecCCCCcceeeec--CceeeeecCCCCChHHHHHH---HHHHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 387 GTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN---IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 387 ~s~~~g~~e~v~~--~~~G~l~~~~d~~~~~la~~---i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
++--|...|+.++ .+||++|....+++.++..+ ..-.-.+++ ++++-+++. ...|||+.- .+|.++|+.+
T Consensus 645 GtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 645 GTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDALD---NGTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp EESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTTT---SSSSCCTTC-CHHHHHHHHH
T ss_pred eccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHHH---cCCCCCCCH-HHHHHHHHHH
Confidence 9988877777543 46999998743336666543 222223443 333333322 256999876 7799999998
Q ss_pred HH
Q 012132 462 LK 463 (470)
Q Consensus 462 l~ 463 (470)
+.
T Consensus 720 ~~ 721 (796)
T 2c4m_A 720 IH 721 (796)
T ss_dssp HS
T ss_pred Hh
Confidence 74
|
| >4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=126.53 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=98.3
Q ss_pred CCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc
Q 012132 269 EDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg-~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (470)
...++++.|++...++ .+.+.+++..+.+ .+..+++.+.+.+.. ....+++++.+.++.
T Consensus 237 ~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~~ 296 (400)
T 4amg_A 237 RRRIAVTLGSIDALSGGIAKLAPLFSEVAD---------VDAEFVLTLGGGDLA-----------LLGELPANVRVVEWI 296 (400)
T ss_dssp CCEEEECCCSCC--CCSSSTTHHHHHHGGG---------SSSEEEEECCTTCCC-----------CCCCCCTTEEEECCC
T ss_pred CcEEEEeCCcccccCccHHHHHHHHHHhhc---------cCceEEEEecCcccc-----------ccccCCCCEEEEeec
Confidence 4466777788765443 3444444433311 456777666542211 112456899999987
Q ss_pred CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHHH
Q 012132 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 423 (470)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 423 (470)
...++|..+|+|| ..+..+++.|||++|+|+|+....+ ..+.+.+.+.|...+.. +..+++|.++
T Consensus 297 -p~~~lL~~~~~~v------~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~----~~~~~al~~l 365 (400)
T 4amg_A 297 -PLGALLETCDAII------HHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG----SLGAEQCRRL 365 (400)
T ss_dssp -CHHHHHTTCSEEE------ECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT----TCSHHHHHHH
T ss_pred -CHHHHhhhhhhee------ccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC----CchHHHHHHH
Confidence 4678899999998 3445679999999999999976543 34445555567776654 4567899999
Q ss_pred HhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Q 012132 424 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 456 (470)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 456 (470)
++|++.+++..+.+++ +...=+....++.+++
T Consensus 366 L~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 366 LDDAGLREAALRVRQE-MSEMPPPAETAAXLVA 397 (400)
T ss_dssp HHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 9999877766554444 3333455566655554
|
| >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-11 Score=117.99 Aligned_cols=157 Identities=8% Similarity=0.015 Sum_probs=108.9
Q ss_pred CCeEEEEEeec-ccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEecc
Q 012132 269 EDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (470)
Q Consensus 269 ~~~~i~~vGrl-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (470)
...++++.|++ .+.+..+.++++++++ +.+++++ |.+... ...++++|.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~~-------------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADLV-------------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTCC-------------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCccc-------------ccCCCCCEEEeCc
Confidence 35677888998 4777777888887653 2455554 655210 0234578999999
Q ss_pred cCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHHHH
Q 012132 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 422 (470)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 422 (470)
..+ .++|..+|++|..+ -.++++|||++|+|+|+....+ ..+.+.+.+.|+.++..+.+.++++++|.+
T Consensus 293 ~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALAT 365 (415)
T ss_dssp CCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHH
Confidence 865 57889999999543 2479999999999999987654 445566667888887654458999999999
Q ss_pred HHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Q 012132 423 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 463 (470)
Q Consensus 423 ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~ 463 (470)
+ +|++.++++.+.+++ +....-+++..+.+++++.
T Consensus 366 l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 366 A-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp H-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHT
T ss_pred H-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHh
Confidence 9 998877766554443 4445555666666666654
|
| >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=108.11 Aligned_cols=133 Identities=6% Similarity=0.040 Sum_probs=99.2
Q ss_pred CCCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEe
Q 012132 268 NEDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (470)
Q Consensus 268 ~~~~~i~~vGrl~---~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~ 344 (470)
+...+++++|++. +.|++..+++++.++ +.++++++++... -.++++|++.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~~~~~g~~~~--------------~~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQI------------PQKVLWRFDGNKP--------------DTLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTS------------SSEEEEECCSSCC--------------TTCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhC------------CCeEEEEECCcCc--------------ccCCCcEEEe
Confidence 3467888899985 566777777777532 3677777765311 0345789999
Q ss_pred cccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHH
Q 012132 345 NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAK 418 (470)
Q Consensus 345 g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~ 418 (470)
|+.++ ..++ +.||++|..+ .+.+++|||++|+|+|+....+ ..+.+.+.+.|++++..+.+.++|++
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHH
T ss_pred cCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHH
Confidence 99755 5666 8999999543 3689999999999999998642 45566677889999877444899999
Q ss_pred HHHHHHhCHHHHHHH
Q 012132 419 NIVKLATHVERRLTM 433 (470)
Q Consensus 419 ~i~~ll~~~~~~~~~ 433 (470)
+|.++++|++.++++
T Consensus 147 ~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 147 ALKRVINDPSYKENV 161 (170)
T ss_dssp HHHHHHHCHHHHHHH
T ss_pred HHHHHHcCHHHHHHH
Confidence 999999998754444
|
| >1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-10 Score=113.95 Aligned_cols=138 Identities=10% Similarity=0.041 Sum_probs=97.1
Q ss_pred CCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEE-eCCCCcChHHHHHHHHHHHhcCCCCcEEEe
Q 012132 269 EDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (470)
Q Consensus 269 ~~~~i~~vGrl~---~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~ 344 (470)
+..++++.|++. ..+.++.++++++.+ +.+++++ |.+.. + . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ------------GRRVILSRGWTEL------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT------------TCCEEEECTTTTC------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC------------CCeEEEEeCCccc------c-c------cCCCCCEEEe
Confidence 356777788874 355566666666532 3556665 65421 0 0 2356789999
Q ss_pred cccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCCChHHHHHHH
Q 012132 345 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNI 420 (470)
Q Consensus 345 g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~~~~~la~~i 420 (470)
++.. ..++|..||++|.. +-..++.|||++|+|+|+....+ ..+.+.+.+.|..++..+.+.++++++|
T Consensus 292 ~~~~-~~~ll~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 364 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIHH------GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAAL 364 (416)
T ss_dssp SSCC-HHHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHH
T ss_pred ccCC-hHHHhccCCEEEec------CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHH
Confidence 9975 67899999999943 33579999999999999986543 3444556678888876444489999999
Q ss_pred HHHHhCHHHHHHHHHHHHH
Q 012132 421 VKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 421 ~~ll~~~~~~~~~~~~a~~ 439 (470)
.++ +|++.++++++.+++
T Consensus 365 ~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 365 TTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp HHH-TSHHHHHHHHHHTTT
T ss_pred HHh-hCHHHHHHHHHHHHH
Confidence 999 998877776655443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-10 Score=115.83 Aligned_cols=184 Identities=13% Similarity=0.154 Sum_probs=140.6
Q ss_pred HHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCC-CC
Q 012132 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QD 339 (470)
Q Consensus 261 r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~ 339 (470)
|..+|++++.++++.+.++ .|=.+.+++++.++++ +.|+.+|++..... .....+++.+++.|+ .+
T Consensus 514 R~~~gLp~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~-------~vP~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~~ 580 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQL--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEPNIQQYAQNMGLPQN 580 (723)
T ss_dssp GGGGTCCTTSEEEECCSCG--GGCCHHHHHHHHHHHH-------HCSSEEEEEEETTG----GGHHHHHHHHHHTTCCGG
T ss_pred hhhcCCCCCCEEEEeCCcc--ccCCHHHHHHHHHHHH-------hCCCCeEEEEeCcH----HHHHHHHHHHHhcCCCcC
Confidence 6778999998888777654 5667889999998877 56999999988653 246778888999888 47
Q ss_pred cEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcce-----eeec-CceeeeecCCCC
Q 012132 340 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE-----IVVN-GTTGLLHPVGKE 411 (470)
Q Consensus 340 ~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e-----~v~~-~~~G~l~~~~d~ 411 (470)
+|.|.+.. .+-...|+.+|+++=|.- -+-+.+..||+.+|+|||+-....... ++.. |-.-+++. +
T Consensus 581 r~~f~~~~~~~~~l~~~~~~Di~LDt~p---~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~- 654 (723)
T 4gyw_A 581 RIIFSPVAPKEEHVRRGQLADVCLDTPL---CNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--N- 654 (723)
T ss_dssp GEEEEECCCHHHHHHHGGGCSEEECCSS---SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--S-
T ss_pred eEEECCCCCHHHHHHHhCCCeEEeCCCC---cCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--C-
Confidence 89999975 556677899999997764 456899999999999999864222111 1111 11122322 3
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--HcChhHHHHHHHHHHHHHHHh
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~l~~ 464 (470)
.++..+...++.+|++.+..+.+.-++.... .|+....++.+++.|+++.+.
T Consensus 655 -~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 655 -RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998888777655 589999999999999998764
|
| >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-11 Score=118.82 Aligned_cols=250 Identities=13% Similarity=0.086 Sum_probs=161.2
Q ss_pred ceeeeehhhHHHHHHh-hhhhhccCCCceEEEecCCchhhh----hHhhh----------------------------HH
Q 012132 205 GAMIDSHVTAEYWKNR-TRERLRIKMPDTYVVHLGNSKELM----EVAED----------------------------NV 251 (470)
Q Consensus 205 ~~~~~s~~~~~~~~~~-~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~----------------------------~~ 251 (470)
.+-.+|...++..+.. +...+...+.++.-|-|||+...+ .|.-+ ..
T Consensus 440 ~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~ 519 (824)
T 2gj4_A 440 AVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAF 519 (824)
T ss_dssp CEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHH
T ss_pred ceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHH
Confidence 3444555555555432 222234456789999999977665 22211 01
Q ss_pred ------HHHHHHHH----HHHHcCCC--CCCeEEEEEeecccCCCHHHH-HHHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 012132 252 ------AKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDLF-LHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (470)
Q Consensus 252 ------~~~~~~~~----~r~~~~~~--~~~~~i~~vGrl~~~Kg~~~l-l~a~~~l~~~l~~~~~~~~~~~l~ivG~g~ 318 (470)
.+...+.. ++++.|++ ++.+.++++.|+..+||++++ +..+.++.+...+......+.++++.|.+.
T Consensus 520 ~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~ 599 (824)
T 2gj4_A 520 IRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAA 599 (824)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCC
Confidence 11122233 56667765 567999999999999999998 888887754333211111257999999987
Q ss_pred CcChHHHHH----HHHHHHhc----CCCC--cEEEec-ccCCH-HHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEE
Q 012132 319 NAQTKFESE----LRNYVMQK----KIQD--RVHFVN-KTLTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (470)
Q Consensus 319 ~~~~~~~~~----l~~~~~~~----~l~~--~V~~~g-~~~~~-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (470)
+... .... +.++++.. .+++ +|.|+. +...+ ..++++||++++||+...|++|+.-+=||..|.+.|
T Consensus 600 P~y~-~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLti 678 (824)
T 2gj4_A 600 PGYH-MAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTI 678 (824)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEE
T ss_pred HhHH-HHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEE
Confidence 6543 2222 44444432 2345 688775 44444 556899999999999778999999999999999999
Q ss_pred ecCCCCcceeee--cCceeeeecCCCCChHHHHHHHH-------HHHhCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Q 012132 387 GTAAGGTTEIVV--NGTTGLLHPVGKEGITPLAKNIV-------KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 457 (470)
Q Consensus 387 ~s~~~g~~e~v~--~~~~G~l~~~~d~~~~~la~~i~-------~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 457 (470)
++--|...|+.+ ..+||++|... ++++ .++. .+.++.+.++++-++. +...|+|..- .+|.++
T Consensus 679 gtlDGanvEi~e~vG~~Ngf~FG~~---~~ev-~~l~~~~~~a~~~Y~~~~~l~~v~d~i---~~g~fs~~~~-~~y~~l 750 (824)
T 2gj4_A 679 GTMDGANVEMAEEAGEENFFIFGMR---VEDV-DRLDQRGYNAQEYYDRIPELRQIIEQL---SSGFFSPKQP-DLFKDI 750 (824)
T ss_dssp ECSCTTHHHHHHHHCGGGSEECSCC---HHHH-HHHHHHCCCHHHHHHHCHHHHHHHHHH---HHTTTCTTST-TTTHHH
T ss_pred EEecCccchhhhccCCCCEEEeCCc---HHHH-HHHHHcCCCHHHHhcCCHHHHHHHHHH---HhCCCCCCCh-HHHHHH
Confidence 998787777653 45789999865 4555 3331 2233222233333333 3466999887 779999
Q ss_pred HHHHHH
Q 012132 458 LKEVLK 463 (470)
Q Consensus 458 ~~~~l~ 463 (470)
|++++.
T Consensus 751 y~~l~~ 756 (824)
T 2gj4_A 751 VNMLMH 756 (824)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999874
|
| >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.5e-07 Score=79.96 Aligned_cols=241 Identities=10% Similarity=0.016 Sum_probs=127.4
Q ss_pred cEEEEEeeccCC-Cch-hHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--Ch---hhHHh
Q 012132 75 KLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ---ETINT 147 (470)
Q Consensus 75 ~kIl~v~~~~~~-~G~-~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~ 147 (470)
|||+|.+...+- |.| -.+...||++|+ +|.+++...+.. .....|+.+.... .. ....+
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~----------~~~~~g~~v~~l~~~d~~~~~~~l~ 66 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGS----------LIDEIPYPVYELSSESIYELINLIK 66 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTC----------CGGGCCSCEEECSSSCHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHh----------HHHHCCCeEEEcCccCHHHHHHHHH
Confidence 689999987665 434 366777788877 788888543321 1112366665543 22 23445
Q ss_pred hcCCcEEEEcccch-hhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeeehhhHHHHHHhhhhhhc
Q 012132 148 ALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (470)
Q Consensus 148 ~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (470)
..++|+|++-+... ..|...+..... .++ ..+-+.. . .. ..+-++........ . .|.
T Consensus 67 ~~~~d~lIvD~Y~~~~~~~~~lk~~~~----~~i-~~iDD~~-~-------~~--~~Dllin~~~~~~~---~----~Y~ 124 (282)
T 3hbm_A 67 EEKFELLIIDHYGISVDDEKLIKLETG----VKI-LSFDDEI-K-------PH--HCDILLNVNAYAKA---S----DYE 124 (282)
T ss_dssp HHTCSEEEEECTTCCHHHHHHHHHHHC----CEE-EEECSSC-C-------CC--CCSEEEECSTTCCG---G----GGT
T ss_pred hCCCCEEEEECCCCCHHHHHHHHHhcC----cEE-EEEecCC-C-------cc--cCCEEEeCCcccch---h----hcc
Confidence 57999999866443 333333222111 122 2233321 1 00 12333332222110 0 221
Q ss_pred --cCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcc
Q 012132 227 --IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKL 304 (470)
Q Consensus 227 --~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~ 304 (470)
++.. ..+ .-|.+.....+.... .+++ .-...+.++++.|...+..-...+++++..
T Consensus 125 ~~~p~~-~~~-l~G~~Y~~lR~eF~~---------~~~~-~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~---------- 182 (282)
T 3hbm_A 125 GLVPFK-CEV-RCGFSYALIREEFYQ---------EAKE-NRKKKYDFFICMGGTDIKNLSLQIASELPK---------- 182 (282)
T ss_dssp TTCC-C-CEE-EESGGGCCCCHHHHH---------HTTC-CCCCCEEEEEECCSCCTTCHHHHHHHHSCT----------
T ss_pred ccCCCC-CeE-eeCCcccccCHHHHH---------hhhh-ccccCCeEEEEECCCchhhHHHHHHHHhhc----------
Confidence 1222 222 235433322211100 0001 111233566677765544323344444321
Q ss_pred cCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
..+ -.+|.|.+. +..+++++..++. .++.+.++.+++.++|+.||++|.+ .|.++.|++++|+|
T Consensus 183 -~~~-i~vv~G~~~----~~~~~l~~~~~~~---~~v~v~~~~~~m~~~m~~aDlvI~~-------gG~T~~E~~~~g~P 246 (282)
T 3hbm_A 183 -TKI-ISIATSSSN----PNLKKLQKFAKLH---NNIRLFIDHENIAKLMNESNKLIIS-------ASSLVNEALLLKAN 246 (282)
T ss_dssp -TSC-EEEEECTTC----TTHHHHHHHHHTC---SSEEEEESCSCHHHHHHTEEEEEEE-------SSHHHHHHHHTTCC
T ss_pred -CCC-EEEEECCCc----hHHHHHHHHHhhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CcHHHHHHHHcCCC
Confidence 123 446678774 3567777766643 3799999999999999999999963 26899999999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
.|.-.
