Citrus Sinensis ID: 012137

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVHRSS
ccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHcHHHccccEEEEEEEEEEccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEEccEEEEEEEEccccccEEEEEccccEEEEccccccEEEEcEEccccccEEEEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHcccccEEEEEcccccccccEEEEccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEcccccccccEEEEccccccccccccEEEEEEEEEcccccccccEEEEEcccccccccEEEcccccccccEEEEEEEccccEEEEcccHHHHHHHHHHHccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccEEEcHHHHccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHcccccccccccEEEcccccccccccccccEEEEEEccccccccEEEEEHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcEcccccEEEcccccccHEEcccccccccccccHccccccccccccHHHHHHHHHHHHHHcccccccEEEEEccEEccHHHHHHcccccEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEcccEEccEHEEcccccccccEEEEEHHHHHHHHHHEEHHHHHHHHHHHHccc
mssknekpqnvveltssddednvaagatrpqvnapaskattqqnvprqsaaaiassppvneapesrsfwkAGTYAANitikstpvqgsleharvhpkflhsnatshKWAFGAIAELLDNAVDevqngatfvkvdrvnimkdnspalvfiddgggmdpeSLRKCMslgystkkanktigqygngfktstmrlGADVIVFSratheskstqsiGLLSYTYLrktgqddvivpmidfdisghwaepiiyssqddwsFNLKTIlewspfaskSELLQQFEDIGPHGTKVIIYNLwmndegvyelsfdddeediclrdeansgslkklpkKVLERQSHISYRIRYSLRAYASMLYlgkfdnfkiilrgkpiqqfhiadelkfpkvisyrpqvsaplkdataeTTIGfikeapalsvsgfnvyhknrlirpfwkvtgdgslkgngvvgIHTLFVGFFLLIFFSDLHITLLDVHRSS
mssknekpqnvveltssddednvAAGAtrpqvnapaskattqqnvPRQSAaaiassppvneaPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATfvkvdrvnimkdnSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSratheskstqsiglLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRdeansgslkklpkkvlerqshisYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIkeapalsvsgFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVHRSS
MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVHRSS
*******************************************************************FWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGG*****LRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLR**************VLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDV****
*********************************************************************KA*TY*********************PKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK*****IGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHIT*L******
*****************DDEDNVAAGATRPQV*********************************RSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVHRSS
*********************************************************PVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEAN***LKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVH***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
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MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVHRSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query470 2.2.26 [Sep-21-2011]
Q8BMD7 928 MORC family CW-type zinc yes no 0.708 0.358 0.347 1e-44
Q14149 939 MORC family CW-type zinc yes no 0.691 0.346 0.367 2e-44
Q8TE76 937 MORC family CW-type zinc no no 0.691 0.346 0.349 5e-44
Q9WVL5 950 MORC family CW-type zinc no no 0.548 0.271 0.352 9e-36
Q86VD1 984 MORC family CW-type zinc no no 0.559 0.267 0.339 6e-35
Q9Y6X9 1032 MORC family CW-type zinc no no 0.561 0.255 0.310 3e-33
Q69ZX6 1030 MORC family CW-type zinc no no 0.561 0.256 0.307 7e-33
Q8C5W4 1022 MORC family CW-type zinc no no 0.561 0.258 0.294 3e-30
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function desciption
 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 194/371 (52%), Gaps = 38/371 (10%)

Query: 82  STPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVD-EVQNGATFVKVDRVNIMK 140
           S P    +  + + P++L SN++SH   F AIAELLDNAVD +V     F+ V+ V    
Sbjct: 23  SVPQAFRIRLSTMSPRYLQSNSSSHTRPFSAIAELLDNAVDPDVSARTVFIDVEEVK--- 79

Query: 141 DNSPALVFIDDGGGMDPESLRKCMSLGYS---TKKANKTIGQYGNGFKTSTMRLGADVIV 197
              P L F DDG GM P  L + +S G++    KK+ + IG +GNGFK+ +MRLG D +V
Sbjct: 80  -KKPCLTFTDDGCGMTPHKLHRMLSFGFTDKVIKKSQRPIGVFGNGFKSGSMRLGKDALV 138

Query: 198 FSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLK 257
           F++    + +T ++GLLS TYL       VIVP++ F       + +I +  +D   +L+
Sbjct: 139 FTK----NGNTLAVGLLSQTYLECIQAQAVIVPIVPF---SQQNKKMIVT--EDSLPSLE 189