T Consensus 247 ~i~ip 251 (282)
T 3hbm_A 247 FKAIC 251 (282)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99865
|
| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00064 Score=70.67 Aligned_cols=296 Identities=11% Similarity=0.091 Sum_probs=156.4
Q ss_pred ccEEEEEeeccC-CCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 74 SKLVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 74 ~~kIl~v~~~~~-~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+|+|.+.... .++.++++.+..... ..++++.+++..... .....++.++.......+......+
T Consensus 352 ~~~ivf~s~~g~~~~~n~~~i~~~l~~~-~~~~~~~w~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~l~~a~ 419 (729)
T 3l7i_A 352 PKTIVFESFGGKNYSDSPKYIYEYMQKY-YPNYRYIWSFKNPDK-----------NVVPGSAEKVKRNSAEYYQAYSEAS 419 (729)
T ss_dssp EEEEEEEBGGGTBSCHHHHHHHHHHHHH-CTTSEEEEEESSGGG-----------CCCCSSCEEEETTSHHHHHHHHHEE
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHh-CCCceEEEEEcCccc-----------ccCCCCcEEEEECCHHHHHHHhcCc
Confidence 445666665432 355556655443322 124788887743211 0012345555555554444445667
Q ss_pred EEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchh-----------------hhhcccccccceeeeehhhHH
Q 012132 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-----------------DYVKHLPLVAGAMIDSHVTAE 215 (470)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~~~~~ 215 (470)
+++.++.....+ .++....++.++|+....-+.. ...+.....+..++.+....+
T Consensus 420 ~~v~n~~~~~~~--------~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~~~ 491 (729)
T 3l7i_A 420 HWVSNARTPLYL--------NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYSTE 491 (729)
T ss_dssp EEEESSCCCTTS--------CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHHHH
T ss_pred EEEECCCCcccc--------ccCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHHHH
Confidence 777765443211 1112245777788752111110 111222345667777776665
Q ss_pred HHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccC----CC-----HH
Q 012132 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG----KG-----QD 286 (470)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~----Kg-----~~ 286 (470)
.+.+ .++++..+ ++..|.+-...-.... .....++.+++++++++++.+|+|+-..... +| ..
T Consensus 492 ~~~~----~f~~~~~~--i~~~G~PR~D~l~~~~--~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~~~~~ 563 (729)
T 3l7i_A 492 IFRS----AFWMDEER--ILEIGYPRNDVLVNRA--NDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYLFELK 563 (729)
T ss_dssp HHHH----HTCCCGGG--EEESCCGGGHHHHHST--TCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSCCCCT
T ss_pred HHHH----HhCCCcce--EEEcCCCchHHHhccc--chHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccccchh
Confidence 5543 66766544 5566665443222110 0122356789999999999999998655432 11 11
Q ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCC
Q 012132 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (470)
Q Consensus 287 ~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (470)
.-++.+.+ .++ ++..+++-.. |... +.....+..+.+.-.....++.++|..||++|
T Consensus 564 ~~~~~l~~---~l~------~~~~li~r~H------p~~~---~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lI----- 620 (729)
T 3l7i_A 564 IDLDNLYK---ELG------DDYVILLRMH------YLIS---NALDLSGYENFAIDVSNYNDVSELFLISDCLI----- 620 (729)
T ss_dssp TCHHHHHH---HHT------TTEEEEECCC------HHHH---TTCCCTTCTTTEEECTTCSCHHHHHHTCSEEE-----
T ss_pred hHHHHHHH---HcC------CCeEEEEecC------cchh---ccccccccCCcEEeCCCCcCHHHHHHHhCEEE-----
Confidence 22233332 221 4666666443 3321 11111233455655555579999999999999
Q ss_pred cccccchHHHHHHhcCCCEEecC--CCCcce----e---eecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 367 WGECFGRITIEAMAFQLPVLGTA--AGGTTE----I---VVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~s~--~~g~~e----~---v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+ ++-++.|++..++|||-.. .....+ + ..+...|-++. +.++|.++|.....+
T Consensus 621 -TD-ySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~----~~~eL~~~i~~~~~~ 683 (729)
T 3l7i_A 621 -TD-YSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYT----EPYGLAKELKNLDKV 683 (729)
T ss_dssp -ES-SCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEES----SHHHHHHHHTTHHHH
T ss_pred -ee-chHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeEC----CHHHHHHHHhhhhcc
Confidence 33 4568999999999999762 111110 0 11112233333 278999998877653
|
| >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.1e-05 Score=74.87 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=70.2
Q ss_pred CcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCCC
Q 012132 339 DRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKE 411 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~ 411 (470)
+++.+.++..+. ++|+ ++|+|| .-+-.++++||+++|+|+|+-...+ ....+.+. +.|..++.++.
T Consensus 325 ~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~ 397 (456)
T 2c1x_A 325 GYGMVVPWAPQA-EVLAHEAVGAFV------THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397 (456)
T ss_dssp TTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSC
T ss_pred CceEEecCCCHH-HHhcCCcCCEEE------ecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCc
Confidence 578888987664 6888 678888 4444689999999999999986543 23344455 67888765544
Q ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
+.+++.++|.++++|++ .+++.+++++..
T Consensus 398 ~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 398 TKSGLMSCFDQILSQEK-GKKLRENLRALR 426 (456)
T ss_dssp CHHHHHHHHHHHHHSHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCc-HHHHHHHHHHHH
Confidence 58999999999999875 456666666543
|
| >3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0024 Score=59.92 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=69.5
Q ss_pred HHHHHcCCCCC-CeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhc
Q 012132 259 HVRESLGVRNE-DLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (470)
Q Consensus 259 ~~r~~~~~~~~-~~~i~~vGrl~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (470)
.+.++.|++.+ +.+.+..|.-.+.|.. +.+.+.+..+.+ .+.++++.|+.. ..+..++..+..
T Consensus 174 ~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~~-----e~~~~~~i~~~~ 239 (349)
T 3tov_A 174 EFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGPM-----DLEMVQPVVEQM 239 (349)
T ss_dssp HHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCTT-----THHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCcc-----hHHHHHHHHHhc
Confidence 34456677654 4555666754556654 456666665543 256778887652 344455555554
Q ss_pred CCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecC
Q 012132 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 389 (470)
Q Consensus 336 ~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~ 389 (470)
+ ...+.+.|.. .++..+++.||++|.+-. |..-+ |.++|+|+|+--
T Consensus 240 ~-~~~~~l~g~~sl~e~~ali~~a~~~i~~Ds------G~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 240 E-TKPIVATGKFQLGPLAAAMNRCNLLITNDS------GPMHV-GISQGVPIVALY 287 (349)
T ss_dssp S-SCCEECTTCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHTTTCCEEEEC
T ss_pred c-cccEEeeCCCCHHHHHHHHHhCCEEEECCC------CHHHH-HHhcCCCEEEEE
Confidence 4 2345566653 689999999999996533 55555 999999999853
|
| >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00065 Score=66.91 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=68.8
Q ss_pred CCcEEEecccCCHHHHHHhcCE--EEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeee-cCceeeeecCCC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVGK 410 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~-~~~~G~l~~~~d 410 (470)
++++.+.++..+. ++|+.+++ || .-+-.++++||+++|+|+|+-...+ ....+. +-+.|..++ .+
T Consensus 352 ~~~~~v~~~~pq~-~~L~h~~~~~~v------th~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~ 423 (482)
T 2pq6_A 352 ADRGLIASWCPQD-KVLNHPSIGGFL------THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TN 423 (482)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SS
T ss_pred CCCEEEEeecCHH-HHhcCCCCCEEE------ecCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CC
Confidence 3689999998765 58877665 66 3344679999999999999987643 223232 456777776 33
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKRGYERVK 442 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 442 (470)
.+.+++.++|.++++|++ .+.+.+++++...
T Consensus 424 ~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~ 454 (482)
T 2pq6_A 424 VKREELAKLINEVIAGDK-GKKMKQKAMELKK 454 (482)
T ss_dssp CCHHHHHHHHHHHHTSHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 458999999999999886 3566666665443
|
| >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00069 Score=65.72 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=68.4
Q ss_pred CCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecC-ceeeeecCCCCC
Q 012132 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEG 412 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~~ 412 (470)
.+++.+.++..+ ..+++.+++-++=++ +--++++||+++|+|+|+-...+ ....+.+. +.|..++.++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~ 400 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT 400 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCC
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCC
Confidence 368888899866 588999995444443 23478999999999999986533 23334443 678887765555
Q ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 012132 413 ITPLAKNIVKLATHVERRLTMGKRGYER 440 (470)
Q Consensus 413 ~~~la~~i~~ll~~~~~~~~~~~~a~~~ 440 (470)
.+++.++|.+++++++ .+++.+++++.
T Consensus 401 ~~~l~~av~~ll~~~~-~~~~r~~a~~l 427 (454)
T 3hbf_A 401 KESIKKALELTMSSEK-GGIMRQKIVKL 427 (454)
T ss_dssp HHHHHHHHHHHHSSHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHH
Confidence 8999999999998853 34555555543
|
| >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0046 Score=60.44 Aligned_cols=86 Identities=21% Similarity=0.134 Sum_probs=60.7
Q ss_pred CcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----ccee-eecCceeeee-c---
Q 012132 339 DRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEI-VVNGTTGLLH-P--- 407 (470)
Q Consensus 339 ~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~-v~~~~~G~l~-~--- 407 (470)
+++.+.++..+. .+|+ ++|+|| .-+-.++++||+++|+|+|+-...+ .... ++.-+.|+.+ .
T Consensus 332 ~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~ 404 (463)
T 2acv_A 332 GKGMICGWAPQV-EVLAHKAIGGFV------SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYR 404 (463)
T ss_dssp CSEEEESSCCHH-HHHHSTTEEEEE------ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCC
T ss_pred CCEEEEccCCHH-HHhCCCccCeEE------ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccC
Confidence 478888887765 5776 678888 3444689999999999999987543 2333 3455678877 2
Q ss_pred CC--CCChHHHHHHHHHHHh-CHHHHH
Q 012132 408 VG--KEGITPLAKNIVKLAT-HVERRL 431 (470)
Q Consensus 408 ~~--d~~~~~la~~i~~ll~-~~~~~~ 431 (470)
.+ +.+.+++.++|.++++ +++.++
T Consensus 405 ~~~~~~~~~~l~~ai~~ll~~~~~~r~ 431 (463)
T 2acv_A 405 KGSDVVAAEEIEKGLKDLMDKDSIVHK 431 (463)
T ss_dssp TTCCCCCHHHHHHHHHHHTCTTCTHHH
T ss_pred CCCccccHHHHHHHHHHHHhccHHHHH
Confidence 23 2348999999999997 344443
|
| >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.036 Score=51.24 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred cCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHH-HHHHHHhcCCCCcEE
Q 012132 264 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE-LRNYVMQKKIQDRVH 342 (470)
Q Consensus 264 ~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~-l~~~~~~~~l~~~V~ 342 (470)
.+....+.+++..|.-.+.|.... +-+.++.+.+.+ .++++++.+++ +.+.+ .++..+.. +++.
T Consensus 173 ~~~~~~~~i~l~pga~~~~k~wp~--~~~~~l~~~L~~-----~~~~vvl~~g~-----~~e~~~~~~i~~~~---~~~~ 237 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTRDDKHWPE--EHWRELIGLLAD-----SGIRIKLPWGA-----PHEEERAKRLAEGF---AYVE 237 (326)
T ss_dssp CCTTTTSEEEEECCCSSGGGSCCH--HHHHHHHHHTTT-----TCCEEEECCSS-----HHHHHHHHHHHTTC---TTEE
T ss_pred ccccCCCEEEEEeCCCCccccCCH--HHHHHHHHHHHH-----CCCcEEEecCC-----HHHHHHHHHHHhhC---Cccc
Confidence 344445667777776556676552 333333333332 46788887434 33333 34443332 2466
Q ss_pred Eeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 343 ~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+.|.. .++..+++.||++|.+-. |..=+ |.|+|+|+|+-
T Consensus 238 l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 238 VLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITV 278 (326)
T ss_dssp ECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred ccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEE
Confidence 67753 788999999999996633 55555 77799999975
|
| >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=62.26 Aligned_cols=111 Identities=12% Similarity=0.117 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCC-CCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH
Q 012132 257 REHVRESLGVRN-EDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (470)
Q Consensus 257 ~~~~r~~~~~~~-~~~~i~~vGr-l~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (470)
++.+++.+|++. .+++++..|. ..+.|... .+.+++..+.+ .+++++++|+.. ..+..+++.
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~~-----e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSAK-----DHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCGG-----GHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeChh-----hHHHHHHHH
Confidence 345677788763 4566667776 44667655 66666666543 367888888652 233334443
Q ss_pred HhcC--C-CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 333 MQKK--I-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 333 ~~~~--l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+..+ . .+.+.+.|.. .++..+++.||++|.+.. |..-+ |.|+|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEE
Confidence 3222 0 1234566753 788999999999997754 43333 99999999974
|
| >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0075 Score=59.16 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=56.3
Q ss_pred EEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC---CCC
Q 012132 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG---KEG 412 (470)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~---d~~ 412 (470)
+...++..+. ++|+.+++-++=++ +--++++||+++|+|+|+-...+ ....+ +.-+.|...+.. ..+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4555677665 89999995333333 33478999999999999987543 23333 455677776543 334
Q ss_pred hHHHHHHHHHHHhC
Q 012132 413 ITPLAKNIVKLATH 426 (470)
Q Consensus 413 ~~~la~~i~~ll~~ 426 (470)
.++++++|.+++.+
T Consensus 416 ~~~l~~av~~vl~~ 429 (480)
T 2vch_A 416 REEVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999983
|
| >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00028 Score=61.10 Aligned_cols=73 Identities=7% Similarity=-0.030 Sum_probs=53.1
Q ss_pred cEEEecccCCHHHHHH-hcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCc--------ceeeecCceeeeecCCC
Q 012132 340 RVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGK 410 (470)
Q Consensus 340 ~V~~~g~~~~~~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~--------~e~v~~~~~G~l~~~~d 410 (470)
++...++.+++..+|+ .||++| .-+-..+++|++++|+|.|.-..+.. .+.+.+.+.++++ +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvI------shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVI------SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEE------ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEE------ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 5667788899999999 999999 44446899999999999998765421 2223333345554 3
Q ss_pred CChHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKL 423 (470)
Q Consensus 411 ~~~~~la~~i~~l 423 (470)
++.|.++|.++
T Consensus 186 --~~~L~~~i~~l 196 (224)
T 2jzc_A 186 --PTETGLIAGLR 196 (224)
T ss_dssp --SCTTTHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 66787888776
|
| >1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=1.4 Score=36.50 Aligned_cols=333 Identities=14% Similarity=0.073 Sum_probs=170.5
Q ss_pred cEEEEEeec-cCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhh-HHhhcCCc
Q 012132 75 KLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET-INTALKAD 152 (470)
Q Consensus 75 ~kIl~v~~~-~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D 152 (470)
|+|+++... +...|...+..+.-..+.+.||+|+++........... ...-....++++-.+...+ +......|
T Consensus 2 mricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrts----shdhksfsipvilakeydkalklvndcd 77 (401)
T 1xv5_A 2 MRICIFMARGLEGCGVTKFSLEQRDWFIKNGHEVTLVYAKDKSFTRTS----SHDHKSFSIPVILAKEYDKALKLVNDCD 77 (401)
T ss_dssp CEEEEEETTCCCSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTTT----SSSCTTTCEEECTTTCHHHHHHHHTSCS
T ss_pred ceEEEEeeccccccCceeeehhhhhhhhcCCcEEEEEEeccccccccc----cccCccccceeEehhhhHHHhhhhccCc
Confidence 688877654 34466678888888999999999999885543321100 0111234456655555443 33457899
Q ss_pred EEEEcccchhhhHHH-------HhhhcCCccccceeeEEeeeccccchhh--hhcccccccceeeeehh---hHHHHHHh
Q 012132 153 LIVLNTAVAGKWLDA-------VLKEDVPRVLPNVLWWIHEMRGHYFKLD--YVKHLPLVAGAMIDSHV---TAEYWKNR 220 (470)
Q Consensus 153 iV~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~~~~~~~~~~~~s~~---~~~~~~~~ 220 (470)
+.+.++..+...... ++-...|. ..++..-|+..-..+.++ ........+.+...|.. ..-.+.++
T Consensus 78 iliinsvpatsvqeatinnykklldnikps--irvvvyqhdhsvlslrrnlgleetvrradvifshsdngdfnkvlmkew 155 (401)
T 1xv5_A 78 ILIINSVPATSVQEATINNYKKLLDNIKPS--IRVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDNGDFNKVLMKEW 155 (401)
T ss_dssp EEEEEECCBTTSCHHHHHHHHHHHHHSCTT--SEEEEEECCCSHHHHTTBSSHHHHHHHCSEEEESCTTSHHHHTHHHHH
T ss_pred EEEEccCccchhHHHHHhhHHHHHhcCCCc--eEEEEEeccchhhhhhhhcChHHhhhhhceEEecCCCCcHHHHHHHhh
Confidence 999887543322111 11122222 345666665432222221 11222344444443332 11122222
Q ss_pred hhhhhcc--CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCC---CCeEEEEEeecccCCCHHHHHHHHHHH
Q 012132 221 TRERLRI--KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFLHSFYES 295 (470)
Q Consensus 221 ~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~i~~vGrl~~~Kg~~~ll~a~~~l 295 (470)
..+...+ +.+..-.++|--++-.. -.+|..+=-+- +--+=-++||-..+||.-.+.+.-.+.
T Consensus 156 ypetvslfddieeaptvynfqppmdi-------------vkvrstywkdvseinmninrwigrtttwkgfyqmfdfhekf 222 (401)
T 1xv5_A 156 YPETVSLFDDIEEAPTVYNFQPPMDI-------------VKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKF 222 (401)
T ss_dssp SCSSCCSSSCCCCCCCEEECCCCBCH-------------HHHHHHHCCCGGGCEEEEEEEECCSCGGGCHHHHHHHHHHT
T ss_pred ccchhhhhcchhhCCceeccCCCcee-------------eeeehhhhccHHHhhcchhhhhcccchhHhHHHHhhHHHHh
Confidence 1111110 11112223332111111 11222221111 112335789999999998888776665
Q ss_pred HHHHHhhcccCCce-EEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecc--------------------c-CCHHHH
Q 012132 296 LELIKEKKLEVPSV-HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------------T-LTVAPY 353 (470)
Q Consensus 296 ~~~l~~~~~~~~~~-~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--------------------~-~~~~~~ 353 (470)
.+ |.- .-++-|-. .. |-.- .+++.|++ ..+.|. . +++.+-
T Consensus 223 lk---------pagkstvmegle--rs-pafi----aikekgip--yeyygnreidkmnlapnqpaqildcyinsemler 284 (401)
T 1xv5_A 223 LK---------PAGKSTVMEGLE--RS-PAFI----AIKEKGIP--YEYYGNREIDKMNLAPNQPAQILDCYINSEMLER 284 (401)
T ss_dssp TT---------TTTCEEEEECCC--CS-HHHH----HHHHTTCC--EEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHH
T ss_pred cC---------ccchhhhhhhhh--cC-CceE----EEcccCCc--hhhcCcchhhhhcCCCCCcchhhhheecHHHHHH
Confidence 43 332 33444432 22 2221 23444553 444442 1 445566
Q ss_pred HHhcCEEEEccCC----cccccchHHHHHHhcCCCEEecC-CC--------CcceeeecCcee-eeecCCCCChHHHHHH
Q 012132 354 LAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLGTA-AG--------GTTEIVVNGTTG-LLHPVGKEGITPLAKN 419 (470)
Q Consensus 354 ~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~s~-~~--------g~~e~v~~~~~G-~l~~~~d~~~~~la~~ 419 (470)
+..+.....-|.- -....-.+-+|--|||+..+--. .| ..+- ..+ +.| +.++.+| .++--+.