Query: 258 TILEWSPFASKSELLQQFEDI-GPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRD-EA 315
            IL +S F  + +LL QF+ I G  GT+V+I+N+  N +G  EL FD D+ DI + D +A
Sbjct: 190 AILNYSIFNCEKDLLSQFDAIPGKKGTRVLIWNIRRNKDGKSELDFDTDQYDILVSDFDA 249

Query: 316 NSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADEL 375
               +  +  ++ E +        YSLRA+ S+LY+      KI LR K +    IA  L
Sbjct: 250 EEKEIGGVTSELPETE--------YSLRAFCSILYMKP--RMKIFLRQKKVTTQMIAKSL 299

Query: 376 KFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGD--- 432
              +   Y+P  +    +     T GF       +  G  +YH NRLI+ F K       
Sbjct: 300 ANVEYDIYKPTST----NKQVRITFGF--SCKYHNQFGVMMYHNNRLIKAFEKAGCQLKP 353

Query: 433 GSLKGNGVVGI 443
              +G GV+G+
Sbjct: 354 TCGEGVGVIGV 364

Mus musculus (taxid: 10090)
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
359476856 653 PREDICTED: MORC family CW-type zinc fing 0.917 0.660 0.740 0.0
297735065 641 unnamed protein product [Vitis vinifera] 0.897 0.658 0.746 0.0
255585977561 zinc finger protein, putative [Ricinus c 0.917 0.768 0.721 0.0
224134194 627 predicted protein [Populus trichocarpa] 0.836 0.626 0.767 1e-174
449457622550 PREDICTED: MORC family CW-type zinc fing 0.910 0.778 0.690 1e-174
449500046516 PREDICTED: MORC family CW-type zinc fing 0.844 0.769 0.705 1e-167
30690622 626 histidine kinase-like ATPase domain-cont 0.891 0.669 0.644 1e-164
27754645 626 unknown protein [Arabidopsis thaliana] 0.891 0.669 0.641 1e-163
297798278 623 hypothetical protein ARALYDRAFT_491004 [ 0.829 0.626 0.699 1e-163
297798276 631 predicted protein [Arabidopsis lyrata su 0.834 0.621 0.700 1e-161
>gi|359476856|ref|XP_002267687.2| PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/444 (74%), Positives = 371/444 (83%), Gaps = 13/444 (2%)

Query: 1   MSSKNEKP-QNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPV 59
           MS K EK   +VVE+ SSDDE  V        V   +++      V +Q+   +   PP 
Sbjct: 4   MSLKPEKEGMDVVEIASSDDEGGVG-------VERRSNQQVQTDQVGQQTVVPL---PPA 53

Query: 60  NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDN 119
            E P SRSFWKAG Y  N   K TP    LEHARVHPKFLHSNATSHKWAFGAIAELLDN
Sbjct: 54  -EPPLSRSFWKAGAYD-NTPSKLTPAPDQLEHARVHPKFLHSNATSHKWAFGAIAELLDN 111

Query: 120 AVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179
           AVDE+ NGATFVK+DR++  KDNSPAL+F DDGGGMDPES+RKCMSLGYS+KK+N TIGQ
Sbjct: 112 AVDEICNGATFVKLDRIDNRKDNSPALLFQDDGGGMDPESIRKCMSLGYSSKKSNTTIGQ 171

Query: 180 YGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGH 239
           YGNGFKTSTMRLGADVIVFSRA+  S++TQSIGLLSYT+LR+TGQDDVIVPM+DFDIS H
Sbjct: 172 YGNGFKTSTMRLGADVIVFSRASRTSRATQSIGLLSYTFLRRTGQDDVIVPMVDFDISDH 231

Query: 240 WAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYE 299
           WAEPIIYSS++DWS NLKTILEWSPFASK EL+QQFEDIGPHGTK+IIYNLW+NDEG++E
Sbjct: 232 WAEPIIYSSKEDWSTNLKTILEWSPFASKEELMQQFEDIGPHGTKIIIYNLWLNDEGIFE 291

Query: 300 LSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKI 359
           L+FDDD+EDI LRDEAN GSL K+PKKV E QSHISY IRYSLRAYAS+LYL KF NF+I
Sbjct: 292 LNFDDDDEDIRLRDEANRGSLSKVPKKVAELQSHISYCIRYSLRAYASILYLRKFTNFQI 351