T Consensus 285 msksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpl-tsh-dsgiiwfdend--mestfer 360 (401)
T 1xv5_A 285 MSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPL-TSH-DSGIIWFDEND--MESTFER 360 (401)
T ss_dssp HHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBG-GGS-CCSCEEECTTC--HHHHHHH
T ss_pred hhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCcc-ccc-CCceEEecCCc--hHHHHHH
Confidence 6666665554431 02244577889999997655322 12 1111 112 234 4567777 9999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHcChh
Q 012132 420 IVKLATHVERRLTMGKRGYERVKEIFQEH 448 (470)
Q Consensus 420 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 448 (470)
|.++-+|..+..+-.+.|+++.-++-+-.
T Consensus 361 ikelssdralydrerekayeflyqhqdss 389 (401)
T 1xv5_A 361 IKELSSDRALYDREREKAYEFLYQHQDSS 389 (401)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHBHH
T ss_pred HHHhccchhhhhHHHHHHHHHHHhccccc
Confidence 99999999999988899988776644433
|
| >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A | Back alignment and structure |
|---|
Probab=91.46 E-value=0.54 Score=43.15 Aligned_cols=80 Identities=21% Similarity=0.156 Sum_probs=47.1
Q ss_pred ccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCCh-------
Q 012132 70 SFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------- 142 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 142 (470)
.+|++|||+|+. +..+...+.++|.+.||+|..+...++.... ...+.......|++++.....
T Consensus 18 ~~~~~mrIvf~G-------~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~~~~ 88 (329)
T 2bw0_A 18 LYFQSMKIAVIG-------QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQAL 88 (329)
T ss_dssp ---CCCEEEEEC-------CHHHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEEC
T ss_pred ccCCCCEEEEEc-------CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCccccccccc
Confidence 346679999993 3456666778888889998655543222111 011234455677877654322
Q ss_pred ---hhHHhhcCCcEEEEcc
Q 012132 143 ---ETINTALKADLIVLNT 158 (470)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (470)
....+..+||++++-.
T Consensus 89 ~~~~~~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 89 PDVVAKYQALGAELNVLPF 107 (329)
T ss_dssp HHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 2334568999999864
|
| >3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.96 Score=41.20 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=47.6
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH----HHhhhhhhhhcceeeEecCCh----
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKGQ---- 142 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---- 142 (470)
+|++|||+|+.+. .+.....++|.+.||+|..+...++.+.... ...+.......|++++.....
T Consensus 4 m~~~mrivf~Gt~-------~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 76 (318)
T 3q0i_A 4 MSQSLRIVFAGTP-------DFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDE 76 (318)
T ss_dssp ---CCEEEEECCS-------HHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHH
T ss_pred cccCCEEEEEecC-------HHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHH
Confidence 3567999999753 3555667778888999876665433221110 112344556678887654332
Q ss_pred -hhHHhhcCCcEEEEcc
Q 012132 143 -ETINTALKADLIVLNT 158 (470)
Q Consensus 143 -~~~~~~~~~DiV~~~~ 158 (470)
....+..+||++++-.
T Consensus 77 ~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 77 SKQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHHTTCCSEEEESS
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 2445678999999864
|
| >3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.96 E-value=1.4 Score=40.04 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.3
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchh----HHHhhhhhhhhcceeeEecCCh-----h
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ-----E 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~ 143 (470)
|+|||+|+.+.- +.....++|.+.||+|..+...++.+... ....+.....+.|++++..... .
T Consensus 1 ~~mrivf~Gtp~-------fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFAGTPQ-------FAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEEECSG-------GGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEECCCH-------HHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 468999998642 34455677777899987666543332111 1112344556678887654332 2
Q ss_pred hHHhhcCCcEEEEcc
Q 012132 144 TINTALKADLIVLNT 158 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (470)
...+..+||++++-.
T Consensus 74 ~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 74 EKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHTTCCSEEEEES
T ss_pred HHHHhcCCCEEEEcC
Confidence 445678999999864
|
| >4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=87.72 E-value=0.77 Score=40.96 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=30.7
Q ss_pred ccccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEec
Q 012132 70 SFMKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITI 112 (470)
Q Consensus 70 ~~~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~ 112 (470)
..|+.||||+|...-.+.+- .......++.|.+.||+|.++-.
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 45788999999876545443 45667788999999999999874
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=87.32 E-value=4.5 Score=31.29 Aligned_cols=112 Identities=12% Similarity=0.166 Sum_probs=73.1
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....++...++.|....|.......+....+.. .|++++-..- .+.-|+.+++.+..
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSST
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhccc
Confidence 356788888752 4667788888887754335555544444444433 5887775441 44456778877764
Q ss_pred --CCCEEecCCCC----cceeeecCceeeeecCC-CCChHHHHHHHHHHHh
Q 012132 382 --QLPVLGTAAGG----TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 --G~PvI~s~~~g----~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~ 425 (470)
++|+|+..... ..+.+..|..+++..|. + .++|.++|..+++
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 67887643222 23345567889999998 8 9999999998875
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=87.09 E-value=4.4 Score=30.87 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=71.6
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh---------cCEEEEccCCcccccchHHHHHH
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---------IDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~---------aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
.+++|+.+.. .....+++..++.|....|.......+....+.. .|++++-..- .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 4677777652 4677788888877754356666655555566553 6888875441 334466677666
Q ss_pred h-----cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 380 A-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 380 a-----~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
. .++|+|... ... ..+....|..+++..|-+ .++|.++|..++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 4 457777543 222 233444577899999988 9999999988864
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=84.43 E-value=5.5 Score=31.14 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=72.1
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH-----------hcCEEEEccCCcccccchHHH
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-----------AIDVLVQNSQAWGECFGRITI 376 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~-----------~aDv~v~pS~~~~E~~g~~~l 376 (470)
..+++|+.+.. .....+++..++.|....|.......+..+.+. ..|++++-..- .+.-|+.++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 35778887752 467788888888876545666655555555553 35777765431 444567777
Q ss_pred HHHhc-----CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHH
Q 012132 377 EAMAF-----QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 424 (470)
Q Consensus 377 EAma~-----G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 424 (470)
+.+.. ++|+|... ... ..+....|..+++..|-+ .++|.++|.++.
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 77654 57777543 222 233445677899999988 999999998874
|
| >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.26 E-value=4.8 Score=34.25 Aligned_cols=73 Identities=10% Similarity=0.037 Sum_probs=45.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCc--eEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-----------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------- 141 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 141 (470)
|||+++.+ |....+..+.++|.+.++ +|..+..+.+... ........|++++....
T Consensus 2 ~rI~vl~S-----G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~~ 70 (216)
T 2ywr_A 2 LKIGVLVS-----GRGSNLQAIIDAIESGKVNASIELVISDNPKAY------AIERCKKHNVECKVIQRKEFPSKKEFEE 70 (216)
T ss_dssp EEEEEEEC-----SCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCH------HHHHHHHHTCCEEECCGGGSSSHHHHHH
T ss_pred CEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChH------HHHHHHHcCCCEEEeCcccccchhhhhH
Confidence 68988864 334678888899988887 6654444332211 23445667888764221
Q ss_pred -hhhHHhhcCCcEEEEcc
Q 012132 142 -QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (470)
.....+..++|+|++-.
T Consensus 71 ~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 71 RMALELKKKGVELVVLAG 88 (216)
T ss_dssp HHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 12334568999999865
|
| >3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} | Back alignment and structure |
|---|
Probab=84.10 E-value=5.5 Score=34.19 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=46.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
+|||+|+.+ |....+..+.++|.+. +++|..+....+... ........|++++....
T Consensus 22 ~~rI~~l~S-----G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~------~~~~A~~~gIp~~~~~~~~~~~r~~~~ 90 (229)
T 3auf_A 22 MIRIGVLIS-----GSGTNLQAILDGCREGRIPGRVAVVISDRADAY------GLERARRAGVDALHMDPAAYPSRTAFD 90 (229)
T ss_dssp CEEEEEEES-----SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCH------HHHHHHHTTCEEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchH------HHHHHHHcCCCEEEECcccccchhhcc
Confidence 479999874 3345678888888876 678765554433211 23455677888864321
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 91 ~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHHHHhcCCCEEEEcC
Confidence 12334568999999865
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=84.05 E-value=3 Score=35.83 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=26.0
Q ss_pred cccccccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 69 ~~~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
...++.|+|++.. |....-..+++.|.++||+|.+++..
T Consensus 16 ~~~l~~~~ilVtG------atG~iG~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 16 NLYFQGMRVLVVG------ANGKVARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp -----CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccCcCCCeEEEEC------CCChHHHHHHHHHHhCCCeEEEEECC
Confidence 3445678887764 33456677888999999999998854
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
Probab=83.52 E-value=4.4 Score=31.42 Aligned_cols=111 Identities=7% Similarity=0.119 Sum_probs=70.6
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....++...+..|. .|.......+....+. ..|++++-... .+.-|+.+++.+..
T Consensus 7 ~~~~iLivd~~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQL----PALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTG----GGGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 457888888753 356667777776654 3554444344444443 36888875441 34456777877764
Q ss_pred --CCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 --QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 --G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
++|||.. .... ..+.+..|..+++..|-+ .++|..+|..++..
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLKL 128 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHHH
Confidence 6787754 3222 233345678899999988 99999999988763
|
| >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* | Back alignment and structure |
|---|
Probab=83.24 E-value=1.5 Score=36.70 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=30.7
Q ss_pred ccccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecC
Q 012132 72 MKSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 72 ~~~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|+||||+++..+ +.|. ...+..+++.+.+.|++|.++...
T Consensus 3 M~M~kilii~~S--~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 3 MSSPYILVLYYS--RHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp --CCEEEEEECC--SSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred CCcceEEEEEeC--CCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 556799999865 3554 788889999999999999988743
|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=83.10 E-value=7.5 Score=29.85 Aligned_cols=114 Identities=8% Similarity=-0.053 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh-------cCEEEEccCCcccccchHHHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAM 379 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~-------aDv~v~pS~~~~E~~g~~~lEAm 379 (470)
...+++|+.+.. .....++...+..+....|.......+....+.. .|++++-..- .+.-|+.+++.+
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDD----IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCH----HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSCHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCCHHHHHHHH
Confidence 346778887752 3566777777776643245544444555555554 6888875441 444567777665
Q ss_pred hc-------CCCEEecCCCC----cceeeecC-ceeeeecCCCCChHHHHHHHHHHHhCH
Q 012132 380 AF-------QLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 427 (470)
Q Consensus 380 a~-------G~PvI~s~~~g----~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~ 427 (470)
.. .+|+|...... ..+....| ..+++..|-+ .++|.++|.+.....
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLT--ANALNNLYNKVLNEG 140 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCC--HHHHHHHHHHHHCC-
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCC--HHHHHHHHHHHHHhc
Confidence 44 56776543222 22333445 6789999988 999999999988754
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} | Back alignment and structure |
|---|
Probab=83.03 E-value=10 Score=28.99 Aligned_cols=110 Identities=9% Similarity=0.006 Sum_probs=69.8
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc---
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
...+++|+.+.. .....++...+..|. .|......++....+.. .|++++-... .+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDA----HVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 456788887752 466777777777764 35544444455555543 5777765431 33456677777654
Q ss_pred --CCCEEec-CCC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 382 --QLPVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 382 --G~PvI~s-~~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+|||.. ... ...+.+..|..+++..|-+ .++|.++|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFD--NEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 4677653 222 2334455577789999888 9999999988874
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=82.66 E-value=6.8 Score=30.08 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEEccCCcccccchHHHHHHh---c
Q 012132 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA---F 381 (470)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~----~aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (470)
.+++|+.+.. .....++...++.|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 5677777652 466777888877663 3544444344445554 46888775441 3445666665554 3
Q ss_pred CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 382 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
.+|+|... ... ..+.+..|..+++..|.+ .++|..+|..++....
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRKK 125 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHHH
Confidence 67777543 222 234455678899999988 9999999999886433
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} | Back alignment and structure |
|---|
Probab=82.28 E-value=15 Score=28.07 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=69.8
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---hcCEEEEccCCccc-ccchHHHHHHh--c
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA--F 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---~aDv~v~pS~~~~E-~~g~~~lEAma--~ 381 (470)
..+++|+.+.. .....++...++.|. .|.......+....+. ..|++++-..- .+ .-|..+++.+. .
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSK----FQAKTIANILNKYGY--TVEIALTGEAAVEKVSGGWYPDLILMDIEL-GEGMDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCSEEEEESSC-SSSCCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEecChHHHHHHHhcCCCCCEEEEeccC-CCCCCHHHHHHHHHhCC
Confidence 45778887752 466777888887764 3544444344445553 35888875541 23 44666666554 4
Q ss_pred CCCEEecC-CC---CcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 QLPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 G~PvI~s~-~~---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... .. ...+....|..+++..|-+ .++|.++|..++..
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSAT--EQVLITIVEMALRL 124 (140)
T ss_dssp CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCC--HHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHHH
Confidence 78887542 22 2334455577899999988 99999999988753
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A | Back alignment and structure |
|---|
Probab=82.18 E-value=7 Score=29.77 Aligned_cols=107 Identities=10% Similarity=0.079 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHh--c-
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--F- 381 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma--~- 381 (470)
...+++|+.+.. .....++...+..|. .|.......+....+.. .|++++| +.-|+.+++.+. .
T Consensus 17 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~~-----~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVS-----DKNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHSCCSEEEEC-----STTHHHHHHHHHHHST
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHHcCCCCEEEEc-----CccHHHHHHHHHhcCC
Confidence 456777877652 356667777776654 45444443444444433 5888733 333556665554 3
Q ss_pred CCCEEecC-CCC---cceeeecCceeeeecCC-CCChHHHHHHHHHHHhC
Q 012132 382 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... ... ..+.+..|..+++..|- + .++|..+|..++..
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSC--HHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCC--HHHHHHHHHHHHhh
Confidence 77777543 222 23344567789999988 8 99999999988754
|
| >2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1 | Back alignment and structure |
|---|
Probab=82.15 E-value=2.4 Score=33.29 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=33.1
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~~ 113 (470)
.||++|+.+..|.|.- .+...+++.++.+.||+| .||-..
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 5799999987777544 588899999999999999 888744
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=82.06 E-value=12 Score=28.54 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=70.7
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh--cCEEEEccCCcccccchHHHHHHhc----
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (470)
..+++|+.+.. .....+++..++.|. .|.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 6 RPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRT 78 (140)
T ss_dssp CSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGG
T ss_pred CCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCccc
Confidence 45778887752 356777777777664 35444443444444433 5888775441 44456777777654
Q ss_pred -CCCEEecCCCC----cc-eeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 -QLPVLGTAAGG----TT-EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 -G~PvI~s~~~g----~~-e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|...... .. +....|..+++..|-+ .++|..+|..+++.
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 79 RDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAIDN 127 (140)
T ss_dssp TTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHHh
Confidence 67877643222 22 4555677889999988 99999999998763
|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=81.95 E-value=8.6 Score=29.59 Aligned_cols=111 Identities=8% Similarity=0.076 Sum_probs=72.3
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH------------hcCEEEEccCCcccccchHH
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA------------AIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~------------~aDv~v~pS~~~~E~~g~~~ 375 (470)
..+++|+.+.. .....+++..++.|....|.......+....+. ..|++++-..- .+.-|..+
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSD----EDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-PGTDGREV 80 (149)
T ss_dssp TSCEEEECCCH----HHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-SSSCHHHH
T ss_pred CccEEEEECCH----HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC-CCCCHHHH
Confidence 45677877752 467778888888775435666655555555554 35888865441 33456677
Q ss_pred HHHHh-----cCCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 376 IEAMA-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 376 lEAma-----~G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
++.+. ..+|+|... ... ..+....|..+++..|-+ .++|.++|..++.
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 137 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE--IDRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 77765 457777543 222 233444577899999888 9999999988764
|
| >2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A | Back alignment and structure |
|---|
Probab=81.84 E-value=2.4 Score=32.72 Aligned_cols=39 Identities=10% Similarity=-0.075 Sum_probs=31.4
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~~ 113 (470)
||++++.+..+.+.. .....+++..+.+.||+| .|+...
T Consensus 1 mk~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~ 41 (130)
T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYH 41 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEec
Confidence 588888877666443 578899999999999999 888744
|
| >4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=81.28 E-value=7.2 Score=32.88 Aligned_cols=77 Identities=21% Similarity=0.162 Sum_probs=47.7
Q ss_pred cccccEEEEEeeccCCCchhHHHHHHHHHHHhCC--ceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC-------
Q 012132 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------- 141 (470)
Q Consensus 71 ~~~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 141 (470)
.|+++||+++.+ |....+..+..++.+.+ ++|..+..+.+.... .+.....|++++....
T Consensus 4 ~m~~~ri~vl~S-----G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~------l~~A~~~gIp~~~~~~~~~~~r~ 72 (209)
T 4ds3_A 4 SMKRNRVVIFIS-----GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGG------LAKAEAAGIATQVFKRKDFASKE 72 (209)
T ss_dssp --CCEEEEEEES-----SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCGGGSSSHH
T ss_pred cCCCccEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHH------HHHHHHcCCCEEEeCccccCCHH
Confidence 366789988874 44567888888887643 677666554332211 2345567888765321
Q ss_pred -----hhhHHhhcCCcEEEEcc
Q 012132 142 -----QETINTALKADLIVLNT 158 (470)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 73 ~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 73 AHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEec
Confidence 12344668999999875
|
| >2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=2.5 Score=35.39 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=31.4
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHH-HHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFL-LRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~-L~~~G~~V~v~~~~ 113 (470)
||||+++..+...+|. ...+..+++. |.+.|++|.++-..
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 5799999876655565 6777888888 89899999998743
|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A | Back alignment and structure |
|---|
Probab=80.89 E-value=8.2 Score=29.06 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=70.2
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH---hcCEEEEccCCcccccchHHHHHHhc---
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~---~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (470)
..+++|+.+.. .....+++..++.|.. .+.......+....+. ..|++++-.. -.+.-|+.+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~-~p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWN-MPEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSC-CSSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCC
Confidence 45678887752 4677788888887754 3444443333333332 3678776433 134456778877753
Q ss_pred --CCCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 382 --QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 382 --G~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
.+|+|... ... ..+.+..|..+++..|-+ .++|.++|..++..
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 79 FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLGT 127 (129)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHCC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhcc
Confidence 57877543 222 233455678899999988 99999999988753
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=80.82 E-value=12 Score=29.17 Aligned_cols=112 Identities=9% Similarity=0.123 Sum_probs=67.6
Q ss_pred ceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHh---cC
Q 012132 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 382 (470)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G 382 (470)
..+++|+.+.. .....+.....+.|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 3 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPD 75 (155)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCC
Confidence 35677777652 456777777777664 3544333333333332 35887765431 3334556665553 46
Q ss_pred CCEEecC-CCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHH
Q 012132 383 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 428 (470)
Q Consensus 383 ~PvI~s~-~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 428 (470)
+|+|... ... ..+.+..|..+++..|.+ .++|..+|..++....
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEKRR 123 (155)
T ss_dssp SCEEEEECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHHHH
Confidence 8887543 222 233445677899999988 9999999999876433
|
| >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A | Back alignment and structure |
|---|
Probab=80.57 E-value=6 Score=35.87 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=46.0
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhH----HHhhhhhhhhcceeeEecCCh-----h
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKGQ-----E 143 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~ 143 (470)
++|||+|+.+. .+.....++|.+.||+|..+...++.+.... ...........|++++..... .
T Consensus 2 ~~mrIvf~Gt~-------~fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 74 (314)
T 1fmt_A 2 ESLRIIFAGTP-------DFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQ 74 (314)
T ss_dssp CCCEEEEEECS-------HHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHH
T ss_pred CCCEEEEEecC-------HHHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHH
Confidence 35899999862 2444555666677999875554432221110 012344556778887654332 2
Q ss_pred hHHhhcCCcEEEEcc
Q 012132 144 TINTALKADLIVLNT 158 (470)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (470)
...+..+||++++-.
T Consensus 75 ~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 75 QLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHTTCSEEEEES
T ss_pred HHHHhcCCCEEEEee
Confidence 344678999998864
|
| >3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=80.32 E-value=8.2 Score=32.66 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=46.4
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC--CceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (470)
||||.++.. |....+..+.++|.+. +++|..+....+.. .........|++++....
T Consensus 3 m~ki~vl~s-----G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~~~~~~~~~~~ 71 (212)
T 3av3_A 3 MKRLAVFAS-----GSGTNFQAIVDAAKRGDLPARVALLVCDRPGA------KVIERAARENVPAFVFSPKDYPSKAAFE 71 (212)
T ss_dssp CEEEEEECC-----SSCHHHHHHHHHHHTTCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEE-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCcccccchhhhH
Confidence 367877764 3345677888888876 68886655443322 134455677888764321
Q ss_pred --hhhHHhhcCCcEEEEcc
Q 012132 142 --QETINTALKADLIVLNT 158 (470)
Q Consensus 142 --~~~~~~~~~~DiV~~~~ 158 (470)
.....+..+||+|++-.
T Consensus 72 ~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEch
Confidence 12334568999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 470 | ||||
| d1rzua_ | 477 | c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte | 1e-12 | |
| d2bisa1 | 437 | c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro | 5e-12 | |
| d2iw1a1 | 370 | c.87.1.8 (A:2-371) Lipopolysaccharide core biosynt | 2e-07 | |
| d1uqta_ | 456 | c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA | 5e-05 |
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Score = 67.0 bits (162), Expect = 1e-12
Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 34/301 (11%)
Query: 181 LWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240
+ + +++ L L V+ + + +TAE+ + + + + G
Sbjct: 191 IEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEF-GMGLEGVIGSRAHVLHGIVNGID 249
Query: 241 KELMEVAEDNVA-----------KRVLREHVRESLGVRNED-LLFAIINSVSRGKGQDLF 288
++ A D++ + + ++ V E + ++ LF +I+ ++ KG DL
Sbjct: 250 ADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLM 309
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
+ E + L V++G+ E L + + V
Sbjct: 310 AEAVDEIVSL---------GGRLVVLGAGD---VALEGALLAAASRHHGRVGVAIGYNEP 357
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV 408
A D + E G + A+ + + GG + V++ L
Sbjct: 358 LSHLMQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASK 415
Query: 409 GKEGIT-------PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 461
G+ L + I + + + +K A A + ++
Sbjct: 416 AATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSAGLYAALYSQL 475
Query: 462 L 462
+
Sbjct: 476 I 476
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Score = 65.2 bits (157), Expect = 5e-12
Identities = 50/287 (17%), Positives = 85/287 (29%), Gaps = 17/287 (5%)
Query: 182 WWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA--EYWKNRTRERLRIKMPDTYVVHLGN 239
+ G Y P G I VT + R V G
Sbjct: 160 AFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGI 219
Query: 240 SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 299
+ ++ ++ + G+ I KG D+ L + I
Sbjct: 220 DCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIE-----I 274
Query: 300 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDV 359
K E + +IIG + R+ + + + V ++D
Sbjct: 275 LSSKKEFQEMRFIIIGKGDPELEGW---ARSLEEKHGNVKVITEMLSREFVRELYGSVDF 331
Query: 360 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 419
++ S FG + +EAM + +A GG +I+ N TG+L G LA
Sbjct: 332 VIIPSYFE--PFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGD--PGELANA 386
Query: 420 IVK-LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 465
I+K L + +R F AER + ++
Sbjct: 387 ILKALELSRSDLSKFRENCKKRAMS-FSWEKSAERYVKAYTGSIDRA 432
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (119), Expect = 2e-07
Identities = 47/387 (12%), Positives = 110/387 (28%), Gaps = 24/387 (6%)
Query: 76 LVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
+V ++ GG M +A + G V T + + ++ +
Sbjct: 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTN 60
Query: 135 QVISAKGQETINTALKA---DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191
+A+ + LK D +V + G + + +++ + Y
Sbjct: 61 HGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRY 120
Query: 192 FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV 251
+ G + + ++ + + ++ G + +
Sbjct: 121 RHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGI----YPDRKYSE 176
Query: 252 AKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311
RE R+ G++ + L + S KG D + + E ++ L
Sbjct: 177 QIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQD 236
Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF 371
+ A+ ++ + + L Y A +++ + G
Sbjct: 237 KPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAG--- 293
Query: 372 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 431
LPVL TA G + + G + L + + K T R+
Sbjct: 294 -----------LPVLTTAVCGYAHYIADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRM 341
Query: 432 TMGKRGYERVKEIFQEHHMAERIAVVL 458
+ + + E+ A ++
Sbjct: 342 AWAENARHYADT-QDLYSLPEKAADII 367
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (101), Expect = 5e-05
Identities = 32/248 (12%), Positives = 72/248 (29%), Gaps = 30/248 (12%)
Query: 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG---KGQDL 287
T V +G + + L + E V+ I SV R KG
Sbjct: 219 RTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQ-------NIFSVERLDYSKGLPE 271
Query: 288 FLHSFYESLELIKEKKLEVPSV-HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
++ LE + ++ A D+ A +L N + +
Sbjct: 272 RFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTP 331
Query: 347 TLTVAPYLAAIDVLVQNSQAWG-------ECFGRITIEAMAFQLP-----VLGTAAGGTT 394
+ + ++ + + + E +A Q P ++ + G
Sbjct: 332 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAA 391
Query: 395 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAER 453
+ + L+ +A + + T + R++ + + + +H E
Sbjct: 392 NELTSA---LIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIVK-NDINHWQEC 445
Query: 454 IAVVLKEV 461
LK++
Sbjct: 446 FISDLKQI 453
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 100.0 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 100.0 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 100.0 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.96 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 99.95 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 99.93 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 99.5 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 99.26 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 99.18 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 99.14 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 98.92 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 98.61 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 98.56 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 98.45 | |
| d1l5wa_ | 796 | Maltodextrin phosphorylase (MALP) {Escherichia col | 98.35 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 98.2 | |
| d2gj4a1 | 824 | Glycogen phosphorylase {Rabbit (Oryctolagus cunicu | 98.14 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 98.12 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 97.93 | |
| d1pswa_ | 348 | ADP-heptose LPS heptosyltransferase II {Escherichi | 97.52 | |
| d1ygpa_ | 876 | Glycogen phosphorylase {Baker's yeast (Saccharomyc | 97.4 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 91.95 | |
| d1uana_ | 227 | Hypothetical protein TT1542 {Thermus thermophilus | 90.7 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.49 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 87.98 | |
| d2hy5a1 | 130 | Sulfurtransferase DsrE {Chromatium vinosum [TaxId: | 87.38 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.95 | |
| d2d1pa1 | 128 | tRNA 2-thiouridine synthesizing protein D, TusD {E | 86.91 | |
| d2d1pb1 | 119 | tRNA 2-thiouridine synthesizing protein C, TusC {E | 86.5 | |
| d2hy5b1 | 132 | Intracellular sulfur oxidation protein DsrF {Chrom | 86.4 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 85.47 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 83.43 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 82.85 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 82.83 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 82.53 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 82.12 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 81.33 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.17 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 80.15 |
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=1.9e-43 Score=350.39 Aligned_cols=365 Identities=16% Similarity=0.119 Sum_probs=247.3
Q ss_pred cEEEEEeeccCC----CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhh---------h-----hhhhhcceee
Q 012132 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL---------E-----HKMWDRGVQV 136 (470)
Q Consensus 75 ~kIl~v~~~~~~----~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~---------~-----~~~~~~~~~~ 136 (470)
|||++|+.++.| ||.+.++..|+++|+++||+|+|+++..+.........+ . ......++++
T Consensus 1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (477)
T d1rzua_ 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (477)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceEEEEEeccCCceEEEEEEEECCeeE
Confidence 799999988654 555789999999999999999999854321000000000 0 0000112222
Q ss_pred EecCC----------------------h--------------hhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccce
Q 012132 137 ISAKG----------------------Q--------------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (470)
Q Consensus 137 ~~~~~----------------------~--------------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (470)
+.... . .......+|||||+|+............... ...|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~~~~~~~~~~--~~ip~ 158 (477)
T d1rzua_ 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAET--PEIPS 158 (477)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSS--CCCCE
T ss_pred EEecChhhcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhcccCCCCCEEEecchhHHHHHHHHHHhhC--CCCCE
Confidence 11000 0 0011236899999998554433332222222 23589
Q ss_pred eeEEeeeccccc-hhh-------------------------hhcccccccceeeeehhhHHHHHHh-----hhhhhccCC
Q 012132 181 LWWIHEMRGHYF-KLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKM 229 (470)
Q Consensus 181 ~~~~h~~~~~~~-~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~ 229 (470)
++++|+...... ... ........+..++.+....+..... .........
T Consensus 159 V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~ 238 (477)
T d1rzua_ 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRA 238 (477)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTG
T ss_pred EEEEecccccccCCHHHHHHhhcchhhcccccccccchhHHHHHHHHhhhhhhhccHHHHHHHHHHhcCcchhhhhhhcc
Confidence 999997531110 000 0011123444555555443322111 000112234
Q ss_pred CceEEEecCCchhhhhHhhhHH-----------HHHHHHHHHHHHcCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHH
Q 012132 230 PDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (470)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~-~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~ 297 (470)
.++.+|+||+|.+.|.|..... ........++...++++ +.++|+++||+.++||++.+++|+.++.+
T Consensus 239 ~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~ 318 (477)
T d1rzua_ 239 HVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS 318 (477)
T ss_dssp GGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH
T ss_pred ccEEEEECCcchhhccccccccccccchhhhHHHhhhhHHHHHHhcccccCCccEEEEEeeeeecCCcHHHHHHHHHHHh
Confidence 6799999999999886642211 12233556777777764 45789999999999999999999998865
Q ss_pred HHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHH
Q 012132 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (470)
Q Consensus 298 ~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (470)
.+.+++++|.|.. .....+++....+ .++|.+.+.. +++..+|++||++|+||. +|+||+++
T Consensus 319 ---------~~~~l~~~G~G~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~--~E~fglv~ 382 (477)
T d1rzua_ 319 ---------LGGRLVVLGAGDV---ALEGALLAAASRH--HGRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQ 382 (477)
T ss_dssp ---------TTCEEEEEECBCH---HHHHHHHHHHHHT--TTTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHH
T ss_pred ---------hCCeEEEEecCCc---hHHHHHHHHHhhc--CCeEEEEcccChhHHHHHHHhCccccCCcc--ccCCCHHH
Confidence 5788999998842 3444555555544 5789988864 456678999999999999 89999999
Q ss_pred HHHHhcCCCEEecCCCCcceeeecCc---------eeeeecCCCCChHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHH
Q 012132 376 IEAMAFQLPVLGTAAGGTTEIVVNGT---------TGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKE 443 (470)
Q Consensus 376 lEAma~G~PvI~s~~~g~~e~v~~~~---------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~ 443 (470)
+|||+||+|||+|+.||++|+|.|+. +|++++++| +++|+++|.++++ |++.+++|++++. ++
T Consensus 383 lEAma~G~PvVas~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~~~~~~~a~---~~ 457 (477)
T d1rzua_ 383 LYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKLGM---KS 457 (477)
T ss_dssp HHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TC
T ss_pred HHHHHcCCCEEEcCCCCCcceeecCCccccccCCCceEEeCCCC--HHHHHHHHHHHHhhhCCHHHHHHHHHHHH---Hh
Confidence 99999999999999999999998864 899999999 9999999988775 8999999988875 36
Q ss_pred HcChhHHHHHHHHHHHHHH
Q 012132 444 IFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~l 462 (470)
+|||++++++|+++|++++
T Consensus 458 ~fsw~~~a~~~~~lY~~ll 476 (477)
T d1rzua_ 458 DVSWEKSAGLYAALYSQLI 476 (477)
T ss_dssp CCBHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999986
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-43 Score=335.18 Aligned_cols=342 Identities=15% Similarity=0.105 Sum_probs=245.5
Q ss_pred EEEEeecc-CCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC---------------
Q 012132 77 VLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------- 140 (470)
Q Consensus 77 Il~v~~~~-~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 140 (470)
|+|+...+ +.||+++++.+|+++|+++||+|+|+|........ .+++++...
T Consensus 2 i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 69 (370)
T d2iw1a1 2 VAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP------------KAFELIQVPVKSHTNHGRNAEYYA 69 (370)
T ss_dssp EEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC------------TTCEEEECCCCCSSHHHHHHHHHH
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHCCCEEEEEecCCCCCCC------------CceEEEEcCccccccchhhHHHHH
Confidence 67888654 56888999999999999999999999843221110 112221111
Q ss_pred ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeecccc------chhh--hhcccccccceeeeehh
Q 012132 141 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLD--YVKHLPLVAGAMIDSHV 212 (470)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~--~~~~~~~~~~~~~~s~~ 212 (470)
.........++|+||.+....+..... ..... ....+...+...... +... ........+..+..+..
T Consensus 70 ~~~~~~~~~~~d~v~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (370)
T d2iw1a1 70 WVQNHLKEHPADRVVGFNKMPGLDVYF--AADVC--YAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDK 145 (370)
T ss_dssp HHHHHHHHSCCSEEEESSCCTTCSEEE--CCSCC--HHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHH
T ss_pred HHHHHHHhcccceeeecccCchHHHHH--Hhhcc--cceeeeeecCccccccchhchhHHHHHHHHhhccCceEEEecHH
Confidence 112334568999999876433211000 00000 000000001000000 0000 00011123344444444
Q ss_pred hHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHHHH
Q 012132 213 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSF 292 (470)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~a~ 292 (470)
. .+.+.+.++.+..++.+++||+|.+.+.+...+. .++..|+.+++++++++++++||+.+.||++.+++|+
T Consensus 146 ~----~~~~~~~~~~~~~~i~vi~~gv~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~ 217 (370)
T d2iw1a1 146 Q----IADFQKHYQTEPERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEAL 217 (370)
T ss_dssp H----HHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHH
T ss_pred H----HHHHHHhcCCCcceEEEEEeecccccccccCchh----hhhhhhhccCCCccceEEEEEeccccccchhhhcccc
Confidence 3 3344457788889999999999998765543221 2567899999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccc
Q 012132 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372 (470)
Q Consensus 293 ~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g 372 (470)
+++.+. .++..+.++|+++ ..+.+++++++++..++++|+|+++++.++|++||++|+||. .|+||
T Consensus 218 ~~l~~~-------~~~~~~~ii~g~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~--~E~~~ 283 (370)
T d2iw1a1 218 ASLPES-------LRHNTLLFVVGQD-----KPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEAAG 283 (370)
T ss_dssp HTSCHH-------HHHTEEEEEESSS-----CCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCSSC
T ss_pred cccccc-------cccceeeeccccc-----cccccccccccccccccccccccccccccccccccccccccc--ccccc
Confidence 988653 2556677666652 345688899999999999999999999999999999999998 89999
Q ss_pred hHHHHHHhcCCCEEecCCCCcceeeecCceeeee-cCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcChhHHH
Q 012132 373 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH-PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 451 (470)
Q Consensus 373 ~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~-~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~ 451 (470)
++++|||+||+|||+|+.||.+|++.++.+|+++ +++| +++|+++|.++++|++.+++|+++|++++++ |++..+.