Query: 360 ILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHK 419
           ILRGKP+QQF+IADELK+PKV+ YRPQ +  LK+A+ ETTIGFIKEAPAL VSGFNVYHK
Sbjct: 352 ILRGKPVQQFNIADELKYPKVVIYRPQHNTALKEASMETTIGFIKEAPALGVSGFNVYHK 411

Query: 420 NRLIRPFWKVTGDGSLKGNGVVGI 443
           NRLIRPFWKVT DGS KGNGVVG+
Sbjct: 412 NRLIRPFWKVTSDGSSKGNGVVGV 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297735065|emb|CBI17427.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255585977|ref|XP_002533659.1| zinc finger protein, putative [Ricinus communis] gi|223526454|gb|EEF28730.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224134194|ref|XP_002327779.1| predicted protein [Populus trichocarpa] gi|222836864|gb|EEE75257.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457622|ref|XP_004146547.1| PREDICTED: MORC family CW-type zinc finger protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449500046|ref|XP_004160988.1| PREDICTED: MORC family CW-type zinc finger protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30690622|ref|NP_195351.2| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gi|58331775|gb|AAW70385.1| At4g36280 [Arabidopsis thaliana] gi|332661243|gb|AEE86643.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|27754645|gb|AAO22768.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798278|ref|XP_002867023.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp. lyrata] gi|297312859|gb|EFH43282.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297798276|ref|XP_002867022.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312858|gb|EFH43281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query470
TAIR|locus:2122254 626 CRH1 "CRT1 Homologue 1" [Arabi 0.838 0.629 0.69 3.5e-152
TAIR|locus:2122264 635 CRT1 "compromised recognition 0.919 0.680 0.644 2.5e-145
TAIR|locus:2011226 663 DMS11 "DEFECTIVE IN MERISTEM S 0.880 0.624 0.507 2.3e-110
TAIR|locus:2163320 819 AT5G50780 [Arabidopsis thalian 0.770 0.442 0.483 3.9e-102
TAIR|locus:2117358 707 AT4G24970 [Arabidopsis thalian 0.797 0.530 0.501 1.4e-97
TAIR|locus:2179837 708 AT5G13130 [Arabidopsis thalian 0.876 0.581 0.449 2.1e-91
TAIR|locus:2122244 486 AT4G36270 "AT4G36270" [Arabido 0.589 0.569 0.533 6.7e-72
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.719 0.365 0.370 6.5e-45
UNIPROTKB|F1MFY1 960 MORC3 "Uncharacterized protein 0.736 0.360 0.353 7.3e-45
ZFIN|ZDB-GENE-060929-544422 zgc:152774 "zgc:152774" [Danio 0.695 0.774 0.355 6.4e-44
TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1456 (517.6 bits), Expect = 3.5e-152, Sum P(2) = 3.5e-152
 Identities = 276/400 (69%), Positives = 327/400 (81%)

Query:    47 RQSAAAIASSPPV--NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNAT 104
             R+SA+ IA +  +   E  E RSFWKAG Y     + +    G LEHARVHP+FLHSNAT
Sbjct:    30 RESASTIAGAATMAPRETLECRSFWKAGDYFVIPNVVTPTAPGMLEHARVHPRFLHSNAT 89

Query:   105 SHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164
             SHKWAFGAIAELLDNAVDE+QNGATFVK+D++NI+KDNSPALVF DDGGGMDP  LRKCM
Sbjct:    90 SHKWAFGAIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALVFQDDGGGMDPAGLRKCM 149

Query:   165 SLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224
             SLGYS+KK+N TIGQYGNGFKTSTMRLGAD IVFSR+T    STQS+G+LSYT+LRKTGQ
Sbjct:   150 SLGYSSKKSNTTIGQYGNGFKTSTMRLGADAIVFSRSTRGGTSTQSVGILSYTFLRKTGQ 209

Query:   225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTK 284
             DDV VPMID DIS    +PIIY S +DW+ NL+ +L+WSPF+++ ELLQQFED+G HGTK
Sbjct:   210 DDVTVPMIDIDISKERPQPIIYGSPEDWAANLEILLKWSPFSTEDELLQQFEDVGTHGTK 269