T Consensus 284 ~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~~d--~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~-~~~~~~~ 360 (370)
T d2iw1a1 284 IVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYADT-QDLYSLP 360 (370)
T ss_dssp HHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-SCCSCHH
T ss_pred ceeeecccCCeeEEEeCCCChHHHhcCCCceEEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-hChhHHH
Confidence 9999999999999999999999999999999765 6677 9999999999999999999999999999855 8888888
Q ss_pred HHHHHHHH
Q 012132 452 ERIAVVLK 459 (470)
Q Consensus 452 ~~~~~~~~ 459 (470)
+++.++|+
T Consensus 361 ~~~~~ii~ 368 (370)
T d2iw1a1 361 EKAADIIT 368 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888775
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=6.4e-42 Score=335.75 Aligned_cols=367 Identities=17% Similarity=0.132 Sum_probs=256.9
Q ss_pred cEEEEEeeccCC---CchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhh----------hhhhcceeeEecCC
Q 012132 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH----------KMWDRGVQVISAKG 141 (470)
Q Consensus 75 ~kIl~v~~~~~~---~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 141 (470)
||||+++..++| ||.++++..|+++|+++||+|+|+++..+............ .....++.++....
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGG 80 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTSSCCEEEEEEECSSSEEEEEEEEEEETTEEEEEEES
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEecCCCccchhhccceeecccccceeeeeeccCCeEEEecCc
Confidence 899999998876 67799999999999999999999995443221110000000 00011222221100
Q ss_pred ------------h------------------hhH-HhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc
Q 012132 142 ------------Q------------------ETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH 190 (470)
Q Consensus 142 ------------~------------------~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 190 (470)
. ..+ .....||+||+|+...+... ..++.. ...|+++++|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiIh~~~~~~~~~~-~~~~~~---~~~~~v~~~h~~~~~ 156 (437)
T d2bisa1 81 GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAG-ALIKKY---FKIPAVFTIHRLNKS 156 (437)
T ss_dssp SGGGCSCTTCSHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSEEEEETGGGHHHH-HHHHHH---HCCCEEEEESSCCCC
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECChhhhhHh-hhhhcc---ccCceeEEEeecccc
Confidence 0 000 01246899999986654332 222221 125789999986543
Q ss_pred cchhhhh------c------------ccccccceeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHH
Q 012132 191 YFKLDYV------K------------HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (470)
Q Consensus 191 ~~~~~~~------~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 252 (470)
.+..... . .....+.+++.+... .......++....++.+|+||+|.+.|.+......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~----~~~~~~~~~~~~~ki~vi~~g~d~~~~~~~~~~~~ 232 (437)
T d2bisa1 157 KLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGY----LIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGS 232 (437)
T ss_dssp CEEHHHHHHTTCGGGCCSSEECHHHHHHHHSSEEEESCHHH----HHHTHHHHGGGTTTEEECCCCCCTTTSCGGGCCSC
T ss_pred ccchhhhhhccchhhhhHHHHHHHHHHHHhhhhhcccchhh----hhhhhhhhccccCceEEEecccccccccccccchh
Confidence 2211100 0 001122233333322 22233355667788999999999998877644444
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHH
Q 012132 253 KRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY 331 (470)
Q Consensus 253 ~~~~~~~~r~~~~~~~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~ 331 (470)
....+..++++++.. ++++++++||+. +.||++.+++|+..+.... +.++++|+|+|.|.+ .....++.+
T Consensus 233 ~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~-----~~~~~~lvi~G~~~~---~~~~~~~~~ 303 (437)
T d2bisa1 233 RDERKKSLLSKFGMD-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSKK-----EFQEMRFIIIGKGDP---ELEGWARSL 303 (437)
T ss_dssp HHHHHHHHHHHTTCC-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTSG-----GGGGEEEEEECCBCH---HHHHHHHHH
T ss_pred hHHHHHhhhhhhhcc-CCceEEEeecccccchhHHHHHhhhccccccc-----ccccceeeeeccccc---ccccchhhh
Confidence 444567788888875 567889999996 4799999999998774321 247899999999842 233344444
Q ss_pred HHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCC
Q 012132 332 VMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVG 409 (470)
Q Consensus 332 ~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~ 409 (470)
.+. ..+.+.+.|.. +++..+++.||++++||. .|++|++++|||+||+|||+|+.||..|++.+ ++|++++++
T Consensus 304 ~~~--~~~~~~~~~~~~~~~~~~~~~~adi~v~~s~--~e~~~~~~~Eama~G~Pvi~~~~g~~~e~i~~-~~G~~~~~~ 378 (437)
T d2bisa1 304 EEK--HGNVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAG 378 (437)
T ss_dssp HHT--CTTEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHTTTCEEEEESCTTHHHHCCT-TTCEEECTT
T ss_pred ccc--cccceeccccCcHHHHHHHHhhhcccccccc--ccccchHHHHHHHCCCCEEEeCCCCcHHhEEC-CcEEEECCC
Confidence 443 34567777764 779999999999999999 99999999999999999999999999999875 589999999
Q ss_pred CCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhhh
Q 012132 410 KEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 466 (470)
Q Consensus 410 d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~l~~~~ 466 (470)
| +++|+++|.++++ |++.++++++++++.++ +|||++++++++++|++++++..
T Consensus 379 d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-~~s~~~~a~~~~~iY~~~i~r~~ 433 (437)
T d2bisa1 379 D--PGELANAILKALELSRSDLSKFRENCKKRAM-SFSWEKSAERYVKAYTGSIDRAF 433 (437)
T ss_dssp C--HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHH-HSCHHHHHHHHHHHHHTCSCCBC
T ss_pred C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhHh
Confidence 8 9999999999987 67889999999999875 59999999999999999887654
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.96 E-value=1.4e-29 Score=219.00 Aligned_cols=192 Identities=20% Similarity=0.249 Sum_probs=158.1
Q ss_pred CCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeC
Q 012132 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (470)
Q Consensus 238 gvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~ 316 (470)
|||.+.|.+......+...+..+++++|++ +..+|+|+||+. ++||++.+++|++.+.+.. .+++++|+|+|.
T Consensus 1 gid~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~il~~Grl~~~~Kg~~~li~a~~~l~~~~-----~~~~~~l~i~G~ 74 (196)
T d2bfwa1 1 GIDCSFWNESYLTGSRDERKKSLLSKFGMD-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSKK-----EFQEMRFIIIGK 74 (196)
T ss_dssp CCCTTTSSGGGSCSCHHHHHHHHHHHTTCC-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTSG-----GGGGEEEEEECC
T ss_pred CcChhhcCCCCCCchhHHHHHHHHHHhCCC-CCCEEEEEcCCCccccCHHHHHHHHHhhhccc-----CCCCeEEEEEee
Confidence 788998877654444455578899999994 667788999996 5899999999999874321 348999999998
Q ss_pred CCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcc
Q 012132 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 394 (470)
Q Consensus 317 g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~ 394 (470)
|.+ .+...++.+.+.+ .+.+.+.|.. +++..+|+.||++|+||. .|++|++++|||+||+|||+++.|+..
T Consensus 75 g~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~di~v~ps~--~e~~~~~~~Eam~~G~pvI~~~~~~~~ 147 (196)
T d2bfwa1 75 GDP---ELEGWARSLEEKH--GNVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLR 147 (196)
T ss_dssp BCH---HHHHHHHHHHHHC--TTEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEEEESCHHHH
T ss_pred ccc---chhhhhhhhhhcc--ceeEEeeeccccccchhccccccccccccc--cccccccchhhhhcCceeeecCCCccc
Confidence 741 2344445554544 3456666765 689999999999999999 999999999999999999999999999
Q ss_pred eeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHcC
Q 012132 395 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 446 (470)
Q Consensus 395 e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs 446 (470)
|++.+ .+|++++++| +++++++|.++++ +++.+.+++++|++++.+ ||
T Consensus 148 e~i~~-~~g~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~-fs 196 (196)
T d2bfwa1 148 DIITN-ETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 196 (196)
T ss_dssp HHCCT-TTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred eeecC-CceeeECCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CC
Confidence 98855 6899999998 9999999999888 788999999999999865 76
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.8e-26 Score=219.88 Aligned_cols=295 Identities=11% Similarity=0.033 Sum_probs=207.3
Q ss_pred cCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccch-------hhhhcccccccceeeeehhhHHHHHHhh
Q 012132 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-------LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (470)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (470)
.+-|+|++|+...... ...++...+. .++.+.+|...+.... ......+-..+.+..........+....
T Consensus 121 ~~~d~iwvhDyhl~ll-p~~lR~~~~~--~~i~~flH~pfP~~~~fr~lp~~~~il~~ll~~d~igf~~~~~~~~fl~~~ 197 (456)
T d1uqta_ 121 QDDDIIWIHDYHLLPF-AHELRKRGVN--NRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCL 197 (456)
T ss_dssp CTTCEEEEESGGGTTH-HHHHHHTTCC--SCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCeEEEeccchhhh-HHHHHHhCCC--CcEEEEeCCCCCChHHhccCcchHHHHHHhhccccccccCHHHHHHHHHHH
Confidence 3458999998665443 3444444443 4677888876543211 1122222233444444433333333322
Q ss_pred hhhhcc------------CCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHH
Q 012132 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (470)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll 289 (470)
....+. ...++.++|+|+|.+.|........ .....+++.++ .++.+|+++||+++.||++.++
T Consensus 198 ~~ll~~~~~~~~~i~~~gr~v~v~~~p~GID~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~il~V~Rld~~KGi~~~l 273 (456)
T d1uqta_ 198 SNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL-PPKLAQLKAEL---KNVQNIFSVERLDYSKGLPERF 273 (456)
T ss_dssp HHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCC-CHHHHHHHHHT---TTCEEEEEECCBCGGGCHHHHH
T ss_pred HHHhCcccccCCeEEecCceeeeeeecCcccchhhhhhcccHH-HHHHHHHHHhc---CCCeEEEEeCCCchhhchHHHH
Confidence 222211 1236889999999999876533221 11234455555 4788999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHH----HHHHHHHHHh-------cCCCCcEEEeccc--CCHHHHHHh
Q 012132 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF----ESELRNYVMQ-------KKIQDRVHFVNKT--LTVAPYLAA 356 (470)
Q Consensus 290 ~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~----~~~l~~~~~~-------~~l~~~V~~~g~~--~~~~~~~~~ 356 (470)
+|++++++..++. ..++.++.+|.+...+.+. ..++.+++.+ .+..+.+.+.+.. +++..+|+.
T Consensus 274 ~A~~~~l~~~p~~---~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~~~~v~~~~~~~~~~l~a~~~~ 350 (456)
T d1uqta_ 274 LAYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 350 (456)
T ss_dssp HHHHHHHHHCGGG---TTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCccc---cccEEEEEEcCCcccchHHHHHHHHHHHHHHHHHHhhhccCCCCceeeccCCcCHHHHhHHHhh
Confidence 9999987744331 1357788888765443332 2333333332 3566778888764 789999999
Q ss_pred cCEEEEccCCcccccchHHHHHHhcCCC-----EEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHh-CHHHH
Q 012132 357 IDVLVQNSQAWGECFGRITIEAMAFQLP-----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 430 (470)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~P-----vI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~ 430 (470)
||++++||. .||||++++|||+||+| +|+|+.+|+.+.+. .|++++|.| ++++|++|.++++ +++.+
T Consensus 351 Adv~v~~s~--~EG~~lv~~Ea~a~~~p~~~g~lIlS~~~G~~~~l~---~g~lVnP~d--~~~~A~ai~~aL~~~~~er 423 (456)
T d1uqta_ 351 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYD--RDEVAAALDRALTMSLAER 423 (456)
T ss_dssp CSEEEECCS--SBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTC--HHHHHHHHHHHHTCCHHHH
T ss_pred hceeecCCc--cCCCCcHHHHHHHhCCCCCCCcEEEeCCCCCHHHhC---CeEEECcCC--HHHHHHHHHHHHcCCHHHH
Confidence 999999999 99999999999999999 99999999999984 389999999 9999999999998 57788
Q ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Q 012132 431 LTMGKRGYERVKEIFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 431 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 461 (470)
+++.+++++++.+ |++..+++.+++-++++
T Consensus 424 ~~~~~~~~~~v~~-~~~~~W~~~fl~~l~~~ 453 (456)
T d1uqta_ 424 ISRHAEMLDVIVK-NDINHWQECFISDLKQI 453 (456)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-CCHHHHHHHHHHHHHhh
Confidence 9999999999975 99999999988887764
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=5.3e-26 Score=190.53 Aligned_cols=140 Identities=23% Similarity=0.325 Sum_probs=119.8
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc-
Q 012132 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (470)
Q Consensus 269 ~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (470)
+.+ ++++||+.++||++.+++|++++ ++.+++|+|.+.... ..+.+.+.+.+.. .++|+|+|++
T Consensus 12 ~~~-~l~iGrl~~~K~~~~~i~a~~~l-----------~~~~l~ivg~~~~~~--~~~~~~~~~~~~~-~~~v~~~g~~~ 76 (166)
T d2f9fa1 12 GDF-WLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFSKGD--HAERYARKIMKIA-PDNVKFLGSVS 76 (166)
T ss_dssp CSC-EEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCCTTS--THHHHHHHHHHHS-CTTEEEEESCC
T ss_pred CCE-EEEEecCccccCHHHHHHHHHHh-----------cCCeEEEEEeccccc--chhhhhhhhcccc-cCcEEEeeccc
Confidence 344 67999999999999999999866 788999999875432 3444544444443 4689999986
Q ss_pred -CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhC
Q 012132 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 426 (470)
+++.++|+.||++++||. .|++|++++|||++|+|||+++.++..|++.++.+|+++++ | +++++++|.++++|
T Consensus 77 ~~~~~~~~~~ad~~i~ps~--~e~~~~~~~Ea~~~g~pvi~s~~~~~~e~i~~~~~g~~~~~-d--~~~~~~~i~~l~~~ 151 (166)
T d2f9fa1 77 EEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNA-D--VNEIIDAMKKVSKN 151 (166)
T ss_dssp HHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECS-C--HHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccc--cccccccccccccccccceeecCCcceeeecCCcccccCCC-C--HHHHHHHHHHHHhC
Confidence 679999999999999999 99999999999999999999999999999999999998765 6 99999999999998
Q ss_pred HH
Q 012132 427 VE 428 (470)
Q Consensus 427 ~~ 428 (470)
++
T Consensus 152 ~~ 153 (166)
T d2f9fa1 152 PD 153 (166)
T ss_dssp TT
T ss_pred HH
Confidence 65
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=7.4e-12 Score=116.62 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=167.6
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC--------------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------- 140 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 140 (470)
|||++.+. ..||.-..+..++++|.++||||.+++...+.. ...+...++.+....
T Consensus 1 kkili~~~--GtGGHv~~a~al~~~L~~~G~eV~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (351)
T d1f0ka_ 1 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--------ADLVPKHGIEIDFIRISGLRGKGIKALIA 70 (351)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--------HHHGGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred CEEEEEcC--CcHHHHHHHHHHHHHHHhCCCEEEEEEeCCcch--------hhcccccCCcEEEEECCCcCCCCHHHHHH
Confidence 68999764 223334668899999999999999988543321 122223343332211
Q ss_pred ----------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccccchhhhhcccccccceeeee
Q 012132 141 ----------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS 210 (470)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~s 210 (470)
....+....++|++.+............... ...|.+.+.++............ . ...+...
T Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~ip~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ 142 (351)
T d1f0ka_ 71 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWS----LGIPVVLHEQNGIAGLTNKWLAK---I-ATKVMQA 142 (351)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHH----TTCCEEEEECSSSCCHHHHHHTT---T-CSEEEES
T ss_pred HHHHHHHhHHHHHHHhhccccceeeecccchhhhhhhhhhh----cccceeecccccccchhHHHhhh---h-cceeecc
Confidence 0123445689999987654433322222211 11345544444322221111111 1 1111111
Q ss_pred hhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHHHHH
Q 012132 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (470)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ll~ 290 (470)
. .........+.++.......... .+.+.....++..++.+|.- .|-..+.+
T Consensus 143 ~--------------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~gs---~g~~~~~~ 194 (351)
T d1f0ka_ 143 F--------------PGAFPNAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGS---QGARILNQ 194 (351)
T ss_dssp S--------------TTSSSSCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTT---TCCHHHHH
T ss_pred c--------------cccccceeEEcCCcccccccchh-----------HHhhhhcccCCccccccccc---chhhhhHH
Confidence 0 11122344555555444332221 12223344566666655532 23333444
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEEccCCcccc
Q 012132 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (470)
Q Consensus 291 a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~ 370 (470)
.+.+....+. .....++++... ........... ....++...++.+++.++|+.||++| .-+
T Consensus 195 ~~~~~~~~l~------~~~~~i~~~~~~----~~~~~~~~~~~--~~~~~~~v~~f~~~~~~lm~~adl~I------t~~ 256 (351)
T d1f0ka_ 195 TMPQVAAKLG------DSVTIWHQSGKG----SQQSVEQAYAE--AGQPQHKVTEFIDDMAAAYAWADVVV------CRS 256 (351)
T ss_dssp HHHHHHHHHG------GGEEEEEECCTT----CHHHHHHHHHH--TTCTTSEEESCCSCHHHHHHHCSEEE------ECC
T ss_pred HHHHhhhhhc------ccceeeeecccc----chhhhhhhhcc--cccccceeeeehhhHHHHHHhCchhh------ccc
Confidence 4444333332 223344444432 12222222222 23457888999999999999999999 344
Q ss_pred cchHHHHHHhcCCCEEecCCC---C----cceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 012132 371 FGRITIEAMAFQLPVLGTAAG---G----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 443 (470)
Q Consensus 371 ~g~~~lEAma~G~PvI~s~~~---g----~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 443 (470)
-+.++.||+++|+|+|....+ + ..+.+++.+.|..++..+.+.+.+.++|..+ +++.+.+|++++++.
T Consensus 257 G~~T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~~~~~~~~~~e~l~~~l~~l--~~~~~~~~~~~~~~~--- 331 (351)
T d1f0ka_ 257 GALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAA--- 331 (351)
T ss_dssp CHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHT---
T ss_pred cchHHHHHHHhCCceeeeecccCCchHHHHHHHHHHCCCEEEechhhCCHHHHHHHHHhh--CHHHHHHHHHHHHcc---
Confidence 468999999999999986543 2 1334556667888876554567888887765 667778888888753
Q ss_pred HcChhHHHHHHHHHHHHH
Q 012132 444 IFQEHHMAERIAVVLKEV 461 (470)
Q Consensus 444 ~fs~~~~~~~~~~~~~~~ 461 (470)
.-...++++.+...++
T Consensus 332 --~~~~~a~~i~~~i~~l 347 (351)
T d1f0ka_ 332 --SIPDATERVANEVSRV 347 (351)
T ss_dssp --CCTTHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHH
Confidence 2223344445544444
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.26 E-value=2.3e-11 Score=115.26 Aligned_cols=88 Identities=11% Similarity=0.090 Sum_probs=70.3
Q ss_pred CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCC
Q 012132 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKE 411 (470)
Q Consensus 336 ~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~ 411 (470)
.++++|.+.++. ....++..+|++| ..|...++.||+++|+|+|+....+ ..+.+++.+.|...+..+.
T Consensus 283 ~~~~~v~~~~~~-p~~~ll~~~~~~I------~hgG~~t~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~G~g~~l~~~~~ 355 (401)
T d1rrva_ 283 DDRDDCFAIDEV-NFQALFRRVAAVI------HHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTP 355 (401)
T ss_dssp CCCTTEEEESSC-CHHHHGGGSSEEE------ECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCC
T ss_pred cCCCCEEEEecc-CcHHHhhhccEEE------ecCCchHHHHHHHhCCCEEEecccccHHHHHHHHHHCCCEEEcCcCCC
Confidence 456789999997 4678899999999 5666789999999999999987655 3445566678999888766
Q ss_pred ChHHHHHHHHHHHhCHHHHH
Q 012132 412 GITPLAKNIVKLATHVERRL 431 (470)
Q Consensus 412 ~~~~la~~i~~ll~~~~~~~ 431 (470)
+++.|+++|.++++ ++.++
T Consensus 356 ~~~~L~~ai~~vl~-~~~r~ 374 (401)
T d1rrva_ 356 TFESLSAALTTVLA-PETRA 374 (401)
T ss_dssp CHHHHHHHHHHHTS-HHHHH
T ss_pred CHHHHHHHHHHHhC-HHHHH
Confidence 68999999999994 55443
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.18 E-value=9.2e-10 Score=103.76 Aligned_cols=84 Identities=10% Similarity=-0.028 Sum_probs=67.7
Q ss_pred CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeecCceeeeecCCCC
Q 012132 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKE 411 (470)
Q Consensus 336 ~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~~~~G~l~~~~d~ 411 (470)
.++++|++.++.. ..++|..+|++| ..|...++.||+++|+|+|+....+ ..+.+++.+.|...+..+.
T Consensus 282 ~~~~nv~~~~~~p-~~~~l~~~~~~V------~hgG~~t~~Eal~~GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~ 354 (401)
T d1iira_ 282 DDGADCFAIGEVN-HQVLFGRVAAVI------HHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIP 354 (401)
T ss_dssp SCGGGEEECSSCC-HHHHGGGSSEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSC
T ss_pred cCCCCEEEEeccC-HHHHHhhcCEEE------ecCCchHHHHHHHhCCCEEEccccccHHHHHHHHHHCCCEEEcCcCCC
Confidence 3467899999974 578899999999 5667899999999999999976543 3444556668888887765
Q ss_pred ChHHHHHHHHHHHhC
Q 012132 412 GITPLAKNIVKLATH 426 (470)
Q Consensus 412 ~~~~la~~i~~ll~~ 426 (470)
++++|+++|.+++++
T Consensus 355 ~~~~l~~ai~~~l~~ 369 (401)
T d1iira_ 355 TFDSLSAALATALTP 369 (401)
T ss_dssp CHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHhCH
Confidence 699999999999954
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.14 E-value=6.6e-10 Score=104.55 Aligned_cols=84 Identities=11% Similarity=0.074 Sum_probs=67.1
Q ss_pred CCCCcEEEecccCCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC--------cceeeecCceeeeec
Q 012132 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHP 407 (470)
Q Consensus 336 ~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g--------~~e~v~~~~~G~l~~ 407 (470)
...++|.+.++. +...++..+|++|..+- ..++.|||++|+|+|+....+ ..+.+.+.+.|..++
T Consensus 267 ~~~~~v~i~~~~-p~~~ll~~a~~~v~hgG------~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~ 339 (391)
T d1pn3a_ 267 DDGADCFVVGEV-NLQELFGRVAAAIHHDS------AGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVD 339 (391)
T ss_dssp SCCTTCCEESSC-CHHHHHTTSSCEEEESC------HHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEEC
T ss_pred cCCCCEEEeccc-CHHHHHhhccEEEecCc------hHHHHHHHHhCCcEEEeccccCCcchHHHHHHHHHHCCCEEEcC
Confidence 345789999997 46788999999996653 578999999999999987544 234455667899888
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 012132 408 VGKEGITPLAKNIVKLATH 426 (470)
Q Consensus 408 ~~d~~~~~la~~i~~ll~~ 426 (470)
..+.++++|+++|.+++++
T Consensus 340 ~~~~~~~~l~~~i~~~l~~ 358 (391)
T d1pn3a_ 340 GPVPTIDSLSAALDTALAP 358 (391)
T ss_dssp CSSCCHHHHHHHHHHHTST
T ss_pred cCCCCHHHHHHHHHHHhCH
Confidence 8766689999999999965
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=9.5e-09 Score=95.55 Aligned_cols=334 Identities=14% Similarity=0.055 Sum_probs=184.5
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee---Eec---C------
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV---ISA---K------ 140 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~------ 140 (470)
|+||++++..-+- -..+..+.++|++. ++++.++....... . ....+...|+.. +.. .
T Consensus 2 MkkI~~v~GtR~e---~~kl~pli~~l~~~~~~~~~li~tG~H~~--~----~~~~~~~~~i~~d~~l~~~~~~~s~~~~ 72 (373)
T d1v4va_ 2 MKRVVLAFGTRPE---ATKMAPVYLALRGIPGLKPLVLLTGQHRE--Q----LRQALSLFGIQEDRNLDVMQERQALPDL 72 (373)
T ss_dssp CEEEEEEECSHHH---HHHHHHHHHHHHTSTTEEEEEEECSSCHH--H----HHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred CCeEEEEEEhhHH---HHHHHHHHHHHHhCCCCCEEEEEccCChh--h----hhCcchhcCCCccccCCCCCCCCCHHHH
Confidence 4689999842110 13567789999874 78988777443211 1 111222223221 000 0
Q ss_pred ------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEee-ec-ccc----chhhhhcccc-ccccee
Q 012132 141 ------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHE-MR-GHY----FKLDYVKHLP-LVAGAM 207 (470)
Q Consensus 141 ------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-~~~----~~~~~~~~~~-~~~~~~ 207 (470)
....+....+||+|+++......+......... ..|+ .++|+ .. +.. .....+.... ..+.++
T Consensus 73 ~~~~~~~~~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~---~ipi-~HiegG~rsg~~~~~~~de~~R~~iskls~~hf 148 (373)
T d1v4va_ 73 AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLE---GIPV-GHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDF 148 (373)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHT---TCCE-EEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHhhhhhhcCcccccccccCccchhHHHHHHHh---hhhh-eeecccccccccccCcchhhhhhhhccccceee
Confidence 123455678999999887543333222222111 0222 23332 11 111 1112222222 223334
Q ss_pred eeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcCCCCCCeEEEEEeecccCCCHHH
Q 012132 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 287 (470)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~ 287 (470)
+.+....+.+. +.|.++.++.++.+.. .+.+... ....+.....+.+.+++++.-|-...++...
T Consensus 149 ~~t~~~~~~L~-----~~Ge~~~~I~~vG~p~-~D~i~~~---------~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~ 213 (373)
T d1v4va_ 149 APTPLAKANLL-----KEGKREEGILVTGQTG-VDAVLLA---------AKLGRLPEGLPEGPYVTVTMHRRENWPLLSD 213 (373)
T ss_dssp ESSHHHHHHHH-----TTTCCGGGEEECCCHH-HHHHHHH---------HHHCCCCTTCCSSCEEEECCCCGGGGGGHHH
T ss_pred ecchhhhhhhh-----hhcccccceeecccch-hhHHHhh---------hhhcccccccccccceeEEeccccccchHHH
Confidence 44444433333 5688888888887653 1211110 1111222344556788888888776677777
Q ss_pred HHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEEccC
Q 012132 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQ 365 (470)
Q Consensus 288 ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~ 365 (470)
+.+++..+.+ ...++.+++..... +.......+ .....+++.++... .+...+++.|++++-.|
T Consensus 214 ~~~~~~~~~~-------~~~~~~~i~p~~~~---~~~~~~~~~---~~~~~~n~~~~~~l~~~~~l~ll~~s~~vignS- 279 (373)
T d1v4va_ 214 LAQALKRVAE-------AFPHLTFVYPVHLN---PVVREAVFP---VLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS- 279 (373)
T ss_dssp HHHHHHHHHH-------HCTTSEEEEECCSC---HHHHHHHHH---HHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-
T ss_pred HHHHHHHHhh-------hcccceeeeeeccc---ccchhhhhh---hhcccccceeeccchHHHHHHHhhhceeEeccc-
Confidence 7777776654 23566666554331 122222222 23334688888764 67788899999998555
Q ss_pred CcccccchHHHHHHhcCCCEEec-CCCCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 012132 366 AWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 444 (470)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~s-~~~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 444 (470)
|..+.||..+|+|+|.- +.|.-.|-+..|.+ .++.. | .+++.+++..++++++.+..+... ..-
T Consensus 280 ------ssgi~Ea~~lg~P~Inir~~~eRqeg~~~g~n-vlv~~-d--~~~I~~~i~~~l~~~~~~~~~~~~-----~np 344 (373)
T d1v4va_ 280 ------GGLQEEGAALGVPVVVLRNVTERPEGLKAGIL-KLAGT-D--PEGVYRVVKGLLENPEELSRMRKA-----KNP 344 (373)
T ss_dssp ------HHHHHHHHHTTCCEEECSSSCSCHHHHHHTSE-EECCS-C--HHHHHHHHHHHHTCHHHHHHHHHS-----CCS
T ss_pred ------chhhhcchhhcCcEEEeCCCccCHHHHhcCee-EEcCC-C--HHHHHHHHHHHHcCHHHHhhcccC-----CCC
Confidence 45688999999999988 45666666655543 44433 4 899999999999998876655331 122
Q ss_pred cChhHHHHHHHHHHHHHHHh
Q 012132 445 FQEHHMAERIAVVLKEVLKK 464 (470)
Q Consensus 445 fs~~~~~~~~~~~~~~~l~~ 464 (470)
|.--+.++++.+.+.+-+..
T Consensus 345 YGdG~as~rI~~~L~~~~~~ 364 (373)
T d1v4va_ 345 YGDGKAGLMVARGVAWRLGL 364 (373)
T ss_dssp SCCSCHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHhCC
Confidence 44455666667766666543
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=98.61 E-value=1e-06 Score=81.56 Aligned_cols=333 Identities=12% Similarity=0.070 Sum_probs=164.7
Q ss_pred cccEEEEEeeccCCCchh-HHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee-Ee--cC-------
Q 012132 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-IS--AK------- 140 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~-~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~------- 140 (470)
++|||++|+..-+ + ..+..+.++|.+. +.++.++........ . .......++.. +. ..
T Consensus 1 ~k~Ki~~v~GtR~----e~~kl~pli~~l~~~~~~~~~li~tG~H~~~---~---~~~~~~~~i~~~~~~~~~~~~~~~~ 70 (377)
T d1o6ca_ 1 KKLKVMTVFGTRP----EAIKMAPLVLELKKYPEIDSYVTVTAQHRQM---L---DQVLDAFHIKPDFDLNIMKERQTLA 70 (377)
T ss_dssp CCEEEEEEECSHH----HHHHHHHHHHHGGGCTTEEEEEEECCSCGGG---T---HHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred CCceEEEEEEchH----hHHHHHHHHHHHHhCCCCCEEEEEeCCCHHH---H---HHHHhhcCCCCceeeecCCCCCCHH
Confidence 4789999993211 1 3567789999876 678888774332211 1 11112222211 11 00
Q ss_pred --------ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeeccc------cchhhhhccccc-ccc
Q 012132 141 --------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPL-VAG 205 (470)
Q Consensus 141 --------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------~~~~~~~~~~~~-~~~ 205 (470)
.........+||+|+++......+......... ..|+ .++|+-... ......+..... .+.
T Consensus 71 ~~~~~~i~~~~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~---~Ipi-~HiegG~~s~~~~~~~~de~~R~~iskls~~ 146 (377)
T d1o6ca_ 71 EITSNALVRLDELFKDIKPDIVLVHGDTTTTFAGSLAAFYH---QIAV-GHVEAGLRTGNKYSPFPEELNRQMTGAIADL 146 (377)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHT---TCEE-EEESCCCCCSCTTTTTTHHHHHHHHHHHCSE
T ss_pred HHHHHHHHhhhhhhhhcccceeEeeecccccchhhhhhhhc---cceE-EEEecccccccccccCchhhhccccccceeE
Confidence 113455678999999987544333322222211 1233 334432111 112223333322 333
Q ss_pred eeeeehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhhHHHHHHHHHHHHHHcC-CCCCCeEEEEEeecccC-C
Q 012132 206 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRG-K 283 (470)
Q Consensus 206 ~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~vGrl~~~-K 283 (470)
+++.+....+.+. +.|.++.++.++.|..-.. +..... +......+. ...+.+++++.-|.... +
T Consensus 147 hf~~t~~~~~~L~-----~~G~~~~~I~~vG~~~~D~-i~~~~~-------~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~ 213 (377)
T d1o6ca_ 147 HFAPTGQAKDNLL-----KENKKADSIFVTGNTAIDA-LNTTVR-------DGYSHPVLDQVGEDKMILLTAHRRENLGE 213 (377)
T ss_dssp EEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHH-HHHHCC-------SSCCCSTTTTTTTSEEEEECC--------
T ss_pred Eeecchhhhhhhh-----hhccccceEeeccchhHHH-HHHHHH-------HHHhhhhhhhccCCceEEEEecccccccc
Confidence 4444444444433 5588888899888753222 111000 000001111 12345666666655432 2
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH-HhcCCCCcEEEeccc--CCHHHHHHhcCEE
Q 012132 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (470)
Q Consensus 284 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~-~~~~l~~~V~~~g~~--~~~~~~~~~aDv~ 360 (470)
.....+.++..+.. ..++..+++.... ........ +.+...++|.+.... .+...+++.|+++
T Consensus 214 ~~~~~~~~~~~~~~-------~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~v 279 (377)
T d1o6ca_ 214 PMENMFKAIRRIVG-------EFEDVQVVYPVHL-------NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFI 279 (377)
T ss_dssp --HHHHHHHHHHHH-------HCTTEEEEEC-----------CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEE
T ss_pred chHHHHHHHHhhcc-------ccccccccccccc-------ccccchhhhhccccccceEeccccchHHHHHHHhhhhee
Confidence 33344444444333 2255555544332 11222222 334455789998875 6788899999999
Q ss_pred EEccCCcccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 012132 361 VQNSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 439 (470)
Q Consensus 361 v~pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 439 (470)
+--| |..+.||-.+|+|+|.-+. +.-.+.+..| +-.+++. | .+++.+++.++++++..++.+.+
T Consensus 280 IgnS-------ss~i~Ea~~lg~P~Inir~~tERqe~~~~g-~nilv~~-~--~~~I~~~i~~~l~~~~~~~~~~~---- 344 (377)
T d1o6ca_ 280 LTDS-------GGVQEEAPSLGKPVLVLRDTTERPEGVEAG-TLKLAGT-D--EENIYQLAKQLLTDPDEYKKMSQ---- 344 (377)
T ss_dssp EEC---------CHHHHGGGGTCCEEEECSCCC---CTTTT-SSEEECS-C--HHHHHHHHHHHHHCHHHHHHHHH----
T ss_pred eccc-------chhHHhhhhhhceEEEeCCCCcCcchhhcC-eeEECCC-C--HHHHHHHHHHHHhChHHHhhhcc----
Confidence 9555 3358899999999997754 4455555444 3355554 4 89999999999998876655422
Q ss_pred HHHHHcChhHHHHHHHHHHHHHH
Q 012132 440 RVKEIFQEHHMAERIAVVLKEVL 462 (470)
Q Consensus 440 ~~~~~fs~~~~~~~~~~~~~~~l 462 (470)
...-|.--+.++++.+++.+-+
T Consensus 345 -~~npYGdG~as~rI~~~L~~~~ 366 (377)
T d1o6ca_ 345 -ASNPYGDGEASRRIVEELLFHY 366 (377)
T ss_dssp -CCCTTCCSCHHHHHHHHHHHHT
T ss_pred -CCCCCCCChHHHHHHHHHHHhh
Confidence 1122444455566666555443
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=98.56 E-value=4.6e-06 Score=79.28 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=59.2
Q ss_pred CcEEEecccCCHH-HHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----ccee-eecCceeeeecCCC--
Q 012132 339 DRVHFVNKTLTVA-PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEI-VVNGTTGLLHPVGK-- 410 (470)
Q Consensus 339 ~~V~~~g~~~~~~-~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~-v~~~~~G~l~~~~d-- 410 (470)
+++.+..+..+.. ..+..+|+|| .-|--.++.||+.+|+|+|+....+ ...- ++..+.|+..+...
T Consensus 330 ~n~~v~~~~pq~~~l~~p~~~~fI------tHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~~l~~~~~~ 403 (461)
T d2acva1 330 GKGMICGWAPQVEVLAHKAIGGFV------SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRK 403 (461)
T ss_dssp CSEEEESSCCHHHHHHSTTEEEEE------ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCT
T ss_pred CCeEEEecCCHHHHHhcccCCEEE------ecCCccHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceEEeeccccc
Confidence 5677776642222 2357889999 5555789999999999999986543 2333 34446787765432
Q ss_pred ----CChHHHHHHHHHHHhC-HHHHH
Q 012132 411 ----EGITPLAKNIVKLATH-VERRL 431 (470)
Q Consensus 411 ----~~~~~la~~i~~ll~~-~~~~~ 431 (470)
.+.++++++|.+++++ +..++
T Consensus 404 ~~~~~t~~~l~~a~~~vl~~d~~~r~ 429 (461)
T d2acva1 404 GSDVVAAEEIEKGLKDLMDKDSIVHK 429 (461)
T ss_dssp TCCCCCHHHHHHHHHHHTCTTCTHHH
T ss_pred cCCccCHHHHHHHHHHHhhCCHHHHH
Confidence 2479999999999964 43443
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.9e-05 Score=72.71 Aligned_cols=338 Identities=12% Similarity=0.079 Sum_probs=172.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhC-CceEEEEecCCCCCchhHHHhhhhhhhhcceee-E--ec----C------
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-I--SA----K------ 140 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~----~------ 140 (470)
|||++|+..-+- --.+..+.++|.+. +.++.++......+. ....+...++.. + .. .
T Consensus 1 MKi~~v~GtR~e---~~kl~pli~~l~~~~~~~~~li~tG~H~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (376)
T d1f6da_ 1 MKVLTVFGTRPE---AIKMAPLVHALAKDPFFEAKVCVTAQHREM------LDQVLKLFSIVPDYDLNIMQPGQGLTEIT 71 (376)
T ss_dssp CEEEEEECSHHH---HHHHHHHHHHHHHCTTCEEEEEECCTTGGG------GHHHHHHTTCCCSEECCCCSSSSCHHHHH
T ss_pred CeEEEEEEhhHh---HHHHHHHHHHHHhCCCCCEEEEEcCCCHHH------HHHHHHhcCCCCCcccccCCCCCCHHHHH
Confidence 789999832110 13567788999775 689988874332211 111122222211 0 00 0
Q ss_pred -----ChhhHHhhcCCcEEEEcccchhhhHHHHhhhcCCccccceeeEEeeec--ccc----chhhhhcccccc-cceee
Q 012132 141 -----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--GHY----FKLDYVKHLPLV-AGAMI 208 (470)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--~~~----~~~~~~~~~~~~-~~~~~ 208 (470)
.........+||+|+++......+......... ..|+ .++|+-. +.. .....+.....+ +-+++
T Consensus 72 ~~~i~~~~~~~~~~kPD~v~v~GDr~e~la~a~aa~~~---~ipi-~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~ 147 (376)
T d1f6da_ 72 CRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQ---RIPV-GHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFS 147 (376)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTT---TCCE-EEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhhHHHHHhccCcceeeeccccchhhHHHHHHhh---CceE-EEEecccccccccccCchhhhhhhhccceeEEEe
Confidence 123445678999999987543333332222211 1222 3344311 111 122233333322 33444
Q ss_pred eehhhHHHHHHhhhhhhccCCCceEEEecCCchhhhhHhhh-H-HHHHHHHHHHHHHcCCC-CCCeEEEEEeeccc-CCC
Q 012132 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAED-N-VAKRVLREHVRESLGVR-NEDLLFAIINSVSR-GKG 284 (470)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~-~-~~~~~~~~~~r~~~~~~-~~~~~i~~vGrl~~-~Kg 284 (470)
.+....+.+. +.|..+.+++++.+.. .+.+....+ . ......+....+..... ..++++++.-|... .+.
T Consensus 148 ~~~~~~~~L~-----~~G~~~~~I~~vG~~~-~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~ 221 (376)
T d1f6da_ 148 PTETSRQNLL-----RENVADSRIFITGNTV-IDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRG 221 (376)
T ss_dssp SSHHHHHHHH-----HTTCCGGGEEECCCHH-HHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHH
T ss_pred ccHHHHhHHH-----hcCCCccccceecCch-HHHHHHHHhhhhccchhhhhhhccccccCCCCceEEEecccchhhhhh
Confidence 4444444333 5688888899888753 222111100 0 00011112222222233 34455655555432 344
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEeccc--CCHHHHHHhcCEEEE
Q 012132 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (470)
Q Consensus 285 ~~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~ 362 (470)
...+++++..+.+ ...++.+++-.... +.......+ .+...+++.+.... .+...+++.|++++-
T Consensus 222 ~~~i~~~l~~~~~-------~~~~~~ii~p~~~~---~~~~~~~~~---~~~~~~ni~~~~~l~~~~fl~ll~~a~~vig 288 (376)
T d1f6da_ 222 FEEICHALADIAT-------THQDIQIVYPVHLN---PNVREPVNR---ILGHVKNVILIDPQEYLPFVWLMNHAWLILT 288 (376)
T ss_dssp HHHHHHHHHHHHH-------HCTTEEEEEECCBC---HHHHHHHHH---HHTTCTTEEEECCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHhhhhh-------hcceeEEecccccc---hhhhhhHhh---hhcccccceeeccccHHHHHHHHhhceEEEe
Confidence 5666666665543 22556665554321 112222222 23444688888764 667788999999996
Q ss_pred ccCCcccccchHHHHHHhcCCCEEecCC-CCcceeeecCceeeeecCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 012132 363 NSQAWGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 441 (470)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~s~~-~g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 441 (470)
-| |..+.||-.+|+|+|.-.. ..-++-+..+ +-.++.+ | .+++.+++.++++++..+..+.. .
T Consensus 289 nS-------ssgi~Ea~~lg~P~Inir~~ter~~~~~~g-~~i~v~~-~--~~~I~~ai~~~l~~~~~~~~~~~-----~ 352 (376)
T d1f6da_ 289 DS-------GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMSR-----A 352 (376)
T ss_dssp SS-------SGGGGTGGGGTCCEEECSSCCSCHHHHHHT-SEEECCS-S--HHHHHHHHHHHHHCHHHHHHHHH-----S
T ss_pred cC-------cchHhhHHHhCCCEEEcCCCccCccceecC-eeEECCC-C--HHHHHHHHHHHHhChHhhhhhcc-----C
Confidence 66 3467899999999996532 3345555433 3344443 4 89999999999988764443211 1
Q ss_pred HHHcChhHHHHHHHHHHHH
Q 012132 442 KEIFQEHHMAERIAVVLKE 460 (470)
Q Consensus 442 ~~~fs~~~~~~~~~~~~~~ 460 (470)
..-|.--+.++++.+++++
T Consensus 353 ~npYGdG~as~rI~~iLk~ 371 (376)
T d1f6da_ 353 HNPYGDGQACSRILEALKN 371 (376)
T ss_dssp CCTTCCSCHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHh
Confidence 1224444566666666554
|
| >d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Maltodextrin phosphorylase (MALP) species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=2.6e-05 Score=77.16 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=103.3
Q ss_pred CCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc-ccCCceEEEEEeCCCCcChHHHHHHHHHHHhc--------
Q 012132 265 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK-LEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-------- 335 (470)
Q Consensus 265 ~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~~-~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-------- 335 (470)
.++++.+.++++-|+..+|..++++.-...+...+++.. .....+++++.|...|++.+ ..++.+++.+.
T Consensus 521 ~ldp~~LtigfaRRfa~YKR~~L~~~~i~~l~~~l~~~~~~~~~Pvq~IfaGKAhP~d~~-gK~iIk~I~~va~~in~dp 599 (796)
T d1l5wa_ 521 EINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYL-AKNIIFAINKVADVINNDP 599 (796)
T ss_dssp CCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHH-HHHHHHHHHHHHHHHHTCT
T ss_pred ccChhhccchhhhhhhhhhcccchhhhHHHHHHHHhcCcccCCCceEEEEcCCCCCchHH-HHHHHHHHHHHHHHhcCCh
Confidence 356788999999999999999997766666656665421 01124889999987666542 33333322221
Q ss_pred CCC--CcEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--CceeeeecC
Q 012132 336 KIQ--DRVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPV 408 (470)
Q Consensus 336 ~l~--~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G~l~~~ 408 (470)
.+. .+|.|+.. . +--..++.++|+-+..++...|..|.+-+-||..|.+.+++--|...|+.++ ++||+++-.
T Consensus 600 ~~~~~~kVVFlenYdv~lA~~lv~g~DVwln~p~~p~EASGTSgMKaalNG~lnlstlDGw~vE~~~~vg~eN~f~fG~ 678 (796)
T d1l5wa_ 600 LVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGH 678 (796)
T ss_dssp TTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSC
T ss_pred hhccceeEEEeCCCchHHHHHHhcccchhhhCCCCCcccCCchHHHHHHcCCeeeecccchHHHHHHhcCccceEEecC
Confidence 111 26888875 3 3344557999999998887799999999999999999999998998888754 789998843
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=98.20 E-value=0.00015 Score=68.47 Aligned_cols=115 Identities=19% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCCC
Q 012132 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVGK 410 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~d 410 (470)
++||.+..+..+ .+++ ..+++|| .-|-..++.||+.+|+|+|+....+ ...-+ +..+.|...+. +
T Consensus 345 ~~Nv~~~~~~Pq-~~lL~hp~~~~fI------tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na~rv~~~~G~G~~l~~-~ 416 (473)
T d2pq6a1 345 ADRGLIASWCPQ-DKVLNHPSIGGFL------THCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDT-N 416 (473)
T ss_dssp TTTEEEESCCCH-HHHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCS-S
T ss_pred cCceEEeeeCCH-HHHhcCCcCcEEE------ecCCccHHHHHHHcCCCEEeccchhhhHHHHHHHHHHcCeEEeeCC-C
Confidence 468999888643 4566 5788888 5555689999999999999987543 23333 33367888774 4
Q ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCh-----hHHHHHHHHHHHHHH
Q 012132 411 EGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE-----HHMAERIAVVLKEVL 462 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~-----~~~~~~~~~~~~~~l 462 (470)
.+.++++++|.++++|+.. +++.++|++..+. +-. ......+.++.++++
T Consensus 417 ~t~~~l~~ai~~vl~d~~~-~~~r~~a~~l~~~-~~~a~~~gg~s~~~~~~~i~~~~ 471 (473)
T d2pq6a1 417 VKREELAKLINEVIAGDKG-KKMKQKAMELKKK-AEENTRPGGCSYMNLNKVIKDVL 471 (473)
T ss_dssp CCHHHHHHHHHHHHTSHHH-HHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHh
Confidence 4599999999999999763 3455555553322 211 122344566666654
|
| >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Glycogen phosphorylase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.14 E-value=2.4e-05 Score=77.46 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=99.7
Q ss_pred CCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh-cccCCceEEEEEeCCCCcChHHHHHHHHHHHhc----C---
Q 012132 265 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK----K--- 336 (470)
Q Consensus 265 ~~~~~~~~i~~vGrl~~~Kg~~~ll~a~~~l~~~l~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~----~--- 336 (470)
.++++.+.++++-|+..+|...+.+.-.-.+...+++. .......++++.|...|++. ...++-+++.+. +
T Consensus 545 ~ldp~~lfd~~arRfheYKRq~Ln~~~i~~ly~rlk~~~~~~~~P~q~IFaGKAhP~d~-~gK~iIk~I~~va~~in~dp 623 (824)
T d2gj4a1 545 HINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYH-MAKMIIKLITAIGDVVNHDP 623 (824)
T ss_dssp CCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCH-HHHHHHHHHHHHHHHHTTCT
T ss_pred CCCcchhhhhheeechhhhhhhhhHhhHHHHHHHhhhcccCCCCCeEEEEeCCCCCccH-HHHHHHHHHHHHHHHHhcCh
Confidence 46678899999999999999988443332222223221 11223578999998766554 334443333322 1
Q ss_pred -CC--CcEEEecc-c-CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCCcceeeec--CceeeeecC
Q 012132 337 -IQ--DRVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPV 408 (470)
Q Consensus 337 -l~--~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g~~e~v~~--~~~G~l~~~ 408 (470)
+. .+|.|+.. . +--..++.++|+....|+...|..|.+=+-+|..|.+.+++--|...|+.++ ++||+++-.
T Consensus 624 ~~~~~lkVvFlenY~v~lA~~li~g~Dvwln~p~~~~EASGTSgMK~alNGal~lstlDGwnvEi~~~vg~~N~~~fG~ 702 (824)
T d2gj4a1 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGM 702 (824)
T ss_dssp TTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSC
T ss_pred hhccceeEEEcCCCchHHHHHhhhhhhhhhcCCCCCcccCCcchhHHHHcCCeeeccccchHHHHHHhcCcccEEEeCC
Confidence 11 15888875 3 4445568999999998887799999999999999999999998998887764 778998753
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=98.12 E-value=3.8e-05 Score=72.57 Aligned_cols=85 Identities=15% Similarity=0.079 Sum_probs=63.7
Q ss_pred CCcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceeeec-CceeeeecCCC
Q 012132 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVN-GTTGLLHPVGK 410 (470)
Q Consensus 338 ~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v~~-~~~G~l~~~~d 410 (470)
++++.+..+..+. +++ ..+|+|| .-|-..++.||+.+|+|+|+....+ ...-+.+ .+.|...+.++
T Consensus 318 ~~nv~~~~~~pq~-~lL~hp~~~~fI------tHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 390 (450)
T d2c1xa1 318 RGYGMVVPWAPQA-EVLAHEAVGAFV------THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGV 390 (450)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGS
T ss_pred cccccccccCChH-hhhccCceeEEE------ccCCccHHHHHHHcCCCEEecccccchHHHHHHHHHHcCcEEEecCCC
Confidence 3578888876443 455 6778888 4555679999999999999987554 2333433 47888888776
Q ss_pred CChHHHHHHHHHHHhCHHH
Q 012132 411 EGITPLAKNIVKLATHVER 429 (470)
Q Consensus 411 ~~~~~la~~i~~ll~~~~~ 429 (470)
.+.+++.++|.++++|+..
T Consensus 391 ~t~~~l~~ai~~vL~d~~y 409 (450)
T d2c1xa1 391 FTKSGLMSCFDQILSQEKG 409 (450)
T ss_dssp CCHHHHHHHHHHHHHSHHH
T ss_pred cCHHHHHHHHHHHhcCcHH
Confidence 5689999999999999753
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=0.00081 Score=63.27 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=60.8
Q ss_pred CCCcEEEecccCCHHHHH--HhcCEEEEccCCcccccchHHHHHHhcCCCEEecCCCC----cceee-ecCceeeeecCC
Q 012132 337 IQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIV-VNGTTGLLHPVG 409 (470)
Q Consensus 337 l~~~V~~~g~~~~~~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s~~~g----~~e~v-~~~~~G~l~~~~ 409 (470)
.++||.+.++..+. ++| ..+++|| .-|-.+++.||+.+|+|+|+....+ ....+ +.-+.|+.....
T Consensus 332 ~~~nv~~~~w~Pq~-~lL~hp~~~~fV------tHGG~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv~l~~~ 404 (471)
T d2vcha1 332 KKRGFVIPFWAPQA-QVLAHPSTGGFL------THCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG 404 (471)
T ss_dssp TTTEEEEESCCCHH-HHHHSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCC
T ss_pred cCCCeeecccCCHH-HHhcCccCCEEE------ecCCccHHHHHHHcCCCEEEcccccccHHHHHHHHHHheeEEEEecC
Confidence 35789999997543 577 4688888 4555689999999999999986543 22223 323567655443
Q ss_pred C---CChHHHHHHHHHHHhCHH
Q 012132 410 K---EGITPLAKNIVKLATHVE 428 (470)
Q Consensus 410 d---~~~~~la~~i~~ll~~~~ 428 (470)
+ .+.++++++|.++++|++
T Consensus 405 ~~~~~t~~~l~~ai~~vl~~~~ 426 (471)
T d2vcha1 405 DDGLVRREEVARVVKGLMEGEE 426 (471)
T ss_dssp TTSCCCHHHHHHHHHHHHTSTH
T ss_pred CCCcCCHHHHHHHHHHHhCCcH
Confidence 2 247999999999999865
|
| >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: ADP-heptose LPS heptosyltransferase II domain: ADP-heptose LPS heptosyltransferase II species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00011 Score=66.70 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCCCCeEEEE-Ee-ecccCCCH--HHHHHHHHHHHHHHHhhcccCCceEEEEEeCCCCcChHHHHHHHHHH
Q 012132 257 REHVRESLGVRNEDLLFAI-IN-SVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (470)
Q Consensus 257 ~~~~r~~~~~~~~~~~i~~-vG-rl~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (470)
++...++++...++..+++ .| +-.+.|.+ +...+.+..+.+ .+.+++++|+.. ..+..++..
T Consensus 167 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~wp~~~~~~L~~~l~~---------~~~~ivl~g~~~-----e~~~~~~~~ 232 (348)
T d1pswa_ 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSAK-----DHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCGG-----GHHHHHHHH
T ss_pred HHHHHHHhccccCCCeEEeccccchhhccccchHHHhhhHHHHhh---------cCCccccccccc-----hHHHHHHHH
Confidence 3455667777766655444 43 22334653 345555555433 456788888652 222222322
Q ss_pred HhcCC---CCcEEEeccc--CCHHHHHHhcCEEEEccCCcccccchHHHHHHhcCCCEEec
Q 012132 333 MQKKI---QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 388 (470)
Q Consensus 333 ~~~~l---~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~s 388 (470)
+.... ..-+.+.|.. .++..+++.||++|.+.. | .+--|.++|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~Dt------g-~~HlAaa~g~p~i~l 286 (348)
T d1pswa_ 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------H-HHHHHHHTTCCEEEE
T ss_pred HhhhcccccccccccCCccHHHHHHHHhcceeEeecCc------c-HHHHHHHcCCCEEEE
Confidence 22211 1223445543 788889999999997764 2 456799999999975
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.61 Score=31.66 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=50.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCcEE
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (470)
|||-|+ ..||. -+..||+.|.++||+|+---.... .....+...|++++.-.....+ .++|+|
T Consensus 2 ~~ihfi----GIgG~--GMs~LA~~L~~~G~~VsGSD~~~~--------~~t~~L~~~Gi~i~~gh~~~~i---~~~d~v 64 (89)
T d1j6ua1 2 MKIHFV----GIGGI--GMSAVALHEFSNGNDVYGSNIEET--------ERTAYLRKLGIPIFVPHSADNW---YDPDLV 64 (89)
T ss_dssp CEEEEE----TTTSH--HHHHHHHHHHHTTCEEEEECSSCC--------HHHHHHHHTTCCEESSCCTTSC---CCCSEE
T ss_pred cEEEEE----eECHH--HHHHHHHHHHhCCCeEEEEeCCCC--------hhHHHHHHCCCeEEeeeccccc---CCCCEE
Confidence 677776 34553 455589999999999988643321 2355678889888654333222 468999
Q ss_pred EEcccc--hhhhHHHHhhhcC
Q 012132 155 VLNTAV--AGKWLDAVLKEDV 173 (470)
Q Consensus 155 ~~~~~~--~~~~~~~~~~~~~ 173 (470)
+..+.. ....+..+...++
T Consensus 65 V~SsAI~~~npel~~A~~~gI 85 (89)
T d1j6ua1 65 IKTPAVRDDNPEIVRARMERV 85 (89)
T ss_dssp EECTTCCTTCHHHHHHHHTTC
T ss_pred EEecCcCCCCHHHHHHHHcCC
Confidence 877633 3334444444444
|
| >d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: LmbE-like superfamily: LmbE-like family: LmbE-like domain: Hypothetical protein TT1542 species: Thermus thermophilus [TaxId: 274]
Probab=90.70 E-value=0.48 Score=38.86 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=23.0
Q ss_pred ccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecC
Q 012132 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (470)
|||||+|+... +-.+..+--....+.+.|++|.+++..