Query:   285 VIIYNLWMNDEGVYELSFDDDEEDICLRDEA-NSGSLKKLPKKVLERQSHISYRIRYSLR 343
             VIIYNLW+NDEG+YELSFDDDEEDI LRDE+ N G  K+L  K+LE +SHISY +RYSLR
Sbjct:   270 VIIYNLWLNDEGIYELSFDDDEEDIRLRDESVNDG--KRLHHKILELRSHISYHLRYSLR 327

Query:   344 AYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFI 403
             AYASMLYL KF NFKII+RG P++QF+IAD  +FP++I Y+P  +A  + A+ E  IGF+
Sbjct:   328 AYASMLYLKKFKNFKIIIRGIPVEQFNIADGFRFPEIIKYKPH-TATTEQASTEIKIGFV 386

Query:   404 KEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGI 443
             KEAP L++ GFNVYHKNRLIRPFWKVT  G   G+GVVG+
Sbjct:   387 KEAPKLAICGFNVYHKNRLIRPFWKVTMGGDSTGHGVVGV 426
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036855001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (650 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 8e-19
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 1e-07
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 8e-05
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 1e-04
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 81.9 bits (203), Expect = 8e-19
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)

Query: 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPA-LVFIDDGGGMDPESLRKCMSLGY 168
             AIAEL+DN++D     AT VK+    I  D     +   D+GGGM  E LR  + LG 
Sbjct: 4   EDAIAELIDNSIDA---DATNVKIS---IDPDRGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 169 STKKA---NKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQD 225
           S+K+    + T+G+ G G K +++ LG  + V S+   ES +      L    + K G+ 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLT----LDLDDIDKEGEW 113

Query: 226 DVIVPMID 233
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 470
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 100.0
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.72
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.69
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.67
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.63
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 99.6
PRK05218 613 heat shock protein 90; Provisional 99.48
COG3290537 CitA Signal transduction histidine kinase regulati 99.24
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 99.2
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 99.17
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.15
PRK14083 601 HSP90 family protein; Provisional 99.09
PTZ00130 814 heat shock protein 90; Provisional 98.99
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.98
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 98.97
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.91
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.78
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.73
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 98.72
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.64
PRK04184 535 DNA topoisomerase VI subunit B; Validated 98.63
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.56
PRK09303380 adaptive-response sensory kinase; Validated 98.5
PRK10604433 sensor protein RstB; Provisional 98.48
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 98.45
PRK05644 638 gyrB DNA gyrase subunit B; Validated 98.44
PRK11006430 phoR phosphate regulon sensor protein; Provisional 98.42
PRK10364457 sensor protein ZraS; Provisional 98.41
KOG0019 656 consensus Molecular chaperone (HSP90 family) [Post 98.38
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 98.36
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 98.33
PRK09467435 envZ osmolarity sensor protein; Provisional 98.32
PRK09470461 cpxA two-component sensor protein; Provisional 98.31
PRK10549466 signal transduction histidine-protein kinase BaeS; 98.31
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 98.31
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 98.31
PRK11086542 sensory histidine kinase DcuS; Provisional 98.31
COG4191603 Signal transduction histidine kinase regulating C4 98.3
COG0642336 BaeS Signal transduction histidine kinase [Signal 98.28
PRK10755356 sensor protein BasS/PmrB; Provisional 98.25
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 98.24
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 98.23
PRK10815485 sensor protein PhoQ; Provisional 98.22
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 98.2
PRK11100475 sensory histidine kinase CreC; Provisional 98.2
PRK13837828 two-component VirA-like sensor kinase; Provisional 98.17
PRK10618894 phosphotransfer intermediate protein in two-compon 98.16
PRK11091779 aerobic respiration control sensor protein ArcB; P 98.11
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 98.11
PRK15347921 two component system sensor kinase SsrA; Provision 98.1
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 98.06
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 98.06
PRK11360607 sensory histidine kinase AtoS; Provisional 98.06
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 98.06
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 98.06
PRK10490895 sensor protein KdpD; Provisional 98.05
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 98.04
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 98.03
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 98.03
PRK10337449 sensor protein QseC; Provisional 98.01
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 97.99
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 97.99
PRK10841924 hybrid sensory kinase in two-component regulatory 97.95
PRK09835482 sensor kinase CusS; Provisional 97.94
PRK10547670 chemotaxis protein CheA; Provisional 97.91
PRK099591197 hybrid sensory histidine kinase in two-component r 97.9
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.86
PRK13557540 histidine kinase; Provisional 97.81
PLN03237 1465 DNA topoisomerase 2; Provisional 97.81
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.77
COG3852363 NtrB Signal transduction histidine kinase, nitroge 97.66
COG0643716 CheA Chemotaxis protein histidine kinase and relat 97.57
COG5002459 VicK Signal transduction histidine kinase [Signal 97.47
COG4585365 Signal transduction histidine kinase [Signal trans 97.34
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 97.33
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 97.32
PTZ00109 903 DNA gyrase subunit b; Provisional 97.22
COG5000712 NtrY Signal transduction histidine kinase involved 97.2
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 97.15
PRK03660146 anti-sigma F factor; Provisional 97.07
PRK04069161 serine-protein kinase RsbW; Provisional 97.07
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 97.06
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 97.06
PLN03128 1135 DNA topoisomerase 2; Provisional 97.03
PRK11644495 sensory histidine kinase UhpB; Provisional 96.99
COG3850574 NarQ Signal transduction histidine kinase, nitrate 96.96
PRK13560807 hypothetical protein; Provisional 96.91
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 96.84
COG4192673 Signal transduction histidine kinase regulating ph 96.79
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 96.58
COG4251750 Bacteriophytochrome (light-regulated signal transd 96.55
COG2972456 Predicted signal transduction protein with a C-ter 96.41
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 96.21
COG3851497 UhpB Signal transduction histidine kinase, glucose 95.83
PRK13559361 hypothetical protein; Provisional 94.96
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 94.31
PF14501100 HATPase_c_5: GHKL domain 93.79
COG3920221 Signal transduction histidine kinase [Signal trans 93.4
COG4564459 Signal transduction histidine kinase [Signal trans 92.51
COG3275557 LytS Putative regulator of cell autolysis [Signal 86.29
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-53  Score=458.93  Aligned_cols=436  Identities=44%  Similarity=0.607  Sum_probs=362.4

Q ss_pred             CCCceeEEccCCCCCCCeecccCCCcccCcCcccccCCCCCCcccccCCCCCCCCC-------------------Cchhh
Q 012137            6 EKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNE-------------------APESR   66 (470)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~   66 (470)
                      ..+-++++.++|-+.+.+-.+.....+...++.....|...+  .++.++++.|++                   +.+|+
T Consensus        27 ~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e--~~~~~~vvvP~~t~~~~~~~~~~~k~~~~l~~~~c~  104 (775)
T KOG1845|consen   27 YGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHE--SEADDAVVVPCPTFNPRTREIVTEKFAFSLEAIYCR  104 (775)
T ss_pred             cccccccCcccccccccCcccceeeccccccceeeeeccccc--ccccccceecccccccccccccccccccccchhhhc
Confidence            456678888777444444333333344455555555554443  233344444443                   45599


Q ss_pred             hhhhccccCcccccccCCCcCcccccccCcccccccccchhhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCC-Cce
Q 012137           67 SFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDN-SPA  145 (470)
Q Consensus        67 ~~~kA~~~~~~~~~~~~~~~~~~~~l~~~p~fL~s~~tsH~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~-~~~  145 (470)
                      ||||||+|.+..........|...++.+||+|||+|+|+|+|.++|+++|||||+|...++++.+.|+......+. ...
T Consensus       105 sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a  184 (775)
T KOG1845|consen  105 SFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRA  184 (775)
T ss_pred             CcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccccccee
Confidence            9999999999444333444556799999999999999999999999999999999999999999888866543333 445


Q ss_pred             EEEE-----eCCCCCCHHHHHHhhhcCcccccC-CCCCCcccccccccccccCCeEEEEee--eCCCCCcceeeeeeeeE
Q 012137          146 LVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIGLLSYT  217 (470)
Q Consensus       146 i~I~-----DnG~GM~~e~l~~~~~~G~S~K~~-~~~iG~fGiGlK~As~~lg~~v~V~Sr--~~~~~~~~~svgllS~t  217 (470)
                      ++|+     |||+||.++-+.++|.+|++.|.+ ..++|+||+|||++.|++|+++.|++|  ...+...++++|+|||+
T Consensus       185 ~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~t  264 (775)
T KOG1845|consen  185 LVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYT  264 (775)
T ss_pred             EEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEe
Confidence            5555     779999999999999999999887 789999999999999999999999999  44566789999999999