T Consensus 1 m~~VLvi~aHP--DDe~lg~GGtiak~~~~G~~V~vv~~T 38 (227)
T d1uana_ 1 MLDLLVVAPHP--DDGELGCGGTLARAKAEGLSTGILDLT 38 (227)
T ss_dssp CEEEEEEESST--THHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEEEeCC--ChHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 57999998643 222222222234456789999988843
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.49 E-value=1.9 Score=29.47 Aligned_cols=84 Identities=14% Similarity=0.244 Sum_probs=50.9
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+||.|+.- ||. -+..||+.|.++||+|+---.... .....+...|+.+..-.....+ .++|
T Consensus 7 ~~~~ihfiGi----gG~--GMs~LA~~L~~~G~~VsGSD~~~~--------~~~~~L~~~Gi~v~~g~~~~~i---~~~d 69 (96)
T d1p3da1 7 RVQQIHFIGI----GGA--GMSGIAEILLNEGYQISGSDIADG--------VVTQRLAQAGAKIYIGHAEEHI---EGAS 69 (96)
T ss_dssp TCCEEEEETT----TST--THHHHHHHHHHHTCEEEEEESCCS--------HHHHHHHHTTCEEEESCCGGGG---TTCS
T ss_pred hCCEEEEEEE----CHH--HHHHHHHHHHhCCCEEEEEeCCCC--------hhhhHHHHCCCeEEECCccccC---CCCC
Confidence 4567877752 332 245689999999999987643221 2345556678887765544433 4689
Q ss_pred EEEEcccc--hhhhHHHHhhhcC
Q 012132 153 LIVLNTAV--AGKWLDAVLKEDV 173 (470)
Q Consensus 153 iV~~~~~~--~~~~~~~~~~~~~ 173 (470)
+|+..+.. ....+..+...++
T Consensus 70 ~vV~S~AI~~~npel~~A~~~gi 92 (96)
T d1p3da1 70 VVVVSSAIKDDNPELVTSKQKRI 92 (96)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTC
T ss_pred EEEECCCcCCCCHHHHHHHHcCC
Confidence 88877633 2333444444444
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.98 E-value=0.47 Score=38.15 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=44.5
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCc-hhHHHhhhhhhhhcceeeEecCC-----hhhHHhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVISAKG-----QETINTA 148 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 148 (470)
|||++++.. .......++|.+.||+|..+....+... ......+.......+++++.... .......
T Consensus 1 Mkiv~~~~~-------~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~ 73 (203)
T d2blna2 1 MKTVVFAYH-------DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (203)
T ss_dssp CEEEEEECH-------HHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH
T ss_pred CeEEEEecC-------HHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhh
Confidence 688887642 2456677888889999965553322111 11111234455566777765332 2244567
Q ss_pred cCCcEEEEcc
Q 012132 149 LKADLIVLNT 158 (470)
Q Consensus 149 ~~~DiV~~~~ 158 (470)
.+||++++..
T Consensus 74 ~~~Dlii~~g 83 (203)
T d2blna2 74 LSPDVIFSFY 83 (203)
T ss_dssp TCCSEEEEES
T ss_pred hcccceeeee
Confidence 8999998765
|
| >d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: Sulfurtransferase DsrE species: Chromatium vinosum [TaxId: 1049]
Probab=87.38 E-value=0.46 Score=35.05 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=30.8
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEec
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITI 112 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~ 112 (470)
||++++.+..|.+.. .....++|+.+.+.||+| .||..
T Consensus 1 Mk~~i~v~~~P~~~~~a~~al~fA~aal~~gh~V~~vFf~ 40 (130)
T d2hy5a1 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFY 40 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 688888877666544 688999999999999999 58863
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=1.2 Score=38.74 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=42.3
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecC-----ChhhHHhhc
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQETINTAL 149 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 149 (470)
||||++. |.+..-..|++.|.++||+|+++.......... . .........++.++... ......+..
T Consensus 1 MKiLItG------~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 72 (338)
T d1udca_ 1 MRVLVTG------GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSV-L-PVIERLGGKHPTFVEGDIRNEALMTEILHDH 72 (338)
T ss_dssp CEEEEET------TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTH-H-HHHHHHHTSCCEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEEC------CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhh-H-HHHHhhcCCCCEEEEeecCCHHHHHHHHhcc
Confidence 6777764 446788899999999999999985221111111 0 11122333456655433 223444566
Q ss_pred CCcEEE
Q 012132 150 KADLIV 155 (470)
Q Consensus 150 ~~DiV~ 155 (470)
+||+|+
T Consensus 73 ~~d~Vi 78 (338)
T d1udca_ 73 AIDTVI 78 (338)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 899874
|
| >d2d1pa1 c.114.1.1 (A:1-128) tRNA 2-thiouridine synthesizing protein D, TusD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: tRNA 2-thiouridine synthesizing protein D, TusD species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.49 Score=34.77 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=30.5
Q ss_pred cEEEEEeeccCCCch-hHHHHHHHHHHHhCCceE-EEEecC
Q 012132 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWITIQ 113 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V-~v~~~~ 113 (470)
||++++.+..|.++. ......+|+.+.++||+| .||...
T Consensus 1 Mk~~i~v~~~P~~~~~a~~A~~fA~aal~~Gh~V~~vF~~~ 41 (128)
T d2d1pa1 1 MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYR 41 (128)
T ss_dssp CEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CEEEEEEecCCCCcHHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 678888877666543 577889999999999999 487643
|
| >d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein C, TusC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: tRNA 2-thiouridine synthesizing protein C, TusC species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.45 Score=34.44 Aligned_cols=41 Identities=7% Similarity=-0.030 Sum_probs=34.0
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+|++++.+..|.++. .+-..++|..+...||+|.|+....
T Consensus 1 Mkkv~ii~~~~P~~~~~~~~al~~Ala~a~~~~~V~iff~~d 42 (119)
T d2d1pb1 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD 42 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEech
Confidence 4689999988877655 6889999999999999999987443
|
| >d2hy5b1 c.114.1.1 (B:205-336) Intracellular sulfur oxidation protein DsrF {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: Intracellular sulfur oxidation protein DsrF species: Chromatium vinosum [TaxId: 1049]
Probab=86.40 E-value=0.5 Score=34.94 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=34.5
Q ss_pred ccEEEEEeeccCCCch-hHHHHHHHHHHHhCCceEEEEecCC
Q 012132 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (470)
Q Consensus 74 ~~kIl~v~~~~~~~G~-~~~~~~l~~~L~~~G~~V~v~~~~~ 114 (470)
|+|++++.+..|.|+. .+-..+++.++...||+|.|+-...
T Consensus 1 Mkk~l~ii~~aPy~s~~a~~al~~A~aa~~~~~~v~vff~~d 42 (132)
T d2hy5b1 1 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 42 (132)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred CcEEEEEecCCCCCcHHHHHHHHHHHHHHcCCCCEEEEEech
Confidence 5799999998887655 6889999999999999999987443
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.47 E-value=1.5 Score=34.89 Aligned_cols=75 Identities=21% Similarity=0.148 Sum_probs=43.8
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCC----------hhh
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QET 144 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 144 (470)
|||+|+.+ ..+.....+.|.+.||+|..+...++..... ..+.......+++++.... ...
T Consensus 1 MkI~~~G~-------~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~--~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~ 71 (203)
T d2bw0a2 1 MKIAVIGQ-------SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKA--DPLGLEAEKDGVPVFKYSRWRAKGQALPDVVA 71 (203)
T ss_dssp CEEEEECC-------HHHHHHHHHHHHHTTCEEEEEEECCCCSSCC--CHHHHHHHHHTCCEEECSCCEETTEECHHHHH
T ss_pred CEEEEEcC-------CHHHHHHHHHHHHCCCcEEEEEcCCCcCcCC--ChhhhhHHhcCCcccccccccccccccHHHHH
Confidence 78999843 3467788888889999997544322211110 1123333455666543221 123
Q ss_pred HHhhcCCcEEEEcc
Q 012132 145 INTALKADLIVLNT 158 (470)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (470)
..+..+||++++..
T Consensus 72 ~l~~~~~Dliv~~~ 85 (203)
T d2bw0a2 72 KYQALGAELNVLPF 85 (203)
T ss_dssp HHHTTCCSEEEESS
T ss_pred HHHHhCCCceEEee
Confidence 34668999998865
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=83.43 E-value=4.7 Score=29.75 Aligned_cols=112 Identities=10% Similarity=0.143 Sum_probs=69.5
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh---------cCEEEEccCCcccccchHHHH
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---------IDVLVQNSQAWGECFGRITIE 377 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~---------aDv~v~pS~~~~E~~g~~~lE 377 (470)
|.-+++|+-+.. .....+++..++.|..-.|.....-.+..++++. -|++++=-. -.+.-|+.+++
T Consensus 2 ppk~ILiVdD~~----~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~-mP~~~G~el~~ 76 (144)
T d1i3ca_ 2 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN-LPKKDGREVLA 76 (144)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC-CSSSCHHHHHH
T ss_pred CCCEEEEEECCH----HHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECc-cccccchHHHH
Confidence 445677775541 3566677777777765455555443455555543 367775333 13445777887
Q ss_pred HHh-----cCCCEEec-CCCC---cceeeecCceeeeecCCCCChHHHHHHHHHHHh
Q 012132 378 AMA-----FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 425 (470)
Q Consensus 378 Ama-----~G~PvI~s-~~~g---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 425 (470)
.+- ..+|||.- ..+. ..+..+-|.++++..|-+ .++|.+.|..+..
T Consensus 77 ~ir~~~~~~~iPvi~lT~~~~~~~~~~a~~~Ga~~yl~KP~~--~~~L~~~i~~l~~ 131 (144)
T d1i3ca_ 77 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIES 131 (144)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 763 35787753 3332 233444578899999988 9999998877654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.85 E-value=1.5 Score=31.65 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=41.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCC--CCCchhHHHhhhhhhhhcceeeEec
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK--PSEEDEVIYSLEHKMWDRGVQVISA 139 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (470)
++++++. +...-.++|..|++.|.+|+++.... +..+......+...+.+.|++++..
T Consensus 21 ~~vvIIG-------gG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~ 80 (122)
T d1h6va2 21 GKTLVVG-------ASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 80 (122)
T ss_dssp CSEEEEC-------CSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEES
T ss_pred CeEEEEC-------CCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEEC
Confidence 4677775 33578899999999999999997432 2233445556677778888887653
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.83 E-value=3 Score=32.36 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=49.3
Q ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHhcCCCCcEEEecccCCHHHHHH--hcCEEEEccCCcccccchHHHHHHhcCCC
Q 012132 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (470)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (470)
+++.++-+.+. ..+..++.++++++++...+.. ++.++++ ..|+++..+. ...-.-.+.+|+..|++
T Consensus 24 ~~~~i~ai~d~------~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~~~iD~v~I~tp--~~~h~~~~~~~l~~g~~ 92 (184)
T d1ydwa1 24 PNATISGVASR------SLEKAKAFATANNYPESTKIHG---SYESLLEDPEIDALYVPLP--TSLHVEWAIKAAEKGKH 92 (184)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCCTTCEEES---SHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHTTTCE
T ss_pred CCCEEEEEEeC------CccccccchhccccccceeecC---cHHHhhhccccceeeeccc--chhhcchhhhhhhccce
Confidence 77887755554 3456677788888776555443 4555653 4688888776 44444568899999999
Q ss_pred EEecC
Q 012132 385 VLGTA 389 (470)
Q Consensus 385 vI~s~ 389 (470)
|++-.
T Consensus 93 v~~EK 97 (184)
T d1ydwa1 93 ILLEK 97 (184)
T ss_dssp EEECS
T ss_pred eeccc
Confidence 98753
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=82.53 E-value=0.87 Score=32.85 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=26.1
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|++|||++-.+. .....+...|.+.||+|....
T Consensus 1 M~krILiVDDd~------~~~~~l~~~L~~~g~~v~~a~ 33 (121)
T d1mvoa_ 1 MNKKILVVDDEE------SIVTLLQYNLERSGYDVITAS 33 (121)
T ss_dssp CCCEEEEECSCH------HHHHHHHHHHHHTTCEEEEES
T ss_pred CCCCEEEEECCH------HHHHHHHHHHHHCCCEEEEEC
Confidence 357899998654 567778899999999988765
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=82.12 E-value=3.5 Score=31.19 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=46.4
Q ss_pred cccEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEecCChhhHHhhcCCc
Q 012132 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (470)
Q Consensus 73 ~~~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (470)
+.+||+++.. |..+++..++..+...|.++.++++..-.................+..+......... -...|
T Consensus 2 ~g~ki~~vGD-----~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a--i~~aD 74 (161)
T d1vlva2 2 KGVKVVFMGD-----TRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEA--LAGAD 74 (161)
T ss_dssp TTCEEEEESC-----TTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHH--HTTCS
T ss_pred CCCEEEEEcC-----CccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHh--hhhhh
Confidence 3578999986 2248999999999999999999987544333333222222333333333322222221 23577
Q ss_pred EEEEcc
Q 012132 153 LIVLNT 158 (470)
Q Consensus 153 iV~~~~ 158 (470)
+|+.-.
T Consensus 75 viyt~~ 80 (161)
T d1vlva2 75 VVYTDV 80 (161)
T ss_dssp EEEECC
T ss_pred heeccc
Confidence 777643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=81.33 E-value=1.5 Score=31.36 Aligned_cols=77 Identities=9% Similarity=0.116 Sum_probs=48.0
Q ss_pred cccEEEEEeeccCC-Cch-h--HHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe----cCChhh
Q 012132 73 KSKLVLLVSHELSL-SGG-P--LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS----AKGQET 144 (470)
Q Consensus 73 ~~~kIl~v~~~~~~-~G~-~--~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (470)
..+|||++...... |-+ | -...+.+++|++.|+++.++...+....-. ....-+++. ......
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd---------~d~aD~lYfeplt~e~v~~ 73 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD---------YDTSDRLYFEPVTLEDVLE 73 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS---------TTSSSEEECCCCSHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC---------hhhcCceEEccCCHHHHHH
Confidence 35789999875433 322 3 678899999999999999987654432110 001111221 122345
Q ss_pred HHhhcCCcEEEEcc
Q 012132 145 INTALKADLIVLNT 158 (470)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (470)
+.+.++||-|+...
T Consensus 74 Ii~~E~p~~ii~~~ 87 (121)
T d1a9xa4 74 IVRIEKPKGVIVQY 87 (121)
T ss_dssp HHHHHCCSEEECSS
T ss_pred HHHHhCCCEEEeeh
Confidence 66788999998765
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.17 E-value=1.6 Score=31.63 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=48.8
Q ss_pred cccEEEEEeeccCC-Cc-hh--HHHHHHHHHHHhCCceEEEEecCCCCCchhHHHhhhhhhhhcceeeEe----cCChhh
Q 012132 73 KSKLVLLVSHELSL-SG-GP--LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS----AKGQET 144 (470)
Q Consensus 73 ~~~kIl~v~~~~~~-~G-~~--~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (470)
..+|||++...... |- +| -...+.+++|++.|+++.++...+...... . ...-.++. ......
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd--------~-d~aD~lYfePlt~e~v~~ 76 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTD--------P-EMADATYIEPIHWEVVRK 76 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGC--------G-GGSSEEECSCCCHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcC--------h-hhcceeeeecCCHHHHHH
Confidence 35799999976433 32 23 678899999999999998887655432110 0 01112222 223456
Q ss_pred HHhhcCCcEEEEcc
Q 012132 145 INTALKADLIVLNT 158 (470)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (470)
+.+.++||-|+...
T Consensus 77 Ii~~E~pd~il~~~ 90 (127)
T d1a9xa3 77 IIEKERPDAVLPTM 90 (127)
T ss_dssp HHHHHCCSEEECSS
T ss_pred HHHHhCcCCeEEEe
Confidence 67789999998765
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=80.15 E-value=1.5 Score=33.53 Aligned_cols=30 Identities=23% Similarity=0.068 Sum_probs=23.2
Q ss_pred cEEEEEeeccCCCchhHHHHHHHHHHHhCCceEEEEe
Q 012132 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (470)
Q Consensus 75 ~kIl~v~~~~~~~G~~~~~~~l~~~L~~~G~~V~v~~ 111 (470)
|||.|+.. ...-..+++.|.+.||+|.++.
T Consensus 1 MkI~iIG~-------G~mG~~lA~~l~~~g~~V~~~d 30 (165)
T d2f1ka2 1 MKIGVVGL-------GLIGASLAGDLRRRGHYLIGVS 30 (165)
T ss_dssp CEEEEECC-------SHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEEee-------cHHHHHHHHHHHHCCCEEEEEE
Confidence 78999852 2455668899999999998874
|