Q ss_pred             eeccCCCCCeEeee----eeccCCCcccccccccCccccchhhhh-----hhccCCCCChHHHHHh--------------
Q 012137          218 YLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ--------------  274 (470)
Q Consensus       218 fl~~~~~~di~vP~----~d~d~~~~~~~~ii~~~~~~w~~~l~~-----Il~~Spf~~e~el~~q--------------  274 (470)
                      |++.++.+|++|||    .+++...+.+.++++.+..+|..++.+     +++|+||.++.+++.|              
T Consensus       265 fL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~  344 (775)
T KOG1845|consen  265 FLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH  344 (775)
T ss_pred             eeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence            99999999999999    888888888889998889999999888     9999999999999999              


Q ss_pred             -hcccCCCeeEEEEecc--ccccCCcccccCCCCchhhhccccccccccccchhhhhhhhccchhhhhhhHHhhhhhhhc
Q 012137          275 -FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYL  351 (470)
Q Consensus       275 -f~~i~~~GT~IiI~nL--w~~~~g~~eldf~~d~~Di~i~~~~~~~~~~~~~~~~~~~~~hi~~~~~~SLRaY~siLYL  351 (470)
                       ++.+..+||.+|+||+  |.+.+|.+|++|..++++|..                         .+-++++.|.+|||+
T Consensus       345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~sil~~  399 (775)
T KOG1845|consen  345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEASILLL  399 (775)
T ss_pred             hhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcccccch
Confidence             8888899999999999  999999999999988776641                         345677899999999


Q ss_pred             CCCCcEEEEEcCeeecccccccccCCCceeccCcccCCCCC---cceEEEEEEEecCCC-CCCCceEEEEEcCeeec---
Q 012137          352 GKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLK---DATAETTIGFIKEAP-ALSVSGFNVYHKNRLIR---  424 (470)
Q Consensus       352 ~~~~~~~I~lnG~~V~~~~i~~~l~~~~~~~ykp~~~~~~~---~~~v~i~~Gf~~~~~-~~~~~G~~vY~nnRLI~---  424 (470)
                      ..+.+|++++.|+.+.++.+.+..+..+...|.|+..+...   ........||.+.++ +.+.++++|||.+|||.   
T Consensus       400 ~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~  479 (775)
T KOG1845|consen  400 TRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGC  479 (775)
T ss_pred             hccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhcc
Confidence            99999999999999999999999999999999999866421   233344568887774 78888999999999999   


Q ss_pred             -ccccccccCCCccceEEeeeee-ee-------cchhhhhHHHHHHHHhhhcc
Q 012137          425 -PFWKVTGDGSLKGNGVVGIHTL-FV-------GFFLLIFFSDLHITLLDVHR  468 (470)
Q Consensus       425 -~~~kv~~~~~~~g~GviGVle~-f~-------~~~~~~~~~~~~~~~~~~~~  468 (470)
                       |+||.++...+.++++++++++ |+       |+++++|++++|+++.++.+
T Consensus       480 ~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~  532 (775)
T KOG1845|consen  480 RPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLN  532 (775)
T ss_pred             cceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhccc
Confidence             9999999999999999999999 88       99999999999999987754

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query470
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 6e-08
 Identities = 68/457 (14%), Positives = 137/457 (29%), Gaps = 118/457 (25%)

Query: 50  AAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWA 109
           A  +  S  V    + + FW       N+   ++P +  LE      + L      +  +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW------LNLKNCNSP-ETVLEML----QKLLYQIDPNWTS 215

Query: 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR----KCMS 165
               +  +   +  +Q      ++ R+   K     L+ + +    + ++       C  
Sbjct: 216 RSDHSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI 268

Query: 166 LGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQD 225
           L  +T+   K +  + +   T+ + L    +     T +    +   LL   YL    QD
Sbjct: 269 L-LTTR--FKQVTDFLSAATTTHISLDHHSMTL---TPD----EVKSLLL-KYLDCRPQD 317

Query: 226 -----DVIVPMIDFDISGHWAEPIIYSSQ-DDWSF----NLKTILEWS-----PFASKSE 270
                    P     +S          +  D+W       L TI+E S     P    +E
Sbjct: 318 LPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP----AE 370

Query: 271 LLQQFEDIG--PHGTKV---IIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPK 325
             + F+ +   P    +   ++  +W +           D   +          + KL K
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KSDVMVV----------VNKLHK 413

Query: 326 K-VLERQSH-ISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVI-S 382
             ++E+Q    +  I  S+     +    K +N             H         ++  
Sbjct: 414 YSLVEKQPKESTISI-PSI----YLELKVKLEN---------EYALHR-------SIVDH 452

Query: 383 YRPQVSAPLKDATAETT-------IGF-IKEA-PALSVSGF-NVYHKNRLIRPFWKVTGD 432
           Y    +    D             IG  +K       ++ F  V+   R +    K+  D
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRHD 510

Query: 433 GSLKGNGVVGIHTLFVGFFLLIFFSDLHITLLDVHRS 469
            +        ++TL      L F+   +I   D    
Sbjct: 511 STAWNASGSILNTLQQ----LKFYKP-YICDNDPKYE 542

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.69
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.66
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.65
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.63
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 99.47
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.45
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 99.42
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.35
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.35
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.32
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.31
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.31
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.29
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.29
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.28
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.27
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.17
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.16
4duh_A220 DNA gyrase subunit B; structure-based drug design, 99.06
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 99.01
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 98.84
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 98.84
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.75
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 98.74
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 98.66
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.64
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 98.62
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 98.61
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.6
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 98.6
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.58
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 98.57
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 98.57
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 98.56
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 98.56
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 98.52
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.51
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 98.51
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 98.48
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 98.48
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.48
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 98.46
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.45
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 98.43
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 98.41
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 98.41
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 98.36
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 98.28
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 98.13
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 98.13
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 98.04
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 98.01
3zxo_A129 Redox sensor histidine kinase response regulator; 97.94
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 97.93
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 97.92
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 97.86
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 97.75
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 97.29
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 94.97
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
Probab=99.69  E-value=8.8e-17  Score=163.31  Aligned_cols=90  Identities=20%  Similarity=0.336  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHchhhhhhCCCceEEEEEEEecCCCCceEEEEeCCCCCCHHHHHHhhhcCcccccC-------CCCCCc
Q 012137          107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ  179 (470)
Q Consensus       107 ~w~f~AIaELIDNAiDA~~~gA~~V~I~i~~~~~~~~~~i~I~DnG~GM~~e~l~~~~~~G~S~K~~-------~~~iG~  179 (470)
                      ..|.++|.|||+||+||   +|+.|.|.+..   ++...|+|.|||.||+++++..+|..++++|..       ...+|.
T Consensus        23 ~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~   96 (333)
T 1b63_A           23 ERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGF   96 (333)
T ss_dssp             SSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCC
T ss_pred             hCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCc
Confidence            46778999999999999   78999998852   345789999999999999999999866666653       247899


Q ss_pred             ccccccccccccCCeEEEEeeeCCC
Q 012137          180 YGNGFKTSTMRLGADVIVFSRATHE  204 (470)
Q Consensus       180 fGiGlK~As~~lg~~v~V~Sr~~~~  204 (470)
                      +|+||.+  ....++++|.|++.++
T Consensus        97 ~G~gl~s--i~~vs~l~v~s~~~~~  119 (333)
T 1b63_A           97 RGEALAS--ISSVSRLTLTSRTAEQ  119 (333)
T ss_dssp             SSCHHHH--HHTTSEEEEEEECTTC
T ss_pred             cccchhh--hhcCCcEEEEEecCCC
Confidence            9999854  3334489999998653
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 470
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 8e-04
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 112 AIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK 171
            + EL++N++D    GAT + +D   I +  +  +   D+G G+  + L   ++   ++K
Sbjct: 28  VVKELVENSLDA---GATRIDID---IERGGAKLIRIRDNGCGIKKDELALALARHATSK 81

Query: 172 KANKTIGQY-----GNGFKTSTMRLGADVIVFSRATHESKSTQ 209
            A+    +        G   +++   + + + SR   + ++ Q
Sbjct: 82  IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query470
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.63
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.51
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.31
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.26
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.26
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.18
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 99.04
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 98.99
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 98.97
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.96
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.82
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.81
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 98.56
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 98.46
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 98.16
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 98.13
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 98.09
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.8
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 97.79
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.21
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure