Citrus Sinensis ID: 012138
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNK4 | 475 | Ornithine aminotransferas | yes | no | 0.987 | 0.976 | 0.772 | 0.0 | |
| Q10G56 | 473 | Ornithine aminotransferas | yes | no | 0.919 | 0.913 | 0.731 | 0.0 | |
| Q54JP5 | 416 | Probable ornithine aminot | yes | no | 0.853 | 0.963 | 0.553 | 1e-139 | |
| Q9P7L5 | 438 | Ornithine aminotransferas | yes | no | 0.880 | 0.945 | 0.545 | 1e-133 | |
| Q92413 | 454 | Ornithine aminotransferas | yes | no | 0.882 | 0.914 | 0.521 | 1e-132 | |
| P07991 | 424 | Ornithine aminotransferas | yes | no | 0.874 | 0.969 | 0.540 | 1e-127 | |
| Q9VW26 | 431 | Ornithine aminotransferas | yes | no | 0.865 | 0.944 | 0.509 | 1e-125 | |
| C4L2E7 | 400 | Ornithine aminotransferas | yes | no | 0.836 | 0.982 | 0.543 | 1e-125 | |
| P49724 | 432 | Ornithine aminotransferas | N/A | no | 0.848 | 0.923 | 0.529 | 1e-124 | |
| P60299 | 396 | Ornithine aminotransferas | yes | no | 0.840 | 0.997 | 0.541 | 1e-122 |
| >sp|Q9FNK4|OAT_ARATH Ornithine aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=DELTA-OAT PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/471 (77%), Positives = 410/471 (87%), Gaps = 7/471 (1%)
Query: 6 ATRRNLHCLLSRVCR---KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFS 62
TRR L+ + R +RSYG PQ + SSSQ+L+ LE E+SAHNYHPVP+VFS
Sbjct: 4 TTRRLLYYVSKRFSTAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAHNYHPVPVVFS 63
Query: 63 QAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVF 122
+A GS+IWDPEG +Y+DFL+AYSAVNQGHCHPKIMKALQEQ EKLTLSSRAFYNDKFPVF
Sbjct: 64 RANGSTIWDPEGKRYIDFLAAYSAVNQGHCHPKIMKALQEQVEKLTLSSRAFYNDKFPVF 123
Query: 123 AERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
AERLT+MFGYDMVLPMNTGAEGVETALKLARKWG+ KK DEAIIVSCCGCFHGRTLA
Sbjct: 124 AERLTNMFGYDMVLPMNTGAEGVETALKLARKWGHEKKNIPKDEAIIVSCCGCFHGRTLA 183
Query: 183 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242
+SMSCDN+A RGFGPLLPG+LKVDFGD +LEKIFKE GD+IAGFLFEPIQGEAGVIIP
Sbjct: 184 IVSMSCDNDATRGFGPLLPGNLKVDFGDADSLEKIFKEKGDRIAGFLFEPIQGEAGVIIP 243
Query: 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPV 302
PDGYLKAVR+LC+KYN+LMIADE+QSGLARSG+MLA DWEE+RPDMVILGKALGGGVIPV
Sbjct: 244 PDGYLKAVRELCTKYNVLMIADEVQSGLARSGKMLACDWEEIRPDMVILGKALGGGVIPV 303
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
SAVLADK+VML I+PG+HGSTFGGNPLASAVA+ASLDVI +EKL ERSA LGEELR L
Sbjct: 304 SAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMASLDVIVEEKLVERSASLGEELRIQLN 363
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTP 421
+I++QFP Y+KEVRGRGLFNA+EF+ +L PVSAYDICL +KERG+LAKPTH+TIVRLTP
Sbjct: 364 EIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSAYDICLSLKERGVLAKPTHNTIVRLTP 423
Query: 422 PLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPA---TPCHRCGRNLY 469
PLSISS+EL++GS+ALHDVLELDLP + K P T C RCGRNLY
Sbjct: 424 PLSISSDELRDGSEALHDVLELDLPNLLKINSGKTPVSHITECDRCGRNLY 474
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Mediates degradation of arginine for nitrogen recycling. Plays a role in non-host disease resistance by regulating pyrroline-5-carboxylate metabolism-induced hypersensitive response. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 3 |
| >sp|Q10G56|OAT_ORYSJ Ornithine aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=OAT PE=2 SV=1 | Back alignment and function description |
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Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/436 (73%), Positives = 375/436 (86%), Gaps = 4/436 (0%)
Query: 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIM 97
+S++L+ +E E SAHNYHP+P+VFS+ +GS I DPEGNKY+DFLSAYSAVNQGHCHPK++
Sbjct: 38 TSEELMRMERERSAHNYHPIPVVFSKGEGSHILDPEGNKYIDFLSAYSAVNQGHCHPKVL 97
Query: 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 157
+AL+EQAE+LTLSSRAFYNDKFP+FAE LTSMFGY+M+LPMNTGAEGVETA+KL RKWGY
Sbjct: 98 RALKEQAERLTLSSRAFYNDKFPIFAEYLTSMFGYEMMLPMNTGAEGVETAIKLVRKWGY 157
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 217
KKK +EA+IVSCCGCFHGRTL ISMSCDN+A RGFGPL+PGHLKVDFGD LEKI
Sbjct: 158 EKKKIPKNEALIVSCCGCFHGRTLGVISMSCDNDATRGFGPLVPGHLKVDFGDTDGLEKI 217
Query: 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
FK+ G++I GFLFEPIQGEAGVIIPPDGYLKAVRDLCS++NILMIADEIQ+G+AR+G+ML
Sbjct: 218 FKDHGERICGFLFEPIQGEAGVIIPPDGYLKAVRDLCSRHNILMIADEIQTGIARTGKML 277
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 337
A DWE +RPD+VILGKALG GV+PVSAVLADK++MLCI+PGEHGSTFGGNPLASAVA+AS
Sbjct: 278 ACDWENIRPDVVILGKALGAGVVPVSAVLADKDIMLCIKPGEHGSTFGGNPLASAVAVAS 337
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAY 396
L V+ DE L ER+A LG+E R L K+QQ+FP ++EVRGRGL NAV+ AL P SAY
Sbjct: 338 LKVVTDEGLVERAAKLGQEFRDQLQKVQQRFPQIIREVRGRGLLNAVDLSNEALSPASAY 397
Query: 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR---KPKP 453
DIC+K+KERG+LAKPTHDTI+RL PPLSIS EL E SKA DVLE DLP+++ K
Sbjct: 398 DICIKLKERGVLAKPTHDTIIRLAPPLSISPEELAEASKAFSDVLEHDLPQLQKQIKKTE 457
Query: 454 ADAPATPCHRCGRNLY 469
+ A C RCGR+LY
Sbjct: 458 SAAEKQSCDRCGRDLY 473
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Confers drought and oxidative stress tolerance mainly through enhancing ROS-scavenging capacity and Pro pre-accumulation. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|Q54JP5|OAT_DICDI Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1 | Back alignment and function description |
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Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 224/405 (55%), Positives = 304/405 (75%), Gaps = 4/405 (0%)
Query: 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIM 97
+S++LI +E E++AH YHP+P+VF +A G +WD E +Y DFLSAYSAVNQGH HPKI+
Sbjct: 12 TSKELIEMESEFAAHTYHPIPVVFKKASGVHVWDVEEKQYFDFLSAYSAVNQGHSHPKIV 71
Query: 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 157
AL QA+K LSSRAFYN+ FP +A+ +T FGY+MVLPMNTGAE VET++KLAR+WGY
Sbjct: 72 SALITQAQKCALSSRAFYNEVFPQYAKYITEYFGYEMVLPMNTGAEAVETSIKLARRWGY 131
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 217
VKK + D+AI++SC GCFHGRT+ ISMS D + +GPL+ G +K+D+ LE++
Sbjct: 132 VKKGIAEDQAIVISCKGCFHGRTIGVISMSDDPSSYNKYGPLMNGIIKIDYNSTQQLEEV 191
Query: 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
+ D++ GF+ EPIQGEAGV++P +GYLK +LC KYN+L++ADEIQ+GL R+GRML
Sbjct: 192 LSQHADRVCGFIVEPIQGEAGVVVPDEGYLKKCYELCKKYNVLLVADEIQTGLCRTGRML 251
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 337
SDW+ ++PD+V+LGKA+ GG++P+SAVL K+VML I+PGEHGST+GG+PLASAVA+A+
Sbjct: 252 CSDWDGIKPDLVLLGKAISGGLLPISAVLGGKDVMLTIKPGEHGSTYGGSPLASAVAMAA 311
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397
LDV+RDE LAE + LGE R + I ++ VRG+GL NA+ D VSA+D
Sbjct: 312 LDVLRDENLAENAQKLGEHFRAQISNINHP---AIQLVRGKGLLNAIVIDPN-FTVSAWD 367
Query: 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
IC+K E G+LAKPTHD I+RL PPL+I+ ++ + + V +
Sbjct: 368 ICIKFAENGLLAKPTHDNIIRLAPPLTITLEQIDQCVSIIKKVFD 412
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Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|Q9P7L5|OAT_SCHPO Ornithine aminotransferase car2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=car2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/431 (54%), Positives = 315/431 (73%), Gaps = 17/431 (3%)
Query: 35 SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHP 94
++ S++Q+ LE EY+AHNYHP+P+ FS+AKG+ +WDPEG +YLDFLSAYSAVNQGHCHP
Sbjct: 9 NTFSTEQIEVLENEYAAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHP 68
Query: 95 KIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARK 154
KI++AL EQA+++TLSSRAFYNDKF FA+ +T FGY+MV+PMNTGAE VETA KLAR
Sbjct: 69 KIIEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARL 128
Query: 155 WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-------GHLKV- 206
WGY KK DEAII+SC FHGRT+ ISMS D +A +GP LP G +V
Sbjct: 129 WGYKAKKIPTDEAIILSCVDNFHGRTMGIISMSTDPDARDNYGPYLPNVGPKISGADRVL 188
Query: 207 DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266
+ +I L+ G ++A FL EPIQGEAGV++P DGYL+ LC +N+L IADE+
Sbjct: 189 RYNNIEDLKYYLDTFGPKVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEV 248
Query: 267 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326
Q+G+AR+G+ML + V+PD+VILGKA+ GGV PVSAVL+ +E+ML +PG HGST+GG
Sbjct: 249 QTGVARTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGG 308
Query: 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386
NPL +AV+IA+L+V+++EKL ER+A LGE+ R L + + V++VRGRGL NAV
Sbjct: 309 NPLGAAVSIAALEVVKEEKLTERAAVLGEKFRTALIECKSPI---VQKVRGRGLLNAVVI 365
Query: 387 DKTALP-VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG----SKALHDVL 441
D++ +A+D+CL M+ RG+LAKPTH I+R +PPL I+ +L +G K+L+D+
Sbjct: 366 DESKTNGRTAWDLCLIMRSRGVLAKPTHGNIIRFSPPLVITEEDLMKGIEVIKKSLNDLP 425
Query: 442 ELDL-PKMRKP 451
+D+ P KP
Sbjct: 426 TIDMTPYAEKP 436
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|Q92413|OAT_EMENI Ornithine aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=otaA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/428 (52%), Positives = 311/428 (72%), Gaps = 13/428 (3%)
Query: 31 GTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG 90
T+ +SS+Q+ I E +++AHNYHP+P+VF++A+G+S+WDPEG YLDFLSAYSAVNQG
Sbjct: 10 ATAYHASSTQEAIQAENDFAAHNYHPLPVVFARAQGTSVWDPEGRHYLDFLSAYSAVNQG 69
Query: 91 HCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALK 150
HCHPK++ AL +QA +LTLSSRAFYND FP FAE +T FG+DMVLPMNTGAE VET +K
Sbjct: 70 HCHPKLVAALVDQASRLTLSSRAFYNDVFPKFAEMVTKYFGFDMVLPMNTGAEAVETGIK 129
Query: 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP-------LLPGH 203
+ARKWGY K +EAII+S FHGRT+AAIS+S D E+ +GP +PG
Sbjct: 130 IARKWGYKVKGIPENEAIILSAENNFHGRTMAAISLSSDPESRENYGPYVPNIGCTIPGT 189
Query: 204 LK-VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262
K + + D AL + F+++G +A FL EPIQGEAG+I+P D YL+ R LC ++N+L+I
Sbjct: 190 EKPITYNDKAALREAFEKAGSNLAAFLVEPIQGEAGIIVPDDDYLQLARSLCDQHNVLLI 249
Query: 263 ADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS 322
DEIQ+G+AR+G++L +W ++PDMV+LGKA+ GG+ PVS VL K+VML ++PG HGS
Sbjct: 250 CDEIQTGIARTGKLLCHEWSGIKPDMVLLGKAISGGMYPVSCVLGRKDVMLTVEPGTHGS 309
Query: 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382
T+GGNPLA AVAI +L+V+++E + ER+ LG+ R L IQ ++ VRG+GL N
Sbjct: 310 TYGGNPLACAVAIRALEVVQEENMVERAEKLGQAFRSGLEAIQNPI---IQTVRGKGLLN 366
Query: 383 AVEFDKTALP-VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
A+ D++ +A+D+C+ MKE+G+LAKPTH I+RL PPL I+ E+ + + + +
Sbjct: 367 AIVIDESKTNGHTAWDLCMLMKEKGLLAKPTHQNIIRLAPPLVITEEEIAKALEIIKAAV 426
Query: 442 ELDLPKMR 449
+LP ++
Sbjct: 427 A-ELPNLK 433
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Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P07991|OAT_YEAST Ornithine aminotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/422 (54%), Positives = 294/422 (69%), Gaps = 11/422 (2%)
Query: 33 SPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHC 92
S ++ SS+Q I E +YSAHNYHP+P+VF +AKG+ +WDPEG YLDFLSAYSAVNQGHC
Sbjct: 2 SEATLSSKQTIEWENKYSAHNYHPLPVVFHKAKGAHVWDPEGKLYLDFLSAYSAVNQGHC 61
Query: 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152
HP I+KAL EQA+ LTLSSRAF+ND + FA+ +T FG++ VLPMNTGAE VETALKLA
Sbjct: 62 HPHIIKALTEQAQTLTLSSRAFHNDVYAQFAKFVTEFFGFETVLPMNTGAEAVETALKLA 121
Query: 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLP----GHL--K 205
R+WGY+KK D+AII+ G FHGRT AIS+S D E + FGP +P GH K
Sbjct: 122 RRWGYMKKNIPQDKAIILGAEGNFHGRTFGAISLSTDYEDSKLHFGPFVPNVASGHSVHK 181
Query: 206 VDFGDITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
+ +G I + G +A + EPIQGEAG+++PP Y V LC K+N+L+I D
Sbjct: 182 IRYGHAEDFVPILESPEGKNVAAIILEPIQGEAGIVVPPADYFPKVSALCRKHNVLLIVD 241
Query: 265 EIQSGLARSGRMLASDW--EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS 322
EIQ+G+ R+G +L D E +PD+V+LGKAL GGV+PVS VL+ ++M C PG HGS
Sbjct: 242 EIQTGIGRTGELLCYDHYKAEAKPDIVLLGKALSGGVLPVSCVLSSHDIMSCFTPGSHGS 301
Query: 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382
TFGGNPLAS VAIA+L+VIRDEKL +R+A LG L +Q + + EVRG GL
Sbjct: 302 TFGGNPLASRVAIAALEVIRDEKLCQRAAQLGSSFIAQLKALQAKSNGIISEVRGMGLLT 361
Query: 383 AVEFDKT-ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
A+ D + A +A+D+CL MK+ G+LAKPTHD I+RL PPL IS +LQ G + + +
Sbjct: 362 AIVIDPSKANGKTAWDLCLLMKDHGLLAKPTHDHIIRLAPPLVISEEDLQTGVETIAKCI 421
Query: 442 EL 443
+L
Sbjct: 422 DL 423
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|Q9VW26|OAT_DROME Ornithine aminotransferase, mitochondrial OS=Drosophila melanogaster GN=Oat PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/418 (50%), Positives = 302/418 (72%), Gaps = 11/418 (2%)
Query: 18 VCRKRSYGAQ---PQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEG 74
+ + S+ AQ Q T+ + S S+ + E +Y AHNYHP+P+ ++ +G +WD EG
Sbjct: 10 IATRMSFLAQKTASQETTAAAGSRSELVYARENKYGAHNYHPLPVALTKGEGVFVWDVEG 69
Query: 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM 134
+Y D+LSAYSAVNQGHCHPKI+ AL QA KL L+SRAFY+D + E +T +FG+D
Sbjct: 70 KRYFDYLSAYSAVNQGHCHPKIVAALTAQASKLALTSRAFYSDVLGEYEEYVTKLFGFDK 129
Query: 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194
VLPMNTG EG ETA KLARKWGY++KK ++A I+ F GRTL+A+S S D +
Sbjct: 130 VLPMNTGVEGGETACKLARKWGYLEKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYE 189
Query: 195 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254
GFGP +PG +++ +++ALE+ K+ + F+ EPIQGEAGV++P DGYLK VR+LC
Sbjct: 190 GFGPFMPGFELIEYDNVSALEESLKDP--NVCAFMVEPIQGEAGVVVPSDGYLKKVRELC 247
Query: 255 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC 314
+KYN+L IADE+Q+GLAR+G++LA D+E+V+PD++ILGKAL GG+ PVSAVL + +VMLC
Sbjct: 248 TKYNVLWIADEVQTGLARTGKLLAVDYEQVQPDILILGKALSGGMYPVSAVLCNDQVMLC 307
Query: 315 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374
I+PGEHGST+GGNPL VA+A+L+V+++EKLAE + +G+ LR L + + + V
Sbjct: 308 IKPGEHGSTYGGNPLGCRVAMAALEVLQEEKLAENAFKMGDLLRNELSTLPK---DVVSV 364
Query: 375 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
VRG+GL NA+ ++ A+++CL++KE G+LAKPTH I+R PPL I+ +++E
Sbjct: 365 VRGKGLLNAIVINQK---FDAWEVCLRLKENGLLAKPTHGDIIRFAPPLVINETQMRE 419
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|C4L2E7|OAT_EXISA Ornithine aminotransferase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rocD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/405 (54%), Positives = 286/405 (70%), Gaps = 12/405 (2%)
Query: 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKI 96
S + +I L ++ AHNYHP+PIV S+AKG + DPEGN+Y+D LSAYSAVNQGHCHPKI
Sbjct: 2 SKTHDVIELTEKFGAHNYHPLPIVISEAKGIWVTDPEGNRYMDMLSAYSAVNQGHCHPKI 61
Query: 97 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 156
++AL++QA+K+TL+SRAFYND+ F +++ ++ MVLPMNTGAE VETA+K AR+W
Sbjct: 62 IQALKDQADKITLTSRAFYNDQLGRFYDKVVTLTKKQMVLPMNTGAEAVETAVKTARRWA 121
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 216
Y K +A I+ C G FHGRT+AA+SMS + E RGFGPLLPG V +GDI A E
Sbjct: 122 YDVKGIP-GQAEIIVCSGNFHGRTMAAVSMSTEAEYQRGFGPLLPGFKVVPYGDIDAFEA 180
Query: 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276
E+ A F+ EPIQGEAG+IIPP GYLK +LC ++N+L +ADEIQSGL RSG+
Sbjct: 181 AITEN---TAAFIVEPIQGEAGIIIPPAGYLKRASELCKEHNVLFVADEIQSGLGRSGKW 237
Query: 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 336
A +WE+V PDM ILGKALGGGV P+S V AD+E++ PG HGSTFGGNPLASAV++A
Sbjct: 238 FAIEWEDVTPDMYILGKALGGGVFPISCVAADQEILSVFNPGSHGSTFGGNPLASAVSVA 297
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 396
+L+V+ +E L ERS LG L I +++VRGRGLF +E ++A P
Sbjct: 298 ALEVLEEENLPERSLELGTYFMDRLKSIDNPM---IRDVRGRGLFIGIELTESARPY--- 351
Query: 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
C +KERG+L K TH+T++RL PPL I+ EL + +A+ VL
Sbjct: 352 --CEALKERGLLCKETHETVIRLAPPLVITKEELDQAFEAIEAVL 394
|
Catalyzes the interconversion of ornithine to glutamate semialdehyde. Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) (taxid: 360911) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P49724|OAT_DROAN Ornithine aminotransferase, mitochondrial OS=Drosophila ananassae GN=Oat PE=1 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/408 (52%), Positives = 295/408 (72%), Gaps = 9/408 (2%)
Query: 26 AQPQGGTSPSSSS-SQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAY 84
A Q +P++ S S+ + E +Y AHNYHP+P+ S+ +G +WD EG +Y D+LSAY
Sbjct: 21 AASQETAAPAAGSLSETVFARENKYGAHNYHPLPVALSKGEGVFVWDVEGKRYFDYLSAY 80
Query: 85 SAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEG 144
SAVNQGHCHPKI+KAL EQA KL L+SRAFY+D + E +T +FG+D VLPMNTG EG
Sbjct: 81 SAVNQGHCHPKIVKALTEQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEG 140
Query: 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 204
ETA KLARKWGY++KK ++A I+ F GRTL+A+S S D + GFGP +PG
Sbjct: 141 GETACKLARKWGYLQKKIPENQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFE 200
Query: 205 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
+++ ++TALE+ K+ + F+ EPIQGE GV++P DGYLK VR+LCSK N+L IAD
Sbjct: 201 LIEYDNVTALEEALKDP--NVCAFMVEPIQGERGVVVPSDGYLKKVRELCSKNNVLWIAD 258
Query: 265 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF 324
E+Q+GLAR+G++LA ++E+V+PD++ILGKAL GG+ PVSAVL + VMLCI+PGEHGST+
Sbjct: 259 EVQTGLARTGKLLAVNYEDVQPDILILGKALSGGLYPVSAVLCNDPVMLCIKPGEHGSTY 318
Query: 325 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384
GGNPL VA+A+L+V+++EKLAE + +GE LR L + + + V VRG+GL NA+
Sbjct: 319 GGNPLGCRVAMAALEVLQEEKLAENAFKMGELLRSELSTLPK---DVVSVVRGKGLLNAI 375
Query: 385 EFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
++ A+ +CLK+KE G+LAKPTH I+R PPL I + L+E
Sbjct: 376 VINEK---YDAWKVCLKLKENGLLAKPTHGDIIRFAPPLVIMNPRLRE 420
|
Drosophila ananassae (taxid: 7217) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
| >sp|P60299|OAT2_STAAW Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain MW2) GN=rocD2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/406 (54%), Positives = 289/406 (71%), Gaps = 11/406 (2%)
Query: 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKI 96
+ S+++I L Y AHNY P+PIV S+A+G + DPEGNKY+D LSAYSAVNQGH HPKI
Sbjct: 2 TKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKI 61
Query: 97 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 156
++AL++QA+K+TL SRAF++D + E++ + G D LPMNTGAE VETALK AR+W
Sbjct: 62 IQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWA 121
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 216
Y K ++A I++ G FHGRT+A +S+S + E RG+GPLL G KVDFGD+ AL+
Sbjct: 122 YDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKA 181
Query: 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276
E+ A L EPIQGEAG+ IPP+GYLKA+R+LC ++N+L IADEIQ+GL RSG++
Sbjct: 182 AINEN---TAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKL 238
Query: 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 336
A+DW+ V+PD+ ILGKALGGGV P+S VLADKEV+ PG HGSTFGGNPLA A +IA
Sbjct: 239 FATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIA 298
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 396
+LDVI DE L RS LG+ ++ L +I P+ +KEVRGRGLF VE +++A P
Sbjct: 299 ALDVIVDEDLPGRSLELGDYFKEQLKQIDH--PS-IKEVRGRGLFIGVELNESARPY--- 352
Query: 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
C +KE G+L K THDT++R PPL I+ EL + + V +
Sbjct: 353 --CEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ 396
|
Catalyzes the interconversion of ornithine to glutamate semialdehyde. Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| 255557233 | 473 | ornithine aminotransferase, putative [Ri | 0.987 | 0.980 | 0.828 | 0.0 | |
| 224116376 | 469 | predicted protein [Populus trichocarpa] | 0.982 | 0.985 | 0.827 | 0.0 | |
| 304650830 | 477 | ornithine aminotransferase [Nicotiana ta | 0.980 | 0.966 | 0.791 | 0.0 | |
| 346980456 | 478 | ornithine aminotransferase [Malus hupehe | 0.978 | 0.962 | 0.799 | 0.0 | |
| 449439181 | 473 | PREDICTED: probable ornithine aminotrans | 0.987 | 0.980 | 0.782 | 0.0 | |
| 225443914 | 466 | PREDICTED: probable ornithine aminotrans | 0.968 | 0.976 | 0.788 | 0.0 | |
| 9957234 | 466 | ornithine aminotransferase [Vitis vinife | 0.968 | 0.976 | 0.784 | 0.0 | |
| 147818879 | 473 | hypothetical protein VITISV_042180 [Viti | 0.968 | 0.961 | 0.776 | 0.0 | |
| 297791071 | 475 | delta-OAT [Arabidopsis lyrata subsp. lyr | 0.987 | 0.976 | 0.772 | 0.0 | |
| 15237392 | 475 | ornithine-delta-aminotransferase [Arabid | 0.987 | 0.976 | 0.772 | 0.0 |
| >gi|255557233|ref|XP_002519647.1| ornithine aminotransferase, putative [Ricinus communis] gi|223541064|gb|EEF42620.1| ornithine aminotransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/473 (82%), Positives = 429/473 (90%), Gaps = 9/473 (1%)
Query: 4 MGATRRNLHCLLSRVCR--KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVF 61
M +T+R + CLL+RVCR +RSYGA P+G TS SSSQQLI LEY++SAHNYHPVPIVF
Sbjct: 1 MASTKRLVQCLLNRVCRETRRSYGALPEGTTS---SSSQQLIGLEYDFSAHNYHPVPIVF 57
Query: 62 SQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPV 121
S+AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKAL++QAEKLTLSSRAFYND+FP+
Sbjct: 58 SRAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALKDQAEKLTLSSRAFYNDRFPL 117
Query: 122 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181
FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY KKK + DEAIIVSCCGCFHGRT+
Sbjct: 118 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKITKDEAIIVSCCGCFHGRTI 177
Query: 182 AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241
A ISMSCDNEA RGFGPLLPGH KVDFGD ALEKIFKE GD+IAGFLFEPIQGEAGV+I
Sbjct: 178 AVISMSCDNEATRGFGPLLPGHFKVDFGDEVALEKIFKERGDRIAGFLFEPIQGEAGVVI 237
Query: 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 301
PPDGYLKAVRDLCSKYN+LMIADEIQ+GLAR+G+MLA DWE+VRPD+VILGKALGGGVIP
Sbjct: 238 PPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKMLACDWEQVRPDVVILGKALGGGVIP 297
Query: 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 361
VSAVLADK+VMLCIQPGEHGSTFGGNPLASAVA+ASLDV+ DE LAERSA LGEELR L
Sbjct: 298 VSAVLADKDVMLCIQPGEHGSTFGGNPLASAVAVASLDVVIDEGLAERSAQLGEELRDQL 357
Query: 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLT 420
K+QQQFP+Y+KEVRGRGLFNAVEFD AL P+SAYDICLK+KERGILAKPTHDTIVRLT
Sbjct: 358 LKVQQQFPDYIKEVRGRGLFNAVEFDSKALSPISAYDICLKLKERGILAKPTHDTIVRLT 417
Query: 421 PPLSISSNELQEGSKALHDVLELDLPKMRKPKP---ADAPATPCHRCGRNLYG 470
PPLS+S +ELQEGSKAL +VLE DLP + K KP + A +T C RCGRNLY
Sbjct: 418 PPLSMSLDELQEGSKALREVLEFDLPNLLKDKPEKASSAASTSCDRCGRNLYA 470
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116376|ref|XP_002317282.1| predicted protein [Populus trichocarpa] gi|222860347|gb|EEE97894.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/470 (82%), Positives = 424/470 (90%), Gaps = 8/470 (1%)
Query: 4 MGATRRNLHCLLSRVCR--KRSYGAQPQG-GTSPSSSSSQQLINLEYEYSAHNYHPVPIV 60
M ++R L LLSRVCR +R+YG PQG G PS S Q LINLEYEYSAHNYHPVPIV
Sbjct: 1 MATSKRPLQRLLSRVCREARRTYGVLPQGHGHDPSFS--QHLINLEYEYSAHNYHPVPIV 58
Query: 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP 120
FS+AKGS IWDPEGNKYLDFLSAYSAVNQGHCHP+IMKALQEQAEKLTLSSRAFYND+FP
Sbjct: 59 FSKAKGSCIWDPEGNKYLDFLSAYSAVNQGHCHPRIMKALQEQAEKLTLSSRAFYNDRFP 118
Query: 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 180
VFAE LT+MFGYDMVLPMNTGAEGVETALKLARKWGY KKK IDEAII+SCCGCFHGRT
Sbjct: 119 VFAEHLTNMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPIDEAIIISCCGCFHGRT 178
Query: 181 LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240
LAAISMSCDNEA RGFGPLL GHLKVDFGD+ +LEK F+E GD+IAGFLFEPIQGEAGVI
Sbjct: 179 LAAISMSCDNEATRGFGPLLSGHLKVDFGDVVSLEKSFREQGDRIAGFLFEPIQGEAGVI 238
Query: 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300
IPPDGYLK+VRDLCSKYN+LMIADEIQ+GLAR+G+MLA DWE+VRPD+VILGKALGGGVI
Sbjct: 239 IPPDGYLKSVRDLCSKYNVLMIADEIQTGLARTGKMLACDWEQVRPDVVILGKALGGGVI 298
Query: 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 360
PVSAVLADK+VMLCI+PGEHGSTFGGNPLASAVAIASLDVI++E LAERS HLG+ELR
Sbjct: 299 PVSAVLADKDVMLCIRPGEHGSTFGGNPLASAVAIASLDVIKEEGLAERSYHLGKELRHQ 358
Query: 361 LFKIQQQFPNYVKEVRGRGLFNAVEFD-KTALPVSAYDICLKMKERGILAKPTHDTIVRL 419
L K+QQQFP+ +KEVRGRGLFNAVEF+ KT PVSAYDICLK+KERG+LAKPTHDTIVRL
Sbjct: 359 LLKVQQQFPDIIKEVRGRGLFNAVEFNSKTLSPVSAYDICLKLKERGVLAKPTHDTIVRL 418
Query: 420 TPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAP--ATPCHRCGRN 467
TPPLSISS+ELQEGSK LH+VLELDLPKM+ KP P +T C RCGRN
Sbjct: 419 TPPLSISSDELQEGSKTLHEVLELDLPKMKAAKPEKMPIASTTCDRCGRN 468
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304650830|gb|ADM47437.1| ornithine aminotransferase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/474 (79%), Positives = 416/474 (87%), Gaps = 13/474 (2%)
Query: 8 RRNLHCLLSRVCRK-------RSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIV 60
+R L C+L R+ + RS+ A P+G T+ +S SQ LINLEYE SAHNYHP+PIV
Sbjct: 4 KRPLQCMLRRIYTRGGSFRSFRSFSALPEGSTT--TSPSQNLINLEYECSAHNYHPIPIV 61
Query: 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP 120
FS+AKGSSIWDPEG KYLDFLSAYSAVNQGHCHPKIMKAL EQA+ LTLSSRAFYNDKFP
Sbjct: 62 FSKAKGSSIWDPEGKKYLDFLSAYSAVNQGHCHPKIMKALAEQAQTLTLSSRAFYNDKFP 121
Query: 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 180
VFAE +TSMFGYDMVLPMNTGAEGVETALKLARKWG +KK+ +E IIVSCCGCFHGRT
Sbjct: 122 VFAEYITSMFGYDMVLPMNTGAEGVETALKLARKWGSMKKRIPKNEVIIVSCCGCFHGRT 181
Query: 181 LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240
LAAISMSCDNEA RGF PLLPG LKVDFGD ALEK+FKE GDQIAGFLFEPIQGEAGVI
Sbjct: 182 LAAISMSCDNEATRGFWPLLPGQLKVDFGDAVALEKLFKEKGDQIAGFLFEPIQGEAGVI 241
Query: 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300
IPP+GYLKAVRDLCSKYNILMIADEIQSGLARSGR+LA DWEEVR D+VILGKALGGGV+
Sbjct: 242 IPPEGYLKAVRDLCSKYNILMIADEIQSGLARSGRLLACDWEEVRSDVVILGKALGGGVL 301
Query: 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 360
PVSAVLADK+VMLCIQ GEHGSTFGGNPLASAVAIASLDVIR+E LAERSA +GE+LR
Sbjct: 302 PVSAVLADKDVMLCIQAGEHGSTFGGNPLASAVAIASLDVIREEGLAERSAQMGEQLRHQ 361
Query: 361 LFKIQQQFPNYVKEVRGRGLFNAVEFD-KTALPVSAYDICLKMKERGILAKPTHDTIVRL 419
L K+Q+QFPN++KEVRG+GLFNAVE + K+ LPV+AYDIC+K+KERGILAKPTHD+I+RL
Sbjct: 362 LMKVQEQFPNFIKEVRGKGLFNAVELNSKSLLPVTAYDICMKLKERGILAKPTHDSIIRL 421
Query: 420 TPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD---APATPCHRCGRNLYG 470
TPPLS+S ELQEGSKALHDV E+DL KM+K KPA A ++ C RCGRNLYG
Sbjct: 422 TPPLSMSLEELQEGSKALHDVFEVDLLKMQKEKPATVSHATSSVCDRCGRNLYG 475
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|346980456|gb|AEO51063.1| ornithine aminotransferase [Malus hupehensis] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/474 (79%), Positives = 413/474 (87%), Gaps = 14/474 (2%)
Query: 6 ATRRNLHCLLS------RVCRKRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPI 59
A+RR L LS RV R RS+ A PQ + S SSSQ+LIN EY+YSAHNYHP+PI
Sbjct: 2 ASRRCLQRALSTSSLKKRVIR-RSFAAVPQ---ASSPSSSQELINSEYQYSAHNYHPIPI 57
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119
VFSQAKGS I DPEG +YLDFLSAYSAVNQGHCHPKI+KALQEQAE+LTLSSRAFYND+F
Sbjct: 58 VFSQAKGSCIQDPEGKRYLDFLSAYSAVNQGHCHPKILKALQEQAERLTLSSRAFYNDRF 117
Query: 120 PVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 179
P FAE LTSMFGYDMVLPMNTGAE VETALK+ARKWGY K+K DEAIIVSCCGCFHGR
Sbjct: 118 PRFAEYLTSMFGYDMVLPMNTGAEAVETALKVARKWGYEKRKIPKDEAIIVSCCGCFHGR 177
Query: 180 TLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239
TLA ISMSCDNEA RGFGPLLPGHLKVDFGD LEK+FKE+GD+IAGFLFEPIQGEAGV
Sbjct: 178 TLAVISMSCDNEATRGFGPLLPGHLKVDFGDAVGLEKVFKENGDRIAGFLFEPIQGEAGV 237
Query: 240 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 299
IIPPDGYLK VRDLCSKYN+LMIADEIQSGLARSG+MLA DWEEVRPD+VILGKALGGGV
Sbjct: 238 IIPPDGYLKTVRDLCSKYNVLMIADEIQSGLARSGKMLAVDWEEVRPDVVILGKALGGGV 297
Query: 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359
IPVSAVLADK VMLCI+PGEHGSTFGGNPLASAVA+ASLDVIR E+LAERSA +G+ELR
Sbjct: 298 IPVSAVLADKNVMLCIRPGEHGSTFGGNPLASAVAVASLDVIRHERLAERSAEMGQELRN 357
Query: 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVR 418
L KIQQQFPNY+KEVRGRGLFNAVE + L P+SAYDICLK+KE+G+LAKPTHDTI+R
Sbjct: 358 QLVKIQQQFPNYIKEVRGRGLFNAVELNSKNLSPISAYDICLKLKEKGVLAKPTHDTIIR 417
Query: 419 LTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPATP---CHRCGRNLY 469
LTPPLSIS E+QEGSKAL DVLE DLPKM+K KP + +T C RCGRNLY
Sbjct: 418 LTPPLSISLEEVQEGSKALSDVLEHDLPKMQKEKPENTSSTASNICDRCGRNLY 471
|
Source: Malus hupehensis Species: Malus hupehensis Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439181|ref|XP_004137365.1| PREDICTED: probable ornithine aminotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/470 (78%), Positives = 412/470 (87%), Gaps = 6/470 (1%)
Query: 6 ATRRNLHCLLSRVCR-KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQA 64
A+RR L CL+ V R +R + P+ S S + S++LI++E ++SAHNYHP+P+VFS+A
Sbjct: 2 ASRRQLQCLVGLVFRGRRPFSTVPESSAS-SFTVSEKLIDMEKDHSAHNYHPIPVVFSEA 60
Query: 65 KGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAE 124
KGSSIWDPEG +YLDFLSAYSAVNQGHCHPKI+KA QEQAEKLTLSSRAFYNDKFP FA+
Sbjct: 61 KGSSIWDPEGKRYLDFLSAYSAVNQGHCHPKIVKAFQEQAEKLTLSSRAFYNDKFPHFAD 120
Query: 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184
LT +FGYDMVLPMNTGAEGVETALKLARKWGY KK+ DEA IVSCCGCFHGRTL I
Sbjct: 121 YLTQLFGYDMVLPMNTGAEGVETALKLARKWGYKKKRIPKDEAFIVSCCGCFHGRTLGVI 180
Query: 185 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
SMSCDNEA R FGPLLPGHLKVDFGD ALEKIFKE GD+IAGFLFEPIQGEAGVIIPPD
Sbjct: 181 SMSCDNEATREFGPLLPGHLKVDFGDADALEKIFKEHGDRIAGFLFEPIQGEAGVIIPPD 240
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
GYLKAVRDLC+KYNILMIADEIQSGLARSG++LA DWE VRPD+VILGKALGGGVIPVSA
Sbjct: 241 GYLKAVRDLCTKYNILMIADEIQSGLARSGKLLACDWENVRPDLVILGKALGGGVIPVSA 300
Query: 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364
VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL+VI+DE+LAERSA LGEEL++ L KI
Sbjct: 301 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLEVIKDERLAERSAKLGEELKEQLIKI 360
Query: 365 QQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTPPL 423
Q++FP Y+K VRGRGLFNAVE AL PVSAYDIC+K+KERG+LAKPTHDTI+RLTPPL
Sbjct: 361 QERFPQYIKNVRGRGLFNAVELKGKALSPVSAYDICMKLKERGVLAKPTHDTIIRLTPPL 420
Query: 424 SISSNELQEGSKALHDVLELDLPKMRKPKPADAPATP---CHRCGRNLYG 470
SIS +EL+EGSKA+HDVLE+DLPK+ K KP A ++ C RCGRNLY
Sbjct: 421 SISLDELKEGSKAVHDVLEIDLPKLMKEKPHTASSSDSNICDRCGRNLYA 470
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443914|ref|XP_002278418.1| PREDICTED: probable ornithine aminotransferase [Vitis vinifera] gi|297740745|emb|CBI30927.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/468 (78%), Positives = 405/468 (86%), Gaps = 13/468 (2%)
Query: 6 ATRRNLHCLLSRVCR-KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQA 64
ATRR + +CR RS+GA P+G SSSQ LINLEYEYSAHNYHP+PIVFSQA
Sbjct: 4 ATRR----FFNTICRGTRSFGALPEG----IPSSSQHLINLEYEYSAHNYHPIPIVFSQA 55
Query: 65 KGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAE 124
KGS+IWDPEG KYLDFLSAYSAVNQGHCHPK++KAL EQAE+LTLSSRAFYND+FP+FAE
Sbjct: 56 KGSTIWDPEGKKYLDFLSAYSAVNQGHCHPKVLKALVEQAERLTLSSRAFYNDRFPIFAE 115
Query: 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184
RL +MFGYDMVLPMNTGAEGVETALKLARKWGY KKK D+AIIVSCCGCFHGRTLA I
Sbjct: 116 RLKNMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPKDQAIIVSCCGCFHGRTLAVI 175
Query: 185 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
SMSCDNEA RGFGPLLPGHLKVDFGD ALEKIF+E+GD+IAGFLFEPIQGEAGVIIPPD
Sbjct: 176 SMSCDNEATRGFGPLLPGHLKVDFGDEVALEKIFEENGDRIAGFLFEPIQGEAGVIIPPD 235
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
GYLKAVR+LCSK+NILMIADEIQSGL RSGRMLA DW EVRPD+VILGKALGGGVI VSA
Sbjct: 236 GYLKAVRELCSKFNILMIADEIQSGLGRSGRMLACDWAEVRPDVVILGKALGGGVIAVSA 295
Query: 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364
VLADK+VML IQPGEHGSTFGGNPLASAVA+ASLDVI +E L+ERS +G+ELR L KI
Sbjct: 296 VLADKDVMLSIQPGEHGSTFGGNPLASAVAVASLDVITEEGLSERSDQMGQELRNQLMKI 355
Query: 365 QQQFPNYVKEVRGRGLFNAVEFD-KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPL 423
Q FPN +KEVRG+GLFNAVE + K PVSAYDICLK+KERG+LAKPTHDTI+RLTPPL
Sbjct: 356 HQLFPNLIKEVRGKGLFNAVELNSKVLFPVSAYDICLKLKERGVLAKPTHDTIIRLTPPL 415
Query: 424 SISSNELQEGSKALHDVLELDLPKMRKPKPADAPATP---CHRCGRNL 468
SIS +ELQEGS AL DV+E D+PKM+K K P T C RCGRN+
Sbjct: 416 SISLDELQEGSNALRDVMEFDVPKMQKAKHKRVPQTTTNICDRCGRNM 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9957234|gb|AAG09278.1|AF177590_1 ornithine aminotransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/468 (78%), Positives = 403/468 (86%), Gaps = 13/468 (2%)
Query: 6 ATRRNLHCLLSRVCR-KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQA 64
ATRR + +CR RS+GA P+G SSSQ LINLEYEYSAHNYHP+PIVFSQA
Sbjct: 4 ATRR----FFNTICRGTRSFGALPEG----IPSSSQHLINLEYEYSAHNYHPIPIVFSQA 55
Query: 65 KGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAE 124
KGS+IWDPEG KYLDFLSAYSAVNQGHCHPK++KAL EQAE+LTLSSRAFYND+FP+FAE
Sbjct: 56 KGSTIWDPEGKKYLDFLSAYSAVNQGHCHPKVLKALVEQAERLTLSSRAFYNDRFPIFAE 115
Query: 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184
RL +MFGYDMVLPMNTGAEGVETALKLARKWGY KKK D+AIIVSCCG HGRTLA I
Sbjct: 116 RLMNMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPKDQAIIVSCCGLLHGRTLAVI 175
Query: 185 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
SMSCDNEA RGFGPLLPGHLKVDFGD ALEKIF+E+GD+IAGFLFEPIQGEAGVIIPPD
Sbjct: 176 SMSCDNEATRGFGPLLPGHLKVDFGDEVALEKIFEENGDRIAGFLFEPIQGEAGVIIPPD 235
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
GYLKAVR+LCSK+NILMIADEIQSGL RSGRMLA DW EVRPD+VILGKALGGGVI VSA
Sbjct: 236 GYLKAVRELCSKFNILMIADEIQSGLGRSGRMLACDWAEVRPDVVILGKALGGGVIAVSA 295
Query: 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364
VLADK+VML IQPGEHGSTFG NPLASAVA+ASLDVI +E L+ERS +G+ELR L KI
Sbjct: 296 VLADKDVMLSIQPGEHGSTFGVNPLASAVAVASLDVITEEGLSERSDQMGQELRNQLMKI 355
Query: 365 QQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTPPL 423
Q FPN +KEVRG+GLFNAVE + AL PVSAYDICLK+KERG+LAKPTHDTI+RLTPPL
Sbjct: 356 HQLFPNLIKEVRGKGLFNAVELNSKALFPVSAYDICLKLKERGVLAKPTHDTIIRLTPPL 415
Query: 424 SISSNELQEGSKALHDVLELDLPKMRKPKPADAPATP---CHRCGRNL 468
SIS +ELQEGS AL DV+E D+PKM+K K P T C RCGRN+
Sbjct: 416 SISLDELQEGSNALRDVMEFDVPKMQKAKHKRVPQTTTNICDRCGRNM 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818879|emb|CAN73779.1| hypothetical protein VITISV_042180 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/475 (77%), Positives = 405/475 (85%), Gaps = 20/475 (4%)
Query: 6 ATRRNLHCLLSRVCR-KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQA 64
ATRR + +CR RS+GA P+G SSSQ LINLEYEYSAHNYHP+PIVFSQA
Sbjct: 4 ATRR----FFNTICRGTRSFGALPEG----IPSSSQHLINLEYEYSAHNYHPIPIVFSQA 55
Query: 65 KGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAE 124
KGS+IWDPEG KYLDFLSAYSAVNQGHCHPK++KAL EQAE+LTLSSRAFYND+FP+FAE
Sbjct: 56 KGSTIWDPEGKKYLDFLSAYSAVNQGHCHPKVLKALVEQAERLTLSSRAFYNDRFPIFAE 115
Query: 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184
RL +MFGYDMVLPMNTGAEGVETALKLARKWGY KKK D+AIIVSCCGCFHGRTLA I
Sbjct: 116 RLXNMFGYDMVLPMNTGAEGVETALKLARKWGYEKKKIPKDQAIIVSCCGCFHGRTLAVI 175
Query: 185 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
SMSCDNEA RGFGPLLPGHLKVDFGD ALEKIF+E+GD+IAGFLFEPIQGEAGVIIPPD
Sbjct: 176 SMSCDNEATRGFGPLLPGHLKVDFGDEVALEKIFEENGDRIAGFLFEPIQGEAGVIIPPD 235
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
GYLKAVR+LCSK+NILMIADEIQSGL RSGRMLA DW EVRPD+VILGKALGGGVI VSA
Sbjct: 236 GYLKAVRELCSKFNILMIADEIQSGLGRSGRMLACDWAEVRPDVVILGKALGGGVIAVSA 295
Query: 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER-------SAHLGEEL 357
VLADK+VML IQPGEHGSTFGGNPLASAVA+ASLDVI +E L+ER S +G+EL
Sbjct: 296 VLADKDVMLSIQPGEHGSTFGGNPLASAVAVASLDVITEEGLSERQEICYLISDQMGQEL 355
Query: 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFD-KTALPVSAYDICLKMKERGILAKPTHDTI 416
R L KI Q FPN +KEVRG+GLFNAVE + K PVSAYDICLK+KERG+LAKPTHDTI
Sbjct: 356 RNQLMKIHQLFPNLIKEVRGKGLFNAVELNSKXLFPVSAYDICLKLKERGVLAKPTHDTI 415
Query: 417 VRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPATP---CHRCGRNL 468
+RLTPPLSIS +ELQEGS AL DV+E D+PKM+K K P T C RCGRN+
Sbjct: 416 IRLTPPLSISLDELQEGSNALRDVMEFDVPKMQKAKHKRVPQTTTNICDRCGRNM 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791071|ref|XP_002863420.1| delta-OAT [Arabidopsis lyrata subsp. lyrata] gi|297309255|gb|EFH39679.1| delta-OAT [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/471 (77%), Positives = 412/471 (87%), Gaps = 7/471 (1%)
Query: 6 ATRRNLHCLLSRVCR---KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFS 62
TRR L+C+ R+ +RSYG PQ + SSSQ+L+ LE E+SAHNYHPVP+VFS
Sbjct: 4 TTRRLLYCISKRITTAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAHNYHPVPVVFS 63
Query: 63 QAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVF 122
+A GS+IWDPEG +Y+DFL+AYSAVNQGHCHPKI+KALQEQ EKLTLSSRAF+NDKFPVF
Sbjct: 64 RANGSTIWDPEGKRYIDFLAAYSAVNQGHCHPKIVKALQEQVEKLTLSSRAFFNDKFPVF 123
Query: 123 AERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
AERLTSMFGYDMVLPMNTGAEGVETALKLARKWG+ KK DE IIVSCCGCFHGRTLA
Sbjct: 124 AERLTSMFGYDMVLPMNTGAEGVETALKLARKWGHEKKNIPKDEVIIVSCCGCFHGRTLA 183
Query: 183 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242
ISMSCDN+A RGFGPLLPG+LKVDFGD +LEKIFKE G++IAGFLFEPIQGEAGVIIP
Sbjct: 184 IISMSCDNDATRGFGPLLPGNLKVDFGDADSLEKIFKEKGEKIAGFLFEPIQGEAGVIIP 243
Query: 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPV 302
PDGYLKAVR+LC+K+N+LMIADE+QSGLARSG+MLA DWEE+RPDMVILGKALGGGVIPV
Sbjct: 244 PDGYLKAVRELCTKHNVLMIADEVQSGLARSGKMLACDWEEIRPDMVILGKALGGGVIPV 303
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
SAVLADK+VML I+PG+HGSTFGGNPLASAVA+ASLDVI +EKL ERSA LGEELR L
Sbjct: 304 SAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMASLDVIEEEKLVERSASLGEELRIQLN 363
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTP 421
+I++QFP Y+KEVRGRGLFNA+EF+ +L PVSAYDICL +KERG+LAKPTH+TIVRLTP
Sbjct: 364 EIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSAYDICLSLKERGVLAKPTHNTIVRLTP 423
Query: 422 PLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPA---TPCHRCGRNLY 469
PLSISS+EL+EGSKALHDVLELDLP +R+ P T C RCGRNLY
Sbjct: 424 PLSISSDELREGSKALHDVLELDLPNLREINSGKTPVSHITECDRCGRNLY 474
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237392|ref|NP_199430.1| ornithine-delta-aminotransferase [Arabidopsis thaliana] gi|9757738|dbj|BAB08263.1| ornithine aminotransferase [Arabidopsis thaliana] gi|66792620|gb|AAY56412.1| At5g46180 [Arabidopsis thaliana] gi|115646724|gb|ABJ17095.1| At5g46180 [Arabidopsis thaliana] gi|332007967|gb|AED95350.1| ornithine-delta-aminotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/471 (77%), Positives = 410/471 (87%), Gaps = 7/471 (1%)
Query: 6 ATRRNLHCLLSRVCR---KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFS 62
TRR L+ + R +RSYG PQ + SSSQ+L+ LE E+SAHNYHPVP+VFS
Sbjct: 4 TTRRLLYYVSKRFSTAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAHNYHPVPVVFS 63
Query: 63 QAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVF 122
+A GS+IWDPEG +Y+DFL+AYSAVNQGHCHPKIMKALQEQ EKLTLSSRAFYNDKFPVF
Sbjct: 64 RANGSTIWDPEGKRYIDFLAAYSAVNQGHCHPKIMKALQEQVEKLTLSSRAFYNDKFPVF 123
Query: 123 AERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
AERLT+MFGYDMVLPMNTGAEGVETALKLARKWG+ KK DEAIIVSCCGCFHGRTLA
Sbjct: 124 AERLTNMFGYDMVLPMNTGAEGVETALKLARKWGHEKKNIPKDEAIIVSCCGCFHGRTLA 183
Query: 183 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242
+SMSCDN+A RGFGPLLPG+LKVDFGD +LEKIFKE GD+IAGFLFEPIQGEAGVIIP
Sbjct: 184 IVSMSCDNDATRGFGPLLPGNLKVDFGDADSLEKIFKEKGDRIAGFLFEPIQGEAGVIIP 243
Query: 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPV 302
PDGYLKAVR+LC+KYN+LMIADE+QSGLARSG+MLA DWEE+RPDMVILGKALGGGVIPV
Sbjct: 244 PDGYLKAVRELCTKYNVLMIADEVQSGLARSGKMLACDWEEIRPDMVILGKALGGGVIPV 303
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
SAVLADK+VML I+PG+HGSTFGGNPLASAVA+ASLDVI +EKL ERSA LGEELR L
Sbjct: 304 SAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMASLDVIVEEKLVERSASLGEELRIQLN 363
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTP 421
+I++QFP Y+KEVRGRGLFNA+EF+ +L PVSAYDICL +KERG+LAKPTH+TIVRLTP
Sbjct: 364 EIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSAYDICLSLKERGVLAKPTHNTIVRLTP 423
Query: 422 PLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPA---TPCHRCGRNLY 469
PLSISS+EL++GS+ALHDVLELDLP + K P T C RCGRNLY
Sbjct: 424 PLSISSDELRDGSEALHDVLELDLPNLLKINSGKTPVSHITECDRCGRNLY 474
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 470 | ||||||
| TAIR|locus:2161398 | 475 | DELTA-OAT "AT5G46180" [Arabido | 0.985 | 0.974 | 0.761 | 7.5e-192 | |
| UNIPROTKB|Q10G56 | 473 | OAT "Ornithine aminotransferas | 0.910 | 0.904 | 0.738 | 6.5e-177 | |
| DICTYBASE|DDB_G0287913 | 416 | oatA "ornithine-oxo-acid trans | 0.823 | 0.930 | 0.570 | 9.9e-126 | |
| CGD|CAL0000636 | 436 | CAR2 [Candida albicans (taxid: | 0.859 | 0.926 | 0.560 | 2.2e-121 | |
| UNIPROTKB|Q59US9 | 436 | CAR2 "Putative uncharacterized | 0.859 | 0.926 | 0.560 | 2.2e-121 | |
| POMBASE|SPBC21C3.08c | 438 | car2 "ornithine transaminase C | 0.859 | 0.922 | 0.558 | 4.1e-120 | |
| ASPGD|ASPL0000050437 | 454 | otaA [Emericella nidulans (tax | 0.857 | 0.887 | 0.526 | 2.6e-118 | |
| SGD|S000004430 | 424 | CAR2 "L-ornithine transaminase | 0.853 | 0.945 | 0.543 | 1e-114 | |
| FB|FBgn0022774 | 431 | Oat "Ornithine aminotransferas | 0.806 | 0.879 | 0.532 | 5.2e-113 | |
| UNIPROTKB|G4N7K3 | 442 | MGG_06392 "Ornithine aminotran | 0.859 | 0.914 | 0.508 | 8.4e-113 |
| TAIR|locus:2161398 DELTA-OAT "AT5G46180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
Identities = 358/470 (76%), Positives = 402/470 (85%)
Query: 7 TRRNLHCLLSRVCR---KRSYGAXXXXXXXXXXXXXXXLINLEYEYSAHNYHPVPIVFSQ 63
TRR L+ + R +RSYG L+ LE E+SAHNYHPVP+VFS+
Sbjct: 5 TRRLLYYVSKRFSTAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAHNYHPVPVVFSR 64
Query: 64 AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFA 123
A GS+IWDPEG +Y+DFL+AYSAVNQGHCHPKIMKALQEQ EKLTLSSRAFYNDKFPVFA
Sbjct: 65 ANGSTIWDPEGKRYIDFLAAYSAVNQGHCHPKIMKALQEQVEKLTLSSRAFYNDKFPVFA 124
Query: 124 ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 183
ERLT+MFGYDMVLPMNTGAEGVETALKLARKWG+ KK DEAIIVSCCGCFHGRTLA
Sbjct: 125 ERLTNMFGYDMVLPMNTGAEGVETALKLARKWGHEKKNIPKDEAIIVSCCGCFHGRTLAI 184
Query: 184 ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPP 243
+SMSCDN+A RGFGPLLPG+LKVDFGD +LEKIFKE GD+IAGFLFEPIQGEAGVIIPP
Sbjct: 185 VSMSCDNDATRGFGPLLPGNLKVDFGDADSLEKIFKEKGDRIAGFLFEPIQGEAGVIIPP 244
Query: 244 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVS 303
DGYLKAVR+LC+KYN+LMIADE+QSGLARSG+MLA DWEE+RPDMVILGKALGGGVIPVS
Sbjct: 245 DGYLKAVRELCTKYNVLMIADEVQSGLARSGKMLACDWEEIRPDMVILGKALGGGVIPVS 304
Query: 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 363
AVLADK+VML I+PG+HGSTFGGNPLASAVA+ASLDVI +EKL ERSA LGEELR L +
Sbjct: 305 AVLADKDVMLHIKPGQHGSTFGGNPLASAVAMASLDVIVEEKLVERSASLGEELRIQLNE 364
Query: 364 IQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTPP 422
I++QFP Y+KEVRGRGLFNA+EF+ +L PVSAYDICL +KERG+LAKPTH+TIVRLTPP
Sbjct: 365 IKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSAYDICLSLKERGVLAKPTHNTIVRLTPP 424
Query: 423 LSISSNELQEGSKALHDVLELDLPKMRKPKPADAPA---TPCHRCGRNLY 469
LSISS+EL++GS+ALHDVLELDLP + K P T C RCGRNLY
Sbjct: 425 LSISSDELRDGSEALHDVLELDLPNLLKINSGKTPVSHITECDRCGRNLY 474
|
|
| UNIPROTKB|Q10G56 OAT "Ornithine aminotransferase, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1718 (609.8 bits), Expect = 6.5e-177, P = 6.5e-177
Identities = 319/432 (73%), Positives = 373/432 (86%)
Query: 42 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQ 101
L+ +E E SAHNYHP+P+VFS+ +GS I DPEGNKY+DFLSAYSAVNQGHCHPK+++AL+
Sbjct: 42 LMRMERERSAHNYHPIPVVFSKGEGSHILDPEGNKYIDFLSAYSAVNQGHCHPKVLRALK 101
Query: 102 EQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKK 161
EQAE+LTLSSRAFYNDKFP+FAE LTSMFGY+M+LPMNTGAEGVETA+KL RKWGY KKK
Sbjct: 102 EQAERLTLSSRAFYNDKFPIFAEYLTSMFGYEMMLPMNTGAEGVETAIKLVRKWGYEKKK 161
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221
+EA+IVSCCGCFHGRTL ISMSCDN+A RGFGPL+PGHLKVDFGD LEKIFK+
Sbjct: 162 IPKNEALIVSCCGCFHGRTLGVISMSCDNDATRGFGPLVPGHLKVDFGDTDGLEKIFKDH 221
Query: 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 281
G++I GFLFEPIQGEAGVIIPPDGYLKAVRDLCS++NILMIADEIQ+G+AR+G+MLA DW
Sbjct: 222 GERICGFLFEPIQGEAGVIIPPDGYLKAVRDLCSRHNILMIADEIQTGIARTGKMLACDW 281
Query: 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 341
E +RPD+VILGKALG GV+PVSAVLADK++MLCI+PGEHGSTFGGNPLASAVA+ASL V+
Sbjct: 282 ENIRPDVVILGKALGAGVVPVSAVLADKDIMLCIKPGEHGSTFGGNPLASAVAVASLKVV 341
Query: 342 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICL 400
DE L ER+A LG+E R L K+QQ+FP ++EVRGRGL NAV+ AL P SAYDIC+
Sbjct: 342 TDEGLVERAAKLGQEFRDQLQKVQQRFPQIIREVRGRGLLNAVDLSNEALSPASAYDICI 401
Query: 401 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP-KPADAPAT 459
K+KERG+LAKPTHDTI+RL PPLSIS EL E SKA DVLE DLP+++K K ++ A
Sbjct: 402 KLKERGVLAKPTHDTIIRLAPPLSISPEELAEASKAFSDVLEHDLPQLQKQIKKTESAAE 461
Query: 460 P--CHRCGRNLY 469
C RCGR+LY
Sbjct: 462 KQSCDRCGRDLY 473
|
|
| DICTYBASE|DDB_G0287913 oatA "ornithine-oxo-acid transaminase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 223/391 (57%), Positives = 298/391 (76%)
Query: 42 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQ 101
LI +E E++AH YHP+P+VF +A G +WD E +Y DFLSAYSAVNQGH HPKI+ AL
Sbjct: 16 LIEMESEFAAHTYHPIPVVFKKASGVHVWDVEEKQYFDFLSAYSAVNQGHSHPKIVSALI 75
Query: 102 EQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKK 161
QA+K LSSRAFYN+ FP +A+ +T FGY+MVLPMNTGAE VET++KLAR+WGYVKK
Sbjct: 76 TQAQKCALSSRAFYNEVFPQYAKYITEYFGYEMVLPMNTGAEAVETSIKLARRWGYVKKG 135
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221
+ D+AI++SC GCFHGRT+ ISMS D + +GPL+ G +K+D+ LE++ +
Sbjct: 136 IAEDQAIVISCKGCFHGRTIGVISMSDDPSSYNKYGPLMNGIIKIDYNSTQQLEEVLSQH 195
Query: 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 281
D++ GF+ EPIQGEAGV++P +GYLK +LC KYN+L++ADEIQ+GL R+GRML SDW
Sbjct: 196 ADRVCGFIVEPIQGEAGVVVPDEGYLKKCYELCKKYNVLLVADEIQTGLCRTGRMLCSDW 255
Query: 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 341
+ ++PD+V+LGKA+ GG++P+SAVL K+VML I+PGEHGST+GG+PLASAVA+A+LDV+
Sbjct: 256 DGIKPDLVLLGKAISGGLLPISAVLGGKDVMLTIKPGEHGSTYGGSPLASAVAMAALDVL 315
Query: 342 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 401
RDE LAE + LGE R + I P ++ VRG+GL NA+ D VSA+DIC+K
Sbjct: 316 RDENLAENAQKLGEHFRAQISNINH--PA-IQLVRGKGLLNAIVIDPN-FTVSAWDICIK 371
Query: 402 MKERGILAKPTHDTIVRLTPPLSISSNELQE 432
E G+LAKPTHD I+RL PPL+I+ ++ +
Sbjct: 372 FAENGLLAKPTHDNIIRLAPPLTITLEQIDQ 402
|
|
| CGD|CAL0000636 CAR2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 235/419 (56%), Positives = 309/419 (73%)
Query: 46 EYE--YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ 103
EYE YSAHNYHP+P+VFS+A+G+ +WDPEG +YLDFLSAYSAVNQGHCHPKI+ AL +Q
Sbjct: 16 EYETKYSAHNYHPLPVVFSKAEGAHVWDPEGKEYLDFLSAYSAVNQGHCHPKIVAALVDQ 75
Query: 104 AEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163
A KLTL SRAF +D F V+A+ +T F Y+MVLPMNTGAE VET LKLARKWGY KK
Sbjct: 76 ASKLTLCSRAFSSDVFGVYAKYITEYFNYEMVLPMNTGAEAVETGLKLARKWGYDKKGIP 135
Query: 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEA-------IRGFGPLLPGHLK---VDFGDITA 213
EAII+S FHGRTL ISMS D +A +RG GP +PG + + +G I
Sbjct: 136 SGEAIILSAVNNFHGRTLGVISMSTDPDATTNFGPYLRGVGPQIPGEPEGTLLRYGVIED 195
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+EK F +GD+IA L EPIQGEAG+++PP+ YL V++LC K+N+L+I DEIQ+G+AR+
Sbjct: 196 VEKAFANAGDKIAAILLEPIQGEAGIVVPPEDYLPRVQELCKKHNVLLICDEIQTGIART 255
Query: 274 GRMLASDWEE-VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332
G+ML + + V+PD+V+LGKA+ GGV+PVSAVL+ KEVM ++PG HGST+GGNPLA
Sbjct: 256 GKMLCYEHSKGVKPDIVLLGKAISGGVMPVSAVLSSKEVMSTLEPGSHGSTYGGNPLACR 315
Query: 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392
VAIA+LDV+RDE L ER+ LG LR+ L ++Q++ + EVRG+GL +A+ D++
Sbjct: 316 VAIAALDVVRDENLVERAQKLGALLREKLEELQKESNGMISEVRGKGLLSAIVIDESKTN 375
Query: 393 V-SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450
+A+D+CL MK G+LAKPTHD I+RL PPL IS +L +G ++ L+ +LP + K
Sbjct: 376 GRTAWDLCLLMKNHGVLAKPTHDNIIRLAPPLVISEEDLLKGVDSIRKSLK-ELPNVAK 433
|
|
| UNIPROTKB|Q59US9 CAR2 "Putative uncharacterized protein CAR2" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 235/419 (56%), Positives = 309/419 (73%)
Query: 46 EYE--YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ 103
EYE YSAHNYHP+P+VFS+A+G+ +WDPEG +YLDFLSAYSAVNQGHCHPKI+ AL +Q
Sbjct: 16 EYETKYSAHNYHPLPVVFSKAEGAHVWDPEGKEYLDFLSAYSAVNQGHCHPKIVAALVDQ 75
Query: 104 AEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163
A KLTL SRAF +D F V+A+ +T F Y+MVLPMNTGAE VET LKLARKWGY KK
Sbjct: 76 ASKLTLCSRAFSSDVFGVYAKYITEYFNYEMVLPMNTGAEAVETGLKLARKWGYDKKGIP 135
Query: 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEA-------IRGFGPLLPGHLK---VDFGDITA 213
EAII+S FHGRTL ISMS D +A +RG GP +PG + + +G I
Sbjct: 136 SGEAIILSAVNNFHGRTLGVISMSTDPDATTNFGPYLRGVGPQIPGEPEGTLLRYGVIED 195
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+EK F +GD+IA L EPIQGEAG+++PP+ YL V++LC K+N+L+I DEIQ+G+AR+
Sbjct: 196 VEKAFANAGDKIAAILLEPIQGEAGIVVPPEDYLPRVQELCKKHNVLLICDEIQTGIART 255
Query: 274 GRMLASDWEE-VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332
G+ML + + V+PD+V+LGKA+ GGV+PVSAVL+ KEVM ++PG HGST+GGNPLA
Sbjct: 256 GKMLCYEHSKGVKPDIVLLGKAISGGVMPVSAVLSSKEVMSTLEPGSHGSTYGGNPLACR 315
Query: 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392
VAIA+LDV+RDE L ER+ LG LR+ L ++Q++ + EVRG+GL +A+ D++
Sbjct: 316 VAIAALDVVRDENLVERAQKLGALLREKLEELQKESNGMISEVRGKGLLSAIVIDESKTN 375
Query: 393 V-SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450
+A+D+CL MK G+LAKPTHD I+RL PPL IS +L +G ++ L+ +LP + K
Sbjct: 376 GRTAWDLCLLMKNHGVLAKPTHDNIIRLAPPLVISEEDLLKGVDSIRKSLK-ELPNVAK 433
|
|
| POMBASE|SPBC21C3.08c car2 "ornithine transaminase Car2" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 235/421 (55%), Positives = 310/421 (73%)
Query: 45 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQA 104
LE EY+AHNYHP+P+ FS+AKG+ +WDPEG +YLDFLSAYSAVNQGHCHPKI++AL EQA
Sbjct: 19 LENEYAAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQA 78
Query: 105 EKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSI 164
+++TLSSRAFYNDKF FA+ +T FGY+MV+PMNTGAE VETA KLAR WGY KK
Sbjct: 79 QRVTLSSRAFYNDKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLWGYKAKKIPT 138
Query: 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-------GHLKV-DFGDITALEK 216
DEAII+SC FHGRT+ ISMS D +A +GP LP G +V + +I L+
Sbjct: 139 DEAIILSCVDNFHGRTMGIISMSTDPDARDNYGPYLPNVGPKISGADRVLRYNNIEDLKY 198
Query: 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276
G ++A FL EPIQGEAGV++P DGYL+ LC +N+L IADE+Q+G+AR+G+M
Sbjct: 199 YLDTFGPKVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTGKM 258
Query: 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 336
L + V+PD+VILGKA+ GGV PVSAVL+ +E+ML +PG HGST+GGNPL +AV+IA
Sbjct: 259 LCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNPLGAAVSIA 318
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV-SA 395
+L+V+++EKL ER+A LGE+ R L I+ + P V++VRGRGL NAV D++ +A
Sbjct: 319 ALEVVKEEKLTERAAVLGEKFRTAL--IECKSP-IVQKVRGRGLLNAVVIDESKTNGRTA 375
Query: 396 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG----SKALHDVLELDL-PKMRK 450
+D+CL M+ RG+LAKPTH I+R +PPL I+ +L +G K+L+D+ +D+ P K
Sbjct: 376 WDLCLIMRSRGVLAKPTHGNIIRFSPPLVITEEDLMKGIEVIKKSLNDLPTIDMTPYAEK 435
Query: 451 P 451
P
Sbjct: 436 P 436
|
|
| ASPGD|ASPL0000050437 otaA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 219/416 (52%), Positives = 303/416 (72%)
Query: 43 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
I E +++AHNYHP+P+VF++A+G+S+WDPEG YLDFLSAYSAVNQGHCHPK++ AL +
Sbjct: 22 IQAENDFAAHNYHPLPVVFARAQGTSVWDPEGRHYLDFLSAYSAVNQGHCHPKLVAALVD 81
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF 162
QA +LTLSSRAFYND FP FAE +T FG+DMVLPMNTGAE VET +K+ARKWGY K
Sbjct: 82 QASRLTLSSRAFYNDVFPKFAEMVTKYFGFDMVLPMNTGAEAVETGIKIARKWGYKVKGI 141
Query: 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-------LPGHLK-VDFGDITAL 214
+EAII+S FHGRT+AAIS+S D E+ +GP +PG K + + D AL
Sbjct: 142 PENEAIILSAENNFHGRTMAAISLSSDPESRENYGPYVPNIGCTIPGTEKPITYNDKAAL 201
Query: 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
+ F+++G +A FL EPIQGEAG+I+P D YL+ R LC ++N+L+I DEIQ+G+AR+G
Sbjct: 202 REAFEKAGSNLAAFLVEPIQGEAGIIVPDDDYLQLARSLCDQHNVLLICDEIQTGIARTG 261
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 334
++L +W ++PDMV+LGKA+ GG+ PVS VL K+VML ++PG HGST+GGNPLA AVA
Sbjct: 262 KLLCHEWSGIKPDMVLLGKAISGGMYPVSCVLGRKDVMLTVEPGTHGSTYGGNPLACAVA 321
Query: 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV- 393
I +L+V+++E + ER+ LG+ R L IQ ++ VRG+GL NA+ D++
Sbjct: 322 IRALEVVQEENMVERAEKLGQAFRSGLEAIQNPI---IQTVRGKGLLNAIVIDESKTNGH 378
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449
+A+D+C+ MKE+G+LAKPTH I+RL PPL I+ E+ + + + + +LP ++
Sbjct: 379 TAWDLCMLMKEKGLLAKPTHQNIIRLAPPLVITEEEIAKALEIIKAAVA-ELPNLK 433
|
|
| SGD|S000004430 CAR2 "L-ornithine transaminase (OTAse)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 224/412 (54%), Positives = 287/412 (69%)
Query: 43 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
I E +YSAHNYHP+P+VF +AKG+ +WDPEG YLDFLSAYSAVNQGHCHP I+KAL E
Sbjct: 12 IEWENKYSAHNYHPLPVVFHKAKGAHVWDPEGKLYLDFLSAYSAVNQGHCHPHIIKALTE 71
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF 162
QA+ LTLSSRAF+ND + FA+ +T FG++ VLPMNTGAE VETALKLAR+WGY+KK
Sbjct: 72 QAQTLTLSSRAFHNDVYAQFAKFVTEFFGFETVLPMNTGAEAVETALKLARRWGYMKKNI 131
Query: 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLP----GHL--KVDFGDITALE 215
D+AII+ G FHGRT AIS+S D E + FGP +P GH K+ +G
Sbjct: 132 PQDKAIILGAEGNFHGRTFGAISLSTDYEDSKLHFGPFVPNVASGHSVHKIRYGHAEDFV 191
Query: 216 KIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
I + G +A + EPIQGEAG+++PP Y V LC K+N+L+I DEIQ+G+ R+G
Sbjct: 192 PILESPEGKNVAAIILEPIQGEAGIVVPPADYFPKVSALCRKHNVLLIVDEIQTGIGRTG 251
Query: 275 RMLASDW--EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332
+L D E +PD+V+LGKAL GGV+PVS VL+ ++M C PG HGSTFGGNPLAS
Sbjct: 252 ELLCYDHYKAEAKPDIVLLGKALSGGVLPVSCVLSSHDIMSCFTPGSHGSTFGGNPLASR 311
Query: 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-AL 391
VAIA+L+VIRDEKL +R+A LG L +Q + + EVRG GL A+ D + A
Sbjct: 312 VAIAALEVIRDEKLCQRAAQLGSSFIAQLKALQAKSNGIISEVRGMGLLTAIVIDPSKAN 371
Query: 392 PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 443
+A+D+CL MK+ G+LAKPTHD I+RL PPL IS +LQ G + + ++L
Sbjct: 372 GKTAWDLCLLMKDHGLLAKPTHDHIIRLAPPLVISEEDLQTGVETIAKCIDL 423
|
|
| FB|FBgn0022774 Oat "Ornithine aminotransferase precursor" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 206/387 (53%), Positives = 288/387 (74%)
Query: 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105
E +Y AHNYHP+P+ ++ +G +WD EG +Y D+LSAYSAVNQGHCHPKI+ AL QA
Sbjct: 41 ENKYGAHNYHPLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQAS 100
Query: 106 KLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
KL L+SRAFY+D + E +T +FG+D VLPMNTG EG ETA KLARKWGY++KK +
Sbjct: 101 KLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKWGYLEKKIPAN 160
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
+A I+ F GRTL+A+S S D + GFGP +PG +++ +++ALE+ K+ +
Sbjct: 161 QAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFELIEYDNVSALEESLKDPN--V 218
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
F+ EPIQGEAGV++P DGYLK VR+LC+KYN+L IADE+Q+GLAR+G++LA D+E+V+
Sbjct: 219 CAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLAVDYEQVQ 278
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD++ILGKAL GG+ PVSAVL + +VMLCI+PGEHGST+GGNPL VA+A+L+V+++EK
Sbjct: 279 PDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAALEVLQEEK 338
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
LAE + +G+ LR L + + + V VRG+GL NA+ ++ A+++CL++KE
Sbjct: 339 LAENAFKMGDLLRNELSTLPK---DVVSVVRGKGLLNAIVINQK---FDAWEVCLRLKEN 392
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQE 432
G+LAKPTH I+R PPL I+ +++E
Sbjct: 393 GLLAKPTHGDIIRFAPPLVINETQMRE 419
|
|
| UNIPROTKB|G4N7K3 MGG_06392 "Ornithine aminotransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 212/417 (50%), Positives = 297/417 (71%)
Query: 43 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
I E EY+AHNYHP+P+VF++A+G ++WDPEG YLD LSAYSAVNQGHCHP+++KAL E
Sbjct: 26 IAAENEYAAHNYHPIPVVFARAQGVNVWDPEGKHYLDLLSAYSAVNQGHCHPELIKALAE 85
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF 162
QA +LTLSSRAFYND FPV+A ++ +FGYDMVLPMNTGAE VETA+K+ARKW Y K
Sbjct: 86 QAGRLTLSSRAFYNDVFPVWAAKVRDLFGYDMVLPMNTGAEAVETAIKIARKWAYKVKGV 145
Query: 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP--GHL------KVDFGDITAL 214
+A + S FHGRT+ AIS+S D E+ +GP +P G + ++ + +I+ L
Sbjct: 146 PQGKAHVFSVADNFHGRTMTAISLSTDPESRDNYGPYVPNIGAICPTTGRQIRYNNISDL 205
Query: 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
E + + G + A F+ EPIQGEAGV++P D YL V LC K+N+L I DEIQ+G+AR+G
Sbjct: 206 EIVLEAHGAETAAFIVEPIQGEAGVVVPDDDYLAKVHALCKKHNVLFICDEIQTGIARTG 265
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 334
+ML +W ++PD+V LGKA+ GG+ PVS VLADK+VM+ ++PG HGST+GGNPL AV+
Sbjct: 266 KMLCCNWAGIKPDIVTLGKAISGGMYPVSCVLADKDVMMVVEPGTHGSTYGGNPLGCAVS 325
Query: 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV- 393
I +L+++ + KLA+++ HLG R+ + + V++VRG+GL NAV D++A
Sbjct: 326 IRALELVEEGKLADQADHLGRIFREGVEAFKSPI---VQQVRGKGLLNAVVIDESAAGGR 382
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450
+A+D+C+ +K +G+LAKPTH I+R PPL I+ EL++ + + L +LP K
Sbjct: 383 TAWDLCMLLKSKGLLAKPTHGNIIRFAPPLIITEEELKKALSIIGEALT-ELPTAEK 438
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q81GP2 | OAT_BACCR | 2, ., 6, ., 1, ., 1, 3 | 0.4962 | 0.8340 | 0.9898 | yes | no |
| C0ZBR4 | OAT_BREBN | 2, ., 6, ., 1, ., 1, 3 | 0.5085 | 0.8425 | 0.9924 | yes | no |
| Q6GID1 | OAT2_STAAR | 2, ., 6, ., 1, ., 1, 3 | 0.5394 | 0.8404 | 0.9974 | yes | no |
| C5D6R2 | OAT_GEOSW | 2, ., 6, ., 1, ., 1, 3 | 0.5482 | 0.8148 | 0.9623 | yes | no |
| Q92413 | OAT_EMENI | 2, ., 6, ., 1, ., 1, 3 | 0.5210 | 0.8829 | 0.9140 | yes | no |
| Q81TV3 | OAT_BACAN | 2, ., 6, ., 1, ., 1, 3 | 0.4962 | 0.8340 | 0.9898 | yes | no |
| Q5HQK4 | OAT_STAEQ | 2, ., 6, ., 1, ., 1, 3 | 0.5431 | 0.8148 | 0.9671 | yes | no |
| Q9P7L5 | OAT_SCHPO | 2, ., 6, ., 1, ., 1, 3 | 0.5452 | 0.8808 | 0.9452 | yes | no |
| B9ITF9 | OAT_BACCQ | 2, ., 6, ., 1, ., 1, 3 | 0.4987 | 0.8340 | 0.9898 | yes | no |
| Q7W1E4 | OAT_BORPA | 2, ., 6, ., 1, ., 1, 3 | 0.4714 | 0.8382 | 0.9586 | yes | no |
| B9DIU0 | OAT_STACT | 2, ., 6, ., 1, ., 1, 3 | 0.5358 | 0.8382 | 0.9949 | yes | no |
| P07991 | OAT_YEAST | 2, ., 6, ., 1, ., 1, 3 | 0.5402 | 0.8744 | 0.9693 | yes | no |
| C1EL61 | OAT_BACC3 | 2, ., 6, ., 1, ., 1, 3 | 0.4987 | 0.8340 | 0.9898 | yes | no |
| Q9FNK4 | OAT_ARATH | 2, ., 6, ., 1, ., 1, 3 | 0.7728 | 0.9872 | 0.9768 | yes | no |
| Q8CT82 | OAT_STAES | 2, ., 6, ., 1, ., 1, 3 | 0.5431 | 0.8148 | 0.9671 | yes | no |
| C3P3K3 | OAT_BACAA | 2, ., 6, ., 1, ., 1, 3 | 0.4962 | 0.8340 | 0.9898 | yes | no |
| Q18040 | OAT_CAEEL | 2, ., 6, ., 1, ., 1, 3 | 0.4975 | 0.8574 | 0.9549 | yes | no |
| P04182 | OAT_RAT | 2, ., 6, ., 1, ., 1, 3 | 0.4774 | 0.9063 | 0.9703 | yes | no |
| P04181 | OAT_HUMAN | 2, ., 6, ., 1, ., 1, 3 | 0.5222 | 0.8468 | 0.9066 | yes | no |
| Q5HHC8 | OAT2_STAAC | 2, ., 6, ., 1, ., 1, 3 | 0.5418 | 0.8404 | 0.9974 | yes | no |
| Q49W96 | OAT2_STAS1 | 2, ., 6, ., 1, ., 1, 3 | 0.5344 | 0.8404 | 0.9974 | yes | no |
| Q3ZCF5 | OAT_BOVIN | 2, ., 6, ., 1, ., 1, 3 | 0.5222 | 0.8468 | 0.9066 | yes | no |
| C4L2E7 | OAT_EXISA | 2, ., 6, ., 1, ., 1, 3 | 0.5432 | 0.8361 | 0.9825 | yes | no |
| Q54JP5 | OAT_DICDI | 2, ., 6, ., 1, ., 1, 3 | 0.5530 | 0.8531 | 0.9639 | yes | no |
| B9EAM9 | OAT_MACCJ | 2, ., 6, ., 1, ., 1, 3 | 0.5583 | 0.8148 | 0.9647 | yes | no |
| Q8EP32 | OAT_OCEIH | 2, ., 6, ., 1, ., 1, 3 | 0.5123 | 0.8361 | 0.9874 | yes | no |
| P38021 | OAT_BACSU | 2, ., 6, ., 1, ., 1, 3 | 0.5209 | 0.8382 | 0.9825 | yes | no |
| Q6LFH8 | OAT_PLAF7 | 2, ., 6, ., 1, ., 1, 3 | 0.4975 | 0.8404 | 0.9541 | yes | no |
| C3LBX0 | OAT_BACAC | 2, ., 6, ., 1, ., 1, 3 | 0.4962 | 0.8340 | 0.9898 | yes | no |
| Q6GAW9 | OAT2_STAAS | 2, ., 6, ., 1, ., 1, 3 | 0.5418 | 0.8404 | 0.9974 | yes | no |
| P49724 | OAT_DROAN | 2, ., 6, ., 1, ., 1, 3 | 0.5294 | 0.8489 | 0.9236 | N/A | no |
| Q9VW26 | OAT_DROME | 2, ., 6, ., 1, ., 1, 3 | 0.5095 | 0.8659 | 0.9443 | yes | no |
| Q89RB7 | OAT_BRAJA | 2, ., 6, ., 1, ., 1, 3 | 0.4804 | 0.8553 | 0.9950 | yes | no |
| P60299 | OAT2_STAAW | 2, ., 6, ., 1, ., 1, 3 | 0.5418 | 0.8404 | 0.9974 | yes | no |
| P60298 | OAT2_STAAN | 2, ., 6, ., 1, ., 1, 3 | 0.5418 | 0.8404 | 0.9974 | yes | no |
| Q7VSA0 | OAT_BORPE | 2, ., 6, ., 1, ., 1, 3 | 0.4714 | 0.8382 | 0.9586 | yes | no |
| Q10G56 | OAT_ORYSJ | 2, ., 6, ., 1, ., 1, 3 | 0.7316 | 0.9191 | 0.9133 | yes | no |
| Q9K5Z2 | OAT_BACHD | 2, ., 6, ., 1, ., 1, 3 | 0.5246 | 0.8404 | 0.9924 | yes | no |
| P60297 | OAT2_STAAM | 2, ., 6, ., 1, ., 1, 3 | 0.5418 | 0.8404 | 0.9974 | yes | no |
| P29758 | OAT_MOUSE | 2, ., 6, ., 1, ., 1, 3 | 0.4842 | 0.9063 | 0.9703 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.921 |
| 3rd Layer | 2.6.1.13 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.8__172__AT5G46180.1 | annotation not avaliable (475 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Al_scaffold_0003_3514 | annotation not avaliable (401 aa) | • | • | • | • | 0.948 | ||||
 | fgenesh2_kg.2__1808__AT1G75330.1 | annotation not avaliable (375 aa) | • | • | • | • | 0.939 | ||||
 | scaffold_701843.1 | annotation not avaliable (495 aa) | • | • | • | 0.904 | |||||
 | fgenesh2_kg.5__2197__AT3G57560.1 | annotation not avaliable (346 aa) | • | • | • | 0.895 | |||||
 | fgenesh2_kg.4__1804__AT2G37500.1 | annotation not avaliable (468 aa) | • | • | • | 0.879 | |||||
 | fgenesh2_kg.6__1057__AT5G10920.1 | annotation not avaliable (518 aa) | • | • | • | 0.838 | |||||
 | scaffold_403221.1 | annotation not avaliable (377 aa) | • | • | • | 0.736 | |||||
 | Al_scaffold_0006_1383 | annotation not avaliable (276 aa) | • | • | • | 0.639 | |||||
 | scaffold_104513.1 | annotation not avaliable (435 aa) | • | • | 0.538 | ||||||
 | fgenesh2_kg.6__378__AT5G04620.2 | annotation not avaliable (476 aa) | • | • | • | 0.522 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 470 | |||
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 0.0 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 0.0 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 0.0 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 0.0 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-179 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 1e-162 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-161 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 1e-146 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 1e-134 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 1e-129 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 1e-114 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 1e-105 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 1e-101 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 6e-98 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 4e-97 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 4e-93 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 4e-91 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 6e-91 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 8e-90 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 7e-86 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 2e-83 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 4e-83 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 5e-82 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 9e-82 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 1e-79 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 6e-79 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 3e-78 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 7e-76 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 3e-75 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 3e-73 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 6e-73 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 3e-72 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 5e-71 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 9e-70 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 4e-67 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 2e-66 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 2e-66 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 2e-65 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 3e-65 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 4e-65 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 6e-65 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 1e-64 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 9e-64 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 2e-63 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 2e-63 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 5e-63 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 1e-61 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 4e-61 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 4e-60 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 5e-59 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 3e-58 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 4e-58 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 4e-58 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 6e-58 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 5e-56 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 4e-55 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-54 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 3e-52 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 4e-52 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 8e-49 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 4e-48 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 8e-48 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 1e-47 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 2e-43 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 7e-43 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 1e-42 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 1e-42 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 1e-41 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 4e-41 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 6e-40 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 2e-39 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 2e-38 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 2e-38 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 2e-35 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 5e-35 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 8e-35 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 3e-32 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 7e-27 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 3e-26 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 5e-22 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 8e-12 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 2e-09 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 4e-06 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 2e-05 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 2e-04 | |
| PRK05958 | 385 | PRK05958, PRK05958, 8-amino-7-oxononanoate synthas | 3e-04 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 883 bits (2283), Expect = 0.0
Identities = 368/474 (77%), Positives = 405/474 (85%), Gaps = 6/474 (1%)
Query: 3 SMGATRRNLHCLLSRVCR--KRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIV 60
SM RR L L R R +RSYGA P+G S SS LI LE +YSAHNYHP+P+V
Sbjct: 1 SMALARRLLQRLARRSRRLRRRSYGALPEGSAPSLSDSSAHLIELEEKYSAHNYHPIPVV 60
Query: 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP 120
FS+AKGS IWDPEG KYLDFLSAYSAVNQGHCHPKI+KAL EQAEKLTLSSRAFYNDKFP
Sbjct: 61 FSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFP 120
Query: 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 180
FAE LTSMFGYDMVLPMNTGAEGVETA+KLARKWGY KK +EAIIVSCCGCFHGRT
Sbjct: 121 EFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRT 180
Query: 181 LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240
LAAISMSCDNEA RGFGPLLPGHLKVDFGD+ ALEKIF+E GD+IA FLFEPIQGEAGV+
Sbjct: 181 LAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVV 240
Query: 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300
IPPDGYLKAVR+LCSK+N+LMIADEIQ+GLAR+G+MLA DWEEVRPD+VILGKALGGGVI
Sbjct: 241 IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVI 300
Query: 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 360
PVSAVLADK+VMLCI+PGEHGSTFGGNPLASAVA+A+L V++DEKLAERSA LG+ELR
Sbjct: 301 PVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQ 360
Query: 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRL 419
L KIQ+QFP +KEVRGRGL NAV + L PVSAYD+CLK+KERG+LAKPTHDTI+RL
Sbjct: 361 LQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRL 420
Query: 420 TPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPA---TPCHRCGRNLYG 470
PPLSIS +ELQE SKAL DVLE DLPK++ K P TPC RCGRNLY
Sbjct: 421 APPLSISEDELQECSKALSDVLEHDLPKLQSAKKEKTPKAAPTPCDRCGRNLYA 474
|
Length = 474 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 705 bits (1822), Expect = 0.0
Identities = 242/404 (59%), Positives = 311/404 (76%), Gaps = 3/404 (0%)
Query: 39 SQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMK 98
S++ I E +Y AHNYHP+P+VFS+A+G +WD EG +YLDFLSAYSAVNQGHCHPKI+K
Sbjct: 1 SEEAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVK 60
Query: 99 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 158
AL EQA+KLTLSSRAFYND F FAE +T +FGYD VLPMNTGAE VETA+KLARKWGY
Sbjct: 61 ALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYK 120
Query: 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 218
K ++AIIVS G FHGRTL AISMS D ++ FGP +PG K+ + ++ ALE+
Sbjct: 121 VKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEAL 180
Query: 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
++ G + F+ EPIQGEAGV++P DGYLK VR+LC+K+N+L+IADEIQ+GL R+G++L
Sbjct: 181 EDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLC 240
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 338
D E V+PD+V+LGKAL GGV PVSAVLAD +VML I+PGEHGST+GGNPLA AVA+A+L
Sbjct: 241 VDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAAL 300
Query: 339 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 398
+V+ +EKLAE + LGE R L K+ + EVRGRGL NA+ D++ +A+D+
Sbjct: 301 EVLEEEKLAENAEKLGEIFRDQLKKLP---KPIITEVRGRGLLNAIVIDESKTGRTAWDL 357
Query: 399 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
CLK+KE+G+LAKPTH I+RL PPL I+ +L EG + + V++
Sbjct: 358 CLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 597 bits (1540), Expect = 0.0
Identities = 223/388 (57%), Positives = 287/388 (73%), Gaps = 4/388 (1%)
Query: 45 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQA 104
LE +Y AHNYHP+P+V + KG +WD EG KY DFLSAYSAVNQGHCHPKI+ AL QA
Sbjct: 1 LENQYGAHNYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQA 60
Query: 105 EKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSI 164
+KLTL+SRAFYND + + +T +FGYD VLPMN+GAE ETALK ARKWGY K
Sbjct: 61 QKLTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPE 120
Query: 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQ 224
++A I+ C G F GRT+ A S S D + FGP +PG VD+ D+ ALEK+ +
Sbjct: 121 NQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ--DPN 178
Query: 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 284
+A F+ EPIQGEAGVI+P DGYLK V +LC KYN+L+I DEIQ+GL R+G++LA D E V
Sbjct: 179 VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV 238
Query: 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344
+PD+V+LGKAL GG+ P+SAVLA+ +VML I+PGEHGST+GGNPLA AVA+ +L+V+++E
Sbjct: 239 KPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE 298
Query: 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 404
KLAE + LGE R L K + +VKE+RG+GL NA+ FD + V+A+D+CLK+KE
Sbjct: 299 KLAENAQRLGEVFRDGL-KELLKKSPWVKEIRGKGLLNAIVFDHSDG-VNAWDLCLKLKE 356
Query: 405 RGILAKPTHDTIVRLTPPLSISSNELQE 432
G+LAKPTHD I+R PPL I+ +L +
Sbjct: 357 NGLLAKPTHDNIIRFAPPLVITKEQLDQ 384
|
Length = 400 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 546 bits (1409), Expect = 0.0
Identities = 216/406 (53%), Positives = 291/406 (71%), Gaps = 11/406 (2%)
Query: 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKI 96
+ S+++I L Y AHNYHP+PIV S+A+G + DPEGN+Y+D LSAYSAVNQGH HPKI
Sbjct: 2 TKSEKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKI 61
Query: 97 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 156
++AL++QA+K+TL+SRAF++D+ + E++ + G DMVLPMNTGAE VETA+K AR+W
Sbjct: 62 IQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWA 121
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 216
Y K ++A I++C G FHGRT+AA+S+S + E RGFGP+LPG K+ +GD+ AL+
Sbjct: 122 YDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKA 181
Query: 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276
A FL EPIQGEAG+ IPP+G+LKA R+LC + N+L IADEIQ+GL R+G++
Sbjct: 182 AITP---NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKL 238
Query: 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 336
A DW+ V PDM ILGKALGGGV P+S V A+++++ PG HGSTFGGNPLA AV+IA
Sbjct: 239 FACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIA 298
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 396
+L+V+ +EKL ERS LGE ++ L +I P +KEVRGRGLF VE ++ A P
Sbjct: 299 ALEVLEEEKLPERSLELGEYFKEQLKEI--DNPM-IKEVRGRGLFIGVELNEPARP---- 351
Query: 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
C +KE G+L K TH+T++R PPL I+ EL + + VL
Sbjct: 352 -YCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVLS 396
|
Length = 396 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 507 bits (1309), Expect = e-179
Identities = 172/414 (41%), Positives = 242/414 (58%), Gaps = 14/414 (3%)
Query: 35 SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHP 94
+ + I L +Y Y +P+V + +G+ +WD +G +YLDF + + N GHCHP
Sbjct: 2 MTELTAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHP 61
Query: 95 KIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLAR 153
+++AL+EQAEKL S FYN+ AE+L + D V N+GAE E ALKLAR
Sbjct: 62 ALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLAR 121
Query: 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213
K+ +K I++ FHGRTL A+S + + +GFGPLLPG V F DI A
Sbjct: 122 KYTGDPEKS-----KIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEA 176
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
LE + A + EPIQGE GVI P +LKA+R+LC ++ L+I DE+Q+GL R+
Sbjct: 177 LEAAI---DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRT 233
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAV 333
G++ A + V PD++ L KALGGG P+ A+LA +E+ PG+HGSTFGGNPLA AV
Sbjct: 234 GKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFTPGDHGSTFGGNPLACAV 292
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393
A+A L+V+ +E L E GE L Q L ++++++P VKEVRGRGL +E + P
Sbjct: 293 ALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPL-VKEVRGRGLMIGIELKE---PY 348
Query: 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447
A DI ++E G+L P ++R PPL I+ E+ E AL L +
Sbjct: 349 RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASAR 402
|
Length = 404 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 464 bits (1195), Expect = e-162
Identities = 201/407 (49%), Positives = 263/407 (64%), Gaps = 8/407 (1%)
Query: 35 SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHP 94
++S+ LI E AHNY P+ +V ++ +G +WD +GN+YLD LSAYSAVNQGHCHP
Sbjct: 1 PMNTSEDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHP 60
Query: 95 KIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARK 154
KI+ A+ EQA +LTL+SRAF ND+ E L ++ G VLPMN+GAE VETA+K RK
Sbjct: 61 KILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRK 120
Query: 155 WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 214
WGY K +A I+ C FHGRTL+ + S D +A GFGP PG V FGD AL
Sbjct: 121 WGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEAL 180
Query: 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
E FL EPIQGEAGVIIPP GY VR+LC+ N+ +I DEIQ+GL R+G
Sbjct: 181 EAAITP---NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG 237
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 334
++LA + E + D+ ++GKAL GG PVSAVL++ EV+ ++PG+HGSTFGGNPLA AVA
Sbjct: 238 KLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVA 297
Query: 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 394
A+L V+ +E + E +A +G + L I+ N V+EVRGRGL AVE + A
Sbjct: 298 RAALKVLTEEGMIENAAEMGAYFLEGLRSIRS---NIVREVRGRGLMLAVELEPEAGGAR 354
Query: 395 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
Y C +KERG+LAK THD +RL PPL I+ ++ + + VL
Sbjct: 355 QY--CEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVL 399
|
Length = 401 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 462 bits (1191), Expect = e-161
Identities = 182/423 (43%), Positives = 256/423 (60%), Gaps = 33/423 (7%)
Query: 42 LINLEYEYSAHNY--HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
L + + H Y P P+V +A+G+ ++D +GN+YLDFLS +N GH HP++++A
Sbjct: 1 LFERDRKVLWHGYTVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEA 60
Query: 100 LQEQAEKLTLSSRAFYNDKFPV-FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWG 156
L+EQ KLT S F+ ++ V AE L ++ G D V +N+G E VE ALKLAR +
Sbjct: 61 LKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYT 120
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG------- 209
+KK I+S G +HGRTL A+S++ + GFGPLLPG L V +
Sbjct: 121 G-RKK-------IISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPA 172
Query: 210 ----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265
D+ ALE+ +E +++A + EPIQGE GVI+PP GYLKA+R+LC K+ IL+IADE
Sbjct: 173 ELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADE 232
Query: 266 IQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPGEHGST 323
+Q+G R+G+M A + V PD+V LGK LGGG+ P+ AVL +E+M PG HG T
Sbjct: 233 VQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGL-PLGAVLGREEIMDAFPAGPGLHGGT 291
Query: 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383
FGGNPLA A A+A L+V+ +E L E +A LGE LR+ L ++ ++ P V +VRGRGL
Sbjct: 292 FGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPL-VGDVRGRGLMIG 350
Query: 384 VEFD-----KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438
+E K A I ERG+L +P+ ++RL PPL I+ E+ EG AL
Sbjct: 351 IELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALD 410
Query: 439 DVL 441
+ L
Sbjct: 411 EAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 421 bits (1086), Expect = e-146
Identities = 171/407 (42%), Positives = 250/407 (61%), Gaps = 15/407 (3%)
Query: 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKI 96
+S+ +I LE +Y + Y +PI F + +G+ +WD +G +YLDFL+ + N GHCHPK+
Sbjct: 1 MTSEAIIELEKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKL 60
Query: 97 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 156
++A+QEQA KL +S +Y + AE+L + G D V N+GAE E A+KLARK+G
Sbjct: 61 VEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYG 120
Query: 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALE 215
K I++ I++ FHGRTLA +S + + GF PL+ G + V F DI AL+
Sbjct: 121 ---HKKGIEKPEIITAENSFHGRTLATLSAT-GQPKYQEGFEPLVEGFIYVPFNDIEALK 176
Query: 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 275
D+ A + EPIQGE GV YL+A+R+LC + IL+I DE+Q+G+ R+G+
Sbjct: 177 AAI---TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK 233
Query: 276 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 335
+ A + PD++ L K LGGGV P+ AVLA ++V PG+HGSTFGGNPLA A A+
Sbjct: 234 LFAYQHYGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAAL 292
Query: 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 395
A +++I +E L E +A +GE LR L ++ +++P +KEVRG GL +E D+ A
Sbjct: 293 AVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPG-IKEVRGLGLMIGIELDRPAA---- 347
Query: 396 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+I K E+G+L T D ++RL PPL IS E+ E L +VL+
Sbjct: 348 -EIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLK 393
|
Length = 396 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 389 bits (1001), Expect = e-134
Identities = 151/339 (44%), Positives = 215/339 (63%), Gaps = 19/339 (5%)
Query: 64 AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYNDKFPVF 122
AKG ++D +G +YLDFLS + VN GHCHPKI++A++EQA+KLT +S RAF +
Sbjct: 5 AKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQL 64
Query: 123 AERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 180
AE+L + G D V MN+G+E ETA+KLAR++ KKK + + I++ G FHGRT
Sbjct: 65 AEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYA--KKKGATGKTKIIAFSGGFHGRT 122
Query: 181 LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK-----------IFKESGDQIAGFL 229
L A+S++ + +GFGP LPG + + D+ A E+ I D IA +
Sbjct: 123 LGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAVI 182
Query: 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV 289
EPIQGE GV+ PP G+L +R++C K+ +L+IADE+Q+G R+G++ A + V PD++
Sbjct: 183 VEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIM 242
Query: 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349
L KAL GG +P+SAVLA E+M PG HG TFGGNPLA A A+A LD+I DE L +
Sbjct: 243 TLAKALTGG-LPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQN 301
Query: 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388
+ G+ LR+ L +Q + + +VRG+GL A+E K
Sbjct: 302 AQEKGDYLRKGLLALQDK--PVIGDVRGKGLMIAIEIVK 338
|
Length = 338 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-129
Identities = 171/450 (38%), Positives = 256/450 (56%), Gaps = 45/450 (10%)
Query: 27 QPQGGTSPSSSSSQQLINLEYEYSAHNY--HPVPIVFSQAKGSSIWDPEGNKYLDFLSAY 84
+P T + +LI E A +Y P+V +A+G+ ++D +GN+YLDFLS
Sbjct: 6 EPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGI 65
Query: 85 SAVNQGHCHPKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNT 140
+ +N GH HP++++A++ Q KL +R Y + + AE+LT++ G V N+
Sbjct: 66 AVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNS 125
Query: 141 GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPL 199
GAE VE A+K+AR + + + ++ G FHGRTL A+S++ + GFGPL
Sbjct: 126 GAEAVEAAIKIARAY---TGRPGV-----IAFDGAFHGRTLGALSLTGSKPPYKAGFGPL 177
Query: 200 LPGHLKVDFGD-----------------ITALEK-IFK--ESGDQIAGFLFEPIQGEAGV 239
PG V + + + +E+ +F +++A + EPIQGE G+
Sbjct: 178 PPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGI 237
Query: 240 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 299
I+PP G+LKA+R LC ++ IL+IADE+Q+G R+G+M A + V PD+V L K+LGGG
Sbjct: 238 IVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG- 296
Query: 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359
+P+SAV+ E+M PG HG TFGGNP+A A A+A LDVI +E L ER+A LGE LR
Sbjct: 297 LPLSAVVGRAEIMDW-PPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRD 355
Query: 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALPVSAY--DICLKMKERG--ILAKPT 412
L ++Q++ P + +VRG GL VE K T P + I + ERG +L
Sbjct: 356 RLEELQEKHP-LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGP 414
Query: 413 HDTIVRLTPPLSISSNELQEGSKALHDVLE 442
H ++R+ PPL+IS EL EG L + L+
Sbjct: 415 HGNVLRILPPLTISDEELDEGLDILEEALK 444
|
Length = 447 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 340 bits (874), Expect = e-114
Identities = 148/389 (38%), Positives = 221/389 (56%), Gaps = 14/389 (3%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112
Y +P+ + KG+ ++D G +YLDF++ + + GH HPK+++AL+EQ EKL S
Sbjct: 5 TYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSN 64
Query: 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
+Y + AE+L G D V N+GAE E ALKLARK+ K K ++ I++
Sbjct: 65 LYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGK---EKKKIIAF 121
Query: 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232
FHGRT+ A+S + + +GF PL+PG + DI +L+K D+ A + EP
Sbjct: 122 ENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID---DETAAVIVEP 178
Query: 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292
IQGE GV +LKA+R++C + L+I DE+Q+G+ R+G+ A + + PD++ L
Sbjct: 179 IQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLA 238
Query: 293 KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 352
K LGGGV P+ A LA +EV PG+HGSTFGGNPLA A A+A L+VI E+L E
Sbjct: 239 KGLGGGV-PIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKE 297
Query: 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412
G+ ++ L ++ + KEVRG+GL +E + DI K E+G+L
Sbjct: 298 KGDYFKERLEELGK--NYPNKEVRGKGLMLGIELEAPCK-----DIVKKALEKGLLVNCA 350
Query: 413 HDTIVRLTPPLSISSNELQEGSKALHDVL 441
++R PPL I+ E+ E AL + +
Sbjct: 351 GPKVLRFLPPLIITKEEIDEAVSALEEAI 379
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-105
Identities = 145/445 (32%), Positives = 240/445 (53%), Gaps = 42/445 (9%)
Query: 28 PQGGTSPSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSA 86
P+ ++++I + +Y A + P+V + +G + D +GN YLDF + +
Sbjct: 6 PRIVVELPGPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAV 65
Query: 87 VNQGHCHPKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYDM---VLPMNTGA 142
N GH HPK++KA++EQAEK S FY + AERL + V N+G
Sbjct: 66 TNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGT 125
Query: 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLP 201
E E A+K+AR + +K+ I++ G FHGRT ++S++ R GF PL+P
Sbjct: 126 ESNEAAIKIAR--YHTGRKY------IIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMP 177
Query: 202 GHLKVDFGD------------------ITALE-KIFKE--SGDQIAGFLFEPIQGEAGVI 240
G + V + + + +E +FK+ +++A + EPIQGE G +
Sbjct: 178 GVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYV 237
Query: 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300
+PP + K +R L KY IL+I DE+Q+G+ R+G+M A + V PD++ L KA+ GG +
Sbjct: 238 VPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-L 296
Query: 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 360
P+ AV+ E+M + PG H +TFGGNP+A+A A+A+L+ + +E L E + LGE LR+
Sbjct: 297 PLGAVIGRAELMF-LPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYLRKE 354
Query: 361 LFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPVSAYDICLKMKERGILAKPTHDTIV 417
L ++++++ ++ +VRG GL VE K P + + +RG+L + +
Sbjct: 355 LKELKEKYE-FIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAI 413
Query: 418 RLTPPLSISSNELQEGSKALHDVLE 442
R+ PPL I+ E G + L + ++
Sbjct: 414 RIIPPLIITEEEADIGLEILEEAIK 438
|
Length = 441 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 309 bits (793), Expect = e-101
Identities = 152/397 (38%), Positives = 223/397 (56%), Gaps = 25/397 (6%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112
Y+ + F + +G + D +G +YLDF S + + GH HP +++AL+EQAEKL S
Sbjct: 9 VYNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSN 68
Query: 113 AFYNDKFPV---FAERLT-SMFGYDMVLPMNTGAEGVETALKLARKWGYVK---KKFSID 165
+ + P AERL + F D V N+GAE VE A+K AR++ Y K +++ I
Sbjct: 69 LY---RIPEQERLAERLVENSFA-DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRI- 123
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
++ G FHGRTLA I+ + + GFGPL+PG +V FGDI AL+
Sbjct: 124 ----ITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKA---AITPNT 176
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A L EPIQGE G+ PD +LK +R LC + +L+I DE+Q G+ R+G++ A +W V
Sbjct: 177 AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVT 236
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD++ + K +GGG P+ A LA +E + PG HGST+GGNPLA AV A LDVI
Sbjct: 237 PDIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPG 295
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
+ +G L+Q L + +FP+ ++EVRG+GL ++ V D+ +++
Sbjct: 296 FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLK-----CVVPNRDLVQALRDE 350
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
G+L D +VRL PPL I+ E+ E + L E
Sbjct: 351 GLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAE 387
|
Length = 389 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (769), Expect = 6e-98
Identities = 148/396 (37%), Positives = 204/396 (51%), Gaps = 27/396 (6%)
Query: 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLS 110
+NY P+ + +G+ +WD +G +YLD L AVN GH HP +++A+ Q L
Sbjct: 20 NNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGI-AVNALGHAHPAVVEAVTRQLATLGHV 78
Query: 111 SRAFYNDKFPVFAERLTSMFGYDM---VLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167
S F + AERL + G V N+GAE E A KLAR G K
Sbjct: 79 SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTK-------- 130
Query: 168 IIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226
IV+ G FHGRT+ A++++ A R F PL G V +GD+ AL D A
Sbjct: 131 -IVAAEGGFHGRTMGALALT-GQPAKRAPFEPLPGGVEHVPYGDVDALAAAV---DDDTA 185
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 286
EPIQGEAGV+ PP GYL A R++ ++ L++ DE+Q+G+ R+G A + V P
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTP 245
Query: 287 DMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346
D+V L K LGGG +P+ A LA + PG HGSTFGGNP+A A A+A LD I E L
Sbjct: 246 DVVTLAKGLGGG-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGL 304
Query: 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 406
E + LGE+LR + + V VRGRGL + PV+ + +E G
Sbjct: 305 LENAERLGEQLRAGIEALGHPL---VDHVRGRGLLLGIVLTA---PVAK-AVEAAAREAG 357
Query: 407 ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
L ++RL PPL I+ ++ AL +L+
Sbjct: 358 FLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILD 393
|
Length = 398 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 4e-97
Identities = 147/436 (33%), Positives = 219/436 (50%), Gaps = 52/436 (11%)
Query: 49 YSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107
++ P V +A+G + D +G +YLD +S VN GH P+I +A+++Q +KL
Sbjct: 17 FTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKL 76
Query: 108 TLSSRAFYNDKFPVF--AERLTSMF---GYDMVLPMNTGAEGVETALKLARKW----GYV 158
+ + P AE+L + G D V ++G+E VETALK+A ++ G
Sbjct: 77 PHVMFGGFTHE-PAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQP 135
Query: 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR--GFGPLLPGHLKVDF-------- 208
++K +S +HG TL A+S+ A+R + PLLP L +
Sbjct: 136 QRK------KFISRRNGYHGDTLGAMSV-GGPVALRHAFYDPLLPEVLHLPAPYAYRRGF 188
Query: 209 ---------GDITALEKIFKESG-DQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKY 257
LE + E G + IA F+ EP+ G G+++PP GYLK VR++C KY
Sbjct: 189 FGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY 248
Query: 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 317
IL+IADE+ +G R+G+M A + + PD++ L K L GG +P+SAVL +
Sbjct: 249 GILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSD 308
Query: 318 GE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYV 372
G+ HG T+ GNPLA A A+A+LD++ +E L ER A +G L+ L P V
Sbjct: 309 GDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHP-LV 367
Query: 373 KEVRGRGLFNAVEF-----DKTALPVSAYD-ICLKMKERGILAKPTHDTIVRLTPPLSIS 426
+VRG GL A+E KT + ERG+L +P D I L PPL I+
Sbjct: 368 GDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDVIY-LMPPLIIT 426
Query: 427 SNELQEGSKALHDVLE 442
E+ E AL + L+
Sbjct: 427 REEIDELVDALREALD 442
|
Length = 449 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 4e-93
Identities = 141/408 (34%), Positives = 230/408 (56%), Gaps = 18/408 (4%)
Query: 45 LEYEYSAHNYHPVPIVFSQAKGSSIW-DPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ 103
LEY S V QA G + D +G +++D L + N GH +P ++ A+Q Q
Sbjct: 51 LEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQ 110
Query: 104 AEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPM--NTGAEGVETALKLARKWGYVKKK 161
K L S+ + + A+ L ++ + N+G E VE ALKLA+ + + K
Sbjct: 111 LAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGK 170
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE- 220
F+ ++ G FHG++L A+S + + + F PLLPG V FG+I A+ E
Sbjct: 171 FTF-----IATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSEC 225
Query: 221 --SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+GD +A + EPIQGE GVI+PP+GYL AVR LC ++ L+I DE+Q+G+ R+G+M A
Sbjct: 226 KKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFA 285
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPGEHGSTFGGNPLASAVAIA 336
+ E V+PD++ L KALGGGV+P+ A +A +EV + P H +TFGGNPLA A A+A
Sbjct: 286 CEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALA 345
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 396
+++V+ ++ L ++ G+ L ++ +++P+ V+E RG+G+ A+EF + Y
Sbjct: 346 TINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEI---GY 402
Query: 397 DICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ +M + +L T + +R+ PPL+++ + ++ KA L
Sbjct: 403 NFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALA 450
|
Length = 459 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 4e-91
Identities = 142/424 (33%), Positives = 229/424 (54%), Gaps = 47/424 (11%)
Query: 50 SAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
+ HP +P+V + +G + +G +YLDF S + N GH HPK+++A++EQA+KL
Sbjct: 19 ALAKDHPNLPVV--KGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLM 76
Query: 109 -LSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
S Y + AE L + G D N+GAE +E ALKLA+ +V K+
Sbjct: 77 HGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAK---HVTKR---- 129
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD-------------- 210
I+S GCFHGRTL A+S++ R + PLL + +
Sbjct: 130 -PYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCF 188
Query: 211 ---ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265
+ LE +FK + +++A + EP+ GE G I+PP +LK +R++C ++ IL+I DE
Sbjct: 189 LECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDE 248
Query: 266 IQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG 325
+Q+G R+G A+ V PD++ + K + G +P+SAV+A KE+M G HG+TFG
Sbjct: 249 VQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWPLGSHGTTFG 307
Query: 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385
GNP+A A A+A+L+VI++EKL + + +G + L ++++ P + +VRG GL +E
Sbjct: 308 GNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHP-VIGDVRGIGLMIGIE 366
Query: 386 F-DKTALPVSAYDICLKMK----ERGIL---AKPTHDTIVRLTPPLSISSNELQEGSKAL 437
D P D K+ E+G+L + ++R+ PPL+++ E+ EG L
Sbjct: 367 IVDPDGEP--DGDAVEKILDKCLEKGLLFYLCGNAGN-VLRMIPPLTVTKEEIDEGLDIL 423
Query: 438 HDVL 441
+ L
Sbjct: 424 DEAL 427
|
Length = 433 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 6e-91
Identities = 145/393 (36%), Positives = 208/393 (52%), Gaps = 26/393 (6%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112
Y PI + KG+ + D G YLDF S + N GHCHP + KA+QEQ + + S
Sbjct: 7 TYGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSN 66
Query: 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
F N A L D+V N+GAE E ALKLARK + K + IV+
Sbjct: 67 LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARK--HTGK------SKIVTF 118
Query: 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232
FHGRT +S + + GFGPLLPG V F DI AL+++ E ++A + E
Sbjct: 119 EQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNE---EVAAVMLEV 175
Query: 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292
+QGE GVI +L+ V+ LC K+ L+I DE+Q+G+ R+G + A + + PD+V +
Sbjct: 176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVA 235
Query: 293 KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAE 348
K LG G IPV A++ KE+ PG HGSTFGGNPLA A A L VI+ E++ E
Sbjct: 236 KGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQE 294
Query: 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408
+ + ++L++ L + VK +RG+GL +E + PV +++E G+L
Sbjct: 295 KGEYFLQKLQEEL----EHLEC-VKNIRGKGLMIGIECTEEVAPVIE-----QLREEGLL 344
Query: 409 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
++RL PPL ++ EL + L VL
Sbjct: 345 VLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377
|
Length = 377 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 8e-90
Identities = 137/394 (34%), Positives = 202/394 (51%), Gaps = 14/394 (3%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLSS 111
NY P + + +GS +WD +G +Y+DF + AV GHCHP ++KAL+EQ EKL S
Sbjct: 18 NYAPAEFIPVRGEGSRVWDQQGKEYIDF-AGGIAVTALGHCHPALVKALKEQGEKLWHIS 76
Query: 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
F N+ A++L + V N+GAE E A KLAR++ + ++ I++
Sbjct: 77 NVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYAC--DRHGPEKTEIIA 134
Query: 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231
FHGRTL +S+ + GFGP V F D+ A++ + D + E
Sbjct: 135 FHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVI---DDHTCAVVVE 191
Query: 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291
PIQGE GVI +L+ +R+LC ++N L+I DE+Q+G+ R+G + A V PD++
Sbjct: 192 PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTS 251
Query: 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA 351
KALGGG P+ A+L E+ + G HGST+GGNPLA AVA A D+I ++ E
Sbjct: 252 AKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVK 310
Query: 352 HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 411
+ L KI Q++ E+RG GL E K A D E G++
Sbjct: 311 ARRQRFVDGLQKINQKY-GVFSEIRGMGLLIGAEL-KPQYKGRARDFLNAAAEEGVMVLV 368
Query: 412 THDTIVRLTPPLSISSNELQEG----SKALHDVL 441
++R P L I ++ EG KA+ V+
Sbjct: 369 AGPDVLRFAPSLVIEEADIDEGLARFEKAVAKVV 402
|
Length = 403 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 7e-86
Identities = 130/431 (30%), Positives = 210/431 (48%), Gaps = 55/431 (12%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL- 107
Y+ P+ +A+G ++D +G +Y+D +S++ GH HP+I A++EQ +KL
Sbjct: 5 YTQMKDALPPLPIERAEGVYLYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLE 64
Query: 108 --TLSSRAFYNDKFPV--FAERLTSMF--GYDMVLPMNTGAEGVETALKLA--------R 153
++ P AERL + G + V ++G+ VE ALK+A R
Sbjct: 65 HVMFGG--LTHE--PAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGR 120
Query: 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKVDFGD-- 210
K +F ++ +HG T A+S+ D F PLL + +
Sbjct: 121 P---GKTRF-------LAFRNGYHGDTFGAMSV-GDVGGFHALFEPLLFEVVFIPAPPCY 169
Query: 211 ------------ITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKY 257
+ ALE + +E D+IA F+ EP+ QG G+ P YL+ +R+LC +Y
Sbjct: 170 RCWDPDDCEAECLAALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEY 229
Query: 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 317
+L+IADEI +G R+G++ A + V PD++ L K L GG +P++A L E+
Sbjct: 230 GVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYS 289
Query: 318 GE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 371
+ HG T+ GNPLA A A+ASLD++ +E E+ A + +LR L ++
Sbjct: 290 DDEGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPLRD--HPG 347
Query: 372 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQ 431
V +VR G AVE + P I ERG+L +P + I L PP I+ EL+
Sbjct: 348 VADVRVLGAIGAVELVRDVEPYIGAKIQQFFLERGVLLRPLGNVIY-LMPPYIITDEELE 406
Query: 432 EGSKALHDVLE 442
+ + A+ + ++
Sbjct: 407 KLTAAIKEAID 417
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 2e-83
Identities = 145/407 (35%), Positives = 230/407 (56%), Gaps = 18/407 (4%)
Query: 45 LEYEYSAHNYHPVPIVFSQAKG-SSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ 103
LEY S V QA G +++ D +GN+++D L + N GH +P ++ A++ Q
Sbjct: 44 LEYRKSVTAGGDYGAVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQ 103
Query: 104 AEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPM--NTGAEGVETALKLARKWGYVKKK 161
K L S+ + + A+ L ++ + N+G E VE ALKLA+ + + K
Sbjct: 104 LAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGK 163
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE- 220
F+ ++ G FHG++L A+S + + F PLLPG V FGDI A+ K E
Sbjct: 164 FTF-----IAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNEC 218
Query: 221 --SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+GD +A + EPIQGE GVI+PP+GYL AVR LC ++ L+I DE+Q+G+ R+G+M A
Sbjct: 219 KKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFA 278
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPGEHGSTFGGNPLASAVAIA 336
+ E V+PD++ L KALGGGV+P+ A +A + V +L P H +TFGGNPLA A A+A
Sbjct: 279 CEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALA 338
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 396
+++ + ++ L ++A G+ L ++ ++P+ + E RG+GL A+EF + Y
Sbjct: 339 TINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNEI---GY 395
Query: 397 DICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVL 441
++ ++ IL T + +R+ PPL+I+ + KA D L
Sbjct: 396 AFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 4e-83
Identities = 142/416 (34%), Positives = 225/416 (54%), Gaps = 37/416 (8%)
Query: 59 IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYND 117
I +A+ + IWD EG +Y+DF + + VN GH HP+++ A++ Q ++ T + + +
Sbjct: 24 IYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYE 83
Query: 118 KFPVFAERLTSMFGYDMV---LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
+ AERL ++ D + + TGAE VE A+K+AR + + +++ G
Sbjct: 84 NYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARA--------ATGRSAVIAFGG 135
Query: 175 CFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDF----------GDITALEKIFKESGD 223
FHGRT +S++ + GFG ++P V F + AL+K+FK D
Sbjct: 136 GFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD 195
Query: 224 --QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 281
++A + EP+QGE G P ++KA+R+LC ++ IL+IADE+Q+G AR+G++ A +
Sbjct: 196 PQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEH 255
Query: 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 341
EV D+ + K L GG P++AV E+M PG G T+GGNPL A A A LDVI
Sbjct: 256 HEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVI 314
Query: 342 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD--KTALPVS--AYD 397
+E L ER+ LG L+Q L +++ P ++RG G NAVEF+ + LP + A
Sbjct: 315 EEEDLCERANQLGNRLKQRLASLRETVPEIA-DIRGPGFMNAVEFNDADSGLPSAEFANR 373
Query: 398 ICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP 451
+ LK E+G +L H ++R P++I + E AL D+LE + +
Sbjct: 374 VRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAE---AL-DILEASILEASAA 425
|
Length = 425 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 5e-82
Identities = 133/386 (34%), Positives = 202/386 (52%), Gaps = 8/386 (2%)
Query: 48 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107
+ NY P P + + +GS +WD +G +Y+DF + GH HP+++KAL EQA+KL
Sbjct: 8 QVMVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKL 67
Query: 108 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167
+ N+ A++L D V N+GAE E ALKLAR++ K D++
Sbjct: 68 WHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYAL--DKHGADKS 125
Query: 168 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227
IV+ FHGRTL +S+ + +GF PL G + D+ A + + D+
Sbjct: 126 EIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALI---SDKTCA 182
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
+ EPIQGE GV+ +LK +R+LC ++N L+I DE+Q+G+ R+G + A V PD
Sbjct: 183 VIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 242
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347
++ KALGGG P+ A+L E+ ++ G HG+T+GGNPLA AVA LD++ +L
Sbjct: 243 ILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELL 301
Query: 348 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI 407
+ L KI ++ N E+RG+GL + A A E G+
Sbjct: 302 AGVKQRHDLFVDGLEKINARY-NVFSEIRGKGLLIGAVLTE-AYQGKAKQFVNAAAEEGV 359
Query: 408 LAKPTHDTIVRLTPPLSISSNELQEG 433
+A +VR P L IS +++ EG
Sbjct: 360 IALIAGPNVVRFAPSLVISDDDIDEG 385
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 9e-82
Identities = 142/389 (36%), Positives = 202/389 (51%), Gaps = 17/389 (4%)
Query: 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119
F KG ++D EG +YLD +A AVN GH P +KA+ EQA L S ++
Sbjct: 1 FVSGKGCKLYDVEGKEYLDM-AAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQ 59
Query: 120 PVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII-----VSCCG 174
A+RL + D V N+G E E A+K ARK+ V+ D A VS
Sbjct: 60 VELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSN 119
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQ 234
FHGRTL A++++ + F PL+PG V++G++ A K+ ++ + A EP+Q
Sbjct: 120 SFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQK--GKTAAVFVEPVQ 177
Query: 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKA 294
GE G+ +L+ +R LC + L++ DE+Q GL R+G + A + V PD++ L K
Sbjct: 178 GEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKP 237
Query: 295 LGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLG 354
L GG +P+ AVL ++V I PG+HGSTF G PL A+A LD I A G
Sbjct: 238 LAGG-LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKG 296
Query: 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA-KPTH 413
E LR+ L + P +VKEVRG GL ++ D A P+ D C + G+L
Sbjct: 297 EYLRELLRRKLGGNP-HVKEVRGVGLLVGIQLDVPAGPL--VDACR---DSGLLVLTAGK 350
Query: 414 DTIVRLTPPLSISSNELQEGSKALHDVLE 442
+VRL PPL IS EL++ + L D L
Sbjct: 351 GDVVRLVPPLVISEAELEQAVEILADCLP 379
|
Length = 382 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 1e-79
Identities = 136/402 (33%), Positives = 214/402 (53%), Gaps = 20/402 (4%)
Query: 48 EYSAHNYHPV-------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKA 99
++ + + IVF+ KGS ++D G +YLDF+ + AVN GHC+P +++A
Sbjct: 2 PFNDYPIDSLMYITNRPDIVFTHGKGSWLYDHNGKRYLDFIQGW-AVNCLGHCNPGMVEA 60
Query: 100 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 159
L QAEKL S AFYN+ A LT +D V N+GAE E A+KLARKWG
Sbjct: 61 LAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKH 120
Query: 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219
K + + I++ FHGRTLA +S S F P +PG K + DI ++EK+
Sbjct: 121 KNGAYE---IITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLI- 176
Query: 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS 279
D+ + EP+QGE GVI +++ +R L ++ +L+I DE+Q+G R+G + A
Sbjct: 177 --TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAY 234
Query: 280 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339
+ + PD++ LGK +GGGV P++A+LA EV + G+ G T+ GNPL +AV +A +
Sbjct: 235 ELSGIEPDIMTLGKGIGGGV-PLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVIS 292
Query: 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 399
+ E GE L++ L ++ ++ ++ RG GL A+ K P +
Sbjct: 293 QLLAPGFLEGVRARGEYLKEKLLELSEERG--LEGERGEGLLRALLLGKDIGP-QIVEKA 349
Query: 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
M+ G+L ++R P L++++ E+ + L VL
Sbjct: 350 RDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVL 391
|
Length = 395 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (641), Expect = 6e-79
Identities = 152/405 (37%), Positives = 220/405 (54%), Gaps = 12/405 (2%)
Query: 36 SSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPK 95
S+++ ++L + Y Y P +V + +GS +WD +G +YLD + + GH P
Sbjct: 2 SAAADSPLSLAH-YYLPVYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPD 60
Query: 96 IMKALQEQAEKLTLSSRAFYNDKFPVFAERL--TSMFGYDMVLPMNTGAEGVETALKLAR 153
++ AL EQA KL +S FY+ AE L S F + L N+G E E A+KL R
Sbjct: 61 LVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFL-CNSGTEANEAAIKLVR 119
Query: 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213
KW + + + D+ +IV+ G FHGRTLAA++ + + G+ PL G VDF D+ A
Sbjct: 120 KWASSQGRPA-DKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEA 178
Query: 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
LE GD +A + EPIQGE GV+ G+L VR LC +++ L++ DEIQ G+ R+
Sbjct: 179 LEAAMA-GGD-VAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRT 236
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAV 333
G + A E+V PD+V L KALGGG P+ A+LA +V +Q G HG+TFGGNPLA+AV
Sbjct: 237 GTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAV 295
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTALP 392
A +L + ++A A LR L + +F + +VRGRGL AV A
Sbjct: 296 ARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVF-AQVRGRGLMLGAVLAPAHAGQ 354
Query: 393 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437
A I E G+L ++R P L+++ EL +G L
Sbjct: 355 AGA--ILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARL 397
|
Length = 408 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 3e-78
Identities = 128/456 (28%), Positives = 218/456 (47%), Gaps = 63/456 (13%)
Query: 37 SSSQQLINLEYEYSAH----NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHC 92
S + QLI + Y A Y+P +V G+++ D +G Y+D L++ S+ N GH
Sbjct: 2 SKAHQLIQEDEHYFAKSGRIKYYP--LVIDHGYGATLTDVDGKTYIDLLASASSQNVGHA 59
Query: 93 HPKIMKALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETA 148
P++++A++ QA+K + A Y++ A++L + V +G++ +
Sbjct: 60 PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGI 119
Query: 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI-----RGFGPLLPGH 203
+K AR Y + + I+S +HG T ++SMS I R +GPLLPG
Sbjct: 120 IKFAR--AYTGRPY------IISFTNAYHGSTYGSLSMS----GISLNMRRKYGPLLPGF 167
Query: 204 LKVDFGDITALEKIFKES---------------------GDQIAGFLFEPIQGEAGVIIP 242
+ + F D +++E D++A + E IQG+ G++ P
Sbjct: 168 VHIPFPDKY--RGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEP 225
Query: 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPV 302
GY +A+ C ++ IL D+IQ GL R+G+ + + PD++ GK+L GG +P+
Sbjct: 226 VPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MPM 284
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
SA++ KE+M ++ H T G NP++ A A+A++D+I DE L +RSA GE R+
Sbjct: 285 SAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFD 344
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVSAYDICLKMKERGILAKPTHDTIV 417
+ ++ +V +VRG GL ++ KT +A IC E G++ ++
Sbjct: 345 QWVSKYN-FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVL 403
Query: 418 RLTPPLSISSNELQEGSKALHDVLE------LDLPK 447
R PPL I+ +L + LD P
Sbjct: 404 RFQPPLVITYEQLDTALNTIEQAFTALEAGKLDQPD 439
|
Length = 445 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 7e-76
Identities = 122/415 (29%), Positives = 196/415 (47%), Gaps = 43/415 (10%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P+ ++A+G+ + D +GN+ +DF S + +N GH HP+++ A++ Q + T + F
Sbjct: 16 PVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHT--CFMVT 73
Query: 118 KFPVFAE------RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
+ + R+ G + N+GAE VE A+K+AR Y + +V+
Sbjct: 74 PYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARS--YTGRP------GVVA 125
Query: 172 CCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDF----------------GDITAL 214
FHGRT ++++ + GFGP P + G++ A
Sbjct: 126 FDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAA 185
Query: 215 EKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272
IF + +A + EP+QGE G I+P G++ A+ D C ++ I+ IADE+Q+G AR
Sbjct: 186 RAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245
Query: 273 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332
+G M A + E PD++ K+L G +P+S V E+M PG G T+ GNPLA A
Sbjct: 246 TGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACA 304
Query: 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392
A+A L +I E L ER+ +G + L ++ P + +VRG G AVE
Sbjct: 305 AALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDP-RIGDVRGLGAMIAVELVDPGTT 363
Query: 393 VSAYDICLKMKERG------ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
+ ++ +L I+R PPL+I L EG L +L
Sbjct: 364 EPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL 418
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 3e-75
Identities = 140/449 (31%), Positives = 230/449 (51%), Gaps = 54/449 (12%)
Query: 36 SSSSQQLINLEYEY---SAHNYHP------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSA 86
+ ++Q+ + N P +P A G+ + D +GN+Y+DF A
Sbjct: 6 AKVNEQIPGPKAASLLERRQNIVPKGVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGT 65
Query: 87 VNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVF---AERLTSMF--GYD-MVLPMNT 140
+N GH HPK+ +AL +Q ++ + F + + AE+L ++ +D VL +N+
Sbjct: 66 INVGHSHPKVKEALHKQVDQYIHT--GFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNS 123
Query: 141 GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPL 199
GAE VE A+K+ARK Y K++ I+S FHGRTL ++M+ + + GFGP
Sbjct: 124 GAEAVENAVKIARK--YTKRQ------GIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPF 175
Query: 200 LPGHLKVDFGD-----------------ITALEKIFKESGD--QIAGFLFEPIQGEAGVI 240
P K F I + F IA + EP+QGE G I
Sbjct: 176 APEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFI 235
Query: 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300
+P +++ VR++CS++ IL +ADEIQ+G AR+G+ A + +V PD++ + K+LG GV
Sbjct: 236 VPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGV- 294
Query: 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 360
P+S V+ KE+M PGE G T+ G+PL A A+A LD+I E L +R+ LG+ +
Sbjct: 295 PISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNR 354
Query: 361 LFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVSAYDICLKMKERG--ILAKPTH 413
+++ ++ + +VRG G A E K +IC + +RG +L+ T+
Sbjct: 355 FEEMKNKYN-CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTY 413
Query: 414 DTIVRLTPPLSISSNELQEGSKALHDVLE 442
++R+ PL I+ +L+EG + + L+
Sbjct: 414 GNVIRVLMPLVITDEQLEEGLTIIEESLQ 442
|
Length = 451 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 3e-73
Identities = 134/438 (30%), Positives = 226/438 (51%), Gaps = 63/438 (14%)
Query: 51 AHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110
A+ P+V +A+ + +WD EGN+Y+DFLS + N GH +P+++KA++EQ +KL
Sbjct: 17 ANRVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHY 76
Query: 111 SRAFYNDKFPV----FAERLTSMFGYDMVLPMN--------TGAEGVETALKLARKWGYV 158
+ + FPV AE+L + P + +G++ + A+K AR Y
Sbjct: 77 TPIY---GFPVEPLLLAEKLIE------IAPGDNPKVSFGLSGSDANDGAIKFAR--AYT 125
Query: 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPL-------LPGHLKVDFG- 209
K++ I+S ++G T A+S++ D G L P + FG
Sbjct: 126 KRR------KILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGK 179
Query: 210 -----DITALEKIFKES------GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258
+ +E I KE + +A EPIQG+AG+I+PP+ Y K ++ + ++
Sbjct: 180 EPGSCKMECVEYI-KEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHG 238
Query: 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 318
IL++ DE+QSGL R+G+ A + V PD++ LGK LGGG +P+SA + E+M + P
Sbjct: 239 ILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMDSLPPL 297
Query: 319 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378
H T GNP+ASA A+A ++ I ++ L +R+ LG ++ L +++++ + +VRG
Sbjct: 298 AHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHE-LIGDVRGI 356
Query: 379 GLFNAVEF--DKTALPVSAYD----ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
GL V+ D+ AY+ + + E G++ ++R+ PPL+I L E
Sbjct: 357 GLMIGVDLVKDRET-KERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDE 415
Query: 433 G----SKALHDVLELDLP 446
G +A+ DV E +P
Sbjct: 416 GLDILEEAIEDVEEGKVP 433
|
Length = 443 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 6e-73
Identities = 137/409 (33%), Positives = 223/409 (54%), Gaps = 58/409 (14%)
Query: 63 QAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-------------- 108
+A+ +++WD EG +Y+DF + + +N GH HPK++ A+++Q ++ T
Sbjct: 28 RAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVT 87
Query: 109 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168
L+ R N P+ T+ F TGAE VE A+K+AR Y +
Sbjct: 88 LAER--INALAPIDGPAKTAFF--------TTGAEAVENAVKIAR--AYTGRPG------ 129
Query: 169 IVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHL----------KVDFGD-ITALEK 216
+++ G FHGRTL ++++ + GFGP PG + V + ++++E+
Sbjct: 130 VIAFGGAFHGRTLLTMALTGKVAPYKVGFGPF-PGSIFHALYPNELHGVSVEEALSSVER 188
Query: 217 IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
+FK + DQ+A L EPIQGE G + P ++ A+R LC ++ IL+IADE+Q+G AR+G
Sbjct: 189 LFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG 248
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 334
++ A ++ +V+PD++ + K+LGGG +P+SAV+ EVM PG G T+ GNPLA A A
Sbjct: 249 KLFAMEYYDVKPDLITMAKSLGGG-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAA 307
Query: 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 394
+A LDVI +EKL +R+ LG L + L K + P + ++R RG AVEF+
Sbjct: 308 LAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCP-AIVDIRARGSMVAVEFNDPQTGKP 366
Query: 395 AYDICLKMKERG------ILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437
+ + + + + +L+ H ++R PL+I + SKAL
Sbjct: 367 SPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQF---SKAL 412
|
Length = 421 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 3e-72
Identities = 133/380 (35%), Positives = 202/380 (53%), Gaps = 34/380 (8%)
Query: 63 QAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVF 122
+ +G +WD +G +YLD ++ GH HP+ ++ + EQ EKL ++ F +++
Sbjct: 12 RGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEM 71
Query: 123 AERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182
E L+ Y+ V N+G E VE ALK AR + K+ I++ FHGRT+
Sbjct: 72 LEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKE--------IIAMTNAFHGRTMG 123
Query: 183 AISMSCDNEAIRGFGPLLPGHLKVDFGDITAL-EKIFKESGDQIAGFLFEPIQGEAGVII 241
A+S + + F PL+PG + F D+ A E I KE+ A +FEPIQGE G++
Sbjct: 124 ALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAITKET----AAVIFEPIQGEGGIVP 179
Query: 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 301
+ ++K +RDL L+IADE+QSGL R+G+ LA + +V PD+V +GK +G GV P
Sbjct: 180 AKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNGV-P 237
Query: 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 361
VS L + +V + G+HGSTFGGNPLA +L ++R E+L E++
Sbjct: 238 VSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGE--------- 284
Query: 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP 421
K + V RGRGL + K PV Y +++ RG L ++RL P
Sbjct: 285 -KFIEIKGERVVTTRGRGLMIGIVLKK---PVGKY--VEELQNRGYLVHTAGQRVIRLLP 338
Query: 422 PLSISSNELQEGSKALHDVL 441
PL IS + ++E A+ V+
Sbjct: 339 PLIISKDTMEEAKSAIEGVI 358
|
Length = 364 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 5e-71
Identities = 135/436 (30%), Positives = 217/436 (49%), Gaps = 59/436 (13%)
Query: 51 AHNYHP-------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ 103
AH +H P+V + A+GS +WD EG +YLDF S N GH HPK++ A+QEQ
Sbjct: 22 AHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQ 81
Query: 104 AEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLAR-KWGYVKK 160
A +L + A ND A + V N GA+ E A+++AR G K
Sbjct: 82 AARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPK- 140
Query: 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCD-----NEAIRG-----FGPLLPGHLKVDFGD 210
++S +HG T +AI+++ D N+ R FGP L + +F
Sbjct: 141 --------VLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFL---YRSEFHA 189
Query: 211 ITA----------LEKIFK-ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259
T LE++ + E IA L E + G AG+++PP GYL VR+LC ++ I
Sbjct: 190 TTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGI 249
Query: 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQP 317
++IADE+ +G R+G+ A + V PD++ K + G +P+ V + + +P
Sbjct: 250 VLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRP 309
Query: 318 GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE-LRQHLFKIQQQFPNYVKEVR 376
G T+ G+PLA A A+A+++ + +E + E +A +G E L L ++ ++ P+ V EVR
Sbjct: 310 YPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPS-VGEVR 368
Query: 377 GRGLFNAVEF---DKTALPVSAYDICLK--------MKERGILAKPTHDTIVRLTPPLSI 425
G G+F A+E +T P++ Y KERG+L + + + PP ++
Sbjct: 369 GLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPF-VNGNRIHVVPPCTV 427
Query: 426 SSNELQEGSKALHDVL 441
+ +E++EG L L
Sbjct: 428 TEDEVREGLAILDAAL 443
|
Length = 451 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 9e-70
Identities = 131/385 (34%), Positives = 195/385 (50%), Gaps = 18/385 (4%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLSSR 112
Y P P + + +GS +WD +G +Y+DF AVN GH HP + +AL EQA K +
Sbjct: 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGI-AVNALGHAHPALREALNEQASKFWHTGN 76
Query: 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
+ N+ A++L D V N+GAE E ALKLARK Y ++ ++ IV+
Sbjct: 77 GYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK--YAHDRYGSHKSGIVAF 134
Query: 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232
FHGRTL +S + + F PL P + D+ + + DQ + EP
Sbjct: 135 KNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID---DQTCAVIVEP 191
Query: 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292
IQGE GVI +L+ +R+LC ++N L+I DE+Q+G+ R+G + A V PD++
Sbjct: 192 IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTA 251
Query: 293 KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLA---E 348
KALGGG P+ A+L ++ + G HG+T+GGNPLASAVA L++I E L +
Sbjct: 252 KALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQ 310
Query: 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408
R E L I ++ + E+RG GL + A I + + G++
Sbjct: 311 RHDWFVERLNT----INARYGLF-SEIRGLGLLIGCVLNA-EYAGKAKQISQEAAKAGVM 364
Query: 409 AKPTHDTIVRLTPPLSISSNELQEG 433
+VR P L+IS E+ G
Sbjct: 365 VLIAGPNVVRFAPALNISEEEITTG 389
|
Length = 406 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 4e-67
Identities = 135/438 (30%), Positives = 216/438 (49%), Gaps = 54/438 (12%)
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FYNDK 118
V S KG ++D GNKY D S GH +I A++EQAE+++ R+ F ++
Sbjct: 16 VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEP 75
Query: 119 FPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 176
A++L+ + D+ +N+G+E ETA+K+A + + +++ + I+S +
Sbjct: 76 AEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQ--HFQERGIQGKHKILSRWMSY 133
Query: 177 HGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGD-------------ITALE 215
HG T+ A+SMS + F LL P + TA+E
Sbjct: 134 HGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIE 193
Query: 216 KIFKESGDQIAGFLFEPIQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
+I E IA F+ EPI G AG ++PP GY K ++++C Y+IL IADE+ +GL R+G
Sbjct: 194 RIGAE---HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTG 250
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH----GSTFGGNPLA 330
M A + V PD++ LGK LG G P++A + VM I G G T NPL+
Sbjct: 251 AMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLS 310
Query: 331 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---- 386
+A A+A L+ + L E++A GE L + L K+QQQ + +VRG+GL VEF
Sbjct: 311 AATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQST-IIGDVRGKGLLIGVEFVADK 369
Query: 387 -DKTALPVS---AYDICLKMKERGILAKPTHDTI-------VRLTPPLSISSNELQE--- 432
K S A ++ + G+L P V + PP++I+ +EL E
Sbjct: 370 KTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLS 429
Query: 433 -GSKALHDVLELDLPKMR 449
+K++ ++++ +
Sbjct: 430 IFAKSVEEMMQKGGHSIA 447
|
Length = 447 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (559), Expect = 2e-66
Identities = 126/432 (29%), Positives = 203/432 (46%), Gaps = 64/432 (14%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL- 107
Y+ HP PI +A+G+ ++ +G + +D +S++ GH HP I +A++EQ ++L
Sbjct: 16 YTQMKLHPPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLD 75
Query: 108 -------------TLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLA 152
L A+RL ++ G D V ++G+ VE ALK+A
Sbjct: 76 HVIFAGFTHEPAERL-------------AQRLVALTPGGLDHVFFSDSGSVAVEVALKMA 122
Query: 153 ----RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD----NEAIRGFGPLLPGHL 204
R G + +S G +HG T+ +S+ D + + PLL +
Sbjct: 123 LQYWRNRGEPGRSR------FLSLRGGYHGDTIGTMSV-GDRGGMHAL---YTPLLFEQV 172
Query: 205 KVDF-------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSK 256
F + ALE + ++ +IA F+ EP +QG G++ YL +R +C +
Sbjct: 173 TAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDR 232
Query: 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 316
+ +L+I DEI +G R+G + A + V PD++ L K L GG +P++A L E+
Sbjct: 233 HGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFY 292
Query: 317 PGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 370
+ H ++ NPLA A A ASLD+ DE + ER A L L + L + P
Sbjct: 293 SDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPF-RDLPG 351
Query: 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430
V +VR G AVE D+ L + ERG+L +P +TI L PP I++ EL
Sbjct: 352 -VADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLGNTIY-LMPPYIITAEEL 409
Query: 431 QEGSKALHDVLE 442
+ A+ +V +
Sbjct: 410 DRITDAIVEVAD 421
|
Length = 423 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 218 bits (559), Expect = 2e-66
Identities = 100/322 (31%), Positives = 160/322 (49%), Gaps = 40/322 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
PI + KG+ + D +GN+Y+D++ + + GH HP +++A+QEQ E+
Sbjct: 36 PIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGA----- 90
Query: 118 KFP-----VFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171
P AE L + V +N+G E +A++LAR Y + I+
Sbjct: 91 --PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLAR--AYTGRD------KIIK 140
Query: 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH--------LKVDFGDITALEKIFKESGD 223
GC+HG + + + + A G P PG L + + D+ ALE+ F+E GD
Sbjct: 141 FEGCYHGHSDSLLVKAGSGAATLG-SPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD 199
Query: 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDW 281
IA + EP+ G GV+ P G+L+ +R+L ++ L+I DE+ +G +A G A +
Sbjct: 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGG---AQGY 256
Query: 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASL 338
V PD+ LGK +GGG+ P+ A E+M + P T GNPLA A +A+L
Sbjct: 257 YGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATL 315
Query: 339 DVI-RDEKLAERSAHLGEELRQ 359
+ + +E + ER LGE L +
Sbjct: 316 EELMTEEGVYERLDALGERLAE 337
|
Length = 432 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 2e-65
Identities = 125/418 (29%), Positives = 207/418 (49%), Gaps = 51/418 (12%)
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLSSRAFYNDK 118
V + A+G I D +G KY+DF + V+Q G+ HP +++ ++EQ KL S R F N+
Sbjct: 57 VLASAEGIYIEDVDGKKYMDFHG--NNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNET 114
Query: 119 FPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 176
AE+LT + G ++ VL G + ALKLAR + F + VS F
Sbjct: 115 AIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARH---ITGNFKV-----VSLWDSF 166
Query: 177 HGRTLAAISMSCDNEAIRGFGPLLPGHLKV-------------DFGDITA---LEKIFKE 220
HG +L AIS+ + +G GPL+ G ++ D D+ LE + ++
Sbjct: 167 HGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK 226
Query: 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 280
G I F+ E ++ V +P Y K VR++C K+N+L+I DEI +G+ R+G
Sbjct: 227 EGG-IGAFIAEAVRN-TDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQ 284
Query: 281 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340
+ PD++ +GK LGGG++P++A++ + Q T +PL A A+A+++V
Sbjct: 285 AYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEV 344
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPVSAYD 397
I E L E+ + +R+ L +++ ++P + +VRG GL VE T AYD
Sbjct: 345 IEQEGLLEKVKADSQFMRERLLEMKAKYP-LIGDVRGIGLLWGVELVTDRHTK--ERAYD 401
Query: 398 I-------CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG----SKALHDVLELD 444
CL G+ K + +++L+PPL I+ EL + +A+ + +
Sbjct: 402 EAEAVLYRCL---NNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKICQDF 456
|
Length = 459 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 3e-65
Identities = 125/437 (28%), Positives = 203/437 (46%), Gaps = 51/437 (11%)
Query: 46 EYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ- 103
E E + +Y +P F++A+G + D EG +YLDFL+ + GH HP + + + +
Sbjct: 9 EMESNVRSYPRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYL 68
Query: 104 AEKLTLSSRAFYNDKFPVFAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYV 158
L L + F E L ++ Y + P +GA+ VE A+KLA+ +
Sbjct: 69 QSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY--- 125
Query: 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFG- 209
++S G FHG T+ A++++ + A G L+PG + FG
Sbjct: 126 -----TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGI 180
Query: 210 ----DITALEKIFK------ESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258
A + F+ ESG D+ A + E IQGE GV+ P +L+ +R++ K++
Sbjct: 181 GGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHD 240
Query: 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 318
I +I DE+Q+G RSG M A + + PD V++ KA+GGG +P+ AVL QP
Sbjct: 241 IKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPL-AVLLIAPEFDAWQPA 298
Query: 319 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378
H TF GN LA +L+ +D+ LA+ + GE + L + ++ P + VRGR
Sbjct: 299 GHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPC-IGNVRGR 357
Query: 379 GLFNAVEF---DKTALPVSAYDICLKMK--------ERGILAKP--THDTIVRLTPPLSI 425
GL + ++ AY ++ E G+L + + RL P++I
Sbjct: 358 GLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITI 417
Query: 426 SSNELQEGSKALHDVLE 442
E +EG +E
Sbjct: 418 DQEECEEGISRFKQAVE 434
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 4e-65
Identities = 131/417 (31%), Positives = 210/417 (50%), Gaps = 51/417 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK------LTLSS 111
P+VF +AKGS ++D +G +Y+DF + A+N GH +P + +AL + ++ L + +
Sbjct: 22 PVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHT 81
Query: 112 RAFYNDKFPVFAERLTSM------FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
A F E Y + TG VE ALKLARK V + +I
Sbjct: 82 TAKRE-----FLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARK---VTGRTNI- 132
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRG--FGPL-----LP--GHLKVDFGDITALEK 216
V+ FHG TL +++++ N R PL +P G+ D + LEK
Sbjct: 133 ----VAFTNGFHGMTLGSLAVT-GNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEK 187
Query: 217 IFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273
+ ++S D A + E +QGE G+ + +L+ + LC K++IL+I D+IQ+G R+
Sbjct: 188 LLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRT 247
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI-QPGEHGSTFGGNPLASA 332
G + + + PD+V L K++ G +P++ VL E L + +PGEH TF GN LA
Sbjct: 248 GTFFSFERAGITPDIVTLSKSISGYGLPMALVLIKPE--LDVWKPGEHNGTFRGNNLAFV 305
Query: 333 VAIASLDVI-RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 391
A A+L+ D+ + GE +R+ L +I ++P EVRGRG+ ++F L
Sbjct: 306 TATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGEL 365
Query: 392 PVSAYDICLKMKERGILAKP--THDTIVRLTPPLSISSNELQEG----SKALHDVLE 442
A I + E G++ + D +V+L PPL+I EL+EG +A+ +VL
Sbjct: 366 ---AGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419
|
Length = 425 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 6e-65
Identities = 124/418 (29%), Positives = 205/418 (49%), Gaps = 50/418 (11%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-- 114
+P+ ++A G + D +GN+ +D S + + G+ P++++A++EQ + T + F
Sbjct: 38 LPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTC--FMV 95
Query: 115 --YNDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168
Y V AE+L + D L N+GAE VE A+K+AR Y ++
Sbjct: 96 TPYEGYVAV-AEQLNRLTPGDHEKRSAL-FNSGAEAVENAVKIARS--YTGRQ------A 145
Query: 169 IVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKV----DFGDIT----------- 212
+V +HGRT ++++ + + GFGP P + + D
Sbjct: 146 VVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAA 205
Query: 213 -ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270
A+ I K+ G D +A + EPIQGE G I+P +G+L A+ + C + ++ IADE+Q+G
Sbjct: 206 RAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGF 265
Query: 271 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA 330
AR+G A + E + PD++ K + GG +P+SAV E+M PG G T+GGNP+A
Sbjct: 266 ARTGAWFACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVA 324
Query: 331 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---- 386
A A+A+++ I ++ L R+ + + L + + + +VRGRG A+E
Sbjct: 325 CAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDD-RIGDVRGRGAMIAIELVKPG 383
Query: 387 DKTALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ G +L T+ ++RL PPL I L+EG DVLE
Sbjct: 384 TTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGL----DVLE 437
|
Length = 443 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-64
Identities = 123/389 (31%), Positives = 199/389 (51%), Gaps = 20/389 (5%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112
NY I F +A+G+ + D +G KYLDF S N G HP++ +ALQ+QA + S
Sbjct: 7 NYKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPN 65
Query: 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC 172
+ N A++L Y + N+GAE E A+K+ARK + + I++
Sbjct: 66 LYLNSLQEEVAQKLIGDKDY-LAFFCNSGAEANEAAIKIARK--------ATGKQEIITF 116
Query: 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232
FHGRT ++S + ++ GFG +P F D+ +++ + A + E
Sbjct: 117 QNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKAL---VNKNTAAVMLEL 173
Query: 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292
+QGE+GV+ ++KA+ D C + IL+I DE+Q+G+ R+G++ A + + PD+ L
Sbjct: 174 VQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLA 233
Query: 293 KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 352
K L GV PV A+LA + G HGSTFGGN L+ A A A+LD++ E++
Sbjct: 234 KGLANGV-PVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALE 292
Query: 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412
G L++ L K Q V VRG G +E TA + +++G++
Sbjct: 293 NGNYLQEQLQKALQDKET-VTTVRGLGYMIGIE--TTADLS---QLVEAARDKGLIVLTA 346
Query: 413 HDTIVRLTPPLSISSNELQEGSKALHDVL 441
++RL PPL+++ E+++G L +V
Sbjct: 347 GTNVIRLLPPLTLTKEEIEQGIAILSEVF 375
|
Length = 375 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 9e-64
Identities = 133/425 (31%), Positives = 213/425 (50%), Gaps = 46/425 (10%)
Query: 46 EYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQA 104
E E +Y P VF +AKGS++WD +G +Y+DF + A+N GH +PK+ +AL +
Sbjct: 5 ELESEVRSYCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYL 64
Query: 105 EK------LTLSSRAFYNDKFPVFAERLTSM------FGYDMVLPMNTGAEGVETALKLA 152
L +++ A F E + Y + P TG VE+ALKLA
Sbjct: 65 ADDGIIHSLDMATEAKRE-----FLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLA 119
Query: 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR--GFGPL-----LP--GH 203
RK V + ++ VS FHG TL ++S++ N R PL +P G+
Sbjct: 120 RK---VTGRSNV-----VSFTNAFHGMTLGSLSVT-GNRFKRQGAGVPLSNVSRMPYDGY 170
Query: 204 LKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260
L D I EK+ ++S D A + E +QGE G+ + D +L+ + LC +++IL
Sbjct: 171 LGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDIL 230
Query: 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH 320
+I D+IQ+G R+G + + + PD+V L K++ G +P++ L E + +PGEH
Sbjct: 231 LIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKPE-LDVWKPGEH 289
Query: 321 GSTFGGNPLASAVAIASLDVI-RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
TF GN LA A A+L+ D+ + E +++ L +I ++P +K+VRGRG
Sbjct: 290 NGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRG 349
Query: 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKAL 437
L +E L A I E G++ + + +D +++L PPL+I LQ+G L
Sbjct: 350 LMQGIECGDGDL---AGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDIL 406
Query: 438 HDVLE 442
+E
Sbjct: 407 EQAVE 411
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-63
Identities = 126/403 (31%), Positives = 207/403 (51%), Gaps = 35/403 (8%)
Query: 64 AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN-DKFPVF 122
A+ +++ D EGN+Y+DF + + +N GH HP ++ A+++Q ++ T ++ + +
Sbjct: 29 AENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTL 88
Query: 123 AERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 179
AE++ ++ G TGAE VE A+K+AR +++ G FHGR
Sbjct: 89 AEKINALAPVSGQAKTAFFTTGAEAVENAVKIARA--------HTGRPGVIAFSGGFHGR 140
Query: 180 TLAAISMSCDNEAIR-GFGPLLPG-----------HLKVDFGDITALEKIFKESGD--QI 225
T ++++ + GFGP PG H + A+E++FK + Q+
Sbjct: 141 TYMTMALTGKVAPYKIGFGPF-PGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQV 199
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
A +FEP+QGE G + P + A+R LC ++ I+MIADE+QSG AR+G++ A D +
Sbjct: 200 AAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADK 259
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD++ + K+L GG +P+S V+ + +M PG G T+ GNPLA A A A L++I E
Sbjct: 260 PDLMTMAKSLAGG-MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKES 318
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
L ER+ LG+ L+ L ++ P VRG G A EF+ + I K+++R
Sbjct: 319 LCERANQLGQRLKNTLIDAKESVPAIA-AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQR 377
Query: 406 G------ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+L + ++R PL+I + K L D L
Sbjct: 378 ALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420
|
Length = 421 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-63
Identities = 125/408 (30%), Positives = 210/408 (51%), Gaps = 50/408 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
PI +A+ +WD EG +YLDF + +N GH HPK++ A++ Q +KL+ +
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC------ 77
Query: 118 KFPVFA--------ERLTSMFGYDM---VLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166
F V A E++ D L + TG+E VE A+K+AR K+
Sbjct: 78 -FQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIAR--AATKR------ 128
Query: 167 AIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHL----------KVDFGD-ITAL 214
+ +++ G +HGRT ++++ N G G L+PGH+ V D I ++
Sbjct: 129 SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG-LMPGHVYRALYPCPLHGVSEDDAIASI 187
Query: 215 EKIFKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272
E+IFK + IA + EP+QGE G +++ +R LC ++ I++IADE+Q+G R
Sbjct: 188 ERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGR 247
Query: 273 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332
+G + A + V D+ K++ GG P++ V EVM I PG G T+ GNP+A A
Sbjct: 248 TGTLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACA 306
Query: 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKT 389
A+A L V E L +++ LGE+L+ L I ++ P + +VRG G A+E
Sbjct: 307 AALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPE-IGDVRGLGAMIAIELFEDGDH 365
Query: 390 ALPVSAY--DICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 433
+ P + I + +++G +L+ + ++R+ PL+I ++++G
Sbjct: 366 SKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
|
Length = 425 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 5e-63
Identities = 127/429 (29%), Positives = 197/429 (45%), Gaps = 52/429 (12%)
Query: 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS- 111
+ P + AKG +G + LD + VN GH P+I++A++ QA +L +
Sbjct: 24 QFKKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA 83
Query: 112 ------RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163
+AF A R+ + G + V N+G+E V+TALK+A + + + S
Sbjct: 84 FQMGHPKAFE------LANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGS 137
Query: 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLK---------------- 205
++ +HG IS+ + FG LLPG HL
Sbjct: 138 --RTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE 195
Query: 206 --VDFGDITALEKI-FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262
+ D LE++ IA + EP+ G GV+IPP GYL+ +R++C K+ IL+I
Sbjct: 196 HGAELAD--ELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLI 253
Query: 263 ADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--- 319
DE+ +G R G A+ + V PD++ K L G IP+ AV E+ G
Sbjct: 254 FDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAG 313
Query: 320 ----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375
HG T+ G+PLA A A+A+LD+ E L R+A L L + + P+ V ++
Sbjct: 314 IEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSL-RDAPH-VIDI 371
Query: 376 RGRGLFNAVEFDKTALPVS--AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 433
R GL AVE AY++ LK E+G++ + T D + L+PPL I ++ E
Sbjct: 372 RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTGDILA-LSPPLIIEEAQIDEL 430
Query: 434 SKALHDVLE 442
L L+
Sbjct: 431 FDILAQALK 439
|
Length = 442 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-61
Identities = 126/446 (28%), Positives = 209/446 (46%), Gaps = 54/446 (12%)
Query: 47 YEYSA-HNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPK 95
+A +HP+ PI+ + G ++D +G K LD + VN GH +
Sbjct: 3 MSNNARRFWHPMAHPAEMKARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREE 62
Query: 96 IMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALK 150
+ +A+ Q ++L S + + + L MF + V + G++ VETALK
Sbjct: 63 VKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALK 122
Query: 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--- 207
LAR+ Y K + + +S +HG S++ + R + PLLPG V+
Sbjct: 123 LARQ--YWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPW 180
Query: 208 -----FGD----------ITALEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251
F + LE+ I + D IA F+ EP+QG GVI+PP + VR
Sbjct: 181 LYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVR 240
Query: 252 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 311
++C ++ IL+IADE+ +G R+G S V+PD++ L K + G +P+ A + + +
Sbjct: 241 EVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARI 300
Query: 312 MLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364
+ HG T+ G+P+A A A+A+LD++ E L +A G L + L +
Sbjct: 301 ADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPL 360
Query: 365 QQQFPNYVKEVRGRGLFNAVEF--DK-TALPVSAYDICLKM-----KERGILAKPTHDTI 416
+++F V +VRG+GL A++ DK T P+ +E G+L +P+ I
Sbjct: 361 KERFE-LVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKI 419
Query: 417 VRLTPPLSISSNELQEGSKALHDVLE 442
+ L+PPL I ++ AL L
Sbjct: 420 I-LSPPLVIQREDVDRIVDALDAGLS 444
|
Length = 449 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 4e-61
Identities = 138/459 (30%), Positives = 224/459 (48%), Gaps = 72/459 (15%)
Query: 39 SQQLINLEYEYSAHN---YHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHP 94
+ +L+ + +Y H Y+P +V ++A+G+ + D +GN+YLD +S VN G+
Sbjct: 7 TDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRK 66
Query: 95 KIMKALQEQAEKLTLSSRAFYNDKFPV---------FAERLTSMFGYD-MVLPMNTGAEG 144
++ +A EQ + L+ Y FP+ AE+L G + ++ N+G+E
Sbjct: 67 ELAEAAYEQLKTLS------Y---FPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEA 117
Query: 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG--FGPLLPG 202
ETA K+AR+ Y +K +S +HG ++ A ++ +A R + PL PG
Sbjct: 118 NETAFKIARQ--YHAQKGEPHRYKFISRYRAYHGNSMGA--LAATGQAQRKYKYEPLAPG 173
Query: 203 HLKV---------DFG--DITALE-------KIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
L V DI LE + E + IA + EPI GV++PP
Sbjct: 174 FLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQ 233
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
Y+KAV+++C K+ L+I+DE+ G R+G+ V+PD++ + K + +P+SA
Sbjct: 234 DYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSA 293
Query: 305 VLADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 358
KE+ + H +TFGGNP A A+A+ +L+++ +E L ERSA LGE L
Sbjct: 294 TAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLL 353
Query: 359 QHLFKIQQQFPNYVKEVRGRGLFNAVEF--DK-TALPVSAYDI------CLKMKERGILA 409
+ L + + P V ++RG+GL +E DK T P + C KE+G++
Sbjct: 354 EQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAAC---KEKGLII 409
Query: 410 KPTHDT------IVRLTPPLSISSNELQEGSKALHDVLE 442
DT ++ L+PPL ISS E+ L LE
Sbjct: 410 GKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALE 448
|
Length = 451 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 4e-60
Identities = 133/426 (31%), Positives = 200/426 (46%), Gaps = 58/426 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS------- 110
P + A+G D +G K LD + N GH P+I++A+ QA L +
Sbjct: 32 PRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGH 91
Query: 111 SRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168
AF AERL + G D V N+G+E V+TALK+A + + + + I
Sbjct: 92 PLAF------ELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLI 145
Query: 169 IVSCCG---CFHGRTLAAISMSCDNEAIRGFGPLLPG--HLK------------------ 205
G +HG IS+ + FG LLPG HL
Sbjct: 146 -----GRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHG 200
Query: 206 VDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264
+ D LE++ IA + EP+ G AGV++PP GYL+ +R++C K+ IL+I D
Sbjct: 201 AELAD--DLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFD 258
Query: 265 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM-LCIQPGE---- 319
E+ +G R G A++ V PD++ K L G IP+ AV+A E+ +Q E
Sbjct: 259 EVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIE 318
Query: 320 --HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377
HG T+ +P+A A +A+LD+ R+E L ER+A L + ++ P+ V ++R
Sbjct: 319 FFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGL-PH-VIDIRN 376
Query: 378 RGLFNAVEFD--KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 435
GL +E A Y+ +K E+G+L + T DTI L+PPL I ++ E
Sbjct: 377 IGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYTGDTIA-LSPPLIIEKAQIDELVD 435
Query: 436 ALHDVL 441
AL D L
Sbjct: 436 ALGDAL 441
|
Length = 445 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 5e-59
Identities = 139/464 (29%), Positives = 227/464 (48%), Gaps = 69/464 (14%)
Query: 29 QGGTSPSSSSSQQLI-NLEYEYSAHNYHP--VPIVFSQAKGSSIWDPEGNKYLDFLSAYS 85
T S+S L E +A +Y P +P+ +A+G + D EG +++D L+
Sbjct: 15 AMETLYEFSNSPLLERQSRRESNARSY-PRRIPLALKRARGIYVEDVEGRQFIDCLAGAG 73
Query: 86 AVNQGHCHPKIMKALQEQ-AEKLTLSS--------RAFYNDKF----PVFAERLTSMF-G 131
+ GH HP +++A+Q+ A++L L + F D F FA F G
Sbjct: 74 TLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCG 133
Query: 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191
P TG + VE ALKL + + + ++S G +HG + A+S+ +
Sbjct: 134 -----P--TGTDAVEAALKLVKT--------ATGRSTVLSFQGGYHGMSQGALSLMGNLG 178
Query: 192 AIRGFGPLLPG--------HLKVDFG---------DITALEKIFK--ESGDQI-AGFLFE 231
+ G LLPG + FG ++ LE + ESG + A + E
Sbjct: 179 PKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILE 238
Query: 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291
+QGE GVI P +L+ +R + + I +I DEIQSG R+G+M A + + PD+V+L
Sbjct: 239 VVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVL 298
Query: 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA 351
KA+GG +P++ V+ + + QPG H TF GN +A A A+L I++ +LAE +A
Sbjct: 299 SKAIGGS-LPLAVVVYREWLDTW-QPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAA 356
Query: 352 HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-DKTALPVS----------AYDICL 400
+GE LR+HL ++Q+ +P + +VRGRGL VE D P + A I
Sbjct: 357 AMGERLREHLRQLQRDYP-QLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQR 415
Query: 401 KMKERGILAK--PTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ RG++ + H ++VR PPL I++ ++ E ++ + +
Sbjct: 416 ECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVA 459
|
Length = 464 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 3e-58
Identities = 127/418 (30%), Positives = 210/418 (50%), Gaps = 55/418 (13%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAF 114
P++ + +G ++D GN+Y D +S+ GH P++ +A++EQ K+ TL A
Sbjct: 39 PLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLA- 97
Query: 115 YNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLA-RKW---GYVKK-KFSIDEA 167
N + AE+L + G V ++GA VE A+K+A + W G KK +F
Sbjct: 98 -NVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRF----- 151
Query: 168 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF--------GD--------- 210
V+ +HG T+ A+S+ + + + LL +K+ + G+
Sbjct: 152 --VTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKH 209
Query: 211 ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
+ LE++ KE ++IA + EP +QG G+I P GYLK +R+LC+KYN+L I DE+ +G
Sbjct: 210 LEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATG 269
Query: 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGS 322
R+G+M A + E V PD++ GK L GG +P++ + E+ HG
Sbjct: 270 FGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGH 329
Query: 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382
++ GNPL AVA+A+L++ L E+ A E + L + +V ++R GL
Sbjct: 330 SYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFAL--KHVGDIRQLGLMV 387
Query: 383 AVEF--DK-TALPVS-----AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
+E +K T P +C + +E G+L +P +TIV PPL+ + +EL E
Sbjct: 388 GIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIV-FMPPLASTIDELDE 444
|
Length = 460 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 4e-58
Identities = 132/429 (30%), Positives = 203/429 (47%), Gaps = 63/429 (14%)
Query: 55 HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSSRA 113
V +G + D G +YLD S +AV GH HP+++ A+ Q ++L + +
Sbjct: 10 RATLPVAVAGEGIYLIDATGKRYLD-ASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS 68
Query: 114 FY-NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV 170
F+ + A+RL + G + V ++ G+E VE ALKLAR++ +V+ I
Sbjct: 69 FFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQY-FVEIGQPQRRHFIA 127
Query: 171 ---SCCGCFHGRTLAAISMSCDNEAIRG-FGPLL----------------PGHLKVDFGD 210
S +HG TL A+++ N R F PLL G +G
Sbjct: 128 RRQS----YHGNTLGALAIG-GNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQ 182
Query: 211 ITALE---KIFKESGDQIAGFLFEPIQGE-AGVIIPPDGYLKAVRDLCSKYNILMIADEI 266
A E KI + D +A F+ E + G AG + P GY K +R++C +Y +L+I DE+
Sbjct: 183 RLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEV 242
Query: 267 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGS 322
G+ R+G + A + + V PD+V + K LG G P+ AVLA + I G +HG
Sbjct: 243 MCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGH 302
Query: 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN--YVKEVRGRGL 380
T+ G+ A A A+A VI ++ L GE+LR L +++ +V ++RGRGL
Sbjct: 303 TYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARL---RERLGQHPHVGDIRGRGL 359
Query: 381 FNAVE----------FDKTALPVSAYDICLKMKERGILAKPTHDTI-------VRLTPPL 423
F VE FD AL + A I + RG++ P TI V L PP
Sbjct: 360 FVGVELVADRATKAPFDP-ALKLHA-RIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPF 417
Query: 424 SISSNELQE 432
I++ ++ E
Sbjct: 418 IITAAQIDE 426
|
Length = 443 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 4e-58
Identities = 126/422 (29%), Positives = 230/422 (54%), Gaps = 50/422 (11%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YN 116
P+V + G+ I D +GN ++DFL+ +A + G+ HPK++KA+QEQ + S + ++
Sbjct: 36 PLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHS 95
Query: 117 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
++ AE+L + + VL +G++ V+ A+K+++ FS I++ G
Sbjct: 96 ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSK--------FSTRRPWILAFIG 147
Query: 175 CFHGRTLAAISM-SCDNEAIRGFGPLLPGHLKVDFGD-------ITALEK---------- 216
+HG+TL A S+ + + RGF PL+P + + + + I E+
Sbjct: 148 AYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLD 207
Query: 217 -----IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
+F D++A EPIQG+AG+++PP+ + K ++ L ++ IL++ DE+Q+G
Sbjct: 208 YLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTG 267
Query: 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329
+ R+G+ AS+W EV+PD++I GK + G + +S V+ KE+M + G T NP+
Sbjct: 268 IGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMD-LTSGSALLTPAANPV 325
Query: 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT 389
SA A A+L++I +E L + + +GE +++ L ++++ F + +VRG+GL VE K
Sbjct: 326 ISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESF-EVIGDVRGKGLMIGVEIVKE 384
Query: 390 AL---PVSAYDICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEG----SKALHD 439
P IC + E G++ P++ ++R+TPPL I+ ++G +A+ D
Sbjct: 385 NGKPDPELTGKICWRAFELGLIL-PSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKD 443
Query: 440 VL 441
L
Sbjct: 444 AL 445
|
Length = 457 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 6e-58
Identities = 130/422 (30%), Positives = 212/422 (50%), Gaps = 64/422 (15%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ-AEKLTLSSRAFY 115
+P+ ++A+G + D EGN+YLD L+ + GH HP +++++Q+ L L +
Sbjct: 40 LPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLT 99
Query: 116 NDKFPVFAERLTSMF---GYDMVLPMN--TGAEGVETALKLARKWGYVKKKFSIDEAIIV 170
F+E L S+ G + L +GA+ VE A+KLA+ + + ++
Sbjct: 100 TPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY--------TGRSNVI 151
Query: 171 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF--------------GD--ITAL 214
S G +HG T A++++ + L+PG V F G+ + AL
Sbjct: 152 SFSGGYHGMTHGALAVTGNLSPKNAVNGLMPG---VQFMPYPHEYRCPLGIGGEAGVKAL 208
Query: 215 EKIFK------ESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267
F+ ESG + A + E IQGE GV P +L+ +R++ K+ IL+I DE+Q
Sbjct: 209 TYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ 268
Query: 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 327
+G AR+G+M A + + PD++++ KA+GGG +P+ AVL K+ QPG H TF GN
Sbjct: 269 AGFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPL-AVLGIKKEFDAWQPGGHTGTFRGN 326
Query: 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF- 386
LA A + +L ++++E LA+ +A GE L+ L ++Q+++P + VRGRGL +E
Sbjct: 327 QLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYP-CIGNVRGRGLMIGIEIV 385
Query: 387 ------DKTA-------LPVSAYDICLKMK---ERGILAKPTHDTIVRLTPPLSISSNEL 430
D L + C + ERG + +VRL PPL I+ E
Sbjct: 386 DERQPADAMGSYPADGELAAAIQKACFENGLLLERG----GRNGNVVRLLPPLLITQAEC 441
Query: 431 QE 432
+E
Sbjct: 442 EE 443
|
Length = 459 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 5e-56
Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 29/320 (9%)
Query: 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY 115
P P ++ KG+ ++D +GN+Y+D++ ++ + GH HP++++A++E E+ T S
Sbjct: 29 PTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT--SYGAP 86
Query: 116 NDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
+ + A+ + S +MV +N+G E +A++LAR GY + I+ G
Sbjct: 87 TEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLAR--GYTGRD------KIIKFEG 138
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGH--------LKVDFGDITALEKIFKESGDQIA 226
C+HG A + + A G P PG L + + D+ ALE++F+E G++IA
Sbjct: 139 CYHGHHDALLVKAGSGAATLGL-PTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIA 197
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEV 284
G + EP+ G GV+ P +L +R L +Y L+I DE+ +G +A G A ++ V
Sbjct: 198 GVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGG---AQEYFGV 254
Query: 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIASLDVI 341
PD+ LGK +GGG +PV A +E+M + P G T GNPLA A +A+L ++
Sbjct: 255 EPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLL 313
Query: 342 RDEKLAERSAHLGEELRQHL 361
+E + L + L + L
Sbjct: 314 DEEGVYTELDELAKRLAEGL 333
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 4e-55
Identities = 136/443 (30%), Positives = 211/443 (47%), Gaps = 80/443 (18%)
Query: 50 SAHNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
+AH+ HP V ++A+G +WD EGNK LD ++ VN G+ ++ A
Sbjct: 15 AAHHLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADA 74
Query: 100 LQEQAEKLTLSSRAFYNDKF-----PV--FAERLTSMFGYDM--VLPMNTGAEGVETALK 150
Q +L +YN F P A +L + V N+G+E +T L+
Sbjct: 75 AARQMREL-----PYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLR 129
Query: 151 LARK-W---GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLK 205
+ R W G +KK +I+S +HG T+A S+ + + G L +PG +
Sbjct: 130 MVRHYWALKGKPQKK------VIISRKNGYHGSTVAGASL-GGMKYMHEQGDLPIPGIVH 182
Query: 206 VD---------------FGDITA--LEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYL 247
+D FG A LE E G D +A F+ EPIQG GVIIPP Y
Sbjct: 183 IDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYW 242
Query: 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLA 307
++ +C KY+IL++ADE+ G R+G S ++PD++ + K L G IP+ AV
Sbjct: 243 PEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGV 302
Query: 308 DKEV--MLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDEKLAER-SAHLGEELRQHLF 362
V +L + GE HG T+ G+P+A+AVA+A+L ++RDE + ER G L++ L
Sbjct: 303 GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRL- 361
Query: 363 KIQQQFPNY--VKEVRGRGLFNAVEFDKTALPVSAY-----------DICLKMKERGILA 409
++ ++ V EVRG GL A+E K + D C G++
Sbjct: 362 ---RELADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFA---NGLIM 415
Query: 410 KPTHDTIVRLTPPLSISSNELQE 432
+ D ++ ++PPL I+ E+ E
Sbjct: 416 RAVGDRMI-ISPPLVITHAEIDE 437
|
Length = 456 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 1e-54
Identities = 127/444 (28%), Positives = 192/444 (43%), Gaps = 70/444 (15%)
Query: 50 SAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109
A+ PVP V + +G IWD G +YLD L+ V GH ++ +A +QA L
Sbjct: 28 GAYIDAPVP-VIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTL-- 84
Query: 110 SSRAFYNDKFPVF----------AERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGY 157
AF FP++ AERL ++ D+ V G+E VE+A KLA++ Y
Sbjct: 85 ---AF----FPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQ--Y 135
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---------- 207
K + ++S +HG T A++++ F PL+PG +V
Sbjct: 136 FKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPEL 195
Query: 208 ------FGDITA---LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258
FG A E I E D +A EP+Q G PP GY + VR++C +Y+
Sbjct: 196 GDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYD 255
Query: 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 318
+L+++DE+ R G M + PD++ K + G P+ A++A + G
Sbjct: 256 VLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDG 315
Query: 319 E----HGSTFGGNPLASAVAIASLDVIRDEKLAER----SAHLGEELRQHLFKIQQQFPN 370
HG TFGG+P+++AVA+A+LD+ E L + L + L P
Sbjct: 316 PTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLL-----DLP- 369
Query: 371 YVKEVRGRGLFNAVEF--DKTALPVSAYDICL---------KMKERGILAKPTH--DTIV 417
V +VRG G F +E DK D + E G+ + D +V
Sbjct: 370 IVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVV 429
Query: 418 RLTPPLSISSNELQEGSKALHDVL 441
+L PPL E E + L VL
Sbjct: 430 QLAPPLISGQEEFDEIEQILRSVL 453
|
Length = 460 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (463), Expect = 3e-52
Identities = 106/342 (30%), Positives = 171/342 (50%), Gaps = 77/342 (22%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P +AKG+ ++D +GN+Y+D++ ++ + GH HP++++A+ E AEK
Sbjct: 33 PRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLS-------- 84
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
F P AE + + +MV +N+G E +A++LAR GY + KF
Sbjct: 85 -FGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLAR--GYTGRDKIIKFE-- 139
Query: 166 EAIIVSCCGCFHGR---TLAAISMSCDNEAIRG---FG-PLLPG-------H-LKVDFGD 210
GC+HG L +A G G P PG H L + D
Sbjct: 140 --------GCYHGHADSLLV--------KAGSGAATLGLPDSPGVPEDFAKHTLTAPYND 183
Query: 211 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG- 269
+ A+E++F+E GD+IA + EP+ G GV+ P G+L+ +R+LC ++ L+I DE+ +G
Sbjct: 184 LEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF 243
Query: 270 -LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHG 321
+A G A + V PD+ LGK +GGG +PV A +E+M + P G
Sbjct: 244 RVALGG---AQGYYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPLGPVYQAG--- 296
Query: 322 STFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQ 359
T GNPLA A +A+L ++++ E+L + L E L++
Sbjct: 297 -TLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKE 337
|
Length = 426 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 4e-52
Identities = 130/416 (31%), Positives = 196/416 (47%), Gaps = 54/416 (12%)
Query: 44 NLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAV-NQGHCHPKIMKALQE 102
NL YS PI F + G + D G YLD ++ V + GH HP+++ A
Sbjct: 599 NLSISYSD------PIKFVRGWGVWLIDNRGRAYLD---CFNNVCHVGHAHPRVVAAAAR 649
Query: 103 QAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKK 160
QA +L ++R + +D +AERLT+ G + +N+G+E AL+LAR +
Sbjct: 650 QAARLNTNTR-YLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRD 708
Query: 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV---------DFG-D 210
+D A +HG T I +S +G G P H++V
Sbjct: 709 AIVLDHA--------YHGTTTELIDLSPYKFNRKG-GKGRPDHVEVAEVPDSYRGPERWP 759
Query: 211 ITALEKIFKES-----------GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259
+ F ES G A F+ E I AG I P+GYL+ V +
Sbjct: 760 DAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGG 819
Query: 260 LMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 318
+ IADE+Q G R G A + + V PD+V +GK +G G P+ AV+ +E+ G
Sbjct: 820 VCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIADSFDNG 878
Query: 319 -EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377
E+ +TFGGNP++ A+ +A LD+I DE L + +G L L ++Q +F + +VRG
Sbjct: 879 MEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFD-IIGDVRG 937
Query: 378 RGLFNAVEF---DKTALPVS--AYDICLKMKERGIL--AKPTHDTIVRLTPPLSIS 426
GLF +E KT P + A + +ERGIL + HD ++++ PPL S
Sbjct: 938 MGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFS 993
|
Length = 1013 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 8e-49
Identities = 133/455 (29%), Positives = 213/455 (46%), Gaps = 81/455 (17%)
Query: 51 AHNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKAL 100
A++ HP P+V + +G ++D G +Y++ ++ +V G ++++A
Sbjct: 14 AYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAA 73
Query: 101 QEQAEKL----TLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARK 154
Q +KL T S ++ + AE+L +M M V N+G+E +T +KL
Sbjct: 74 ARQMKKLPFYHTFSHKS--HGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLV-- 129
Query: 155 WGYV-------KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG-PL------- 199
W Y KKK I+S +HG T+A+ S++ R F PL
Sbjct: 130 WYYNNALGRPEKKK-------IISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTG 182
Query: 200 --------LPGHLKVDFGDITA--LEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248
LPG + F A LE I E D IA F+ EP+ G GVI+PP Y +
Sbjct: 183 CPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWE 242
Query: 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLAD 308
++ + KY+IL++ADE+ G R+G M + ++PD++++ K L P+SAVL +
Sbjct: 243 KIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMN 302
Query: 309 KEVMLCI--QPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 361
++V I + G+ HG T G+P+A+AVA+ +L +I + L +A G L+ L
Sbjct: 303 EKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARL 362
Query: 362 FKIQQQFPNYVKEVRGRGLFNAVEF--DKT---------ALPVSAYDICLKMKERGILAK 410
+ P V EVRG GL AVE DK + A E G++++
Sbjct: 363 RALADH-P-LVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAH---EHGVISR 417
Query: 411 PTHDTIVRLTPPLSISSNELQEG----SKALHDVL 441
DT+ PPL I++ ++ E +AL DV
Sbjct: 418 AMGDTLA-FCPPLIITAAQVDEMVDRFGRALDDVA 451
|
Length = 460 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 4e-48
Identities = 120/445 (26%), Positives = 192/445 (43%), Gaps = 63/445 (14%)
Query: 51 AHNYHPVP----------IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKAL 100
H HP +V +A+G + D +G +YLD + VN G+ ++ A+
Sbjct: 17 RHLLHPWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAI 76
Query: 101 QEQAEKLTLSSRAFYNDKFPV---FAERLTSMFGYDM--VLPMNTGAEGVETALKLARKW 155
+QA +L + F + A +L + D+ V G+ V++AL+ +
Sbjct: 77 ADQARRLPYYT-PFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYY 135
Query: 156 ----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS---CDNEAIRGFGPLL-------- 200
G KK I++ +HG T S++ D L+
Sbjct: 136 FNVRGRPAKKH------IITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNP 189
Query: 201 ---PGHLKV-DFGDITALE---KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253
P + F D E KI D IA F+ EPI G GVI+PP GY +R++
Sbjct: 190 YRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREI 249
Query: 254 CSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 312
C +Y+IL I+DE+ +G R G AS ++PD++ K L G P+ AV+ + ++
Sbjct: 250 CRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLL 309
Query: 313 LCIQ----PGE---HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 365
I G HG T+ G+P+A A A+ +++++ E L E +G + L +
Sbjct: 310 DVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL- 368
Query: 366 QQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAKPTHDTIV 417
++ P V +VRG L VE K LP I +ERG+L +P V
Sbjct: 369 RELP-LVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCV 427
Query: 418 RLTPPLSISSNELQEGSKALHDVLE 442
L+PPL I+ ++ E L +E
Sbjct: 428 -LSPPLIITRAQIDEIVAILRAAIE 451
|
Length = 466 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 8e-48
Identities = 121/431 (28%), Positives = 207/431 (48%), Gaps = 40/431 (9%)
Query: 40 QQLINLEYEYSAHNY----HPVPI-VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHP 94
Q+L+ L+ ++ H Y P+P+ +A G I +G + +D +S++ A G+ HP
Sbjct: 4 QELLELDRQHIWHPYSSVTDPIPVYPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHP 63
Query: 95 KIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKL 151
++ A Q K++ + F ++ A++L + + + ++G+ VE A+K+
Sbjct: 64 RLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKM 123
Query: 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL------- 204
A + Y + K + + +HG T A+S+ CD + G L L
Sbjct: 124 ALQ--YQQAKGEVQRTKFATIRSGYHGDTWHAMSV-CD--PVTGMHGLFNHSLPVQYFLP 178
Query: 205 --KVDFG------DITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS 255
+ FG I L+ + ++ GD+IA + EP+ QG G+ YL R+LC
Sbjct: 179 QPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCD 238
Query: 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 315
+Y +L+I DEI +G R+G++ A + V PD++ +GKAL GG + +SA + + + I
Sbjct: 239 QYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTI 298
Query: 316 QPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 370
GE HG TF NPLA A+A S+ ++ + + + +L+Q L +F
Sbjct: 299 CSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQEL-APAAEFD- 356
Query: 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430
V EVR G VE + PV+ + + E GI +P +V + PP IS +EL
Sbjct: 357 SVAEVRVLGAIGVVEMKE---PVNMATLQPRFVEHGIWVRP-FGKLVYIMPPFIISPDEL 412
Query: 431 QEGSKALHDVL 441
+ + L VL
Sbjct: 413 SQLTSGLLRVL 423
|
Length = 429 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 1e-47
Identities = 136/466 (29%), Positives = 206/466 (44%), Gaps = 91/466 (19%)
Query: 35 SSSSSQQLINLEYEYSAHNY-HPV----------PIVFSQAKGSSIWDPEGNKYLDFLSA 83
+ +S Q+ + E + H+ P P+V +++GS ++D G KYLD L+
Sbjct: 38 TEASLQKEDSEENGFKGHDMLAPFTAGWQSTDLEPLVIEKSEGSYVYDINGKKYLDALAG 97
Query: 84 YSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPV---FAERLTSMF-GYDM--VLP 137
G P+++ A EQ KL +F+N A+ L MF M V
Sbjct: 98 LWCTALGGSEPRLVAAATEQLNKLPFY-HSFWNRTTKPSLDLAKELLEMFTARKMGKVFF 156
Query: 138 MNTGAEGVETALKLARKWGYV-------KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190
N+G+E +T +KL W Y KKKF ++ +HG TL + S+S
Sbjct: 157 TNSGSEANDTQVKLV--WYYNNALGRPNKKKF-------IARSKSYHGSTLISASLSGLP 207
Query: 191 EAIRGF---GPL-------------LPGHLKVDFGDITA--LEK-IFKESGDQIAGFLFE 231
+ F P LPG + +F A LE I KE + IA F+ E
Sbjct: 208 ALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAE 267
Query: 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291
P+ G GVI PP Y + ++ + KY+IL IADE+ R G M D ++PD+V L
Sbjct: 268 PVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSL 327
Query: 292 GKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDE 344
KAL +P+ AVL E+ I HG T+ G+P++ AVA+ +L + ++
Sbjct: 328 AKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER 387
Query: 345 KLAERSAHLGEELRQHLFKIQQQFPNYVK---------EVRGRGLFNAVEFDKTALP--- 392
+ E H+ KI +F + +K E+RG GL EF P
Sbjct: 388 NIPE-----------HVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDP 436
Query: 393 ------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432
V AY + K+RG+L + D I+ ++PPL I+ E+ E
Sbjct: 437 FPAEWGVGAY-FGAECKKRGMLVRVAGDNIM-MSPPLIITPEEVDE 480
|
Length = 504 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-43
Identities = 115/411 (27%), Positives = 194/411 (47%), Gaps = 42/411 (10%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P V + +G +WD +G +YLD +S N G+ + A Q E+L + F+
Sbjct: 37 PRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTT 96
Query: 118 KFPV--FAERLTSMFG--YDMVLPMNTGAEGVETALKLARK-WGYVKKKFSIDEAIIVSC 172
V +E L S+ Y + N+G+E E ++ R+ W + K + I++
Sbjct: 97 HPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKP---QKKIMIGR 153
Query: 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---------------FGDITAL--- 214
+HG TLAA ++ + + G L+P +D FG AL
Sbjct: 154 WNGYHGSTLAATALG-GMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLE 212
Query: 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
EKI + + +AGF+ EP QG G+I PP+ Y ++ +C +Y++L+ ADE+ G R+G
Sbjct: 213 EKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG 272
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPG--EHGSTFGGNPLA 330
A + PD + + K L G +P+ ++ K + L Q G HG T+ G+P+A
Sbjct: 273 EWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVA 332
Query: 331 SAVAIASLDVIRDEKLAERSAH-LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT 389
+AVAIA+L +RDE + R G L++ L ++ P V EV+G GL A++F +
Sbjct: 333 AAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHP-LVGEVQGAGLVAALQFAED 391
Query: 390 ALPVSAY----DICLKMK----ERGILAKPTHDTIVRLTPPLSISSNELQE 432
+ D+ + + E G++ + T ++ + P L E+ E
Sbjct: 392 KATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMI-MAPALVAGRAEIDE 441
|
Length = 460 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 7e-43
Identities = 122/410 (29%), Positives = 199/410 (48%), Gaps = 50/410 (12%)
Query: 64 AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFA 123
A+G + +G + +D +S++ A G+ HP++ A++ Q + + S F P
Sbjct: 32 AEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM--SHVMFGGITHPPAI 89
Query: 124 E---RLTSMF--GYDMVLPMNTGAEGVETALKLARKW----GYVKKKFSIDEAIIVSCCG 174
E +L +M + V ++G+ VE A+K+A ++ G +++F ++
Sbjct: 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRF-------LTLRH 142
Query: 175 CFHGRTLAAISMSCD-----NEAIRGFGPLLPGHLKVD-----FG------DITALEKIF 218
+HG T A+S+ CD + +G+ LP +L F DI ++
Sbjct: 143 GYHGDTFGAMSV-CDPDNSMHSLYKGY---LPENLFAPAPQSRFDGEWDERDIAPFARLM 198
Query: 219 KESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
+IA + EPI QG G+ I +LK VR LC + IL+IADEI +G R+G++
Sbjct: 199 AAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLF 258
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASA 332
A + + PD++ LGKAL GG + +SA L +EV I GE HG TF GNPLA A
Sbjct: 259 ACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318
Query: 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392
VA ASL ++ ++ A + +LR+ L ++ V +VR G VE T P
Sbjct: 319 VANASLSLLESGDWQQQVAAIEAQLREELAPLRDA--PMVADVRVLGAIGVVE---TTRP 373
Query: 393 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
V+ + E+G+ +P I L PP I +LQ + A++ ++
Sbjct: 374 VNMAALQRFFVEQGVWIRPFGKLIY-LMPPYIILPEQLQRLTAAVNRAVQ 422
|
Length = 428 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 1e-42
Identities = 105/334 (31%), Positives = 157/334 (47%), Gaps = 57/334 (17%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P+V + KG+ +D +GNKY+D+L+AY + GH HP I KA+ E AE L Y
Sbjct: 36 PVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL-----YGT 90
Query: 118 KFP---VFAERLT----SMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV 170
FA+ L S+ + V +N+G E V T +++AR Y + I+
Sbjct: 91 PTELEIEFAKMLKEAIPSL---EKVRFVNSGTEAVMTTIRVAR--AYTGRT------KII 139
Query: 171 SCCGCFHGR-------------TL-----AAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212
GC+HG TL A + S E I V F DI
Sbjct: 140 KFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVI-----------TVPFNDIE 188
Query: 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272
AL++ + GD++A L EPI G G++ P G+L+AV +L + L+I DE+ + R
Sbjct: 189 ALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-R 247
Query: 273 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PGEHGSTFGGNPL 329
A D V PD+ LGK +GGG +P+ A K++M + P T GNP
Sbjct: 248 FMYGGAQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPA 306
Query: 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 363
+ A IA L+V++ E + E+ LG L + + +
Sbjct: 307 SMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE 340
|
Length = 428 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-42
Identities = 121/437 (27%), Positives = 194/437 (44%), Gaps = 68/437 (15%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-- 115
+ +G I D +G +Y+D + VN G+ ++ +A+ EQA++L A+Y
Sbjct: 33 GRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL-----AYYHT 87
Query: 116 -----NDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGY-------VKKK 161
+ ++R+ M V +G++ ET +KL W Y KKK
Sbjct: 88 YVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLV--WYYNNVLGRPEKKK 145
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMS----------------CDNEAIRGFGPLLPGHLK 205
I+S +HG + S++ EA + G +
Sbjct: 146 -------IISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSE 198
Query: 206 VDFGDITA--LEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262
F A LE+ I E D IA F+ EP+ G G++ PP GY A++ + KY+IL+I
Sbjct: 199 EQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLI 258
Query: 263 ADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--- 319
ADE+ +G R G M SD + PD++ + K L P+S + ++V ++ G
Sbjct: 259 ADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEH 318
Query: 320 ----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375
HG T+ G+P+ +A A+A+LD++ E L +A +G R L P V EV
Sbjct: 319 GAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPL-VGEV 377
Query: 376 RGRGLFNAVEF-----DKT----ALPVSAYDICLKMKERGILAKPT-HDTIVRLTPPLSI 425
RG G+ AVEF D+T AL + + ERG++A+ H I+ PPL +
Sbjct: 378 RGVGMLAAVEFVADRDDRTPFDPALKIGP-QVSAAALERGVIARAMPHGDILGFAPPLVL 436
Query: 426 SSNELQEGSKALHDVLE 442
+ E E D ++
Sbjct: 437 TRAEADEIVAIAKDAVD 453
|
Length = 461 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 113/427 (26%), Positives = 187/427 (43%), Gaps = 57/427 (13%)
Query: 58 PIVF--SQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL----- 109
+V +++GS + D +G +YLD S ++++ G HP ++ L +A
Sbjct: 18 DLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKP 77
Query: 110 SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKWGYVKKKFS-- 163
S+ Y F + + G D LP + GA VE ALK A W + +
Sbjct: 78 SNSDVYTVAMARFVDTFARVLG-DPALPHLFFIEGGALAVENALKTAFDWK-SRHNQARG 135
Query: 164 IDEAI---IVSCCGCFHGRTLAAISMS-----------------CDNEAIRGFGPLLPGH 203
I A+ ++ FHGR+ +S++ DN + F P
Sbjct: 136 IPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLT-FPLDAPNL 194
Query: 204 LKVDFGDITAL---EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260
+V + AL F E IA F+ EPIQGE G +L+A+R LC +++ L
Sbjct: 195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDAL 254
Query: 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLCI 315
+I DE+Q+G+ +G A V+PD+V GK V ++A + V +
Sbjct: 255 LIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKK-----TQVCGIMAGRRVDEVADNVFA 309
Query: 316 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375
P ST+GGN + A L++I +E+L + + G L L ++ +FP+ V
Sbjct: 310 VPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNP 369
Query: 376 RGRGLFNAVEFDKTALPVSAY--DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 433
RGRGL A + LP +A ++ ++ G+L + +R PPL+++ E+
Sbjct: 370 RGRGLMCAFD-----LPSTADRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAA 424
Query: 434 SKALHDV 440
A+ V
Sbjct: 425 IDAIRRV 431
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-41
Identities = 120/413 (29%), Positives = 192/413 (46%), Gaps = 61/413 (14%)
Query: 65 KGSSIW--DPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPV- 121
+G +W D EG +YLD +S++ GH +P+I + +++Q ++L A ++ + PV
Sbjct: 35 RGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHE-PVI 93
Query: 122 -FAERLTSMF--GYDMVLPMNTGAEGVETALKLA-RKWGYV----KKKFSIDEAIIVSCC 173
+ERL + G + G+ +E ALK++ W KK+F V+
Sbjct: 94 ELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRF-------VTLT 146
Query: 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEK 216
+HG TLAA+S+ + PLL +KV D +E+
Sbjct: 147 NSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQ 206
Query: 217 IFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 275
E D+IA + EP IQG G+ + YLK +R+ C +Y + +I DEI G R+G
Sbjct: 207 TLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT 266
Query: 276 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNP 328
M A + +RPD + L KAL GG +P++AVL V ++ H ++ GNP
Sbjct: 267 MFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNP 326
Query: 329 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-- 386
LA A A+A+LD+ + + E + L + + + P+ V EVR G+ A+E
Sbjct: 327 LACAAALATLDIFEQDNVIENNRALARRMAEATAHLADH-PH-VAEVRQTGMILAIEMVQ 384
Query: 387 ---DKTALP------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430
KT P + Y L ERG L +P ++V PP I+ ++
Sbjct: 385 DKASKTPYPWQERRGLKVYQHAL---ERGALLRPL-GSVVYFLPPYVITPEQI 433
|
Length = 466 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 6e-40
Identities = 126/442 (28%), Positives = 194/442 (43%), Gaps = 83/442 (18%)
Query: 58 PIVF--SQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKI------MKALQEQA-EKL 107
+V +++GS + D G +YLD + +++ G HP + L A K
Sbjct: 25 DLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKP 84
Query: 108 TLSSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKWGYVKKKFS 163
+ S Y + F + + G D LP ++ GA VE ALK+A W +K +
Sbjct: 85 SNSD--VYTVEMARFVDTFARVLG-DPELPHLFFVDGGALAVENALKVAFDWK-SRKNEA 140
Query: 164 --IDEAI---IVSCCGCFHGRTLAAISMS-----------------CDNEAIRGFGPLLP 201
ID A+ ++ G FHGR+ +S++ DN +R P
Sbjct: 141 RGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLP--- 197
Query: 202 GHLKVDFGDITALEK--------IFKESGDQIAGFLFEPIQGEAGVIIPPDG-----YLK 248
D ++ ALE F+ IA F+ EPIQGE G D +
Sbjct: 198 ---GEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGG-----DNHFRPEFFA 249
Query: 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLAD 308
A+R+LC +++ L+I DE+Q+G+ +G A VRPD+V GK V ++A
Sbjct: 250 AMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKT-----QVCGIMAG 304
Query: 309 KEVMLC-----IQPGEHGSTFGGNPLASAV-AIASLDVIRDEKLAERSAHLGEELRQHLF 362
+ V ST+GGN L V A L+VI ++ L E +A GE L L
Sbjct: 305 RRVDEVEDNVFAVSSRINSTWGGN-LVDMVRARRILEVIEEDGLVENAARQGEYLLARLE 363
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY--DICLKMKERGILAKPTHDTIVRLT 420
++ +FP V VRGRGL A FD LP +A ++ ++ E G+L P + +R
Sbjct: 364 ELAAEFPAVVSNVRGRGLMCA--FD---LPTTADRDEVIRRLWEEGVLVLPCGERSIRFR 418
Query: 421 PPLSISSNELQEGSKALHDVLE 442
P L++++ E+ AL L
Sbjct: 419 PALTVTTEEIDAAIDALRRALP 440
|
Length = 443 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-39
Identities = 126/456 (27%), Positives = 199/456 (43%), Gaps = 60/456 (13%)
Query: 39 SQQLINLEYEYSAHNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVN 88
S LI L+ AH HPV V + AKG+++ D G++ LD + VN
Sbjct: 3 SNSLIELD---RAHLIHPVASYRGHEARGVTVLASAKGATLTDASGHQLLDAFAGLWCVN 59
Query: 89 QGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPV--FAERLTSMFGYDM--VLPMNTGAEG 144
G+ I++A EQ +L ++ F+ P A +L + V G++
Sbjct: 60 VGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDA 119
Query: 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 204
V++A++ R + + S + I + +HG + ++ RGF LP
Sbjct: 120 VDSAVRFIRHYWNATGRPSKKQFISLE--RGYHGSSSVGAGLTALPAFHRGFDLPLPWQH 177
Query: 205 KV--------DFGD---------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGY 246
K+ GD + AL E G D +A F EPIQG GVI+PP G+
Sbjct: 178 KIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGW 237
Query: 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 306
LKA+R+ C + IL +ADE+ +G R+G + A + E V PD++ + K L G +P+ AVL
Sbjct: 238 LKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVL 297
Query: 307 ADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359
V I G HG T+ +P+++AV + L + + L G
Sbjct: 298 MSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAA 357
Query: 360 HLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVSAYDICLKMKER----GILAK 410
L ++ P V +VRGRGL A+E KT + D ++ +R G++ +
Sbjct: 358 GLDALRAH-P-LVGDVRGRGLLGALELVADKATKTPFDAAL-DPADRIFDRAYANGLVFR 414
Query: 411 PTHDTIVRLTPPLSISSNE----LQEGSKALHDVLE 442
D ++ P L + E + K L DVL
Sbjct: 415 AFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLA 450
|
Length = 459 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 2e-38
Identities = 121/390 (31%), Positives = 192/390 (49%), Gaps = 51/390 (13%)
Query: 71 DPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF 130
D G YLD ++ + + GH HP++ A Q L +SR F+ F+ERL ++
Sbjct: 581 DMAGRSYLDMVNNVTVL--GHGHPRLAAAAARQWSLLNTNSR-FHYAAVAEFSERLAALA 637
Query: 131 --GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISM 186
G D V +N+G+E + A++LA W ++ D +VS +HG T+A A+S
Sbjct: 638 PDGLDTVFLVNSGSEANDLAIRLA--WAASGRR---D---VVSVLEAYHGWTVATDAVST 689
Query: 187 S-CDN--------------EAIRGF-GPLLPGHLKVDF-GDITA-LEKIFKESGDQIAGF 228
S DN E+ + G D+ D+ A LE++ SG +AGF
Sbjct: 690 SIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEEL-DASGRGLAGF 748
Query: 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW--EE--V 284
+ EP+ G AG I P GYL+ V + IADE+Q G R G W E+ V
Sbjct: 749 ICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYF---WGFEQQGV 805
Query: 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCI-QPGEHGSTFGGNPLASAVAIASLDVIRD 343
PD++ + K +G G P+ AV+ +E+ + G S+ GG+P++ + +A LDV+R+
Sbjct: 806 VPDIITMAKGMGNGH-PLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLRE 864
Query: 344 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--DKTAL---PVSAYDI 398
EKL E + +G+ L+ L + + P + V G GL+ VE D+ L I
Sbjct: 865 EKLQENARRVGDHLKARLEALADRHP-LIGAVHGMGLYLGVELVRDRQTLEPATEETAAI 923
Query: 399 CLKMKERGILAKPT--HDTIVRLTPPLSIS 426
C ++ E G++ +PT H I+++ PPL +
Sbjct: 924 CDRLLELGVIMQPTGDHLNILKIKPPLCLD 953
|
Length = 972 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 93/300 (31%), Positives = 151/300 (50%), Gaps = 24/300 (8%)
Query: 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116
P + S A G D G ++DF ++ ++ GH HPKI A+Q+ AE+ T S +
Sbjct: 35 TPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT--SYGLTS 92
Query: 117 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
++ +FAE L S G + + +++G E TA++LAR G + +II+ G
Sbjct: 93 EQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLAR--GITGR------SIIIKFLG 144
Query: 175 CFHGRT---LAAISMSCDN----EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227
C+HG L IS S + + P L + + D + + G ++AG
Sbjct: 145 CYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAG 204
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
+FEPI GV++P G+++ + C + L I DE+ +G R + A+ V+PD
Sbjct: 205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPD 263
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTFGGNPLASAVAIASLDVIRDE 344
+ + GK LGGG +P +AV+A K +M + P G T GNPLA A AS+++ R++
Sbjct: 264 ITVYGKILGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQ 322
|
Length = 433 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 113/420 (26%), Positives = 194/420 (46%), Gaps = 52/420 (12%)
Query: 55 HPVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113
H +P+V ++ +G+ + +G +YLD +S++ GH P+I A+ QA +L A
Sbjct: 43 HTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLA 102
Query: 114 -FYNDKFPVFAERLTSMFG-------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165
F ++ AE+L ++ V + G+ GVE ALK+A + Y +
Sbjct: 103 GFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA--FHYFHNRGEHR 160
Query: 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL---------------PGHLKVDFGD 210
++ +HG T+ A+++ R + PLL PG D+
Sbjct: 161 RTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYAL 220
Query: 211 ITA--LEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267
A L+ +F++S +I + EP +Q G+ + YL+ R+LC + +IADEI
Sbjct: 221 QAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA 280
Query: 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HG 321
+G R+G + A + V PD++ L K L GG +P+SAVLA +++ H
Sbjct: 281 TGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHS 340
Query: 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381
++ GNPLA A A+A+LD+ D+ + R+ + Q +I + +V +VR G+
Sbjct: 341 HSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEH--PHVADVRQAGMV 398
Query: 382 NAVE----------FDKTA-LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430
A E F A + + AY L RG++ +P D ++ PP + +L
Sbjct: 399 VAFELTRGGNKRTPFPPAARVGLHAYRAALA---RGVVLRPLGD-VLYWMPPYCVDEAQL 454
|
Length = 472 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 5e-35
Identities = 117/427 (27%), Positives = 193/427 (45%), Gaps = 58/427 (13%)
Query: 56 PVPIVFSQAKGSSIW--DPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLSSR 112
+P+ A+G W D +G +YLD +S++ VN GH +P+I AL++Q + L +
Sbjct: 37 LLPV----ARGEGAWLYDRDGRRYLDAISSW-WVNLFGHANPRINAALKDQLDTLEHAML 91
Query: 113 AFYNDKFPV-FAERLTSMFGYDM--VLPMNTGAEGVETALKLA----RKWGYV-KKKFSI 164
A + + AERL ++ G + + GA VE ALK++ R G K++F
Sbjct: 92 AGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREF-- 149
Query: 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLL---------------PGHLKVDF 208
V +HG T+ A+ ++ D + + PL+ PG D
Sbjct: 150 -----VCLANGYHGETIGALGVT-DVALFKDAYDPLIRHAHVVASPDARGARPGETAADV 203
Query: 209 GD--ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265
+ + ++F E +IA + EP +Q AG+ + YL+ +R LC +Y + +IADE
Sbjct: 204 AARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADE 263
Query: 266 IQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------ 319
I G R+G A + V PD + L K + GG +P+S VL+ + +
Sbjct: 264 IAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFL 323
Query: 320 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
H ++ GNPLA A+A+LD+ ++ + R+A LR L + V+ +R RG
Sbjct: 324 HSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQ--VRHLRQRG 381
Query: 380 LFNAVEFDKTALPVSAYDIC----LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 435
A FD +A ER +L +P T V L PP + +E+ ++
Sbjct: 382 TIFA--FDVALDGDAARTFSRRFFEAALERELLLRPIGTT-VYLMPPYVLDDDEIAWLAE 438
Query: 436 ALHDVLE 442
L+
Sbjct: 439 RTRATLD 445
|
Length = 453 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 8e-35
Identities = 111/432 (25%), Positives = 188/432 (43%), Gaps = 47/432 (10%)
Query: 41 QLINLEYEYSAHNYHPV---PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIM 97
L ++ + H Y + + G + +G+ +D +S++ + GH HP++
Sbjct: 3 SLREFDHRHIWHPYAAPGVRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLK 62
Query: 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKL 151
A +Q + + S + A +LT G D V ++G+ VE A+K+
Sbjct: 63 AAAHKQIDTM---SHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKM 119
Query: 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-----------AIRGFGPLL 200
A + Y K + + +++ +HG T AA+S+ CD E + F P
Sbjct: 120 ALQ--YSKGQGHPERTRLLTWRSGYHGDTFAAMSV-CDPEGGMHSLWKGTLPEQIFAPAP 176
Query: 201 PGHLKVDFGDITALEKIFKES----GDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS 255
P V + + + + +A + EPI QG G+ ++ VR LC
Sbjct: 177 P----VRGSSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCD 232
Query: 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 315
K++IL+IADEI +G R+G + A+ V PD++ +GKAL GG + +A L +V I
Sbjct: 233 KHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLI 292
Query: 316 QPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 369
HG TF NPLA AVA ASL++I ++ + EL L +
Sbjct: 293 STPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHL-- 350
Query: 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNE 429
V +VR G VE ++ PV + + G+ +P +V + PP +S +
Sbjct: 351 PGVADVRVLGAIGVVEMEQ---PVDMEEATQAAVDHGVWLRP-FGRLVYVMPPYITTSEQ 406
Query: 430 LQEGSKALHDVL 441
+ + AL +
Sbjct: 407 IAQICAALAAAV 418
|
Length = 422 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-32
Identities = 88/312 (28%), Positives = 152/312 (48%), Gaps = 40/312 (12%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFY 115
PIVF + KGS WD +GN+Y+D++ ++ GH +++ AL E +K T +
Sbjct: 82 PIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLE 141
Query: 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKK--KFSIDEAIIVSCC 173
N + + + S+ +MV +N+G E L+LAR + +K KF
Sbjct: 142 NVLAEMVIDAVPSV---EMVRFVNSGTEACMGVLRLARAYTGREKIIKFE---------- 188
Query: 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQI 225
GC+HG + + + A G P PG L + D+ A++K+F+ + +I
Sbjct: 189 GCYHGHADSFLVKAGSGVATLGL-PDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEI 247
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEE 283
A + EP+ G +G I+P +L+ +R++ + L++ DE+ +G +A G A ++
Sbjct: 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGG---AQEYFG 304
Query: 284 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDV 340
+ PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L
Sbjct: 305 ITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL-- 361
Query: 341 IRDEKLAERSAH 352
++L + +
Sbjct: 362 ---KRLQQPGTY 370
|
Length = 474 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 7e-27
Identities = 96/421 (22%), Positives = 174/421 (41%), Gaps = 56/421 (13%)
Query: 52 HNYHPV--PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109
+ V + +++G+ + D +GN+ LD S S++ G+ +P ++KA Q TL
Sbjct: 33 FDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTL 92
Query: 110 SSR-AFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKK- 161
+R A N +A+ L G D V +G++ E A K A + K++
Sbjct: 93 INRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRG 152
Query: 162 ----FSIDEAI--------------IVSCCGCFHGRTLAAISMSCDNEAIRGFG------ 197
FS +E I+S G FHGR ++S + ++ I
Sbjct: 153 YQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTR-SKPIHKLDIPAFDW 211
Query: 198 PLLP-------------GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
P P + K + + +E + K+ +A + EPIQ E G
Sbjct: 212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASP 271
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-WE-EVRPDMVILGKALGGGVIPV 302
+ + +RD+ K+N+ I DE+Q+G+ +G+ A + W + PDMV K
Sbjct: 272 DFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTA---- 327
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
+P +T+ G+P + + + I+ + L E AH+G+ L L
Sbjct: 328 -GYFFHDPAFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLE 386
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP 422
+Q+++P +++ +RG+G + +D T + K + G+ +RL P
Sbjct: 387 DLQKKYPEFIQNLRGKGRGTFIAWD-TPDEAKRDKLLKKARNNGVNIGGCGVKAIRLRPM 445
Query: 423 L 423
L
Sbjct: 446 L 446
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-26
Identities = 93/343 (27%), Positives = 141/343 (41%), Gaps = 70/343 (20%)
Query: 51 AHNY------HPV--PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE 102
AH Y +P P + G+ +WD +GN+Y+++ AV GH +P +++A++E
Sbjct: 16 AHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVRE 75
Query: 103 QAEKLTLSSRAFYNDKFPV-FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK 160
+ +R + AE + G DMV G++ A++LAR Y +
Sbjct: 76 ALQDGCNFTRP---SAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLAR--AYTGR 130
Query: 161 KFSIDEAIIVSCCG---------CFHGRT--LAAISMSCDNEAIRGFGPLLPGHLKVDFG 209
+V+ C F G T A I S + F +
Sbjct: 131 D-------LVARCADHPFFSTDDWFIGTTPMSAGIPAS-VSALTVTF----------RYN 172
Query: 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
DI +LE +F++ +IA + EP + P DG+L VR LC + L I DE+ +G
Sbjct: 173 DIASLEALFEDHPGRIACVILEPATADE----PQDGFLHEVRRLCHENGALFILDEMITG 228
Query: 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS------- 322
R A + PD+ GKALG G VSA+ +E M E G
Sbjct: 229 FRWHMRG-AQKLYGIVPDLSCFGKALGNG-FAVSALAGKREYM------ELGGLEHTDRE 280
Query: 323 -------TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 358
T G A A AIA++ + RDE + ER G +L
Sbjct: 281 RVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323
|
Length = 431 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 5e-22
Identities = 96/343 (27%), Positives = 140/343 (40%), Gaps = 74/343 (21%)
Query: 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK-LTL---SS 111
P P+ ++A+G+ D +G++Y DF + GH + +AL EQA + LT S
Sbjct: 56 PFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSE 115
Query: 112 RAFYNDKFPVFAERLTSMFGYDMVLPM----NTGAEGVETALKLARKWGYVKKKFSIDEA 167
A E L FG LP T + L+ AR A
Sbjct: 116 DAA------WVGEELARRFG----LPYWQVATTATDANRFVLRWAR-------------A 152
Query: 168 I-----IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH------LKVDFGDITALEK 216
+ I+ GC+HG D ++ G L H V+F D+ ALE
Sbjct: 153 VTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEA 212
Query: 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE---IQSGLARS 273
GD +A L EP G+++P G+ +A+R+L +Y L++ DE I SG
Sbjct: 213 ALA-DGD-VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY 270
Query: 274 GRMLASDWEEVRPDMVILGKALGGGVIP-----VSAVLAD--KEVMLCIQPGEH---GST 323
R + PD +++GK + GGV P SA LA+ + PG H G+T
Sbjct: 271 TRAHG-----LEPDFLVVGKPIAGGV-PCAVYGFSAELAERAQAAKASAPPG-HSGIGTT 323
Query: 324 FGGNPLASAVAIASL-DVIRDE------KLAERSAHLGEELRQ 359
N LA A A+L +V+ + LA R L LR
Sbjct: 324 LSANALAMAAMRATLAEVMTEAAYAHMLALAAR---LAAGLRA 363
|
Length = 453 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-12
Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 35/187 (18%)
Query: 122 FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 179
E+L + G D + + +G E AL G DE I+ + R
Sbjct: 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPG--------DEVIVDA--NGHGSR 54
Query: 180 TLAAISMSCDNEAIRGFG----PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 235
A ++ G P+ G + ++ +A + P
Sbjct: 55 YWVAAELA-------GAKPVPVPVDDAGY----GGLDVAILEELKAKPNVALIVITPNTT 103
Query: 236 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--K 293
GV++P K +R + +Y IL++ D +G A + D+V K
Sbjct: 104 SGGVLVPL----KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEG--GADVVTFSLHK 157
Query: 294 ALGGGVI 300
LGG
Sbjct: 158 NLGGEGG 164
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 32/223 (14%)
Query: 225 IAGFLFEP-IQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
IA + EP + G G ++I P + +A+ +C I +I DE+ +GL R G A +
Sbjct: 585 IAALIIEPVLHGAGGMLLIDP-LFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELL 643
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEV------------MLCIQPGEHGSTFGGNPLA 330
+PD+ K L GG++P++A LA +EV +L HG ++ +P+
Sbjct: 644 GCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL------HGHSYTAHPMG 697
Query: 331 SAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386
A A +L +D L + L E + L + PN V+ V G A+E
Sbjct: 698 CAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPN-VERVVSLGTVLALEL 756
Query: 387 DKTA-----LPVSAYDICLKM-KERGILAKPTHDTIVRLTPPL 423
D + A + ++ +E GI A+P + + + P
Sbjct: 757 DAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPT 799
|
Length = 817 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 11/164 (6%)
Query: 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
D ALE KE+ + L G + + L+ + DL ++NIL++ DE +G
Sbjct: 128 DFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYAG 186
Query: 270 LARSGRMLASDWEEV--RPDMVI---LGKALGGGVIPVSAVLADKEV---MLCIQPGEHG 321
+ + P++++ KA G V +L + V + + +
Sbjct: 187 FVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYS 246
Query: 322 STFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKI 364
ST A+A L V + E++ +R + LR L
Sbjct: 247 STHLQ-AAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA 289
|
Length = 357 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 31/173 (17%)
Query: 210 DITALEKIFKESGDQIAGFLFEPIQG---EAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266
D+ LE + +E+ + A +G G I P L + +L KY L+ DE
Sbjct: 154 DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEA 209
Query: 267 QS-G-LARSGRMLA-SDWEEVRPDMVI---LGKALG--GGVIPVSAVLADKEVMLCIQPG 318
+ G L +GR LA E +I LGKALG GG I SA L D
Sbjct: 210 HAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLR------- 262
Query: 319 EHGSTF----GGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLF 362
F P +A A+A+L ++ + E+L E +A L+
Sbjct: 263 NRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGL 315
|
Length = 388 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 23/250 (9%)
Query: 203 HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262
L + G + LE + + G ++ + L+ + +L K+ IL+I
Sbjct: 111 PLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEE-ELEELAELAKKHGILII 169
Query: 263 ADEIQSGLARSGR-MLASDWEEVRPDMVILG---KALGGGVIP---VSAVLADKEVMLCI 315
+DE + L G A + +++L K G +P + ++A E +L
Sbjct: 170 SDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG---LPGLRIGYLIAPPEELLER 226
Query: 316 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375
T G S A A+ +E L E R L + ++ V
Sbjct: 227 LKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRR-RDALLEALKELGPLVVVK 285
Query: 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI------VRLTPPLSISSNE 429
G F ++ + + + E G++ +P VRL+ + E
Sbjct: 286 PSGGFFLWLDLPE---GDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLS--FATPEEE 340
Query: 430 LQEGSKALHD 439
L+E + L +
Sbjct: 341 LEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 3e-04
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 35/145 (24%)
Query: 244 DG---YLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWE-EVRPD---MVILGKA 294
DG L + L ++ ++ DE L GR LA++ PD + LGKA
Sbjct: 181 DGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKA 240
Query: 295 LG--GGVIPVSAVLADKEVMLCIQPGEH----GSTF----GGNPLASAVAIASLDVIRDE 344
LG G AVL + + ++ F P +A A A+L ++R E
Sbjct: 241 LGSSGA-----AVLGSETL------IDYLINRARPFIFTTALPPAQAAAARAALRILRRE 289
Query: 345 -----KLAERSAHLGEELRQHLFKI 364
+LA A L LR F++
Sbjct: 290 PERRERLAALIARLRAGLRALGFQL 314
|
Length = 385 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.98 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.97 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.97 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.97 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.97 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK07324 | 373 | transaminase; Validated | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.96 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.96 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.96 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.96 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.96 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.96 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.96 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.96 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.96 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.96 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.96 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.96 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.95 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.95 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.95 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.95 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.95 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.95 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.95 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.95 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.95 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.95 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.95 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.95 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.95 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.95 | |
| PLN02656 | 409 | tyrosine transaminase | 99.95 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.95 | |
| PLN02187 | 462 | rooty/superroot1 | 99.95 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.95 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.95 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.95 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.95 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.94 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.94 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.94 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.94 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.94 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.94 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.94 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.94 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.94 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.94 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.93 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.93 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.93 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.93 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.93 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.93 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.93 | |
| PLN02231 | 534 | alanine transaminase | 99.93 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.93 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.93 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.93 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.93 | |
| PLN02721 | 353 | threonine aldolase | 99.93 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.93 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.93 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.93 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.93 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.92 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.92 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.92 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.92 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.92 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.92 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.92 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.92 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.92 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.92 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.92 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.92 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.91 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.91 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.91 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.91 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.91 | |
| PLN02397 | 423 | aspartate transaminase | 99.91 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.91 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.9 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.9 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.9 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.9 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.9 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.9 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.89 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.89 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.89 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.89 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.89 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.88 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.88 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.88 | |
| PLN02368 | 407 | alanine transaminase | 99.88 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.88 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.88 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.88 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.87 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.87 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.87 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.87 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.86 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.86 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.86 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.86 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.86 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.86 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.86 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.85 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.85 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.85 | |
| PLN02651 | 364 | cysteine desulfurase | 99.84 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.84 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.84 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.84 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.84 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.84 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.84 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.84 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.83 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.83 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.83 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.83 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.83 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.83 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.83 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.83 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.83 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.82 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.82 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.82 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.82 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.81 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.81 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.81 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.81 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.8 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.8 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.8 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.79 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.79 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.79 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.78 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.78 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.78 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.77 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.77 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.77 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.77 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.77 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.76 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.76 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.75 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.75 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.74 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.74 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.74 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.73 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.73 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.73 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.72 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.71 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.69 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.69 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.68 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.68 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.68 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.67 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.67 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.67 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.67 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.66 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.66 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.66 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.65 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.65 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.65 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.64 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.62 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.61 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.6 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.6 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.59 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.59 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.59 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.57 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.56 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.54 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.54 | |
| PLN02263 | 470 | serine decarboxylase | 99.54 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.51 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.49 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.48 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.44 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.44 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.44 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.44 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.41 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.37 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.36 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.33 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.32 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.31 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.31 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.29 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.28 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.27 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.26 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.22 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.19 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.18 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.15 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.1 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.09 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.05 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.04 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.95 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.94 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.92 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.82 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.8 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.77 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.59 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.56 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.55 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.52 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.5 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.24 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.23 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.13 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.09 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.78 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.91 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.4 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.91 |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-86 Score=622.87 Aligned_cols=395 Identities=43% Similarity=0.728 Sum_probs=378.2
Q ss_pred chHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC
Q 012138 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 117 (470)
++...++...+|..+.|.+.|+++++|+|+|+||.+|++||||.+|++++++||+||.+++++.+|++++.+.++.|+++
T Consensus 5 ~~~~~~~~~~~~~~~~Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~ 84 (404)
T COG4992 5 LTAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNE 84 (404)
T ss_pred cHHHHHHHHHHhhhcccCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCCh
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhhhC-CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 118 KFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 118 ~~~~l~~~l~~~~~-~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
...+|+++|++..+ .++|+|+|||+||||.|+|++|+|+. ++++.+||++.++|||+|++++++++++.++.+|
T Consensus 85 ~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~-----~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F 159 (404)
T COG4992 85 PQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTG-----DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGF 159 (404)
T ss_pred HHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcC-----CCCCcEEEEEcCCcCCccceeeeccCChhhccCC
Confidence 99999999999996 99999999999999999999999865 2457799999999999999999999999999999
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.|+.+++..+||||++++++++++ +|++||+||||+++|++.|+++|+++++++|++||++||.||||+|+||||++
T Consensus 160 ~Pl~~g~~~vpfnDi~al~~ai~~---~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~ 236 (404)
T COG4992 160 GPLLPGFRHVPFNDIEALEAAIDE---DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKL 236 (404)
T ss_pred CCCCCCceecCCCCHHHHHHHhcc---CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchH
Confidence 999999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~ 356 (470)
|+++++++.|||++++|++|||+ |+|++++++.+.+.+.++.|++||++||++|+++.++|+.+.++++.+++++++++
T Consensus 237 fA~e~~gV~PDI~tlaK~LgGG~-PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~ 315 (404)
T COG4992 237 FAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEY 315 (404)
T ss_pred HHHHHhCCCCCEEEeeccccCCc-cceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 99999999999999999999997 99999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
|+++|+++..+|| .+..+||.|+|+++++..+. .+.++++.|+++||++.+.+++++||.||+.+|+|||++++++
T Consensus 316 ~~~~L~~l~~~~~-~v~~vRG~GLmiGiel~~~~---~a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i~~eei~~~~~~ 391 (404)
T COG4992 316 LLQRLRELKRRYP-LVKEVRGRGLMIGIELKEPY---RARDIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDA 391 (404)
T ss_pred HHHHHHHHhhcCC-ceeeeecceeEEEEEecCcc---cHHHHHHHHHHCCeEEecCCCCeEEecCCccCCHHHHHHHHHH
Confidence 9999999999997 89999999999999998753 5789999999999999999999999999999999999999999
Q ss_pred HHHHHhcccC
Q 012138 437 LHDVLELDLP 446 (470)
Q Consensus 437 l~~~l~~~~~ 446 (470)
|+++++ ...
T Consensus 392 l~~~l~-~~~ 400 (404)
T COG4992 392 LERALA-AAS 400 (404)
T ss_pred HHHHHH-Hhh
Confidence 999998 653
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-83 Score=577.83 Aligned_cols=405 Identities=64% Similarity=1.064 Sum_probs=390.6
Q ss_pred CCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC
Q 012138 36 SSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY 115 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~ 115 (470)
+..|++.++.+.+|.+|+|.|+|+++.+++|+++||.+|++|+||.++|++.+.||+||.|.+++++|++++..+++.++
T Consensus 20 ~~aS~~~~~~E~k~~ahnyhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafY 99 (427)
T KOG1402|consen 20 TTASQQIMERENKYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFY 99 (427)
T ss_pred ccchhhhhchhhhcccccCCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccC
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 195 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 195 (470)
++...++++.+.++++.+.++.+|+|.||+|.|++++|+|+|..|++|.++.+|++..++|||+|.++++++.++....+
T Consensus 100 nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~ 179 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDG 179 (427)
T ss_pred hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred CCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012138 196 FGPLLPG-HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274 (470)
Q Consensus 196 ~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G 274 (470)
|+|+.|+ +..+||+|.++|+.++++ +++++|++||+|++.|++.|+++||++++++|++|++++|.||+|+|++|+|
T Consensus 180 fgp~~P~~~~~v~Y~d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTG 257 (427)
T KOG1402|consen 180 FGPFLPGVVDKVPYGDAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTG 257 (427)
T ss_pred cCCCCCCcceeeccCCHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccC
Confidence 9999998 899999999999999988 4899999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012138 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLG 354 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~ 354 (470)
+++++++.++.||++.|+|+++||++|++++++++++|..+.++.|++||++||++|+++.|+|+++.++++.++.+.++
T Consensus 258 k~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG 337 (427)
T KOG1402|consen 258 KLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLG 337 (427)
T ss_pred cEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-chhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~ 433 (470)
..|+.+|.+++.++|..+..+|++|++.++.+..... +.+++++|-.|+++|++..|.+++.+||+||++++++|+++.
T Consensus 338 ~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~~IiRfaPPL~I~e~dl~eg 417 (427)
T KOG1402|consen 338 EILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHGNIIRFAPPLVISEEDLREG 417 (427)
T ss_pred HHHHHHHHhccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCCCCeEEecCCcccCHHHHHHH
Confidence 9999999999999988899999999999999875443 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 012138 434 SKALHDVLE 442 (470)
Q Consensus 434 ~~~l~~~l~ 442 (470)
+++|.+++.
T Consensus 418 ~e~i~k~i~ 426 (427)
T KOG1402|consen 418 IEAIEKTIA 426 (427)
T ss_pred HHHHHHHhc
Confidence 999998874
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-75 Score=564.79 Aligned_cols=400 Identities=41% Similarity=0.704 Sum_probs=360.4
Q ss_pred CCCCchHHHHHHHhhhcccCCCC--CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 34 PSSSSSQQLINLEYEYSAHNYHP--VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
.+.+...+++++++++..+.+.. +|+++++++|+|+||.|||+||||.++.++.++||+||+|++|+.+|++++.+..
T Consensus 13 ~~~~~~~~~~~r~~~~~~r~~~~~~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~ 92 (447)
T COG0160 13 APGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTH 92 (447)
T ss_pred CCCcchHHHHHHHHHHhccccccccCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhccc
Confidence 34566778899988888877655 7999999999999999999999999999999999999999999999999998665
Q ss_pred CCC-CCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 RAF-YNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~~~-~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
..+ +.+...+++++|.+..+ .++++|++||+|||++|+|+++.++ |+..||+|.++|||+|.++++++
T Consensus 93 ~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~T--------gr~~viaf~~afHG~T~galslT 164 (447)
T COG0160 93 TRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYT--------GRPGVIAFDGAFHGRTLGALSLT 164 (447)
T ss_pred CCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHh--------CCCcEEEECCcccccchhhHHhc
Confidence 444 44889999999999874 5789999999999999999999873 67799999999999999999999
Q ss_pred CCccc-ccCCCCCCCCeeeecCCC-----------------HHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhh
Q 012138 188 CDNEA-IRGFGPLLPGHLKVDFGD-----------------ITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 188 ~~~~~-~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
+.... +..|.++.+++..+||++ .+.+++.+... +.++++||+||+|+++|.+.||++|
T Consensus 165 ~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~f 244 (447)
T COG0160 165 GSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGF 244 (447)
T ss_pred cCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHH
Confidence 87544 466888888888888753 23455544432 3579999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCC
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~ 326 (470)
+++|+++|++||+++|+||||+||||||++|+++++|+.||++|+||++++|+ |+|++++++++++ ..++.+++||++
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~-Pl~avv~r~ei~~-~~~g~~~~Tf~G 322 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGL-PLSAVVGRAEIMD-WPPGGHGGTFGG 322 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCC-ceeEEeccHHhcc-cCCcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998 9999999999999 778899999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLK 401 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~ 401 (470)
||++|+++.++|+.++++++.+++.+++++++++|.+++.++| .+.++||.|+|+++++..+.. ......++++
T Consensus 323 Npva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~-~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~ 401 (447)
T COG0160 323 NPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHP-LIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVAR 401 (447)
T ss_pred CHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcC-ceecccccceEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 999999999999999986421 3467889999
Q ss_pred HHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 402 MKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 402 l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|+++|+++..++ .+++||.||+++|+|++|+++++|+++|+ +.
T Consensus 402 ~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~-~~ 446 (447)
T COG0160 402 AFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALK-EA 446 (447)
T ss_pred HHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHH-hh
Confidence 999999998887 89999999999999999999999999998 54
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=547.25 Aligned_cols=467 Identities=78% Similarity=1.229 Sum_probs=400.5
Q ss_pred ccccccchhhhhHhhhcccCCCCCCCCCCCCC--CCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEec
Q 012138 3 SMGATRRNLHCLLSRVCRKRSYGAQPQGGTSP--SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDF 80 (470)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~ 80 (470)
||-.+++-+..+.++.|+..+..-...+.... .+..++++++.+++|..+.|.+.|+++++++|+|+||.||++||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~d~dG~~ylD~ 80 (474)
T PLN02624 1 SMALARRLLQRLARRSRRLRRRSYGALPEGSAPSLSDSSAHLIELEEKYSAHNYHPIPVVFSRAKGSRIWDPEGKKYLDF 80 (474)
T ss_pred CcchhhhHHHHHHHHHHHhhccccccCCCCCCCCCCcchHHHHHHHHHhhccccCCCCceEEeeeeCEEEECCCCEEEEc
Confidence 34456666667777777643222221111111 2345678999988888887778899999999999999999999999
Q ss_pred cCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 81 LSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 81 ~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
.+++++.++||+||+|++++.++++++.+.+..+.++...+++++|+++++.++++|++||+||++.|+++++.|+++++
T Consensus 81 ~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~ 160 (474)
T PLN02624 81 LSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKK 160 (474)
T ss_pred ccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999887766677888999999999999999999999999999999999999877776
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
|.++++..|+.+.++|||++.+++++++++..+..|.|..+++..++|+|++.++++++.+++++++|++||++|++|.+
T Consensus 161 g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v 240 (474)
T PLN02624 161 GIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVV 240 (474)
T ss_pred CCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCc
Confidence 66556778999999999999999999988878888888888889999999999999998766789999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCc
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH 320 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~ 320 (470)
+|+++|+++|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++++|++|+|++++++++++.+.+..+
T Consensus 241 ~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~ 320 (474)
T PLN02624 241 IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEH 320 (474)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCc
Confidence 98899999999999999999999999999999999988888899999999999999884499999999999998877788
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-chhHHHHH
Q 012138 321 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDIC 399 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~ 399 (470)
++||++++++++++.++|+.++++++.+++.++++++++.|+++..++|..+..+++.|+++.+.++.+.. ...+.+++
T Consensus 321 ~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~ 400 (474)
T PLN02624 321 GSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVC 400 (474)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHH
Confidence 89999999999999999999988889999999999999999999877765577889999999998864321 12467899
Q ss_pred HHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCC---CCCCCCCCCCCcccccccC
Q 012138 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK---PKPADAPATPCHRCGRNLY 469 (470)
Q Consensus 400 ~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 469 (470)
+.|+++||++.|.+.+++||+||+.+|+++|++++++|++++...+..+++ .+......++|+|||++.|
T Consensus 401 ~~L~e~GV~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (474)
T PLN02624 401 LKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHDLPKLQSAKKEKTPKAAPTPCDRCGRNLY 473 (474)
T ss_pred HHHHhCCeEEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCCCChhhhhhhhcc
Confidence 999999999999888999999999999999999999999998722333433 2223335789999999988
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-69 Score=518.71 Aligned_cols=398 Identities=35% Similarity=0.583 Sum_probs=349.8
Q ss_pred HHHHhhhcccCCCC------CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCC
Q 012138 43 INLEYEYSAHNYHP------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFY 115 (470)
Q Consensus 43 ~~~~~~~~~~~~~~------~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 115 (470)
++.+++|.+|.|.. .|.++++++|.|+||.+||+|||..+++|.++.||+||++.+|+.+|++++.+.. ..+.
T Consensus 6 ~~~d~~~~whP~t~~~~~~~~~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t 85 (449)
T COG0161 6 LAADLSHLWHPFTQMRDPLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFT 85 (449)
T ss_pred hhhhhhheeccccccccccccceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccC
Confidence 33477888886531 2789999999999999999999999999999999999999999999999998874 3456
Q ss_pred CCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 116 NDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
+++..+|+++|+++.+ +++|||++|||+|++.|+|+++.|+ ..+|.|. ++++|+...+|||.|.+++++++....
T Consensus 86 ~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~-~~~G~p~-r~~~Isr~~gYHG~T~ga~Sv~g~~~~ 163 (449)
T COG0161 86 HEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYW-RARGQPQ-RKKFISRRNGYHGDTLGAMSVGGPVAL 163 (449)
T ss_pred CchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHH-HhcCCCc-ceEEEEeccCcCcccchheeccCchhh
Confidence 7779999999999986 8899999999999999999999874 4455544 678999999999999999999995444
Q ss_pred c-cCCCCCCCCeeeecCC-----------------CHHHHHHHHHhcC-CCeEEEEEccccCC-CccccCChhhHHHHHH
Q 012138 193 I-RGFGPLLPGHLKVDFG-----------------DITALEKIFKESG-DQIAGFLFEPIQGE-AGVIIPPDGYLKAVRD 252 (470)
Q Consensus 193 ~-~~~~~~~~~~~~~~~~-----------------d~~~Le~~l~~~~-~~~~~vi~epi~n~-~G~~~~~~~~l~~l~~ 252 (470)
+ ..|.++.+++.+++.+ +.++||++|.+++ +++++||+||+.+. +|.++|++.|++++++
T Consensus 164 ~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~ 243 (449)
T COG0161 164 RHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVRE 243 (449)
T ss_pred hhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHH
Confidence 4 5555566654444322 2577899998887 79999999997666 9999999999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC-----CccCCCCCC
Q 012138 253 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFGGN 327 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~~ 327 (470)
+|++|||+||+|||.+||||||++|+++++++.||+++++|+++|||+|+|++++++++.+.+... .|+.||++|
T Consensus 244 iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsgh 323 (449)
T COG0161 244 ICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGN 323 (449)
T ss_pred HHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999888653 689999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc------hhHHHHHHH
Q 012138 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP------VSAYDICLK 401 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~ 401 (470)
|++||+|++.|++++++++.+++++++.+|.+.|+++...+| .+.++|+.|++.++++..+... .....+.+.
T Consensus 324 PlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p-~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~ 402 (449)
T COG0161 324 PLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHP-LVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAA 402 (449)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCC-cEEEeeccceEEEEEEecccccccchhhhHHHHHHHH
Confidence 999999999999999999999999999999999998544444 8999999999999999776521 126688889
Q ss_pred HHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 402 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 402 l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++++|++++|. ++.+-++||+++|++||+++++++.++++ +.
T Consensus 403 ~~e~Gl~iRp~-g~~i~~~PPliit~~eid~l~~~l~~al~-~~ 444 (449)
T COG0161 403 ALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALD-ET 444 (449)
T ss_pred HHHCCeEEeec-CCEEEEcCCccCCHHHHHHHHHHHHHHHH-HH
Confidence 99999999998 66999999999999999999999999998 54
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=520.62 Aligned_cols=376 Identities=36% Similarity=0.656 Sum_probs=339.1
Q ss_pred ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeE
Q 012138 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMV 135 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v 135 (470)
+++++++.|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+.+..+.++...+++++|++..+ .+++
T Consensus 58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v 137 (442)
T TIGR03372 58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYS 137 (442)
T ss_pred eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEE
Confidence 34566777799999999999999999999999999999999999999988776655668888999999999874 4789
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHH
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALE 215 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le 215 (470)
+|+|||+||++.|+|+++.|+.. .|+..||++.++|||++.+++++++.+.++..|.|+.+++..+|++|.++++
T Consensus 138 ~f~~SGsEA~e~AlklAr~~t~~-----~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~ 212 (442)
T TIGR03372 138 FFCNSGTESVEAALKLAKAYQSP-----RGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAML 212 (442)
T ss_pred EEeCCchHHHHHHHHHHHHHHhh-----cCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHH
Confidence 99999999999999999986321 2567899999999999999999998877778888888889999999999998
Q ss_pred HHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc
Q 012138 216 KIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292 (470)
Q Consensus 216 ~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s 292 (470)
+.+++ +++++++||+||+++.+|.+.|+++|+++++++|++||+++|+||||+||||+|++|+++++++.||++++|
T Consensus 213 ~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g 292 (442)
T TIGR03372 213 KALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLA 292 (442)
T ss_pred HHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeeh
Confidence 88864 345899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceeEEEecHHHHhhc--CcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012138 293 KALGGGVIPVSAVLADKEVMLCI--QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 370 (470)
Q Consensus 293 K~l~gG~~~ig~v~~~~~~~~~~--~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~ 370 (470)
|+++||++|+|++++++++++.+ .+..+++||++||++|+++.++|+.++++++.++++++++++++.|+++..++|.
T Consensus 293 K~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~ 372 (442)
T TIGR03372 293 KALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPD 372 (442)
T ss_pred hhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999966999999999999888 3446889999999999999999999999899999999999999999999888865
Q ss_pred ceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.+.++++.|+|+++++..+. ....+++.|+++||++.+. ..+.+||.||+.+|++|+++++++|++++
T Consensus 373 ~i~~vRG~Gl~~giel~~~~---~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 373 LIIEARGKGLLMAIEFRDNE---IGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred ceEEEecceEEEEEEeCChH---HHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 78899999999999997653 5678999999999999754 35899999999999999999999999874
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-67 Score=527.01 Aligned_cols=402 Identities=28% Similarity=0.455 Sum_probs=344.7
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
++++++.++++.++.+. ..|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~ 82 (459)
T PRK05965 3 SNSLIELDRAHLIHPVASYRGHEARGVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYAT 82 (459)
T ss_pred hHHHHHhhhhccccccccccccccCCCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcc
Confidence 45566666666554331 23789999999999999999999999999999999999999999999999877654
Q ss_pred C--CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R--AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~--~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. .+.++...+|+++|++.. +.++++|++||+||++.|+|+++.|+.. +| .+++.+||++.++|||++.++++++
T Consensus 83 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~-~g-~~~r~kii~~~~~YHG~t~~a~s~t 160 (459)
T PRK05965 83 GYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNA-TG-RPSKKQFISLERGYHGSSSVGAGLT 160 (459)
T ss_pred cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHh-cC-CCCccEEEEecCCcCcccHHHHHhc
Confidence 3 345777889999999987 4679999999999999999999986432 12 1356789999999999999999998
Q ss_pred CCcccccCCCCCCCCeeeecC---------CC--------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDF---------GD--------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~---------~d--------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+.+.++..|.+..+....+++ +| ++++++++++++ +++++||+||+++.+|.+.|+++|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~ 240 (459)
T PRK05965 161 ALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKA 240 (459)
T ss_pred CCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHH
Confidence 877667777766555443332 23 257888887654 689999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGS 322 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~ 322 (470)
|+++|++||++||+|||++||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+.. ..+++
T Consensus 241 lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~ 320 (459)
T PRK05965 241 MREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGY 320 (459)
T ss_pred HHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999996699999999999988753 25889
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c-----hh
Q 012138 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P-----VS 394 (470)
Q Consensus 323 t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~-----~~ 394 (470)
||++||++|+++.++|++++++++.+++++++++|.++|+++. ++| .+.++++.|+++++++..+.. . ..
T Consensus 321 T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~~-~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~ 398 (459)
T PRK05965 321 TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AHP-LVGDVRGRGLLGALELVADKATKTPFDAALDP 398 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cCC-CEEEEeecceEEEEEEeccccccCCCCchhHH
Confidence 9999999999999999999999999999999999999999985 465 889999999999999854220 0 12
Q ss_pred HHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 395 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 395 ~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
...+.+.|+++||++.+.+.+++|++||+++|++||++++++|.++++ ++
T Consensus 399 ~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~-~~ 448 (459)
T PRK05965 399 ADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLD-DV 448 (459)
T ss_pred HHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHH-HH
Confidence 457888999999999887778999999999999999999999999999 86
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=524.39 Aligned_cols=384 Identities=35% Similarity=0.651 Sum_probs=347.9
Q ss_pred CCceEEEeecC-CEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--C
Q 012138 56 PVPIVFSQAKG-SSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--Y 132 (470)
Q Consensus 56 ~~p~~~~~~~g-~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~ 132 (470)
++|+++.+++| +|+||.||++||||.+++++.++||+||+|.+++.+|++++.+.+..+.++...+++++|++..+ .
T Consensus 62 ~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~ 141 (459)
T PRK11522 62 DYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKL 141 (459)
T ss_pred CCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCC
Confidence 55789999999 99999999999999999999999999999999999999998776665678888999999999874 5
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHH
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
++++|+|||+||++.|+|+++.++ .+ .++..||++.++|||++.+++++++.+.++.+|.+..+++..+|++|.+
T Consensus 142 ~~v~f~~SGsEAve~AlklAr~~t--~~---~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~ 216 (459)
T PRK11522 142 KYSFFCNSGTESVEAALKLAKAYQ--SP---RGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIE 216 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHh--cc---CCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHH
Confidence 789999999999999999999863 21 1466899999999999999999998887888888888888999999999
Q ss_pred HHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee
Q 012138 213 ALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV 289 (470)
Q Consensus 213 ~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~ 289 (470)
++++++++ +++++++||+||+++.+|.+.|+++|+++++++|++||+++|+||||+||||+|++|+++++++.||++
T Consensus 217 ~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv 296 (459)
T PRK11522 217 AMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDIL 296 (459)
T ss_pred HHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEE
Confidence 99999864 235799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCcceeEEEecHHHHhhcC--cCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 290 ILGKALGGGVIPVSAVLADKEVMLCIQ--PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 290 s~sK~l~gG~~~ig~v~~~~~~~~~~~--~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++||+++||++|+|++++++++++.+. +..+++||++||++|+++.++|+.++++++.+++++++++|++.|+++..+
T Consensus 297 t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~ 376 (459)
T PRK11522 297 CLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLARE 376 (459)
T ss_pred EechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999669999999999998774 446889999999999999999999999899999999999999999999888
Q ss_pred CCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 368 FPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 368 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+|..+.++++.|+++.+++..+. ....+++.|+++||++.+. +.+++||.||+.+|++||++++++|.++++ ++
T Consensus 377 ~~~~i~~VrG~Gl~~giel~~~~---~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~-~~ 452 (459)
T PRK11522 377 YPDLVQEARGKGMLMAIEFVDNE---IGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALA-AM 452 (459)
T ss_pred CCCceeeEEeceeEEEEEecCch---HHHHHHHHHHHCCeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHH-HH
Confidence 76567899999999999997643 5678999999999999765 468999999999999999999999999998 76
Q ss_pred CCC
Q 012138 446 PKM 448 (470)
Q Consensus 446 ~~~ 448 (470)
.+.
T Consensus 453 ~~~ 455 (459)
T PRK11522 453 RVS 455 (459)
T ss_pred HHh
Confidence 543
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=525.66 Aligned_cols=404 Identities=26% Similarity=0.420 Sum_probs=348.1
Q ss_pred chHHHHHHHhhhcccCCC---------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc
Q 012138 38 SSQQLINLEYEYSAHNYH---------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~---------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 108 (470)
+++++.+..+++.++.+. ..|+++++++|+++||.|||+||||.+++++.++||+||+|.+++.+|++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~ 83 (461)
T PRK07482 4 KIDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELA 83 (461)
T ss_pred cHHHHHHhhhhhccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 467777777777666553 23789999999999999999999999999999999999999999999999976
Q ss_pred ccC--CCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh
Q 012138 109 LSS--RAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 109 ~~~--~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~ 184 (470)
+.. ..+.++...+++++|++..+ .++++|++||+||++.|+|+++.|+.. ++. +++.+||++.++|||++.++.
T Consensus 84 ~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~-~g~-~~r~~Ii~~~~~YHG~t~ga~ 161 (461)
T PRK07482 84 YYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNV-LGR-PEKKKIISRWRGYHGSGVVTG 161 (461)
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHh-cCC-CCCceEEEecCccCCccHhhh
Confidence 433 24567888999999999873 689999999999999999999986321 121 356789999999999999999
Q ss_pred cccCCcccccCCCCCCCCeeeecCC------------------CHHHHHHHHHhc-CCCeEEEEEccccCCCccccCChh
Q 012138 185 SMSCDNEAIRGFGPLLPGHLKVDFG------------------DITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------d~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
++++.+.++..|.+..+++..++++ ++++|++++... ++++++||+||+++.+|.+.|+++
T Consensus 162 s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~ 241 (461)
T PRK07482 162 SLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAG 241 (461)
T ss_pred hccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHH
Confidence 9998777777777776665544322 357788888543 357999999999999999999999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------C
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------G 318 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~ 318 (470)
|+++|+++|++||++||+|||++||||+|++|+++++|+.||+++++|+++||++|+|++++++++++.+.. .
T Consensus 242 yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~ 321 (461)
T PRK07482 242 YWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI 321 (461)
T ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCcc
Confidence 999999999999999999999999999999999999999999999999999996699999999999887752 2
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c---
Q 012138 319 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P--- 392 (470)
Q Consensus 319 ~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~--- 392 (470)
.|++||++||++|+++.++|+.++++++.+++++++++|++.|+++..++| .+.++++.|+|+++++..+.. .
T Consensus 322 ~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Glm~giel~~~~~~~~~~~~ 400 (461)
T PRK07482 322 GHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHP-LVGEVRGVGMLAAVEFVADRDDRTPFDP 400 (461)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEeeceeEEEEEeccCCCcCCCCCh
Confidence 588999999999999999999999999999999999999999999988886 889999999999999964321 0
Q ss_pred --hhHHHHHHHHHHcCceeccC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 393 --VSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 393 --~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.....++..|+++||++.+. .++.+||.||+.+|++||++++++|+++++ ++
T Consensus 401 ~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~-~~ 455 (461)
T PRK07482 401 ALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVD-EV 455 (461)
T ss_pred hhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 12467889999999998653 368999999999999999999999999998 65
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-66 Score=520.56 Aligned_cols=406 Identities=30% Similarity=0.499 Sum_probs=347.8
Q ss_pred CchHHHHHHHhhhcccCC---C-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC
Q 012138 37 SSSQQLINLEYEYSAHNY---H-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~---~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 112 (470)
.+++++++.++++.++.+ . ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+++.+|++++.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~ 84 (451)
T PRK07678 5 KQTDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL 84 (451)
T ss_pred cCHHHHHHHhhcccCCCccccccCCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc
Confidence 457788887777765442 2 237999999999999999999999999999999999999999999999998876555
Q ss_pred CCCCCcHHHHHHHHhhhhC-CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 113 AFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~-~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
.+.++...+++++|++..+ .++++|++||+||++.|+|+++.|+.. +| .+++..||.+.++|||++.+++++++.+.
T Consensus 85 ~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~-~g-~~~r~~ii~~~~~yHG~t~~als~~~~~~ 162 (451)
T PRK07678 85 TQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQ-KG-EPHRYKFISRYRAYHGNSMGALAATGQAQ 162 (451)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHh-cC-CCCCcEEEEECCCcCCccHHHhhcCCCcc
Confidence 5667788999999999875 358999999999999999999986422 12 23567899999999999999999988776
Q ss_pred cccCCCCCCCCeeeecCCC-----------------HHHHHHHHH-hcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 192 AIRGFGPLLPGHLKVDFGD-----------------ITALEKIFK-ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~-~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
++..|.+..+++..+++++ +++++++++ .+++++++||+||+++.+|.+.|+++|+++|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~l 242 (451)
T PRK07678 163 RKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEI 242 (451)
T ss_pred cccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence 6777777777665555432 234677775 3346899999999999999999999999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc------CCccCCCCCC
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------GEHGSTFGGN 327 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~------~~~~~t~~~~ 327 (470)
|++||++||+||||+||||+|++|+++++|+.||+++++|+++||++|+|++++++++++.+.. ..+++||++|
T Consensus 243 c~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gn 322 (451)
T PRK07678 243 CQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGN 322 (451)
T ss_pred HHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcC
Confidence 9999999999999999999999999999999999999999999995599999999999998864 2488999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------chhHHHHHHH
Q 012138 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------PVSAYDICLK 401 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~ 401 (470)
|++|+++.++|+.++++++.+++++++++|++.|+++..++| .+..+++.|+|+.+++..+.. ......++..
T Consensus 323 p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~ 401 (451)
T PRK07678 323 PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAA 401 (451)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHH
Confidence 999999999999999999999999999999999988777775 788999999999999853210 1235678899
Q ss_pred HHHcCceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 402 MKERGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 402 l~~~Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|+++||++.+. ..+.+||+||+.+|++||++++++|.++++ +++
T Consensus 402 l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~-~~~ 451 (451)
T PRK07678 402 CKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALE-RIK 451 (451)
T ss_pred HHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH-hcC
Confidence 99999998753 247899999999999999999999999998 753
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=516.58 Aligned_cols=401 Identities=26% Similarity=0.423 Sum_probs=345.7
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
.+++.+.++++.++.+. ..|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+|++++.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~ 90 (453)
T PRK06943 11 TDDWVARSLRAVWHPCTQMKHHERLPLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAM 90 (453)
T ss_pred hhhHHHHhhcccccCCcCccccccCCCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcc
Confidence 34466666666544332 24789999999999999999999999999999999999999999999999876654
Q ss_pred C-CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 112 R-AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 112 ~-~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
. .+.++...+++++|++..+ .++++|++||+||++.|+|++++|+. .++. +++.+||.+.++|||++.+++++++
T Consensus 91 ~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~-~rg~-~~r~~Ii~~~~~yHG~t~gals~~~ 168 (453)
T PRK06943 91 LAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWR-NRGR-GDKREFVCLANGYHGETIGALGVTD 168 (453)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHH-HhCC-CCCCEEEEECCCcCCCcHHhhcccC
Confidence 3 3567788999999999875 46999999999999999999987632 1221 3567899999999999999999999
Q ss_pred CcccccCCCCCCCCeeeecCCC-----------------HHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHH
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAV 250 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l 250 (470)
...++..|.+..+++..+++++ +++++++++++++++++||+|| +++.+|.+.|+++|+++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~l 248 (453)
T PRK06943 169 VALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGL 248 (453)
T ss_pred ChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHH
Confidence 8777777888776655555432 4788888886667999999999 599999999999999999
Q ss_pred HHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc------CCccCCC
Q 012138 251 RDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------GEHGSTF 324 (470)
Q Consensus 251 ~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~------~~~~~t~ 324 (470)
+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+.. ..+++||
T Consensus 249 r~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~ 328 (453)
T PRK06943 249 RALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSY 328 (453)
T ss_pred HHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999996699999999999988753 2488999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHH
Q 012138 325 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKM 402 (470)
Q Consensus 325 ~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l 402 (470)
++||++|+++.++|+.++++++.+++++++++|+++|+++.. +| .+.++++.|+|+.+++..+.. ......+.+.|
T Consensus 329 ~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~-~~-~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~ 406 (453)
T PRK06943 329 TGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAA-HP-QVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAA 406 (453)
T ss_pred CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CC-CEEeEeccccEEEEEEccCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999854 65 788999999999999963221 11256788999
Q ss_pred HHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 403 KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 403 ~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++||++.+.+ +.+||+||+.+|++||++++++|+++|+ ++
T Consensus 407 ~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~~~~l~~al~-~~ 447 (453)
T PRK06943 407 LERELLLRPIG-TTVYLMPPYVLDDDEIAWLAERTRATLD-AT 447 (453)
T ss_pred HHCCcEEEecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHH-HH
Confidence 99999998764 6899999999999999999999999998 75
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=476.38 Aligned_cols=392 Identities=31% Similarity=0.535 Sum_probs=339.7
Q ss_pred CCchHHHHHHHhhhccc---CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC
Q 012138 36 SSSSQQLINLEYEYSAH---NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 112 (470)
.+.+....+..++.... .+...|+++.+++|.|+||.+|++|||+.+|.+..++||+||+|++++.+|+..+.+...
T Consensus 8 ~~~~~~~~~~~~~~ls~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~ 87 (442)
T KOG1404|consen 8 GPSTDQVLQKRRAFLSPGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTS 87 (442)
T ss_pred CcchhhHHHHhhhcCCcceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeec
Confidence 34455555555555433 344569999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 113 AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
.|.+++..++++.|.+.+ +.+.++|+|||+|||++|+++++.|+ +.-.||++..+|||.+..++++++..
T Consensus 88 ~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt--------~~~diIa~r~~YHG~t~~t~glt~~~ 159 (442)
T KOG1404|consen 88 GYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYT--------GNLDIIARRNSYHGNTLYTLGLTGLS 159 (442)
T ss_pred cccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhc--------CCceEEEeeccccCCchhhcccccCC
Confidence 889999999999999988 46789999999999999999999873 66799999999999999999999987
Q ss_pred ccccCCCCCC--------CCeeeecCCC----------HHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 191 EAIRGFGPLL--------PGHLKVDFGD----------ITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 191 ~~~~~~~~~~--------~~~~~~~~~d----------~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
.++.++.... |+.+..++.+ .+++++.+... +..++++|+|++++-+|.+.+++.|++++.
T Consensus 160 ~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~ 239 (442)
T KOG1404|consen 160 PWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAY 239 (442)
T ss_pred cccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHH
Confidence 7766554332 2222222222 25566666443 357999999999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCC-ccCCCCCCHHH
Q 012138 252 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-HGSTFGGNPLA 330 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~-~~~t~~~~~~~ 330 (470)
++|+++|.++|.||||+||||+|.+|++++.++.|||+|++|++|+|+ |+|+++.++++++.+.... +.+||++||++
T Consensus 240 ~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~-Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a 318 (442)
T KOG1404|consen 240 KVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGF-PLGAVVTTPEIADVLNQKSSHFNTYGGNPVA 318 (442)
T ss_pred HHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCC-cceeeecCHHHHHHHHhccccccccCCCchh
Confidence 999999999999999999999999999999999999999999999997 9999999999999997665 89999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------chhHHHHHHHHHH
Q 012138 331 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------PVSAYDICLKMKE 404 (470)
Q Consensus 331 ~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~l~~ 404 (470)
|+++.++|++++++++.++..+.+.+|++.|.++..++| .+.++||.|+|+++++..+.. ......+.+.|++
T Consensus 319 ~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~-iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke 397 (442)
T KOG1404|consen 319 CAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHP-IIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKE 397 (442)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC-ceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 999999999999999976652 1234567889999
Q ss_pred cCceeccC--CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 405 RGILAKPT--HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 405 ~Gv~~~~~--~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.|+++..+ .++++|++||+++|+||++.+++..
T Consensus 398 ~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 398 LGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred hCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence 99999655 3779999999999999997777755
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=515.83 Aligned_cols=402 Identities=26% Similarity=0.426 Sum_probs=344.8
Q ss_pred chHHHHHHHhhhcccCCCC-------C-ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc
Q 012138 38 SSQQLINLEYEYSAHNYHP-------V-PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-------~-p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 109 (470)
.++++++.+.++.++.+.+ . |+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~ 98 (472)
T PRK08742 19 TAEHWRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQ 98 (472)
T ss_pred cHHHHHHhhhcccccCCcccccccccCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCC
Confidence 4567777776766543322 2 4679999999999999999999999999999999999999999999998765
Q ss_pred cCC-CCCCCcHHHHHHHHhhhhC-------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcccccc
Q 012138 110 SSR-AFYNDKFPVFAERLTSMFG-------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181 (470)
Q Consensus 110 ~~~-~~~~~~~~~l~~~l~~~~~-------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~ 181 (470)
... .+.++...+++++|.+..+ .++++|++||+||++.|+|+++.|+.. +| .+++.+||++.++|||++.
T Consensus 99 ~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~-~g-~~~r~~ii~~~~syHG~t~ 176 (472)
T PRK08742 99 VMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHN-RG-EHRRTRFIALENGYHGETI 176 (472)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHh-cC-CCCCcEEEEECCCcCCCch
Confidence 543 4567788999999998764 469999999999999999999986432 12 1356799999999999999
Q ss_pred chhcccCCcccccCCCCCCCCeeeecCCC-----------------HHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCC
Q 012138 182 AAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPP 243 (470)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~ 243 (470)
+++++++.+.++..|.|..+++..+|+++ ++.+++++.++++++++||+|| +++.+|.+.|+
T Consensus 177 gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p 256 (472)
T PRK08742 177 GALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHH 256 (472)
T ss_pred hhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCC
Confidence 99999987777778888777766666543 4677888876557899999999 69999999999
Q ss_pred hhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc------
Q 012138 244 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------ 317 (470)
Q Consensus 244 ~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~------ 317 (470)
++|+++|+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+..
T Consensus 257 ~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~ 336 (472)
T PRK08742 257 PAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERA 336 (472)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCc
Confidence 99999999999999999999999999999999999999999999999999999996699999999999987742
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c--
Q 012138 318 GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P-- 392 (470)
Q Consensus 318 ~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~-- 392 (470)
..+++||++||++|+++.++|++++++++.+++++++++|++.++.+ .++| .+.++++.|+++++++..+.. .
T Consensus 337 ~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~~-~i~dvRG~Gl~~giel~~~~~~~~~~~ 414 (472)
T PRK08742 337 FLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEHP-HVADVRQAGMVVAFELTRGGNKRTPFP 414 (472)
T ss_pred cCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcCC-CeeeEeccceEEEEEeccCccccccCC
Confidence 25789999999999999999999999999999999999999877776 4465 789999999999999964321 0
Q ss_pred ---hhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 393 ---VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 393 ---~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.....+.+.|+++||++.+. +++|||.||+++|++||++++++|+++|+ ++
T Consensus 415 ~~~~~~~~~~~~~~~~Gll~~~~-g~vi~~~PpL~it~~ei~~~~~~l~~~l~-~~ 468 (472)
T PRK08742 415 PAARVGLHAYRAALARGVVLRPL-GDVLYWMPPYCVDEAQLALLADTTRHAID-EA 468 (472)
T ss_pred chhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 01356788999999999876 47999999999999999999999999998 64
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=513.99 Aligned_cols=401 Identities=30% Similarity=0.493 Sum_probs=342.7
Q ss_pred CCCCCCchHHHHHHHhhh--cccCC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc-
Q 012138 32 TSPSSSSSQQLINLEYEY--SAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL- 107 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~- 107 (470)
+-|+ .+.+++++...+| ....+ .+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+++.
T Consensus 18 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~ 96 (464)
T PRK06938 18 TLYE-FSNSPLLERQSRRESNARSYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADEL 96 (464)
T ss_pred CCcc-ccHHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhh
Confidence 4444 3455777776655 34444 35789999999999999999999999999999999999999999999999753
Q ss_pred cccCCCCCCCcHHHHHHHHhhhhCC-----CeEEec-CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcccccc
Q 012138 108 TLSSRAFYNDKFPVFAERLTSMFGY-----DMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181 (470)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~ 181 (470)
.+....+.++...+++++|.+..+. ++++|+ |||+||++.|+|+++.+ +|+..||.+.++|||++.
T Consensus 97 ~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~--------tgr~~ii~~~~~yHG~t~ 168 (464)
T PRK06938 97 PLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTA--------TGRSTVLSFQGGYHGMSQ 168 (464)
T ss_pred cccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHh--------hCCCeEEEECCccCCccH
Confidence 2333345678889999999987642 367665 89999999999999986 367799999999999999
Q ss_pred chhcccCCcccccCCCCCCCCeeeecCC-----------------CHHHHHHHHHhcC---CCeEEEEEccccCCCcccc
Q 012138 182 AAISMSCDNEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFKESG---DQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~ 241 (470)
+++++++...++..|.+..+++..+|++ +++.+++++.+.. +++++||+||+++.+|.+.
T Consensus 169 ~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~ 248 (464)
T PRK06938 169 GALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIP 248 (464)
T ss_pred HHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcC
Confidence 9999988766667777776665555543 2567888887532 3799999999999999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCcc
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG 321 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~ 321 (470)
|+++|+++|+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||+ |+|++++++++ +.+.+..++
T Consensus 249 p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~-PlsAv~~~~~~-~~~~~~~~~ 326 (464)
T PRK06938 249 APIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSL-PLAVVVYREWL-DTWQPGAHA 326 (464)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCC-ceEEEeehhHh-hccCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999997 99999999885 777667789
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------
Q 012138 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------- 391 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---------- 391 (470)
+||++||++|+++.++|+.++++++.+++++++++|++.|+++..++| .+.++++.|+|+++++..+..
T Consensus 327 ~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~ 405 (464)
T PRK06938 327 GTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYP-QLGDVRGRGLMLGVEIVDPQGEPDALGHPPA 405 (464)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEeccCcccccccccCCc
Confidence 999999999999999999999999999999999999999999988886 899999999999999964310
Q ss_pred -chhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 392 -PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 392 -~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
......+++.|+++||++.+.+ .+++||.||+++|++|+++++++|++++. ++
T Consensus 406 ~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~-~~ 461 (464)
T PRK06938 406 NGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVA-AA 461 (464)
T ss_pred cHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH-HH
Confidence 0124568889999999997653 58999999999999999999999999998 63
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-65 Score=512.10 Aligned_cols=400 Identities=28% Similarity=0.456 Sum_probs=344.0
Q ss_pred HHHHHHHhhhcccCCC------CC-ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC
Q 012138 40 QQLINLEYEYSAHNYH------PV-PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~------~~-p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 112 (470)
+++++.++++.++.+. +. |+++++++|+++||.||++||||.+++++.++||+||+|.+++.+|++++.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~ 84 (466)
T PRK07030 5 DQWMQRDLKVLWHPCTQMKDHEQLPLIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVIL 84 (466)
T ss_pred HHHHhhhhcccccccccccccccCCCceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence 3455555555443322 23 3689999999999999999999999999999999999999999999998766543
Q ss_pred -CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 113 -AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 113 -~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
.+.++...+++++|++..+ .++++|++||+||++.|+|+++.|+.. ++. +++.+||++.++|||++.+++++++.
T Consensus 85 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~-~g~-t~r~~ii~~~~~yHG~t~ga~s~~~~ 162 (466)
T PRK07030 85 AGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRN-RGK-PRKKRFVTLTNSYHGETLAAMSVGDV 162 (466)
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHH-hCC-CCCcEEEEECCCcCcccHHHHhccCC
Confidence 4677888999999999873 679999999999999999999986321 111 35678999999999999999999887
Q ss_pred cccccCCCCCCCCeeeecCCC-----------------HHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHH
Q 012138 190 NEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~ 251 (470)
+.++..|.|..+++..+|+++ ++++++++.++++++++||+|| +++.+|.+.|+++|+++|+
T Consensus 163 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr 242 (466)
T PRK07030 163 ALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR 242 (466)
T ss_pred ccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence 777777777776666665433 5678888876667899999999 7999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCCC
Q 012138 252 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTF 324 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t~ 324 (470)
++|++||++||+||||+||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+.. ..+++||
T Consensus 243 ~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~ 322 (466)
T PRK07030 243 EACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY 322 (466)
T ss_pred HHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCC
Confidence 999999999999999999999999999999999999999999999996699999999999987742 3588999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c-----hhHH
Q 012138 325 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P-----VSAY 396 (470)
Q Consensus 325 ~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~-----~~~~ 396 (470)
++||++|+++.++|+.++++++.++++++++++++.|+++. ++| .+.++++.|+++++++..+.. + ....
T Consensus 323 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~~-~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~ 400 (466)
T PRK07030 323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLA-DHP-HVAEVRQTGMILAIEMVQDKASKTPYPWQERRGL 400 (466)
T ss_pred CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cCC-CEEEeEeceeEEEEEeccCccccccCcchhHHHH
Confidence 99999999999999999999999999999999999999985 565 789999999999999964321 0 1135
Q ss_pred HHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+.|+++||++.+. ++.+||.||+++|++||++++++|+++++ ++
T Consensus 401 ~i~~~~~~~Gvl~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~al~-~~ 447 (466)
T PRK07030 401 KVYQHALERGALLRPL-GSVVYFLPPYVITPEQIDFLAEVASEGID-IA 447 (466)
T ss_pred HHHHHHHHCCeEEEec-CCEEEEECCccCCHHHHHHHHHHHHHHHH-HH
Confidence 7888999999999876 47999999999999999999999999999 87
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=510.94 Aligned_cols=397 Identities=31% Similarity=0.525 Sum_probs=340.9
Q ss_pred hHHHHHHHhhhcccCCCC----CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC
Q 012138 39 SQQLINLEYEYSAHNYHP----VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF 114 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~----~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~ 114 (470)
+++.++...++.++.|.+ .|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+....+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~ 92 (451)
T PRK06062 13 GARAYALDRAHVFHSWSAQGKINPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPAH 92 (451)
T ss_pred hHHHHHhhhhhccccccccccCCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCcc
Confidence 455666666666665543 5899999999999999999999999999999999999999999999999987765556
Q ss_pred CCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 115 YNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.++...+++++|+++.+ .++|+|++||+||++.|+|+++.+ +++..||.+.++|||++.+++++++.+..
T Consensus 93 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~--------tgr~~ii~~~~~yHG~t~~als~~~~~~~ 164 (451)
T PRK06062 93 ANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLH--------TGRPKVLSAYRSYHGGTGSAINLTGDPRR 164 (451)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHh--------hCCceEEEEeCCCCCCCHHHHhhcCCccc
Confidence 78889999999999874 679999999999999999999986 36678999999999999999998875533
Q ss_pred ccCCCCCCCCeeee--------cC---CC-------HHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 193 IRGFGPLLPGHLKV--------DF---GD-------ITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 193 ~~~~~~~~~~~~~~--------~~---~d-------~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
+ ...+..+++..+ ++ +| +++|+++++.. ++++++||+||+++.+|.+.|+++|+++|+++
T Consensus 165 ~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~l 243 (451)
T PRK06062 165 W-PNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVREL 243 (451)
T ss_pred c-cCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence 2 223333333322 12 23 67888888654 25799999999999999999999999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC--CccCCCCCCHHHH
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLAS 331 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~ 331 (470)
|++||++||+||||+||||+|.+|+++++++.||+++|+|+++||++|+|++++++++++.+... .+++||++||++|
T Consensus 244 c~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~ 323 (451)
T PRK06062 244 CDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLAC 323 (451)
T ss_pred HHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999977999999999999988643 5788999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------c-----hhHHHHH
Q 012138 332 AVAIASLDVIRDEKLAERSAHLG-EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------P-----VSAYDIC 399 (470)
Q Consensus 332 aaa~a~l~~~~~~~~~~~~~~~~-~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~-----~~~~~~~ 399 (470)
+++.++|+.++++++.+++++++ .++++.|+++..++| .+..+++.|+|+.+++..+.. . .....+.
T Consensus 324 Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~-~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (451)
T PRK06062 324 AAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHP-SVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVK 402 (451)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC-cEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHH
Confidence 99999999999988999999999 699999999988886 788999999999999864210 0 1245788
Q ss_pred HHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 400 ~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+.|+++||++.+. .+.+||+||+.+|++||++++++|+++++ +++.
T Consensus 403 ~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~-~~~~ 448 (451)
T PRK06062 403 AACKERGLLPFVN-GNRIHVVPPCTVTEDEVREGLAILDAALA-VADA 448 (451)
T ss_pred HHHHHCCcEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHH-Hhhh
Confidence 9999999998764 57899999999999999999999999998 7654
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=511.36 Aligned_cols=409 Identities=30% Similarity=0.515 Sum_probs=351.4
Q ss_pred CCCCCCchHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHH
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQA 104 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 104 (470)
++.++-+++++.++++++.++.+. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql 85 (460)
T PRK06916 6 TDKPSYTYEELSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQL 85 (460)
T ss_pred CCCCCCChHHHHHHHhhccccccccccccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHH
Confidence 344445678888888777654322 3589999999999999999999999999999999999999999999999
Q ss_pred HHccccCC-CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcccccc
Q 012138 105 EKLTLSSR-AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181 (470)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~ 181 (470)
+++.+... .+.++...+++++|+++.+ .++++|+|||+||++.|+|+++.++.. +|. +++..||.+.++|||++.
T Consensus 86 ~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~-~g~-tgr~~ii~~~~~YHG~t~ 163 (460)
T PRK06916 86 NKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQN-KGK-PKKQRFVTLKNAYHGDTI 163 (460)
T ss_pred HhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-CCCcEEEEECCcCCcccH
Confidence 98765543 3567888999999999874 479999999999999999999986422 121 456799999999999999
Q ss_pred chhcccCCcccccCCCCCCCCeeeecCC-----------------CHHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCC
Q 012138 182 AAISMSCDNEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPP 243 (470)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~ 243 (470)
+++++++.+.++..|.+..+++..+|++ ++++++++++++++++++||+|| +++.+|.+.|+
T Consensus 164 ~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~ 243 (460)
T PRK06916 164 GAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMP 243 (460)
T ss_pred HhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCC
Confidence 9999998877777788776666555442 25677888876667899999999 69999999999
Q ss_pred hhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc------
Q 012138 244 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------ 317 (470)
Q Consensus 244 ~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~------ 317 (470)
++|+++|+++|++||++||+|||++||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+..
T Consensus 244 ~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~ 323 (460)
T PRK06916 244 KGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQK 323 (460)
T ss_pred HHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999996699999999999987642
Q ss_pred -CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c-
Q 012138 318 -GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P- 392 (470)
Q Consensus 318 -~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~- 392 (470)
..+++||++||++|+++.++|+.++++++.++++++++++++.|+++.. +| .+.++++.|+|+.+++..+.. .
T Consensus 324 ~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~~-~v~~vrG~Glm~giel~~~~~~~~~~ 401 (460)
T PRK06916 324 TFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-LK-HVGDIRQLGLMVGIELVKNKETKEPF 401 (460)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CC-CeEEeecCCceeeEEeecccccccCC
Confidence 3478899999999999999999999989999999999999999999865 65 788999999999999864321 0
Q ss_pred ----hhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 393 ----VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 393 ----~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.....++..|+++||++.+. ++.+||.||+++|++||++++++|+++++ ++.
T Consensus 402 ~~~~~~~~~i~~~~~~~Gvl~~~~-g~~l~~~Ppl~it~~~id~~~~~l~~~l~-~~~ 457 (460)
T PRK06916 402 EWTERVGVQVCKRSRELGMLTRPL-GNTIVFMPPLASTIDELDEMLRILYKAIS-DVT 457 (460)
T ss_pred CchhhHHHHHHHHHHHCCeEEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHH-hhc
Confidence 01357889999999999876 47999999999999999999999999998 653
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-65 Score=510.29 Aligned_cols=391 Identities=30% Similarity=0.488 Sum_probs=337.6
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhh
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~ 130 (470)
..+.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+... .+.++...+++++|++..
T Consensus 7 ~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~ 86 (443)
T PRK07483 7 RSPRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAA 86 (443)
T ss_pred ccccCCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC
Confidence 3445579999999999999999999999999999999999999999999999998764333 356788899999999987
Q ss_pred C--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec-
Q 012138 131 G--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD- 207 (470)
Q Consensus 131 ~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 207 (470)
+ .++++|++||+||++.|+|+++.|+.. ++ .+++.+||.+.++|||++.+++++++.+.++..|.+..+++..++
T Consensus 87 p~~~~~v~f~~sGsEAve~AlklAr~~~~~-~g-~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~ 164 (443)
T PRK07483 87 PAGLEHVYFVSGGSEAVEAALKLARQYFVE-IG-QPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSP 164 (443)
T ss_pred CCCCCEEEEcCCcHHHHHHHHHHHHHHHHh-cC-CCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCC
Confidence 3 689999999999999999999986422 22 135678999999999999999999987777777777776655554
Q ss_pred ---CCC--------------HHHHHHHHHh-cCCCeEEEEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 208 ---FGD--------------ITALEKIFKE-SGDQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 208 ---~~d--------------~~~Le~~l~~-~~~~~~~vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
|++ ++++++++.. .++++++||+||+++ .+|.+.|+++|+++|+++|++||++||+||||+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 244 (443)
T PRK07483 165 CYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC 244 (443)
T ss_pred CccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee
Confidence 333 2577776653 335899999999998 579999999999999999999999999999999
Q ss_pred CCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 269 GLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 269 g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+... .|++||++||++|+++.++|+.++++
T Consensus 245 GfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~ 324 (443)
T PRK07483 245 GMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAED 324 (443)
T ss_pred CcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999966999999999999888543 48899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------chhHHHHHHHHHHcCceeccCC---
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PVSAYDICLKMKERGILAKPTH--- 413 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~~~--- 413 (470)
++.+++++++++|++.|+++..++| .+.++++.|+|+++++..+.. ......+++.|+++||++.+.+
T Consensus 325 ~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~ 403 (443)
T PRK07483 325 GLLANVRARGEQLRARLRERLGQHP-HVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTI 403 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC-CeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccc
Confidence 9999999999999999999887786 789999999999999854310 0124578899999999997642
Q ss_pred ----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 414 ----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 ----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++.+||.||+++|++||++++++|+++|. ++.
T Consensus 404 ~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~-~~~ 439 (443)
T PRK07483 404 DGVRGDHVLLAPPFIITAAQIDEIVERLGDAID-AAL 439 (443)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 47999999999999999999999999998 653
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=511.08 Aligned_cols=398 Identities=31% Similarity=0.511 Sum_probs=339.9
Q ss_pred HHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CC
Q 012138 44 NLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AF 114 (470)
Q Consensus 44 ~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~ 114 (470)
+..+++.|+.+. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+... .+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~ 83 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGT 83 (449)
T ss_pred ccccccccCCcccccccccCCCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceeccccc
Confidence 344566666542 258999999999999999999999999999999999999999999999998776532 35
Q ss_pred CCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 115 YNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
.++...+++++|++.. +.++++|++||+||++.|+|+++.|+.. +| .+++.+||.+.++|||++.+++++++.+.
T Consensus 84 ~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~-~g-~~~r~~ii~~~~~yHG~t~ga~s~~~~~~ 161 (449)
T PRK07481 84 THPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKV-RG-QPERTKFISLKQGYHGTHFGGASVNGNTV 161 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHh-cC-CCCCcEEEEECCCcCCcchhhhccCCCcc
Confidence 6788899999999987 3578999999999999999999986422 12 13567899999999999999999988776
Q ss_pred cccCCCCCCCCeeeec--------CC--CHHHH--------HHHHH-hcCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 192 AIRGFGPLLPGHLKVD--------FG--DITAL--------EKIFK-ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~--------~~--d~~~L--------e~~l~-~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
++..|.+..+++..++ ++ |++++ |+++. .+++++++||+||+++.+|.+.|+++|+++|++
T Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~ 241 (449)
T PRK07481 162 FRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVRE 241 (449)
T ss_pred cccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHH
Confidence 7767777766655443 44 54443 44444 234689999999999999999999999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCCCC
Q 012138 253 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTFG 325 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t~~ 325 (470)
+|++||++||+|||++||||+|++|+++++++.||++++||+++||++|+|++++++++++.+.. ..+++||+
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~ 321 (449)
T PRK07481 242 VCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYS 321 (449)
T ss_pred HHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999996699999999999998853 25889999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------chhHHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PVSAYD 397 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~ 397 (470)
+||++|+++.++|+.++++++.+++++++++|++.|+++..++| .+..+++.|+|+++++..+.. ......
T Consensus 322 gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~ 400 (449)
T PRK07481 322 GHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFE-LVGDVRGKGLMLALDLVADKATREPIDPSKGYANA 400 (449)
T ss_pred CCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEeecceEEEEEecccccccCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999988775 889999999999999854210 013467
Q ss_pred HHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 398 ~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+.+.|+++||++.+.+ +.+||+||+++|++||++++++|+++++ ++.
T Consensus 401 ~~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~-~~~ 447 (449)
T PRK07481 401 VADVARENGVLVRPSG-TKIILSPPLVIQREDVDRIVDALDAGLS-AVP 447 (449)
T ss_pred HHHHHHhCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-hcc
Confidence 8889999999998764 5699999999999999999999999998 653
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=508.93 Aligned_cols=402 Identities=28% Similarity=0.447 Sum_probs=344.8
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
.+++++.+.++.++.+. ..|+++++++|+++||.|||+||||.+++++.++||+||+|.+++.+|++++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~ 84 (460)
T PRK06105 5 PNSLEARDIAYHLHPYTNARRHEEEGPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYH 84 (460)
T ss_pred hHHHHHhhhhhcccCCcccccccccCCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCee
Confidence 34567777777665543 24899999999999999999999999999999999999999999999999876532
Q ss_pred C--CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R--AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~--~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. .+.++...+++++|++..+ .++++|++||+||+++|+|+++.++. .++. +++.+||.+.++|||++.++++++
T Consensus 85 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~-~~g~-t~r~~il~~~~~yHG~t~~a~s~t 162 (460)
T PRK06105 85 TFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNN-ALGR-PEKKKIISRQRGYHGVTIASASLT 162 (460)
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHH-hcCC-CCCcEEEEecCccCCcchhheecc
Confidence 2 3567788999999999874 57999999999999999999987532 1221 356799999999999999999998
Q ss_pred CCcccccCCCCCCCCeeeecCCC------------------HHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d------------------~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
+.+..+..|.+..+++..+++++ .+++|+++... ++++++||+||+++.+|.+.|+++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~ 242 (460)
T PRK06105 163 GLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWE 242 (460)
T ss_pred CCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHH
Confidence 87666777777766666665542 36788888543 358999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCcc
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHG 321 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~ 321 (470)
+|+++|++||+++|+||||+||||+|++|+++++++.||++++||+++||++|+|++++++++++.+.. ..|+
T Consensus 243 ~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~ 322 (460)
T PRK06105 243 KIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHG 322 (460)
T ss_pred HHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccC
Confidence 999999999999999999999999999999999999999999999999996699999999999988753 1378
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------ch
Q 012138 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PV 393 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~ 393 (470)
+||++||++|+++.++|+.++++++.+++++++++|++.|+++ .++| .+.++++.|+++++++..+.. ..
T Consensus 323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~~-~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~ 400 (460)
T PRK06105 323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADHP-LVGEVRGVGLIAAVELVADKATKTPFEPPGK 400 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcCC-CeEEEEecceEEEEEEecCcccCCCCCchhH
Confidence 8999999999999999999999999999999999999999999 6775 889999999999999864321 01
Q ss_pred hHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+..+...|+++||++.+. .+.+||+||+++|++||++++++|.++++ ++.
T Consensus 401 ~a~~i~~~~~~~Gvl~~~~-g~~i~l~Ppl~it~~eid~~~~~l~~~l~-~~~ 451 (460)
T PRK06105 401 VGARANAAAHEHGVISRAM-GDTLAFCPPLIITAAQVDEMVDRFGRALD-DVA 451 (460)
T ss_pred HHHHHHHHHHHCCeEEEec-CCEEEEECCCccCHHHHHHHHHHHHHHHH-HHH
Confidence 2457888999999999876 47999999999999999999999999998 764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=502.34 Aligned_cols=387 Identities=34% Similarity=0.577 Sum_probs=345.8
Q ss_pred cccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhh
Q 012138 50 SAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSM 129 (470)
Q Consensus 50 ~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (470)
..+.+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+....+.++...+++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~ 89 (397)
T TIGR03246 10 MVPNYAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDA 89 (397)
T ss_pred hhcccCCCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhh
Confidence 33445678999999999999999999999999999999999999999999999999865444445677889999999999
Q ss_pred hCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 130 FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 130 ~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
.+.++++|++||++|++.|+++++.|+..+.+ +++..||+++.+|||++..++++++.+.++..|.+..+++..++||
T Consensus 90 ~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~--~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (397)
T TIGR03246 90 TFADKVFFCNSGAEANEAALKLARRYALDKHG--ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN 167 (397)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC--CCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC
Confidence 88889999999999999999999986432211 3567899999999999999999888777777788887888899999
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV 289 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~ 289 (470)
|++++++++.+ ++++|++||+++++|.+.|+++|+++|+++|++||+++|+||+|+||||+|.+++++++++.||++
T Consensus 168 d~~~l~~~l~~---~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~ 244 (397)
T TIGR03246 168 DLAAAKALISD---KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL 244 (397)
T ss_pred CHHHHHHHhcc---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEE
Confidence 99999999975 799999999999999998899999999999999999999999999999999998888999999999
Q ss_pred eccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 290 s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
++||+++||+ |+|++++++++++.+....+++||+++|++++++.++|+.++++++.++++++++++++.|+++..+++
T Consensus 245 t~~K~lggG~-pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~~ 323 (397)
T TIGR03246 245 TSAKALGGGF-PIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKINARYN 323 (397)
T ss_pred EeehhhhCCc-ceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999997 999999999999999877788899999999999999999988888999999999999999999887665
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+..+++.|.++.+++.... ......+++.|+++|+++.+.+.+++||+||+.+|+++|++++++|.+++. ++
T Consensus 324 -~~~~vrg~G~~~~i~~~~~~-~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~-~~ 396 (397)
T TIGR03246 324 -VFSEIRGKGLLIGAVLTEAY-QGKAKQFVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEGLARFERAIE-QV 396 (397)
T ss_pred -CeEeeecCceEEEEEEcCch-hhHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 67889999999999885421 125678999999999999877678999999999999999999999999987 53
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=504.73 Aligned_cols=399 Identities=31% Similarity=0.540 Sum_probs=343.5
Q ss_pred CCchHHHHHHHhhhcccCC--CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC
Q 012138 36 SSSSQQLINLEYEYSAHNY--HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~ 113 (470)
.+++.+++++.+++....+ .+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+....
T Consensus 12 ~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~ 91 (457)
T PRK05639 12 GPKAKELIEREKRVLSPGIGVKLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIG 91 (457)
T ss_pred CCCHHHHHHHHHHhhccccCcCCCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccC
Confidence 4557778877777766554 34699999999999999999999999999999999999999999999999987654432
Q ss_pred -CCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-
Q 012138 114 -FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD- 189 (470)
Q Consensus 114 -~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~- 189 (470)
+.++...+++++|++..+ .++++|++||+||++.|+|+++.+ +++..||.+.++|||++.+++++++.
T Consensus 92 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~a~s~~~~~ 163 (457)
T PRK05639 92 YTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFS--------TRRPWILAFIGAYHGQTLGATSVAAFQ 163 (457)
T ss_pred ccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHh--------cCCCeEEEECCCcCCccHHHHHHcCCC
Confidence 345677899999999875 479999999999999999999986 36678999999999999999988764
Q ss_pred cccccCCCCCCCCeeeecCCC-------------H--------HHHHHHHHh---cCCCeEEEEEccccCCCccccCChh
Q 012138 190 NEAIRGFGPLLPGHLKVDFGD-------------I--------TALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d-------------~--------~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
..++..|.+..+++..+|+++ . +.|++.+.. .++++++||+||+++.+|.+.|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~ 243 (457)
T PRK05639 164 SSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPEN 243 (457)
T ss_pred cccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHH
Confidence 345566777777777777753 2 235555432 2468999999999999999999999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCC
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG 325 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~ 325 (470)
|+++|+++|++||++||+||||+||||+|.+|+++++++.||+++|||+++||+ |+|++++++++++. ....+.+||+
T Consensus 244 yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~-pi~av~~~~~i~~~-~~~~~~~T~~ 321 (457)
T PRK05639 244 FFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGM-GLSGVIGRKELMDL-TSGSALLTPA 321 (457)
T ss_pred HHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCCC-cceeEEehHHHHhh-cCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999997 99999999999984 3445678999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---chhHHHHHHHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKM 402 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l 402 (470)
+||++|+++.++|+.++++++.+++++++++|++.|+++..++| .+.++++.|+|+.+++..+.. ......+.+.|
T Consensus 322 g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~ 400 (457)
T PRK05639 322 ANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFE-VIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRA 400 (457)
T ss_pred cCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCC-CEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988885 889999999999999854321 12356788999
Q ss_pred HHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 403 KERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 403 ~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+++|+++.+.+ .+.+||.||+.+|++|+++++++|+++++ ++.
T Consensus 401 ~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~-~~~ 445 (457)
T PRK05639 401 FELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIK-DAL 445 (457)
T ss_pred HhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-HHH
Confidence 99999997654 58999999999999999999999999998 764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=501.61 Aligned_cols=401 Identities=30% Similarity=0.543 Sum_probs=348.1
Q ss_pred chHHHHHHHhhhcccCC--CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CC
Q 012138 38 SSQQLINLEYEYSAHNY--HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AF 114 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~--~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~ 114 (470)
+++++++.+++|..+.+ ...|+++++++|+++||.|||+||||.+++++.++||+||+|.+++.+|++++.+... .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~ 82 (445)
T PRK08593 3 KAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYM 82 (445)
T ss_pred hHHHHHHHHHHhhccccccCCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCcccccc
Confidence 45677888877766654 3468999999999999999999999999999999999999999999999998776543 35
Q ss_pred CCCcHHHHHHHHhhhhC-C--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-
Q 012138 115 YNDKFPVFAERLTSMFG-Y--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN- 190 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~-~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~- 190 (470)
.++...+++++|++..+ . ++|+|++||+||++.|+|+++.+ .|+.+||.++++|||++.+++++++..
T Consensus 83 ~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~--------tgr~~ii~~~~~YHG~t~~als~s~~~~ 154 (445)
T PRK08593 83 YHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAY--------TGRPYIISFTNAYHGSTYGSLSMSGISL 154 (445)
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh--------hCCCeEEEECCCcCCCcHHHHhhcCCCc
Confidence 67888999999999874 2 68999999999999999999986 367789999999999999999888743
Q ss_pred ccccCCCCCCCCeeeecCCCH-----------------HHHHHHHHhc--CCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 191 EAIRGFGPLLPGHLKVDFGDI-----------------TALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~-----------------~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
.++..|.+..+++..+|++|. +++++++.+. .+++++||+||+++.+|.+.|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~ 234 (445)
T PRK08593 155 NMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALY 234 (445)
T ss_pred ccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHH
Confidence 345667777777776766532 4455555432 358999999999999999988999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHH
Q 012138 252 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLAS 331 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~ 331 (470)
++|++||++||+||||+||||+|.+|+++++++.||++++||+++||+ |+|++++++++++.+....+.+|+++||++|
T Consensus 235 ~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~-p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~ 313 (445)
T PRK08593 235 KFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGM-PMSAIVGRKEIMESLEAPAHLFTTGANPVSC 313 (445)
T ss_pred HHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCc-ccEEEEEcHHHHhhhccCCCCCCCCCCHHHH
Confidence 999999999999999999999999988999999999999999999997 9999999999999987667788999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcC
Q 012138 332 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERG 406 (470)
Q Consensus 332 aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~G 406 (470)
+++.++|+.++++++.+++++++++|++.|+++..++| .+.++++.|+++.+++..+.. ......++..|+++|
T Consensus 314 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~G 392 (445)
T PRK08593 314 AAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYN-FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHG 392 (445)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCC
Confidence 99999999999989999999999999999999988886 899999999999998864210 123567889999999
Q ss_pred ceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 407 ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 407 v~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
|++.+...+.+||+||+.+|++||++++++|+++++ ++....
T Consensus 393 v~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~-~~~~~~ 434 (445)
T PRK08593 393 VVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFT-ALEAGK 434 (445)
T ss_pred eEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHH-HHhccc
Confidence 999776678999999999999999999999999999 875533
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=503.04 Aligned_cols=399 Identities=30% Similarity=0.529 Sum_probs=339.5
Q ss_pred CCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-C
Q 012138 36 SSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-A 113 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~ 113 (470)
.+++.++.+...++....+. +.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+... .
T Consensus 16 ~~~s~~~~~~~~~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~ 95 (443)
T PRK06058 16 GPKSQALAERRAAAVAAGVGSTLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMV 95 (443)
T ss_pred CccHHHHHHHHHHhhccccccCCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccc
Confidence 35677788776677666653 568999999999999999999999999999999999999999999999998764433 2
Q ss_pred CCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-
Q 012138 114 FYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD- 189 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~- 189 (470)
+.++...+++++|++.++ .++++|++||+||++.|+++++.+ .|+..||++.++|||++.+++++++.
T Consensus 96 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~al~~~~~~ 167 (443)
T PRK06058 96 TPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSY--------TGRQAVVVFDHAYHGRTNLTMALTAKS 167 (443)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh--------hCCCeEEEECCCcCcChHHHHhhcCCC
Confidence 456778899999999874 268999999999999999999986 25668999999999999999988764
Q ss_pred cccccCCCCCCCCeeeec----CCCH--------HHHHHHH---Hh--cCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 190 NEAIRGFGPLLPGHLKVD----FGDI--------TALEKIF---KE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~----~~d~--------~~Le~~l---~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
..++..|.+..+++..+| ++++ +.+++.+ ++ .++++++||+||+++.+|.+.|+++|+++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~ 247 (443)
T PRK06058 168 MPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLE 247 (443)
T ss_pred cccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence 235556666656544433 3331 2222222 11 13589999999999999999999999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHH
Q 012138 253 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~a 332 (470)
+|++||+++|+||||+||||+|.+|+++++++.||+++++|+++||+ |+|++++++++++.+....+++||++||++|+
T Consensus 248 lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G~-Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~a 326 (443)
T PRK06058 248 WCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGGL-PLSAVTGRAEIMDAPHPGGLGGTYGGNPVACA 326 (443)
T ss_pred HHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCCC-ccEEEEEcHHHHhhccCCCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999997 99999999999999987788999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----chhHHHHHHHHHHcCce
Q 012138 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLKMKERGIL 408 (470)
Q Consensus 333 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~Gv~ 408 (470)
++.++|+.++++++.+++++++++++++|+++..++| .+.++++.|+|+++++..+.. ......+.+.|+++||+
T Consensus 327 aa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~ 405 (443)
T PRK06058 327 AALAAIETIEEDDLVARARQIEALMTDRLRALAAEDD-RIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVI 405 (443)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCC-cEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeE
Confidence 9999999999899999999999999999999988775 888999999999999854311 12356788889999999
Q ss_pred eccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 409 AKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 409 ~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+++ ++++||.||+++|+++|++++++|+++++ ++
T Consensus 406 ~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~-~~ 443 (443)
T PRK06058 406 VLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALA-DL 443 (443)
T ss_pred EeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH-hC
Confidence 98754 58999999999999999999999999997 53
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-64 Score=503.98 Aligned_cols=402 Identities=29% Similarity=0.458 Sum_probs=337.5
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
+.++++.+.++.++.+. ..|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~ 86 (456)
T PRK07480 7 TAELQALDAAHHLHPFSDMKALNEKGSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYN 86 (456)
T ss_pred HHHHHhhhhcccccCcccccccccCCCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc
Confidence 35566655566544432 24789999999999999999999999999999999999999999999999876543
Q ss_pred C--CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R--AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~--~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. .+.++...+++++|++..+ .++++|++||+||++.|+|+++.|+... | .+++.+||.+.++|||++.++++++
T Consensus 87 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~-g-~~~r~~ii~~~~~yHG~tl~a~s~~ 164 (456)
T PRK07480 87 TFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALK-G-KPQKKVIISRKNGYHGSTVAGASLG 164 (456)
T ss_pred cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhc-C-CCCCcEEEEECCCcCCcchhhhhcc
Confidence 3 3567888999999999884 5799999999999999999999863221 1 1356789999999999999999998
Q ss_pred CCcccccCCCCCCCCeeeecCC---------------C--HHHHHHHHHh-cCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFG---------------D--ITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~---------------d--~~~Le~~l~~-~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+.+.++..+.+..+++..++++ + +++|++.+.+ .++++++||+||+++.+|.+.|+++|+++
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~ 244 (456)
T PRK07480 165 GMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPE 244 (456)
T ss_pred CChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHH
Confidence 7655555555545554444432 1 3667655543 34689999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC--c--CCccCCCC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ--P--GEHGSTFG 325 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~--~--~~~~~t~~ 325 (470)
|+++|++||++||+||||+||||+|++|+++++++.||+++|||+++||++|+|++++++++++.+. . ..+++||+
T Consensus 245 lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~ 324 (456)
T PRK07480 245 IQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYS 324 (456)
T ss_pred HHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCC
Confidence 9999999999999999999999999999999999999999999999999779999999999999872 2 35889999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c-----hhHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERS-AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P-----VSAY 396 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~-~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~-----~~~~ 396 (470)
+||++|+++.++|+.++++++.+++ ++++++|++.|+++ .++| .+.++++.|+|+++++..+.. . ....
T Consensus 325 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~~-~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~ 402 (456)
T PRK07480 325 GHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADHP-LVGEVRGVGLVGAIELVKDKATRERFEAGGGVGT 402 (456)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcCC-CeeeEEeecceEEEEEeccccccccCcchhhHHH
Confidence 9999999999999999998999999 69999999999997 4565 789999999999999964321 0 0135
Q ss_pred HHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+.+.|+++||++.+. .+.+||+||+++|++||++++++|++++. ++.
T Consensus 403 ~~~~~~~~~Gll~~~~-~~~l~~~Ppl~it~~eid~~~~~l~~al~-~~~ 450 (456)
T PRK07480 403 ICRDHCFANGLIMRAV-GDRMIISPPLVITHAEIDELVEKARKALD-ATA 450 (456)
T ss_pred HHHHHHHHCCcEEeec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 6778899999999875 47899999999999999999999999998 763
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=503.25 Aligned_cols=396 Identities=31% Similarity=0.523 Sum_probs=337.0
Q ss_pred chHHHHHHHhhh--cccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-ccCCC
Q 012138 38 SSQQLINLEYEY--SAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRA 113 (470)
Q Consensus 38 ~~~~~~~~~~~~--~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~ 113 (470)
+++++++.+.+| ..+.|. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+++.. +.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~ 97 (459)
T PRK06931 18 TNETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLD 97 (459)
T ss_pred chHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccc
Confidence 345677776654 333343 57999999999999999999999999999999999999999999999998633 22333
Q ss_pred CCCCcHHHHHHHHhhhhCC-----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 114 FYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
+.++...+++++|.+..+. ..++++|||+||++.|+|+++.+ .++.+||.+.++|||++.+++++++
T Consensus 98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~--------tgr~~Ii~~~~~yHG~t~~als~t~ 169 (459)
T PRK06931 98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY--------TGRSNVISFSGGYHGMTHGALAVTG 169 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHh--------cCCCeEEEECCCcCCccHHHHhhcC
Confidence 5677889999999988742 23567799999999999999986 3677999999999999999999988
Q ss_pred CcccccCCCCCCCCeeeecCCC-------------HHHH----HHHHHh---cCCCeEEEEEccccCCCccccCChhhHH
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGD-------------ITAL----EKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d-------------~~~L----e~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
.+.++..|.+..+++..+|+++ .+.+ ++.+.+ ..+++++||+||+++.+|.+.|+++|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~ 249 (459)
T PRK06931 170 NLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQ 249 (459)
T ss_pred CcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHH
Confidence 7777777777777776666553 2333 333332 2246999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCH
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 328 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~ 328 (470)
+|+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||+ |+|++++++++ +.+.+..+++||++||
T Consensus 250 ~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~-Pi~av~~~~~~-~~~~~~~~~~T~~gnp 327 (459)
T PRK06931 250 KIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGL-PLAVLGIKKEF-DAWQPGGHTGTFRGNQ 327 (459)
T ss_pred HHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCc-ceeeeeeHHHH-hhccCCCCCCCCCCCH
Confidence 999999999999999999999999999999999999999999999999997 99999988774 7776677999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----------chhHHH
Q 012138 329 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSAYD 397 (470)
Q Consensus 329 ~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~ 397 (470)
++|+++.++|+.++++++.+++++++++|++.|+++..++| .+.++++.|+|+++++..+.. ......
T Consensus 328 la~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~ 406 (459)
T PRK06931 328 LAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYP-CIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAA 406 (459)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEeEecCceEEEEEEccCcccccccccCCccHHHHHH
Confidence 99999999999999999999999999999999999988886 889999999999999954310 012456
Q ss_pred HHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 398 ICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 398 ~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+.|+++||++.+.+ ++++||.||+++|++||++++++|++++. ++
T Consensus 407 ~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~-~~ 455 (459)
T PRK06931 407 IQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALL-AA 455 (459)
T ss_pred HHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHH-HH
Confidence 8888999999997653 68999999999999999999999999998 64
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=496.12 Aligned_cols=389 Identities=37% Similarity=0.600 Sum_probs=347.0
Q ss_pred cccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhh
Q 012138 50 SAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSM 129 (470)
Q Consensus 50 ~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 129 (470)
....+.+.|+++.+++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+....+.++...+++++|.+.
T Consensus 15 ~~~~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~ 94 (408)
T PRK04612 15 YLPVYRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTA 94 (408)
T ss_pred hhcccCCCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhh
Confidence 33445678999999999999999999999999999999999999999999999999876655445677889999999987
Q ss_pred hC-CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC
Q 012138 130 FG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF 208 (470)
Q Consensus 130 ~~-~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (470)
.+ .++++|++||+||++.|+|+++.|+.. +|.++++.+|+.+.++|||++.+++++++.+.++..|.++.+++..+++
T Consensus 95 ~~~~~~v~f~~sGseA~e~AlklAr~~~~~-~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 173 (408)
T PRK04612 95 SRFAEKVFLCNSGTEANEAAIKLVRKWASS-QGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF 173 (408)
T ss_pred CCCCCEEEEcCchHHHHHHHHHHHHHHHHh-hCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC
Confidence 74 479999999999999999999986432 3333456689999999999999999999887777788877777788899
Q ss_pred CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcce
Q 012138 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 288 (470)
Q Consensus 209 ~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi 288 (470)
+|++.+++++.. +++++|++||+++.+|.+.|+++|+++|+++|++||+++|+||||+|||++|.+++..++++.||+
T Consensus 174 ~d~~~l~~~~~~--~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi 251 (408)
T PRK04612 174 NDVEALEAAMAG--GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDI 251 (408)
T ss_pred CCHHHHHHhhCC--CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCE
Confidence 999999999863 479999999999988998888899999999999999999999999999999998887778999999
Q ss_pred eeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 289 ~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
++|||++++|+ |+|++++++++++.+....+++||+++|++++++.++|+.++++++.+++++++++++++|+++..++
T Consensus 252 ~t~~K~l~~G~-piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~ 330 (408)
T PRK04612 252 VTLAKALGGGF-PIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEF 330 (408)
T ss_pred EEEcchhcCCC-ceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999997 99999999999998877778899999999999999999999989999999999999999999998888
Q ss_pred CCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 369 PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 369 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ .+.++++.|+|+.+++.... ...+..+++.|+++||++.+.+.+.+||.||+.+|++||++++++|++++. ++
T Consensus 331 ~-~i~~vrg~Gl~~~i~~~~~~-~~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~-~~ 404 (408)
T PRK04612 331 G-VFAQVRGRGLMLGAVLAPAH-AGQAGAILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARLRLALA-DY 404 (408)
T ss_pred C-CeeeeeccceEEEEEecCch-hhHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccCCHHHHHHHHHHHHHHHH-HH
Confidence 5 88999999999999986321 124678899999999999887779999999999999999999999999998 64
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=502.88 Aligned_cols=402 Identities=26% Similarity=0.434 Sum_probs=337.3
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
.+++.+.+.++.++.+. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~ 90 (460)
T PRK12403 11 TRDYQAADAAHHIHAFLDQKALNAEGPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN 90 (460)
T ss_pred hHHHHHhhhcccccccccccccccCCCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee
Confidence 46666666666655443 34899999999999999999999999999999999999999999999999977654
Q ss_pred C--CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R--AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~--~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. .+.++...+++++|+++++ .++++|++||+||+++|+++++.|+.. +|. +++.+|+.+..+|||++.++++++
T Consensus 91 ~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~-~g~-~~r~~ii~~~~~yHG~t~~~~s~s 168 (460)
T PRK12403 91 MFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQV-LGK-PQKKIMIGRWNGYHGSTLAATALG 168 (460)
T ss_pred cccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHh-hCC-CCCcEEEEECCCcCcccHhhhhcC
Confidence 3 2356778999999999886 689999999999999999999986321 111 345678889999999999999998
Q ss_pred CCcccccCCCCCCCCeeeecCCC-----------------HHHHHHHHHh-cCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~-~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+...++. +.+..+++..+|+++ +++|++.+.+ ..+++++||+||+++.+|.+.|+++|+++
T Consensus 169 ~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~ 247 (460)
T PRK12403 169 GMKFMHE-MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPE 247 (460)
T ss_pred CCccccc-cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHH
Confidence 8654433 455555555554321 3567666643 33589999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc----CCccCCCC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP----GEHGSTFG 325 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~----~~~~~t~~ 325 (470)
|+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+.. ..+++||+
T Consensus 248 lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~ 327 (460)
T PRK12403 248 IQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYS 327 (460)
T ss_pred HHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999996699999999999988743 24788999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c-----hhHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P-----VSAY 396 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~-----~~~~ 396 (470)
+||++|+++.++|+.++++++.++++ ++++++++.|+++..++| .+.++++.|+|+++++..+.. . ....
T Consensus 328 gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~ 406 (460)
T PRK12403 328 GHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHP-LVGEVQGAGLVAALQFAEDKATRKRFANENDLAW 406 (460)
T ss_pred CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCC-CEEeEeecceEEEEEEccCccccccccchhHHHH
Confidence 99999999999999999888999996 999999999999888886 899999999999999964321 0 1133
Q ss_pred HHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+.+.|+++||++.+. .+.+||+||+++|++|+++++++|++++. ++.
T Consensus 407 ~~~~~~~~~Gll~~~~-~~~~~l~Ppl~it~~eid~~~~~l~~al~-~~~ 454 (460)
T PRK12403 407 RCRTIGFEEGVIIRST-LGRMIMAPALVAGRAEIDELVDKTRIAVD-RTA 454 (460)
T ss_pred HHHHHHHhCCEEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 4567778999999765 35789999999999999999999999998 763
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-64 Score=508.19 Aligned_cols=385 Identities=28% Similarity=0.452 Sum_probs=329.5
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhh-C-
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMF-G- 131 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~-~- 131 (470)
+.|+++++++|+|+||.|||+||||.+++++.++||+||+|++++.++++++.+... .+.++...+++++|.+.+ +
T Consensus 70 ~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~ 149 (504)
T PLN02760 70 LEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTAR 149 (504)
T ss_pred CCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCC
Confidence 368999999999999999999999999999999999999999999999998765432 346788899999999885 2
Q ss_pred -CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCC
Q 012138 132 -YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 210 (470)
Q Consensus 132 -~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 210 (470)
.++++|++||+||++.|+++++.|+. .+|. +++.+||.++++|||++.+++++++.+.++..|.+..+.+..+++++
T Consensus 150 ~~~~v~f~~SGsEA~e~AlKlAr~~~~-~~g~-~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~ 227 (504)
T PLN02760 150 KMGKVFFTNSGSEANDTQVKLVWYYNN-ALGR-PNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH 227 (504)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHHHH-hcCC-CCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCc
Confidence 46899999999999999999987531 1121 34678999999999999999998887666556655444443333211
Q ss_pred ------------------HHHHHHHHHh-cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 211 ------------------ITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 211 ------------------~~~Le~~l~~-~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.++|++++.. .++++++||+||+++.+|.+.|+++|+++|+++|++||++||+||||+|||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfG 307 (504)
T PLN02760 228 YWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFG 307 (504)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCc
Confidence 2457877753 335799999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
|+|++|+++++++.||+++|+|+++||++|+|++++++++++.+.. ..+++||++||++|+++.++|+.++++
T Consensus 308 RtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~ 387 (504)
T PLN02760 308 RLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER 387 (504)
T ss_pred ccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999997799999999999998753 258899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc--------hhHHHHHHHHHHcCceeccCCCCE
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP--------VSAYDICLKMKERGILAKPTHDTI 416 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~l~~~Gv~~~~~~~~~ 416 (470)
++.+++++++++|++.|+++ .++| .+.++++.|+|+++++..+... .....+++.|+++||++.+.+ +.
T Consensus 388 ~l~~~~~~~g~~l~~~L~~l-~~~~-~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~ 464 (504)
T PLN02760 388 NIPEHVNKIAPRFQDGIKAF-SGSP-IIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-DN 464 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHH-hcCC-CeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-CE
Confidence 99999999999999999998 5565 8889999999999999653210 125568889999999998754 68
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 417 VRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 417 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+||+||+++|++||++++++|+++++ ++.
T Consensus 465 lrl~Ppl~it~eeid~~~~~l~~al~-~~~ 493 (504)
T PLN02760 465 IMMSPPLIITPEEVDELISIYGKALK-ATE 493 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999998 763
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=495.88 Aligned_cols=396 Identities=34% Similarity=0.609 Sum_probs=343.7
Q ss_pred HHHHHHHhhhcccCCCCC-ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCC
Q 012138 40 QQLINLEYEYSAHNYHPV-PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYND 117 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~ 117 (470)
+++.+....+....+.+. |+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+... .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~ 83 (425)
T PRK07495 4 TSLTDRRNAAISRGVGMTTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYE 83 (425)
T ss_pred HHHHHHHHhhhccccCcCCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCH
Confidence 445555444445555444 8999999999999999999999999999999999999999999999998765432 45677
Q ss_pred cHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-cccc
Q 012138 118 KFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 193 (470)
Q Consensus 118 ~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~ 193 (470)
...+++++|++..+ .++++|++||+||++.|+|+++.+ +|+..|+.+.++|||++.+++++++. ..++
T Consensus 84 ~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 155 (425)
T PRK07495 84 NYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAA--------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYK 155 (425)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh--------hCCCeEEEECCCcCCccHHHhhhcCCCcccc
Confidence 78999999999874 268999999999999999999986 35678999999999999999888775 3466
Q ss_pred cCCCCCCCCeeeecCCC----------HHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 194 RGFGPLLPGHLKVDFGD----------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d----------~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
..|.+..+++..+|+++ ++++++++++ .++++++||+||+++.+|.+.++++|+++|+++|++||+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~ll 235 (425)
T PRK07495 156 VGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILL 235 (425)
T ss_pred cCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 77788777878888764 5566877763 23579999999999999988889999999999999999999
Q ss_pred EEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH
Q 012138 262 IADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 341 (470)
Q Consensus 262 I~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~ 341 (470)
|+||||+|||++|.+|+++++++.||+++|||+++||+ |+|++++++++++.+....+++||++||++++++.++++++
T Consensus 236 I~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G~-pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l 314 (425)
T PRK07495 236 IADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGGF-PLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVI 314 (425)
T ss_pred EEechhhcCCcCCCceeecccCCCCCEEeehhhhcCCc-cceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999997 99999999999999887788899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----chhHHHHHHHHHHcCceeccCC--CC
Q 012138 342 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLKMKERGILAKPTH--DT 415 (470)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~Gv~~~~~~--~~ 415 (470)
+++++.+++++++++++++|+++..++| .+..+++.|+|+++++..+.. ......+.+.|+++|+++.+.+ ++
T Consensus 315 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~ 393 (425)
T PRK07495 315 EEEDLCERANQLGNRLKQRLASLRETVP-EIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGN 393 (425)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhhCC-CeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCC
Confidence 9889999999999999999999988886 788999999999999964321 1124578889999999987643 58
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+||.||+++|++|+++++++|+++++ +++
T Consensus 394 ~~r~~Ppl~it~~~id~~~~~l~~~l~-~~~ 423 (425)
T PRK07495 394 VIRFLAPITIQDDVFAEALDILEASIL-EAS 423 (425)
T ss_pred EEEEeCCCccCHHHHHHHHHHHHHHHH-HHh
Confidence 999999999999999999999999998 764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=501.57 Aligned_cols=399 Identities=27% Similarity=0.457 Sum_probs=339.0
Q ss_pred HHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-
Q 012138 41 QLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR- 112 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~- 112 (470)
++++.+++|.++.+. ..|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~ 89 (466)
T PRK07036 10 ALAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPF 89 (466)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccc
Confidence 345556667665543 248899999999999999999999999999999999999999999999998765433
Q ss_pred -CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 113 -AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 113 -~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
.+.++...+++++|.+..+ .++++|++||+||++.|+|+++.++.. +| .+++.+||.+.++|||++.+++++++.
T Consensus 90 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~-~g-~t~r~~Ii~~~~~YHG~t~~a~s~~~~ 167 (466)
T PRK07036 90 GDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNV-RG-RPAKKHIITRGDAYHGSTYLTASLTGK 167 (466)
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHh-cC-CCCccEEEEEcCccCCccHhhhcccCC
Confidence 2567888999999999874 679999999999999999999875321 11 134678999999999999999999887
Q ss_pred cccccCCCCCCCCeeeecCCC-----------------HHHHHHHHHh-cCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 190 NEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~-~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
+.++..|.+..+++..+++++ ++.+++.+.. .++++++||+||+++.+|.+.|+++|+++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr 247 (466)
T PRK07036 168 AADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMR 247 (466)
T ss_pred CcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHH
Confidence 777777777665555444322 2456666654 3468999999999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCccccc-cCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCC
Q 012138 252 DLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGST 323 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~~G~~~~~~-~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t 323 (470)
++|++||+++|+|||++||||+|++|+++ ++++.||++++||+++||++|+|++++++++++.+.. ..+++|
T Consensus 248 ~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T 327 (466)
T PRK07036 248 EICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFT 327 (466)
T ss_pred HHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCC
Confidence 99999999999999999999999999887 7899999999999999996699999999999998752 257789
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------chhH
Q 012138 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PVSA 395 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~ 395 (470)
|++||++|+++.++|+.++++++.+++++++++|++.|+++ .++| .+.++++.|+++++++..+.. ....
T Consensus 328 ~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~~-~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~ 405 (466)
T PRK07036 328 YSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-RELP-LVGDVRGDHLMACVECVADKGSKALLPEDIAIG 405 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccCC-CEEEEEeeceEEEEEEccCccccCCCCchhHHH
Confidence 99999999999999999998999999999999999999987 4575 889999999999999964321 0124
Q ss_pred HHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 396 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 396 ~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
..+.+.|+++||++.+.+ +.+||+||+++|++||++++++|+++++ ++
T Consensus 406 ~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~~~id~~~~~l~~al~-~~ 453 (466)
T PRK07036 406 QRIDRHCQERGLLVRPLE-HLCVLSPPLIITRAQIDEIVAILRAAIE-ET 453 (466)
T ss_pred HHHHHHHHHCCcEEeecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHH-HH
Confidence 578889999999998764 7899999999999999999999999998 76
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=497.94 Aligned_cols=397 Identities=28% Similarity=0.469 Sum_probs=339.6
Q ss_pred HHHHHHHhhhcccCCC----CCc-eEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-C
Q 012138 40 QQLINLEYEYSAHNYH----PVP-IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-A 113 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~----~~p-~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~ 113 (470)
+++.+.+.++.++.+. +.| +++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~ 83 (429)
T PRK06173 4 QELLELDRQHIWHPYSSVTDPIPVYPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGG 83 (429)
T ss_pred HHHhhhhhcccccccccccccCCCceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence 3455555666655443 234 469999999999999999999999999999999999999999999998776443 3
Q ss_pred CCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-c
Q 012138 114 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-N 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~ 190 (470)
+.++...+|+++|++..+ .++++|++||+||++.|+|+++.++.. ++ .+++..||++.++|||++.+++++++. +
T Consensus 84 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~-~g-~~~r~~ii~~~~~yHG~t~~a~s~~~~~~ 161 (429)
T PRK06173 84 FTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQA-KG-EVQRTKFATIRSGYHGDTWHAMSVCDPVT 161 (429)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHH-hC-CCCCcEEEEECCCcCCcchhhhccCCCch
Confidence 567888999999999874 689999999999999999999986321 11 245678999999999999999988764 3
Q ss_pred ccccCCCCCCCCeeeecCC-----------CHHHHHHHHHhcCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcC
Q 012138 191 EAIRGFGPLLPGHLKVDFG-----------DITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-----------d~~~Le~~l~~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.++..|.+..+.+..+|++ +++.|++.+..+++++++||+||+ ++.+|.+.|+++|+++|+++|++||
T Consensus 162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g 241 (429)
T PRK06173 162 GMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYG 241 (429)
T ss_pred hhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcC
Confidence 4556666666655555543 366788888766678999999996 9999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-----CCccCCCCCCHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLASAV 333 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aa 333 (470)
++||+||||+||||+|++|+++++++.||+++|||+++||++|++++++++++++.+.+ ..+++||+++|++|++
T Consensus 242 ~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aa 321 (429)
T PRK06173 242 VLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAI 321 (429)
T ss_pred CeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999997699999999999998753 2578899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC
Q 012138 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 334 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
+.++|+.++++++.+++++++++|++.|+++ ..+| .+..+++.|+++.+++..+. ....+++.|+++||++.+.+
T Consensus 322 a~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~-~~~~-~v~~vRg~Gl~~~iel~~~~---~~~~i~~~l~e~Gi~v~~~g 396 (429)
T PRK06173 322 AAESIRLLLESPWQQNIQRIEAQLKQELAPA-AEFD-SVAEVRVLGAIGVVEMKEPV---NMATLQPRFVEHGIWVRPFG 396 (429)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-hcCC-CeeeeeccceEEEEEeCCcc---cHHHHHHHHHHCCeEEEecC
Confidence 9999999998889999999999999999986 3454 67889999999999997543 46789999999999998764
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++||.||+++|++|+++++++|++++. ++
T Consensus 397 -~~l~~~Ppl~it~~ei~~~~~~l~~~l~-~~ 426 (429)
T PRK06173 397 -KLVYIMPPFIISPDELSQLTSGLLRVLK-QE 426 (429)
T ss_pred -CEEEEeCCccCCHHHHHHHHHHHHHHHH-HH
Confidence 7999999999999999999999999998 53
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-63 Score=498.38 Aligned_cols=404 Identities=28% Similarity=0.467 Sum_probs=345.3
Q ss_pred CchHHHHHHHhhhcccCCCC-------CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc
Q 012138 37 SSSQQLINLEYEYSAHNYHP-------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 109 (470)
.++.++.+..+++.++.|.. .|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~ 86 (460)
T PRK06541 7 NSDTDLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAF 86 (460)
T ss_pred ccHHHHHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcC
Confidence 45677788778888776542 26889999999999999999999999999999999999999999999998765
Q ss_pred cCC-CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 110 SSR-AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 110 ~~~-~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
... .+.++...+++++|++..+ .++++|++||+||++.|+|+++.|+.. +|. +++..||.+.++|||++.+++++
T Consensus 87 ~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~-~g~-~~r~~ii~~~~~yHG~t~~a~s~ 164 (460)
T PRK06541 87 FPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKL-TGK-PGKHKVISRAIAYHGTTQGALAI 164 (460)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHh-cCC-CCccEEEEEcCcccCcchhhhcC
Confidence 433 4667888999999999863 579999999999999999999986321 111 35679999999999999999999
Q ss_pred cCCcccccCCCCCCCCeeeecCCC------------------HHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhH
Q 012138 187 SCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
++.+.++..|.+..+++..+|+++ ++.++++++.. ++++++||+||+++++|.+.|+++|+
T Consensus 165 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl 244 (460)
T PRK06541 165 TGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYF 244 (460)
T ss_pred cCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHH
Confidence 887777777777777766555332 36788888643 35799999999999999999899999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC----CccCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGST 323 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~----~~~~t 323 (470)
++|+++|++||++||+||||+||||+|++|+++++++.||+++|||+++||++|+|++++++++++.+... .+++|
T Consensus 245 ~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T 324 (460)
T PRK06541 245 ERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYT 324 (460)
T ss_pred HHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999977999999999999877532 46789
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---c---h----
Q 012138 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P---V---- 393 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~---~---- 393 (470)
|++||++++++.++|+.++++++.+++++++++|++.|+++.. +| .+..+++.|+|+.+++..+.. . .
T Consensus 325 ~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~-~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~ 402 (460)
T PRK06541 325 FGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-LP-IVGDVRGDGYFYGIELVKDKATKETFTDDESER 402 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-CC-CeEEEEecceEEEEEEecCcccccCCcchhhhh
Confidence 9999999999999999998888999999999999999999865 65 788999999999999854210 0 0
Q ss_pred -hHHHHHHHHHHcCceeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 394 -SAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 394 -~~~~~~~~l~~~Gv~~~~~--~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
....+.+.|+++||++.+. +.+.+||+||+.+|++||++++++|++++. ++
T Consensus 403 ~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~-~~ 456 (460)
T PRK06541 403 LLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLT-EA 456 (460)
T ss_pred hHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 1135778999999999764 457999999999999999999999999998 64
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=540.55 Aligned_cols=427 Identities=28% Similarity=0.409 Sum_probs=361.8
Q ss_pred cccccchhhhhHhhhcccCCCCCCCCCCC-CCCCCchHHHHHHHhhhcccCCC---CCceEEEeecCCEEEeCCCCeEEe
Q 012138 4 MGATRRNLHCLLSRVCRKRSYGAQPQGGT-SPSSSSSQQLINLEYEYSAHNYH---PVPIVFSQAKGSSIWDPEGNKYLD 79 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~g~~~~d~~G~~~lD 79 (470)
.|++++.+.++|+.+||+|+.++..+... .+...+..++++.+.++..+.+. +.|+++++++|+|+||.||++|||
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD 628 (1013)
T PRK06148 549 PGVGEPDYLDVWAALFPDPAALLGLPDEAVAQSGRDKAEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLD 628 (1013)
T ss_pred CCccCHhHHHHHhhhCCChHHHcCCChhhhccCCCCHHHHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEE
Confidence 47889999999999999999998866532 12223455666776676665543 789999999999999999999999
Q ss_pred ccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhch
Q 012138 80 FLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 80 ~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~ 157 (470)
|.+++ .++||+||+|.+++.+|++++.... .+.++...+++++|++.++ .++++|+|||+||++.|+|+++.+
T Consensus 629 ~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~~-~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~-- 703 (1013)
T PRK06148 629 CFNNV--CHVGHAHPRVVAAAARQAARLNTNT-RYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH-- 703 (1013)
T ss_pred cccCh--hhcCCCCHHHHHHHHHHHhhcCCcC-CcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHh--
Confidence 99985 6799999999999999999874433 4677888999999999874 578999999999999999999986
Q ss_pred hcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCe--------eeecCC--C-------HHHHHHHHH
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGH--------LKVDFG--D-------ITALEKIFK 219 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~--d-------~~~Le~~l~ 219 (470)
.|+..||++.++|||++.+++++++. .++.++.+.. +++ ...||+ + .+++++.++
T Consensus 704 ------tGr~~ii~~~~~YHG~t~~a~s~s~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 776 (1013)
T PRK06148 704 ------TGQRDAIVLDHAYHGTTTELIDLSPY-KFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA 776 (1013)
T ss_pred ------cCCCeEEEEcCCccCCCcchhhcCch-hhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence 36778999999999999999988763 2333343321 222 233454 2 145666664
Q ss_pred ---hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccccccCCCCcceeeccccc
Q 012138 220 ---ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKAL 295 (470)
Q Consensus 220 ---~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~~~~~~~~pdi~s~sK~l 295 (470)
..++++++||+||+++.+|.+.|+++|+++|+++|++||+++|+||||+||||+|. +|+++++++.||+++++|++
T Consensus 777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~l 856 (1013)
T PRK06148 777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPI 856 (1013)
T ss_pred hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccc
Confidence 23457999999999999999999999999999999999999999999999999997 78999999999999999999
Q ss_pred cCCCcceeEEEecHHHHhhcCcC-CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 296 GGGVIPVSAVLADKEVMLCIQPG-EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 296 ~gG~~~ig~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+||+ |+|++++++++++.+.++ .+++||++||++|+++.++|+.++++++.+++++++++|+++|+++..++| .+.+
T Consensus 857 ggG~-Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~ 934 (1013)
T PRK06148 857 GNGH-PMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFD-IIGD 934 (1013)
T ss_pred cCCc-ceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC-CceE
Confidence 9997 999999999999998765 378999999999999999999999999999999999999999999998886 8899
Q ss_pred EeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 375 VRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 375 ~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++.|+|+++++..+.. ......+++.|+++||++.+.+ .+++||.||+++|+++|++++++|++++. ++
T Consensus 935 VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~-~~ 1011 (1013)
T PRK06148 935 VRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLA-AA 1011 (1013)
T ss_pred EeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH-HH
Confidence 99999999999964321 1235678899999999998754 58999999999999999999999999998 64
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-63 Score=494.60 Aligned_cols=393 Identities=55% Similarity=0.949 Sum_probs=350.2
Q ss_pred chHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC
Q 012138 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 117 (470)
+++++++...++....+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+.+..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~ 82 (396)
T PRK04073 3 KSEKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSD 82 (396)
T ss_pred hHHHHHHHHHHhcccccCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCH
Confidence 36688888888777777788999999999999999999999999999999999999999999999999887765556777
Q ss_pred cHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 118 KFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
...+++++|+++.+.++++|++||++|++.|+++++.|++..+|.++++..||+++++|||++..++++++.+.++..+.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~ 162 (396)
T PRK04073 83 QLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFG 162 (396)
T ss_pred HHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCC
Confidence 88999999999988899999999999999999999987544334435667899999999999999999988777777788
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
+..+++..++|+|++++++++++ ++++|++||++||+|.+.|+++|+++|+++|++||++||+||+|+|||++|..+
T Consensus 163 ~~~~~~~~~~~~d~~~l~~~i~~---~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~ 239 (396)
T PRK04073 163 PMLPGIKKIPYGDLEALKAAITP---NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF 239 (396)
T ss_pred CCCCCceEeCCCCHHHHHHhccc---CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH
Confidence 88788889999999999998865 789999999999999999888999999999999999999999999999999888
Q ss_pred ccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012138 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 357 (470)
Q Consensus 278 ~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l 357 (470)
+++..++.||+++|||++++|.+|+|++++++++++.+....+.+||++++++++++.++|+.++++++.++.+++++++
T Consensus 240 ~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l 319 (396)
T PRK04073 240 ACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYF 319 (396)
T ss_pred HhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77888999999999999997633999999999999999877788899999999999999999988788999999999999
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.+.|+++. ++ .+..+++.|.|+.+++.. ++.+++++|+++||++.+.+++++||+||+.+|+|++++++++|
T Consensus 320 ~~~L~~l~--~~-~i~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~Gv~~~~~~~~~iRi~p~l~~t~e~i~~~~~~l 391 (396)
T PRK04073 320 KEQLKEID--NP-MIKEVRGRGLFIGVELNE-----PARPYCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKI 391 (396)
T ss_pred HHHHHhhc--CC-cccceecceEEEEEEecc-----hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHH
Confidence 99998873 22 567788999998887753 46789999999999998876789999999999999999999999
Q ss_pred HHHH
Q 012138 438 HDVL 441 (470)
Q Consensus 438 ~~~l 441 (470)
++++
T Consensus 392 ~~~l 395 (396)
T PRK04073 392 KAVL 395 (396)
T ss_pred HHHh
Confidence 9876
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=495.92 Aligned_cols=376 Identities=29% Similarity=0.459 Sum_probs=330.1
Q ss_pred ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC--CCe
Q 012138 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--YDM 134 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~ 134 (470)
|+++++++|+++||.|||+||||.+++++.++||+||+|.+++.+|++++.+... .+.++...+++++|++..+ .++
T Consensus 26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~ 105 (428)
T PRK07986 26 VYPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLEC 105 (428)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCE
Confidence 3789999999999999999999999999999999999999999999998765443 3467888999999999874 579
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-cccccCCCCCCCCeeeec------
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVD------ 207 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------ 207 (470)
++|++||+||++.|+|+++.|+.. ++ +++.+||++.++|||.+.+++++++. ..++..|.+..+++..++
T Consensus 106 v~f~~SGsEAve~AlklAr~~~~~-~g--~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 182 (428)
T PRK07986 106 VFLADSGSVAVEVAMKMALQYWQA-KG--EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRF 182 (428)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHh-cC--CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCccc
Confidence 999999999999999999986321 11 35678999999999999999988763 334455666666544443
Q ss_pred -----CCCHHHHHHHHHhcCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc
Q 012138 208 -----FGDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 281 (470)
Q Consensus 208 -----~~d~~~Le~~l~~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~ 281 (470)
++|++++++.++..++++++|++||+ ++.+|.+.|+++|+++|+++|++||++||+||||+||||+|++|++++
T Consensus 183 ~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~ 262 (428)
T PRK07986 183 DGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEH 262 (428)
T ss_pred chhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecc
Confidence 35778899999766668999999996 899999898999999999999999999999999999999999999999
Q ss_pred CCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC-----CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012138 282 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356 (470)
Q Consensus 282 ~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~ 356 (470)
+++.||++++||+++||++|+|++++++++++.+... .+++||++||++|+++.++|+.++++++.+++++++++
T Consensus 263 ~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~ 342 (428)
T PRK07986 263 AGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQ 342 (428)
T ss_pred cCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999966999999999999988653 37899999999999999999999998999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
|++.|+++.. +| .+.++++.|+++.+++..+. ....+.+.|+++||++.+.+ +.+||+||+++|++||++++++
T Consensus 343 l~~~l~~l~~-~~-~i~~vRg~Gl~~~ve~~~~~---~~~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei~~~~~~ 416 (428)
T PRK07986 343 LREELAPLRD-AP-MVADVRVLGAIGVVETTRPV---NMAALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQLQRLTAA 416 (428)
T ss_pred HHHHHHHHhc-CC-CEEeEeccceEEEEEeCCcc---cHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999864 65 78899999999999987543 46789999999999998764 7999999999999999999999
Q ss_pred HHHHHh
Q 012138 437 LHDVLE 442 (470)
Q Consensus 437 l~~~l~ 442 (470)
|.++++
T Consensus 417 l~~~l~ 422 (428)
T PRK07986 417 VNRAVQ 422 (428)
T ss_pred HHHHHh
Confidence 999997
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=496.72 Aligned_cols=395 Identities=31% Similarity=0.527 Sum_probs=337.9
Q ss_pred CchHHHHHHHhhhcccCC-C-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC
Q 012138 37 SSSQQLINLEYEYSAHNY-H-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF 114 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~-~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~ 114 (470)
++++++.+.+.++.++.+ . +.|+++++++|+++||.||++||||.++ ++.++||+||+|.+++.+|++++.+.+..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~ 110 (459)
T PRK06082 32 ERTQALLKRDSEVFLHQAMSTPCLDVLASAEGIYIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSPRRF 110 (459)
T ss_pred cchHHHHHHHHHHhcccccCCCCCceEEeeeeeEEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCccCcc
Confidence 345666665555444432 2 4589999999999999999999999854 788999999999999999999887655456
Q ss_pred CCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 115 YNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.++...+++++|+++.+ .++++|++||+||++.|+++++.+ .++..||++.++|||++.+++++++.+.+
T Consensus 111 ~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~--------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~ 182 (459)
T PRK06082 111 TNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHI--------TGNFKVVSLWDSFHGASLDAISVGGEACF 182 (459)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHh--------cCCCEEEEEeCCCcCccHHHHhhcCCccc
Confidence 78889999999999884 479999999999999999999986 35678999999999999999999887777
Q ss_pred ccCCCCCCCCeeeec--------CCC--------HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 193 IRGFGPLLPGHLKVD--------FGD--------ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~--------~~d--------~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
+..|.+..+++..+| +++ +++|++++++. +++++||+||+++.+ .+.|+++|+++|+++|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~ 260 (459)
T PRK06082 183 RQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE-GGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDK 260 (459)
T ss_pred ccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC-CCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHH
Confidence 777777777665554 333 35578888643 479999999999984 666699999999999999
Q ss_pred cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC-CccCCCCCCHHHHHHHH
Q 012138 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 257 ~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~ 335 (470)
||++||+||||+||||+|++|+++++|+.||++++||+++||++|+|++++++++++.+... .+ +||++||++|+++.
T Consensus 261 ~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~ 339 (459)
T PRK06082 261 HNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGH-YTHEKSPLGCAAAL 339 (459)
T ss_pred cCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999966999999999988655322 34 79999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceec
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAK 410 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~ 410 (470)
++|+.++++++.+++++++++|++.|+++..++| .+.++++.|+|+++++..+.. ......+...|+++||++.
T Consensus 340 a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~ 418 (459)
T PRK06082 340 ATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYP-LIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFK 418 (459)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCC-CeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEE
Confidence 9999999889999999999999999999988886 889999999999999964321 1125578888999999998
Q ss_pred cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 411 PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 411 ~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+.+.+||+||+++|++||+++++++++++. ++
T Consensus 419 ~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~-~~ 452 (459)
T PRK06082 419 VSQGNVIQLSPPLIITREELTQALAILEEAIA-KI 452 (459)
T ss_pred ecCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-HH
Confidence 87779999999999999999999999999998 76
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-63 Score=492.99 Aligned_cols=376 Identities=26% Similarity=0.419 Sum_probs=325.5
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC--C
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--Y 132 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~ 132 (470)
+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+... .+.++...+++++|++..+ .
T Consensus 21 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 100 (422)
T PRK05630 21 VRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGL 100 (422)
T ss_pred CCCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCc
Confidence 358999999999999999999999999999999999999999999999998776543 3567788999999999873 6
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-cccccCCCCCCCCeeeecCC--
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG-- 209 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 209 (470)
++++|++||+||++.|+|+++.|+... +. +++.+|+++.++|||++.+++++++. ..++..|.+..++...+|++
T Consensus 101 ~~v~f~~SGseA~e~AlklAr~~~~~~-g~-~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~ 178 (422)
T PRK05630 101 DHVFYSDSGSVSVEVAIKMALQYSKGQ-GH-PERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPV 178 (422)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhc-CC-CCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcc
Confidence 899999999999999999999864322 21 35678999999999999999988764 33455566655554444432
Q ss_pred ------C----HHHHHHHHHhcCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc
Q 012138 210 ------D----ITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278 (470)
Q Consensus 210 ------d----~~~Le~~l~~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~ 278 (470)
+ .+.+++++.+ ++++||+||+ ++.+|.+.|+++|+++|+++|++||++||+||||+||||+|++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~---~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a 255 (422)
T PRK05630 179 RGSSPQEISEYLRSLELLIDE---TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFA 255 (422)
T ss_pred cCCChHHHHHHHHHHHHHHhh---ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhH
Confidence 1 2345555553 8999999996 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc------CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012138 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 352 (470)
Q Consensus 279 ~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 352 (470)
++++++.||+++++|+++||++|+|++++++++++.+.. ..|++||++||++|+++.++|+.++++++.+++++
T Consensus 256 ~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~ 335 (422)
T PRK05630 256 TLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKR 335 (422)
T ss_pred HHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 999999999999999999997699999999999988753 25789999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHH
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~ 432 (470)
++++|++.|+.+.. +| .+.++++.|+++.+++..+. .+..+.+.|+++||++.+.+ +++||.||+++|++||++
T Consensus 336 ~g~~l~~~L~~l~~-~~-~v~~vRg~Gl~~~ie~~~~~---~~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it~~~i~~ 409 (422)
T PRK05630 336 IEAELIAGLSPLAH-LP-GVADVRVLGAIGVVEMEQPV---DMEEATQAAVDHGVWLRPFG-RLVYVMPPYITTSEQIAQ 409 (422)
T ss_pred HHHHHHHHHHHhhc-CC-CeeeeeccccEEEEEECCcc---cHHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHH
Confidence 99999999988754 55 78899999999999996543 46688999999999998764 899999999999999999
Q ss_pred HHHHHHHHHh
Q 012138 433 GSKALHDVLE 442 (470)
Q Consensus 433 ~~~~l~~~l~ 442 (470)
++++|+++++
T Consensus 410 ~~~~l~~al~ 419 (422)
T PRK05630 410 ICAALAAAVK 419 (422)
T ss_pred HHHHHHHHHh
Confidence 9999999997
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=489.69 Aligned_cols=377 Identities=35% Similarity=0.622 Sum_probs=334.2
Q ss_pred CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC
Q 012138 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 133 (470)
Q Consensus 54 ~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 133 (470)
+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+.+..+++++..+++++|.+..+.+
T Consensus 15 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 94 (395)
T PRK03715 15 TNRPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFD 94 (395)
T ss_pred cCCCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccCCC
Confidence 44568899999999999999999999999999999999999999999999998766555566788889999998877788
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHH
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 213 (470)
+++|++||+||++.|+++++.++. ++ .+++..||+++++|||++.+++++++.+.++..+.|..+++...+++|+++
T Consensus 95 ~v~f~~SGseA~e~Aik~ar~~~~--~~-~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~ 171 (395)
T PRK03715 95 KVFFANSGAEANEGAIKLARKWGR--KH-KNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIAS 171 (395)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhh--cc-CCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHH
Confidence 999999999999999999997632 11 135678999999999999999999987777777777777777778899999
Q ss_pred HHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccc
Q 012138 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK 293 (470)
Q Consensus 214 Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK 293 (470)
+++++.+ ++++|++||+++++|.+.|+++|+++|+++|++||+++|+||+|+||||+|++|+++++++.||++++||
T Consensus 172 l~~~l~~---~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK 248 (395)
T PRK03715 172 VEKLITD---KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGK 248 (395)
T ss_pred HHHHcCC---CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehh
Confidence 9999864 7999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+++||+ |+|++++++++.. +....+++||+++|++++++.++|+.++++++.+++++++++|+++|+++..+++ +.
T Consensus 249 ~lg~G~-p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~--i~ 324 (395)
T PRK03715 249 GIGGGV-PLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERG--LE 324 (395)
T ss_pred hhhCCc-ceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcCC--cC
Confidence 999997 9999999999863 4445678999999999999999999999889999999999999999999887764 66
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHc---CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKER---GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+++.|+|+.+++..+ ....+.+.+++. ||++.+...+.+||+||+.+|++||++++++|+++++ ++
T Consensus 325 ~vrG~Glm~~i~l~~~----~~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~-~~ 394 (395)
T PRK03715 325 GERGEGLLRALLLGKD----IGPQIVEKARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVLD-KL 394 (395)
T ss_pred eEEcceeEEEEEecCc----hHHHHHHHHHhccCCCEEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHH-hh
Confidence 7899999999998643 244566666666 9999766678999999999999999999999999998 64
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=492.95 Aligned_cols=385 Identities=32% Similarity=0.507 Sum_probs=333.7
Q ss_pred CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhh--C
Q 012138 55 HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--G 131 (470)
Q Consensus 55 ~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~ 131 (470)
.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+.+. .+.++...+++++|++.. +
T Consensus 26 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~ 105 (442)
T PRK13360 26 KKAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG 105 (442)
T ss_pred cCCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC
Confidence 3468999999999999999999999999999999999999999999999998765543 356788899999999987 3
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCC-
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD- 210 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 210 (470)
.++++|++||+||++.|+|+++.|+.. ++ .+++..||++.++|||++.+++++++.+..+..|.+..+++..+|++.
T Consensus 106 ~~~v~f~~sGseA~e~AlklAr~~~~~-~g-~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~ 183 (442)
T PRK13360 106 LNHVFFTNSGSESVDTALKIALAYHRA-RG-EGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLD 183 (442)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHh-cC-CCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCch
Confidence 689999999999999999999986321 11 134668999999999999999999988777777777766665555541
Q ss_pred -----------------HHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 211 -----------------ITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 211 -----------------~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
+++||+++... ++++++||+||+++++|.+.|+++|+++|+++|++||++||+||||+||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~Gr 263 (442)
T PRK13360 184 LARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGR 263 (442)
T ss_pred hhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 46788888754 357999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC-------CccCCCCCCHHHHHHHHHHHHHHhhhh
Q 012138 273 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-------EHGSTFGGNPLASAVAIASLDVIRDEK 345 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~-------~~~~t~~~~~~~~aaa~a~l~~~~~~~ 345 (470)
+|++|+++++++.||+++|||+++||++|+|++++++++++.+... .+++||++||++|+++.++|+.+++++
T Consensus 264 tG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~ 343 (442)
T PRK13360 264 LGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREG 343 (442)
T ss_pred CccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999966999999999999877532 377899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHHHHcCceeccCCCCEEEEecCC
Q 012138 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGILAKPTHDTIVRLTPPL 423 (470)
Q Consensus 346 ~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~ 423 (470)
+.++++++++++++.|+++.. +| .+.++++.|++..+++..... ...+.++.+.|+++||++.+. ++.+||+||+
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~-~~-~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lr~~Ppl 420 (442)
T PRK13360 344 LLTRAARLAPYWEDALHSLRD-AP-HVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT-GDILALSPPL 420 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CC-CeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec-CCEEEEeCCC
Confidence 999999999999999998854 54 678999999999988854211 123567888999999999776 4689999999
Q ss_pred CCCHHHHHHHHHHHHHHHhccc
Q 012138 424 SISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 424 ~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+|++||++++++|+++++ ++
T Consensus 421 ~~t~~eid~~~~~l~~~l~-~~ 441 (442)
T PRK13360 421 IIEEAQIDELFDILAQALK-ET 441 (442)
T ss_pred ccCHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999997 54
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=490.86 Aligned_cols=386 Identities=32% Similarity=0.533 Sum_probs=344.1
Q ss_pred CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC
Q 012138 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY 132 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 132 (470)
.+.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+....+.++...+++++|+++.+.
T Consensus 17 ~~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 96 (406)
T PRK12381 17 VYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFA 96 (406)
T ss_pred hcCCCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCCC
Confidence 34567899999999999999999999999999999999999999999999998865544445677789999999998888
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHH
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
++++|++||+||++.|+++++.++... +. +++..|+.++++|||++.+++++++.+.++..|.+..+++..++|+|++
T Consensus 97 ~~v~~~~sGseA~e~Alk~ar~~~~~~-~~-~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T PRK12381 97 DRVFFCNSGAEANEAALKLARKYAHDR-YG-SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLN 174 (406)
T ss_pred CeEEEcCCcHHHHHHHHHHHHHHHhhc-CC-CCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHH
Confidence 999999999999999999999864321 11 3566899999999999999999998877777788887888889999999
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s 292 (470)
++++.+++ ++++|++||+++.+|.+.|+++|+++|+++|++||++||+||+|+|||++|.+++++++++.||+++||
T Consensus 175 ~l~~~l~~---~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~s 251 (406)
T PRK12381 175 SASALIDD---QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTA 251 (406)
T ss_pred HHHHhccC---CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEeh
Confidence 99999975 799999999998899888899999999999999999999999999999999988888899999999999
Q ss_pred ccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 293 KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 293 K~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
|+++||+ |+|++++++++++.+....+++||+++|++++++.++|+.++++++.++++++++++.+.|+++..+++ .+
T Consensus 252 K~l~gG~-~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~ 329 (406)
T PRK12381 252 KALGGGF-PIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINARYG-LF 329 (406)
T ss_pred hhhhCCC-ceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCC-CE
Confidence 9999997 999999999999999877788999999999999999999998888999999999999999999877665 67
Q ss_pred EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 373 KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
..+++.|++++++++... ......+.+.|+++||++.+.+++++||+||+.+|+++|++++++|+++++ ++..
T Consensus 330 ~~vrg~Gl~~~~~l~~~~-~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~-~~~~ 402 (406)
T PRK12381 330 SEIRGLGLLIGCVLNAEY-AGKAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTGLDRFARACE-RFVS 402 (406)
T ss_pred EEEecCeEEEEEEecCch-hhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH-HHHh
Confidence 888999999999886421 114678899999999999877678999999999999999999999999998 7643
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=534.36 Aligned_cols=424 Identities=27% Similarity=0.421 Sum_probs=357.7
Q ss_pred cccccchhhhhHhhhcccCCCCCCCCCCCCCCCCchHHHHHHHhhhcccC---CCCCceEEEeecCCEEEeCCCCeEEec
Q 012138 4 MGATRRNLHCLLSRVCRKRSYGAQPQGGTSPSSSSSQQLINLEYEYSAHN---YHPVPIVFSQAKGSSIWDPEGNKYLDF 80 (470)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~g~~~~d~~G~~~lD~ 80 (470)
-|++++.+.+.|+.+||+|++++..++.. +..++.+++++.++++... +.+.|+++++++|+|+||.+|++||||
T Consensus 513 pgv~~~~~~~~w~~~cpdP~~ll~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~ 590 (972)
T PRK06149 513 PLFARPSQAAAWLALCPSPAPLLGLPCDA--PPPDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDM 590 (972)
T ss_pred CCccCHHHHHHHHHhCcChHHHcCCCccc--CCCCHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEEC
Confidence 37889999999999999999999998744 2367888998888877653 345688999999999999999999999
Q ss_pred cCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchh
Q 012138 81 LSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 81 ~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
.+++ .++||+||+|.+++.+|++++.+.+ .+.++...+++++|++.+ +.++++|+|||+||++.|+|+++.+
T Consensus 591 ~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~~-~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~--- 664 (972)
T PRK06149 591 VNNV--TVLGHGHPRLAAAAARQWSLLNTNS-RFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAA--- 664 (972)
T ss_pred CCCc--cccCCCCHHHHHHHHHHHHhccccc-cccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHh---
Confidence 9886 3799999999999999999876543 356778899999999988 4689999999999999999999986
Q ss_pred cccCCCCCcEEEEEccCccccccchhcccCCcccccCC-CCCC--------CCeeeecCC--C-----HHHHHHHHH---
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF-GPLL--------PGHLKVDFG--D-----ITALEKIFK--- 219 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~--d-----~~~Le~~l~--- 219 (470)
.|+..||+++++|||++.++.++++.......+ .+.. ++....+++ + .+++++.++
T Consensus 665 -----tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 739 (972)
T PRK06149 665 -----SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELD 739 (972)
T ss_pred -----cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHh
Confidence 366789999999999999887765431111111 1111 122222232 2 345555553
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccccccCCCCcceeeccccccCC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKALGGG 298 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~~~~~~~~pdi~s~sK~l~gG 298 (470)
..++++++||+||+++.+|.+.|+++|+++|+++|++||+++|+||||+||||+|+ +|+++++|+.||++++||+++||
T Consensus 740 ~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G 819 (972)
T PRK06149 740 ASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNG 819 (972)
T ss_pred hcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCC
Confidence 23468999999999999999999999999999999999999999999999999997 57899999999999999999999
Q ss_pred CcceeEEEecHHHHhhcCc-CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 299 VIPVSAVLADKEVMLCIQP-GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~-~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
+ |+|++++++++++.+.. ..+.+|+++||++|+++.++|+.++++++.+++++++++|+++|+++..++| .+..++|
T Consensus 820 ~-Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~vrG 897 (972)
T PRK06149 820 H-PLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHP-LIGAVHG 897 (972)
T ss_pred e-eeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEee
Confidence 7 99999999999998864 3456788999999999999999999999999999999999999999988886 8999999
Q ss_pred cceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 378 RGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 378 ~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|+|+++++..+.. ......+++.|+++||++.+.+ .+++||.||+++|++++++++++|++++.
T Consensus 898 ~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~ 969 (972)
T PRK06149 898 MGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLT 969 (972)
T ss_pred cceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999853210 1235678999999999998765 38999999999999999999999999997
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=493.01 Aligned_cols=386 Identities=31% Similarity=0.499 Sum_probs=334.8
Q ss_pred CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC-
Q 012138 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG- 131 (470)
Q Consensus 54 ~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~- 131 (470)
+.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+.+. .+.++...+++++|++..+
T Consensus 28 ~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~ 107 (445)
T PRK09221 28 FKAAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPG 107 (445)
T ss_pred cCCCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC
Confidence 33568999999999999999999999999999999999999999999999998766544 3567788899999999873
Q ss_pred -CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCC
Q 012138 132 -YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 210 (470)
Q Consensus 132 -~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 210 (470)
.++|+|++||+||++.|+|+++.|+... + .+++.+||.+.++|||++.+++++++.+..+..|.+..+++..+|+++
T Consensus 108 ~~~~v~f~~sGseAve~AlklAr~~~~~~-g-~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (445)
T PRK09221 108 GLDHVFFTNSGSESVDTALKIALAYHRAR-G-QGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTL 185 (445)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhc-C-CCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCc
Confidence 6899999999999999999999864321 1 134668999999999999999999987777777777766665555432
Q ss_pred ------------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 211 ------------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 211 ------------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.++++++++..+ +++++||+||+++.+|.+.|+++|+++|+++|++||++||+||||+|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G 265 (445)
T PRK09221 186 DLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG 265 (445)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence 367888887553 6899999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
|+|.+|+++++++.||++++||+++||++|+|++++++++++.+.. ..+++||++||++++++.++|+.++++
T Consensus 266 RtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~ 345 (445)
T PRK09221 266 RLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE 345 (445)
T ss_pred cCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999996699999999999988743 246789999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHHHHcCceeccCCCCEEEEecC
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGILAKPTHDTIVRLTPP 422 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~ 422 (470)
++.++++++++++++.|+++. .+| .+.++++.|++..+++..... ...+..+.+.|+++||++.+. ++.+||+||
T Consensus 346 ~l~~~~~~~g~~l~~~l~~l~-~~~-~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~lr~~Pp 422 (445)
T PRK09221 346 DLFERAAELAPYFEDAVHSLK-GLP-HVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT-GDTIALSPP 422 (445)
T ss_pred cHHHHHHHHHHHHHHHHHhhc-cCC-CEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec-CCEEEEECC
Confidence 999999999999999999884 354 688999999999998864211 123567889999999999765 578999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccc
Q 012138 423 LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+|++||++++++|++++. ++
T Consensus 423 l~~t~~eid~~~~~l~~~l~-~~ 444 (445)
T PRK09221 423 LIIEKAQIDELVDALGDALR-AV 444 (445)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hh
Confidence 99999999999999999998 64
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-62 Score=490.33 Aligned_cols=398 Identities=30% Similarity=0.519 Sum_probs=344.2
Q ss_pred chHHHHHHHhhhcccCCC--CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-C
Q 012138 38 SSQQLINLEYEYSAHNYH--PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-F 114 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~--~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~ 114 (470)
++.++++.+++|..+.+. ..|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+.... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~ 81 (443)
T PRK08360 2 KPLEIIERYSKVISPANRVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYG 81 (443)
T ss_pred CHHHHHHHHHHhcccccccccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccccc
Confidence 356778888888776653 5699999999999999999999999999999999999999999999999987665443 3
Q ss_pred CCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-c
Q 012138 115 YNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-E 191 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~ 191 (470)
.++...+++++|++..+ .++++|++||+||++.|+|+++.+ .++..|+.+.++|||++.+++++++.. .
T Consensus 82 ~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~--------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~ 153 (443)
T PRK08360 82 FPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAY--------TKRRKILSYLRSYYGSTYGAMSLTGLDFP 153 (443)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHh--------cCCCeEEEEeCCcCCcCHHHHHhcCCCcc
Confidence 46778999999999874 478999999999999999999986 367799999999999999998887642 3
Q ss_pred cccCCCCCCCCeeeecCCC-----------------HHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 192 AIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
++..+.+ .+++..+||++ ++.++++++. .++++++|++||++|++|.++|+++|+++|++
T Consensus 154 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~ 232 (443)
T PRK08360 154 VRALVGE-LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKK 232 (443)
T ss_pred cccCCCC-CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence 4445555 45555555543 3456677754 23589999999999999999988999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHH
Q 012138 253 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 332 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~a 332 (470)
+|++||++||+||+|+|||++|++++++++++.||++++||++++|+ |+|++++++++++.+....+.+|++++|++++
T Consensus 233 l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~-pigav~~~~~i~~~~~~~~~~~T~~~~p~~~a 311 (443)
T PRK08360 233 ILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGL-PISATIGRAEIMDSLPPLAHAFTLSGNPVASA 311 (443)
T ss_pred HHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCc-eeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHH
Confidence 99999999999999999999999888888899999999999999997 99999999999999977678889999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCc
Q 012138 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGI 407 (470)
Q Consensus 333 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv 407 (470)
++.++|+.++++++.++++++++++++.|+++..++| .+.++++.|+++.+++..+.. ...+..+...|+++|+
T Consensus 312 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi 390 (443)
T PRK08360 312 AALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHE-LIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGL 390 (443)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCe
Confidence 9999999998888999999999999999999987776 788999999999999864320 1235678899999999
Q ss_pred eeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 408 LAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 408 ~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++.+...+.+||+||+.+|+++|++++++|+++++ ++++
T Consensus 391 ~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~-~~~~ 429 (443)
T PRK08360 391 IVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIE-DVEE 429 (443)
T ss_pred EEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 99776678999999999999999999999999999 7744
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-62 Score=489.21 Aligned_cols=399 Identities=36% Similarity=0.648 Sum_probs=343.6
Q ss_pred CCCCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC
Q 012138 34 PSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR 112 (470)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~ 112 (470)
.+.+.++++.+..+++..+.+. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+...
T Consensus 12 ~~~~~s~~l~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~ 91 (441)
T PRK05769 12 LPGPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL 91 (441)
T ss_pred CCCccHHHHHHHHHHhhCcccccCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC
Confidence 3446678888877777766653 578999999999999999999999999999999999999999999999998766443
Q ss_pred -CCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 113 -AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 113 -~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
.+.++...+++++|.+..+ .++++|++||+||++.|+|+++.+ .|+.+|+.+.++|||++.+++++++
T Consensus 92 ~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~--------tgr~~Ii~~~~~yHG~t~~~ls~t~ 163 (441)
T PRK05769 92 TDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYH--------TGRKYIIAFLGAFHGRTYGSLSLTA 163 (441)
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHH--------hCCCeEEEECCCcCCccHHHHHhcC
Confidence 3567788999999999874 479999999999999999999986 3667899999999999999998875
Q ss_pred C-cccccCCCCCCCCeeeecCCC------------------HHHHHH-HHHh--cCCCeEEEEEccccCCCccccCChhh
Q 012138 189 D-NEAIRGFGPLLPGHLKVDFGD------------------ITALEK-IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~d------------------~~~Le~-~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
. ...+..|.+..+++..+++++ ++.+++ +++. .++++++||+||+++.+|.+.|+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~ 243 (441)
T PRK05769 164 SKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNF 243 (441)
T ss_pred CCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHH
Confidence 4 345566777777766665532 234666 3332 24589999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCC
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~ 326 (470)
+++|+++|++||+++|+||+|+||||+|.+|+++++++.||+++|||++++|+ |+|++++++++++.+ ...+++||++
T Consensus 244 l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~-p~gav~~~~~i~~~~-~~~~~~T~~g 321 (441)
T PRK05769 244 FKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGL-PLGAVIGRAELMFLP-PGSHANTFGG 321 (441)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCc-ccEEEEEehhhhhcC-CCCCCCCCCc
Confidence 99999999999999999999999999999998999999999999999999997 999999999998654 4568899999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---chhHHHHHHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKMK 403 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~ 403 (470)
+|++++++.++|+.+++ ++.+++++++++|++.|+++..++| .+..+++.|+++.+++..+.. ......+.+.|+
T Consensus 322 ~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~ 399 (441)
T PRK05769 322 NPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYE-FIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAF 399 (441)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeecceEEEEEEeccCCccccHHHHHHHHHHHH
Confidence 99999999999999998 9999999999999999999988786 788999999999999854310 123567888999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++||++.+.+.+.+||+||+.+|++||++++++|++++. ++
T Consensus 400 ~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~-~~ 440 (441)
T PRK05769 400 KRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIK-EL 440 (441)
T ss_pred hCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 999999887778999999999999999999999999997 53
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-62 Score=493.46 Aligned_cols=378 Identities=30% Similarity=0.508 Sum_probs=326.1
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhCC--
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGY-- 132 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~-- 132 (470)
+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+++..+... .+.++...+++++|++..+.
T Consensus 20 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 99 (442)
T TIGR00709 20 KLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRK 99 (442)
T ss_pred CCCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcC
Confidence 468999999999999999999999999999999999999999999999998654332 35677889999999998742
Q ss_pred ---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 133 ---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 133 ---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
..+++++||+||++.|+|+++.| +|+..||++.++|||++.+++++++.+.++..+.+..+++..++++
T Consensus 100 ~~~~~~f~~~sGsEA~e~AlklAr~~--------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~ 171 (442)
T TIGR00709 100 MDYKLQFPGPSGADAVEAAIKLAKTY--------TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYP 171 (442)
T ss_pred CCccEEEeCCCHHHHHHHHHHHHHHh--------cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCC
Confidence 33566799999999999999986 3667899999999999999999988666666677766666666654
Q ss_pred CH-----------------HHHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 210 DI-----------------TALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 210 d~-----------------~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+. +.+++.+.. ..+++++||+||+++++|.+.|+++|+++|+++|++||++||+||||+|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG 251 (442)
T TIGR00709 172 HEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAG 251 (442)
T ss_pred ccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 31 224444432 2257999999999999999988999999999999999999999999999
Q ss_pred CcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
|||+|++|+++++++.||++++||++++|+ |+|+++++++ ++.+....+++||++||++|+++.++|+.++++++.++
T Consensus 252 fGRtG~~~a~~~~gv~PDiv~~gK~l~~G~-Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~ 329 (442)
T TIGR00709 252 FGRSGTMFAFEHAGIEPDFVVMSKAVGGGL-PLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQN 329 (442)
T ss_pred CCCCCchhHHHHcCCCCcEEEEcccccCCc-ccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999997 9999999988 46665567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----------chhHHHHHHHHHHcCceeccCC--CCE
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSAYDICLKMKERGILAKPTH--DTI 416 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~l~~~Gv~~~~~~--~~~ 416 (470)
+++++++|++.|+++..++| .+.++++.|+|+++++..+.. ......+...|+++||++.+.+ +++
T Consensus 330 ~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~ 408 (442)
T TIGR00709 330 AQERGERITSFLDDMIKEHP-CIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEV 408 (442)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCE
Confidence 99999999999999988886 889999999999999954310 0125678888999999987653 689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 417 VRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 417 iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+||.||+++|++|+++++++|++++. ++
T Consensus 409 l~~~Ppl~it~~ei~~~~~~l~~~l~-~~ 436 (442)
T TIGR00709 409 FRLLCPITIDQEECEEGISRFKQAVE-EA 436 (442)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999999999998 65
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=480.60 Aligned_cols=357 Identities=35% Similarity=0.653 Sum_probs=323.9
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeE
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 135 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 135 (470)
..|+++.+++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+....+.++...+++++|+++.+.+++
T Consensus 5 ~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v 84 (364)
T PRK04013 5 RKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEYV 84 (364)
T ss_pred CCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCCEE
Confidence 46889999999999999999999999999999999999999999999999877655557788899999999999888999
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHH
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALE 215 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le 215 (470)
+|++||+||++.|+++++.+ ++++.||++..+|||++.+++++++.+.++..|.|..+++..+|++|+++++
T Consensus 85 ~~~~SGseA~e~Alklar~~--------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~ 156 (364)
T PRK04013 85 YMGNSGTEAVEAALKFARLY--------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAK 156 (364)
T ss_pred EEeCchHHHHHHHHHHHHHH--------hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHH
Confidence 99999999999999999986 3666899999999999999999998887888888888888999999999999
Q ss_pred HHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccc
Q 012138 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKAL 295 (470)
Q Consensus 216 ~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l 295 (470)
+.+.+ ++++|++||+++.+|.+.|+++|+++|+++|++||+++|+||+|+|| |+|++|+++++++.||+++++|++
T Consensus 157 ~~i~~---~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~l 232 (364)
T PRK04013 157 EAITK---ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGI 232 (364)
T ss_pred HHhcC---CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccc
Confidence 99975 89999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 296 GGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 296 ~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+||+ |+|+++.++++ ....+++||++||++|+++.++|+.++++++.+++++. |+++.. +.+.++
T Consensus 233 ggG~-P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l~~l~~---~~v~~v 297 (364)
T PRK04013 233 GNGV-PVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------FIEIKG---ERVVTT 297 (364)
T ss_pred cCCc-eeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------HHHhcc---Ccceee
Confidence 9997 99999998775 23468899999999999999999999999998888764 233322 368899
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|+.|+|+++++.. ....+.+.|+++|+++.+.+.+++||.||+++|++|+++++++|+++++ ++
T Consensus 298 RG~Gl~~gve~~~-----~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~-~~ 361 (364)
T PRK04013 298 RGRGLMIGIVLKK-----PVGKYVEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVIN-DI 361 (364)
T ss_pred eeCcEEEEEEeCC-----cHHHHHHHHHhCCcEEeeCCCCEEEEeCCcccCHHHHHHHHHHHHHHHH-HH
Confidence 9999999999964 3567899999999999887779999999999999999999999999998 54
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=487.49 Aligned_cols=394 Identities=33% Similarity=0.591 Sum_probs=339.4
Q ss_pred hHHHHHHHhhhcccCCCC-CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCC
Q 012138 39 SQQLINLEYEYSAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYN 116 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~ 116 (470)
+.++.+..+++....+.. .|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+... .+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~ 82 (421)
T PRK06777 3 NSELNQRRLEATPRGVGVMCDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPY 82 (421)
T ss_pred hHHHHHHHHHhcccccCcCCCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCC
Confidence 345555555555544432 37999999999999999999999999999999999999999999999998765432 2456
Q ss_pred CcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccc
Q 012138 117 DKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEA 192 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 192 (470)
+...+++++|++..+ .++++|++||+||++.|+|+++.+ .++..|+.+.++|||++.+++++++. ..+
T Consensus 83 ~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~ 154 (421)
T PRK06777 83 ASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAY--------TGRPGVIAFGGAFHGRTLLTMALTGKVAPY 154 (421)
T ss_pred hHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHh--------hCCCeEEEEcCCcCCccHHHHhhcCCCccc
Confidence 778899999998864 579999999999999999999986 36678999999999999999988875 345
Q ss_pred ccCCCCCCCCeeeecCCC----------HHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcE
Q 012138 193 IRGFGPLLPGHLKVDFGD----------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d----------~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gil 260 (470)
+..|.++.+++..+++++ ++++++.+++ .++++++||+||+++++|...++++|+++|+++|++||++
T Consensus 155 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~l 234 (421)
T PRK06777 155 KVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGIL 234 (421)
T ss_pred ccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 666777766666666654 6678888864 3468999999999999998888999999999999999999
Q ss_pred EEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH
Q 012138 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 261 lI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 340 (470)
||+||||+||||+|++++++++++.||++++||+++||+ |+|++++++++++.+....+++||++||++|+++.++|+.
T Consensus 235 lI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~-pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~ 313 (421)
T PRK06777 235 LIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGGM-PISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDV 313 (421)
T ss_pred EEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCCC-ceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999888899999999999999999997 9999999999999998777889999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc----hhHHHHHHHHHHcCceeccCC--C
Q 012138 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP----VSAYDICLKMKERGILAKPTH--D 414 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~~--~ 414 (470)
++++++.++++++++++++.|+++..++| .+..+++.|+|+.+++..+... .....+.+.|+++||++.|++ +
T Consensus 314 ~~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g 392 (421)
T PRK06777 314 IAEEKLCQRALILGAHLVEVLEKAKASCP-AIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHG 392 (421)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhCC-CeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCCC
Confidence 98889999999999999999999988776 7889999999999988643211 124556677889999998864 5
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 415 TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 415 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+++||+||+++|++++++++++|.+++.
T Consensus 393 ~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 393 NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999875
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=485.12 Aligned_cols=374 Identities=36% Similarity=0.575 Sum_probs=337.0
Q ss_pred EEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCC
Q 012138 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNT 140 (470)
Q Consensus 61 ~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~s 140 (470)
+++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+....+.++...+++++|++..+.++|+|++|
T Consensus 1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~s 80 (382)
T PLN00144 1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNS 80 (382)
T ss_pred CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 46899999999999999999999999999999999999999999987766554567788999999999888889999999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCC------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSID------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 214 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 214 (470)
|+||++.|+|+++.++.. ++.+.+ +.+||.+.++|||++.+++++++.+.++..|.+..+++..+||+|+++|
T Consensus 81 GseA~e~AlklAr~~~~~-~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 159 (382)
T PLN00144 81 GTEANEAAIKFARKYQRV-RAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAA 159 (382)
T ss_pred cHHHHHHHHHHHHHHHhc-cCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHH
Confidence 999999999999986422 222111 4689999999999999999999887777788888888999999999999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccc
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKA 294 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~ 294 (470)
++++.. +++++|++||++||+|...++++|+++|+++|++||++||+||+|+|||++|.+++++++++.||+++|||+
T Consensus 160 ~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~ 237 (382)
T PLN00144 160 RKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKP 237 (382)
T ss_pred HHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEeccc
Confidence 998854 379999999999999998889999999999999999999999999999999998888889999999999999
Q ss_pred ccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 295 LGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 295 l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
++||+ |+|++++++++++.+....+++||+++|++++++.++|++++++++.++++++++++++.|+++..++| .+..
T Consensus 238 l~~G~-pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~~~~ 315 (382)
T PLN00144 238 LAGGL-PIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNP-HVKE 315 (382)
T ss_pred ccCCc-ceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCC-Ccee
Confidence 99997 999999999999999877889999999999999999999999899999999999999999998877775 6778
Q ss_pred EeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 375 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++.|++++++++. ....+++.++++||++.+++ .+.+||+||+.++++++++++++|.+++. ++
T Consensus 316 vrg~G~~~~l~l~~-----~~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~-~~ 381 (382)
T PLN00144 316 VRGVGLLVGIQLDV-----PAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLP-AL 381 (382)
T ss_pred eecCceEEEEEecC-----ccHHHHHHHHHCCeEEeecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-hc
Confidence 89999999999842 35679999999999998864 58999999999999999999999999998 64
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=488.90 Aligned_cols=374 Identities=32% Similarity=0.565 Sum_probs=330.2
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhh--C-
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--G- 131 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~- 131 (470)
+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+++..+... .+.++...+++++|++.. +
T Consensus 16 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~ 95 (412)
T TIGR02407 16 SFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPR 95 (412)
T ss_pred CCCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCcc
Confidence 578999999999999999999999999999999999999999999999987544332 345777889999999863 2
Q ss_pred -C-CeEEe-cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC
Q 012138 132 -Y-DMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF 208 (470)
Q Consensus 132 -~-~~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (470)
. ++++| +|||+||++.|+|+++.+ +++.+||++.++|||++.+++++++.+.++..+.+..+++..+|+
T Consensus 96 ~~~~~~~f~~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~ 167 (412)
T TIGR02407 96 GLDYKVQFPGPTGTNAVESALKLARKV--------TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPY 167 (412)
T ss_pred CCCceEEEeCCCchHHHHHHHHHHhhh--------cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCC
Confidence 3 25655 599999999999999986 366789999999999999999998877777778777777777887
Q ss_pred C--------CHHHHHHHHHhcC---CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 209 G--------DITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 209 ~--------d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
+ +++.+++++.+++ +++++||+||+++++|.+.|+++|+++|+++|++||++||+||||+||||+|++|
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~ 247 (412)
T TIGR02407 168 DGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFF 247 (412)
T ss_pred CCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhH
Confidence 4 4778899887543 4689999999999999988899999999999999999999999999999999999
Q ss_pred ccccCCCCcceeeccccccC-CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Q 012138 278 ASDWEEVRPDMVILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRDEKLAERSAHLGE 355 (470)
Q Consensus 278 ~~~~~~~~pdi~s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~~~~~~~~~~~~~~ 355 (470)
+++++++.||++++||+++| |+ |+|++++++++ +.+....+++||++||++|+++.++++. ++++++.++++++++
T Consensus 248 a~~~~~v~PDi~~~~K~lg~~G~-pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~ 325 (412)
T TIGR02407 248 SFEPAGIEPDIVCLSKSISGYGL-PLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSE 325 (412)
T ss_pred HhcccCCCCCEEEechhccCCcc-ceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999998 97 99999999887 6666667889999999999999999995 777889999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~ 433 (470)
+++++|+++...+|..+..+++.|++++++++... ....+.+.|+++||++.+.+ .+.+||+||+.+|++|++++
T Consensus 326 ~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~---~~~~~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~ 402 (412)
T TIGR02407 326 IIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGD---LAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQG 402 (412)
T ss_pred HHHHHHHHHHhhCCCceEeeecceeEEEEEecChH---HHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHH
Confidence 99999999888876456789999999999986543 56789999999999997653 57999999999999999999
Q ss_pred HHHHHHHHh
Q 012138 434 SKALHDVLE 442 (470)
Q Consensus 434 ~~~l~~~l~ 442 (470)
+++|+++++
T Consensus 403 ~~~l~~~l~ 411 (412)
T TIGR02407 403 LDILEQAVE 411 (412)
T ss_pred HHHHHHHHh
Confidence 999999987
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=456.40 Aligned_cols=387 Identities=34% Similarity=0.574 Sum_probs=344.0
Q ss_pred ccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh
Q 012138 51 AHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 51 ~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 130 (470)
...|.+.|+++.+++|+++||.+|++||||.++|++..+||++|++.+++.+++.++.++...++.....++++.|.+..
T Consensus 32 ~~t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~ 111 (433)
T KOG1401|consen 32 VSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVL 111 (433)
T ss_pred eeecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcc
Confidence 44577889999999999999999999999999999999999999999999999999998877665555788999999887
Q ss_pred ---CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec
Q 012138 131 ---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD 207 (470)
Q Consensus 131 ---~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (470)
..++|+|+|||||||+.||+++++.+..+ .|.++..+|.+.++|||+++++++.+++..++.++.|..|++...+
T Consensus 112 ~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~--~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ 189 (433)
T KOG1401|consen 112 GKGSAERVFFCNSGTEANETALKFARKFTGKK--HPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAE 189 (433)
T ss_pred cCCCccEEEEecCCcHHHHHHHHHHHHhhccc--CCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecc
Confidence 68999999999999999999999865443 3344567999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc
Q 012138 208 FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287 (470)
Q Consensus 208 ~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd 287 (470)
|||..+|++.++.+.+.+++||+||+++.+|.++++++|+..|+++|+++|+++|.||||+||||+|..|++++++++||
T Consensus 190 ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PD 269 (433)
T KOG1401|consen 190 YNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD 269 (433)
T ss_pred cCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccCCCcceeEEEecHHHHhhcCcCCc---cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEH---GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 288 i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~---~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 364 (470)
|.|++|.|+||+ |+|++++++++++.+.+..+ ++||++||++|.++..+++.+.++++.+++...++.|++.|.+.
T Consensus 270 I~t~aK~L~gGl-PigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~ 348 (433)
T KOG1401|consen 270 ITTVAKPLGGGL-PIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEY 348 (433)
T ss_pred ceeehhhccCCc-eeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 99999999999999988766 99999999999999999999999999999999999999999998
Q ss_pred HhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCC----CEEEEec--CCC--CCHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD----TIVRLTP--PLS--ISSNELQEGSKA 436 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~iR~~~--~~~--~t~e~i~~~~~~ 436 (470)
..++|..+....++|+++++.+..+ ...+.+..++.|.++.+... ..+|+.| .+. +++|.+++++++
T Consensus 349 ~~~~~~~i~g~~grgl~ig~~~~~p-----~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i 423 (433)
T KOG1401|consen 349 LKKTPNSICGGVGRGLVIGFEFEGP-----VYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTI 423 (433)
T ss_pred hccCCCceeeeeeeEEEEEEEEeec-----hhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHH
Confidence 8777655655588999999877653 34555556666665554432 3478888 333 348999999999
Q ss_pred HHHHHhcccC
Q 012138 437 LHDVLELDLP 446 (470)
Q Consensus 437 l~~~l~~~~~ 446 (470)
+.+.+. ++.
T Consensus 424 ~~~~l~-~~~ 432 (433)
T KOG1401|consen 424 LEKVLS-ALN 432 (433)
T ss_pred HHHHHH-Hhc
Confidence 999998 664
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=485.23 Aligned_cols=392 Identities=31% Similarity=0.563 Sum_probs=340.0
Q ss_pred HHHHHHhhhcccCCCC-CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCc
Q 012138 41 QLINLEYEYSAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDK 118 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~ 118 (470)
++++....+..+.+.+ .|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+... .+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~ 84 (421)
T PRK09792 5 EFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYES 84 (421)
T ss_pred HHHHHHHhhcccccccCCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHH
Confidence 4555544444444533 37899999999999999999999999999999999999999999999998765432 346777
Q ss_pred HHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccccc
Q 012138 119 FPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIR 194 (470)
Q Consensus 119 ~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~ 194 (470)
..+++++|++..+ .++++|++||+||++.|+|+++.+ +|+..|+++.++|||++.+++++++. ..++.
T Consensus 85 ~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 156 (421)
T PRK09792 85 YVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAH--------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI 156 (421)
T ss_pred HHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHh--------cCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence 8899999998764 368999999999999999999986 36678999999999999999988775 34666
Q ss_pred CCCCCCCCeeeecCC----------CHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 195 GFGPLLPGHLKVDFG----------DITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~----------d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
+|.++.+++..+|++ +++++++++++. .+++++|++||+++++|.+.++++|+++|+++|++||++||
T Consensus 157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK09792 157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI 236 (421)
T ss_pred CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 777776666666663 357888888742 35799999999999999988899999999999999999999
Q ss_pred EeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh
Q 012138 263 ADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~ 342 (470)
+||+|+||||+|++++++++++.||+++|||+++||+ |+|++++++++++.+....+++||++||++|+++.++++.++
T Consensus 237 ~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G~-pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~ 315 (421)
T PRK09792 237 ADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGM-PLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIID 315 (421)
T ss_pred EeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCCC-ceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999997 999999999999998877889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----chhHHHHHHHHHHcCceeccCC--CCE
Q 012138 343 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLKMKERGILAKPTH--DTI 416 (470)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~Gv~~~~~~--~~~ 416 (470)
++++.++++++++++++.|+++..++| .+..+++.|+++++++..+.. ......+++.|+++||++.+.+ ++.
T Consensus 316 ~~~~~~~~~~~g~~l~~~l~~l~~~~p-~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~ 394 (421)
T PRK09792 316 KESLCERANQLGQRLKNTLIDAKESVP-AIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNV 394 (421)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCC-CcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCE
Confidence 888999999999999999999988886 678899999999999964321 1246778999999999987533 589
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 417 VRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 417 iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+||.||+.++++||++++++|.+++.
T Consensus 395 irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 395 IRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999886
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=488.61 Aligned_cols=385 Identities=34% Similarity=0.543 Sum_probs=330.0
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC--C
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--Y 132 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~ 132 (470)
+.| ++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+... .+.++...+++++|++.++ .
T Consensus 13 ~~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 91 (447)
T PRK06917 13 PYP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDL 91 (447)
T ss_pred CCC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 456 58999999999999999999999999999999999999999999998755433 3567888999999999874 4
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec-----
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD----- 207 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 207 (470)
++++|++||+||++.|+|+++.|+. .++. +++.+|+.+.++|||++.+++++++....+..|.+..+++..++
T Consensus 92 ~~v~f~~sGsEAve~AlklAr~~~~-~rg~-t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~ 169 (447)
T PRK06917 92 NWSFFVNSGSEANETAMKIAIQHFQ-ERGI-QGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCY 169 (447)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCccc
Confidence 6899999999999999999988631 1221 35679999999999999999998877666555655544322222
Q ss_pred ------------CCCHHHHHHHHHhcC-CCeEEEEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 208 ------------FGDITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 208 ------------~~d~~~Le~~l~~~~-~~~~~vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
+++++.+++++++++ +++++||+||+++ .+|.+.|+++|+++|+++|++||+++|+|||++||||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRt 249 (447)
T PRK06917 170 RCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRT 249 (447)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcc
Confidence 113567888887654 4799999999987 46799999999999999999999999999999999999
Q ss_pred CCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
|++|+++++++.||++++||+++||++|+|++++++++++.+... .+++||++||++++++.++|+.++++++.++
T Consensus 250 G~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~ 329 (447)
T PRK06917 250 GAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEK 329 (447)
T ss_pred cchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHH
Confidence 999999999999999999999999966999999999999987542 4678999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------chhHHHHHHHHHHcCceeccCC-------C
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PVSAYDICLKMKERGILAKPTH-------D 414 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~Gv~~~~~~-------~ 414 (470)
+++++++|++.|+++..++| .+.++++.|+|+.+++..+.. ......+++.|+++||++.+.. .
T Consensus 330 ~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~ 408 (447)
T PRK06917 330 AAEKGEYLIKGLQKVQQQST-IIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEG 408 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCC
Confidence 99999999999999988886 889999999999999953210 0135678889999999997652 5
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 415 TIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 415 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+||+||+++|++||++++++|.++++ ++
T Consensus 409 ~~i~l~Ppl~it~~eid~~~~~l~~~l~-~~ 438 (447)
T PRK06917 409 DAVIIAPPMTITYSELDELLSIFAKSVE-EM 438 (447)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHH-HH
Confidence 7999999999999999999999999998 76
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=487.33 Aligned_cols=385 Identities=32% Similarity=0.566 Sum_probs=332.7
Q ss_pred ccCC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhh
Q 012138 51 AHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTS 128 (470)
Q Consensus 51 ~~~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 128 (470)
...+ .+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+++..+... .+.++...+++++|++
T Consensus 14 ~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 14 VRSYCRSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred HhccCCCCCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 3334 3578999999999999999999999999999999999999999999999987544332 3456778899999988
Q ss_pred hh----CCC-eEEe-cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC
Q 012138 129 MF----GYD-MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG 202 (470)
Q Consensus 129 ~~----~~~-~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 202 (470)
.. +.+ +++| +|||+||++.|+|+++.+ +++.+||++.++|||++.+++++++.+.++..+.+..++
T Consensus 94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~ 165 (425)
T PRK09264 94 TILKPRGLDYKVQFTGPTGTNAVEAALKLARKV--------TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNN 165 (425)
T ss_pred hhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHh--------cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCC
Confidence 64 244 5656 589999999999999986 366789999999999999999998877777777777677
Q ss_pred eeeecCC--------CHHHHHHHHHhcC---CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 203 HLKVDFG--------DITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 203 ~~~~~~~--------d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
+..+|++ |+++|++++++++ +++++||+||+++.+|.+.++++|+++|+++|++||++||+||||+|||
T Consensus 166 ~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~G 245 (425)
T PRK09264 166 VTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCG 245 (425)
T ss_pred eEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCc
Confidence 7777774 7788999997542 4689999999999999988899999999999999999999999999999
Q ss_pred ccCCccccccCCCCcceeeccccccC-CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHH-HHHhhhhHHHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL-DVIRDEKLAER 349 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l-~~~~~~~~~~~ 349 (470)
|+|.+|+++++++.||++++||++++ |+ |+|++++++++ +.+....+++||++||++++++.+++ +.++++++.++
T Consensus 246 rtG~~~~~~~~~v~PDi~t~~K~l~~~G~-pigav~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~ 323 (425)
T PRK09264 246 RTGTFFSFERAGITPDIVTLSKSISGYGL-PMALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKE 323 (425)
T ss_pred cccHHHHHhhcCCCCCEEEeccccCCCcc-ceEEEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999989999999999999999998 97 99999999987 46655678889999999999999999 66667789999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCH
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISS 427 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~ 427 (470)
++++++++++.|+++..++|..+..+++.|++++++++... ....+++.|+++||++.+.+ .+.|||+||+.+|+
T Consensus 324 ~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~---~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~ 400 (425)
T PRK09264 324 VKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGE---LAGKIAAEAFENGLIIETSGPEDEVVKLLPPLTIDE 400 (425)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChH---HHHHHHHHHHHCCCEEeccCCCCCEEEEeCCCCCCH
Confidence 99999999999999877775334678999999999886543 56789999999999997754 57999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCC
Q 012138 428 NELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
++|++++++|.++++ ++.+..
T Consensus 401 ~ei~~~~~~l~~~l~-~~~~~~ 421 (425)
T PRK09264 401 EELEEGLDILEEAVA-EVLAEE 421 (425)
T ss_pred HHHHHHHHHHHHHHH-HHHhcc
Confidence 999999999999999 764433
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=488.37 Aligned_cols=396 Identities=34% Similarity=0.596 Sum_probs=341.5
Q ss_pred hHHHHHHHhhhcccCCCC-C-ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCC
Q 012138 39 SQQLINLEYEYSAHNYHP-V-PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFY 115 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-~-p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 115 (470)
..++++...++..+.+.. . |+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+.+ ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~ 84 (433)
T PRK08117 5 WSDLVERYPQLLAPALAKDHPNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIY 84 (433)
T ss_pred HHHHHHHHHHHhhhhccccCCCceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccC
Confidence 456666666665554432 3 489999999999999999999999999999999999999999999999876654 2356
Q ss_pred CCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccc
Q 012138 116 NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 192 (470)
++...+++++|+++. +.++++|++||+||++.|+++++.+ .|+..|++++++|||++.+++++++. +.+
T Consensus 85 ~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~ 156 (433)
T PRK08117 85 YESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHV--------TKRPYIISFTGCFHGRTLGALSVTTSKSKY 156 (433)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHh--------cCCCeEEEECCCcCCcCHHHHhhcCCCccc
Confidence 788899999999987 3678999999999999999999986 36678999999999999999887763 445
Q ss_pred ccCCCCCCCCeeeecCC-----------------CHHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 193 IRGFGPLLPGHLKVDFG-----------------DITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-----------------d~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
+..+.+..+++..+|++ |++++++++++ .++++++||+||+++++|.+.|+++|+++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~l 236 (433)
T PRK08117 157 RKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREI 236 (433)
T ss_pred cccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHH
Confidence 55566666666555553 45678888764 235799999999999999999999999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHH
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAV 333 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aa 333 (470)
|++||++||+||||+|||++|++++.+++++.||+++|||++++|+ |+|++++++++++.+....+++||++||+++++
T Consensus 237 c~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G~-pigav~~~~~i~~~~~~~~~~~T~~~np~~~aa 315 (433)
T PRK08117 237 CDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASGL-PLSAVVASKELMEQWPLGSHGTTFGGNPVACAA 315 (433)
T ss_pred HHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCCC-cceeEEEcHHHHhhccCCCCCCCCCcCHHHHHH
Confidence 9999999999999999999999988888999999999999999997 999999999999988777888999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---chhHHHHHHHHHHcCceec
Q 012138 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKMKERGILAK 410 (470)
Q Consensus 334 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~Gv~~~ 410 (470)
+.++|+.++++++.++++++++++++.|+++..++| .+..+++.|+++++++..+.. ......+.+.|+++||++.
T Consensus 316 a~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 394 (433)
T PRK08117 316 ALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHP-VIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFY 394 (433)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-ceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEe
Confidence 999999998888999999999999999999987776 777899999999999864320 1245678899999999987
Q ss_pred cCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 411 PTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 411 ~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+ .+++||+||+.+|+++|++++++|.++++ ++
T Consensus 395 ~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~-~~ 430 (433)
T PRK08117 395 LCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALT-EY 430 (433)
T ss_pred ecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH-HH
Confidence 543 58999999999999999999999999998 76
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=487.67 Aligned_cols=404 Identities=33% Similarity=0.596 Sum_probs=347.2
Q ss_pred CCCCCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 33 SPSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
..+.+++++++++.+++....+. ..|+++++++|+|+||.|||+||||.+++++.++||+||+|.+++.++++++.+..
T Consensus 11 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~ 90 (451)
T PRK06918 11 QIPGPKAASLLERRQNIVPKGVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTG 90 (451)
T ss_pred cCCCCCHHHHHHHHHHhhccccccCCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCcc
Confidence 34457788999998888877653 45899999999999999999999999999999999999999999999999876543
Q ss_pred C-CCCCCcHHHHHHHHhhhhC--C-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R-AFYNDKFPVFAERLTSMFG--Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~-~~~~~~~~~l~~~l~~~~~--~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. .+.++...+++++|++..+ . ++++|++||+||++.|+|+++.| .++..||.+.++|||++.++++++
T Consensus 91 ~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~ls~~ 162 (451)
T PRK06918 91 FNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKY--------TKRQGIISFSRGFHGRTLMTMTMT 162 (451)
T ss_pred ccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHH--------hCCCcEEEECCCcCccchhhhhhc
Confidence 2 3567888999999999874 3 69999999999999999999986 366789999999999999999887
Q ss_pred CC-cccccCCCCCCCCeeeecCCC-----------------HHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhH
Q 012138 188 CD-NEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~~~~~d-----------------~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+. ..++..|.++.+++..+|+++ ++.+++.+.. .++++++||+||+++.+|.++|+++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l 242 (451)
T PRK06918 163 SKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFV 242 (451)
T ss_pred CCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHH
Confidence 74 345666777777666665542 1235554432 235899999999999999999899999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 327 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~ 327 (470)
++|+++|++||++||+||||+||+|+|.+++++++++.||+++|||++++|+ |+|++++++++++.+....+++||+++
T Consensus 243 ~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~-pig~v~~~~~i~~~~~~~~~~~T~~g~ 321 (451)
T PRK06918 243 QEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMDESAPGELGGTYAGS 321 (451)
T ss_pred HHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCC-ccEEEEEcHHHHhccCCCCcCcCCCcC
Confidence 9999999999999999999999999998888888999999999999999997 999999999999998877888999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC---C--chhHHHHHHHH
Q 012138 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA---L--PVSAYDICLKM 402 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~---~--~~~~~~~~~~l 402 (470)
+++++++.++|+.++++++.+++++++++++++|+++...+| .+..+++.|+++.|++..+. . ......+.+.|
T Consensus 322 ~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~-~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 400 (451)
T PRK06918 322 PLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYN-CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEA 400 (451)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCC-CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHH
Confidence 999999999999998889999999999999999999877775 67889999999999884221 0 12356788888
Q ss_pred HHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 403 KERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 403 ~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+++||++.+++ ++++||+||+.+|+++|++++++|++++. ++.+
T Consensus 401 ~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~-~~~~ 446 (451)
T PRK06918 401 NKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQ-ACYE 446 (451)
T ss_pred HHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH-HHHH
Confidence 99999998764 48999999999999999999999999998 7643
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=485.23 Aligned_cols=384 Identities=31% Similarity=0.512 Sum_probs=332.6
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC--C
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--Y 132 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~ 132 (470)
+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+... .+.++...+++++|++..+ .
T Consensus 23 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~ 102 (423)
T PRK05964 23 PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL 102 (423)
T ss_pred CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCC
Confidence 368999999999999999999999999999999999999999999999998765443 3567888999999999874 6
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeee--cCCC
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV--DFGD 210 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d 210 (470)
++++|++||+||++.|+|+++.|+... + .+++.+||++.++|||++.+++++++.+.++..+.+..++...+ |++|
T Consensus 103 ~~v~f~~sGseA~e~A~klar~~~~~~-~-~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d 180 (423)
T PRK05964 103 DHVFFSDSGSVAVEVALKMALQYWRNR-G-EPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDG 180 (423)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhc-C-CCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcch
Confidence 899999999999999999999864322 1 13677999999999999999999887766555566655554444 4456
Q ss_pred -----HHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC
Q 012138 211 -----ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 211 -----~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
++++++++.++++++++||+|| +++.+|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++++
T Consensus 181 ~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v 260 (423)
T PRK05964 181 YEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGV 260 (423)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCC
Confidence 8889999986667899999999 7999999999999999999999999999999999999999999988899999
Q ss_pred CcceeeccccccCCCcceeEEEecHHHHhhcCcC------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012138 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 358 (470)
Q Consensus 285 ~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 358 (470)
.||++++||+++||++|+|++++++++++.+... .+++||++||++++++.++|+.++++++.+++++++++++
T Consensus 261 ~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~ 340 (423)
T PRK05964 261 SPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLA 340 (423)
T ss_pred CCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999998855999999999999987532 4778999999999999999999988889999999999999
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+.|+++.. +| .+..+++.|+++.+++..+........+.+.|.++||++.+. .+.+||+||+.+|++||++++++|+
T Consensus 341 ~~l~~l~~-~~-~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~-~~~lR~~p~l~~t~edId~~v~~l~ 417 (423)
T PRK05964 341 EGLEPFRD-LP-GVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL-GNTIYLMPPYIITAEELDRITDAIV 417 (423)
T ss_pred HHHHhhcc-CC-CeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec-CCEEEEeCCcccCHHHHHHHHHHHH
Confidence 99998843 54 677889999999998864320013668999999999999875 4789999999999999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ |+
T Consensus 418 ~al~-~~ 423 (423)
T PRK05964 418 EVAD-EL 423 (423)
T ss_pred HHHh-hC
Confidence 9998 64
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-61 Score=483.04 Aligned_cols=378 Identities=33% Similarity=0.562 Sum_probs=330.7
Q ss_pred CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC--
Q 012138 55 HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG-- 131 (470)
Q Consensus 55 ~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-- 131 (470)
.++|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+... .+.++...+++++|.+..+
T Consensus 13 ~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~ 92 (420)
T TIGR00700 13 VTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS 92 (420)
T ss_pred CCCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC
Confidence 4679999999999999999999999999999999999999999999999998765443 2456678899999998873
Q ss_pred -CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-ccccCCCCCCCCeeeecCC
Q 012138 132 -YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 132 -~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 209 (470)
.++++|++||+||++.|+|+++.+ .|+..||++.++|||++.+++++++.. .++..|.++.+++..++++
T Consensus 93 ~~~~v~f~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (420)
T TIGR00700 93 GPKKSVFFNSGAEAVENAVKIARSY--------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLP 164 (420)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHh--------cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCC
Confidence 478999999999999999999986 356689999999999999999887753 3566677776666555553
Q ss_pred ----------------CHHHHHHHHH--hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 210 ----------------DITALEKIFK--ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 210 ----------------d~~~Le~~l~--~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
+++.+++++. ..++++++||+||+++.+|.++|+++|+++|+++|++||++||+||||+||+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~g 244 (420)
T TIGR00700 165 YPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFA 244 (420)
T ss_pred ccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 2567777774 2346899999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA 351 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~ 351 (470)
|+|.+++++++++.||+++|||++++|+ |+|++++++++++.+....+++||++||++|+++.++|+.++++++.++++
T Consensus 245 r~g~~~a~~~~~~~pDi~~lsK~l~~G~-pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~ 323 (420)
T TIGR00700 245 RTGAMFACEHEGPEPDLITTAKSLADGL-PLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERAR 323 (420)
T ss_pred ccchhHHHhhcCCCCCEEEeeccccCCc-ceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999888899999999999999999998 999999999999998877889999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----chhHHHHHHHHHHcCceeccCC--CCEEEEecCCCC
Q 012138 352 HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSI 425 (470)
Q Consensus 352 ~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~ 425 (470)
++++++++.|+++...+| .+..+++.|+|+++++..+.. ......+.+.|+++||++.|++ ++++||+||+.+
T Consensus 324 ~~g~~l~~~L~~l~~~~~-~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~ 402 (420)
T TIGR00700 324 QIGRLVTDRLTTLKAVDP-RIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTI 402 (420)
T ss_pred HHHHHHHHHHHHHHhhCC-CEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCc
Confidence 999999999999987775 678899999999998843210 1235677788889999998864 589999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012138 426 SSNELQEGSKALHDVLE 442 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~ 442 (470)
+++++++++++|.++++
T Consensus 403 ~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 403 GDELLSEGLDILCAILA 419 (420)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999999885
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=477.08 Aligned_cols=398 Identities=24% Similarity=0.333 Sum_probs=323.8
Q ss_pred CCCCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHH--HHHcccc
Q 012138 33 SPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQ--AEKLTLS 110 (470)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~--~~~~~~~ 110 (470)
..+.+++++++++..++......++|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++ ...+.+.
T Consensus 16 ~~~~~~s~~l~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~ 95 (464)
T TIGR00699 16 EIPGPKSKAAMKQLNEVFDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINR 95 (464)
T ss_pred CCCCccHHHHHHHHHhhhcccCcccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhccc
Confidence 34456788899988887633223679999999999999999999999999999999999999999999985 4444333
Q ss_pred CCCCCCCcHHHHHHHHhh----hh--CCCeEEecCChhHHHHHHHHHHHHhchhc-cc----------------CCCC--
Q 012138 111 SRAFYNDKFPVFAERLTS----MF--GYDMVLPMNTGAEGVETALKLARKWGYVK-KK----------------FSID-- 165 (470)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~----~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~-~~----------------~~~g-- 165 (470)
+ .+.++...+++++|.+ .. +.++|+|+|||+||++.|+|+++.|+... ++ .++|
T Consensus 96 ~-~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~ 174 (464)
T TIGR00699 96 P-ALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSP 174 (464)
T ss_pred c-cCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCc
Confidence 3 2556677888888754 44 35799999999999999999999864221 11 0122
Q ss_pred CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-------------------CCHHHHHHHHHhcCCCeE
Q 012138 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-------------------GDITALEKIFKESGDQIA 226 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~~~Le~~l~~~~~~~~ 226 (470)
+.+||++.++|||++.+++++++.+..+....+ .+++..+|+ +++++|++++++++++++
T Consensus 175 r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~-~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iA 253 (464)
T TIGR00699 175 DLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIP-AFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVA 253 (464)
T ss_pred CCEEEEECCCcCCccHHHHHhcCCccccccCCC-CCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEE
Confidence 238999999999999999998876433322211 112222221 246778888876666899
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC--cceeecccccc-CCCccee
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~--pdi~s~sK~l~-gG~~~ig 303 (470)
+||+||+++.+|.+.|+++|+++|+++|++||++||+||||+||||+|.+|+++++|+. ||++++||+++ ||+ .
T Consensus 254 AvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~-~-- 330 (464)
T TIGR00699 254 AIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGY-F-- 330 (464)
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCc-c--
Confidence 99999999999999999999999999999999999999999999999999999999997 99999999995 686 2
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--cccee
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~ 381 (470)
+.++ .........+++||++||++|+++.++|+.++++++.+++++++++|++.|+++..++|..+.+++ +.|+|
T Consensus 331 --~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm 407 (464)
T TIGR00699 331 --FHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTF 407 (464)
T ss_pred --ccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEE
Confidence 2332 222223446889999999999999999999999999999999999999999999887764688999 99999
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+.+++.... ....+.+.|+++||++.+.+.+.+||.||+.+|++||++++++|.+++
T Consensus 408 ~gie~~~~~---~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 408 IAWDTPDEA---KRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred EEEecCCHH---HHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999885432 467899999999999988767899999999999999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-60 Score=474.27 Aligned_cols=380 Identities=39% Similarity=0.677 Sum_probs=337.3
Q ss_pred CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC
Q 012138 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 133 (470)
Q Consensus 54 ~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 133 (470)
+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+....+.++...+++++|++..+.+
T Consensus 10 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 89 (389)
T PRK01278 10 YNRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSFAD 89 (389)
T ss_pred cCCCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCCCC
Confidence 44678999999999999999999999999999999999999999999999998665544456788899999999988888
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHH
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 213 (470)
++++++||++|++.|+++++.+... +| .+++..||+++++|||++..++.+++.+.+...+.+..+++..++|+|+++
T Consensus 90 ~v~~~~sGseA~~~al~~ar~~~~~-~G-~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 167 (389)
T PRK01278 90 KVFFTNSGAEAVECAIKTARRYHYG-KG-HPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEA 167 (389)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHHHh-cC-CCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHH
Confidence 9999999999999999999875322 11 124568999999999999999988887666666666666777889999999
Q ss_pred HHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccc
Q 012138 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK 293 (470)
Q Consensus 214 Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK 293 (470)
+++++++ ++++|++||++|++|.+.++++++++|+++|++||++||+||+|+|||++|++++++++++.||+++|||
T Consensus 168 l~~~l~~---~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK 244 (389)
T PRK01278 168 LKAAITP---NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAK 244 (389)
T ss_pred HHHhhCC---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEeh
Confidence 9999975 8999999999999996666999999999999999999999999999999999887788899999999999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
++++|+ |+|++++++++++.+....+++||++|+++++++.++|+.++++++.+++++++++++++|+++...+|..+.
T Consensus 245 ~l~~G~-~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 323 (389)
T PRK01278 245 GIGGGF-PLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIE 323 (389)
T ss_pred hccCCc-ceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence 999998 9999999999999998878889999999999999999999987788999999999999999998766654677
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+++.|.++++++.. ++.+++++|+++||++.|++.+++||+||+.+++++|++++++|+++++ ++
T Consensus 324 ~v~g~G~~~~i~~~~-----~~~~~~~~l~~~GV~~~p~~~~~lR~~p~~~~~~~~i~~~l~~l~~~l~-~~ 389 (389)
T PRK01278 324 EVRGKGLLLGLKCVV-----PNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAE-SL 389 (389)
T ss_pred eEecccEEEEEEEec-----CHHHHHHHHHHCCeEEeecCCCEEEEeCCcccCHHHHHHHHHHHHHHHH-hC
Confidence 889999999987743 4678999999999999998889999999999999999999999999987 53
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=474.58 Aligned_cols=400 Identities=60% Similarity=1.033 Sum_probs=352.3
Q ss_pred HHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcH
Q 012138 40 QQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 119 (470)
+++++..++|....+.+.|+++.+++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+.+..+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 81 (401)
T TIGR01885 2 EEAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVF 81 (401)
T ss_pred hhHHHHHHHhhhcccCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHH
Confidence 56777777777777777889999999999999999999999999999999999999999999999987766554567888
Q ss_pred HHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC
Q 012138 120 PVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL 199 (470)
Q Consensus 120 ~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 199 (470)
.+++++|+++++.+++++++||++|++.|+++++.+++.+++.++++..|+++..+|||++.+++++++.+.+...+.+.
T Consensus 82 ~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 161 (401)
T TIGR01885 82 GEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPY 161 (401)
T ss_pred HHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCC
Confidence 99999999999989999999999999999999998755444445567899999999999999999998776666666766
Q ss_pred CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc
Q 012138 200 LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS 279 (470)
Q Consensus 200 ~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~ 279 (470)
.++...++|+|+++||+++++.++++++|++||+++++|.+.|+.+|+++|+++|++||+++|+||+|+|||++|++++.
T Consensus 162 ~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~ 241 (401)
T TIGR01885 162 VPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCV 241 (401)
T ss_pred CCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHH
Confidence 67788899999999999998665689999999999999999988899999999999999999999999999999998877
Q ss_pred ccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012138 280 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359 (470)
Q Consensus 280 ~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~ 359 (470)
+++++.||++++||++++|.+|+|++++++++++.+....+.+||+++|++++++.++|+.++++++.++++++++++++
T Consensus 242 ~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~ 321 (401)
T TIGR01885 242 DHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRD 321 (401)
T ss_pred hhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77888999999999999774499999999999998876667789999999999999999999887888999999999999
Q ss_pred HHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.|+++.. +.+..+++.|+|+.+.++.+..+..+.+++++|.++||++.|..++.+||+|++.+|+++|++++++|++
T Consensus 322 ~L~~l~~---~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l~~t~~~i~~~l~~l~~ 398 (401)
T TIGR01885 322 QLKKLPK---PIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKK 398 (401)
T ss_pred HHHhccC---CceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 9998742 2567788999999998865421125688999999999999988889999999999999999999999998
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 399 ~l~ 401 (401)
T TIGR01885 399 VID 401 (401)
T ss_pred HhC
Confidence 864
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-60 Score=473.72 Aligned_cols=392 Identities=29% Similarity=0.467 Sum_probs=334.2
Q ss_pred CchHHHHHHHhhhcccC-------CC----CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHN-------YH----PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~~----~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~ 105 (470)
++|.++.++.++++... +. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++
T Consensus 4 ~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~ 83 (428)
T PRK12389 4 TKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE 83 (428)
T ss_pred hhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHH
Confidence 46788888888876432 21 46899999999999999999999999999999999999999999999999
Q ss_pred HccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh
Q 012138 106 KLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~ 184 (470)
++.+. .+.++...+++++|.+.. +.++++|++||+||++.|+|+++.| .|+..||.+.++|||++.+++
T Consensus 84 ~~~~~--~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~--------tgr~~ii~~~~~yHG~t~~~~ 153 (428)
T PRK12389 84 NGVLY--GTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAY--------TGRTKIIKFAGCYHGHSDLVL 153 (428)
T ss_pred hCCcc--CCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHh--------hCCCEEEEECCCcCCChHHHH
Confidence 86543 356788899999999877 4689999999999999999999986 367799999999999999998
Q ss_pred cccCCcccc------cCCC-CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc
Q 012138 185 SMSCDNEAI------RGFG-PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 257 (470)
Q Consensus 185 ~~~~~~~~~------~~~~-~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~ 257 (470)
+.++....+ ..+. +..+++..+|++|+++++++++++++++++||+||+++.+|.+.|+++|+++|+++|++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~ 233 (428)
T PRK12389 154 VAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEA 233 (428)
T ss_pred HhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 887643221 1122 223567888999999999999876678999999999999999999999999999999999
Q ss_pred CcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHHH
Q 012138 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVA 334 (470)
Q Consensus 258 gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa 334 (470)
|++||+||||+|| |+|.+++++++++.||+++++|+++||+ |+|++++++++++.+.+ ..+++||++||++|+++
T Consensus 234 g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG~-Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaa 311 (428)
T PRK12389 234 GALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGGL-PIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAG 311 (428)
T ss_pred CCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCCC-ceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHH
Confidence 9999999999999 9988888888999999999999999997 99999999999998853 35788999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCC----------chhHHHHHHHHH
Q 012138 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTAL----------PVSAYDICLKMK 403 (470)
Q Consensus 335 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~ 403 (470)
.++|+.++++++.+++++++++|++.|+++..++| .+..+ ++.| ++.+++..+.. ......+.+.|+
T Consensus 312 la~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 389 (428)
T PRK12389 312 IACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHG-ITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAFGKFFKLML 389 (428)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHHHHHHHHHH
Confidence 99999999888999999999999999999988776 55555 6677 67777754220 012467888999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++||++.+.+.+. +.||+.+|++||++++++++++++ ++
T Consensus 390 ~~Gv~~~~~~~~~--~~~~l~~t~e~id~~~~~l~~~l~-~~ 428 (428)
T PRK12389 390 NQGINLAPSKYEA--WFLTTAHTEEDIEETLEAVDRAFA-QL 428 (428)
T ss_pred HCCcEeecCCCCC--eeecCCCCHHHHHHHHHHHHHHHH-hC
Confidence 9999998764444 357899999999999999999997 53
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=469.87 Aligned_cols=398 Identities=50% Similarity=0.847 Sum_probs=350.8
Q ss_pred CchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC
Q 012138 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 116 (470)
..++++++....+....+.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++++.+.+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~ 82 (401)
T PRK00854 3 NTSEDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRN 82 (401)
T ss_pred CCCHHHHHHHhhhhhcccCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCC
Confidence 34677887776666666777899999999999999999999999999999999999999999999999998776655667
Q ss_pred CcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+...+++++|+++.+.+++++++||++|++.|+++++.++...+|.+++++.||++..+|||++..++.++.++..+..+
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~ 162 (401)
T PRK00854 83 DQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGF 162 (401)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccC
Confidence 78899999999999889999999999999999999998654445555666789999999999999888888776666667
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.+..+++..++|+|+++|++++.+ ++++|++||++||+|.+.|+++|+++|+++|++||++||+||+|+|+|++|.+
T Consensus 163 ~~~~~~~~~~~~~d~~~le~~i~~---~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~ 239 (401)
T PRK00854 163 GPFTPGFRVVPFGDAEALEAAITP---NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKL 239 (401)
T ss_pred CCCCCCeEEeCCCCHHHHHHHhCC---CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchH
Confidence 777788889999999999999975 79999999999999999988999999999999999999999999999999987
Q ss_pred cccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~ 356 (470)
++.+++++.||++++||++++|++|+|++++++++++.+....++.+|+++++.++++.++|+.++++++.+++++++++
T Consensus 240 ~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~ 319 (401)
T PRK00854 240 LAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAY 319 (401)
T ss_pred hHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 77777899999999999999885599999999999999887778889999999999999999998877789999999999
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
+.+.|+++... .+..+++.|.++.+.+..+. ....++++.|+++||++.+...+++||+|++.+|+++|++++++
T Consensus 320 l~~~L~~~~~~---~~~~~~g~g~~~~i~~~~~~--~~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~ 394 (401)
T PRK00854 320 FLEGLRSIRSN---IVREVRGRGLMLAVELEPEA--GGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQ 394 (401)
T ss_pred HHHHHHhhccC---ceEEEeccceEEEEEEecCc--hhHHHHHHHHHHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHH
Confidence 99999887432 35567899999998774432 25678999999999999877678999999999999999999999
Q ss_pred HHHHHh
Q 012138 437 LHDVLE 442 (470)
Q Consensus 437 l~~~l~ 442 (470)
|++++.
T Consensus 395 l~~~l~ 400 (401)
T PRK00854 395 IAKVLA 400 (401)
T ss_pred HHHHhh
Confidence 999875
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-59 Score=468.14 Aligned_cols=394 Identities=24% Similarity=0.385 Sum_probs=324.0
Q ss_pred CCchHHHHHHHhhhcccC-------CC---CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 012138 36 SSSSQQLINLEYEYSAHN-------YH---PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~---~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~ 105 (470)
.++|++++++.++++... +. +.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++
T Consensus 50 ~~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~ 129 (474)
T PLN02482 50 TTKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMK 129 (474)
T ss_pred ChHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHh
Confidence 457899999999987432 22 45899999999999999999999999999999999999999999999999
Q ss_pred HccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh
Q 012138 106 KLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~ 184 (470)
++... ...++...+++++|++.. +.++++|+|||+||++.|+|+++.+ +|+.+||.+.++|||++....
T Consensus 130 ~~~~~--~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~--------tgr~~Ii~~~g~YHG~~~~~~ 199 (474)
T PLN02482 130 KGTSF--GAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAY--------TGREKIIKFEGCYHGHADSFL 199 (474)
T ss_pred hCCCC--CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh--------cCCCEEEEECCccCCCcchhh
Confidence 87643 345677889999999887 4789999999999999999999986 367799999999999874432
Q ss_pred cc--cCCcccccCCCCC-----CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc
Q 012138 185 SM--SCDNEAIRGFGPL-----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 257 (470)
Q Consensus 185 ~~--~~~~~~~~~~~~~-----~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~ 257 (470)
.. ++......+..+. .+++..+||||+++|+++++++++++++||+||+++.+|.+.|+++|+++|+++|++|
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~ 279 (474)
T PLN02482 200 VKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKEN 279 (474)
T ss_pred hhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 22 2111111111111 1246788999999999999876678999999999999999999999999999999999
Q ss_pred CcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHHH
Q 012138 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVA 334 (470)
Q Consensus 258 gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa 334 (470)
|++||+||||+|| |+|.+++.+++++.||+++|+|+++||+ |+|++++++++++.+.+ ..+++||++||++++++
T Consensus 280 g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lggG~-Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAa 357 (474)
T PLN02482 280 GALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGGL-PVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (474)
T ss_pred CCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhCCC-ceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHH
Confidence 9999999999999 9998888899999999999999999997 99999999999998863 35788999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHH
Q 012138 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKE 404 (470)
Q Consensus 335 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~ 404 (470)
.++|+.++++++.+++++++++|+++|+++..+++ ....+...+.++.+++..+.. ......+.+.|++
T Consensus 358 la~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g-~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~ 436 (474)
T PLN02482 358 IHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAG-HEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLE 436 (474)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHH
Confidence 99999998888999999999999999999877643 111112323366776643210 1124578889999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+||++.+..... + .||+.+|++||+++++++++++. ++
T Consensus 437 ~Gv~~~~~~~~~-~-~psl~ht~~dId~~l~al~~~l~-~~ 474 (474)
T PLN02482 437 EGVYLAPSQFEA-G-FTSLAHTEEDIDFTIAAAERVLA-RI 474 (474)
T ss_pred CCeEEeccCCCC-C-cCCCCCCHHHHHHHHHHHHHHHH-hC
Confidence 999998753322 2 38899999999999999999987 53
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=442.02 Aligned_cols=394 Identities=27% Similarity=0.432 Sum_probs=332.6
Q ss_pred CchHHHHHHHhhhcccC-------CCC---CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHN-------YHP---VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~~~---~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
++|+++.++.++++... +.+ .|+++++++|+++||+||++||||..+|++..+||+||.|.+|+.+++++
T Consensus 5 ~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~ 84 (432)
T COG0001 5 PKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLER 84 (432)
T ss_pred cchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHh
Confidence 56899999999987532 222 79999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhhCC-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMFGY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~~~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
.... ..+++...++++.+.++++. ++|-|+||||||++.|++++|.+ .|+++|+.|+++|||+....+.
T Consensus 85 G~~f--g~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~--------TgR~kIikF~G~YHG~~D~~lv 154 (432)
T COG0001 85 GLSF--GAPTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAY--------TGRDKIIKFEGCYHGHSDSLLV 154 (432)
T ss_pred cCCC--CCCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHh--------hCCCeEEEEcCCCCCCccHHHh
Confidence 7533 24677788999999999875 99999999999999999999986 3788999999999999877654
Q ss_pred ccCCc--ccccCCCC-----CCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDN--EAIRGFGP-----LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~--~~~~~~~~-----~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
-.+.. ....+-.+ ....+..+||||++++++++++.++++++||+||+.+..|.+.|.++|+++|+++|++||
T Consensus 155 ~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G 234 (432)
T COG0001 155 KAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHG 234 (432)
T ss_pred hcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 32211 01101111 112378999999999999999988999999999999999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~ 335 (470)
++||.|||.+|| |.....+.+.+++.||+.+|+|.++||+ |+|++.+++++|+.+.+. .+.+|+++||++++|+.
T Consensus 235 ~lLI~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGGl-P~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~ 312 (432)
T COG0001 235 ALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGL 312 (432)
T ss_pred cEEEEecchhhc-ccCCcccccccCcCcchhhhhhhhcCCc-ceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHH
Confidence 999999999999 6665667889999999999999999999 999999999999987653 57889999999999999
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHH
Q 012138 336 ASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKE 404 (470)
Q Consensus 336 a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~ 404 (470)
++|+.+.+ +...+++.+++++|++.|++...++. ....+...|.++.+.+..... ......+...|++
T Consensus 313 atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g-~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~ 391 (432)
T COG0001 313 ATLEELMTEEGVYERLDALGERLAEGLRAAAERHG-IPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLN 391 (432)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHh
Confidence 99999987 55899999999999999999887763 455677888888887765321 1123456668999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+||++.|..-...=+| ..||+++|++.+++++++++ ++.
T Consensus 392 ~GV~l~ps~~ea~flS--~ahte~di~~~~~a~~~~~~-~~~ 430 (432)
T COG0001 392 RGVYLAPSQFEAGFLS--TAHTEEDIDRTLEAADEAFK-ELA 430 (432)
T ss_pred CCcccCCccccceeee--cccCHHHHHHHHHHHHHHHH-Hhh
Confidence 9999999864444455 78999999999999999998 654
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=464.12 Aligned_cols=385 Identities=34% Similarity=0.577 Sum_probs=336.3
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 131 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 131 (470)
..+.+.|+++.+++|+++||.||++||||.+++++.++||+||+|.+++.++++++......+.++...+++++|+++.+
T Consensus 17 ~~~~~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 96 (403)
T PRK05093 17 PNYAPAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF 96 (403)
T ss_pred hhcCCCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC
Confidence 33567899999999999999999999999999999999999999999999999876544333456677899999999888
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCH
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI 211 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (470)
.++++|++||++|++.|+++++.++...++ .++..||+++.+|||++..++++++.+.+...+.+...++..++|||+
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~--~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHG--PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDL 174 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCC--CCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCH
Confidence 889999999999999999999886432211 356789999999999999888887766555666666667889999999
Q ss_pred HHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec
Q 012138 212 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291 (470)
Q Consensus 212 ~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~ 291 (470)
+++++.+.+ ++++|++||+++++|.+.|+++++++|+++|++||+++|+||+|+||+++|++++++++++.||+.+|
T Consensus 175 ~~l~~~l~~---~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~ 251 (403)
T PRK05093 175 AAVKAVIDD---HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTS 251 (403)
T ss_pred HHHHHHhcC---CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEe
Confidence 999999864 79999999988888988789999999999999999999999999999999988777788999999999
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
||++++|+ |+|++++++++++.+....+..+++++++.++++.++|+.+.++++.++++++++++.+.|+++...++ .
T Consensus 252 sK~l~~G~-rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~ 329 (403)
T PRK05093 252 AKALGGGF-PIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYG-V 329 (403)
T ss_pred cccccCCc-ceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCC-C
Confidence 99999998 999999999999999876778899999999999999999988788999999999999999999876554 5
Q ss_pred eEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 372 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+..+++.|.++++.++... .....++++.|+++||++.+.+.+++||+|++.+++++|++++++|.+++. ++
T Consensus 330 ~~~~~~~G~~~~~~l~~~~-~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~-~~ 401 (403)
T PRK05093 330 FSEIRGMGLLIGAELKPQY-KGRARDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVA-KV 401 (403)
T ss_pred eEeEeeCceEEEEEecCcc-hhHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 6678889999999875421 014678999999999999987778999999999999999999999999987 53
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=470.26 Aligned_cols=396 Identities=26% Similarity=0.433 Sum_probs=320.1
Q ss_pred HHHHHHhhhcccCCCCCceEEEeecCCEEEeC-CCCeEEeccCCcccccCCCCCHHHHH--HHHHHHHHccc--cC-CCC
Q 012138 41 QLINLEYEYSAHNYHPVPIVFSQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIMK--ALQEQAEKLTL--SS-RAF 114 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~-~G~~~lD~~~~~~~~~lG~~~p~v~~--a~~~~~~~~~~--~~-~~~ 114 (470)
++.+...++....-.|+++++++++|+|+||. ||++||||.+++++.++||+||+|.+ ++.+|++++.+ .. ..+
T Consensus 10 ~~~~~~~~~~~~~~~p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~ 89 (443)
T PRK08297 10 DVHEVLARHILVDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDV 89 (443)
T ss_pred chhHHHHHHHhhcCCCcceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCc
Confidence 34444444443332355666899999999995 99999999999999999999999999 99999987653 22 235
Q ss_pred CCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchh---cccC-CCCCcEEEEEccCccccccchhccc
Q 012138 115 YNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYV---KKKF-SIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~---~~~~-~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
.++...+++++|+++. +.++|+|+|||+||++.|+|+++.|+.. .+|. ++++.+||++.++|||++.++++++
T Consensus 90 ~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~ 169 (443)
T PRK08297 90 YTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLT 169 (443)
T ss_pred CCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhc
Confidence 6778889999998876 3579999999999999999999986421 1233 1346789999999999999999988
Q ss_pred CCcccccCCCCCC-------CCe------------eeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 188 CDNEAIRGFGPLL-------PGH------------LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 188 ~~~~~~~~~~~~~-------~~~------------~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
+.+.....+.+.. +.. ..+++++++++++++.++++++++||+||+++.+|.+.|+++|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~ 249 (443)
T PRK08297 170 NTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFA 249 (443)
T ss_pred CCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHH
Confidence 6432222211111 111 011122456778888776679999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhh----cC-cCCccCC
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC----IQ-PGEHGST 323 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~----~~-~~~~~~t 323 (470)
+|+++|++||++||+||||+||||+|++|+++++++.||+++|||++. +|+++..+++.+. +. ...+++|
T Consensus 250 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~-----~~a~l~~~~i~~~~~~~~~~~~~~~~T 324 (443)
T PRK08297 250 AMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINST 324 (443)
T ss_pred HHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccccc-----ccceecchHHHHhhhhhccCccccCCC
Confidence 999999999999999999999999999999999999999999999974 3345555554332 21 2358899
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH
Q 012138 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
|++||++|+++.++|+.++++++.++++++++++++.|+++..++|.....+++.|+|+.+++.... ....+++.|+
T Consensus 325 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~---~~~~~~~~l~ 401 (443)
T PRK08297 325 WGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTA---DRDEVIRRLW 401 (443)
T ss_pred CCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHH---HHHHHHHHHH
Confidence 9999999999999999999889999999999999999999988876333489999999999986432 5678999999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++||++.|.+.+.+||+||+.+|++||++++++|.+++. ++
T Consensus 402 ~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~-~~ 442 (443)
T PRK08297 402 EEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALP-EV 442 (443)
T ss_pred HCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHH-hh
Confidence 999999987778999999999999999999999999998 64
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=460.86 Aligned_cols=387 Identities=36% Similarity=0.615 Sum_probs=340.0
Q ss_pred hHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCc
Q 012138 39 SQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDK 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 118 (470)
.++..+...++....+.+.|+++++++|+++||.||++||||.+++++.++||+||++.+++.+++++..+....+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~ 86 (398)
T PRK03244 7 TAELLQRWQAVMMNNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEP 86 (398)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHH
Confidence 34455555555555566678999999999999999999999999999999999999999999999998765444456667
Q ss_pred HHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccC
Q 012138 119 FPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 195 (470)
Q Consensus 119 ~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 195 (470)
..+++++|++.++. +++++++||++|++.|+++++. ++++.||.++++|||++..++.+++.......
T Consensus 87 ~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~---------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 157 (398)
T PRK03244 87 QIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL---------TGRTKIVAAEGGFHGRTMGALALTGQPAKRAP 157 (398)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH---------HCCCeEEEECCCcCCccHHHHhccCCcccccC
Confidence 78999999998763 5899999999999999998887 35668889999999999999888776555566
Q ss_pred CCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC
Q 012138 196 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 275 (470)
Q Consensus 196 ~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~ 275 (470)
+.+..+++..+|++|++++++++.+ ++++|++||++||+|.++|+++|+++|+++|++||++||+||+|+|||++|+
T Consensus 158 ~~~~~~~~~~~~~~d~~~l~~~~~~---~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~ 234 (398)
T PRK03244 158 FEPLPGGVEHVPYGDVDALAAAVDD---DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA 234 (398)
T ss_pred CCCCCCCceEeCCCCHHHHHHhhcC---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch
Confidence 6666667788899999999998854 7999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012138 276 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 355 (470)
Q Consensus 276 ~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~ 355 (470)
+++++++++.||+++|||++++|+ |+|++++++++++.+....+.++|++++++++++.++|+.++++++.++++++++
T Consensus 235 ~~~~~~~~~~pDi~t~sK~l~~G~-~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~ 313 (398)
T PRK03244 235 WFAHQHDGVTPDVVTLAKGLGGGL-PIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGE 313 (398)
T ss_pred HHhhhhhCCCCCEEEEchhhhCCc-ccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 877788899999999999999997 9999999999999988777889999999999999999999888889999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
++++.|+++. +| .+..+++.|.+++++++.. .+..++++|+++||++.+...+++||+|++.+|++||+++++
T Consensus 314 ~l~~~L~~~~--~~-~~~~v~g~g~~~~i~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~~~i~~~~~ 386 (398)
T PRK03244 314 QLRAGIEALG--HP-LVDHVRGRGLLLGIVLTAP----VAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVA 386 (398)
T ss_pred HHHHHHHhcC--CC-ceeeEeeccEEEEEEEecc----HHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHH
Confidence 9999998863 33 5677889999999988532 567899999999999988777999999999999999999999
Q ss_pred HHHHHHhcccC
Q 012138 436 ALHDVLELDLP 446 (470)
Q Consensus 436 ~l~~~l~~~~~ 446 (470)
+|++++. +++
T Consensus 387 ~l~~~l~-~~~ 396 (398)
T PRK03244 387 ALPAILD-AAA 396 (398)
T ss_pred HHHHHHH-hcc
Confidence 9999998 654
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=460.10 Aligned_cols=396 Identities=30% Similarity=0.493 Sum_probs=331.7
Q ss_pred hHHHHHHHhhhcccCC----CCC-ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-
Q 012138 39 SQQLINLEYEYSAHNY----HPV-PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR- 112 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~----~~~-p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~- 112 (470)
.+++++.+.++.++.+ .+. ++.+++++|+++||.||++||||.+++++.++||+||+|.+++.++++++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~ 83 (427)
T TIGR00508 4 TASLLAFDQRHIWHPYTSMSSPLPVYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFG 83 (427)
T ss_pred hHHHHhccccccccCccCccccCCCceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccc
Confidence 4556665555544322 123 4668999999999999999999999999999999999999999999998765433
Q ss_pred CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 113 AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
.+.++...+++++|++..+ .++++|++||+||++.|+++++.++.. ++ .+++..||++.++|||.+..+.++++..
T Consensus 84 ~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~-~~-~~~r~~il~~~~~yHG~t~~~~s~~~~~ 161 (427)
T TIGR00508 84 GFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQA-KG-EKNRQKFLTIRSGYHGDTFGAMSVCDPE 161 (427)
T ss_pred ccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHh-hC-CCCccEEEEEcCCcCCccHhhhcccCCc
Confidence 3467778899999999874 579999999999999999999986422 11 1356789999999999999998887642
Q ss_pred -ccccCCCCCCCCeeeec---------C--CCHHHHHHHHHhcCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhc
Q 012138 191 -EAIRGFGPLLPGHLKVD---------F--GDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKY 257 (470)
Q Consensus 191 -~~~~~~~~~~~~~~~~~---------~--~d~~~Le~~l~~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~ 257 (470)
..+..|.+..++....+ + +|+++++++++.+++++++||+||+ ++.+|.+.++++|+++|+++|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~ 241 (427)
T TIGR00508 162 NSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY 241 (427)
T ss_pred ccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc
Confidence 23333444333322221 1 2577888888766668999999997 899999999999999999999999
Q ss_pred CcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC-----CccCCCCCCHHHHH
Q 012138 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFGGNPLASA 332 (470)
Q Consensus 258 gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~a 332 (470)
|++||+||||+|||++|++|+++++++.||++++||+++||++|++++++++++++.+... .+++||++||++++
T Consensus 242 ~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~a 321 (427)
T TIGR00508 242 DILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACA 321 (427)
T ss_pred CCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence 9999999999999999999999999999999999999999977999999999999988643 37789999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC
Q 012138 333 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 333 aa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
++.++|+.++++++.+++++++++|+++|+++.. +| .+..+++.|+++.+++..+. ....+.++|+++||++.+.
T Consensus 322 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~i~~vrg~G~~~~i~~~~~~---~~~~~~~~l~~~Gv~~~~~ 396 (427)
T TIGR00508 322 VAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-NP-VVKDVRVLGAIGVVEMYKPV---NVEELQKKFVEQGVWIRPF 396 (427)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-CC-CEEeEeccccEEEEEECCcc---CHHHHHHHHHHCCeEEEec
Confidence 9999999999888999999999999999999864 43 57789999999999986543 5678999999999999876
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 413 HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 413 ~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+||+||+++|++||++++++|+++++
T Consensus 397 -~~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 397 -GKLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999997
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-58 Score=456.96 Aligned_cols=392 Identities=27% Similarity=0.451 Sum_probs=328.6
Q ss_pred CCchHHHHHHHhhhcccC-------CC---CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 012138 36 SSSSQQLINLEYEYSAHN-------YH---PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~---~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~ 105 (470)
.+++.++.++.++++... +. +.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++
T Consensus 4 ~~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~ 83 (433)
T PRK00615 4 IQEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAE 83 (433)
T ss_pred cHHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHH
Confidence 356788888888876432 32 47899999999999999999999999999999999999999999999998
Q ss_pred HccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccc---
Q 012138 106 KLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT--- 180 (470)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~--- 180 (470)
+... ..+.++...+++++|.+..+. ++++|++||+||++.|+|+++.+ +|+..|+.+.++|||++
T Consensus 84 ~~~~--~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~--------tgr~~ii~~~~~yHG~td~~ 153 (433)
T PRK00615 84 RGTS--YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGI--------TGRSIIIKFLGCYHGHADTL 153 (433)
T ss_pred hCCC--CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh--------hCCCEEEEEcCccCCCCccc
Confidence 8653 235677789999999998753 69999999999999999999986 36779999999999988
Q ss_pred cchhcccCCccc--ccCC--CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 181 LAAISMSCDNEA--IRGF--GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 181 ~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
..++++++.... ...+ .+..+....++|||++++++++.++++++++||+||+++++|.+.|+++|+++|+++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~ 233 (433)
T PRK00615 154 LQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRR 233 (433)
T ss_pred CcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 666666543211 1111 122234567789999999999987666899999999999999999999999999999999
Q ss_pred cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHH
Q 012138 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAV 333 (470)
Q Consensus 257 ~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aa 333 (470)
||+++|+||||+|| |+|.+++++++++.||+++|||+++||+ |+|++++++++++.+.+. .+++||+++|++|++
T Consensus 234 ~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG~-p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa 311 (433)
T PRK00615 234 TGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGGL-PAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAA 311 (433)
T ss_pred cCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEcccccCCc-ceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHH
Confidence 99999999999999 8999888899999999999999999997 999999999999988532 367899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh--CCCceEEEeccceeEEEEeccCCC----------chhHHHHHHH
Q 012138 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ--FPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLK 401 (470)
Q Consensus 334 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~--~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~ 401 (470)
+.++|+.++++++.+++++++++|+++|+++..+ +| +..++ .|+++.+++..+.. ......+.+.
T Consensus 312 ~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~--v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (433)
T PRK00615 312 GKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFP--VSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQS 388 (433)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCC--eEEEe-eceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHH
Confidence 9999999988889999999999999999987665 33 66667 89999999964321 0124578899
Q ss_pred HHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 402 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 402 l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|.++||++.+...... .++..+|++||++++++++++++ ++
T Consensus 389 l~~~Gv~~~~~~~~~~--~ls~~ht~~did~~~~a~~~~~~-~~ 429 (433)
T PRK00615 389 AFSKGVYLSPSPFEAS--FLSSAHSMENLDYAQNVLIDSLE-KV 429 (433)
T ss_pred HHHCCeeecCcccccc--ceecCCCHHHHHHHHHHHHHHHH-HH
Confidence 9999999987643222 23478999999999999999998 65
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-58 Score=459.26 Aligned_cols=393 Identities=57% Similarity=1.007 Sum_probs=344.4
Q ss_pred hcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhh
Q 012138 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTS 128 (470)
Q Consensus 49 ~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 128 (470)
+....+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.++++.+.+.+..+.++...++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (400)
T PTZ00125 5 YGAHNYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITD 84 (400)
T ss_pred ccccccCCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHh
Confidence 44556677899999999999999999999999999999999999999999999999988776655556677889999999
Q ss_pred hhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC
Q 012138 129 MFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF 208 (470)
Q Consensus 129 ~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (470)
+.+.++++|++||++|++.|+++++.++.++++.+.+++.|++++.+|||++...+..+........+.+..++...+++
T Consensus 85 ~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (400)
T PTZ00125 85 LFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDY 164 (400)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCC
Confidence 88889999999999999999999987766666555566789999999999999998887765555556666667778899
Q ss_pred CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcce
Q 012138 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 288 (470)
Q Consensus 209 ~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi 288 (470)
+|+++||++++. +++++|++||++||+|.+.|+++|+++|.++|++||++||+||+|+|+|++|.++..+.+++.||+
T Consensus 165 ~d~~~le~~l~~--~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~ 242 (400)
T PTZ00125 165 NDVEALEKLLQD--PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDI 242 (400)
T ss_pred CCHHHHHHHhCC--CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCE
Confidence 999999999962 379999999999999999988999999999999999999999999999999988777778899999
Q ss_pred eeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 289 ~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
+++||++++|+.|+|++++++++++.+....+..+++++++.++++.++|+.++++++.++.+++++++++.|+++...+
T Consensus 243 ~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~ 322 (400)
T PTZ00125 243 VLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKS 322 (400)
T ss_pred EEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999885599999999999999877677889999999999999999998877889999999999999998875544
Q ss_pred CCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 369 PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 369 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+ .+..+++.|.++++.++.+. .....++++.|+++||++.|...+++||+|++.++++++++++++|.++++ ++.
T Consensus 323 ~-~~~~~~~~g~~~~v~~~~~~-~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~-~~~ 397 (400)
T PTZ00125 323 P-WVKEIRGKGLLNAIVFDHSD-GVNAWDLCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLK-SFD 397 (400)
T ss_pred C-CeEEEecccEEEEEEEccCc-chHHHHHHHHHHHCCeEEeecCCCEEEEECCccCCHHHHHHHHHHHHHHHH-HHh
Confidence 3 66677899999999886421 136778999999999999998889999999999999999999999999998 763
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=458.01 Aligned_cols=390 Identities=23% Similarity=0.342 Sum_probs=326.0
Q ss_pred CCchHHHHHHHhhhcccCC---------CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 36 SSSSQQLINLEYEYSAHNY---------HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
.++|.++.++.++++.... .+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+++++
T Consensus 27 ~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~ 106 (453)
T PRK07046 27 HPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARR 106 (453)
T ss_pred ChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHh
Confidence 3568899999988765432 1468999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
.... .+.++...+++++|++..+.+++.|+|||+||++.|+|+++.+ .|++.|+.+.++|||++...+..
T Consensus 107 ~~~~--~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~--------TGr~~ii~~~g~YHG~~d~~l~~ 176 (453)
T PRK07046 107 GLTT--MLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAV--------TGRPKILVFNGCYHGTVDDVFVD 176 (453)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHh--------hCCCEEEEECCCCCCCcHHhHhh
Confidence 6542 3467788999999999888999999999999999999999986 36779999999999997554432
Q ss_pred --cCCcccccCCCC----CCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcE
Q 012138 187 --SCDNEAIRGFGP----LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260 (470)
Q Consensus 187 --~~~~~~~~~~~~----~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gil 260 (470)
++.+..+..+.+ ...++..+||||++++++++.. +++++||+||+++.+|.+.|+++|+++|+++|++||++
T Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~--~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~l 254 (453)
T PRK07046 177 LVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALAD--GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTL 254 (453)
T ss_pred ccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhCC--CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCE
Confidence 222212222221 1234678899999999999953 48999999999999999999999999999999999999
Q ss_pred EEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---------CCccCCCCCCHHHH
Q 012138 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---------GEHGSTFGGNPLAS 331 (470)
Q Consensus 261 lI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---------~~~~~t~~~~~~~~ 331 (470)
||+|||++ | |.|.....+++++.||+++++|+++||+ |+|++++++++++.+.+ ..+++||++||++|
T Consensus 255 lI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG~-Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~ 331 (453)
T PRK07046 255 LVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGGV-PCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAM 331 (453)
T ss_pred EEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCCC-cceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHH
Confidence 99999998 4 2443334567899999999999999997 99999999999998752 13678999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----------chhHHHHHH
Q 012138 332 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSAYDICL 400 (470)
Q Consensus 332 aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~ 400 (470)
+++.++|+.++++++.+++++++++|+++|+++..+++ .+..+++.|+++.+.+..... ......+..
T Consensus 332 aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (453)
T PRK07046 332 AAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHG-LPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHL 410 (453)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHH
Confidence 99999999998888999999999999999999887775 677899999998887743210 012346778
Q ss_pred HHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 401 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 401 ~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.|+++||++.+. .+.++++|+ +|++||++++++++++++ ++
T Consensus 411 ~~~~~Gv~~~~~-~~~~~~~p~--~t~~did~~~~~~~~~l~-~~ 451 (453)
T PRK07046 411 YLLNRGVLITPF-HNMMLVCPA--TTAADVDRLVAAFDACLG-EL 451 (453)
T ss_pred HHHHCCCEEecc-cCcEEEeCC--CCHHHHHHHHHHHHHHHH-HH
Confidence 889999999874 467889875 999999999999999998 65
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=451.56 Aligned_cols=370 Identities=38% Similarity=0.643 Sum_probs=329.6
Q ss_pred CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC
Q 012138 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 133 (470)
Q Consensus 54 ~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 133 (470)
+.+.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+++++..+.+..+.++...++++++.+..+.+
T Consensus 8 ~~~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~ 87 (377)
T PRK02936 8 YGRFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGD 87 (377)
T ss_pred ccCCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCC
Confidence 34578999999999999999999999999999999999999999999999988655444456778889999999887778
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHH
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 213 (470)
++++++||++|++.|+++++.+ ++++.|++++++|||++..++.+++....+..+.+..+++..++|+|+++
T Consensus 88 ~~~~~~sG~~a~~~A~~~a~~~--------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 159 (377)
T PRK02936 88 LVFFCNSGAEANEAALKLARKH--------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKA 159 (377)
T ss_pred EEEEeCCcHHHHHHHHHHHHHh--------cCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHH
Confidence 9999999999999999988865 36668999999999999999888876666667777777888899999999
Q ss_pred HHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccc
Q 012138 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK 293 (470)
Q Consensus 214 Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK 293 (470)
+++.+.+ ++++|++||+++++|.+.++++++++|+++|++||+++|+||+|+|||++|.+++++++++.||+++|||
T Consensus 160 l~~~~~~---~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK 236 (377)
T PRK02936 160 LKEVMNE---EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAK 236 (377)
T ss_pred HHHhccC---CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcc
Confidence 9998875 7999999999999999988999999999999999999999999999999998877777889999999999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
++++|+ |+|++++++++++.+....+.++|++++++++++.++|+.+..+++.++++++++++++.|+++...+| .+.
T Consensus 237 ~l~~G~-~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 314 (377)
T PRK02936 237 GLGNGI-PVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQEELEHLE-CVK 314 (377)
T ss_pred cccCCC-ccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCC-cEE
Confidence 999998 999999999999999877778899999999999999999987777889999999999999998655554 567
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.+++.|.++++++.. ....+.+.|.++||++.+.+.+++||+||+.++++++++++++|++++
T Consensus 315 ~v~~~g~~~~i~~~~-----~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 315 NIRGKGLMIGIECTE-----EVAPVIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred eEeecceEEEEEecc-----hHHHHHHHHHHCCeEEecCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 778889888887753 366789999999999998877899999999999999999999998864
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=476.98 Aligned_cols=402 Identities=22% Similarity=0.291 Sum_probs=326.2
Q ss_pred chHHHHHHHhhhcccCCCC-------CceEEEeecCC----EEEeCCCC----eEEeccCCcccccCC-CCCHHHHHHHH
Q 012138 38 SSQQLINLEYEYSAHNYHP-------VPIVFSQAKGS----SIWDPEGN----KYLDFLSAYSAVNQG-HCHPKIMKALQ 101 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~g~----~~~d~~G~----~~lD~~~~~~~~~lG-~~~p~v~~a~~ 101 (470)
+.+++.++..+++|+.|.+ -|.++++++|. |++|.+|+ +|||+.++++..++| |+||+|.+++.
T Consensus 313 ~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~ 392 (817)
T PLN02974 313 RLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVA 392 (817)
T ss_pred HHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHH
Confidence 3455666677777776542 35788999998 99999998 999999999999999 68999999999
Q ss_pred HHHHHccccCC-CCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCC-----------CC
Q 012138 102 EQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSI-----------DE 166 (470)
Q Consensus 102 ~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~-----------g~ 166 (470)
+|++++.+... .+.++...+|+++|.+..+ .++|+|++||+||+|.|||+++++.+..+|.++ ++
T Consensus 393 ~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r 472 (817)
T PLN02974 393 YAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIE 472 (817)
T ss_pred HHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCC
Confidence 99999887654 3568889999999999664 479999999999999999999752222223221 46
Q ss_pred cEEEEEccCccccccchhcccCCcccccCC-CCC-C--------CCe--------eeecCC--C----------------
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGF-GPL-L--------PGH--------LKVDFG--D---------------- 210 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~-~--------~~~--------~~~~~~--d---------------- 210 (470)
.+||.+.++|||.|.+++++++.+.++..| .+. . |.. ..+|++ +
T Consensus 473 ~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f 552 (817)
T PLN02974 473 LKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVF 552 (817)
T ss_pred CEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccc
Confidence 789999999999999999998765444333 221 0 100 011111 0
Q ss_pred -------------HHHHHHHHHh-----cCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 211 -------------ITALEKIFKE-----SGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 211 -------------~~~Le~~l~~-----~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.+.+++.|++ .++++++||+||+ ++.+|.+.|+++|+++|+++|++||++||+|||++|||
T Consensus 553 ~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfG 632 (817)
T PLN02974 553 DKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLW 632 (817)
T ss_pred cccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCC
Confidence 2557777763 2458999999995 89999999999999999999999999999999999999
Q ss_pred ccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc------CCccCCCCCCHHHHHHHHHHHHHHhhh-
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------GEHGSTFGGNPLASAVAIASLDVIRDE- 344 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~- 344 (470)
|+|++|+++++|+.|||++++|+++||++|+|++++++++++.|.. ..|++||++||++|+++.++|++++++
T Consensus 633 RtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~ 712 (817)
T PLN02974 633 RLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPS 712 (817)
T ss_pred cccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999997799999999999998852 258999999999999999999999886
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHH-HcCceeccCCCC
Q 012138 345 ---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMK-ERGILAKPTHDT 415 (470)
Q Consensus 345 ---~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~-~~Gv~~~~~~~~ 415 (470)
++.++.+++++++.+.|.+....+| .+.++++.|+|+++++..+.. ...+..+++.|+ ++||++.+. ++
T Consensus 713 ~~~~l~~~~~~l~~~l~~~l~~~l~~~p-~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-Gn 790 (817)
T PLN02974 713 TNPNLIPPGSRLRELWDEELVRAISSLP-NVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-GN 790 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-CC
Confidence 4555666666777777743334565 899999999999999965421 112467888899 999999886 47
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
++++.||+.++++++++++++|.+.|
T Consensus 791 vi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 791 VVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998876
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=458.69 Aligned_cols=392 Identities=25% Similarity=0.425 Sum_probs=316.7
Q ss_pred HHHHHHhhhcccCCCCCceEEEeecCCEEEeC-CCCeEEeccCCcccccCCCCCHHHH--HHHHHHHHHccc---cCCCC
Q 012138 41 QLINLEYEYSAHNYHPVPIVFSQAKGSSIWDP-EGNKYLDFLSAYSAVNQGHCHPKIM--KALQEQAEKLTL---SSRAF 114 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~-~G~~~lD~~~~~~~~~lG~~~p~v~--~a~~~~~~~~~~---~~~~~ 114 (470)
.+++...+|....-.|+++++++++|+++||. ||++||||.+++++.++||+||+|. +++.++++++.+ ....+
T Consensus 3 ~~~~~~~~~~~~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~ 82 (431)
T TIGR03251 3 RVHEVLSRHMLTDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDV 82 (431)
T ss_pred hHHHHHHHHhhccCCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCC
Confidence 45666777765443356666899999999996 9999999999999999999999999 999999987642 22235
Q ss_pred CCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchh---cccCCC-CCcEEEEEccCccccccchhccc
Q 012138 115 YNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYV---KKKFSI-DEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~---~~~~~~-g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
.++...+++++|++.. +.++++|+|||+||++.|+|+++.|+.. .+|.++ ++.+||.+.++|||++.++++++
T Consensus 83 ~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~ 162 (431)
T TIGR03251 83 YTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLT 162 (431)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhcc
Confidence 5677788888888874 4689999999999999999999986421 122221 24589999999999999999988
Q ss_pred CCcccccCCCCCCCC------eeeec-------------CCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 188 CDNEAIRGFGPLLPG------HLKVD-------------FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~------~~~~~-------------~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
+...++..+.+..+. ...++ +++++++++.+..+++++++||+||+++.+|.+.|+++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~ 242 (431)
T TIGR03251 163 NTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLR 242 (431)
T ss_pred CCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHH
Confidence 754444433332110 00111 12456677788766678999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHH---Hh-hcC-cCCccCC
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV---ML-CIQ-PGEHGST 323 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~---~~-~~~-~~~~~~t 323 (470)
+|+++|++||++||+||||+|||++|.+|+++++++.||+++++|++ ++++++..+++ ++ .+. ...+++|
T Consensus 243 ~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~-----~~~g~~~~~~i~~~~~~~~~~~~~~~~T 317 (431)
T TIGR03251 243 AMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT-----QVCGIMAGRRVDEVADNVFAVPSRLNST 317 (431)
T ss_pred HHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC-----ccceEEecchHHHhhhhcccCccccCCC
Confidence 99999999999999999999999999999999999999999999986 33344444443 22 121 2347889
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH
Q 012138 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
|++||++++++.++|+.++++++.++++++++++++.|+++..++|..+..+++.|+|+.+++.... ....+.+.|+
T Consensus 318 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~---~~~~~~~~l~ 394 (431)
T TIGR03251 318 WGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTA---DRDEVIRQLY 394 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHH---HHHHHHHHHH
Confidence 9999999999999999999888999999999999999999887775477888999999999986432 4667999999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
++||++.+.+.+.+||+||+.+|++||++++++|.++
T Consensus 395 ~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 395 REGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred hCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHhC
Confidence 9999998877789999999999999999999999763
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=446.93 Aligned_cols=394 Identities=44% Similarity=0.763 Sum_probs=343.9
Q ss_pred chHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC
Q 012138 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 117 (470)
.|.++....+++.++.+.++|+++++++|+++||.||++||||.+++++.++||+||++.+++.+++++.......+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 81 (396)
T PRK02627 2 TSEAIIELEKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIE 81 (396)
T ss_pred CHHHHHHHHHHhhcccccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCH
Confidence 35677777777777878788999999999999999999999999999999999999999999999998865544445678
Q ss_pred cHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 118 KFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
.+.+++++|++..+.+++++++||++|++.|+++++.++ .+.. .++..|++++++|||.+..++.+++.+.++..+.
T Consensus 82 ~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~--~~~~-~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (396)
T PRK02627 82 PQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYG--HKKG-IEKPEIITAENSFHGRTLATLSATGQPKYQEGFE 158 (396)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHh--cccC-CCCCeEEEECCCcCcccHHHHHhcCCccccccCC
Confidence 899999999999899999999999999999999998752 1100 1125799999999999999888887665555566
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
+...+...++++|+++|++++.+ ++++|++||++|++|...++++++++|+++|++||++||+||+|+||+++|.++
T Consensus 159 ~~~~~~~~~~~~d~~~l~~~i~~---~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~ 235 (396)
T PRK02627 159 PLVEGFIYVPFNDIEALKAAITD---KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLF 235 (396)
T ss_pred CCCCCceEeCCCCHHHHHHhcCC---CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCcee
Confidence 66666778899999999999954 899999999999999666699999999999999999999999999999999877
Q ss_pred ccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012138 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 357 (470)
Q Consensus 278 ~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l 357 (470)
+++.+++.||+++|||++++|+ |+|++++++++++.+....+.++|+.++++++++.++|+.++++++.++++++++++
T Consensus 236 ~~~~~~~~pdi~t~sK~~~~G~-rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~ 314 (396)
T PRK02627 236 AYQHYGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYL 314 (396)
T ss_pred eehhcCCCCCEEEEcchhhCCc-ccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7777899999999999999998 999999999999998776788899999999999999999988878899999999999
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
++.|.++...+| .+..+++.|.++++++.. +..++++.|+++||++.|++.+++||+|++.++++++++++++|
T Consensus 315 ~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~-----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~~~~~i~~~~~~l 388 (396)
T PRK02627 315 RAKLRELLEKYP-GIKEVRGLGLMIGIELDR-----PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRL 388 (396)
T ss_pred HHHHHHHHHhCC-CeeeeccCcEEEEEEecC-----cHHHHHHHHHHCCeEEeecCCCEEEEECCcccCHHHHHHHHHHH
Confidence 999998876664 566778889999888732 57789999999999999887889999999999999999999999
Q ss_pred HHHHhccc
Q 012138 438 HDVLELDL 445 (470)
Q Consensus 438 ~~~l~~~~ 445 (470)
+++++ ++
T Consensus 389 ~~~l~-~~ 395 (396)
T PRK02627 389 EEVLK-EL 395 (396)
T ss_pred HHHHH-hh
Confidence 99987 54
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=437.44 Aligned_cols=324 Identities=46% Similarity=0.813 Sum_probs=288.5
Q ss_pred EEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCCCcHHHHHHHHhhhh--CCCeEE
Q 012138 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVL 136 (470)
Q Consensus 60 ~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~v~ 136 (470)
++++++|+|+||.||++||||.+++++.++||+||++.+++.++++...+.+ ..+.++...+++++|.+.. +.++++
T Consensus 1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~ 80 (339)
T PF00202_consen 1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVF 80 (339)
T ss_dssp EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEE
T ss_pred CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceee
Confidence 5789999999999999999999999999999999999999999999987765 4567788899999999998 678999
Q ss_pred ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHH---
Q 012138 137 PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA--- 213 (470)
Q Consensus 137 ~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--- 213 (470)
|++||+||++.|+++++.+... ...+++..|+++.++|||++..++++++.+.++..+.+..+++..+|++++..
T Consensus 81 f~~sGseAve~Alkla~~~~~~--~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 158 (339)
T PF00202_consen 81 FANSGSEAVEAALKLARQYHNK--RAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEE 158 (339)
T ss_dssp EESSHHHHHHHHHHHHHHHHHH--THHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHH
T ss_pred eccCchHHHHHHHHHhhccccc--ccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhh
Confidence 9999999999999999932111 11146779999999999999999999988888888889888889999998766
Q ss_pred -------HHHHHHh-cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC
Q 012138 214 -------LEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285 (470)
Q Consensus 214 -------Le~~l~~-~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~ 285 (470)
+++.+.+ ..+++++||+||+++.+|.+.++++|+++|+++|++||+++|+||||+||||+|++|+++++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~ 238 (339)
T PF00202_consen 159 EQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVD 238 (339)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSS
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceeccccc
Confidence 4444432 24589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012138 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 286 pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
||++++||+++||+ |+|++++++++++.+.+..+++||+++|++|+++.++|+.++++++.++++++++++++.|+++.
T Consensus 239 PDiv~~gK~l~gG~-p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~ 317 (339)
T PF00202_consen 239 PDIVTFGKGLGGGL-PISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELA 317 (339)
T ss_dssp SSEEEEEGGGGTTS-SEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccccchhhhh-hcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 99999999999999988889999999999999999999999999999999999999999999999
Q ss_pred hhCCCceEEEeccceeEEEEec
Q 012138 366 QQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 366 ~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
.++| .+..+++.|+|+.+++.
T Consensus 318 ~~~~-~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 318 ARYP-LIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHTT-TEEEEEEETTEEEEEES
T ss_pred HhCC-CeEEEeeeCeEEEEEEE
Confidence 9885 89999999999999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=443.12 Aligned_cols=391 Identities=26% Similarity=0.465 Sum_probs=326.7
Q ss_pred hHHHHHHHhhhcccC-------CC---CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc
Q 012138 39 SQQLINLEYEYSAHN-------YH---PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~-------~~---~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 108 (470)
|+++.++.++++... +. +.|+++++++|+++||.||++||||.+++++.++||+||+|++++.+++++..
T Consensus 2 s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~ 81 (423)
T TIGR00713 2 SENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT 81 (423)
T ss_pred cHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC
Confidence 677888888876432 21 45899999999999999999999999999999999999999999999998865
Q ss_pred ccCCCCCCCcHHHHHHHHhhhhC-CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 109 LSSRAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~~-~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
.+ .+.++...+++++|++.++ .++|+|++||+||++.|+++++.+ .++..||++.++|||++.....++
T Consensus 82 ~~--~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~--------~gr~~ii~~~~~yhG~~~~~~~~~ 151 (423)
T TIGR00713 82 SY--GAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGY--------TGRDKIIKFEGCYHGHHDALLVKA 151 (423)
T ss_pred cC--CCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHh--------hCCCEEEEEcCCCCCChhhhhccc
Confidence 32 2456678899999998874 578999999999999999999986 256799999999999987666544
Q ss_pred CC--cccccCCCCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcE
Q 012138 188 CD--NEAIRGFGPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260 (470)
Q Consensus 188 ~~--~~~~~~~~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gil 260 (470)
+. .....++.+.. +....++++|+++|+++++++++++++|++||+++.+|.+.|+++|+++|+++|++||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 231 (423)
T TIGR00713 152 GSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSL 231 (423)
T ss_pred cCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCE
Confidence 32 11222222221 246778899999999999865558999999999888999997789999999999999999
Q ss_pred EEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHHHHHH
Q 012138 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVAIAS 337 (470)
Q Consensus 261 lI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~a~ 337 (470)
||+||+|+|| ++|..++++++++.||+++|||++++|+ |+|++++++++++.+.. ..+++||++++++|+++.++
T Consensus 232 lI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G~-pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~ 309 (423)
T TIGR00713 232 LIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGL-PVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLAT 309 (423)
T ss_pred EEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCCC-ceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHH
Confidence 9999999999 8887777778899999999999999997 99999999999998863 34678999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHcCc
Q 012138 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKERGI 407 (470)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~Gv 407 (470)
|+.++++++.++++++++++++.|+++..+++ .+..+++.|+++.+.+..+.. ......+++.|+++||
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 388 (423)
T TIGR00713 310 LKLLDEEGVYTELDELAKRLAEGLSEVLEDTG-IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGV 388 (423)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCe
Confidence 99998878999999999999999998777764 677788999999988763210 0123468889999999
Q ss_pred eeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 408 LAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 408 ~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++.+...+.+||+|+ +|+++|++++++|.++++ ++
T Consensus 389 ~v~~~~~~~~~l~~~--~t~~~i~~~~~~l~~~l~-~~ 423 (423)
T TIGR00713 389 FLPPSQFEACFLSAA--HTEEDIENTIEAAEEVFA-EL 423 (423)
T ss_pred EEecCCccceeeECC--CCHHHHHHHHHHHHHHHh-hC
Confidence 988765567899976 899999999999999987 53
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=437.53 Aligned_cols=396 Identities=29% Similarity=0.539 Sum_probs=334.9
Q ss_pred hHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-CCC
Q 012138 39 SQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FYN 116 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~ 116 (470)
.+++.++.+++....+. +.|+++++++|+++||.||++||||.+++++.++||+||++.+++.++++++.+.... +.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~ 83 (425)
T PRK08088 4 NKSLMQRRSAAVPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83 (425)
T ss_pred HHHHHHHHHHhhccccCCCCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCC
Confidence 45667666666666653 4589999999999999999999999999999999999999999999999987654322 335
Q ss_pred CcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccc
Q 012138 117 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEA 192 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 192 (470)
+...+++++|++..+. ++++|++||+||++.|+++++.++ ++..||++.++|||++..+.++++. ..+
T Consensus 84 ~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~--------~r~~iv~~~~~yHG~~~~~~~~~~~~~~~ 155 (425)
T PRK08088 84 EPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT--------KRSGVIAFTGAYHGRTHYTLALTGKVNPY 155 (425)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh--------CCCeEEEECCccCCccHHHHHhhCCCCcc
Confidence 6778999999987652 689999999999999999998862 4557888999999999999888764 234
Q ss_pred ccCCCCCCCCeeeecC----CC------HHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcE
Q 012138 193 IRGFGPLLPGHLKVDF----GD------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~----~d------~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gil 260 (470)
..++.+..+++...++ ++ +++|+++++. .++++++|++||+++..|.+.++++++++|+++|++||++
T Consensus 156 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~ 235 (425)
T PRK08088 156 SAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIM 235 (425)
T ss_pred ccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 5555555444333322 21 5678888862 2458999999999999999888999999999999999999
Q ss_pred EEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH
Q 012138 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 261 lI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 340 (470)
||+||+|+|++++|.++++++.++.||+.+|||++++|+ |+||+++++++++.+....+.+|++++++.++++.++|+.
T Consensus 236 lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~-rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~ 314 (425)
T PRK08088 236 LIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGF-PLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKV 314 (425)
T ss_pred EEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCCC-cceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999998887778899999999999999998 9999999999999998888889999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-----CchhHHHHHHHHHHcCceeccCC--
Q 012138 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGILAKPTH-- 413 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~~~~~~-- 413 (470)
++.+++.+++++.++++++.|.++...+| .+..+++.|+++++.+..+. .......+++.|.++||++.++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~ 393 (425)
T PRK08088 315 FEQENLLQKANALGEKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY 393 (425)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC
Confidence 98888999999999999999999988876 67788999999999884321 01346789999999999887654
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+||+|++.+|+++|++++++|.+++. ++
T Consensus 394 ~~~iRl~~~~~~t~~ei~~~i~~l~~~l~-~~ 424 (425)
T PRK08088 394 YNVLRILVPLTIEDAQIRQGLEIIAQCFD-EA 424 (425)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHH-hh
Confidence 58999999999999999999999999998 54
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=440.59 Aligned_cols=393 Identities=26% Similarity=0.433 Sum_probs=331.9
Q ss_pred CchHHHHHHHhhhcccCC----------CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHNY----------HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~----------~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
++|++|.|+.++|+.... .+.|+++.+++|+++||.+|++||||.++++..++||+||+|.+++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~ 81 (426)
T PRK00062 2 SKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK 81 (426)
T ss_pred chhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh
Confidence 468999999998875432 2347899999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
... ..+.++...+|+++|++.+ +.++++|++||+||++.|+++++.+ .+++.||+++++|||++.....
T Consensus 82 ~~~--~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~--------~g~~~ii~~~~~yHG~t~~~~~ 151 (426)
T PRK00062 82 GLS--FGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGY--------TGRDKIIKFEGCYHGHADSLLV 151 (426)
T ss_pred CCc--CCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHH--------hCCCeEEEEcCccCCchhhhhh
Confidence 432 2345677889999999876 5789999999999999999999986 2566899999999999977666
Q ss_pred ccCCcc--cccCCCCC-----CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNE--AIRGFGPL-----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~--~~~~~~~~-----~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.++... ....+.+. .++...++|+|++++++.+++.++++++||+||+++.+|.+.|+++|+++|+++|++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~ 231 (426)
T PRK00062 152 KAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHG 231 (426)
T ss_pred ccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 543211 11111111 12457788999999999997655689999999999999999988999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~ 335 (470)
+++|+||||+|| ++|.+++.+++++.||+++|||++++|+ |+|++++++++++.+.. ..+.+||+++|++++++.
T Consensus 232 ~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G~-p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~ 309 (426)
T PRK00062 232 ALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGGL-PVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGL 309 (426)
T ss_pred CEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCCC-cceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHH
Confidence 999999999999 7887777888899999999999999997 99999999999998853 246678999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHc
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKER 405 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~ 405 (470)
++|+.++++++.++++++++++++.|+++..++| .+..+++.|+|+.+++..+.. ......+.+.|+++
T Consensus 310 a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 388 (426)
T PRK00062 310 ATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAG-IPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDE 388 (426)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC-CceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHC
Confidence 9999998888999999999999999999887775 677889999999999864320 01246799999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
||++.+.+.+.++++ +.+|++||++++++|+++++ ++
T Consensus 389 Gv~v~~~~~~~~~~~--~~~t~~ei~~~~~~l~~~l~-~~ 425 (426)
T PRK00062 389 GVYLAPSQFEAGFVS--AAHTDEDIEKTLEAARKAFA-AL 425 (426)
T ss_pred CeEeecCCcCceeee--ccCCHHHHHHHHHHHHHHHH-hh
Confidence 999988766677775 89999999999999999997 54
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=422.92 Aligned_cols=368 Identities=32% Similarity=0.542 Sum_probs=316.4
Q ss_pred CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC
Q 012138 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 133 (470)
Q Consensus 54 ~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 133 (470)
|.+.|+++.+++|+|+||.||++||||.++++..++|| ||++.+++.++++.+......+.++...++++++... ...
T Consensus 8 ~~~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~-~~~ 85 (375)
T PRK04260 8 YKRAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD-KDY 85 (375)
T ss_pred cCCCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC-cCC
Confidence 34568899999999999999999999999999999999 9999999999998765544334555666677666432 123
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHH
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 213 (470)
.++|++||+||++.|+++++.+ .++..||+++++|||++..++++++.......+.+..+.+...+|+|+++
T Consensus 86 ~~~~~~SGseA~~~Al~~ar~~--------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~ 157 (375)
T PRK04260 86 LAFFCNSGAEANEAAIKIARKA--------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNS 157 (375)
T ss_pred EEEEcCccHHHHHHHHHHHHHh--------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHH
Confidence 5799999999999999999875 24568999999999999998888776555555555444445557889999
Q ss_pred HHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccc
Q 012138 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK 293 (470)
Q Consensus 214 Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK 293 (470)
+++++.+ ++++|++||++|++|.+.++.+|++++.++|++||+++|+||+|+|||++|.++.++.+++.||+++|||
T Consensus 158 l~~~l~~---~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK 234 (375)
T PRK04260 158 VKALVNK---NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAK 234 (375)
T ss_pred HHHhcCC---CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecc
Confidence 9998864 7899999999999999998899999999999999999999999999999998777777899999999999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
++++|+ |+|++++++++++.+....+.+||+++++.++++.++|+.++.+++.+++++..+++++.|.++...+| .+.
T Consensus 235 ~l~~G~-~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 312 (375)
T PRK04260 235 GLANGV-PVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKE-TVT 312 (375)
T ss_pred cccCCc-ceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCC-Cee
Confidence 999997 999999999999998776788899999999999999999998788999999999999999988776664 567
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.+++.|+++++++.. ...++.++|+++||++.+.+.+.+||+|++.++++++++++++|++++
T Consensus 313 ~~~~~g~~~~~~~~~-----~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 313 TVRGLGYMIGIETTA-----DLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375 (375)
T ss_pred EEeccceEEEEEecC-----cHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHHHHHHHHHHHHHhC
Confidence 788899999998742 467899999999999988877899999999999999999999998764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=428.53 Aligned_cols=386 Identities=46% Similarity=0.782 Sum_probs=332.3
Q ss_pred HhhhcccCC--CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-CCCCcHHHH
Q 012138 46 EYEYSAHNY--HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FYNDKFPVF 122 (470)
Q Consensus 46 ~~~~~~~~~--~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l 122 (470)
.+++.+..+ .+.|+++++++|+++||.||++||||.++++..++||+||+|.+++.++++........ +.++...++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l 84 (413)
T cd00610 5 DRKVLWHGYTVRPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVEL 84 (413)
T ss_pred hhhhccccccCCCCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHH
Confidence 344555554 46789999999999999999999999999988999999999999999999876554432 256788999
Q ss_pred HHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC
Q 012138 123 AERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL 200 (470)
Q Consensus 123 ~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 200 (470)
++.|+++++ .+++++++||++|++.++++++.+ .+++.|++++++|||++...+.+++...+...+.+..
T Consensus 85 ~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~--------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T cd00610 85 AELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY--------TGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL 156 (413)
T ss_pred HHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH--------cCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence 999999997 889999999999999999999864 2455899999999999999888876554544555555
Q ss_pred CCeeeecCC-----------CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 201 PGHLKVDFG-----------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 201 ~~~~~~~~~-----------d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
.++..+|++ |+++|+++++++++++++|++||+++++|.+.|+++++++|.++|++||+++|+||+|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g 236 (413)
T cd00610 157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG 236 (413)
T ss_pred CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 667888888 899999999875557899999999999999988999999999999999999999999999
Q ss_pred CcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhc--CcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 270 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~--~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
||++|..+..+++++.||++++||++++|+ |+|++++++++++.+ ....+.+|+++++++++++.++|+.++++++.
T Consensus 237 ~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~-~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~ 315 (413)
T cd00610 237 FGRTGKMFAFEHFGVEPDIVTLGKGLGGGL-PLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLL 315 (413)
T ss_pred CCcCcchhhHhhcCCCCCeEEEcccccCcc-ccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHH
Confidence 999998877788899999999999999997 999999999999985 45567789999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccCCCCEEEEecC
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTHDTIVRLTPP 422 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~ 422 (470)
++++++++++++.|+++...++ .+..+++.|.++++.+..... ......+++.|+++||++.|+..+.+|++|+
T Consensus 316 ~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~ 394 (413)
T cd00610 316 ENAAELGEYLRERLRELAEKHP-LVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPP 394 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC-cEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECC
Confidence 9999999999999998866443 566678899999998865310 1256789999999999999887789999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 012138 423 LSISSNELQEGSKALHDVL 441 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l 441 (470)
+.+|+++|++++++|++++
T Consensus 395 ~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 395 LIITEEEIDEGLDALDEAL 413 (413)
T ss_pred CcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-53 Score=375.11 Aligned_cols=397 Identities=29% Similarity=0.504 Sum_probs=330.8
Q ss_pred chHHHHHHHhhhccc----CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC
Q 012138 38 SSQQLINLEYEYSAH----NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~----~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~ 113 (470)
+..+.+..+++++-. .|..-|+.+.|++|.|++|.+|.+|||++++.. ..||+||+|++|...|+...+..++
T Consensus 6 SK~etlklRk~hIG~~Cq~Fy~sDP~kivRaq~QYmfDE~g~~yLDCInNVa--Hvghchp~VV~A~~kQmat~~tN~R- 82 (452)
T KOG1403|consen 6 SKTETLKLRKQHIGQACQLFYRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATISTNNR- 82 (452)
T ss_pred hhHHHHhHHHhccCcceeEEecCCchhhehhccceeeccCcccHHHHhhhhh--hcccCCHHHHHHHHHHHhHhcccch-
Confidence 346678888887754 356679999999999999999999999999874 4799999999999999998776554
Q ss_pred CCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 114 FYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
|.++...+.++.|...+ +++.++|+|||+|||.+|++++|.++ +...+|+.+..|||+....+.++... +
T Consensus 83 Flhd~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ft--------khqDvItldHAYHGHl~s~mE~SPYK-F 153 (452)
T KOG1403|consen 83 FLHDELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFT--------KHQDVITLDHAYHGHLQSVMEVSPYK-F 153 (452)
T ss_pred hhHHHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhc--------ccCceEEEechhccceeeeeecccee-c
Confidence 66777788888887665 68899999999999999999999963 55689999999999988877776421 1
Q ss_pred ccCCCCCCCC---------eeeecCC-------C-----HHHHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHH
Q 012138 193 IRGFGPLLPG---------HLKVDFG-------D-----ITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 193 ~~~~~~~~~~---------~~~~~~~-------d-----~~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
..+-....|+ ++.-+|. | .+.+++++.+ .+..++++|.|..++-+|.+.||.+|++
T Consensus 154 ~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq 233 (452)
T KOG1403|consen 154 NQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQ 233 (452)
T ss_pred cCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHH
Confidence 1111111122 1111111 1 3556766654 2357899999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc--CCccCCCC
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP--GEHGSTFG 325 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~--~~~~~t~~ 325 (470)
++.+..+.+|-++|.||||.||||.|+. |+++.+++.|||++++|.+|+|. |+++++.++++.+.|.. ....+||+
T Consensus 234 ~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGh-PVa~VattkeIA~Af~atgv~YFNTyG 312 (452)
T KOG1403|consen 234 AVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGH-PVAAVATTKEIAQAFHATGVEYFNTYG 312 (452)
T ss_pred HHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCC-eeeEEeccHHHHHHhccccceehhccC
Confidence 9999999999999999999999999965 88999999999999999999999 99999999999999975 24567999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICL 400 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~ 400 (470)
+||++||++++.++.+++++++++.++.+++|...|+++..+++ .+.++||.|+|+++++..+.. ...+..+..
T Consensus 313 GnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~-~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~ 391 (452)
T KOG1403|consen 313 GNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHE-CIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVN 391 (452)
T ss_pred CCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhcc-ceeccccceEEEeeeeecccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886 899999999999999876542 234566778
Q ss_pred HHHHc-CceeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 401 KMKER-GILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 401 ~l~~~-Gv~~~~~--~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
+|++. +|+++.. +.|.+.|.||.+.++++.++++..|+++|. .+.+.-
T Consensus 392 rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT-~mee~~ 442 (452)
T KOG1403|consen 392 RLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT-VMEERL 442 (452)
T ss_pred HHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH-HHHHHH
Confidence 88887 7998743 478999999999999999999999999998 665443
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=404.04 Aligned_cols=363 Identities=24% Similarity=0.358 Sum_probs=288.1
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-CCe
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-YDM 134 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~ 134 (470)
+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.+|+++..... .......+++++|.+..+ .++
T Consensus 29 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~--~~~~~~~~la~~l~~~~p~~~~ 106 (431)
T PRK06209 29 LAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFT--RPSAIELDAAESFLELIDGADM 106 (431)
T ss_pred CCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCCC--CCCHHHHHHHHHHHHhCCccce
Confidence 35789999999999999999999999999999999999999999999999865321 233344578999999874 689
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEE-ccCccccccchhcccC-CcccccCCCCCCCCeeeecCCCHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC-CGCFHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~-~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
++|++||+||++.|+|+++.| .|+..|+.+ .++|||........+. ..... .........++|||++
T Consensus 107 v~f~~sGseA~e~AlklAr~~--------tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~d~~ 175 (431)
T PRK06209 107 VKFCKNGSDATSAAVRLARAY--------TGRDLVARCADHPFFSTDDWFIGTTPMSAGIP---ASVSALTVTFRYNDIA 175 (431)
T ss_pred EEEecCHHHHHHHHHHHHHHH--------hCCCeEEEeccCccccccccccccCCCCCCCC---hhHhccccccCCCCHH
Confidence 999999999999999999986 356688888 6777763211110000 00000 0011224577899999
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s 292 (470)
+|+++++++++++++|++||+++. .|+++|+++|+++|++||++||+||||+||++++. +..+++++.||++++|
T Consensus 176 ~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~-g~~~~~gv~PDi~t~g 250 (431)
T PRK06209 176 SLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR-GAQKLYGIVPDLSCFG 250 (431)
T ss_pred HHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc-hhhHHhCCCcceeeeh
Confidence 999999866568999999998765 55899999999999999999999999999976532 2234579999999999
Q ss_pred ccccCCCcceeEEEecHHHHhh--cC------cCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012138 293 KALGGGVIPVSAVLADKEVMLC--IQ------PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 293 K~l~gG~~~ig~v~~~~~~~~~--~~------~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 364 (470)
|+++||+ |+|++++++++++. +. ...+++||++||++++++.++|+.++++++.++++++++++++.|+++
T Consensus 251 K~lggG~-p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~ 329 (431)
T PRK06209 251 KALGNGF-AVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEA 329 (431)
T ss_pred hhhcCCc-ccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 9999997 99999999999986 31 123688999999999999999999998899999999999999999998
Q ss_pred HhhCCCceEEEeccceeEEEEeccCC---C--chhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTA---L--PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~---~--~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
..++| ....+++.|.+..+.+.... . ......+.+.|+++|+++.| ++++ ..+|+++|++++++|.+
T Consensus 330 ~~~~~-~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----l~is--~~ht~~dId~~l~~l~~ 401 (431)
T PRK06209 330 AAEHG-LQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----LVVS--YAHGDADIERTIDAVHG 401 (431)
T ss_pred HHhCC-CCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----cccc--ccCCHHHHHHHHHHHHH
Confidence 87775 66678888887777664211 0 11123678889999998732 3444 68899999999999999
Q ss_pred HHhcccC
Q 012138 440 VLELDLP 446 (470)
Q Consensus 440 ~l~~~~~ 446 (470)
++. ++.
T Consensus 402 ~l~-~~~ 407 (431)
T PRK06209 402 ALG-VYR 407 (431)
T ss_pred HHH-HHH
Confidence 999 874
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=399.77 Aligned_cols=375 Identities=39% Similarity=0.690 Sum_probs=318.7
Q ss_pred CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC
Q 012138 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY 132 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 132 (470)
.+.+.|+++++++|.++||.+|++||||.++++.+++||+||.+.+++.++++........+..+...+++++++++++.
T Consensus 5 ~~~~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~ 84 (379)
T TIGR00707 5 TYGRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGA 84 (379)
T ss_pred ccCCCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC
Confidence 35578999999999999999999999999999999999999999999999998875544445677899999999999999
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHH
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
+++++++||++|++.++++++.+... ++ ++++.|++++++|||....+...++...+...+.+...+...++++|++
T Consensus 85 ~~~~~~~sg~~a~~~a~~~~~~~~~~-~~--~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (379)
T TIGR00707 85 DRVFFCNSGAEANEAALKLARKYTGD-KG--KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIE 161 (379)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhhc-cC--CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHH
Confidence 99999999999999999988653110 11 1245888999999999988887776554433445555666778889999
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s 292 (470)
+|++.+++ ++++|+++|+++++|.+.++.+++++|.++|++||+++|+||+|++|++.|..+.++..++.||+++||
T Consensus 162 ~l~~~~~~---~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~s 238 (379)
T TIGR00707 162 SLKKAIDD---ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLA 238 (379)
T ss_pred HHHHHhhh---CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEc
Confidence 99999976 789999999988899876689999999999999999999999999999888765556678889999999
Q ss_pred ccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 293 KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 293 K~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
|++++|+ |+|++++++++++.+.......+|+.++++++++.++|+.++..++.++++++++++++.|+++....+ +
T Consensus 239 K~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 315 (379)
T TIGR00707 239 KGLGGGV-PIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYP--N 315 (379)
T ss_pred ccccCCc-ccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhCC--C
Confidence 9999998 999999999999999876677888999999999999999887777889999999999999988755432 3
Q ss_pred EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 373 KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+++.|.++++.++. +..++++.|.++||++.|.+.+++|++|++.+|++++++++++|++++
T Consensus 316 ~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 316 KEVRGKGLMLGIELEA-----PCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379 (379)
T ss_pred CccccCceEEEEEecC-----cHHHHHHHHHHCCcEEeeCCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 3455678888887653 357899999999999999877899999999999999999999998764
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=352.49 Aligned_cols=400 Identities=25% Similarity=0.345 Sum_probs=322.8
Q ss_pred CCCCCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHH-H-HHHccc
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE-Q-AEKLTL 109 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~-~-~~~~~~ 109 (470)
.+.++++++++.++..++....--.+++..++..|.|++|+||+.+||..+.+.+.++|++||.+++++.. + +..+..
T Consensus 33 esIPGPks~~l~kel~~v~~t~~v~F~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~lvn 112 (484)
T KOG1405|consen 33 ESIPGPKSQELKKELDKVQDTEAVHFFVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVN 112 (484)
T ss_pred ccCCCchhHHHHHHHhHhhcccceEEehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHHhc
Confidence 36788999999888887665444446788999999999999999999999999999999999999998753 2 222211
Q ss_pred cCCCCCCCcHHHHHHHHhhh----h--CCCeEEecCChhHHHHHHHHHHHHhchhcc-c---------------CCCC--
Q 012138 110 SSRAFYNDKFPVFAERLTSM----F--GYDMVLPMNTGAEGVETALKLARKWGYVKK-K---------------FSID-- 165 (470)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~----~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~-~---------------~~~g-- 165 (470)
-+ ..-+-+..++++.+.+. . |.+.|.+.-+|+.|||.|++.+..|...++ | .+||
T Consensus 113 RP-ALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P 191 (484)
T KOG1405|consen 113 RP-ALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAP 191 (484)
T ss_pred cc-cccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCC
Confidence 11 11122345666666552 2 677899999999999999999887643322 2 1232
Q ss_pred CcEEEEEccCccccccchhcccCCcc--------cccCCCCCCCCeeee----cCC------CHHHHHHHHHhcC---CC
Q 012138 166 EAIIVSCCGCFHGRTLAAISMSCDNE--------AIRGFGPLLPGHLKV----DFG------DITALEKIFKESG---DQ 224 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~----~~~------d~~~Le~~l~~~~---~~ 224 (470)
+-.|++|.++|||++++.++.+.... +.++..++..-.+++ .+| +++++|++|.++. ..
T Consensus 192 ~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~p 271 (484)
T KOG1405|consen 192 DLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKP 271 (484)
T ss_pred ceeeeeeccccccccccccccccCccccccCCCCCCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCC
Confidence 34688899999999999998876432 333333332111111 112 5889999998875 46
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC--cceeecccccc-CCCcc
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKALG-GGVIP 301 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~--pdi~s~sK~l~-gG~~~ 301 (470)
++++|+||+|+++|....+++|++.|+++|+|||+.+|+||||+|-|.||++|++++|++. ||++||||-+- ||+
T Consensus 272 VaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gGf-- 349 (484)
T KOG1405|consen 272 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGF-- 349 (484)
T ss_pred eEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCcc--
Confidence 8999999999999999999999999999999999999999999999999999999999985 89999998765 776
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
.-+++++- -.++.+..||.+.|.-...+.+++++++++++.+++...++.|..+|.+++.++|+.+...||+|.|
T Consensus 350 ----fh~~~frp-n~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF 424 (484)
T KOG1405|consen 350 ----FHDEEFRP-NEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTF 424 (484)
T ss_pred ----ccCcccCC-CchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceE
Confidence 22333321 1245678899999999999999999999999999999999999999999999999889999999999
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.|.+.... ..+.++..++-+|+.+..++...|||.|+++.++.+.+-++++|.++++
T Consensus 425 ~a~d~ps~~---~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 425 IAWDCPSGS---IRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred EEEeCCChH---HHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 999988765 7788999999999999999999999999999999999999999999987
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=321.93 Aligned_cols=349 Identities=18% Similarity=0.220 Sum_probs=255.8
Q ss_pred CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHcc-cc--CC--CCCCCcHHHHHHHHhh
Q 012138 55 HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLT-LS--SR--AFYNDKFPVFAERLTS 128 (470)
Q Consensus 55 ~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~-~~--~~--~~~~~~~~~l~~~l~~ 128 (470)
.|.++.+++++|+++||.||++||||.+. ..+| |+||+|++++.+++++++ .. .. .+.++...++++.|++
T Consensus 26 ~~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~ 102 (402)
T PRK07505 26 GLNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSE 102 (402)
T ss_pred ccccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHH
Confidence 35568899999999999999999999884 5678 999999999999998754 11 11 1345678899999999
Q ss_pred hhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC
Q 012138 129 MFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF 208 (470)
Q Consensus 129 ~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (470)
+++. ++++++||++|++.+++++....++ +++..+|+++.+|||+...... .... ..++..+|+
T Consensus 103 ~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~-----~~~~~vi~~~~~~H~s~~~~~~------~~~~----~~~v~~~~~ 166 (402)
T PRK07505 103 LFGA-SVLTFTSCSAAHLGILPLLASGHLT-----GGVPPHMVFDKNAHASLNILKG------ICAD----ETEVETIDH 166 (402)
T ss_pred HhCC-CEEEECChHHHHHHHHHHHHhcccC-----CCCCCEEEEchhhhHhHHhhhh------hhhc----CCeEEEeCC
Confidence 9987 7777889999999999987642111 2455788899999985422111 1111 134678899
Q ss_pred CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc--CCcccCCccccccCCC-C
Q 012138 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLASDWEEV-R 285 (470)
Q Consensus 209 ~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~--g~g~~G~~~~~~~~~~-~ 285 (470)
+|+++|++++++. ...+|++|| +||+|.+.+ +++|.++|++||++||+||+|+ ++|++|.++..++++. .
T Consensus 167 ~d~~~l~~~~~~~--~~~~vl~~p-~~~~G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~ 239 (402)
T PRK07505 167 NDLDALEDICKTN--KTVAYVADG-VYSMGGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRL 239 (402)
T ss_pred CCHHHHHHHHhcC--CCEEEEEec-ccccCCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCC
Confidence 9999999998752 456777888 678999997 9999999999999999999994 6888888776677776 6
Q ss_pred ccee----eccccccCCCcceeEEE-ecHHHHhhcCcCCccCCCCC--CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012138 286 PDMV----ILGKALGGGVIPVSAVL-ADKEVMLCIQPGEHGSTFGG--NPLASAVAIASLDVIRDEKLAERSAHLGEELR 358 (470)
Q Consensus 286 pdi~----s~sK~l~gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 358 (470)
||.+ |+||+++++ .|+++ .++++++.+....+..+|++ ++++++++.++++.+.++.+.+.. ++++
T Consensus 240 ~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~----~~l~ 312 (402)
T PRK07505 240 NERTIIAASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQ----QKLQ 312 (402)
T ss_pred CCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHH----HHHH
Confidence 7744 899998843 24555 47888888876666677764 468999999999876654443332 2333
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEE-EeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i 430 (470)
+.+..+... ....+++.+.++.+ .+... ..+.++++.|+++||++.+. +.+++||+|++.+|+||+
T Consensus 313 ~~~~~~~~~---~~~~~~g~~~~i~~~~~~~~---~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei 386 (402)
T PRK07505 313 NNIALFDSL---IPTEQSGSFLPIRLIYIGDE---DTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEI 386 (402)
T ss_pred HHHHHHHHH---HHhcCCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHH
Confidence 333222111 01123455555433 22221 24678999999999999754 236899999999999999
Q ss_pred HHHHHHHHHHHh
Q 012138 431 QEGSKALHDVLE 442 (470)
Q Consensus 431 ~~~~~~l~~~l~ 442 (470)
++++++|+++++
T Consensus 387 ~~~~~~l~~~l~ 398 (402)
T PRK07505 387 KRLCSLLKEILD 398 (402)
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=314.21 Aligned_cols=342 Identities=20% Similarity=0.248 Sum_probs=262.9
Q ss_pred EEEeecCCEEEeCCCCeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCC---C--CCCCcHHHHHHHHhhhhCCC
Q 012138 60 VFSQAKGSSIWDPEGNKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSR---A--FYNDKFPVFAERLTSMFGYD 133 (470)
Q Consensus 60 ~~~~~~g~~~~d~~G~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~--~~~~~~~~l~~~l~~~~~~~ 133 (470)
++++++|.++| .+|++||||.++ +.... .||++.+++.+++++++.++. . .+.+.+.++++.|+++++.+
T Consensus 95 ~~~~~~G~~i~-~~G~~~id~~s~~~lgl~---~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~ 170 (481)
T PLN02822 95 VLESAAGPHTI-INGKDVVNFASANYLGLI---GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP 170 (481)
T ss_pred ceecCCCCeEE-ECCceEEEeECCCcCCCC---CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCC
Confidence 67889999999 899999999987 33322 699999999999999765322 1 24567899999999999754
Q ss_pred -eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHH
Q 012138 134 -MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 134 -~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
.+++++ |..++..+++.+.+ +++ +|.+++.||++...++.+++. .+..++|||.+
T Consensus 171 ~~i~~s~-G~~a~~sai~a~~~---------~gd--~Ii~d~~~H~s~~~~~~ls~~------------~~~~~~~nd~~ 226 (481)
T PLN02822 171 DSILYSY-GLSTIFSVIPAFCK---------KGD--IIVADEGVHWGIQNGLYLSRS------------TIVYFKHNDME 226 (481)
T ss_pred CEEEECC-HHHHHHHHHHHhCC---------CCC--EEEEeCCccHHHHHHHHHcCC------------eEEEECCCCHH
Confidence 456665 55578888875532 233 444677789888777666642 24688999999
Q ss_pred HHHHHHHhcC------CCe-EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc--CCcccCCccccccCC
Q 012138 213 ALEKIFKESG------DQI-AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLASDWEE 283 (470)
Q Consensus 213 ~Le~~l~~~~------~~~-~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~--g~g~~G~~~~~~~~~ 283 (470)
+++..+++.. +++ ++|++|++++++|.+.| +++|+++|++||++||+||+|+ .+|++|++. .++++
T Consensus 227 ~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~-~e~~~ 301 (481)
T PLN02822 227 SLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGL-SEHFG 301 (481)
T ss_pred HHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCCh-HHHcC
Confidence 9988886521 234 79999999999999998 9999999999999999999999 367788774 67788
Q ss_pred C---Ccceee--cccccc--CCCcceeEEEecHHHHhhcCcCCccCCCCCC--HHHHHHHHHHHHHHhh-hhHHHHHHHH
Q 012138 284 V---RPDMVI--LGKALG--GGVIPVSAVLADKEVMLCIQPGEHGSTFGGN--PLASAVAIASLDVIRD-EKLAERSAHL 353 (470)
Q Consensus 284 ~---~pdi~s--~sK~l~--gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~~~~-~~~~~~~~~~ 353 (470)
+ .+|+++ |||+++ || ++++++++++.++...++.+|+++ |..++++.++|+.+++ +++.++++++
T Consensus 302 v~~~~~dii~~s~sKalg~~GG-----~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~ 376 (481)
T PLN02822 302 VPIEKIDIITAAMGHALATEGG-----FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKEN 376 (481)
T ss_pred CCCCCCeEEEecchhhhhhCCe-----EEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 7 678875 889998 54 588999999998877778888865 7788999999998876 6788999999
Q ss_pred HHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccC-CC----chhHHHHHHHHH-HcCceeccCC---------CCEE
Q 012138 354 GEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKT-AL----PVSAYDICLKMK-ERGILAKPTH---------DTIV 417 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~-~~----~~~~~~~~~~l~-~~Gv~~~~~~---------~~~i 417 (470)
++++++.|+++. .+... .+.+.++.+.+... .. .....+++++|+ ++||++.+.. +..+
T Consensus 377 ~~~l~~~L~~~~-----g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~l 451 (481)
T PLN02822 377 IALLHKGLSDIP-----GLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGI 451 (481)
T ss_pred HHHHHHHHHhcC-----CcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcE
Confidence 999999998742 12222 24455666666432 00 012467899998 7799998541 3469
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 418 RLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 418 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|++++..+|+++|++++++|++++. ++
T Consensus 452 Ri~is~~~t~edI~~~~~~l~~~~~-~~ 478 (481)
T PLN02822 452 RLFVSAGHTESDILKASESLKRVAA-SV 478 (481)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHH-HH
Confidence 9998899999999999999999987 54
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=296.50 Aligned_cols=332 Identities=19% Similarity=0.215 Sum_probs=255.0
Q ss_pred CCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~ 146 (470)
+|+++++|.++ ..||. +||+|++++.++++++++.+. ...++.+.+++++|+++++.+++++++||++|++
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~ 119 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNW 119 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHH
Confidence 45899999987 44555 799999999999998765421 1234568999999999999899999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~ 225 (470)
.+++.+.... ++ .+|+.+..||+++..++...+.. ...++++|++++++.++... +++
T Consensus 120 ~ai~~l~~~~-------~g--~~I~~~~~~H~s~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~~~~~~~ 178 (406)
T PRK13393 120 AALSTLGSRL-------PG--CVILSDELNHASMIEGIRHSRAE------------KRIFRHNDPADLERKLSDLDPHRP 178 (406)
T ss_pred HHHHHhhcCC-------CC--CEEEEccchhHHHHHHHHHcCCe------------EEEeCCCCHHHHHHHHHhccCCCC
Confidence 9999553310 23 46677778899988776654321 35678889999999887542 367
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCccccccCCCC--ccee--eccccccCCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEVR--PDMV--ILGKALGGGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~~~~~~~--pdi~--s~sK~l~gG~ 299 (470)
++|++|+++|++|.+.| +++|.++|++||+++|+||+|+ |+ |+.|..+ .++.++. +|++ +|||+++.
T Consensus 179 ~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~~~~~i~~~tlsKa~g~-- 251 (406)
T PRK13393 179 KLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLADRLTIIEGTLAKAFGV-- 251 (406)
T ss_pred EEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCCCCCeEEEEeCchhhcc--
Confidence 89999999999999998 9999999999999999999998 75 8888765 3555554 5776 99999982
Q ss_pred cceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 300 IPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
..|++++++++++.+...... .+.+.+|.+++++.++|+.+++. ..+++.+++++++++.|++++ +..++
T Consensus 252 -~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 324 (406)
T PRK13393 252 -MGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG------IPHLP 324 (406)
T ss_pred -cCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC------CCcCC
Confidence 114578899988887654433 34567888999999999987653 234556778888888887752 22336
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+.|.++.+.+... ..+.++.+.|+++ ||++.+. +.+.+||+|++.+|++|+++++++|+++++ ++.
T Consensus 325 ~~~~i~~v~~~~~---~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~-~~~ 398 (406)
T PRK13393 325 NPSHIVPVMVGDP---VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWA-RLG 398 (406)
T ss_pred CCCCeEEEEeCCH---HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-hcC
Confidence 7788887755322 2567899999885 9998642 347899999999999999999999999998 754
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=291.63 Aligned_cols=331 Identities=19% Similarity=0.271 Sum_probs=251.3
Q ss_pred CCCeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~ 146 (470)
+|+++++|.++ |.+.. +||+|++++.+++++++..+. .++++.+.+|++.++++++.+.+++++||++||+
T Consensus 43 ~~~~~~~~~sn~ylgl~---~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~ 119 (402)
T TIGR01821 43 GAKDVTVWCSNDYLGMG---QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVAND 119 (402)
T ss_pred CCeeEEEeEccCcCCCC---CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHH
Confidence 46999999887 54433 799999999999998765432 1245678999999999999888999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~ 225 (470)
.+++++..+ ....+++.+..||++....+...+.+ ...++++|+++++++++... +++
T Consensus 120 ~ai~~l~~~---------~~~~~v~~~~~~h~s~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~~~~~~~ 178 (402)
T TIGR01821 120 ATLATLAKI---------IPGCVIFSDELNHASMIEGIRHSGAE------------KFIFRHNDVAHLEKLLQSVDPNRP 178 (402)
T ss_pred HHHHHhhCC---------CCCCEEEEcchHhHHHHHHHHHcCCe------------EEEECCCCHHHHHHHHHhccCCCC
Confidence 999987642 11245566666898887766554422 23567789999999997543 267
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCC--Cccee--eccccccCCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~--~pdi~--s~sK~l~gG~ 299 (470)
++|++|+++||+|.+.| +++|.++|++||++||+||+|+ | +|..|... .+++++ .+|++ +|||+++.
T Consensus 179 ~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~-- 251 (402)
T TIGR01821 179 KIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGV-- 251 (402)
T ss_pred eEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhcc--
Confidence 89999999999999998 9999999999999999999999 5 45665543 344554 36776 99999982
Q ss_pred cceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 300 IPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
..|++++++++++.+...... .+.+.++.+++++.++|+.+++ +.+.++.+++++++++.|++++ +..+.
T Consensus 252 -~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 324 (402)
T TIGR01821 252 -VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG------IPVIP 324 (402)
T ss_pred -CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC------CCcCC
Confidence 114588899998887643322 3445889999999999998876 3456667788899999888753 22233
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+.++.+.+... ..+.++++.|+++ ||++.+. +.+++|++|++.+|++|+++++++|+++++ ++
T Consensus 325 ~~~~i~~i~~~~~---~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~-~~ 397 (402)
T TIGR01821 325 NPSHIVPVIIGDA---ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWD-RL 397 (402)
T ss_pred CCCCEEEEEeCCH---HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence 4677777755432 2467899998755 9998642 347899999999999999999999999998 65
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=290.44 Aligned_cols=344 Identities=18% Similarity=0.250 Sum_probs=256.8
Q ss_pred hhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc---CCCCC--CCcHHHH
Q 012138 48 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS---SRAFY--NDKFPVF 122 (470)
Q Consensus 48 ~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~--~~~~~~l 122 (470)
++....|.+.+++..+++|.++||.+|+.||||. +||++++++.+++++++.. +..+. .+...+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~l 104 (407)
T PRK07179 35 ERVNKNWNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQF 104 (407)
T ss_pred HhhccCcCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHH
Confidence 3445567888999999999999999999999987 6899999999999876322 22222 2468899
Q ss_pred HHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC
Q 012138 123 AERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG 202 (470)
Q Consensus 123 ~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 202 (470)
++.|++++|.+.+++++||++|++.+++.+.. +++ .|++.... |..........+. .
T Consensus 105 e~~la~~~g~~~~~~~~sG~~An~~~l~~l~~---------~g~-~v~~~~~~-h~s~~~~~~~~g~------------~ 161 (407)
T PRK07179 105 EKKLAAFTGFESCLLCQSGWAANVGLLQTIAD---------PNT-PVYIDFFA-HMSLWEGVRAAGA------------Q 161 (407)
T ss_pred HHHHHHHhCCCcEEEECCHHHHHHHHHHHhCC---------CCC-EEEEECCc-CHHHHHHHHHCCC------------e
Confidence 99999999999999999999999999997754 455 55554443 5444333222211 1
Q ss_pred eeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccc
Q 012138 203 HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASD 280 (470)
Q Consensus 203 ~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~ 280 (470)
...++++|+++|+++++++ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+ | +|++|..+ +.
T Consensus 162 ~~~~~~~d~~~l~~~l~~~--~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~ 234 (407)
T PRK07179 162 AHPFRHNDVDHLRRQIERH--GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VA 234 (407)
T ss_pred EEEecCCCHHHHHHHHHhc--CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HH
Confidence 3456678999999999753 4788889999999999998 9999999999999999999998 2 45566543 34
Q ss_pred cCCCC--ccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCC--CCCHHHHHHHHHHHHHHhh-hhHHHHHHHH
Q 012138 281 WEEVR--PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF--GGNPLASAVAIASLDVIRD-EKLAERSAHL 353 (470)
Q Consensus 281 ~~~~~--pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~ 353 (470)
.+++. +|++ |++|++++ ++|++++++++++.+........+ +.++..++++.++++.+.. +..+++++++
T Consensus 235 ~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~ 311 (407)
T PRK07179 235 ELGLTSRVHFITASLAKAFAG---RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHAN 311 (407)
T ss_pred hcCCCCCCCEEEeechHhhhc---cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 45543 3765 67899864 789999999988776532111112 2345566667777887765 4578889999
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCcee----ccC---CCCEEEEecCCCCC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA----KPT---HDTIVRLTPPLSIS 426 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~----~~~---~~~~iR~~~~~~~t 426 (470)
++++++.|++++. .+.+.+.++.+.+... .....+.+.|.++||.+ .|. ..+++||+++..+|
T Consensus 312 ~~~l~~~L~~~g~-------~v~~~~~i~~l~~~~~---~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t 381 (407)
T PRK07179 312 ARFLREGLSELGY-------NIRSESQIIALETGSE---RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLT 381 (407)
T ss_pred HHHHHHHHHHcCC-------CCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCC
Confidence 9999999987521 1235677887766432 25677888999999973 333 25799999999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 012138 427 SNELQEGSKALHDVLELDL 445 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~~~~ 445 (470)
++|+++++++|+++++ +.
T Consensus 382 ~edi~~~~~~l~~~~~-~~ 399 (407)
T PRK07179 382 ASDLDRVLEVCREARD-EV 399 (407)
T ss_pred HHHHHHHHHHHHHHHH-hh
Confidence 9999999999999998 64
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=279.50 Aligned_cols=329 Identities=22% Similarity=0.333 Sum_probs=262.3
Q ss_pred CCEEEeCCCCeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeEEecC
Q 012138 66 GSSIWDPEGNKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMN 139 (470)
Q Consensus 66 g~~~~d~~G~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v~~~~ 139 (470)
+..++ .+|++++||+++ |.+.. .||++++++.+.+++++.+.. ..+.+.+.+|+++|++++|.+.+++++
T Consensus 31 ~~~~~-~~~~~~~nf~SNdYLGLa---~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~ 106 (388)
T COG0156 31 GLAIR-ADGRKVLNFCSNDYLGLA---SHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFS 106 (388)
T ss_pred Cccee-cCCceeEeeeccCccccc---CCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEc
Confidence 44444 558999999988 44433 799999999999998755432 235788999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
||..||..++..+.. .++.|+...-+ |.+...++.++... ...++|||+++||+.++
T Consensus 107 SGy~AN~~~i~~l~~----------~~dli~~D~ln-HASiidG~rls~a~------------~~~f~HnD~~~Le~~l~ 163 (388)
T COG0156 107 SGFVANLGLLSALLK----------KGDLIFSDELN-HASIIDGIRLSRAE------------VRRFKHNDLDHLEALLE 163 (388)
T ss_pred ccchhHHHHHHHhcC----------CCcEEEEechh-hhhHHHHHHhCCCc------------EEEecCCCHHHHHHHHH
Confidence 999999999998764 23355555555 99988888877633 46899999999999998
Q ss_pred hcC--C-CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCCCcc---e--e
Q 012138 220 ESG--D-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVRPD---M--V 289 (470)
Q Consensus 220 ~~~--~-~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~~pd---i--~ 289 (470)
++. . +.+.|++|.++++.|++.| |++|.++|++||++|++||+|+ | +|..|+++ .+++|+.++ + .
T Consensus 164 ~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~-~e~~g~~~~~vdi~~g 238 (388)
T COG0156 164 EARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGRGL-AEHFGLEPEEVDIIVG 238 (388)
T ss_pred hhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCccH-HHHhCCCCccceEEEE
Confidence 742 1 3578889999999999999 9999999999999999999999 5 67788876 566777543 3 3
Q ss_pred ecccccc--CCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH
Q 012138 290 ILGKALG--GGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 290 s~sK~l~--gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l 364 (470)
||||++| ||+ ++++..+++.+........|+ .+|..++++.++++.+++ ++.+++++++..++++.+...
T Consensus 239 TlsKAlGs~Gg~-----v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~ 313 (388)
T COG0156 239 TLGKALGSSGGY-----IAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313 (388)
T ss_pred EchhhhcccCce-----eeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 554 899999999998765555555 788888899999999886 678888999999888555543
Q ss_pred HhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+ +........++.+.+..+. .+.++...|+++||.+.+ .+...+|++++..+|+++|+.+++.|
T Consensus 314 ~------~~~~~s~s~I~pv~~gd~~---~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l 384 (388)
T COG0156 314 G------LVLLPSESPIIPVILGDEE---RALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEAL 384 (388)
T ss_pred C------CccCCCCCCeeeeEeCCHH---HHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHH
Confidence 2 2223445556666565543 788899999999999763 34678999999999999999999999
Q ss_pred HHH
Q 012138 438 HDV 440 (470)
Q Consensus 438 ~~~ 440 (470)
.++
T Consensus 385 ~~~ 387 (388)
T COG0156 385 SEV 387 (388)
T ss_pred Hhh
Confidence 875
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=286.27 Aligned_cols=330 Identities=20% Similarity=0.256 Sum_probs=249.6
Q ss_pred CCeEEeccCCcccccCCCC-CHHHHHHHHHHHHHccccCC---C--CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHC-HPKIMKALQEQAEKLTLSSR---A--FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~---~--~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~ 147 (470)
|++++||+++ +.+|+. ||++.+++.+++++++..+. . ++++.+.++++.|+++++.+..+++++|++|++.
T Consensus 45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ 121 (407)
T PRK09064 45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDA 121 (407)
T ss_pred CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHH
Confidence 6899999887 556664 89999999999988765421 1 2456789999999999998888889999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~ 226 (470)
+++++..+ .++ .+++.+..+|+.....+...+.+ ...++++|+++|+++++... ++++
T Consensus 122 ai~~l~~~--------~~~-~~i~~~~~~h~s~~~~~~~~~~~------------~~~~~~~d~~~le~~l~~~~~~~~~ 180 (407)
T PRK09064 122 TLSTLAKL--------IPD-CVIFSDELNHASMIEGIRRSRCE------------KHIFRHNDVAHLEELLAAADPDRPK 180 (407)
T ss_pred HHHHHhCC--------CCC-CEEEEeCcchHHHHHHHHHcCCc------------EEEECCCCHHHHHHHHHhccCCCCe
Confidence 99987642 122 34444444477665555443321 24677889999999997532 3688
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCC--Cccee--eccccccCCCc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGVI 300 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~--~pdi~--s~sK~l~gG~~ 300 (470)
+|++++++|++|.+.| +++|.++|++||++||+||+|+ | +|+.|..+ .++.++ .+|++ ||||+++.
T Consensus 181 ~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~--- 252 (407)
T PRK09064 181 LIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV--- 252 (407)
T ss_pred EEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc---
Confidence 9999999999999998 9999999999999999999998 6 68887665 455554 46877 99999972
Q ss_pred ceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 301 PVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
..|++++++++++.+...... .+.+.++.+++++.++++.+++. ..+++++++++++.+.|++++. ..+.+
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~------~~~~~ 326 (407)
T PRK09064 253 MGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAGI------PVMPN 326 (407)
T ss_pred cCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC------CCCCC
Confidence 124588899988877543222 24457888999999999988763 4567888899999999987532 22234
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHH-cCceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.++.+.+... ..+.++.++|++ +||++.+. +.+++|++|++.+|++|+++++++|+++++ ++
T Consensus 327 ~~~iv~i~~~~~---~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~-~~ 398 (407)
T PRK09064 327 ESHIVPVMVGDP---EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA-RL 398 (407)
T ss_pred CCCEEEEEeCCH---HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence 566766655432 257789999875 59998642 236899999999999999999999999998 65
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=280.17 Aligned_cols=346 Identities=22% Similarity=0.258 Sum_probs=256.4
Q ss_pred ccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHH
Q 012138 51 AHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAE 124 (470)
Q Consensus 51 ~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~ 124 (470)
+..|...| ++.+++|.++|+ +|++|||+.++ .++|+ ++|++++++.++++.+..... .++.+...++++
T Consensus 17 ~~~~~~~~-~~~~~~g~~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 91 (385)
T PRK05958 17 AGLYRSLR-PREGGAGRWLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEE 91 (385)
T ss_pred cCCCcccc-ccccCCCceeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHH
Confidence 44565564 478999999997 99999999987 35776 789999999999987543221 123456789999
Q ss_pred HHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCee
Q 012138 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 204 (470)
Q Consensus 125 ~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (470)
.++++++.+..+++++|++++..+++.+.. +|+ .|++..+. |+.......+.+.. ..
T Consensus 92 ~la~~~~~~~~i~~~~g~~~~~~~l~~~~~---------~gd-~V~~~~~~-~~~~~~~~~~~g~~------------~~ 148 (385)
T PRK05958 92 ELAEWFGAERALLFSSGYAANLAVLTALAG---------KGD-LIVSDKLN-HASLIDGARLSRAR------------VR 148 (385)
T ss_pred HHHHHhCCCcEEEECcHHHHHHHHHHHhCC---------CCC-EEEEeCcc-CHHHHHHHHhcCCc------------eE
Confidence 999999877888888999999887765533 455 66666655 66655554443321 24
Q ss_pred eecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCcccccc-
Q 012138 205 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDW- 281 (470)
Q Consensus 205 ~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~- 281 (470)
.++.+|+++++++++....++++++++++++++|.+.+ +++|.++|++||++||+||+|+ | +++.|..+ ...
T Consensus 149 ~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~-~~~~ 223 (385)
T PRK05958 149 RYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL-AAEA 223 (385)
T ss_pred EeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCch-HHhh
Confidence 55667999999999764334678889999999999887 9999999999999999999996 3 44445432 111
Q ss_pred -CCCCcc---eeeccccccCCCcceeEEEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 012138 282 -EEVRPD---MVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLG 354 (470)
Q Consensus 282 -~~~~pd---i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 354 (470)
....+| +.++||++++ +.|++++++++++.+... ....+.+.++++++++.++++.+++ +++.+++.+++
T Consensus 224 ~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~ 300 (385)
T PRK05958 224 GLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALI 300 (385)
T ss_pred CCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 222345 5699999963 337788998888776432 2223345788888888899988765 46888899999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISS 427 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~ 427 (470)
+++.+.|++++ +..+.+.|.++++.++.. .++.++++.|+++||.+.+. +.+++|++++..+++
T Consensus 301 ~~l~~~L~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~ 371 (385)
T PRK05958 301 ARLRAGLRALG------FQLMDSQSAIQPLIVGDN---ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTE 371 (385)
T ss_pred HHHHHHHHHcC------CCcCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCH
Confidence 99999988752 223356788888876432 26778999999999999752 246899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012138 428 NELQEGSKALHDVL 441 (470)
Q Consensus 428 e~i~~~~~~l~~~l 441 (470)
+++++++++|++++
T Consensus 372 ~~i~~~l~~l~~~~ 385 (385)
T PRK05958 372 ADIDRLLEALAEAL 385 (385)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=276.58 Aligned_cols=336 Identities=15% Similarity=0.149 Sum_probs=252.1
Q ss_pred CCeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~ 147 (470)
+++++||.++ |.+.. .||++++++.+.+++++.+.. ..+...+++|++.|+++++.+.+++++||..||..
T Consensus 101 ~r~~l~FsSndYLGL~---~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~ 177 (476)
T PLN02955 101 FKKLLLFSGNDYLGLS---SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMA 177 (476)
T ss_pred CceEEEeeccCccCCC---CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHH
Confidence 5789999987 54444 799999999999999876532 12456789999999999999999999999999999
Q ss_pred HHHHHHHhch--hcccCC-CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCC
Q 012138 148 ALKLARKWGY--VKKKFS-IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 148 al~~~~~~~~--~~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
++..+..... ...+.+ .++..+|+.+..-|.+...++.++....- ..++.++|||+++|++++++...+
T Consensus 178 ~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~--------a~~~~f~HND~~~Le~~L~~~~~~ 249 (476)
T PLN02955 178 AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGN--------VEVFVYRHCDMYHLNSLLSSCKMK 249 (476)
T ss_pred HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCC--------ceEEEeCCCCHHHHHHHHHhCCCC
Confidence 9987631000 000000 13445556666669998888776532100 124678999999999999876656
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCCCcce----eecccccc--
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVRPDM----VILGKALG-- 296 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~~pdi----~s~sK~l~-- 296 (470)
.++|++|+++++.|.+.| +++|.++|++||++||+||+|+ | +|.+|.+. .+++++.+|+ .||||++|
T Consensus 250 ~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~-~e~~g~~~di~ii~~TLsKA~G~~ 324 (476)
T PLN02955 250 RKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGV-AEEFNCEADVDLCVGTLSKAAGCH 324 (476)
T ss_pred ceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCCcH-HHHhCCCCCCcEEEEeCccchhcc
Confidence 688999999999999998 9999999999999999999998 3 56666664 5677776665 59999998
Q ss_pred CCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 297 GGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 297 gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
||+ +++++++++.++.......|+ .+|..++++.++++.+.. +..+++++++.+++++.+ .+ .
T Consensus 325 GGf-----i~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~~-----G~----~ 390 (476)
T PLN02955 325 GGF-----IACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKALS-----GV----D 390 (476)
T ss_pred Cce-----eecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-----CC----C
Confidence 665 889999998887655555554 556677778888888754 456677777777776631 11 1
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
....++.+.+..+. .+..+.++|+++||++.+ .+...+||+++..||++||++++++|.++.. ...
T Consensus 391 ---~~sPI~pI~ig~~~---~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~-~~~ 463 (476)
T PLN02955 391 ---ISSPIISLVVGNQE---KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLD-FDN 463 (476)
T ss_pred ---CCCCEEEEEeCCHH---HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHh-hhc
Confidence 12455666555443 778899999999999762 2356799999999999999999999999887 543
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=274.67 Aligned_cols=344 Identities=16% Similarity=0.212 Sum_probs=251.3
Q ss_pred CceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhh
Q 012138 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 57 ~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~ 130 (470)
.|.++.+++|.++| .+|++||||.++ ..+|+ ++|.+.+++.+++++...... ....+++.++++++++++
T Consensus 16 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~ 91 (385)
T TIGR01825 16 SIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFK 91 (385)
T ss_pred cccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHh
Confidence 68889999999999 999999999876 44677 899999999999886543211 124567899999999998
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCC
Q 012138 131 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 210 (470)
Q Consensus 131 ~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 210 (470)
+.+..+++++|++++..+++.+.. +|+ .|++..+. |+.....+.+.+.. ...+++.|
T Consensus 92 g~~~~i~~~sG~~a~~~a~~~~~~---------~gd-~vi~~~~~-~~~~~~~~~~~g~~------------~~~~~~~d 148 (385)
T TIGR01825 92 KTEAALVFQSGFNTNQGVLSALLR---------KGD-IVLSDELN-HASIIDGLRLTKAT------------KKIYKHAD 148 (385)
T ss_pred CCCcEEEECcHHHHHHHHHHHhCC---------CCC-EEEEEccc-cHHHHHHHHhcCCc------------eEEeCCCC
Confidence 877767777889999988887643 455 66666655 55554444333211 12344558
Q ss_pred HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCCcc
Q 012138 211 ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPD 287 (470)
Q Consensus 211 ~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~pd 287 (470)
++++++.+++.. .++++|++++++|++|.+.| +++|.++|++||+++|+||+|+. +++.|.. ...++++.+|
T Consensus 149 ~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~ 223 (385)
T TIGR01825 149 MDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG-TVHHFGLEDK 223 (385)
T ss_pred HHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCc-cHhhcCCCcC
Confidence 999999887643 36889999999999999998 99999999999999999999973 4444432 1223333333
Q ss_pred ----eeeccccccCCCcceeEEEecHHHHhhcCcCCccCC--CCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHH
Q 012138 288 ----MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST--FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQH 360 (470)
Q Consensus 288 ----i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t--~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~ 360 (470)
+.+|||++++ +.|++++++++++.+........ ...+++.++++.++++.+.+ .+..++++++++++.+.
T Consensus 224 ~~i~~~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~ 300 (385)
T TIGR01825 224 VDIQVGTLSKAIGV---VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAG 300 (385)
T ss_pred CcEEEEeccHHhhc---CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4699999962 44778899998888754322122 23567788888888887654 45778888889999998
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~i~~~ 433 (470)
|++++. ....+.+.++.+.+... .+..++++.|+++||.+.+ .+.+++|++|++.+++++++++
T Consensus 301 L~~~g~------~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~ 371 (385)
T TIGR01825 301 LGKLGY------DTGGSETPITPVVIGDE---KAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQA 371 (385)
T ss_pred HHHcCC------CCCCCCCCEEEEEECCH---HHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHH
Confidence 887532 12234455565544321 2567899999999998842 1347899999999999999999
Q ss_pred HHHHHHHHhccc
Q 012138 434 SKALHDVLELDL 445 (470)
Q Consensus 434 ~~~l~~~l~~~~ 445 (470)
+++|+++++ ++
T Consensus 372 ~~~l~~~~~-~~ 382 (385)
T TIGR01825 372 LDAYEKVGK-EL 382 (385)
T ss_pred HHHHHHHHH-Hh
Confidence 999999988 64
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=274.14 Aligned_cols=350 Identities=19% Similarity=0.269 Sum_probs=253.9
Q ss_pred CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccC--CC---CCCCcHHHHHHHH
Q 012138 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSS--RA---FYNDKFPVFAERL 126 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~--~~---~~~~~~~~l~~~l 126 (470)
...+.|..+.++.|.++++.+|+++|||.++ ..+|+ .+|++++++.++++..+..+ .. ...+.+.++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~i 92 (393)
T TIGR01822 16 GLFKSERIITSPQGADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKI 92 (393)
T ss_pred CCCCcccccccCCCceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHH
Confidence 3344677788999999999899999999988 44555 48999999999998753321 11 1234568899999
Q ss_pred hhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeee
Q 012138 127 TSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV 206 (470)
Q Consensus 127 ~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (470)
+++++.+.+++++||++|+..++..+.. +|+ .|++..+.|+. ....+.+.+.. ...+
T Consensus 93 a~~~g~~~~ii~~~~~~a~~~~~~~l~~---------~gd-~vi~~~~~~~s-~~~~~~~~~~~------------~~~~ 149 (393)
T TIGR01822 93 AAFLGTEDTILYASCFDANGGLFETLLG---------AED-AIISDALNHAS-IIDGVRLCKAK------------RYRY 149 (393)
T ss_pred HHHhCCCcEEEECchHHHHHHHHHHhCC---------CCC-EEEEeccccHH-HHHHHHhcCCc------------eEEe
Confidence 9999988888889999999988876643 465 67777777543 33333322211 1344
Q ss_pred cCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCcccccc
Q 012138 207 DFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLASDW 281 (470)
Q Consensus 207 ~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~~~ 281 (470)
+++|+++|++.+++. +.++++|++++++|++|.+.| +++|.++|++||++||+||+|+ |+ +..|... .+.
T Consensus 150 ~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~-~~~ 224 (393)
T TIGR01822 150 ANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRGS-HEL 224 (393)
T ss_pred CCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-HHh
Confidence 567999999999863 126888999989999999998 9999999999999999999996 42 3333321 122
Q ss_pred CCC--Cccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 012138 282 EEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD-EKLAERSAHLG 354 (470)
Q Consensus 282 ~~~--~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 354 (470)
.++ .+|++ ++||+++| + ++|++++++++++.+........++ .++..++++.++++.++. +++++++++++
T Consensus 225 ~~~~~~~di~~~s~sK~l~g-~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 302 (393)
T TIGR01822 225 CGVMGRVDIITGTLGKALGG-A-SGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANT 302 (393)
T ss_pred cCCCCCCeEEEEEChHHhhC-C-CcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 332 34665 88999875 5 8999999999988776432222333 356666777888887654 56788899999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISS 427 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~ 427 (470)
+++.+.|++++ +....+.+.++.+.+... ..+.++++.|.++||.+... +...+|++++..+|+
T Consensus 303 ~~l~~~L~~~g------~~~~~~~~~~~~i~~~~~---~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~ 373 (393)
T TIGR01822 303 RYFRERMEAAG------FDIKPADHPIIPVMLYDA---VLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTE 373 (393)
T ss_pred HHHHHHHHHcC------CCCCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCH
Confidence 99999887742 111223455555544322 25778999999999988621 235799999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 012138 428 NELQEGSKALHDVLELDL 445 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~ 445 (470)
++|++++++|.++++ ++
T Consensus 374 edi~~~~~~l~~~~~-~~ 390 (393)
T TIGR01822 374 EQLDRAVEAFTRIGR-EL 390 (393)
T ss_pred HHHHHHHHHHHHHHH-Hh
Confidence 999999999999887 54
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=275.22 Aligned_cols=333 Identities=17% Similarity=0.246 Sum_probs=247.0
Q ss_pred EeccCC-cccccCCCCCHHHHHHHHHHHHHccccC---CCC--CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHH
Q 012138 78 LDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSS---RAF--YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 78 lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~ 151 (470)
|||.++ |.+.. .||++++++.+++++++.++ +.+ ....+.+|+++++++++.+..+++++|+.|+..++..
T Consensus 1 ~~f~s~dyLgl~---~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~ 77 (392)
T PLN03227 1 LNFATHDFLSTS---SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAA 77 (392)
T ss_pred CCCcCcCccCCC---CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHH
Confidence 356554 44333 78999999999998865443 222 2346889999999999988999999999999988877
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc----------
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---------- 221 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---------- 221 (470)
+.+ +|+ .|++.+.. |+++...+.+.. ..+..++|+|++++++.++..
T Consensus 78 l~~---------~GD-~Vl~~~~~-h~s~~~~~~l~~------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~ 134 (392)
T PLN03227 78 FAK---------RGD-LLVVDRGV-NEALLVGVSLSR------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRK 134 (392)
T ss_pred hCC---------CCC-EEEEeccc-cHHHHHHHHHcC------------CeEEEeCCCCHHHHHHHHHHhhhhccccccc
Confidence 643 455 77777777 555554433332 123567888888888766432
Q ss_pred -CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc--CCcccCCccccccCCCCc----ceeecccc
Q 012138 222 -GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLASDWEEVRP----DMVILGKA 294 (470)
Q Consensus 222 -~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~--g~g~~G~~~~~~~~~~~p----di~s~sK~ 294 (470)
..++++|++|+++|++|.+.| +++|+++|++||+++|+||+|+ .+|++|+ +..+++++.| |++++|++
T Consensus 135 ~~~~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls 209 (392)
T PLN03227 135 PTDQRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE 209 (392)
T ss_pred cCCCcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech
Confidence 135789999999999999998 9999999999999999999998 3566666 4578899988 98876643
Q ss_pred ccCCCcceeEEEecHHHHhhcCcCCccCCCCCC--HHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 295 LGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN--PLASAVAIASLDV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 295 l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~-~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
-+.|. ..|++++++++++.++...++.+|+++ |+.++++.++++. ++++++.++++++++++++.|++. .+| .
T Consensus 210 k~~g~-~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~--~~~-~ 285 (392)
T PLN03227 210 NAFGS-VGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS--SHP-Y 285 (392)
T ss_pred hhhhc-cCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCc-c
Confidence 33333 556788999998877666677788765 7777777777755 455779999999999999999872 333 4
Q ss_pred eEEEec--------cceeEEEEeccCCCc------hhHHHHHHHHHHcCceeccC-----------CCCEEEEecCCCCC
Q 012138 372 VKEVRG--------RGLFNAVEFDKTALP------VSAYDICLKMKERGILAKPT-----------HDTIVRLTPPLSIS 426 (470)
Q Consensus 372 ~~~~~~--------~g~~~~~~~~~~~~~------~~~~~~~~~l~~~Gv~~~~~-----------~~~~iR~~~~~~~t 426 (470)
+.++++ .|.++.+++...... ....++++.|+++|+++.+. .+..+|++++..+|
T Consensus 286 ~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t 365 (392)
T PLN03227 286 ALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHT 365 (392)
T ss_pred ccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCC
Confidence 555555 355788877442100 01358899999999988532 14568999999999
Q ss_pred HHHHHHHHHHHHHHHhcccC
Q 012138 427 SNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~~~~~ 446 (470)
+|||++++++|+++++ ++.
T Consensus 366 ~eei~~~~~~l~~~~~-~~~ 384 (392)
T PLN03227 366 REDIDKLLTVLGEAVE-AIL 384 (392)
T ss_pred HHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999998 753
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=273.31 Aligned_cols=336 Identities=18% Similarity=0.199 Sum_probs=252.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc--ccCCCCCCCcHHHHHHHHhhhhC----CCe-EEecCChhHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT--LSSRAFYNDKFPVFAERLTSMFG----YDM-VLPMNTGAEGVET 147 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~----~~~-v~~~~sGteA~~~ 147 (470)
..+||+..| .+....++.+.+++.+++.... +++.....++++.+++++.+.++ .++ |++|+|+++|+..
T Consensus 28 ~~vi~l~iG---~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIG---EPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCC---CCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 468888888 4555588999999999998763 33333456677888888887765 234 9999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC--CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP--GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
++.++.. +|| .|++.+|.|..........++.+... ++.. +.+.. |+++|++++++ +|
T Consensus 105 ~~~a~~~---------pGD-eVlip~P~Y~~y~~~~~~~gg~~v~v----~l~~~~~~f~~---d~~~l~~~i~~---kt 164 (393)
T COG0436 105 AFLALLN---------PGD-EVLIPDPGYPSYEAAVKLAGGKPVPV----PLDEEENGFKP---DLEDLEAAITP---KT 164 (393)
T ss_pred HHHHhcC---------CCC-EEEEeCCCCcCHHHHHHhcCCEEEEE----eCCcCccCCcC---CHHHHHhhcCc---cc
Confidence 9998876 566 68889999966655554444433221 1100 11222 89999999987 89
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccc-cccCC---CCcceeecccccc-CCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLA-SDWEE---VRPDMVILGKALG-GGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~-~~~~~---~~pdi~s~sK~l~-gG~ 299 (470)
++|+++.++||||.++ +++++++|+++|++||++||+||+|.+|.+.|. ... .+..+ ....+-+|||.++ .|+
T Consensus 165 k~i~ln~P~NPTGav~-~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGw 243 (393)
T COG0436 165 KAIILNSPNNPTGAVY-SKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGW 243 (393)
T ss_pred eEEEEeCCCCCcCcCC-CHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccccccc
Confidence 9999877799999999 999999999999999999999999999988884 321 22221 1122348999999 899
Q ss_pred cceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 300 IPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 300 ~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
|+||++++ +++++.+.......+++.+.+++.++.++|+.-++ +..++.++++++.+.+.|.++. .+..
T Consensus 244 -RvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~-----g~~~ 317 (393)
T COG0436 244 -RIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIG-----GLSV 317 (393)
T ss_pred -ceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcC-----Ceee
Confidence 99999998 88888876555666778899999999999985421 3344567778888888887752 3555
Q ss_pred Ee-ccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 375 VR-GRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 375 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.. +.|.|+.| ++.+. ..++.+|+.+|+++ ||.+.|+. .+++||+ +..+++++++++++|.+++. ..
T Consensus 318 ~~~p~Ga~Y~~-~~i~~-~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~-~~ 392 (393)
T COG0436 318 VKPPEGAFYLF-PKIPE-LLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLA-EY 392 (393)
T ss_pred ccCCCeeEEEE-eecCC-CCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHH-hc
Confidence 55 77888888 33332 13788999999877 89999862 4799999 77888999999999999987 53
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=271.16 Aligned_cols=345 Identities=19% Similarity=0.254 Sum_probs=250.5
Q ss_pred ceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhC
Q 012138 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFG 131 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~ 131 (470)
+..+++++|.++||.+|+.+|||.++ .++|+ .+|++.+++.++++...+... ....+++.+++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g 101 (397)
T PRK06939 25 ERVITSPQGADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG 101 (397)
T ss_pred cccccCCCCceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC
Confidence 45678999999999999999999886 33566 689999999999987543221 1234677899999999988
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCH
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI 211 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (470)
.+..+++++|++++..+++.+.. +|+ .|++.++.|.+..... ...+. ....++++|+
T Consensus 102 ~~~~i~~tsG~~a~~~~~~~l~~---------~gd-~vi~~~~~~~~~~~~~-~~~~~------------~~~~~~~~d~ 158 (397)
T PRK06939 102 TEDAILYSSCFDANGGLFETLLG---------KED-AIISDALNHASIIDGV-RLCKA------------KRYRYANNDM 158 (397)
T ss_pred CCcEEEEcChHHHHHHHHHHhCC---------CCC-EEEEEhhhhHHHHHHH-HhcCC------------ceEEeCCCCH
Confidence 76666666679999998876643 455 7888888865443322 22111 1244556799
Q ss_pred HHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCccccccCCC--
Q 012138 212 TALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEV-- 284 (470)
Q Consensus 212 ~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~~~~~~-- 284 (470)
+++++.+++. +.++++|++++++|++|.+.+ +++|.++|++||++||+||+|+ |+ +..|.. .....++
T Consensus 159 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~ 233 (397)
T PRK06939 159 ADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMD 233 (397)
T ss_pred HHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCC
Confidence 9999988752 236788888889999999877 9999999999999999999996 43 333332 1222333
Q ss_pred Cccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCC--CCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Q 012138 285 RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF--GGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQ 359 (470)
Q Consensus 285 ~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~ 359 (470)
.+|++ +|||+++| . ++||+++++++++.+........+ +.++..++++.++++.+.+ ++++++++++++++.+
T Consensus 234 ~~~i~~~S~sK~~~g-~-r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 311 (397)
T PRK06939 234 RVDIITGTLGKALGG-A-SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE 311 (397)
T ss_pred CCcEEEEECHHHhCc-c-CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34666 99999964 4 899999999998887643222222 2456667777788887754 4678888889999999
Q ss_pred HHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~ 432 (470)
.|++++. ....+.+.++.+.+... .+..++++.|.++||.+.+. +.+++|++++..++++++++
T Consensus 312 ~L~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~ 382 (397)
T PRK06939 312 GMTAAGF------TLGPGEHPIIPVMLGDA---KLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDR 382 (397)
T ss_pred HHHHcCC------CcCCCCCCEEEEEECCH---HHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHH
Confidence 8877521 12234566665544321 25778999999999988642 24689999988899999999
Q ss_pred HHHHHHHHHhccc
Q 012138 433 GSKALHDVLELDL 445 (470)
Q Consensus 433 ~~~~l~~~l~~~~ 445 (470)
++++|+++++ ++
T Consensus 383 ~l~~L~~~~~-~~ 394 (397)
T PRK06939 383 AIDAFEKVGK-EL 394 (397)
T ss_pred HHHHHHHHHH-Hh
Confidence 9999999988 65
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=263.41 Aligned_cols=332 Identities=20% Similarity=0.269 Sum_probs=241.0
Q ss_pred CCCeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCC---CC--CCCcHHHHHHHHhhhhCCCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSR---AF--YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~--~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~ 146 (470)
+|+++++|.++ |.+ ++ +||++++++.++++.++.... .+ ..+.+.+|++++++++|.+..++++||++|+.
T Consensus 44 ~~~~~~~~~sn~yl~--l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~ 120 (410)
T PRK13392 44 GPRRVTIWCSNDYLG--MG-QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSND 120 (410)
T ss_pred CCceEEEEECCCccC--CC-CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHH
Confidence 47889999876 433 33 789999999999988765321 12 23368899999999999888888889999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~ 225 (470)
.++..+... .+++ .|+. +..+|++........+.. +..++++|.+++++.+++.. +++
T Consensus 121 ~~i~~l~~~-------~~g~-~vi~-~~~~h~s~~~~~~~~g~~------------~~~~~~~d~~~l~~~l~~~~~~~t 179 (410)
T PRK13392 121 AALSTLGKL-------LPGC-VILS-DALNHASMIEGIRRSGAE------------KQVFRHNDLADLEEQLASVDPDRP 179 (410)
T ss_pred HHHHHHhcC-------CCCC-EEEE-ehhhhHHHHHHHHHcCCe------------EEEEeCCCHHHHHHHHHhccCCCC
Confidence 999855421 0343 4444 445687776655444321 23456778888988887543 478
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCC--Cccee--eccccccCCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~--~pdi~--s~sK~l~gG~ 299 (470)
++|++++++||+|.+.| +++|.++|++||+++|+||+|+ | +|..|..+ .++.++ .+|++ +|||+++.
T Consensus 180 ~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~-- 252 (410)
T PRK13392 180 KLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC-- 252 (410)
T ss_pred EEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc--
Confidence 89999999999999998 9999999999999999999999 5 45665544 233333 35665 99999873
Q ss_pred cceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 300 IPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
..|++++++++++.++..... .+.+.++++++++.++|+.++. ....++++++++++++.|++++ +....
T Consensus 253 -~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 325 (410)
T PRK13392 253 -LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANG------IPVMP 325 (410)
T ss_pred -ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC------CCCCC
Confidence 225678899998866543322 2344677888999999987765 3355667788888888887753 22224
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+.+.++.+.+..+ ....+++++|+ ++||++.+. +..++|++++..+|++|+++++++|.++++ ++.
T Consensus 326 ~~~~~~~i~~~~~---~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~-~~~ 399 (410)
T PRK13392 326 SPSHIVPVMVGDP---TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWD-RLE 399 (410)
T ss_pred CCCCEEEEEeCCH---HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-HcC
Confidence 5666665545422 24678999987 579998753 246899999999999999999999999988 653
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=254.08 Aligned_cols=334 Identities=19% Similarity=0.255 Sum_probs=239.9
Q ss_pred EEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCe
Q 012138 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDM 134 (470)
Q Consensus 61 ~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~ 134 (470)
+.++.|.++. .+|++||||.++ .++|+ .||++++++.++++.+..... ..+.+...++++.++++++.+.
T Consensus 3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~ 78 (360)
T TIGR00858 3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEA 78 (360)
T ss_pred cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCC
Confidence 3678899998 799999999998 56885 789999999999987543211 1124567789999999888766
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 214 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 214 (470)
.+++++|++++..+++.+.. +|+ .|++..+. |..........+. .+..++..|+++|
T Consensus 79 ~i~~~~G~~~~~~~l~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~------------~~~~~~~~d~~~l 135 (360)
T TIGR00858 79 ALLFSSGYLANVGVISALVG---------KGD-LILSDALN-HASLIDGCRLSGA------------RVRRYRHNDVEHL 135 (360)
T ss_pred EEEECchHHHHHHHHHHhCC---------CCC-EEEEEccc-cHHHHHHHHhcCC------------ceEEecCCCHHHH
Confidence 77777788888877776533 455 67767666 4444333333221 1234555699999
Q ss_pred HHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCCcc----
Q 012138 215 EKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPD---- 287 (470)
Q Consensus 215 e~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~pd---- 287 (470)
++.+++.. .++++|++++++|++|.+.+ +++|.++|++||++||+||+|+. ++..+... ...+++.++
T Consensus 136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~~~i 210 (360)
T TIGR00858 136 ERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGT-LEHFGLKPEPVDI 210 (360)
T ss_pred HHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECcccccCcCCCCCch-HHhcCCCccCCcE
Confidence 99997642 35788888888999999987 99999999999999999999972 22222211 223344333
Q ss_pred -eeeccccccCCCcceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHH
Q 012138 288 -MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 288 -i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~ 363 (470)
+.+|||++++ +.|++++++++++.+...... .+.+.++.+++++.++++.+.. +++.++++++++++.+.|++
T Consensus 211 ~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~ 287 (360)
T TIGR00858 211 QVGTLSKALGS---YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEA 287 (360)
T ss_pred EEEechhhhhc---cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 5699999974 337889999988876432222 2234667777888888887654 46788899999999999987
Q ss_pred HHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 364 IQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 364 l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
+. +....+.+.++++.+... .+..++.++|.++||++.+. +.+++|++++..++++++++++++
T Consensus 288 ~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~ 358 (360)
T TIGR00858 288 LG------FTLMPSCTPIVPVIIGDN---ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEA 358 (360)
T ss_pred cC------CccCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHh
Confidence 52 222234566777765432 25778999999999999642 246899999999999999999998
Q ss_pred HH
Q 012138 437 LH 438 (470)
Q Consensus 437 l~ 438 (470)
|+
T Consensus 359 l~ 360 (360)
T TIGR00858 359 LK 360 (360)
T ss_pred hC
Confidence 73
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=233.22 Aligned_cols=354 Identities=18% Similarity=0.252 Sum_probs=259.1
Q ss_pred EeecCCEEEeCCC-CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEE
Q 012138 62 SQAKGSSIWDPEG-NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVL 136 (470)
Q Consensus 62 ~~~~g~~~~d~~G-~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~ 136 (470)
+++..+..||..+ ++ |...-|.+.+....+|.|.+|+.+.++..-+++.....++..++.+|.++.+++ +.++
T Consensus 10 r~~t~s~KWd~~~g~~--DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~ 87 (388)
T COG1168 10 RLGTNSLKWDAHPGNE--DVLPMWVADMDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIV 87 (388)
T ss_pred hcCCCceeccccCCCC--CcceeeeecccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEE
Confidence 4567788898765 22 555556677788899999999999999876655423344778899999988753 5699
Q ss_pred ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHH
Q 012138 137 PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 216 (470)
Q Consensus 137 ~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 216 (470)
|+++.--++..+++.+.+ +|+ .|++..|.|+-. ...+...+......+... ..+.+.+ |.++||+
T Consensus 88 ~~p~VVpgi~~~I~~~T~---------~gd-~Vvi~tPvY~PF-~~~i~~n~R~~i~~pL~~-~~~~y~i---D~~~LE~ 152 (388)
T COG1168 88 FVPGVVPGISLAIRALTK---------PGD-GVVIQTPVYPPF-YNAIKLNGRKVIENPLVE-DDGRYEI---DFDALEK 152 (388)
T ss_pred EcCcchHhHHHHHHHhCc---------CCC-eeEecCCCchHH-HHHHhhcCcEEEeccccc-cCCcEEe---cHHHHHH
Confidence 999999999999998865 566 677777777432 122222222211111111 1223555 9999999
Q ss_pred HHHhcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC-CccccccC-----CCCccee
Q 012138 217 IFKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG-RMLASDWE-----EVRPDMV 289 (470)
Q Consensus 217 ~l~~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G-~~~~~~~~-----~~~pdi~ 289 (470)
++.+. ++++++ |+| |||+|.+. ++++|.+|.++|.+||+++|+||+|+.+...| +.+.+... +....++
T Consensus 153 ~~~~~--~vkl~iLCnP-HNP~Grvw-t~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~ 228 (388)
T COG1168 153 AFVDE--RVKLFILCNP-HNPTGRVW-TKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLT 228 (388)
T ss_pred HHhcC--CccEEEEeCC-CCCCCccc-cHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEe
Confidence 99873 556666 999 99999999 99999999999999999999999999987777 33322211 1111234
Q ss_pred ecccccc-CCCcceeEEE-ecHHHHhhcCc-CCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHH
Q 012138 290 ILGKALG-GGVIPVSAVL-ADKEVMLCIQP-GEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 290 s~sK~l~-gG~~~ig~v~-~~~~~~~~~~~-~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l 364 (470)
+-||++. +|+ .++.++ .++++..++.. .......+.|.+++.|..++++.-+. +++.+.++.+.+++.+.+++.
T Consensus 229 saSKtFNlaGL-~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~ 307 (388)
T COG1168 229 SASKTFNLAGL-KCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH 307 (388)
T ss_pred eccccccchhh-hheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5579998 788 888766 56665444432 22234445789999999999886554 668888888888888887764
Q ss_pred HhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.| .+....++|.++.| ++....+.+..++.+.|+++ +|.+.+| +.+++|+. +..+++-+++++++|
T Consensus 308 ---~P-~v~v~~p~gTYL~W-LD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri 380 (388)
T COG1168 308 ---LP-GVKVTEPQGTYLAW-LDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAILEEALERL 380 (388)
T ss_pred ---CC-CcEEecCCCceeee-eeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHH
Confidence 33 67888999999999 77766556677889988877 8888765 46899999 889999999999999
Q ss_pred HHHHhccc
Q 012138 438 HDVLELDL 445 (470)
Q Consensus 438 ~~~l~~~~ 445 (470)
..+++ .+
T Consensus 381 ~~al~-~~ 387 (388)
T COG1168 381 KRALK-KR 387 (388)
T ss_pred HHHHh-cc
Confidence 99987 54
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=229.12 Aligned_cols=323 Identities=19% Similarity=0.274 Sum_probs=253.8
Q ss_pred ccCCcccccCCCCCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHH
Q 012138 80 FLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 80 ~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~ 154 (470)
|+..|.+.+ .||+|.+|+.+.+++++.+.+ ...+..+.+|++.|+++.+.+..++++|..-||...+..+.+
T Consensus 177 CSNDYLgms---~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak 253 (570)
T KOG1360|consen 177 CSNDYLGMS---RHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAK 253 (570)
T ss_pred ecCcccccc---CChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHH
Confidence 333354444 899999999999998765432 235667899999999999999999999999999998885543
Q ss_pred hchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC-CeEEEEEccc
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPI 233 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~-~~~~vi~epi 233 (470)
- -.+-+|.+..+. |.++...+.-++.+. ..|+|||+++|++++++.+. .++.|-+|.+
T Consensus 254 ~--------lpgcei~SD~gN-HASMI~GIrns~v~K------------~IFrHND~~hL~~lL~~~~~svPKivAFEtV 312 (570)
T KOG1360|consen 254 K--------LPGCEIFSDEGN-HASMIQGIRNSRVPK------------HIFRHNDLDHLEQLLQSSPKSVPKIVAFETV 312 (570)
T ss_pred H--------CCCcEEeccccc-hHHHHHHhhhcCCcc------------eeeccCCHHHHHHHHHhCCCCCCceEEEeee
Confidence 1 134477777776 888877776655432 58899999999999988653 5677779999
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCCC--ccee--ecccccc--CCCcceeEE
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVR--PDMV--ILGKALG--GGVIPVSAV 305 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~~--pdi~--s~sK~l~--gG~~~ig~v 305 (470)
++++|.+.| +++|.+++++||++-++||||+ | +|..|.+. -+..|+. .||+ +++|++| ||| |
T Consensus 313 hSM~Gavcp----leelcDvah~yGAiTFlDEVHAVGlYG~rGaGv-gerdGvm~kvDiIsGTLgKafGcVGGY-----I 382 (570)
T KOG1360|consen 313 HSMDGAVCP----LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGV-GERDGVMHKVDIISGTLGKAFGCVGGY-----I 382 (570)
T ss_pred eccCCCcCC----HHHHHHHHHHhCceeeeehhhhhccccCCCCCc-cccCCcchhhhhcccchhhhcccccce-----e
Confidence 999999999 9999999999999999999999 6 44555443 3556663 4666 8999999 776 8
Q ss_pred EecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 306 LADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 306 ~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
.++..++|.++.+..+..|+ .+|.-++.|+++.+++..+ .+++.-+++..++++.|.+++ +..++....
T Consensus 383 Aat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~G------iPVi~~pSH 456 (570)
T KOG1360|consen 383 AATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELG------IPVIPNPSH 456 (570)
T ss_pred hhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcC------CcccCCCcc
Confidence 89999999999877776664 7888899999999988753 366666777888888887753 445566667
Q ss_pred eEEEEeccCCCchhHHHHHHHHHHc-Cceec-------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 381 FNAVEFDKTALPVSAYDICLKMKER-GILAK-------PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~-------~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++.+.+.... .+..+++.|..+ ||++. +.+...+|+.|...+|++-++.+++.|.++++ ++.
T Consensus 457 IiPv~vgda~---l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~-~v~ 526 (570)
T KOG1360|consen 457 IIPVRVGDAA---LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWN-EVG 526 (570)
T ss_pred eeeeeccCHH---HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHH-HcC
Confidence 7777666543 677888888877 99875 33577899999999999999999999999998 654
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-29 Score=246.71 Aligned_cols=333 Identities=13% Similarity=0.116 Sum_probs=227.5
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHc-c-ccCCCCCCCcHHHHHHHHhhhhCC----C-eEEecCChhHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-T-LSSRAFYNDKFPVFAERLTSMFGY----D-MVLPMNTGAEGVETAL 149 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~----~-~v~~~~sGteA~~~al 149 (470)
+++|..+.... + .++.+.+++.+.++.. . +.+.....++++++++++.+.+|. + +|++|+|+++|+..++
T Consensus 22 ~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~ 98 (378)
T PRK07682 22 VISLGVGEPDF--V-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAM 98 (378)
T ss_pred eEEeCCCCCCC--C-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH
Confidence 57787775432 2 5677888888877642 1 212233455677777777765442 3 7999999999999998
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
+.+.. +|+ .|++.+++|+.........+.. .... +... +...+ |+++|++++.+ +++++
T Consensus 99 ~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~~---~~~~~~~~~~---d~~~l~~~~~~---~~~~v 158 (378)
T PRK07682 99 RAIIN---------PGD-EVLIVEPSFVSYAPLVTLAGGV-PVPV---ATTLENEFKV---QPAQIEAAITA---KTKAI 158 (378)
T ss_pred HHhCC---------CCC-EEEEeCCCchhhHHHHHHcCCE-EEEe---ecCCccCCCC---CHHHHHhhcCc---ccEEE
Confidence 87754 455 8888999987554333222221 1100 1000 01122 78999988865 67777
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCCCC---cceeecccccc-CCCccee
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVR---PDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~~~---pdi~s~sK~l~-gG~~~ig 303 (470)
++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|.+.+....+ ...+.. ..+.+|||.++ +|+ |+|
T Consensus 159 ~~~~p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R~G 236 (378)
T PRK07682 159 LLCSPNNPTGAVL-NKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGW-RLG 236 (378)
T ss_pred EEECCCCCcCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhh-hhh
Confidence 6444499999999 8999999999999999999999999987665542211 111211 12459999998 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
|+++++++++.+........++.+.+++.++.++|+..+. +.++++++++++.+.+.|++++ +....+.|.+
T Consensus 237 ~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~------~~~~~p~g~~ 310 (378)
T PRK07682 237 FIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIG------LTCHVPGGAF 310 (378)
T ss_pred hhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHCC------CccCCCCeeE
Confidence 9999999999886544344566788888888777753211 3455666777777777777642 3334566666
Q ss_pred EEEE-eccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 382 NAVE-FDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 382 ~~~~-~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.|. +.... .+..++++.|+ ++||.+.|+. .+++|++. ..+++++++++++|+++++ ++
T Consensus 311 ~~~~~~~~~~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~l~-~~ 377 (378)
T PRK07682 311 YAFPSISSTG--LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSY--ATSLEQLQEAMKRMKRFVE-NK 377 (378)
T ss_pred EEEEeccCCC--CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHh-hc
Confidence 6663 32211 25678898876 6799998762 58999995 4579999999999999988 54
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-28 Score=246.22 Aligned_cols=332 Identities=15% Similarity=0.156 Sum_probs=238.2
Q ss_pred CCCCeEEeccCCcccccCCC--CCHHHHHHHHHHHHHcccc---CC--CCCCCcHHHHHHHHhhhhCCCeEEecCChhHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGH--CHPKIMKALQEQAEKLTLS---SR--AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEG 144 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~---~~--~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA 144 (470)
..++++|||.++ +.||. +++...+++.+++++++.. ++ ....+.+.++++.+++++|.+..+++++|+.+
T Consensus 97 ~~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~a 173 (489)
T PLN02483 97 TKTRRCLNLGSY---NYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYAT 173 (489)
T ss_pred CCCceEEEeecC---CccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHH
Confidence 457899999886 33444 4677888888888887643 22 12456789999999999998877777889999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC--
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-- 222 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-- 222 (470)
+..++..+.. +|+ .|++.+++|++ ........+. .+..++++|+++|++++++.-
T Consensus 174 n~~~i~al~~---------~Gd-~Vi~d~~~h~s-~~~~~~~~Ga------------~v~~~~~~d~~~le~~l~~~i~~ 230 (489)
T PLN02483 174 NSTIIPALIG---------KGG-LIISDSLNHNS-IVNGARGSGA------------TIRVFQHNTPSHLEEVLREQIAE 230 (489)
T ss_pred HHHHHHHhCC---------CCC-EEEEcchhhHH-HHHHHHHcCC------------eEEEEeCCCHHHHHHHHHhhhhc
Confidence 9887776644 465 77778877544 4433333331 245778889999988876420
Q ss_pred --CC------eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCCCc---cee
Q 012138 223 --DQ------IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVRP---DMV 289 (470)
Q Consensus 223 --~~------~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~~p---di~ 289 (470)
++ ..+|++|++.+++|.+.+ +++|.++|++||++||+||+|+ | +|++|+.. .+++++.| |++
T Consensus 231 ~~p~t~~p~~k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~-~~~~~v~~~~~dI~ 305 (489)
T PLN02483 231 GQPRTHRPWKKIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGV-CELLGVDPADVDIM 305 (489)
T ss_pred cccccccCCceEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCch-HHhcCCCcccCcEE
Confidence 11 236679999999999998 9999999999999999999998 3 55666553 34455433 555
Q ss_pred --eccccccCCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHH
Q 012138 290 --ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD-------EKLAERSAHLGEELR 358 (470)
Q Consensus 290 --s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~-------~~~~~~~~~~~~~l~ 358 (470)
||||++++ ..|++++++++++.++....+.+++ .++..++++.++|+.+.. .+.+++++++.++++
T Consensus 306 ~~SfSKs~g~---~GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~ 382 (489)
T PLN02483 306 MGTFTKSFGS---CGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFR 382 (489)
T ss_pred EEecchhccc---CceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH
Confidence 99999973 3367999999999987654444443 466777777788886642 235667888888888
Q ss_pred HHHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i 430 (470)
+.|++++ +.... ..+.+.++.+... .+..++++.|+++||.+.+. ..+.+||+++..+|+|+|
T Consensus 383 ~~L~~~G------~~v~~~~~sp~~~l~l~~~---~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edI 453 (489)
T PLN02483 383 SELQKMG------FEVLGDNDSPVMPIMLYNP---AKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDL 453 (489)
T ss_pred HHHHHCC------CcccCCCCCCEEEEEECCH---HHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHH
Confidence 8888752 11111 2233444433332 25668999999999998742 236899999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 012138 431 QEGSKALHDVLELDLPK 447 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~~ 447 (470)
++++++|+++++ .+.-
T Consensus 454 d~~l~~L~~~~~-~~~~ 469 (489)
T PLN02483 454 IKALEVISEVGD-LVGI 469 (489)
T ss_pred HHHHHHHHHHHH-HhCc
Confidence 999999999988 6643
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=246.81 Aligned_cols=333 Identities=15% Similarity=0.172 Sum_probs=228.0
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc--ccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT--LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~a 148 (470)
.++||..|.+..+ .++.+.+++.+.++... +.......++++.+++++.+..+ .+ +|++|+|+++|+..+
T Consensus 55 ~~i~l~~G~P~~~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 131 (413)
T PLN00175 55 GAINLGQGFPNFD---GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131 (413)
T ss_pred CeEecCCCCCCCC---CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence 5789988865432 57889999988887521 11112234556677777766544 33 699999999999998
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
+..+.. +|+ .|++.+|+|..........+..... .++.++...+ |+++|++.+.. ++++|
T Consensus 132 ~~~l~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~~~~~---~~~~l~~~~~~---~~k~i 191 (413)
T PLN00175 132 ILGLIN---------PGD-EVILFAPFYDSYEATLSMAGAKIKT----VTLRPPDFAV---PEDELKAAFTS---KTRAI 191 (413)
T ss_pred HHHhCC---------CCC-EEEEeCCCchhHHHHHHHcCCEEEE----EECCcccCCC---CHHHHHHhcCc---CceEE
Confidence 886654 565 7888889986554333222221111 1111111112 78999988865 67888
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCCCC---cceeecccccc-CCCccee
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVR---PDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~~~---pdi~s~sK~l~-gG~~~ig 303 (470)
+++.++||+|.++ +.+.+++|.++|++||++||+||+|..+.+.+..... +..+.. .-+.+|||.++ +|+ |+|
T Consensus 192 ~i~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~-RiG 269 (413)
T PLN00175 192 LINTPHNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGW-KIG 269 (413)
T ss_pred EecCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcch-hee
Confidence 8776799999999 8999999999999999999999999987554432111 111211 22349999998 899 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
|+++++++++.+.......+++.+.+.+.++.++|+..+. +.+++.++++++.+.+.|++. .+....+.|.+
T Consensus 270 ~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~p~g~~ 343 (413)
T PLN00175 270 WAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV------GFKVYPSSGTY 343 (413)
T ss_pred eeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC------CCeecCCCeeE
Confidence 9999999998886554445677888888888877753211 345666777777777777663 23344566666
Q ss_pred EEE-EeccCCCchhHHHHHHHHHH-cCceeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 382 NAV-EFDKTALPVSAYDICLKMKE-RGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 382 ~~~-~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~---------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.| .+.... ..+..++++.|.+ +||.+.|+. .+++||++ ..+++++++++++|.++++
T Consensus 344 f~~~~~~~~~-~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~--~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 344 FVMVDHTPFG-FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAF--CKDEETLRAAVERMKTKLK 412 (413)
T ss_pred EEEEeccccC-CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHh
Confidence 555 322111 0146789998875 599988752 46899995 4689999999999999876
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=219.07 Aligned_cols=344 Identities=18% Similarity=0.240 Sum_probs=255.7
Q ss_pred CCCCceEEEeecCCEEEeCCC--CeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCCC-----CCCCcHHHHHHH
Q 012138 54 YHPVPIVFSQAKGSSIWDPEG--NKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSRA-----FYNDKFPVFAER 125 (470)
Q Consensus 54 ~~~~p~~~~~~~g~~~~d~~G--~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~ 125 (470)
|... -+++..+|..+. ++| +++|+|+.+ |.+.+ +||+|.++-.++++.++.+... .+.+.+..|+.+
T Consensus 46 wk~e-rVi~s~q~p~i~-v~G~~k~ilnFcaNnYLGLs---shPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~k 120 (417)
T KOG1359|consen 46 WKRE-RVITSRQGPTIQ-VKGSDKKILNFCANNYLGLS---SHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESK 120 (417)
T ss_pred ceee-eEEeecccceEE-Eeccccceeeeccccccccc---CChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHH
Confidence 4433 556777887775 555 589999876 54444 8999999999999998765432 267889999999
Q ss_pred HhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 126 LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 126 l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
++++.+.++.++.+++..||..++.+++. | .+.|++..-+ |.+....+.+...
T Consensus 121 iAqfh~rED~ilypscfdANag~feail~---------p-edAvfSDeLN-hASIIdGirLckr---------------- 173 (417)
T KOG1359|consen 121 IAQFHGREDTILYPSCFDANAGAFEAILT---------P-EDAVFSDELN-HASIIDGIRLCKR---------------- 173 (417)
T ss_pred HHHHhCCCceEEeccccccchHHHHHhcC---------h-hhhhhccccc-cchhhhhhHHHhh----------------
Confidence 99999999999999999999999988765 3 3366666666 8887777665431
Q ss_pred ecCCCHHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccC
Q 012138 206 VDFGDITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWE 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~ 282 (470)
..|-|+.++|..+.+. .-+.++|+.+.+.++.|.+.| +++|.++++|||+++++||+|+ | ||.+|++. -+.+
T Consensus 174 y~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt-~E~~ 248 (417)
T KOG1359|consen 174 YRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGRGT-AEEF 248 (417)
T ss_pred hccchhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCCCh-HHHh
Confidence 1222777787766542 237789999999999999999 9999999999999999999999 5 67888775 3556
Q ss_pred CC--Cccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHH-HhhhhHHHHHHHHHH
Q 012138 283 EV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDV-IRDEKLAERSAHLGE 355 (470)
Q Consensus 283 ~~--~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~-~~~~~~~~~~~~~~~ 355 (470)
|+ ++|++ +++|++||. .-|++.+++.+++.++......-|+ .+|.-...+.++++. |....+....+.+.+
T Consensus 249 ~vm~~vdiinsTLgKAlGga--~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~q 326 (417)
T KOG1359|consen 249 GVMGDVDIINSTLGKALGGA--SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQ 326 (417)
T ss_pred CCCCcceehhhhhhhhhcCC--CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 65 35665 899999842 3445899999999887665555554 344444455556665 445667778888888
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec-------cCCCCEEEEecCCCCCHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-------PTHDTIVRLTPPLSISSN 428 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-------~~~~~~iR~~~~~~~t~e 428 (470)
++++.++.- .+......-.+..+.+.+. ..+..++++|+++|+++. |.+...+|+.++..||+|
T Consensus 327 rfr~~me~a------GftIsg~~hPI~pv~lGda---~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~e 397 (417)
T KOG1359|consen 327 RFREFMEAA------GFTISGASHPICPVMLGDA---RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEE 397 (417)
T ss_pred HHHHHHHhc------CceecCCCCCccceecccH---HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHH
Confidence 888887663 2332222234455545444 378889999999999874 445778999999999999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 012138 429 ELQEGSKALHDVLELDLP 446 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~~ 446 (470)
||+++++++.++.+ -+.
T Consensus 398 did~~i~Af~~vgr-~~~ 414 (417)
T KOG1359|consen 398 DIDRLIEAFSEVGR-FLN 414 (417)
T ss_pred HHHHHHHHHHHHHH-hhc
Confidence 99999999999987 443
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=243.10 Aligned_cols=340 Identities=14% Similarity=0.150 Sum_probs=223.7
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA~~ 146 (470)
+..+||..+... ++ ..+|.+.+++.+.+.... +.......++++.+++++++.+|. ++|++|+|+++++.
T Consensus 39 ~~~i~l~~g~~~-~~-~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDVD-AH-EPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCCC-CC-CCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 455677766433 22 356788888888876532 211223445678888888877652 67999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..|+|.+........... ....+.....+ +...+ |+++|++++++ ++
T Consensus 117 ~~~~~l~~---------~Gd-~Vlv~~P~y~~~~~~~~~~g~~-v~~v~~~~~~~~~~~~~---d~~~l~~~~~~---~~ 179 (405)
T PRK06207 117 LAVAATVA---------RGD-KVAIVQPDYFANRKLVEFFEGE-MVPVQLDYLSADKRAGL---DLDQLEEAFKA---GV 179 (405)
T ss_pred HHHHHhcC---------CCC-EEEEeCCCchhHHHHHHHcCCE-EEEEeccccCcccCCCc---CHHHHHHhhhh---cC
Confidence 99987754 455 7888999997654333322221 11000000000 01122 78999998876 56
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCc----ceeecccccc-CC
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRP----DMVILGKALG-GG 298 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~p----di~s~sK~l~-gG 298 (470)
++|+ ++| +||||.++ +.+.+++|.++|++||++||+||+|..|.+.|..+ ....+...+ -+.||||.++ +|
T Consensus 180 k~v~l~~P-~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG 257 (405)
T PRK06207 180 RVFLFSNP-NNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG 257 (405)
T ss_pred eEEEECCC-CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc
Confidence 7665 556 99999999 89999999999999999999999999876555321 111111112 2348999999 99
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+||+++++++++.+.........+.+.+.+.++.++|+.-. -++..+..+++++.+.+.|++ ++ .+....
T Consensus 258 l-RiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~----~~-~~~~~~ 331 (405)
T PRK06207 258 Y-RLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG----VE-GVFVRA 331 (405)
T ss_pred c-ceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc----CC-CceecC
Confidence 8 999999999999888654433444556677777766664210 022233334444444444433 22 244444
Q ss_pred cc-ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 377 GR-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 377 ~~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+. |.|+++.+.... .+..++++.|+ ++||.+.|+. .+++|++.. .+++++++++++|.++++ +++
T Consensus 332 p~gg~fl~~~l~~~~--~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~--~~~~~l~~al~rl~~~l~-~~~ 404 (405)
T PRK06207 332 PQAGSYLFPRLPRLA--VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS--QDHAAAVAAAERIAQLIE-RYR 404 (405)
T ss_pred CCeeEEEEEeCcccC--CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-Hhh
Confidence 54 556666554211 25678999997 5699998863 579999954 589999999999999998 653
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=240.51 Aligned_cols=335 Identities=16% Similarity=0.204 Sum_probs=226.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~ 150 (470)
+..+|++..+... + +.+|.+.+++.+.+...... .+. ..-..++.+.++++++. +++++++|+++|+..+++
T Consensus 27 ~~~~i~l~~~~~~--~-~~~~~~~~a~~~~~~~~~~~--~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~ 101 (380)
T PRK06225 27 DKEMIWMGQNTNH--L-GPHEEVREAMIRCIEEGEYC--KYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMR 101 (380)
T ss_pred cCCeEEccCCCCC--C-CCCHHHHHHHHHHHhcCCCC--CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHH
Confidence 4567888766432 3 37899999999988653221 121 22357788888888764 579999999999999998
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
.+.. +|+ .|++.+++|+....... ..+..... .+.. .+...+ |++++++.+.+ ++++|
T Consensus 102 ~~~~---------~gd-~vl~~~p~y~~~~~~~~-~~g~~~~~---v~~~~~~~~~~~---d~~~l~~~~~~---~~~~v 161 (380)
T PRK06225 102 AFLS---------PGD-NAVTPDPGYLIIDNFAS-RFGAEVIE---VPIYSEECNYKL---TPELVKENMDE---NTRLI 161 (380)
T ss_pred HhcC---------CCC-EEEEcCCCCcchHHHHH-HhCceEEe---eccccccCCccC---CHHHHHhhcCC---CceEE
Confidence 7653 454 68888888864432221 11111110 0100 001122 78899988865 67777
Q ss_pred E-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc-CCCCcceeecccccc-CCCcceeEE
Q 012138 229 L-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW-EEVRPDMVILGKALG-GGVIPVSAV 305 (470)
Q Consensus 229 i-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~-~~~~pdi~s~sK~l~-gG~~~ig~v 305 (470)
+ ++| +||+|.++ +.+++++|.++|++||+++|+||+|.+|.. +....... .....++.+|||.++ +|+ |+|++
T Consensus 162 ~l~~p-~NptG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RiG~i 237 (380)
T PRK06225 162 YLIDP-LNPLGSSY-TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSFSKIFGMAGL-RIGAV 237 (380)
T ss_pred EEeCC-CCCCCcCC-CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeechhhcCCccc-eeEEE
Confidence 6 555 99999999 899999999999999999999999987642 21111111 112234669999998 898 99999
Q ss_pred EecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEEeccceeE
Q 012138 306 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRGRGLFN 382 (470)
Q Consensus 306 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~~~~g~~~ 382 (470)
++++++++.+.... ..+++.+.++++++.++++...+ +.+.+..+++.+.+.+.|+++ ++. +...++.|.++
T Consensus 238 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~g~~~ 312 (380)
T PRK06225 238 VATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEI----EGVFLPVYPSHGNMM 312 (380)
T ss_pred ecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC----cCCccccCCCCCeEE
Confidence 99999998876532 34567788888888777754211 223333344444555555543 111 22234567788
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++.+.... .+..++++.|.++||.+.|+ +.+++|++ +..++|++++++++|+++++ +++.
T Consensus 313 ~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s--~~~~~e~l~~~~~~l~~~~~-~~~~ 379 (380)
T PRK06225 313 VIDISEAG--IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVS--FSIPREQVEVFCEEFPDVVE-TLRT 379 (380)
T ss_pred EEEccccc--CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEE--eCCCHHHHHHHHHHHHHHHH-Hhhc
Confidence 77764322 36788999999999999875 24689999 45689999999999999998 7764
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=240.23 Aligned_cols=332 Identities=15% Similarity=0.144 Sum_probs=225.0
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al 149 (470)
.+++|..|.+..+ .++.+.+++.+.+..... .......++++.+++++.+.++ .+++++|+|+++|+..++
T Consensus 25 ~~i~l~~g~~~~~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGESDLP---TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 4678888754422 578999999888765321 1122344567778888776655 468999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC--CeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP--GHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+.+.. +|+ .|++..++|..........+.. .. ..+... +...+ |+++|++.++. ++++
T Consensus 102 ~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~---~v~~~~~~~~~~~---d~~~l~~~~~~---~~~~ 161 (382)
T PRK06108 102 QALVG---------PGD-EVVAVTPLWPNLVAAPKILGAR-VV---CVPLDFGGGGWTL---DLDRLLAAITP---RTRA 161 (382)
T ss_pred HHhcC---------CCC-EEEEeCCCccchHHHHHHCCCE-EE---EeeCCCCCCCccC---CHHHHHHhcCc---cceE
Confidence 87754 455 6888888886543322222211 11 011110 01112 78999888864 6777
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc-CCc-cc-cccCCCCcc---eeecccccc-CCCc
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS-GRM-LA-SDWEEVRPD---MVILGKALG-GGVI 300 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~-G~~-~~-~~~~~~~pd---i~s~sK~l~-gG~~ 300 (470)
++++.++||+|.++ +.+.+++|.++|++||++||+||+|.++.+. +.. .. .+.....+. +.+|||.++ +|+
T Consensus 162 i~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~- 239 (382)
T PRK06108 162 LFINSPNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGW- 239 (382)
T ss_pred EEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccc-
Confidence 77655699999999 8999999999999999999999999987543 211 11 111111112 348999997 798
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
|+||+++++++++.+.......+++.+++.+.++.++|+...+ ++++++++++.+.+.+.|+++ + .+....+.
T Consensus 240 RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~p~ 314 (382)
T PRK06108 240 RLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL----P-GVEVAKPD 314 (382)
T ss_pred ceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC----C-CCcccCCC
Confidence 9999999999988876543334556788888888877764221 345566666666676666553 1 24444556
Q ss_pred ceeE-EEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLFN-AVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.++ ++.++... +..++++.|. ++||.+.|+. .+++||++.. +++++++++++|.++++
T Consensus 315 ~g~~~~~~l~~~~---~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 315 GAMYAFFRIPGVT---DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred eeEEEEEeCCCCC---CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 5555 44444322 5678998886 5699998752 5799999665 89999999999999875
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=238.77 Aligned_cols=323 Identities=15% Similarity=0.115 Sum_probs=217.4
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHc----cccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL----TLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
..+|+..+... ...+|.+.+++.+.+... ..++.....++++.+++++.+.++ .++|++|+|+++++..
T Consensus 27 ~~i~l~~~~~~---~~~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~ 103 (368)
T PRK03317 27 VPVRLNTNENP---YPPSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQ 103 (368)
T ss_pred ceeEecCCCCC---CCCCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHH
Confidence 36888877433 237899999999887532 111111122345555666555433 4679999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++++.. +|+ .|++..|+|++........... .... +. .+...+ |+++++++++++ ++++
T Consensus 104 ~~~~~~~---------~gd-~v~v~~P~y~~~~~~~~~~g~~-~~~~---~~-~~~~~~---d~~~l~~~~~~~--~~~~ 163 (368)
T PRK03317 104 LLQAFGG---------PGR-TALGFVPSYSMHPIIARGTHTE-WVEG---PR-AADFTL---DVDAAVAAIAEH--RPDV 163 (368)
T ss_pred HHHHhcC---------CCC-EEEEeCCChHHHHHHHHhcCCe-eEEc---cc-CCCCCC---CHHHHHHHHhcc--CCCE
Confidence 9997765 455 7888999997654433221111 1100 00 001122 789999998753 4566
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee---ecccccc-CCCccee
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVS 303 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~---s~sK~l~-gG~~~ig 303 (470)
|+++.++||+|.+++ .+++.++|+.++++||+||+|++|++.|........+..|+++ ||||+++ +|+ |+|
T Consensus 164 i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~Gl-RiG 238 (368)
T PRK03317 164 VFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGG-RLG 238 (368)
T ss_pred EEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchh-hhh
Confidence 664445999999995 5566666666689999999999987666443333333345665 9999998 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
|+++++++++.+.... .+|+.++++++++.++|+..+. .+..+++++..+.+.+.|++. .+....+.|.++
T Consensus 239 ~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~~~~ 310 (368)
T PRK03317 239 YLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL------GLRVAPSDANFV 310 (368)
T ss_pred hhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC------CCEeCCCCCcEE
Confidence 9999999999887433 4678889999998888865322 122333444555555555442 234445677777
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. ... +..++++.|+++||.+.+.+ ++++||++ .+.+++++++++|+++++
T Consensus 311 ~~~-~~~----~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~---~~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 311 LFG-RFA----DRHAVWQGLLDRGVLIRDVGIPGWLRVTI---GTPEENDAFLAALAEVLA 363 (368)
T ss_pred EEe-ccC----CHHHHHHHHHHCCEEEEeCCCCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence 662 221 46789999999999998754 58999993 478899999999999886
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=235.75 Aligned_cols=322 Identities=17% Similarity=0.183 Sum_probs=223.5
Q ss_pred CeEEeccCCcccccCCC-CCHHHHHHHHHHHHHcc-------ccCCC-C----CCCcHHHHHHHHhhhhCCCeEEecCCh
Q 012138 75 NKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLT-------LSSRA-F----YNDKFPVFAERLTSMFGYDMVLPMNTG 141 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-------~~~~~-~----~~~~~~~l~~~l~~~~~~~~v~~~~sG 141 (470)
.+++||.++ ..||+ .+|.+.+++.++++.+. ....+ - ..+.+.++++.++++++.+.++++++|
T Consensus 4 ~~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG 80 (370)
T PRK05937 4 SLSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSG 80 (370)
T ss_pred CceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECCh
Confidence 357788776 33444 68999999999887762 21111 1 346789999999999998888889999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~ 221 (470)
+.|+...+..+. ++..+|+.+..+|+++..++..... . ...++++|+++|+++++..
T Consensus 81 ~~a~~~~~~~~~-----------~~~d~ii~d~~~H~sv~~~~~~~~~--~----------~~~~~~~d~~~l~~~l~~~ 137 (370)
T PRK05937 81 YMANLGLCAHLS-----------SVTDYVLWDEQVHISVVYSLSVISG--W----------HQSFRHNDLDHLESLLESC 137 (370)
T ss_pred HHHHHHHHHHhC-----------CCCCEEEEEhhhhHHHHHHHHHcCC--c----------eEEecCCCHHHHHHHHHhh
Confidence 988865443321 1225666777889998887655321 1 2456788999999999753
Q ss_pred C---CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCcccc--ccCCCCcceeecccc
Q 012138 222 G---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLAS--DWEEVRPDMVILGKA 294 (470)
Q Consensus 222 ~---~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~--~~~~~~pdi~s~sK~ 294 (470)
. +++.+|++++++|++|.+.| +++|.++|+++|+++++||+|+ | ++.+|..+.. ...+..+|+.||||.
T Consensus 138 ~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~ 213 (370)
T PRK05937 138 RQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKA 213 (370)
T ss_pred hccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhh
Confidence 1 24567778999999999998 9999999999999999999999 5 6667654321 111223577899999
Q ss_pred ccC-CCcceeEEEecHHHHhhcCc--CCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 295 LGG-GVIPVSAVLADKEVMLCIQP--GEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 295 l~g-G~~~ig~v~~~~~~~~~~~~--~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
+++ |. .+++.+++.+.+.. .....+.+.++++++++.++++.+.+ +..+++++++.+++.+.|...
T Consensus 214 ~g~~G~----~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~----- 284 (370)
T PRK05937 214 LGSMGA----ALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA----- 284 (370)
T ss_pred hhcCce----EEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC-----
Confidence 974 32 35565665554331 11223334678888888888988765 334556666666666554321
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+.+....+.++. .....+.+.|.++||.+... ..+.+|++++..+|+|||+++++.|.++++ ++.
T Consensus 285 -------~~~~~~~i~~~~----~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~-~~~ 352 (370)
T PRK05937 285 -------APGCVQPIFLPG----ISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLE-KYQ 352 (370)
T ss_pred -------CCCCEEEEEeCC----hhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHH-HhC
Confidence 011122233432 24578889999999988632 256899999999999999999999999998 764
Q ss_pred C
Q 012138 447 K 447 (470)
Q Consensus 447 ~ 447 (470)
+
T Consensus 353 ~ 353 (370)
T PRK05937 353 K 353 (370)
T ss_pred C
Confidence 4
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=239.45 Aligned_cols=330 Identities=13% Similarity=0.125 Sum_probs=222.4
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----C-CeEEecCChhHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----Y-DMVLPMNTGAEGVE 146 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~-~~v~~~~sGteA~~ 146 (470)
|..++||..+... ++ .++.+.+++.+.+.....+. .....++++.+++++.+..| . ++|++|+|+++|+.
T Consensus 31 ~~~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~ 107 (399)
T PRK07681 31 GHKMIDLSIGNPD--MP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV 107 (399)
T ss_pred CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH
Confidence 5567899888543 22 57888888888775432111 12234456677777765533 3 67999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.++.++.. +|+ .|++..|+|.+........+..... .+...+ .+.+ |++++++.+.+ ++
T Consensus 108 ~~~~~~~~---------~Gd-~Vlv~~P~y~~~~~~~~~~G~~~~~----v~~~~~~~~~~---d~~~l~~~~~~---~~ 167 (399)
T PRK07681 108 HLPMVYAN---------PGD-IILVPDPGYTAYETGIQMAGATSYY----MPLKKENDFLP---DLELIPEEIAD---KA 167 (399)
T ss_pred HHHHHhCC---------CCC-EEEECCCCccchHHHHHhcCCEEEE----EecCCCCCCcC---CHHHHHHhccc---cc
Confidence 98887654 455 7888999997665544333322111 111111 1112 78888887754 67
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc-ccC---CCCcceeecccccc-CCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS-DWE---EVRPDMVILGKALG-GGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~-~~~---~~~pdi~s~sK~l~-gG~ 299 (470)
++|+++.++||||.++ +++.+++|.++|++||++||+||+|.+|...+... .. +.. +....+.||||.++ +|+
T Consensus 168 k~v~l~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 246 (399)
T PRK07681 168 KMMILNFPGNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGS 246 (399)
T ss_pred eEEEEeCCCCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccc
Confidence 8888663499999999 99999999999999999999999999875444221 11 111 11223459999998 998
Q ss_pred cceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
|+||+++++++++.+........++.+.+.+.++.+.|+.-.+ +..++.++++.+.+.+.|++. .+....+
T Consensus 247 -RiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~p 319 (399)
T PRK07681 247 -RIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF------GWNVDKP 319 (399)
T ss_pred -eeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC------CCcccCC
Confidence 9999999999998886544445667778888888777753211 233445555566666666553 1332234
Q ss_pred c-ceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 378 R-GLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 378 ~-g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
. |.++++.+... .++.++++.|.+ +||.+.|+. .+++|++. ..+++++++++++|++
T Consensus 320 ~~g~f~~~~l~~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~--~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 320 AGSMFVWAEIPKG---WTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIAL--VQDEEVLQQAVENIRN 384 (399)
T ss_pred CeeeEEEEECCCC---CCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEe--cCCHHHHHHHHHHHHH
Confidence 4 55555555432 257789999887 799998762 46999995 4688999999999988
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=239.11 Aligned_cols=338 Identities=16% Similarity=0.205 Sum_probs=224.3
Q ss_pred EEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh---CCCeEEecCChhHHH
Q 012138 69 IWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGV 145 (470)
Q Consensus 69 ~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~ 145 (470)
-++..|..++++..+ .++...++.+ +++.+++......+.. ..-..+|.+.+++++ ..++|++|+|+++|+
T Consensus 20 ~~~~~~~~~~~~~~~---e~~~~~~~~~-~~~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al 93 (373)
T PRK07324 20 TYDIAESCIDSLTLE---ELLALAGKNP-EAFYQELGQKKLTYGW--IEGSPEFKEAVASLYQNVKPENILQTNGATGAN 93 (373)
T ss_pred ccccccCCCCCCcHH---HHHhccCcch-HHHHHHHhcCCccCCC--CCCCHHHHHHHHHHhcCCChhhEEEcCChHHHH
Confidence 356666667777665 3333356667 8887777654332211 112356666666654 357899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..++..+.. +|+ .|++..|+|..........+.... +.+...+ ... .|++++++++.+ +
T Consensus 94 ~~~~~~l~~---------~gd-~Vl~~~P~y~~~~~~~~~~g~~v~----~v~~~~~~~~~---~d~~~l~~~~~~---~ 153 (373)
T PRK07324 94 FLVLYALVE---------PGD-HVISVYPTYQQLYDIPESLGAEVD----YWQLKEENGWL---PDLDELRRLVRP---N 153 (373)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCCEEE----EEecccccCCC---CCHHHHHHhCCC---C
Confidence 999987754 465 677788888654332222221111 0111110 011 178889887765 7
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCCCCcceeecccccc-CCCcce
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILGKALG-GGVIPV 302 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~~~pdi~s~sK~l~-gG~~~i 302 (470)
+++|+++.++||||.++ +++.+++|.++|++||++||+||+|.++...+..... +..+....+.+|||.++ +|+ |+
T Consensus 154 ~kli~i~~p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~-Ri 231 (373)
T PRK07324 154 TKLICINNANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGI-RV 231 (373)
T ss_pred CcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccc-ee
Confidence 78888767799999999 8999999999999999999999999987655432211 11111123459999998 898 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
||+++++++++.+.......+++.+.+++.++..+|+..+. +..++.++++.+.+.+.|. ..| .+..+.+.|.
T Consensus 232 G~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~----~~~-~~~~~~p~gg 306 (373)
T PRK07324 232 GWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVA----KEP-RVSYVKPKAV 306 (373)
T ss_pred EEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh----cCC-CceEECCCce
Confidence 99999999998887665556677788888888777753211 2223333334444444333 232 4555666665
Q ss_pred e-EEEEeccCCCchhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 381 F-NAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 381 ~-~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ .++.++.. .+..+++++|+ +.||.+.|+. ++++||+ +..+++.+++++++|.++++ +.
T Consensus 307 ~~~~i~~~~~---~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis--~~~~~~~l~~~l~rl~~~l~-~~ 371 (373)
T PRK07324 307 STSFVKLDVD---MPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIG--YCCDTETLKKGLKKLSEFLR-EF 371 (373)
T ss_pred EEEEEEeCCC---CCHHHHHHHHHHhcCEEEECccccCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH-hc
Confidence 4 44444433 26778999876 5699999874 5899999 55689999999999999997 53
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=230.28 Aligned_cols=325 Identities=22% Similarity=0.264 Sum_probs=227.7
Q ss_pred CeEEeccCCcccccCCCC-CHHHHHHHHHHHHHccccCCC-----CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHC-HPKIMKALQEQAEKLTLSSRA-----FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETA 148 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~a 148 (470)
++||+|+++ ..||++ ||+|.+++.+.++++...... ...+...++++.++++++.+.++++++|++++..+
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~ 77 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGV 77 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHH
Confidence 468888887 668886 999999999999876432111 24677889999999999988888889999999988
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC--CCeE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG--DQIA 226 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~--~~~~ 226 (470)
++.+.. +|+ .|++.++. |..........+. ....++..|++++++++++.. .+++
T Consensus 78 ~~~~~~---------~gd-~Vl~~~~~-~~~~~~~~~~~g~------------~~~~~~~~~~~~le~~i~~~~~~~~~~ 134 (349)
T cd06454 78 LSTLAG---------KGD-LIISDSLN-HASIIDGIRLSGA------------KKRIFKHNDMEDLEKLLREARRPYGKK 134 (349)
T ss_pred HHHhcC---------CCC-EEEEehhh-hHHHHHHHHHcCC------------ceEEecCCCHHHHHHHHHHhhccCCCe
Confidence 876643 455 67776665 4433322222221 123344558899999997632 3678
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccc-cccCCCCccee--eccccccCCCcc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLA-SDWEEVRPDMV--ILGKALGGGVIP 301 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~-~~~~~~~pdi~--s~sK~l~gG~~~ 301 (470)
+|++++++|++|...| +++|.++|++||+++|+||+|+ | ++..+.... ........|++ +++|.+++ +
T Consensus 135 ~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~ 207 (349)
T cd06454 135 LIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---V 207 (349)
T ss_pred EEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc---c
Confidence 8888888999999987 9999999999999999999997 3 222222110 11111123544 78998874 3
Q ss_pred eeEEEecHHHHhhcCcCCc--cCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 302 VSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
.|++++++++++.+..... ..+.+.++..++++.++++.+.+ +...++++++.+++.+.|.+++. ....+.
T Consensus 208 gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~------~~~~~~ 281 (349)
T cd06454 208 GGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELGF------PVGGSP 281 (349)
T ss_pred CCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC------cccCCC
Confidence 4678888888877654322 12235678888888899988765 56778888889999888877521 122222
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+.++.+....+. .+..++.+.|.++||.+.++ ..+++|++++...+++++++++++|+++
T Consensus 282 ~~~~~~~~~~~~--~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 282 SHIIPPLIGDDP--AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCcEEEEeCCCh--HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 333333222211 36788999999999998652 2478999999889999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=237.67 Aligned_cols=335 Identities=13% Similarity=0.131 Sum_probs=214.8
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA 144 (470)
+|+.++||..|... ++ .++.+.+++.+.+.... +.......++++.+++++.+..| .+ +|++|+|+++|
T Consensus 28 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLGSSD--LP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 35667888877543 22 57889999988775321 11112234556667777765443 45 69999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+..+++++.. +|+ .|++..|+|.+....+...+... .. .+..++ .+.. |++++++.+..
T Consensus 105 l~~~~~~l~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~~-~~---v~~~~~~~~~~---d~~~l~~~~~~--- 164 (388)
T PRK07366 105 TAHLPLAVLN---------PGD-FALLLDPGYPSHAGGVYLAGGQI-YP---MPLRAENDFLP---VFADIPTEVLA--- 164 (388)
T ss_pred HHHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHhcCCEE-EE---EECCCccCCCC---CHHHHHHhhcc---
Confidence 9999887654 455 78889999977654443333221 11 111111 1111 67777776654
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc--cccccCC----CCcceeecccccc-
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM--LASDWEE----VRPDMVILGKALG- 296 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~--~~~~~~~----~~pdi~s~sK~l~- 296 (470)
++++|++.+++||||.++ +.+.+++|.++|++||++||+||+|..|.+.+.. ....... ...-+.||||.++
T Consensus 165 ~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~ 243 (388)
T PRK07366 165 QARLMVLSYPHNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNM 243 (388)
T ss_pred cceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence 577777666699999999 9999999999999999999999999987554431 1111111 1112349999997
Q ss_pred CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 297 GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 297 gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+|+ |+||+++++++++.+........++.....+.++.+++..-++ +.+++.++++++.+.+.|++++ +..
T Consensus 244 ~Gl-RiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~~------~~~ 316 (388)
T PRK07366 244 GGF-RIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQIG------WPV 316 (388)
T ss_pred cch-hheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC------Ccc
Confidence 998 9999999999998876543333333333333444444431111 3345556666666666665531 222
Q ss_pred Eec-cceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 375 VRG-RGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 375 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+ .|.|+++.++... ..+..++++.|. ++||.+.|+. .+++||+. ..+++++++++++|.+++
T Consensus 317 ~~p~~g~f~~~~~~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 317 PLPEATMYVWAKLPEPW-QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFAL--VHDPDILEEAVERIAAFL 388 (388)
T ss_pred cCCCeeEEEEEECCccc-CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHhC
Confidence 333 4555555554311 113567887774 5699998862 47999994 467999999999998764
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=235.56 Aligned_cols=330 Identities=15% Similarity=0.153 Sum_probs=220.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc--ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT--LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA~~~a 148 (470)
.+|||..|... ++ .++.+.+++.+.++... +.+.....++++++++++++++|. +++++|+|+++|+..+
T Consensus 30 ~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~ 106 (384)
T PRK12414 30 DALNLSQGAPN--FA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAA 106 (384)
T ss_pred CeEEcCCCCCC--CC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHH
Confidence 46788877543 22 57889999888776421 112223456678888888887764 4699999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++.+.. +|+ .|++..++|.............. .. .+...+...+ |++.|+++++. ++++|
T Consensus 107 ~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~-~~---v~~~~~~~~~---d~~~l~~~l~~---~~~~v 166 (384)
T PRK12414 107 ISALVH---------PGD-EVIYFEPSFDSYAPIVRLQGATP-VA---IKLSPEDFRV---NWDEVAAAITP---RTRMI 166 (384)
T ss_pred HHHhcC---------CCC-EEEEeCCCccchHHHHHHcCCEE-EE---EecCcccccc---CHHHHHhhcCc---ccEEE
Confidence 987754 465 78888999865433322222111 00 1111111122 78999988864 67878
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc-ccCCCC---cceeecccccc-CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS-DWEEVR---PDMVILGKALG-GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~-~~~~~~---pdi~s~sK~l~-gG~~~i 302 (470)
++..++||||.++ +++.+++|.++|++||+++|+||+|..|.+.+... .. ...+.. .-+.||||.++ +|+ |+
T Consensus 167 ~i~~p~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl-Ri 244 (384)
T PRK12414 167 IVNTPHNPSATVF-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGW-RV 244 (384)
T ss_pred EEcCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccc-eE
Confidence 8655699999999 89999999999999999999999999765544221 11 111211 12348999997 998 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
||+++++++++.+.......+++.+.+++.++...|+.-. ...+.+.++++++.+.+.|++. .+...++.|.|
T Consensus 245 G~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------g~~~~~~~gg~ 318 (384)
T PRK12414 245 GYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS------RFELLPSEGSF 318 (384)
T ss_pred EEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC------CCeecCCCcce
Confidence 9999999998887654444567778888888776664211 1234556666777777776663 23344566766
Q ss_pred EEE-EeccCCCchhHHHHH-HHHHHcCceeccCC--------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 382 NAV-EFDKTALPVSAYDIC-LKMKERGILAKPTH--------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 382 ~~~-~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~--------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+.| .+.... .....+++ +.|.++||.+.|+. .+++|++. ..+++++++++++|.+
T Consensus 319 ~~~~~~~~~~-~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 319 FMLARFRHFS-DESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSF--SKDDATLVEGARRLCS 383 (384)
T ss_pred EEEEcccccC-CCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence 666 443210 01344555 55667799998852 46899995 4579999999999865
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-27 Score=235.59 Aligned_cols=337 Identities=20% Similarity=0.224 Sum_probs=238.7
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc------CCCCCCCcHHHHHHHHhhhhC----CCeEEecCChh
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS------SRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGt 142 (470)
+....+||..+.....+. +...+.+++.+.++..... ......++++.+++++....| .++|++|+|.+
T Consensus 87 ~~~~~i~f~~g~p~~~~f-p~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q 165 (459)
T COG1167 87 DDPSVIDFAGGLPDPSLF-PLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQ 165 (459)
T ss_pred CCCceecCCCCCCCcccC-CHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHH
Confidence 346778888886433222 3445666666665433221 112234556667777663333 46899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----CHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----DITALEKIF 218 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~Le~~l 218 (470)
+|++.+++++.. ||+ .|++.+|+|++........... ...+|.+ |+++||+.+
T Consensus 166 ~al~l~~~~l~~---------pGd-~v~vE~PtY~~~~~~~~~~g~~-------------~~~vp~d~~G~~~e~le~~~ 222 (459)
T COG1167 166 QALDLLLRLLLD---------PGD-TVLVEDPTYPGALQALEALGAR-------------VIPVPVDEDGIDPEALEEAL 222 (459)
T ss_pred HHHHHHHHHhCC---------CCC-EEEEcCCCcHHHHHHHHHcCCc-------------EEecCCCCCCCCHHHHHHHH
Confidence 999999998865 565 9999999998765544333221 2233332 799999999
Q ss_pred HhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccccCCCCcceeeccc
Q 012138 219 KESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDWEEVRPDMVILGK 293 (470)
Q Consensus 219 ~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~~~~~pdi~s~sK 293 (470)
+++ +++++++.| .|||||.++ +.+..++|.++|++||++||.||.|+.|.+.+.. .+.+..+...-+.||||
T Consensus 223 ~~~--~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK 299 (459)
T COG1167 223 AQW--KPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSK 299 (459)
T ss_pred hhc--CCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehh
Confidence 886 789999999 899999999 9999999999999999999999999988666432 23333333445669999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH--Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV--IRD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+++|+ |+||+++++++++.+....+..+.+.+.+.+.+....+.. +.+ ..+++.++++.+.+.+.|.+. .|
T Consensus 300 ~l~Pgl-RlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~---~~ 375 (459)
T COG1167 300 TLAPGL-RLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEY---LP 375 (459)
T ss_pred hccccc-ceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CC
Confidence 999999 9999999999999998777777888888887777655541 111 234444444444444444443 22
Q ss_pred CceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceecc-CC--------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKP-TH--------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 370 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~~--------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+.+....+. |.|+++.++... +..++.+.+.++||.+.| +. .+.+||+++. .+++++++++.+|.+
T Consensus 376 ~~~~~~~p~gG~flwl~l~~~~---~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i~~gi~~l~~ 451 (459)
T COG1167 376 ELATWTRPEGGLFLWLELPEGI---DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS-PSEEEIEEGIKRLAA 451 (459)
T ss_pred CCeeeecCCceEEEEEEcCCCC---CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHHH
Confidence 234444444 666777666543 788999999999999887 31 4589999764 568999999999999
Q ss_pred HHhccc
Q 012138 440 VLELDL 445 (470)
Q Consensus 440 ~l~~~~ 445 (470)
++. +.
T Consensus 452 ~~~-~~ 456 (459)
T COG1167 452 LLR-EA 456 (459)
T ss_pred HHH-HH
Confidence 998 54
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=233.48 Aligned_cols=331 Identities=14% Similarity=0.192 Sum_probs=219.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHc-cccC-CCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-TLSS-RAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~~~al 149 (470)
.++||..+.+. +. .++++.+++.+.+... ..++ ..+..++++.+++++.+.+ ..+++++|+|+++|+..++
T Consensus 30 ~~i~l~~g~p~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~ 106 (384)
T PRK06348 30 DIIDLSLGDPD--LI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL 106 (384)
T ss_pred CcEEcCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence 36788877433 22 5677777665544321 1111 1122345666777765543 3578999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
.++.. +|+ .|++..|+|.+............ .. .+.. .+...+ |+++|++++++ ++++|
T Consensus 107 ~~~~~---------~gd-~vlv~~p~y~~~~~~~~~~g~~~-~~---~~~~~~~~~~~---d~~~l~~~~~~---~~~~v 166 (384)
T PRK06348 107 QSILD---------PGD-EVIIHEPYFTPYKDQIEMVGGKP-II---LETYEEDGFQI---NVKKLEALITS---KTKAI 166 (384)
T ss_pred HHhcC---------CCC-EEEEeCCCCcchHHHHHHcCCEE-EE---ecCCcCcCCcC---CHHHHHHhhCc---CccEE
Confidence 87754 455 78889999876554443332211 10 0110 011122 78999998865 66777
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc-cCCCCc---ceeecccccc-CCCccee
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRP---DMVILGKALG-GGVIPVS 303 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~-~~~~~p---di~s~sK~l~-gG~~~ig 303 (470)
++..++||||.++ +.+.+++|.++|++||++||+||+|.+|...+...... ..+..+ -+.||||.++ +|+ |+|
T Consensus 167 ~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl-RiG 244 (384)
T PRK06348 167 ILNSPNNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGW-RIG 244 (384)
T ss_pred EEeCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccc-cce
Confidence 7555599999999 99999999999999999999999999875443321111 111111 2349999999 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
|+++++++++.+........++.+++++.++..+++..++ +.+++.++++.+++.+.|+.+ + .+....+.|.|
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~----~-~~~~~~p~gg~ 319 (384)
T PRK06348 245 YVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESI----P-NLSLHPPKGSI 319 (384)
T ss_pred eeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC----C-CceeccCCeeE
Confidence 9999999988876555556677888888888877763321 234555556666666666542 2 23444566665
Q ss_pred EE-EEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 382 NA-VEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 382 ~~-~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+. +.+.... .+..++++.|.+ .||.+.|+. .+++|++. ..+++++++++++|.++
T Consensus 320 ~~~~~~~~~~--~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 320 YAFINIKKTG--LSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC--TVGIEVLEEAFNRIEKM 382 (384)
T ss_pred EEEEecccCC--CCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe--cCCHHHHHHHHHHHHhh
Confidence 54 4443221 257789988875 599998763 57999995 46899999999998764
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=232.71 Aligned_cols=340 Identities=14% Similarity=0.148 Sum_probs=223.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-cc-CCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LS-SRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~-~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~ 147 (470)
..+|||..+... ++ .++.+.+++.+.+.... .+ +.....++++.+++++...++ .++|++|+|+++|+..
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGEPD--FT-TPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 457899888654 33 46788888888775421 11 111223445556666554444 2579999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++.+.. +|+ .|++..++|.+........... .. +.+...+...+ |+++|++++++..+++++
T Consensus 107 ~~~~~~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~---~~~~~~~~~~~---d~~~l~~~~~~~~~~~~~ 169 (391)
T PRK07309 107 SLTAILE---------PGD-KVLLPAPAYPGYEPIVNLVGAE-IV---EIDTTENDFVL---TPEMLEKAILEQGDKLKA 169 (391)
T ss_pred HHHHhcC---------CCC-EEEEeCCCCcchHHHHHHcCCE-EE---EEecCCcCCcC---CHHHHHHHhhccCCCeEE
Confidence 9887643 455 7888889987754332222211 11 11111111112 789999998764446888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC--CCCcceeecccccc-CCCccee
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE--EVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~--~~~pdi~s~sK~l~-gG~~~ig 303 (470)
|+++.++||+|.++ +.+.+++|.++|++||+++|+||+|..|...+.. ...... +...-+.+|||.++ +|+ |+|
T Consensus 170 i~l~~P~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-RvG 247 (391)
T PRK07309 170 VILNYPANPTGVTY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGW-RIG 247 (391)
T ss_pred EEEECCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccc-eeE
Confidence 88664499999999 8999999999999999999999999987554422 111111 11112349999998 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
|+++++++++.+.........+.+.+++.++...|+... ...++++++++++++.+.|++. .+....+.|.+
T Consensus 248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~p~gg~ 321 (391)
T PRK07309 248 LIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL------GFKIIKPDGAF 321 (391)
T ss_pred EEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC------CCeecCCCeeE
Confidence 999999999888643333334567777777777665321 1234556666666676666553 23444555665
Q ss_pred EEE-EeccCCCchhHHHHHHHH-HHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 382 NAV-EFDKTALPVSAYDICLKM-KERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 382 ~~~-~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+.| .++... ..+..++++++ .++||.+.|+. ++++|++.+ .+.+++++++++|.++++ +++
T Consensus 322 ~~~~~l~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~~~~-~~~ 390 (391)
T PRK07309 322 YIFAKIPAGY-NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKEYME-EHA 390 (391)
T ss_pred EEEEECCCCC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-hhc
Confidence 554 443211 12466788765 56799998763 579999954 578999999999999998 653
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=234.80 Aligned_cols=341 Identities=15% Similarity=0.133 Sum_probs=224.5
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC-----CC-eEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG-----YD-MVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~-----~~-~v~~~~sGteA 144 (470)
.|+.++|+..|... ++ .+|.+.+++.+.+..... ++......+++.+++++.+.+| .+ +|++|+|++++
T Consensus 42 ~~~~~i~L~~g~p~--~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a 118 (410)
T PRK06290 42 PDMELIDMGVGEPD--EM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA 118 (410)
T ss_pred CCCCeEEcCCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence 46667899888543 23 577888888876643211 1112334556677777765444 23 69999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+..++.++.. +|+ .|++..|+|.+....+...+.. ... .+...+ .... |++++++.+.+
T Consensus 119 l~~~~~~~~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~-v~~---v~~~~~~~~~~---d~~~l~~~~~~--- 178 (410)
T PRK06290 119 LAMLPSCFIN---------PGD-VTLMTVPGYPVTGTHTKYYGGE-VYN---LPLLEENNFLP---DLDSIPKDIKE--- 178 (410)
T ss_pred HHHHHHHhCC---------CCC-EEEEeCCCCccHHHHHHHcCCE-EEE---EecCCCcCCcC---CHHHHHHhhcc---
Confidence 9999887754 455 8888999997654433322221 110 111111 1111 78888888765
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-cc---CCCCcceeecccccc-CC
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DW---EEVRPDMVILGKALG-GG 298 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~---~~~~pdi~s~sK~l~-gG 298 (470)
++++|+++.++||||.++ +.+.+++|.++|++||++||+||+|..+...+....+ .. .+...-+.+|||.++ +|
T Consensus 179 ~~k~i~l~nP~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G 257 (410)
T PRK06290 179 KAKLLYLNYPNNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG 257 (410)
T ss_pred cceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCch
Confidence 678888664499999999 9999999999999999999999999976544422111 11 112123459999996 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
+ |+||+++++++++.+.........+.+.+++.++..+|+.-+ .+.++++++++.+.+.+.|+++ .+...++
T Consensus 258 l-RiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~p 330 (410)
T PRK06290 258 W-RLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV------GFKAEMP 330 (410)
T ss_pred h-heEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC------CCeecCC
Confidence 8 999999999999888654433444455667777766665311 1335556666666676766653 1334456
Q ss_pred cceeEEE-EeccCCC----chhHHHHHHHHHHcC-ceeccCC--CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 378 RGLFNAV-EFDKTAL----PVSAYDICLKMKERG-ILAKPTH--DTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 378 ~g~~~~~-~~~~~~~----~~~~~~~~~~l~~~G-v~~~~~~--~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.|.|+.| .++.... ..+..++++.|.++| +.+.|+. ++++||+.. ...++|+.++++++|.+.|. ++
T Consensus 331 ~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~-~~ 406 (410)
T PRK06290 331 GGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLS-DV 406 (410)
T ss_pred CeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEcccccccchhHHHHHHHHHHh-hc
Confidence 6666665 4432110 025778999999885 5555653 468999953 23588999999999999998 65
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-27 Score=229.61 Aligned_cols=328 Identities=16% Similarity=0.132 Sum_probs=215.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALK 150 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~al~ 150 (470)
++||.++.+. -..+|++.+++.+.......++. ....++++.+++++.+.+| .+ +|++|+|+++|+..++.
T Consensus 2 ~~~~~~g~p~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~ 78 (350)
T TIGR03537 2 LFDFGTGDPK---EPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPL 78 (350)
T ss_pred eEeccCCCCC---CCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHH
Confidence 5788888543 22578899998887654322221 1223556667777665544 44 89999999999999887
Q ss_pred HHHHhchhcccCCCCC--cEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 151 LARKWGYVKKKFSIDE--AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~--~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
.+.. +|+ +.|++..|+|.+........+..... .+..+ +...+ |++++++++.+ ++++
T Consensus 79 ~~~~---------~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~~---d~~~l~~~~~~---~~~~ 139 (350)
T TIGR03537 79 VFID---------PEEDRRRVIFGTPGYPVYERGALFAGGEPTA----VKLKKEDGFLL---RLEKVEKSILE---ETKI 139 (350)
T ss_pred HHcC---------CCCCCceEEEcCCCCcchHHHHHhcCCEEEE----cccCcccCCcc---CHHHHHHhhhh---ccEE
Confidence 6654 342 58888999997766554433322111 11110 11122 78999998876 6788
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC--cceeecccccc-CCCcceeE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKALG-GGVIPVSA 304 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~--pdi~s~sK~l~-gG~~~ig~ 304 (470)
+++++++||||.++ +.+.+++|.++|++||+++|+||+|..+...+........+.. .-+.+|||.++ +|+ |+||
T Consensus 140 i~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~Gl-RiG~ 217 (350)
T TIGR03537 140 VWINYPHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGY-RSGF 217 (350)
T ss_pred EEEeCCCCCcCccc-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccc-ccee
Confidence 88666699999999 9999999999999999999999999865333322211111111 12338999996 898 9999
Q ss_pred EEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee-E
Q 012138 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF-N 382 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~-~ 382 (470)
+++++++.+.+.......+.+.+++.+.++.+++..-. ....+++++++.+.+.+.|++. .+....+.|.+ +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~------g~~~~~~~g~~~~ 291 (350)
T TIGR03537 218 VAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV------GLEYLYPDATFYL 291 (350)
T ss_pred eecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC------CCcccCCCeEEEE
Confidence 99999998887654333344455566666655553110 0234455555555565555543 13333455555 4
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
++.++.. .++.++++.|.++||.+.|+. .+++|++. ..+++++++++++|++
T Consensus 292 ~~~~~~~---~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~--~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 292 WVKVPSG---IDAKDYALRLLENGIVVAPGENFGSGEEGYVRVAL--VPTLEECEEALRLWER 349 (350)
T ss_pred EEECCCC---CCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHhc
Confidence 5555432 257889999999999998752 57899994 4688999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=232.97 Aligned_cols=332 Identities=14% Similarity=0.084 Sum_probs=213.8
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhh------CCCeEEecCChhHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGV 145 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~------~~~~v~~~~sGteA~ 145 (470)
..++|+..|... ...+|.+.+++.+.+... ..++.....++++.+++++.+.. ..++|++|+|+++++
T Consensus 28 ~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 28 IQLDRLDTNEFP---YDLPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred cceeEecCCCCC---CCCCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 358888888543 227789999999877652 11222222344555555555432 345799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~ 224 (470)
..++.+... +++..|++..|+|.+........+... .. .+...+.+.+ |+++|++++++.. .+
T Consensus 105 ~~~~~~~~~---------~g~~~Vlv~~P~y~~~~~~~~~~g~~~-~~---~~~~~~~~~~---d~~~l~~~~~~~~~~~ 168 (374)
T PRK02610 105 RSLLIATCL---------GGEGSILVAEPTFSMYGILAQTLGIPV-VR---VGRDPETFEI---DLAAAQSAIEQTQNPP 168 (374)
T ss_pred HHHHHHHcC---------CCCCeEEEcCCChHHHHHHHHHcCCEE-EE---ecCCcccCCC---CHHHHHHHHHhhcCCC
Confidence 877765543 354478999999976554433332211 10 1111111222 7899999887411 26
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCccee
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig 303 (470)
+++|++.+++||||.++ +++.+++|.++| +|++||+||+|..|.............-..-+.||||.++ +|+ |+|
T Consensus 169 ~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~Gl-RiG 244 (374)
T PRK02610 169 VRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAH-RVG 244 (374)
T ss_pred ceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCccc-cee
Confidence 78887555599999999 888999999887 4999999999998742211111111110112449999996 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL---GEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~---~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
|+++++++++.+.... ..++.+.+++.++.++++.. +.+.++.+.. ++.+.+.|+. ++ .+...+..|.
T Consensus 245 ~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r~~l~~~L~~----~~-~~~~~p~~g~ 315 (374)
T PRK02610 245 YAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHR--QELLAAIPEILQERDRLYQALQE----LP-QLRVWPSAAN 315 (374)
T ss_pred eeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHh----CC-CcEeCCCcce
Confidence 9999999998886533 34566788888877777532 2222222222 3334344433 33 2333345566
Q ss_pred eEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 381 FNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|+++.++.. .+..++++.|.++||.+.+. .+++||+. . +.+++++++++|+++++ ++.
T Consensus 316 f~~~~l~~~---~~~~~~~~~l~~~gi~v~~~-~~~lRls~--~-~~~~~~~~l~~l~~~l~-~~~ 373 (374)
T PRK02610 316 FLYLRLSQD---AALAALHQALKAQGTLVRHT-GGGLRITI--G-TPEENQRTLERLQAALT-QLE 373 (374)
T ss_pred EEEEeCCCC---CCHHHHHHHHHHCCEEEEeC-CCeEEEeC--C-CHHHHHHHHHHHHHHHh-hcC
Confidence 666655432 26788999999999999765 57899994 3 46789999999999988 653
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=234.66 Aligned_cols=338 Identities=13% Similarity=0.124 Sum_probs=223.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA 144 (470)
.|+.++||..+... ++ .++.+.+++.+.++.. .+.......++++.+++++.+.+| .+ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~~p~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMGNPD--LP-TPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCCCCC--CC-CCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 46678899877433 22 4688888888776431 111111233556677777765544 35 79999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHh
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKE 220 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~ 220 (470)
+..++..+.. +|+ .|++.+|+|.+........+.. +..++. +++++++++++.
T Consensus 105 l~~~~~~l~~---------~gd-~Vl~~~P~y~~~~~~~~~~g~~-------------v~~v~~~~~~~~~~~l~~~~~~ 161 (405)
T PRK09148 105 FANMAQAITA---------PGD-VILCPNPSYPIHAFGFIMAGGV-------------IRSVPAEPDEEFFPALERAVRH 161 (405)
T ss_pred HHHHHHHhcC---------CCC-EEEEcCCCCcccHHHHHhcCCE-------------EEEEeCCCCCCCccCHHHHHhh
Confidence 9999887754 455 7888899997764433322211 111111 134556666654
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC----CCCcceeeccccc
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE----EVRPDMVILGKAL 295 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~----~~~pdi~s~sK~l 295 (470)
+..++++++++.++||||.++ +.+.+++|.++|++||++||+||+|..|.+.+..+ ..... +....+.||||.+
T Consensus 162 ~~~~~~~v~l~~P~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~ 240 (405)
T PRK09148 162 SIPKPIALIVNYPSNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF 240 (405)
T ss_pred ccccceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc
Confidence 434677777554499999999 89999999999999999999999999765444221 11111 1112245999999
Q ss_pred c-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 296 G-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 296 ~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
+ +|+ |+||+++++++++.+.......+++.+.+++.++.+.|+.-++ +.+++.++++.+.+.+.|++++ +
T Consensus 241 ~~pGl-R~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~ 313 (405)
T PRK09148 241 SMAGW-RMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRAG------W 313 (405)
T ss_pred CCcch-heeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC------C
Confidence 8 998 9999999999998886544434566677787877777752111 3345556666666766666531 2
Q ss_pred EEEecc-ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 373 KEVRGR-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 373 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
....+. |.|+++.+..........++++.|. ++||.+.|+. .+++||+. ..+.+++++++++|.+++. +
T Consensus 314 ~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~--~~~~~~l~~al~~l~~~l~-~ 390 (405)
T PRK09148 314 DIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL--VENEQRIRQAARNIKRFLS-S 390 (405)
T ss_pred ccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH-H
Confidence 333344 4455555533210113567888876 6799998862 47999995 4689999999999999998 6
Q ss_pred cCC
Q 012138 445 LPK 447 (470)
Q Consensus 445 ~~~ 447 (470)
..+
T Consensus 391 ~~~ 393 (405)
T PRK09148 391 ADE 393 (405)
T ss_pred HHH
Confidence 654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=232.06 Aligned_cols=332 Identities=14% Similarity=0.073 Sum_probs=216.8
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCCCcHHHHHHHHhhhhCC-----C-eEEecCChhHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFGY-----D-MVLPMNTGAEGV 145 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~-----~-~v~~~~sGteA~ 145 (470)
.|+.++|+..+....+ .++.+.+++.+.+.....++ .....++++.+++++.+.+|. + +|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~p~~~---~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGEPKHP---TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCCCCCC---CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 4788899988854322 57888898887765433222 122345677777777665552 3 799999999999
Q ss_pred HHHHHHHHHhchhcccCCC-C-CcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcC
Q 012138 146 ETALKLARKWGYVKKKFSI-D-EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~-g-~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~ 222 (470)
..+++++.. + + ++.|++..|+|.+........+.. ... .|..++ .+.+ |+++|++.+.+
T Consensus 104 ~~~~~~l~~---------~~~~gd~vlv~~P~y~~~~~~~~~~g~~-~~~---vp~~~~~~~~~---d~~~l~~~~~~-- 165 (396)
T PRK09147 104 FAFAQTVID---------RDGPGPLVVCPNPFYQIYEGAALLAGAE-PYF---LNCDPANNFAP---DFDAVPAEVWA-- 165 (396)
T ss_pred HHHHHHHcC---------CCCCCCEEEEcCCCccchHHHHHhcCCE-EEE---eccCccccCcc---CHHHHHHHHhh--
Confidence 999987764 3 1 247888899997654433222221 111 111111 1122 78999887765
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC--ccc-c---ccCC-----CCcceeec
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR--MLA-S---DWEE-----VRPDMVIL 291 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~--~~~-~---~~~~-----~~pdi~s~ 291 (470)
+++++++..++||||.++ +++.+++|.++|++||++||+||+|..|.+.+. ... . ...+ ...-+.||
T Consensus 166 -~~k~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 243 (396)
T PRK09147 166 -RTQLLFVCSPGNPTGAVL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSL 243 (396)
T ss_pred -ccEEEEEcCCCCCcCccC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecc
Confidence 677777444499999999 999999999999999999999999997654442 111 1 0111 11123499
Q ss_pred ccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 292 GKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
||.++ +|+ |+||+++++++++.+.......+++.+++.+.++.+.+..-.. ...++.++++.+.+.+.|++.
T Consensus 244 SK~~~~~Gl-RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----- 317 (396)
T PRK09147 244 SKRSNVPGL-RSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV----- 317 (396)
T ss_pred ccccCCccc-eeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 99875 898 9999999999988776433334456777777777666631100 223344455555555555442
Q ss_pred CceEEEec-cceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------------CCEEEEecCCCCCHHHHHHHHH
Q 012138 370 NYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------------DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 370 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------------~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
+....+ .|.++++.+. . +..++++.|. ++||.+.|+. .+++|++ +..++++++++++
T Consensus 318 --~~~~~p~~g~f~~~~~~--~---~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~--~~~~~~~l~~~l~ 388 (396)
T PRK09147 318 --LDVQLPDAGFYLWAKVP--G---DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA--LVAPLAECVEAAE 388 (396)
T ss_pred --cCCCCCCeeEEEEEECC--C---CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE--ecCCHHHHHHHHH
Confidence 122233 4555555543 2 4577888876 5699997752 4789999 4567899999999
Q ss_pred HHHHHHh
Q 012138 436 ALHDVLE 442 (470)
Q Consensus 436 ~l~~~l~ 442 (470)
+|.++++
T Consensus 389 rl~~~~~ 395 (396)
T PRK09147 389 RIVDFCR 395 (396)
T ss_pred HHHHHhc
Confidence 9998875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=235.15 Aligned_cols=328 Identities=14% Similarity=0.109 Sum_probs=214.4
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCCCcHHHHHHHHhhhhC-CCeEEecCChhHHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-~~~v~~~~sGteA~~~al~~~~ 153 (470)
..+||..+. +.....|.+.+++.+.......++ .....++++.+++++....+ .++|++|+|+++|+..+++++.
T Consensus 86 ~~i~L~~g~---p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~ 162 (431)
T PRK15481 86 PLHDLAGGN---PDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL 162 (431)
T ss_pred hhhhhhcCC---CChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC
Confidence 456666662 222234667777766554332221 11223344455555443333 3589999999999999999776
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc-
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP- 232 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep- 232 (470)
. +|+ .|++.+|+|.+........+..... .+...+ .+ |+++|++++++ +++++++.|
T Consensus 163 ~---------pgd-~Vlv~~P~y~~~~~~~~~~g~~~~~----v~~~~~--g~---~~~~l~~~~~~---~~k~i~~~p~ 220 (431)
T PRK15481 163 L---------PGD-SVAVEDPCFLSSINMLRYAGFSASP----VSVDAE--GM---QPEKLERALAQ---GARAVILTPR 220 (431)
T ss_pred C---------CCC-EEEEeCCCcHHHHHHHHHcCCeEEe----eccCCC--CC---CHHHHHHHHhc---CCCEEEECCC
Confidence 5 555 8899999997665444433322110 111111 12 78999998875 577777653
Q ss_pred ccCCCccccCChhhHHHHHHHHHhc-CcEEEEeccccCCcccCCcccccc-CCCCcceeeccccccCCCcceeEEEecHH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKY-NILMIADEIQSGLARSGRMLASDW-EEVRPDMVILGKALGGGVIPVSAVLADKE 310 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~-gillI~Dev~~g~g~~G~~~~~~~-~~~~pdi~s~sK~l~gG~~~ig~v~~~~~ 310 (470)
+|||||.++ +.+.+++|.++|++| +++||+||+|..|...+....... .....-+-||||.+++|+ |+||++++++
T Consensus 221 p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~Gl-RiG~~i~~~~ 298 (431)
T PRK15481 221 AHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDL-RLAFVASDSA 298 (431)
T ss_pred CCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCc-eeEEEeCCHH
Confidence 599999999 999999999999999 999999999998753331111111 111112349999999999 9999999999
Q ss_pred HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-ceeEEEE
Q 012138 311 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVE 385 (470)
Q Consensus 311 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g~~~~~~ 385 (470)
+++.+.......+++.+.+++.++.++|+.-. + ..+++.++++.+.+.+.|++. .+....+. |.|+++.
T Consensus 299 ~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~------~~~~~~p~gg~f~~~~ 372 (431)
T PRK15481 299 TSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY------GIAIPSPGDGLNLWLP 372 (431)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc------CCccccCCCeEEEEEE
Confidence 98888543333445578888888887775311 0 234555566666666666553 12222344 4555544
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+. . +..++++.|.++||.+.|+. .+++||++.. .+++++++++++|.+++.
T Consensus 373 l~--~---~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 373 LD--T---DSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN 430 (431)
T ss_pred CC--C---CHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence 43 2 45788999999999998852 3589999653 578999999999999876
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=234.58 Aligned_cols=330 Identities=14% Similarity=0.162 Sum_probs=221.0
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA~~~a 148 (470)
.++||..|... ...++.+.+++.+.++.... .......++++.+++++.+.++. +++++|+|+++|+..+
T Consensus 31 ~~i~l~~g~~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~ 107 (386)
T PRK09082 31 GAINLSQGFPD---FDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAA 107 (386)
T ss_pred CEEEecCCCCC---CCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHH
Confidence 46788887543 22578899998887764322 11222345677888888877654 2699999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
+..+.. +|+ .|++..++|.+........+. ..... +...+...+ |++++++++++ ++++|
T Consensus 108 ~~~~~~---------~gd-~Vli~~p~y~~~~~~~~~~g~-~~~~~---~~~~~~~~~---d~~~l~~~~~~---~~~~v 167 (386)
T PRK09082 108 ILALVR---------PGD-EVIVFDPSYDSYAPAIELAGG-RAVRV---ALQPPDFRV---DWQRFAAAISP---RTRLI 167 (386)
T ss_pred HHHHcC---------CCC-EEEEeCCCchhhHHHHHHcCC-EEEEE---ecCcccccC---CHHHHHHhcCc---cceEE
Confidence 987654 455 788888887654332222211 11110 110111122 78999988865 67888
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cc-cccCCCCc---ceeecccccc-CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LA-SDWEEVRP---DMVILGKALG-GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~-~~~~~~~p---di~s~sK~l~-gG~~~i 302 (470)
+++.++||+|.++ +++.+++|.++|++||+++|+||+|..+.+.+.. .. ....+... -+.+|||.++ +|+ |+
T Consensus 168 ~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~-Ri 245 (386)
T PRK09082 168 ILNTPHNPSGTVW-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGW-KV 245 (386)
T ss_pred EEeCCCCCCCcCC-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhh-hh
Confidence 8666699999999 8999999999999999999999999876544321 11 11122221 2349999996 898 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
||+++++++++.+........++.+.+.+.++.+.++...+ +.+++.++++.+.+.+.|++. .+....+.|.
T Consensus 246 G~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~~~g~ 319 (386)
T PRK09082 246 GYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS------RFKLLPCEGT 319 (386)
T ss_pred hhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC------CCcccCCCee
Confidence 99999999998887654445667788887777666642111 234555667777777777653 2333345666
Q ss_pred eEEE-EeccCCCchhHHHHHHHH-HHcCceeccCC--------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 381 FNAV-EFDKTALPVSAYDICLKM-KERGILAKPTH--------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 381 ~~~~-~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~--------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
++.| .+.... +.+..++++.| .+.||.+.|+. .+++|++. ..+++++++++++|++
T Consensus 320 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~--~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 320 YFQLVDYSAIS-DLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF--AKQEETLDAAAERLCQ 385 (386)
T ss_pred EEEEEeccccC-CCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe--cCCHHHHHHHHHHHhh
Confidence 5555 543211 13577898887 46699988763 36899995 4689999999999875
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=231.77 Aligned_cols=330 Identities=14% Similarity=0.171 Sum_probs=214.8
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~ 145 (470)
|..++|+..+.... ..++.+.+++.+.+.... +.......++++.+++++.+.+| .+ .+++|+|+++++
T Consensus 30 ~~~~i~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i 106 (385)
T PRK09276 30 GVDVISLGIGDPDL---PTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGI 106 (385)
T ss_pred CCCEEEecCCCCCC---CCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 44567888774332 257888999988876421 11111223456666666665444 33 488899999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..+++.+.. +|+ .|++.+|+|.+........+.. ... .+...+ ...+ |++++++.+.+ +
T Consensus 107 ~~~~~~~~~---------~gd-~Vl~~~P~y~~~~~~~~~~g~~-~~~---v~~~~~~g~~~---d~~~l~~~~~~---~ 166 (385)
T PRK09276 107 AHIPLAFVN---------PGD-VVLVPDPGYPVYKIGTIFAGGE-PYF---MPLKEENGFLP---DLDAIPEDVAK---K 166 (385)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCCcChHHHHHHcCCE-EEE---EecCCCCCCcC---CHHHHHHhccc---c
Confidence 999887754 455 7888999986654433322221 110 011111 1112 78888887764 6
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----ccccc-CCCCcceeecccccc-CC
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDW-EEVRPDMVILGKALG-GG 298 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~-~~~~pdi~s~sK~l~-gG 298 (470)
+++|++++++||||.++ +.+.+++|.++|++||++||+||+|..|...+.. ...+. .+....+.||||.++ +|
T Consensus 167 ~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 167 AKLMFINYPNNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred ceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc
Confidence 78888665599999999 9999999999999999999999999976544321 11111 122234569999997 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+||+++++++++.+.........+.+.+.+.++..+++..+. +.+++.++++++.+.+.|+++ .+....
T Consensus 246 l-RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~ 318 (385)
T PRK09276 246 W-RIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL------GLEVEP 318 (385)
T ss_pred h-hheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC------CCcccC
Confidence 8 9999999999988876533222334556666666666642211 334555666666676666653 133334
Q ss_pred cccee-EEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 377 GRGLF-NAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 377 ~~g~~-~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+.|.+ +++.++.. .+..+++++|++ +||.+.|+. ++++||++ ..+++++.+++++|.+
T Consensus 319 ~~~~~~~~v~~~~~---~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 319 PKATFYVWAPVPKG---YTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL--TVPDERIEEAVERIKK 384 (385)
T ss_pred CCcceEEEEECCCC---CCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHhh
Confidence 55555 45544432 267788888875 699998862 47999995 4678888888888764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=231.93 Aligned_cols=330 Identities=15% Similarity=0.118 Sum_probs=214.6
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~ 145 (470)
|..++||..+. +....+|.+.+++.+.++... +.+.....++++++++++.+.+| .+ +|++|+|+++++
T Consensus 31 ~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l 107 (389)
T PRK08068 31 GHDVINLGQGN---PDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGL 107 (389)
T ss_pred CCCeEEecCCC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHH
Confidence 44578888773 334467889999988876421 11122234456666666654434 35 699999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..++.++.. +|+ .|++..|+|..........+..... .+...+ ...+ |++++++.+.+ +
T Consensus 108 ~~~~~~~~~---------~gd-~vlv~~P~y~~~~~~~~~~g~~~~~----i~~~~~~~~~~---d~~~l~~~~~~---~ 167 (389)
T PRK08068 108 VELPQCLMN---------PGD-TILVPDPGYPDYLSGVALARAQFET----MPLIAENNFLP---DYTKIPEEVAE---K 167 (389)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHhcCCEEEE----eecccccCCCC---CHHHHHHhccc---c
Confidence 988876654 455 7888999986554433322221100 111111 1111 68888888754 6
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccc-cccCCC---Ccceeecccccc-CC
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLA-SDWEEV---RPDMVILGKALG-GG 298 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~-~~~~~~---~pdi~s~sK~l~-gG 298 (470)
+++|++..++||||.++ +.+.+++|.++|++||++||+||+|..|.+.+. ... ....+. ...+.||||.++ +|
T Consensus 168 ~~~v~l~~P~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 168 AKLMYLNYPNNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred ceEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc
Confidence 77777543399999999 999999999999999999999999987765542 211 121221 123459999997 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+||+++++++++.+.........+.+++.+.++.+++..-.+ +.+++.++++++.+.+.|++++ +...+
T Consensus 247 l-RiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~g------~~~~~ 319 (389)
T PRK08068 247 W-RVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREIG------WEVDA 319 (389)
T ss_pred c-eeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC------CcccC
Confidence 8 9999999999998876443322334444455555555531111 3456666667777777776531 33345
Q ss_pred ccceeE-EEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 377 GRGLFN-AVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 377 ~~g~~~-~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+.|.++ ++.++.. .++.++++.|++ +||.+.|+. .+++||+. ..+++.+.+++++|.+
T Consensus 320 ~~g~~~~~v~~~~~---~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~ 385 (389)
T PRK08068 320 PKGSFFAWMPVPKG---YTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL--LTDEERLREAVERIGK 385 (389)
T ss_pred CCeeEEEEEECCCC---CCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE--cCCHHHHHHHHHHHHH
Confidence 666655 5555432 267889999986 599998752 57999995 4677888888888865
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=230.84 Aligned_cols=330 Identities=15% Similarity=0.184 Sum_probs=216.5
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC----C-eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY----D-MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~----~-~v~~~~sGteA~ 145 (470)
|..++||..|... ++ .++.+.+++.+.+.... +.......++++.+++++.+.++. + .|++|+|+++++
T Consensus 28 ~~~~~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l 104 (383)
T TIGR03540 28 GVDVISLGIGDPD--LP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGI 104 (383)
T ss_pred CCCeEEeCCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHH
Confidence 5567788877533 22 57888898888775321 111112234566677776655432 4 588999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..+++.+.. +|+ .|++..|+|.+........+... .. .+...+ ...+ |++++++.+.+ +
T Consensus 105 ~~~~~~~~~---------~gd-~vlv~~P~y~~~~~~~~~~G~~v-~~---v~~~~~~g~~~---d~~~l~~~~~~---~ 164 (383)
T TIGR03540 105 AHIPLAFVN---------PGD-IVLVPDPGYPVYRIGTLFAGGEP-YE---MPLKEENGFLP---DFDAIPEDIAK---K 164 (383)
T ss_pred HHHHHHhCC---------CCC-EEEEeCCCCcchHHHHHhcCCEE-EE---EecCcccCCcc---CHHHHHhhccc---c
Confidence 999887654 455 88889999877654433332211 10 011111 1112 78888888764 6
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cc---ccc-CCCCcceeecccccc-CC
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LA---SDW-EEVRPDMVILGKALG-GG 298 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~---~~~-~~~~pdi~s~sK~l~-gG 298 (470)
+++|+++.++||||.++ +.+.+++|.++|++||++||+||+|..+.+.+.. .. .+. .+....+.+|||.++ +|
T Consensus 165 ~~~v~i~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~G 243 (383)
T TIGR03540 165 AKLMFINYPNNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG 243 (383)
T ss_pred ceEEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCcc
Confidence 78888664499999999 9999999999999999999999999976544421 11 111 112234559999997 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+||+++++++++.+.........+.+.+.+.++.++++...+ +.+++.++++.+.+.+.|++. .+....
T Consensus 244 l-RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~ 316 (383)
T TIGR03540 244 W-RIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI------GIDVEK 316 (383)
T ss_pred c-eeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC------CCEecC
Confidence 8 9999999999988876433323334566667776666643211 334555666666666666653 233344
Q ss_pred cccee-EEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 377 GRGLF-NAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 377 ~~g~~-~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+.|.+ +++.++.. .+..+++++|. ++||.+.|+. .+++||+. ..+++++++++++|.+
T Consensus 317 ~~~~~~~~~~l~~~---~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~--~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 317 PKATFYVWVPVPEG---YTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISL--TVPDERLEEAVARIKK 382 (383)
T ss_pred CCcceEEEEECCCC---CCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEe--cCCHHHHHHHHHHHhh
Confidence 55555 55554432 36778999875 5799998762 47899995 4678889988888864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-26 Score=228.59 Aligned_cols=332 Identities=14% Similarity=0.119 Sum_probs=218.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc--ccCCCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT--LSSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~~~ 147 (470)
|..++++..|....+ .++.+.+++.+.+.... +.+.....++++.+++++.+.+ ..++|++|+|+++|+..
T Consensus 31 ~~~~i~l~~g~~~~~---~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 107 (387)
T PRK08960 31 GHDVIHLEIGEPDFT---TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL 107 (387)
T ss_pred CCCeEEeCCCCCCCC---CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence 445678877755422 57889999988886421 1111223345566666665443 35689999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.++.. +|+ .|++.+++|............. ... .+...+ ...+ |++++++++++ +++
T Consensus 108 ~~~~~~~---------~gd-~vlv~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~~---d~~~l~~~~~~---~~~ 167 (387)
T PRK08960 108 ASSLLVD---------PGK-HWLLADPGYPCNRHFLRLVEGA-AQL---VPVGPDSRYQL---TPALVERHWNA---DTV 167 (387)
T ss_pred HHHHhcC---------CCC-EEEEcCCCCcchHHHHHhcCCe-EEE---EecCcccCCCC---CHHHHHHHhCc---cce
Confidence 9987654 455 7888999986654433322211 110 111111 1112 78999988875 455
Q ss_pred EEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee---ecccccc-CCCcc
Q 012138 227 GFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV---ILGKALG-GGVIP 301 (470)
Q Consensus 227 ~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~---s~sK~l~-gG~~~ 301 (470)
+++ ++| +||||.++ +.+.+++|+++|++||+++|+||+|.++.+.+.... .....++++ ||||.++ +|+ |
T Consensus 168 ~i~i~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~g~~Gl-R 242 (387)
T PRK08960 168 GALVASP-ANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGVDAAS--VLEVDDDAFVLNSFSKYFGMTGW-R 242 (387)
T ss_pred EEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC--hhhccCCEEEEeecccccCCccc-E
Confidence 555 565 99999999 899999999999999999999999998754432211 122334443 7999997 898 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
+||+++++++++.+.......+.+.+.+.+.++.++++. ..+ ..+++.++++.+.+.+.|++. + ......+.
T Consensus 243 iG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~p~ 317 (387)
T PRK08960 243 LGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL----G-FGIAVEPQ 317 (387)
T ss_pred EEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc----C-CcCCcCCC
Confidence 999999999998876544444556688888887777742 111 233444555566666666553 1 11112344
Q ss_pred -ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 -GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 -g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.|+++.+.... .+..+++++|. ++||.+.|+. ++++|+++. .+.+++.+++++|.++++
T Consensus 318 g~~f~~~~~~~~~--~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 318 GAFYLYADISAFG--GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQEAVERIARGLR 386 (387)
T ss_pred eeEEEEEeccccC--CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 455555554311 25678888876 5699998762 469999965 478899999999988775
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-27 Score=230.81 Aligned_cols=322 Identities=14% Similarity=0.141 Sum_probs=221.4
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~ 151 (470)
++.++|+..|... ++ .+|++.+++.+.+..... |+..-..++.+.++++++ .++|++++|+++++..++++
T Consensus 28 ~~~~i~l~~nen~--~~-~~~~v~~a~~~~~~~~~~----Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~ 100 (366)
T PRK01533 28 DHSFVKLASNENP--FG-CSPRVLDELQKSWLDHAL----YPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRA 100 (366)
T ss_pred CCceEEeCCCCCC--CC-CCHHHHHHHHHHHHhcCc----CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH
Confidence 4567898887533 33 788999999887655432 223334667777777775 56899999999999999987
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
+.. +|+ .|++..|+|.+....+...+.. ... .+.. ...+ |+++|++++++ +++++++.
T Consensus 101 l~~---------~gd-~vlv~~P~y~~~~~~~~~~g~~-v~~---v~~~--~~~~---d~~~l~~~~~~---~~~~v~i~ 158 (366)
T PRK01533 101 VLK---------AGD-NIVTAGATFPQYRHHAIIEGCE-VKE---VALN--NGVY---DLDEISSVVDN---DTKIVWIC 158 (366)
T ss_pred hcC---------CCC-EEEEcCCcHHHHHHHHHHcCCE-EEE---eecC--CCCc---CHHHHHHHhCc---CCcEEEEe
Confidence 754 455 7888899986654433322211 110 0110 0112 79999988865 56666644
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCc---ceeecccccc-CCCcceeEEE
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRP---DMVILGKALG-GGVIPVSAVL 306 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~p---di~s~sK~l~-gG~~~ig~v~ 306 (470)
.++||||.++ +.+.+++|.++|++++ ++|+||+|..|...+... ........+ -+.||||.++ +|+ |+||++
T Consensus 159 ~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl-RiG~~i 235 (366)
T PRK01533 159 NPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASF-RVGYAV 235 (366)
T ss_pred CCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHH-HHhHHh
Confidence 4499999999 8999999999999877 567799998764332110 011111112 2349999999 998 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
+++++++.+.... ..++.+.+++.++.++|+.-+ .+.+.+..++..+++.+.++.+ .+....+.|.|+++.
T Consensus 236 ~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~------g~~~~~~~~nf~~~~ 307 (366)
T PRK01533 236 GHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN------EIPFYQSQTNFIFLP 307 (366)
T ss_pred CCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC------CCccCCCcCcEEEEe
Confidence 9999998886433 457889999999988885211 0223334444444454444443 233446788888887
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+. ++.++.+.|+++||.+.+. ++++|++ ..+.++.++++++|+++++ ..+
T Consensus 308 ~~------~~~~~~~~l~~~GI~Vr~~-~~~iRis---~~~~~~~~~l~~al~~~~~-~~~ 357 (366)
T PRK01533 308 VE------NGGEIYEACAHAGFIIRPF-PNGVRIT---VGTREQNEGVISVLQQHFE-NKK 357 (366)
T ss_pred CC------CHHHHHHHHHHCCcEEccC-CCceEEe---CCCHHHHHHHHHHHHHHHH-hcc
Confidence 63 3467999999999999986 6889999 5788999999999999988 443
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=223.61 Aligned_cols=320 Identities=16% Similarity=0.197 Sum_probs=227.6
Q ss_pred CCHHHHHHHHHHHHHcc--ccCC-CCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHHHHHHHHhchhcccCC
Q 012138 92 CHPKIMKALQEQAEKLT--LSSR-AFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~--~~~~-~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
.+..|.+++.+.++... .+++ ....+++..|++.++++++ .++|++|+|+.+|+..++.....
T Consensus 45 ~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--------- 115 (420)
T KOG0257|consen 45 PPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--------- 115 (420)
T ss_pred CcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC---------
Confidence 56778888888887641 1222 2356678888999988764 45799999999999999988876
Q ss_pred CCCcEEEEEccCccccccchhcccCCccccc---CCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIR---GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
+|| .||+++|.|..+......+++.+.+.. ..+....+.+.+ |.++||.++++ +|++|+++.++||+|.+
T Consensus 116 ~GD-eVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~---D~~~le~~~t~---kTk~Ii~ntPhNPtGkv 188 (420)
T KOG0257|consen 116 PGD-EVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTL---DPEELESKITE---KTKAIILNTPHNPTGKV 188 (420)
T ss_pred CCC-EEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccC---ChHHHHhhccC---CccEEEEeCCCCCcCcc
Confidence 566 778888888766665555555433311 111111223333 89999999998 89999977769999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc---cccc--cCCCCcceeecccccc-CCCcceeEEEecHHHHhh
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM---LASD--WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLC 314 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~---~~~~--~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~ 314 (470)
+ ++++|++|+++|++||+++|+||||.-+.+.|.- ++.. .+.....+.++||.++ .|+ |+||+++++.++..
T Consensus 189 f-sReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGW-rlGW~igp~~L~~~ 266 (420)
T KOG0257|consen 189 F-SREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGW-RLGWAIGPKHLYSA 266 (420)
T ss_pred c-CHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeee-eeeeeechHHhhhh
Confidence 9 9999999999999999999999999977777752 2211 1223345669999999 899 99999999988888
Q ss_pred cCcCCccCCCCCCHHHHHHHHHHHHHHh---h-------hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 315 IQPGEHGSTFGGNPLASAVAIASLDVIR---D-------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 315 ~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~-------~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
..+......|..+...+.|..+++..-. + .++.+.++++++.+.+.|.+++ +....++|.++.|
T Consensus 267 ~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg------~~v~~p~gayyl~ 340 (420)
T KOG0257|consen 267 LFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELG------LKVTGPEGAYYLW 340 (420)
T ss_pred HHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcC------CccccCCCceEEE
Confidence 8776666667655555555444444311 1 2367778889999999998873 3344677777766
Q ss_pred EeccC--CC---------chhHHHHHHHHHHc-CceeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 385 EFDKT--AL---------PVSAYDICLKMKER-GILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 385 ~~~~~--~~---------~~~~~~~~~~l~~~-Gv~~~~~~-----------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
.+.. .. ..+...++.+|.++ |+.+.|.+ .+.+|++ +..+++.++.++++|+
T Consensus 341 -adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~--~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 341 -ADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFC--FCKADETLRKAIERLK 414 (420)
T ss_pred -EeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence 3332 10 01234567777766 88877653 4677887 6778888888888887
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=227.98 Aligned_cols=322 Identities=17% Similarity=0.201 Sum_probs=217.4
Q ss_pred CCC-eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHH
Q 012138 73 EGN-KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETAL 149 (470)
Q Consensus 73 ~G~-~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al 149 (470)
.|+ .++++..|... ++ .+|++.+++.+.+..... |......+|.+.++++++. ++|++++|+++++..++
T Consensus 29 ~g~~~~~~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~ 101 (369)
T PRK08153 29 RGRPFRARIGANESG--FG-PSPSVIAAMREAAAEIWK----YGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIV 101 (369)
T ss_pred cCCcceeEecCCCCC--CC-CCHHHHHHHHHHHHHhhc----CCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHH
Confidence 344 35688877433 23 778999999887654322 2222256788888888764 57999999999999988
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHhcCCCe
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQI 225 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~~~~~~ 225 (470)
+++.. +|+ .|++..|+|.+........+.. ...+|+ .|++++++.+.+. ++
T Consensus 102 ~~~~~---------~gd-~vlv~~p~y~~~~~~~~~~g~~-------------~~~vp~~~~~~~~~~l~~~~~~~--~~ 156 (369)
T PRK08153 102 RLYVE---------PGD-PVVTSLGAYPTFNYHVAGFGGR-------------LVTVPYRDDREDLDALLDAARRE--NA 156 (369)
T ss_pred HHhcC---------CCC-EEEECCCcchHHHHHHHHcCCe-------------EEEeeCCCCCCCHHHHHHHhccc--CC
Confidence 87654 455 7888888886654332222211 112222 1677776655432 66
Q ss_pred EEEEE-ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc---eeecccccc-CCCc
Q 012138 226 AGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD---MVILGKALG-GGVI 300 (470)
Q Consensus 226 ~~vi~-epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd---i~s~sK~l~-gG~~ 300 (470)
++|++ +| +||||.++ +.+.+++|.++|++ |++||+||+|..|++.|....+.. ..++ +.||||.++ +|+
T Consensus 157 ~~i~l~~P-~NPtG~~~-~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~~--~~~~~i~~~SfSK~~g~~Gl- 230 (369)
T PRK08153 157 PLVYLANP-DNPMGSWH-PAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPIDT--DDPNVIRMRTFSKAYGLAGA- 230 (369)
T ss_pred cEEEEeCC-CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhhh--cCCCEEEEecchHhccCcch-
Confidence 77764 65 99999999 88888999888874 999999999998876553322211 1233 349999998 998
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g 379 (470)
|+||+++++++++.+.... .+++.++++++++.++|+.-+ .+.+++..+++.+++.+.|++. + +...+..|
T Consensus 231 RiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~----g--~~~~p~~~ 302 (369)
T PRK08153 231 RVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN----G--LTPLPSAT 302 (369)
T ss_pred heeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----C--CccCCCcC
Confidence 9999999999998876432 357789999999988885210 0223344444444454444432 1 33334556
Q ss_pred eeEEEEeccCCCchhHHHHHHHHHHcCceec-cC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMKERGILAK-PT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.|+++.+..+. ..+..+.++|.++||.+. |+ ..+++|++. .++++++.++++|++++. .++
T Consensus 303 ~f~~~~~~~~~--~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~---~~~~~~~~~~~al~~~~~-~~~ 367 (369)
T PRK08153 303 NFVAIDCGRDG--AFARAVLDGLIARDIFVRMPGVAPLDRCIRVSC---GPDEELDLFAEALPEALE-AAR 367 (369)
T ss_pred cEEEEECCCCc--ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHH-Hhh
Confidence 66666543221 257789999999999995 43 247999993 379999999999999987 654
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=229.24 Aligned_cols=342 Identities=15% Similarity=0.173 Sum_probs=218.0
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA 144 (470)
.|..++|+..+. +.+..++.+.+++.+.+... .+.......+++..+++++.+.++ .+ +|++|+|+++|
T Consensus 31 ~~~~~~~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMGN---PDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCcC---CCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 345678888773 33435666777777665432 121112234567778888776544 35 69999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCeeeecCCCHH----HHHHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDIT----ALEKIFK 219 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~----~Le~~l~ 219 (470)
+..+++++.. +|+ .|++.+|+|.+........+... ... +.. .+...+ |++ .++++++
T Consensus 108 l~~~~~~l~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~~-~~v---~~~~~~~~~~---d~~~l~~~l~~~~~ 170 (403)
T PRK08636 108 YVHLVQAITN---------PGD-VAIVPDPAYPIHSQAFILAGGNV-HKM---PLEYNEDFEL---DEDQFFENLEKALR 170 (403)
T ss_pred HHHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHhcCCEE-EEE---eccccccCcc---ChhhhhhHHHHHHh
Confidence 9999987764 455 88889999976544433322211 100 000 000112 444 4577776
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccccC-CCCcceeecccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDWE-EVRPDMVILGKA 294 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~~-~~~pdi~s~sK~ 294 (470)
++..++++++++.++||||.++ +.+.+++|.++|++|+++||+||+|..|...+.. ...+.. +....+.+|||.
T Consensus 171 ~~~~~~~~i~~~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 249 (403)
T PRK08636 171 ESSPKPKYVVVNFPHNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKS 249 (403)
T ss_pred hccCCceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccc
Confidence 5445678777554499999999 9999999999999999999999999987544422 111111 111123479999
Q ss_pred cc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 295 LG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 295 l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
++ +|+ |+||+++++++++.+........++.+.+.+.++..+++...+ +.+++.++++.+.+.+.|++. .
T Consensus 250 ~~~~Gl-RiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~ 322 (403)
T PRK08636 250 YNMAGW-RVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA------G 322 (403)
T ss_pred cCCccc-eeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC------C
Confidence 96 998 9999999999988876543333345555566655555532111 224444555555555555542 1
Q ss_pred eEEEec-cceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 012138 372 VKEVRG-RGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLEL 443 (470)
Q Consensus 372 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 443 (470)
+....+ .|.++++.++......+..++++.+. ++||.+.|+. .+++||+. ..+++++++++++|.++++
T Consensus 323 ~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~~~~rl~~~l~- 399 (403)
T PRK08636 323 WELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIAL--IENENRIRQAARNIKKFLK- 399 (403)
T ss_pred CcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH-
Confidence 333344 45555555543210123577887755 5799998862 57999995 4689999999999999998
Q ss_pred cc
Q 012138 444 DL 445 (470)
Q Consensus 444 ~~ 445 (470)
..
T Consensus 400 ~~ 401 (403)
T PRK08636 400 EL 401 (403)
T ss_pred hh
Confidence 64
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=228.29 Aligned_cols=317 Identities=16% Similarity=0.098 Sum_probs=209.9
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETA 148 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~a 148 (470)
+..++||..+. +....++.+.+++.+..+...+.......++++.+++++.+.++ .++|++|+|+++++..+
T Consensus 26 ~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~ 102 (364)
T PRK07865 26 PDGIVDLSVGT---PVDPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWL 102 (364)
T ss_pred CCCEEEcCCCC---CCCCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHH
Confidence 33567887774 33335688888887665433322222334567778888876543 46899999999999887
Q ss_pred HHHH-HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLA-RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~-~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+.++ .. +|+ .|++..++|.+........+. ..+.++++++++. .++++
T Consensus 103 ~~~l~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~---------------~~~~~~~~~~l~~------~~~~~ 151 (364)
T PRK07865 103 PTLLGLG---------PGD-VVVIPELAYPTYEVGARLAGA---------------TVVRADSLTELGP------QRPAL 151 (364)
T ss_pred HHHHcCC---------CCC-EEEECCCCcccHHHHHHhcCC---------------EEEecCChhhCCc------ccceE
Confidence 7665 23 455 788889998665433322211 1222234444432 26788
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccC--CCC----cceeecccccc-CCC
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWE--EVR----PDMVILGKALG-GGV 299 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~--~~~----pdi~s~sK~l~-gG~ 299 (470)
|+++.++||||.++ +.+.+++|.++|++||++||+||+|..+...++... .... +.. .-+.||||.++ +|+
T Consensus 152 v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 230 (364)
T PRK07865 152 IWLNSPSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGY 230 (364)
T ss_pred EEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCce
Confidence 88766699999999 899999999999999999999999998765553321 1110 101 12348999996 898
Q ss_pred cceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
|+||+++++++++.+........++.+.+.+.++.++|+..+. +..++.++++.+.+.+.|++. .+....+.
T Consensus 231 -RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~ 303 (364)
T PRK07865 231 -RAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA------GFRVDHSE 303 (364)
T ss_pred -eeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc------CCcccCCC
Confidence 9999999999988876544444556777888777766643111 234455556666666666553 13333455
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
|.++.| +.... +..++++.|.++||.+.|+. .+++||+.. .+++++++++++|+
T Consensus 304 ~~~~~~-~~~~~---~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~~~~~~l~ 363 (364)
T PRK07865 304 AGLYLW-ATRGE---DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--ATDERIAAAVERLA 363 (364)
T ss_pred ccEEEE-EeCCC---CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CCHHHHHHHHHHhh
Confidence 655555 22222 45678899999999998752 578999954 57899999999885
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=227.20 Aligned_cols=317 Identities=16% Similarity=0.090 Sum_probs=212.7
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~ 147 (470)
++..++|+.++.. ....+|.+.+++.+......+....+..++++++++++.+.++ .++|++|+|+++++..
T Consensus 19 ~~~~~i~l~~~~p---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~ 95 (357)
T TIGR03539 19 HPDGIVDLSVGTP---VDPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAW 95 (357)
T ss_pred CCCCeEEccCCCC---CCCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHH
Confidence 3456789988743 3335788888887766543333222344667788888876543 3689999999999998
Q ss_pred HHHHH-HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLA-RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~-~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.++ .. +|+ .|++.+++|.+........+. ..+.+++++.++ . .+++
T Consensus 96 ~~~~l~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~---------------~~~~v~~~~~l~----~--~~~~ 144 (357)
T TIGR03539 96 LPTLLGLG---------PGD-TVVIPELAYPTYEVGALLAGA---------------TPVAADDPTELD----P--VGPD 144 (357)
T ss_pred HHHHHcCC---------CCC-EEEECCCCcHHHHHHHHhcCC---------------EEeccCChhhcC----c--cCcc
Confidence 87765 33 455 788889998765443322211 122223444332 1 2678
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-ccc--CC----CCcceeecccccc-CC
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDW--EE----VRPDMVILGKALG-GG 298 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~--~~----~~pdi~s~sK~l~-gG 298 (470)
+|+++.++||+|.++ +.+.+++|.++|++||+++|+||+|.+|.+.+.... ... .+ ...-+.||||.++ +|
T Consensus 145 ~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G 223 (357)
T TIGR03539 145 LIWLNSPGNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAG 223 (357)
T ss_pred EEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCc
Confidence 888766699999999 899999999999999999999999987765443221 110 00 0112339999985 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
+ |+||+++++++++.+........++.+.+.+.++.++|+... ....++.++++.+++.+.|++.+ +....+
T Consensus 224 ~-R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g------~~~~~p 296 (357)
T TIGR03539 224 Y-RAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAG------FRIDHS 296 (357)
T ss_pred e-eEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCcCC
Confidence 8 999999999998887654444456677888877777664211 12344555566666666665531 223345
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHH
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.|.++.|... .. +..++.+.|.++||.+.|+. .+++|+++ ..+++++++++++|
T Consensus 297 ~~~~~~~~~~-~~---~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~--~~~~~~i~~~~~~l 356 (357)
T TIGR03539 297 EAGLYLWATR-GE---DAWDTVDRLAELGILVAPGDFYGPAGSQHVRVAL--TATDERIAAAVARL 356 (357)
T ss_pred CccEEEEEEC-CC---CHHHHHHHHHhCCEEECCccccCCCCCCeEEEEe--cCCHHHHHHHHHhh
Confidence 6666666322 22 46678899999999998863 57999995 45789999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=228.00 Aligned_cols=333 Identities=15% Similarity=0.154 Sum_probs=218.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc--CCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS--SRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVET 147 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~ 147 (470)
..++|+..+.+. ...++.+.+++.+.++..... ......++++++++++.+.+| .+ +|++|+|+++|+..
T Consensus 28 ~~~i~l~~~~p~---~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQPD---FPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCCCC---CCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 456788877533 225678899999888753211 122234456666666654433 34 79999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++.+.. +|+ .|++..++|.+........+....+ .+...+...+ |++++++.+.+ ++++
T Consensus 105 ~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~~---~~~~l~~~~~~---~~~~ 164 (387)
T PRK07683 105 AFRTILE---------PGT-EVILPAPIYPGYEPIIRLCGAKPVF----IDTRSTGFRL---TAEALENAITE---KTRC 164 (387)
T ss_pred HHHHhCC---------CCC-EEEEcCCCccchHHHHHHcCCEEEE----eecCcccCCC---CHHHHHHhcCc---CceE
Confidence 9887654 455 7888899987654443332221111 1111111111 67888888865 6677
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC-CCC---cceeecccccc-CCCcce
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVR---PDMVILGKALG-GGVIPV 302 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~-~~~---pdi~s~sK~l~-gG~~~i 302 (470)
+++..++||||.++ +.+.+++|.++|+++|++||+||+|..+...+.......+ +.. .-+.+|||.++ +|+ |+
T Consensus 165 i~i~~p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGl-Ri 242 (387)
T PRK07683 165 VVLPYPSNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGW-RI 242 (387)
T ss_pred EEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccc-ee
Confidence 77555599999999 9999999999999999999999999976443332211111 111 12349999999 998 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
||+++++++++.+.........+.+.+++.++.+.|+.-.. +.++++++++.+.+.+.|.++ .+....+.|.
T Consensus 243 G~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~ 316 (387)
T PRK07683 243 GFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM------GLDVEKPTGA 316 (387)
T ss_pred EEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc------CCcccCCCee
Confidence 99999999988876432222234566777777666643111 234555566666676666553 1333356666
Q ss_pred eEEEE-eccCCCchhHHHHHHHH-HHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 381 FNAVE-FDKTALPVSAYDICLKM-KERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 381 ~~~~~-~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+++|. +.... .+..+++..+ .++||.+.|+. ++++||+. ..+++++.+++++|.++++
T Consensus 317 ~~~~~~~~~~~--~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~--~~~~~~~~~al~~l~~~l~ 382 (387)
T PRK07683 317 FYLFPSIGHFT--MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSY--AYSIETLKEGLDRLEAFLQ 382 (387)
T ss_pred EEEEEecccCC--CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 66663 22211 2456677664 66799998863 57999995 4689999999999999887
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=227.95 Aligned_cols=331 Identities=14% Similarity=0.077 Sum_probs=215.5
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCCCcHHHHHHHHhhhhC------C-CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFG------Y-DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~------~-~~v~~~~sGte 143 (470)
..|+.++||..|.... ..++.+.+++.+.+.....++ .....++++.+++++.+.++ . ++|++|+|+++
T Consensus 25 ~~~~~~i~l~~~~p~~---~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~ 101 (393)
T TIGR03538 25 PASKPPIALSIGEPKH---PTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTRE 101 (393)
T ss_pred hcCCCeEEecCCCCCC---CCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHH
Confidence 4577888998875432 267889999988765432222 12234566777777766532 3 36999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCc-EEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhc
Q 012138 144 GVETALKLARKWGYVKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKES 221 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~ 221 (470)
|+..+++++.. +|+. .|++..|+|.+....+...+.. .. ..+..++ .+.+ |++++++++.+
T Consensus 102 al~~~~~~l~~---------~gd~~~vlv~~P~y~~~~~~~~~~g~~-~~---~v~~~~~~~~~~---d~~~l~~~~~~- 164 (393)
T TIGR03538 102 ALFAFAQAVIN---------PGQAPLVVMPNPFYQIYEGAALLAGAE-PY---FLNCTAENGFLP---DFDAVPESVWR- 164 (393)
T ss_pred HHHHHHHHHcC---------CCCcceEEecCCCCcchHHHHHhcCCe-EE---EeeccccCCCCC---CHHHHHHHHhh-
Confidence 99999998765 5664 5888889986654332222211 11 0111111 1112 78899888865
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--Cccc----cccCCC--Cc---ceee
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLA----SDWEEV--RP---DMVI 290 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~----~~~~~~--~p---di~s 290 (470)
++++|++..++||||.++ +.+.+++|.++|++||++||+||+|..+.+.+ .... ....+. .+ -+.|
T Consensus 165 --~~k~i~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 241 (393)
T TIGR03538 165 --RCQLLFVCSPGNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS 241 (393)
T ss_pred --cceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence 677777544599999999 99999999999999999999999999765443 1111 111111 11 2349
Q ss_pred cccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 291 LGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
|||.++ +|+ |+||+++++++++.+.......+++.+.+.+.++.+++..-+ -...++.++++.+.+.+.|++.
T Consensus 242 ~SK~~~~~Gl-RvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~---- 316 (393)
T TIGR03538 242 LSKRSNLPGL-RSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV---- 316 (393)
T ss_pred chhhcCCccc-ceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 999865 898 999999999998877644333345567777777766663210 0223444555555555555542
Q ss_pred CCceEEEec-cceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------------CCEEEEecCCCCCHHHHHHHH
Q 012138 369 PNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------------DTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 369 p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------------~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+....+ .|.|+++.+. . +..++++.|. ++||.+.|+. .+++||+ +..+++++++++
T Consensus 317 ---~~~~~p~gg~f~~~~~~--~---~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris--~~~~~~~l~~~l 386 (393)
T TIGR03538 317 ---LDLELPDAGFYLWPKVP--G---DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIA--LVAPLEECVEAA 386 (393)
T ss_pred ---CcccCCCeeEEEEEECC--C---CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEE--ecCCHHHHHHHH
Confidence 111234 4555555543 2 4567888886 5699997653 3689999 456899999999
Q ss_pred HHHHHH
Q 012138 435 KALHDV 440 (470)
Q Consensus 435 ~~l~~~ 440 (470)
++|.++
T Consensus 387 ~~l~~~ 392 (393)
T TIGR03538 387 ERIRSF 392 (393)
T ss_pred HHHHHh
Confidence 999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=230.98 Aligned_cols=339 Identities=13% Similarity=0.098 Sum_probs=222.3
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
|..++|+..+.+..+ .+|.+.+++.+.++.... .......++++++++++.+.+| .++|++|+|+++|+..
T Consensus 32 ~~~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 108 (402)
T PRK06107 32 GRSIVDLTVGEPDFD---TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL 108 (402)
T ss_pred cCCEEEcCCCCCCCC---CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 445678887754332 578899999988864321 1222334667788888877654 3579999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++..+.. +|+ .|++.+++|.+.........+.. .. .+... +...+ |++++++++.. +++
T Consensus 109 ~~~~~~~---------~gd-~vl~~~p~y~~y~~~~~~~~~~~-~~---v~~~~~~~~~~---~~~~l~~~~~~---~~~ 168 (402)
T PRK06107 109 ALMATLE---------AGD-EVIIPAPYWVSYPDMVLANDGTP-VI---VACPEEQGFKL---TPEALEAAITP---RTR 168 (402)
T ss_pred HHHHhcC---------CCC-EEEEecCCCcCHHHHHHHcCCEE-EE---ecCCcccCCCC---CHHHHHhhcCc---Cce
Confidence 9876543 455 78888888765533222222111 10 11110 11112 68899988864 667
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhc-CcEEEEeccccCCcccCCcc-cccc--CCCCcc---eeecccccc-CC
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY-NILMIADEIQSGLARSGRML-ASDW--EEVRPD---MVILGKALG-GG 298 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~-gillI~Dev~~g~g~~G~~~-~~~~--~~~~pd---i~s~sK~l~-gG 298 (470)
++++..++||||.++ +.+.+++|+++|++| |+++|+||+|..+.+.+..+ .+.. .+.... +.+|||.++ +|
T Consensus 169 ~v~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG 247 (402)
T PRK06107 169 WLILNAPSNPTGAVY-SRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG 247 (402)
T ss_pred EEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc
Confidence 666544499999999 999999999999998 99999999999765444221 1111 111112 348899998 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+||+++++++++.+........++.+.++++++...|+.-.. +...+.++++.+.+.+.|+++ + .+....
T Consensus 248 l-RiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~-g~~~~~ 321 (402)
T PRK06107 248 W-RIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI----P-GLSCLV 321 (402)
T ss_pred c-ceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC----C-CCcccC
Confidence 8 9999999999999887655545667788888888777742111 223444555555555555442 2 344445
Q ss_pred ccceeEEE-Eecc------CCC--chhHHHHHHHH-HHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 377 GRGLFNAV-EFDK------TAL--PVSAYDICLKM-KERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 377 ~~g~~~~~-~~~~------~~~--~~~~~~~~~~l-~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.|.++.| .+.. +.. ..+..++++.| .++||.+.|+. .+++|++. ..++|++++++++|.+.++
T Consensus 322 p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~--~~~~e~l~~~l~~l~~~l~ 399 (402)
T PRK06107 322 PDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSI--ATSLETLEEACARIERAVA 399 (402)
T ss_pred CCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--CCCHHHHHHHHHHHHHHHH
Confidence 66666655 3321 000 01456677665 46699998873 57999994 4689999999999999998
Q ss_pred ccc
Q 012138 443 LDL 445 (470)
Q Consensus 443 ~~~ 445 (470)
++
T Consensus 400 -~~ 401 (402)
T PRK06107 400 -AL 401 (402)
T ss_pred -hc
Confidence 65
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=229.52 Aligned_cols=318 Identities=17% Similarity=0.126 Sum_probs=212.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~ 153 (470)
.++||.++... +| .+|.+.+++.+.++...+++ .....++.+.++++++ .+++++|+|+++++..+++.+.
T Consensus 30 ~~i~l~~n~~~--~~-~~~~v~~a~~~~~~~~~~~p----~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~ 102 (359)
T PRK03158 30 KIVKLASNENP--YG-PSPKVKEAIAAHLDELALYP----DGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL 102 (359)
T ss_pred ceEEecCCCCC--CC-CCHHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh
Confidence 67899887543 44 58899999998887644332 2335677777777775 4679999999999998887665
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
+ +|+ .|++..|+|++.......... .... .+.. ... .|++++++.+++ ++++++++.+
T Consensus 103 ~---------~gd-~v~~~~p~y~~~~~~~~~~g~-~~~~---~~~~--~~~---~d~~~l~~~~~~---~~~~v~i~~p 160 (359)
T PRK03158 103 N---------PGT-NTVMAEPTFSQYRHNAIIEGA-EVRE---VPLK--DGG---HDLEAMLKAIDE---QTKIVWICNP 160 (359)
T ss_pred C---------CCC-EEEEcCCCHHHHHHHHHHcCC-eEEE---EecC--CCC---cCHHHHHHhcCC---CCCEEEEeCC
Confidence 4 454 788899999775433322221 1110 0110 011 178888887754 6777774445
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cc---cccCCCCcceeecccccc-CCCcceeEEEec
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LA---SDWEEVRPDMVILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~---~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~ 308 (470)
+||||.++ +.+.+.++.+.|+ +|+++|+||+|..|...+.. .. .+..+...-+.||||.++ +|+ |+||++++
T Consensus 161 ~NPtG~~~-~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~~v~~ 237 (359)
T PRK03158 161 NNPTGTYV-NHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAAL-RVGYGIAS 237 (359)
T ss_pred CCCCCCCC-CHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcch-hhehhcCC
Confidence 99999999 6666666666664 69999999999876433311 11 111221112349999998 898 99999999
Q ss_pred HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 309 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++++.+.... .+++.+.+++.++.++|+.-. .+...+..++..+.+.+.|++. .+...++.|.|+++.+.
T Consensus 238 ~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~g~~i~~~~~ 309 (359)
T PRK03158 238 EELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY------GLFYYPSQTNFIFVDTG 309 (359)
T ss_pred HHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC------CCeeCCCcCcEEEEECC
Confidence 99998886533 357789999999888875211 0223333344444444444432 13344567777776553
Q ss_pred cCCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 388 KTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
. +..++++.|.++||.+.|+ .++++||+ ..+.+++++++++|++++
T Consensus 310 --~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~~ 359 (359)
T PRK03158 310 --R---DANELFEALLKKGYIVRSGAALGFPTGVRIT---IGLKEQNDKIIELLKELL 359 (359)
T ss_pred --C---CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe---cCCHHHHHHHHHHHHHhC
Confidence 2 5678999999999999986 36899999 348999999999998763
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=238.01 Aligned_cols=339 Identities=13% Similarity=0.108 Sum_probs=217.5
Q ss_pred CCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGV 145 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~ 145 (470)
..|+.+++|..|... +++ ..++++.+++.+.+.....++. ....++++.+++++.+.. ..++|++|+|+++++
T Consensus 143 ~~g~~~i~l~~G~p~-~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal 221 (517)
T PRK13355 143 AAGTHILKLNIGNPA-PFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELI 221 (517)
T ss_pred HcCCCeEEecCcCCC-cCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHH
Confidence 357789999987442 233 2578899998888764322221 123345566666654432 246899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..+++++.. +|+ .|++..|+|......+...++.... .+..++ .+.+ |+++|+++++. +
T Consensus 222 ~~~~~~l~~---------~Gd-~Vli~~P~y~~y~~~~~~~g~~~v~----~~~~~~~~~~~---d~~~l~~~~~~---~ 281 (517)
T PRK13355 222 NLSMSALLD---------DGD-EVLIPSPDYPLWTACVNLAGGTAVH----YRCDEQSEWYP---DIDDIRSKITS---R 281 (517)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCCcCHHHHHHHCCCEEEE----eecCcccCCCC---CHHHHHHhcCc---C
Confidence 999987754 565 7888899997765544333332111 011111 1122 89999998865 6
Q ss_pred eEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCcce-----eecccccc-
Q 012138 225 IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDM-----VILGKALG- 296 (470)
Q Consensus 225 ~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~pdi-----~s~sK~l~- 296 (470)
+++|+ ++| +||||.++ +.+.+++|+++|++||++||+||+|..|.+.+..+ .... ..++. -+|||.++
T Consensus 282 ~k~i~i~nP-~NPTG~v~-~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~~~vi~~~S~SK~~~~ 357 (517)
T PRK13355 282 TKAIVIINP-NNPTGALY-PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPDLFCVTFSGLSKSHMI 357 (517)
T ss_pred ceEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCCCeEEEEecchhhccC
Confidence 77776 666 99999999 89999999999999999999999999876555321 1111 12332 37899986
Q ss_pred CCCcceeEEEe--cHHH----HhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHH---HHHHHHHHHHHHHHHHHh
Q 012138 297 GGVIPVSAVLA--DKEV----MLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAE---RSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 297 gG~~~ig~v~~--~~~~----~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~---~~~~~~~~l~~~L~~l~~ 366 (470)
+|+ |+||+++ ++++ ++.+... ....++.+.+++.++.++|+.... +.+.+ +..+.++++.+.|++
T Consensus 358 ~G~-RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--- 432 (517)
T PRK13355 358 AGY-RIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNA--- 432 (517)
T ss_pred ccc-ceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 898 9999984 3443 3333211 122345677788888777742110 11111 222334455555544
Q ss_pred hCCCceEEEeccceeEEE-EeccCCC-chhHHHHH-HHHHHcCceeccC------CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 367 QFPNYVKEVRGRGLFNAV-EFDKTAL-PVSAYDIC-LKMKERGILAKPT------HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~~~~-~~~~~~~-~~~~~~~~-~~l~~~Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+| .+....+.|.|+.| .++.... ..+..+++ +.|.++||.+.|+ .++++|++ +..+++++++++++|
T Consensus 433 -~~-g~~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris--~~~~~~~l~~a~~rl 508 (517)
T PRK13355 433 -IP-GISAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVV--YLPRLEDLEDAMDRL 508 (517)
T ss_pred -CC-CcccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEE--eCCCHHHHHHHHHHH
Confidence 32 45566788888877 4432110 01234454 5567779999876 26799999 568999999999999
Q ss_pred HHHHhccc
Q 012138 438 HDVLELDL 445 (470)
Q Consensus 438 ~~~l~~~~ 445 (470)
.+++. ..
T Consensus 509 ~~~~~-~~ 515 (517)
T PRK13355 509 ADFFS-YY 515 (517)
T ss_pred HHHHH-Hh
Confidence 99998 54
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=228.15 Aligned_cols=330 Identities=14% Similarity=0.179 Sum_probs=215.3
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~ 145 (470)
|..++||..+ .+.+..++++.+++.+.+.... +.......++++++++++.+.++ .+ .+++|+|+++|+
T Consensus 34 g~~~i~l~~g---~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al 110 (394)
T PRK05942 34 GLDLIDLGMG---NPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGL 110 (394)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHH
Confidence 4557888877 3334456778888777664321 11111223556677777765544 34 488999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..++..+.. +|+ .|++..|+|.+........+.. .. ..+...+ ...+ |++++++.+.+ +
T Consensus 111 ~~~~~~~~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~-~~---~v~~~~~~~~~~---d~~~l~~~~~~---~ 170 (394)
T PRK05942 111 THLALAYVN---------PGD-VVLVPSPAYPAHFRGPLIAGAQ-IY---PIILKPENDWLI---DLSSIPEEVAQ---Q 170 (394)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHHcCCE-EE---EeecCCccCCcc---CHHHHHHhccc---c
Confidence 999887654 455 7888899987654333222211 10 0111111 1112 78999888865 7
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----ccccc-CCCCcceeecccccc-CC
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDW-EEVRPDMVILGKALG-GG 298 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~-~~~~pdi~s~sK~l~-gG 298 (470)
+++|++..++||||.++ +.+.+++|.++|++||+++|+||+|..|...+.. ..... .+....+.+|||.++ +|
T Consensus 171 ~k~i~l~~P~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G 249 (394)
T PRK05942 171 AKILYFNYPSNPTTATA-PREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG 249 (394)
T ss_pred ceEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChh
Confidence 88888664499999999 9999999999999999999999999976544421 11111 122234569999996 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+||+++++++++.+........++.+.+++.++.++++..++ +..+++++++.+.+.+.|+++ .+....
T Consensus 250 l-RiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~ 322 (394)
T PRK05942 250 W-RVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL------GWNIPP 322 (394)
T ss_pred h-heeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC------CCeecC
Confidence 8 9999999999999887544434556677777777777764322 345566666666677766553 133345
Q ss_pred ccce-eEEEEeccCCCchhHHHHHHHH-HHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 377 GRGL-FNAVEFDKTALPVSAYDICLKM-KERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 377 ~~g~-~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+.|. |+++.+... .+..+++.++ .++||.+.|+. .+++|++++ .+.+.+.+++++|.+
T Consensus 323 ~~~~~f~~~~~~~~---~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~--~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 323 TKATMYLWVPCPVG---MGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI--ADCDRLGEALDRLKQ 388 (394)
T ss_pred CCeeeEEEEECCCC---CCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 5566 455544432 2456677655 46799998752 579999964 456667777776654
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=228.51 Aligned_cols=339 Identities=17% Similarity=0.175 Sum_probs=221.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc--CCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS--SRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
+..++||..+.... ..++++.+++.+.+...... .......++..+++++.+.++ .+++++|+|+++|+..
T Consensus 30 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~ 106 (393)
T PRK05764 30 GRDVISLGAGEPDF---DTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYN 106 (393)
T ss_pred cCCEEEeCCCCCCC---CCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHH
Confidence 34577888886543 26789999988887643211 111123345555555544433 3579999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++..+.+ +|+ .|++..++|.+....+... +..... .+..++ ...+ |+++++++++. +++
T Consensus 107 ~~~~~~~---------~gd-~vl~~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~~~~~---d~~~l~~~l~~---~~~ 166 (393)
T PRK05764 107 AFMALLD---------PGD-EVIIPAPYWVSYPEMVKLA-GGVPVF---VPTGEENGFKL---TVEQLEAAITP---KTK 166 (393)
T ss_pred HHHHhcC---------CCC-EEEecCCCCcchHHHHHHc-CCEEEE---EecCcccCCcC---CHHHHHHhhCc---cce
Confidence 9887654 454 7888888876543332222 211110 011100 1111 68999988864 667
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccc-----ccCCCCcceeecccccc-CCC
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LAS-----DWEEVRPDMVILGKALG-GGV 299 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~-----~~~~~~pdi~s~sK~l~-gG~ 299 (470)
+|++..++||+|.++ +.+.+++|.++|++||+++|+||+|..+...+.. ... +..+....+.+|||.++ +|+
T Consensus 167 ~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~ 245 (393)
T PRK05764 167 ALILNSPSNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGW 245 (393)
T ss_pred EEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccc
Confidence 767555599999999 8899999999999999999999999876544422 111 11111122348999999 898
Q ss_pred cceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
|+||+++++++++.+.......+++.+++++.++...|+...+ +.++++++++.+.+.+.|+++ | .+....+
T Consensus 246 -RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~ 319 (393)
T PRK05764 246 -RLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI----P-GLECPKP 319 (393)
T ss_pred -eeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC----C-CCcccCC
Confidence 9999999999998886544444556788888888777752111 334555555666666666553 2 2333456
Q ss_pred cceeEEE-EeccCCC--chhHHHHHHHHHH-cCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 378 RGLFNAV-EFDKTAL--PVSAYDICLKMKE-RGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 378 ~g~~~~~-~~~~~~~--~~~~~~~~~~l~~-~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.|.++.| .+..... +.++.++.+.|.+ +||.+.++. .+++|++ +..+++++++++++|.++++ +.
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis--~~~~~~~~~~~i~~l~~~~~-~~ 392 (393)
T PRK05764 320 EGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLS--YATSLEDLEEGLERIERFLE-SL 392 (393)
T ss_pred CcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEE--ecCCHHHHHHHHHHHHHHHH-hh
Confidence 6655544 4432110 1135788888765 699998763 4899999 55789999999999999987 54
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=228.79 Aligned_cols=333 Identities=14% Similarity=0.176 Sum_probs=217.1
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc-c-CCCCCCCcHHHHHHHHhhhhCC----C-eEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-S-SRAFYNDKFPVFAERLTSMFGY----D-MVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~l~~~~~~----~-~v~~~~sGteA~~~a 148 (470)
.++||..+..... .++.+.+++.+.+..... + ......++++.+++++.+.++. + +|++|+|+++|+..+
T Consensus 25 ~~i~l~~g~p~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 101 (387)
T PRK07777 25 GAVNLGQGFPDED---GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA 101 (387)
T ss_pred CeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 4688888865433 456778877776654211 1 1112334455666666555553 3 699999999999998
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeeecCCCHHHHHHHHHhcCCCeE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
+..+.. +|+ .|++..++|++.......... .... .+..++ ...+ |+++|++++.+ +++
T Consensus 102 ~~~~~~---------~gd-~vli~~p~y~~~~~~~~~~g~-~~~~---~~~~~~~~~~~~---d~~~l~~~~~~---~~~ 161 (387)
T PRK07777 102 VLGLVE---------PGD-EVLLIEPYYDSYAAVIAMAGA-HRVP---VPLVPDGRGFAL---DLDALRAAVTP---RTR 161 (387)
T ss_pred HHHhcC---------CCC-EEEEeCCCchhhHHHHHHCCC-EEEE---eecCCccCCCcC---CHHHHHHhcCc---ccE
Confidence 876543 455 777888888765433222221 1110 111111 1112 78999988865 678
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC-C---CCcceeecccccc-CCCc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE-E---VRPDMVILGKALG-GGVI 300 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~-~---~~pdi~s~sK~l~-gG~~ 300 (470)
+|++++++||||.++ +.+.+++|.++|++||+++|+||+|.++.+.+.. .....+ + ...-+.||||.++ +|+
T Consensus 162 ~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl- 239 (387)
T PRK07777 162 ALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGW- 239 (387)
T ss_pred EEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCc-
Confidence 888766799999999 8999999999999999999999999977554431 111111 1 1112448999998 898
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
|+||+++++++++.+.......+++.+.+.+.++..++...++ +.+++.++++++.+.+.|++++ +....+.
T Consensus 240 RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~ 313 (387)
T PRK07777 240 KIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEAG------FEVHDSA 313 (387)
T ss_pred eeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCC------CCccCCC
Confidence 9999999999988776544444555555555555555542111 3456667777777777776642 2233455
Q ss_pred ceeEEE-EeccCCCchhHHHHHHHHH-HcCceeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLFNAV-EFDKTALPVSAYDICLKMK-ERGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~-~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~---------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.++.| .++... ..++.++++.|. ++||.+.|+. .+++||+. ..+++++++++++|.++..
T Consensus 314 g~~~~~~~~~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~--~~~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 314 GTYFLCADPRPLG-YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAF--CKRDDTLDEAIRRLRALRG 385 (387)
T ss_pred cceEEEecccccC-CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEe--cCCHHHHHHHHHHHHHHhc
Confidence 666555 443111 125688999997 5699998763 35899995 4589999999999988764
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=226.69 Aligned_cols=337 Identities=13% Similarity=0.169 Sum_probs=223.4
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~ 145 (470)
|..++|+..+ .+.+..++.+.+++.+.+.... +.......++++.+++++.+.+| .+ ++++|+|+++++
T Consensus 28 ~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 4566788776 3444456778888877764321 11112234556667777665443 24 699999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHhc
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKES 221 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~~ 221 (470)
..++..+.. +|+ .|++..|+|..........+.. ...++. .+.+++++++++.
T Consensus 105 ~~~~~~~~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~l~~~l~~~ 161 (395)
T PRK08175 105 AHLMLATLD---------HGD-TVLVPNPSYPIHIYGAVIAGAQ-------------VRSVPLVEGVDFFNELERAIRES 161 (395)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHHcCCe-------------EEEEecccCCCcHHHHHHHHhhc
Confidence 988876654 565 7888899986544433222211 112221 1478898888764
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc-cc---CCCCcceeecccccc
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS-DW---EEVRPDMVILGKALG 296 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~-~~---~~~~pdi~s~sK~l~ 296 (470)
..++++|+++.++||+|.++ +.+.+++|.++|++||++||+||+|..+...+... .+ .. .+...-+.+|||.++
T Consensus 162 ~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 240 (395)
T PRK08175 162 YPKPKMMILGFPSNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYN 240 (395)
T ss_pred cCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeecccccc
Confidence 44678888665599999999 89999999999999999999999999765444321 11 11 111112358999996
Q ss_pred -CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 297 -GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+|+ |+||+++++++++.+........++.+.+.+.++.+.++..+. +.+++.++++.+.+.+.|+.++ +.
T Consensus 241 ~pGl-RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~------~~ 313 (395)
T PRK08175 241 MAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAG------WM 313 (395)
T ss_pred Ccch-hheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHcC------Cc
Confidence 898 9999999999999876543334556666677777666653211 3345556666666777666541 22
Q ss_pred EEec-cceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 374 EVRG-RGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 374 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
...+ .|.|+++.+.......++.+++++|. +.||.+.|+. ++++||+. ..+++.+.+++++|.+++. +.
T Consensus 314 ~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~--~~~~~~~~~al~~l~~~l~-~~ 390 (395)
T PRK08175 314 VEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL--IENRDRIRQAIRGIKAMFR-AD 390 (395)
T ss_pred ccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe--CCCHHHHHHHHHHHHHHHH-hc
Confidence 2333 56666666654210124678888776 5699998862 46899995 4689999999999999998 65
Q ss_pred CC
Q 012138 446 PK 447 (470)
Q Consensus 446 ~~ 447 (470)
-.
T Consensus 391 ~~ 392 (395)
T PRK08175 391 GL 392 (395)
T ss_pred CC
Confidence 44
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=228.76 Aligned_cols=340 Identities=14% Similarity=0.072 Sum_probs=218.1
Q ss_pred CCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccc-c-CCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHH
Q 012138 73 EGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTL-S-SRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGV 145 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~ 145 (470)
+|+.++|+..|.+.. .++ .++.+.+++.+.+..... + +.....++++.+++++...+| .++|++|+|+++|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 106 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL 106 (398)
T ss_pred cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 367889999887642 333 678899999888764321 1 112233445555555544333 45799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..++.++.. +|+ .|++..++|.+........+..... +.+...+...+ |+++|++++++ ++
T Consensus 107 ~~~~~~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~~v~---~~~~~~~~~~~---d~~~l~~~~~~---~~ 167 (398)
T PRK08363 107 QLIFGALLD---------PGD-EILIPGPSYPPYTGLVKFYGGVPVE---YRTIEEEGWQP---DIDDIRKKITE---KT 167 (398)
T ss_pred HHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHHcCCEEEE---eccccccCCcC---CHHHHHhhCCc---ce
Confidence 999987754 455 7888888987654433322221111 00111111112 78888888865 67
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc---eeecccccc-CCCcc
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD---MVILGKALG-GGVIP 301 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd---i~s~sK~l~-gG~~~ 301 (470)
+++++..++||+|.++ +.+.+++|.++|++||++||+||+|..+...+.........-... +.||||.++ +|+ |
T Consensus 168 ~~v~l~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl-R 245 (398)
T PRK08363 168 KAIAVINPNNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGW-R 245 (398)
T ss_pred EEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccc-e
Confidence 7777545599999999 899999999999999999999999997654443221111111112 349999954 898 9
Q ss_pred eeEEEe--cHHHHhhcCcCC---ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 302 VSAVLA--DKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 302 ig~v~~--~~~~~~~~~~~~---~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+||+++ ++++++.+.... ....++.+.+++.++.++|....+ .+++++++++.+.+.+.|+++ | .+..
T Consensus 246 iG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~-~~~~ 320 (398)
T PRK08363 246 LGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEI----P-GIST 320 (398)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcC----C-CCEe
Confidence 999997 666555443211 112356777888877777753111 334555666666666666542 2 3444
Q ss_pred EeccceeEEE-EeccCCCchhHHHHH-HHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 375 VRGRGLFNAV-EFDKTALPVSAYDIC-LKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 375 ~~~~g~~~~~-~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
..+.|.|+.| .++... ..+..+++ +.|.++||.+.|+. ++++|++. ..+++++++++++|.++++
T Consensus 321 ~~p~g~~~~~~~l~~~~-~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~~~ 393 (398)
T PRK08363 321 TKPQGAFYIFPRIEEGP-WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVF--LPPVEILEEAMDRFEEFMR 393 (398)
T ss_pred cCCCeEEEEEEEeccCC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 4567777776 444310 01344554 55678899998763 47999994 5789999999999999987
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=228.27 Aligned_cols=334 Identities=16% Similarity=0.176 Sum_probs=219.2
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc-c-CCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-S-SRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~a 148 (470)
..+||..|.+..+ .++.+.+++.+.+..... + +.....++++.+++++.+.+| .+ +|++|+|+++|+..+
T Consensus 27 ~~i~l~~g~p~~~---~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 103 (387)
T PRK08912 27 GAINLGQGFPDDP---GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA 103 (387)
T ss_pred CeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH
Confidence 4688888865432 468888888777653211 1 111233456666766665544 34 899999999999888
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
+..... +|+ .|++..++|..........+.. ... .+..++...+ |+++|++.+.. +++++
T Consensus 104 ~~~~~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~-~~~---~~~~~~~~~~---~~~~l~~~~~~---~~~~v 163 (387)
T PRK08912 104 LLALVE---------PGD-EVVLFQPLYDAYLPLIRRAGGV-PRL---VRLEPPHWRL---PRAALAAAFSP---RTKAV 163 (387)
T ss_pred HHHhcC---------CCC-EEEEeCCCchhhHHHHHHcCCE-EEE---EecCcccCcC---CHHHHHHHhCc---cceEE
Confidence 886654 455 7888899986554433222211 110 1111111122 78999988865 66777
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c-cccCCC---Ccceeecccccc-CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A-SDWEEV---RPDMVILGKALG-GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~-~~~~~~---~pdi~s~sK~l~-gG~~~i 302 (470)
++..++||||.++ +.+.+++|.++|++||+++|+||+|..+...+..+ . .+..+. ..-+.||||.++ +|+ |+
T Consensus 164 ~l~~p~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-Ri 241 (387)
T PRK08912 164 LLNNPLNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGW-KV 241 (387)
T ss_pred EEeCCCCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCc-ee
Confidence 7555599999999 89999999999999999999999998765444211 1 111121 112348999999 998 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
||+++++++++.+........++.++..+.++.+++....+ ++++++++++.+.+.+.|+..+ +....+.|.
T Consensus 242 G~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~g~ 315 (387)
T PRK08912 242 GFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRIG------FPVLPSQGT 315 (387)
T ss_pred EEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCC------CcccCCCcc
Confidence 99999999998876544444566666666666666642111 3455666677777777766541 333345565
Q ss_pred eEEE-EeccCCCchhHHHHHHHHH-HcCceeccCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 381 FNAV-EFDKTALPVSAYDICLKMK-ERGILAKPTH--------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 381 ~~~~-~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~--------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.| .+.......+..++++.|. ++||.+.|+. .+++|++. ..+++++++++++|.++++
T Consensus 316 ~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~--~~~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 316 YFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCF--AKRDATLDEAVERLAAARR 385 (387)
T ss_pred eEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEE--eCCHHHHHHHHHHHHHHHh
Confidence 5554 4432110125778999886 4699988752 47999995 4578999999999999886
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=227.89 Aligned_cols=343 Identities=15% Similarity=0.134 Sum_probs=214.7
Q ss_pred CCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccc---cCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTL---SSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~ 145 (470)
|+.+|++..|-+.. +....++++.+++.+.++.... .......++++.+++++....+ .++|++|+|+++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 77899998874321 1233578899999988875322 1112233455566666654332 36799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..+++.+.. +|+ .|++..|+|................ .++.+ +.+.+ |+++|++++++ +
T Consensus 131 ~l~~~~l~~---------~Gd-~Vlv~~P~y~~y~~~~~~~g~~~~~----~~~~~~~~~~~---d~~~l~~~~~~---~ 190 (430)
T PLN00145 131 EIIMSVLAQ---------PGA-NILLPRPGYPLYEARAVFSGLEVRH----FDLLPERGWEV---DLEGVEALADE---N 190 (430)
T ss_pred HHHHHHhcC---------CCC-EEEEcCCCCccHHHHHHHcCCEEEE----eeCCcccCCcC---CHHHHHHHhCc---C
Confidence 999987754 455 7888899987654333222221111 11111 11222 89999988876 5
Q ss_pred eEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCC---Ccceeecccccc-CC
Q 012138 225 IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEV---RPDMVILGKALG-GG 298 (470)
Q Consensus 225 ~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~---~pdi~s~sK~l~-gG 298 (470)
+++++ ++| +||||.++ +.+.+++|.++|++||++||+||+|..|.+.+..+ ....++- ..-+-+|||.++ +|
T Consensus 191 ~~~i~i~~P-~NPtG~v~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG 268 (430)
T PLN00145 191 TVAMVIINP-NNPCGSVY-SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG 268 (430)
T ss_pred ceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC
Confidence 66666 555 99999999 99999999999999999999999999875544321 1111111 112348999955 89
Q ss_pred CcceeEEEe--cHHHHh------hcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 299 VIPVSAVLA--DKEVML------CIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 299 ~~~ig~v~~--~~~~~~------~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
+ |+||+++ ++.+++ .+.... ....+.+.+.++++..+|+.-.+ ++.++.++++++.+.+.|+++
T Consensus 269 ~-RlG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--- 343 (430)
T PLN00145 269 W-RLGWIATCDPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEI--- 343 (430)
T ss_pred e-eEEEEEEecchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 9 9999996 333322 222211 11223567777777777753111 223444455555555555442
Q ss_pred CCCceEE-EeccceeEEE-EeccCCC-c-hhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 368 FPNYVKE-VRGRGLFNAV-EFDKTAL-P-VSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 368 ~p~~~~~-~~~~g~~~~~-~~~~~~~-~-~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
| .+.. ..+.|.++.| .++.... . .+..+++.+|. ++||++.|+. .+++||++ ..+++++++++++|.
T Consensus 344 -~-g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~--~~~~~~l~~al~rl~ 419 (430)
T PLN00145 344 -K-CITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITF--AIDPPSLEDGLERLK 419 (430)
T ss_pred -C-CCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--CCCHHHHHHHHHHHH
Confidence 2 3332 3466665555 3332100 0 13556776655 5599998863 68999995 468999999999999
Q ss_pred HHHhcccCCC
Q 012138 439 DVLELDLPKM 448 (470)
Q Consensus 439 ~~l~~~~~~~ 448 (470)
+++. +.++.
T Consensus 420 ~~~~-~~~~~ 428 (430)
T PLN00145 420 SFCL-RHAKL 428 (430)
T ss_pred HHHH-Hhccc
Confidence 9998 76543
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=226.83 Aligned_cols=334 Identities=13% Similarity=0.178 Sum_probs=220.7
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccc---cCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL---SSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~a 148 (470)
++|+..|..... .++.+.+++.+.+..... .......+++..+++++++.+| .+.+++|+|+++++..+
T Consensus 29 ~~~l~~g~~~~~---~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~ 105 (389)
T PRK05957 29 TISLGQGVVSYP---PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA 105 (389)
T ss_pred eEEccCCCCCCC---CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH
Confidence 567777754422 678899999887754321 1112234567788888887765 34699999999999888
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
+..+.. +|+ .|++.+|+|..........+... . +.+.. +...+ |+++|++.+++ ++++|
T Consensus 106 ~~~~~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~~~-~---~v~~~-~~~~~---d~~~l~~~i~~---~~klv 164 (389)
T PRK05957 106 ILAITD---------PGD-EIILNTPYYFNHEMAITMAGCQP-I---LVPTD-DNYQL---QPEAIEQAITP---KTRAI 164 (389)
T ss_pred HHHhcC---------CCC-EEEEeCCCCcCHHHHHHhcCCEE-E---EeecC-CCCCc---CHHHHHHhcCc---CceEE
Confidence 876643 455 77778888754433222211111 0 11111 01122 78999998865 67887
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccc-ccCCC---Ccceeecccccc-CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LAS-DWEEV---RPDMVILGKALG-GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~-~~~~~---~pdi~s~sK~l~-gG~~~i 302 (470)
++..++||||.++ +.+.+++|.++|++||++||+||+|.+|.+.+.. ... ...+. ...+.+|||.++ +|+ |+
T Consensus 165 ~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-Ri 242 (389)
T PRK05957 165 VTISPNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASW-RI 242 (389)
T ss_pred EEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccc-ee
Confidence 7555699999999 8999999999999999999999999977554321 111 11111 123458999997 898 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
||+++++++++.+.........+.+.+++.++..+|+.-. -++..++++++++.+.+.|+++ +..+....+.|.
T Consensus 243 G~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~~~gg 318 (389)
T PRK05957 243 GYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQL----QDRCTLHPANGA 318 (389)
T ss_pred EEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhc----CCCccccCCCee
Confidence 9999999999988754433344556677777766664211 0223445556666666666543 211232345544
Q ss_pred e-EEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 381 F-NAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 381 ~-~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ +++.+... .++.+++++|. ++||.+.|+. ++++|++... .+++++++++++|.+.++ ++
T Consensus 319 ~~~~~~~~~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~l~~~~~~l~~~~~-~~ 386 (389)
T PRK05957 319 FYCFLKVNTD---LNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQKATAKEGIERLVQGLK-TI 386 (389)
T ss_pred EEEEEeCCCC---CChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHH-hh
Confidence 4 44544332 36788999987 4799999863 4689999543 578999999999999988 54
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=222.19 Aligned_cols=299 Identities=12% Similarity=0.031 Sum_probs=209.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~i 169 (470)
.||++.++..+.++.++ .+.+++.++++++++++|. +.+++++||++||..++..+.. +|+.++
T Consensus 34 ~~~~~~~~~~~~~~~~~-----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~---------~gd~Vl 99 (346)
T TIGR03576 34 GGFKIDEEDLELLETYV-----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP---------PGRKVV 99 (346)
T ss_pred CChhHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC---------CCCEEE
Confidence 78999999999998874 3457889999999999987 8999999999999999987764 566444
Q ss_pred EE-E-ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 170 VS-C-CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 170 i~-~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+. . .++ |.+......+.+.. .+.++++++++. . .++++|++++ .+++|.++ +.+.+
T Consensus 100 i~~~d~p~-~~s~~~~~~l~ga~--------------~~~~~~l~~l~~-~----~~~~lIiitg-~s~~G~v~-~~~~L 157 (346)
T TIGR03576 100 HYLPEKPA-HPSIPRSCKLAGAE--------------YFESDELSELKK-I----DGTSLVVITG-STMDLKVV-SEEDL 157 (346)
T ss_pred ECCCCCCC-chhHHHHHHHcCCE--------------EeccCCHHHHhh-C----cCceEEEEEC-CCCCCccc-CHHHH
Confidence 32 2 344 55554444444321 223346666432 1 2577888888 78999998 78889
Q ss_pred HHHHHHHHhcCcEEEEeccccCC--cccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG 325 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~--g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~ 325 (470)
++|.++|++||++||+||+|..+ +..|... ...++...-+.||||+++ |+ ++|++++++++++.+........++
T Consensus 158 ~~i~~la~~~~~~livDEAy~~~~~~~~~~~~-~~~~~~divv~s~SKala-G~-r~G~v~~~~~li~~l~~~~~~~~~s 234 (346)
T TIGR03576 158 KRVIKQAKSKEAIVLVDDASGARVRRLYGQPP-ALDLGADLVVTSTDKLMD-GP-RGGLLAGRKELVDKIKSVGEQFGLE 234 (346)
T ss_pred HHHHHHHHHcCCEEEEECCccccccccCCCCC-HHHcCCcEEEeccchhcc-cc-ceEEEEeCHHHHHHHHHhhcCcccC
Confidence 99999999999999999999832 2123221 122332222348899764 45 8999999999999988665555666
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (470)
.+++.++++.++|+.+..+.+++.++++.+.+.+.+.++ . +. +..+.|+++.+.... +...+.+.|.++
T Consensus 235 ~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~----~--~~--~~~~~f~~~~~~~~~---~~~~~~~ll~~~ 303 (346)
T TIGR03576 235 AQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL----N--VE--RTPTGFVIKGVEEEK---LIEIGLDLLRNY 303 (346)
T ss_pred ccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC----C--CC--cCCCeEEEEeCCCCC---HHHHHHHHHHhC
Confidence 788899999999987554556677777777776666542 1 11 223446666553211 234455566677
Q ss_pred CceeccCC-----CCEEEEecCCCCCHH---HHHHHHHHHHHHHh
Q 012138 406 GILAKPTH-----DTIVRLTPPLSISSN---ELQEGSKALHDVLE 442 (470)
Q Consensus 406 Gv~~~~~~-----~~~iR~~~~~~~t~e---~i~~~~~~l~~~l~ 442 (470)
||++.|+. ++++||+ +..+++ +++.++++|++.++
T Consensus 304 gV~v~~~~~f~~~~~~vRis--~~~~~~~~~~~~~~~~al~~~~~ 346 (346)
T TIGR03576 304 GIITITAVGMPGASKTLRFD--LAAKDAERIGDDYLVEAVKDSLK 346 (346)
T ss_pred CEEEeCCcccCCCCCeEEEE--EecChHHhcCHHHHHHHHHhccC
Confidence 99998853 6799999 445554 79999999988763
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=226.48 Aligned_cols=324 Identities=19% Similarity=0.207 Sum_probs=218.8
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~ 150 (470)
++++++||.++... +| .+|.+.+++.+.+..... |......++++.++++++. ++|++|+|+++++..++.
T Consensus 30 ~~~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 30 GIADIIKLASNENP--LG-PSPKAIEAIRAAADELHR----YPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLAR 102 (367)
T ss_pred CCCceEEecCCCCC--CC-CCHHHHHHHHHHHHhhcC----CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 56789999988533 44 578899999888765432 2222346788888888764 579999999999888777
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
.+.+ +|+ .|++..++|..........+. .... .+. +...+ |++++++.+++ ++++|++
T Consensus 103 ~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~-~~~~---~~~--~~~~~---~~~~l~~~~~~---~~~~v~l 160 (367)
T PRK02731 103 AYLG---------PGD-EVIYSEHGFAVYPIAAQAVGA-KPVE---VPA--KDYGH---DLDAMLAAVTP---RTRLVFI 160 (367)
T ss_pred HhcC---------CCC-EEEEecCCHHHHHHHHHHcCC-eEEE---ecc--cCCCC---CHHHHHHHhCC---CCcEEEE
Confidence 6643 454 788888888654433222211 1110 010 01112 78999988864 6777776
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccccccCCCCccee---ecccccc-CCCcceeEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMV---ILGKALG-GGVIPVSAV 305 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~~~~~~~~pdi~---s~sK~l~-gG~~~ig~v 305 (470)
+.++||+|.++ +.+.+.++.+.|+ +|+++|+||+|..+.+.+. .......+..++++ ||||.++ +|+ |+||+
T Consensus 161 ~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l 237 (367)
T PRK02731 161 ANPNNPTGTYL-PAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGL-RVGYG 237 (367)
T ss_pred eCCCCCCCcCC-CHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCccc-ceeee
Confidence 66699999999 6666666666654 5999999999987654332 11122222223443 8999997 898 99999
Q ss_pred EecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 306 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 306 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
++++++++.+.... .++..+.+++.++.+.++.... +...++.+++.+.+.+.|++.+ +....+.|.++++
T Consensus 238 ~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~g~~~~i 309 (367)
T PRK02731 238 IAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELG------LEYIPSVGNFILV 309 (367)
T ss_pred eCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC------CccCCCCceEEEE
Confidence 99999998876432 3466778888888777652111 3344455555566666665531 2223456888888
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++... ++.++++.|.++||.+.++. ++++|+++ .+.++++.++++|+++++
T Consensus 310 ~~~~~~---~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~---~~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 310 DFDDGK---DAAEAYQALLKRGVIVRPVAGYGLPNALRITI---GTEEENRRFLAALKEFLA 365 (367)
T ss_pred ECCCCC---CHHHHHHHHHHCCEEEEeCCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHh
Confidence 764332 67889999999999998763 47899994 478999999999999876
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=224.36 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=216.3
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
|...+||..+..... .++.+.+++.+.+.... +.......++++.+++++.+..| .++|++|+|+++|+.
T Consensus 28 ~~~~i~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~ 104 (386)
T PRK07550 28 DGPLIDLSQAVPGYP---PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFW 104 (386)
T ss_pred CCCeEEeCCCCCCCC---CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 555788888865432 46788888887764311 11111234456667777765544 478999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++++.. +|+ .|++..++|.+........+.. .. +.+..+ +...+ |++++++++++ ++
T Consensus 105 ~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~-~~---~v~~~~~~~~~~---~~~~l~~~~~~---~~ 164 (386)
T PRK07550 105 AAMVTLAG---------AGD-EVILPLPWYFNHKMWLDMLGIR-PV---YLPCDEGPGLLP---DPAAAEALITP---RT 164 (386)
T ss_pred HHHHHhcC---------CCC-EEEEcCCCCcchHHHHHhcCCE-EE---EEecCCCcCCCC---CHHHHHHHhcc---cC
Confidence 99887754 465 6888889986553322211111 10 011111 01111 78899998876 56
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-cc-ccccCCC---Ccceeecccccc-CCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-ML-ASDWEEV---RPDMVILGKALG-GGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~-~~~~~~~---~pdi~s~sK~l~-gG~ 299 (470)
++|++..++||+|.++ +.+.+++|.++|++||++||+||+|.+|...+. .. .....+. ...+.+|||.++ +|+
T Consensus 165 ~~v~~~~P~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 243 (386)
T PRK07550 165 RAIALVTPNNPTGVVY-PPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGH 243 (386)
T ss_pred cEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCccc
Confidence 6655434499999999 899999999999999999999999997643221 11 1111111 123459999998 898
Q ss_pred cceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
|+||+++++++++.+.......+.+.+.+++.++...++.+++ +..++.++++.+.+.+.|... + .+. +.+
T Consensus 244 -RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~-~~~ 316 (386)
T PRK07550 244 -RVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL----P-GWE-LLA 316 (386)
T ss_pred -ceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC----C-Cce-eCC
Confidence 9999999999888776544444555677777777777654322 234455566666666666553 1 222 234
Q ss_pred cceeE-EEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 378 RGLFN-AVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 378 ~g~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.|.++ ++.+.... .++.+++++|. ++||.+.|+. .+++||++.. .+++++++++++|.++
T Consensus 317 ~g~~~~~~~~~~~~--~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 317 SGAYFAYVRHPFPD--RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred CceEEEEecCCCCC--CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 45444 44443311 36788999875 5699998852 5799999743 5789999999999875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=223.42 Aligned_cols=345 Identities=16% Similarity=0.143 Sum_probs=217.8
Q ss_pred CCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA 144 (470)
.|+.+++|..|.+.. +....++.+.+++.+.+.... +.+.....++++.+++++.+..| .++|++|+|+++|
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 108 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA 108 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence 567888998874431 124467899999988886522 11222233455566666654433 4689999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+..++.++.. +|+ .|++.+++|............... +.+..+ +...+ |++++++++++
T Consensus 109 l~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~~----~i~~~~~~~~~~---d~~~l~~~~~~--- 168 (409)
T PLN02656 109 IDVALSMLAR---------PGA-NILLPRPGFPIYELCAAFRHLEVR----YVDLLPEKGWEV---DLDAVEALADQ--- 168 (409)
T ss_pred HHHHHHHHhC---------CCC-eEEEeCCCCCcHHHHHHHcCCEEE----EEeCCCcCCCCC---CHHHHHHHhcc---
Confidence 9999987754 465 788888888544322222221111 111111 11122 78999988865
Q ss_pred CeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc---ccCCCCcceeecccccc-C
Q 012138 224 QIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS---DWEEVRPDMVILGKALG-G 297 (470)
Q Consensus 224 ~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~---~~~~~~pdi~s~sK~l~-g 297 (470)
++++++ ++| +||||.++ +.+.+++|.++|++||++||+||+|.+|.+.+..+ .. +......-+.+|||.++ +
T Consensus 169 ~~~~v~l~~P-~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p 246 (409)
T PLN02656 169 NTVALVIINP-GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP 246 (409)
T ss_pred CceEEEEECC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCc
Confidence 455555 666 99999999 89999999999999999999999999876555321 11 11111122448999955 8
Q ss_pred CCcceeEEEec--------HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 298 GVIPVSAVLAD--------KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 298 G~~~ig~v~~~--------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
|+ |+||++++ +++++.+..... ...+.+.+++.++.++|+...+ +..++.++++++.+.+.|+++
T Consensus 247 Gl-RiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-- 322 (409)
T PLN02656 247 GW-RLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEI-- 322 (409)
T ss_pred ce-eEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 98 99999983 577777653222 1234677888888777753111 223444555555565555542
Q ss_pred hCCCceEEEecccee-EEEEeccCCC-c-hhHHHH-HHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 367 QFPNYVKEVRGRGLF-NAVEFDKTAL-P-VSAYDI-CLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~-~~~~~~~~~~-~-~~~~~~-~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+......++.|.+ +++.++.... . .+..++ .+.|.++||.+.|+. .+++|+++. .+++++++++++|+
T Consensus 323 --~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~ 398 (409)
T PLN02656 323 --PCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFA--ADPSSLEEALGRIK 398 (409)
T ss_pred --CCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHH
Confidence 2111123455555 4444431100 0 124344 466677899999873 579999954 58999999999999
Q ss_pred HHHhcccCCC
Q 012138 439 DVLELDLPKM 448 (470)
Q Consensus 439 ~~l~~~~~~~ 448 (470)
+++. .....
T Consensus 399 ~~~~-~~~~~ 407 (409)
T PLN02656 399 SFYL-RHSKT 407 (409)
T ss_pred HHHH-Hhccc
Confidence 9998 65543
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=224.42 Aligned_cols=349 Identities=14% Similarity=0.100 Sum_probs=224.4
Q ss_pred CEEEeCCCCeEEeccCCccccc-CCCCCHHHHHHHHHHHHHc--cccC-CCCCCCcHHHHHHHHhhh----------hCC
Q 012138 67 SSIWDPEGNKYLDFLSAYSAVN-QGHCHPKIMKALQEQAEKL--TLSS-RAFYNDKFPVFAERLTSM----------FGY 132 (470)
Q Consensus 67 ~~~~d~~G~~~lD~~~~~~~~~-lG~~~p~v~~a~~~~~~~~--~~~~-~~~~~~~~~~l~~~l~~~----------~~~ 132 (470)
.++.+..|+.++||..|..... .-..++.+.+++.+.++.. ..++ .....++++.+++++.+. ...
T Consensus 25 ~~~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~ 104 (412)
T PTZ00433 25 NAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK 104 (412)
T ss_pred hhccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCCh
Confidence 3455567888999998865421 1225788999988877642 1111 112344566666666543 234
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCH
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDI 211 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~ 211 (470)
++|++|+|+++|+..+++++.. +|+ .|++..|+|................ .+..++ ...+ |+
T Consensus 105 ~~i~it~G~~~al~~~~~~~~~---------~gd-~vlv~~P~y~~~~~~~~~~g~~~~~----i~~~~~~~~~~---d~ 167 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTALCD---------EGD-NILVPAPGFPHYETVCKAYGIEMRF----YNCRPEKDWEA---DL 167 (412)
T ss_pred hhEEEeCChHHHHHHHHHHhcC---------CCC-EEEEccCCcccHHHHHHHcCCEEEE----EecCccccCcC---CH
Confidence 6899999999999999987754 455 7888899987654433322221100 111110 1122 78
Q ss_pred HHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCC-CCc--c
Q 012138 212 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEE-VRP--D 287 (470)
Q Consensus 212 ~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~-~~p--d 287 (470)
++|++++++ ++++|++..++||||.++ +.+.+++|.++|++||++||+||+|.+|.+.+..+ ....+. -.+ -
T Consensus 168 ~~l~~~~~~---~~~~i~~~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~ 243 (412)
T PTZ00433 168 DEIRRLVDD---RTKALIMTNPSNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVI 243 (412)
T ss_pred HHHHHHhcc---CceEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEE
Confidence 999888865 677777544499999999 89999999999999999999999999875544221 111111 111 2
Q ss_pred eeecccccc-CCCcceeEEEe------cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q 012138 288 MVILGKALG-GGVIPVSAVLA------DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEEL 357 (470)
Q Consensus 288 i~s~sK~l~-gG~~~ig~v~~------~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l 357 (470)
+.+|||.++ +|+ |+||+++ .+++++.+.... ...++.+.+++.++.+.+..-.+ ++.++.++++.+.+
T Consensus 244 ~~SfSK~~~~pGl-RlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l 321 (412)
T PTZ00433 244 LGGTAKNLVVPGW-RLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVL 321 (412)
T ss_pred EccchhhcCCCCe-eEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 338999995 898 9999996 245666654322 22356788888887777653111 23444455555555
Q ss_pred HHHHHHHHhhCCCceEEEecc-ceeEEEEeccCCC--chhHHHHHHHHHH-cCceeccCC----CCEEEEecCCCCCHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTAL--PVSAYDICLKMKE-RGILAKPTH----DTIVRLTPPLSISSNE 429 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~l~~-~Gv~~~~~~----~~~iR~~~~~~~t~e~ 429 (470)
.+.|++. + .+....+. |.|+++.++.... ..+..++++.|++ +||.+.|+. .+++|+++ ...+++
T Consensus 322 ~~~L~~~----~-~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~--~~~~e~ 394 (412)
T PTZ00433 322 YNHIGEC----I-GLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTI--SRPVEV 394 (412)
T ss_pred HHHHhcC----C-CCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEe--cCCHHH
Confidence 5555432 1 23334455 4455555543100 0146788999875 699998863 67999995 456899
Q ss_pred HHHHHHHHHHHHhcccC
Q 012138 430 LQEGSKALHDVLELDLP 446 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~~ 446 (470)
+++++++|.++++ ..+
T Consensus 395 l~~al~~l~~~~~-~~~ 410 (412)
T PTZ00433 395 LREAVERIKAFCE-RHK 410 (412)
T ss_pred HHHHHHHHHHHHH-Hhc
Confidence 9999999999998 655
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=228.13 Aligned_cols=347 Identities=14% Similarity=0.142 Sum_probs=218.1
Q ss_pred CCCeEEeccCCccc-ccCCCCCHHHHHHHHHHHHHccc---cCCCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSA-VNQGHCHPKIMKALQEQAEKLTL---SSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~-~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA 144 (470)
+++.+|++..|-.. .+....++++.+++.+.++.... .+.....++++.+++++.+.+ ..++|++|+|+++|
T Consensus 64 ~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~a 143 (462)
T PLN02187 64 VNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQG 143 (462)
T ss_pred CCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHH
Confidence 46788898877322 11133567899999888864321 111112235556666665433 35789999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+..+++.+.. +|+ .|++.+|+|.+........+.. ... .++.+ +.+.+ |+++|++++++
T Consensus 144 l~~~~~~l~~---------pGd-~Vlv~~P~y~~y~~~~~~~g~~-~~~---~~l~~~~~~~~---d~~~l~~~~~~--- 203 (462)
T PLN02187 144 IEIVFESLAR---------PNA-NILLPRPGFPHYDARAAYSGLE-VRK---FDLLPEKEWEI---DLEGIEAIADE--- 203 (462)
T ss_pred HHHHHHHhcC---------CCC-EEEEeCCCCccHHHHHHHcCCE-EEE---EeCccccCCcc---CHHHHHHhcCC---
Confidence 9999997754 565 7888999997754333222221 110 01111 11222 78999988865
Q ss_pred CeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC-CCCc--ceeecccccc-C
Q 012138 224 QIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE-EVRP--DMVILGKALG-G 297 (470)
Q Consensus 224 ~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~-~~~p--di~s~sK~l~-g 297 (470)
++++++ ++| +||||.++ +.+.+++|.++|++||++||+||+|..|.+.+..+ ....+ +..+ -+.+|||.++ +
T Consensus 204 ~~~~v~i~nP-~NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p 281 (462)
T PLN02187 204 NTVAMVVINP-NNPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP 281 (462)
T ss_pred CcEEEEEeCC-CCCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCc
Confidence 455444 777 99999999 99999999999999999999999999865544322 11111 1111 2348999966 8
Q ss_pred CCcceeEEEec-H-HH---HhhcCcCCccCCC--CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 298 GVIPVSAVLAD-K-EV---MLCIQPGEHGSTF--GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 298 G~~~ig~v~~~-~-~~---~~~~~~~~~~~t~--~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
|+ |+||++++ + .+ ++.+........+ +.+.+.++++.++|+.-.+ +..++.++++.+.+.+.|+++
T Consensus 282 Gl-RiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~--- 357 (462)
T PLN02187 282 GW-KIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDI--- 357 (462)
T ss_pred cc-eeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 99 99999973 3 22 2333222222222 3477888888877753111 334455556666666666653
Q ss_pred CCCceE-EEecc-ceeEEEEeccCCC-c-hhHHHHHHH-HHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 368 FPNYVK-EVRGR-GLFNAVEFDKTAL-P-VSAYDICLK-MKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 368 ~p~~~~-~~~~~-g~~~~~~~~~~~~-~-~~~~~~~~~-l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
| ... ...+. |.|+++.++.... + .+..+++.. +.++||.+.|+. .+++||+ +..+++.+++++++|.
T Consensus 358 -~-~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis--~~~~~e~l~~al~rL~ 433 (462)
T PLN02187 358 -P-CVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRIT--IGVEAHMLEDALERLK 433 (462)
T ss_pred -C-CCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEE--eCCCHHHHHHHHHHHH
Confidence 2 222 22344 4666665542100 0 134455554 577799999863 6899999 5567999999999999
Q ss_pred HHHhcccCCCCC
Q 012138 439 DVLELDLPKMRK 450 (470)
Q Consensus 439 ~~l~~~~~~~~~ 450 (470)
++++ ...+...
T Consensus 434 ~~l~-~~~~~~~ 444 (462)
T PLN02187 434 GFCT-RHAKKTE 444 (462)
T ss_pred HHHH-Hhhhccc
Confidence 9998 7665543
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=217.07 Aligned_cols=313 Identities=20% Similarity=0.251 Sum_probs=231.0
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-C--CeEEecCChhHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-Y--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~--~~v~~~~sGteA~~~al~~~ 152 (470)
.++|+.++- +++| .+|++.+++.+.++.+..+ +.+...++.+.++++++ . +.|+.++|.+|.++..++++
T Consensus 23 ~~i~LssNe--nP~g-p~~~~~~~~~~~~~~~~rY----Pd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 23 GIIKLSSNE--NPYG-PPPKVIEAIRAALDKLNRY----PDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred cceeecCCC--CCCC-CCHHHHHHHHHHHHhhccC----CCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence 578998886 3455 5689999998888755543 34456888888888887 3 57999999999999999988
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHhcCCCeEEE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~~~~~~~~v 228 (470)
.. +| +.|++..|+|......+...+... ..++. .|++.+.+.+.+ ++++|
T Consensus 96 ~~---------~g-d~vl~~~Ptf~~Y~~~a~~~g~~~-------------~~v~~~~~~~d~~~~~~~~~~---~~~lv 149 (356)
T COG0079 96 VE---------PG-DTVLIPEPTFSMYEIAAQLAGAEV-------------VKVPLKEFRLDLDAILAAIRD---KTKLV 149 (356)
T ss_pred hc---------CC-CEEEEcCCChHHHHHHHHhcCCeE-------------EEecccccccCHHHHHHhhhc---CCCEE
Confidence 76 55 488899999965554444333221 12221 177888877775 56666
Q ss_pred E-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee---ecccccc-CCCccee
Q 012138 229 L-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVS 303 (470)
Q Consensus 229 i-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~---s~sK~l~-gG~~~ig 303 (470)
+ |+| |||||... +.+.++++.+.+.+ +.+||+||+|..|... .. .....-.++++ ||||++| +|+ |+|
T Consensus 150 ~i~nP-NNPTG~~~-~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~-~~--~~l~~~~~nlivlRTfSKa~gLAGl-RlG 222 (356)
T COG0079 150 FLCNP-NNPTGTLL-PREELRALLEALPE-GGLVVIDEAYIEFSPE-SS--LELLKYPPNLIVLRTFSKAFGLAGL-RVG 222 (356)
T ss_pred EEeCC-CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhcCCc-hh--hhhccCCCCEEEEEecHHhhhcchh-cee
Confidence 6 777 99999999 88889999988888 9999999999998651 11 11111122233 9999999 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
++++++++++.+.. ....|+.|.++++++.++|+.-+. +...+++.+.++++.+.|+.++ .....++.+.|+
T Consensus 223 y~ia~~~~i~~l~~--vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-----~~~v~pS~aNFv 295 (356)
T COG0079 223 YAIANPELIAALNK--VRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-----LFGVFPSQANFV 295 (356)
T ss_pred eccCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeecCCCCcEE
Confidence 99999999999974 456788899999999988864421 3445556666666666666642 122445668888
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+.. . . +..+.+.|.++||+++.+. ++++|++ .-|+||.++++++|.+++.
T Consensus 296 lv~~~~-~--~-~~~l~~~L~~~giivR~~~~~~~~~~~lRit---vgt~een~~ll~AL~~~~~ 353 (356)
T COG0079 296 LVRVPD-A--E-AAALAEALLKKGILVRDCSSVGLLPGYLRIT---VGTPEENDRLLAALREVLK 353 (356)
T ss_pred EEECCC-c--c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEE---eCCHHHHHHHHHHHHHHHh
Confidence 887654 2 2 6689999999999998663 4699999 5688888999999999887
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=224.39 Aligned_cols=334 Identities=15% Similarity=0.153 Sum_probs=216.2
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc--ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT--LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETA 148 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~a 148 (470)
..++||..+.... + .++.+.+++.+.++... +.+.....++++.+++++.+.+| .+++++|+|+++|+..+
T Consensus 33 ~~~i~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 33 ENVISLGIGEPDF--D-TPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred cCeEEcCCCCCCC--C-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 3468888775432 2 46888888888776422 11112233445556665554433 46899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
++.+.. +|+ .|++.+++|.+..... ...+...... +..++ ...+ |++++++.+++ ++++
T Consensus 110 ~~~l~~---------~g~-~Vlv~~p~y~~~~~~~-~~~g~~~~~v---~~~~~~~~~~---d~~~l~~~i~~---~~~~ 169 (391)
T PRK08361 110 FESLLE---------EGD-EVIIPDPAFVCYVEDA-KIAEAKPIRI---PLREENEFQP---DPDELLELITK---RTRM 169 (391)
T ss_pred HHHhcC---------CCC-EEEEcCCCCcccHHHH-HHcCCEEEEE---ecCCccCCCC---CHHHHHHhccc---ccEE
Confidence 887654 455 7888888876543322 2222111110 11111 1112 78999998875 6777
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccccccCCCCcc--eeecccccc-CCCccee
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPD--MVILGKALG-GGVIPVS 303 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~~~~~~~~pd--i~s~sK~l~-gG~~~ig 303 (470)
++++.++||+|.++ +.+.+++|.++|+++++++|+||+|..|...+. ...........+ +.+|||.++ +|+ |+|
T Consensus 170 v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~Gl-RiG 247 (391)
T PRK08361 170 IVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGW-RLG 247 (391)
T ss_pred EEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHh-hhh
Confidence 77555599999999 899999999999999999999999997644332 111111111112 348999998 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g 379 (470)
|+++++++++.+.......+++.+.+.+.++..+|+.-.. +..++.++++.+.+.+.|++ +| .+....+.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~-~~~~~~p~g 322 (391)
T PRK08361 248 FVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE----MP-HIKVFEPKG 322 (391)
T ss_pred hhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh----CC-CCeecCCCE
Confidence 9999999988775433333456677777777666643111 22344445555555555544 22 344555666
Q ss_pred eeEEE-EeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 380 LFNAV-EFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 380 ~~~~~-~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++.| .+.... .+..++++.|.+ +||.+.|+. .+++|++. ..+++++++++++|.++++
T Consensus 323 ~~~~~~~l~~~~--~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~~~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 323 AFYVFANIDETG--MSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISY--ATSKEKLIEAMERMEKALE 389 (391)
T ss_pred EEEEEEECCCCC--CCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 65544 554211 257788888875 699998752 47999994 4688899999999999887
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=222.62 Aligned_cols=344 Identities=16% Similarity=0.140 Sum_probs=213.5
Q ss_pred CCCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGte 143 (470)
.+|+.+|+|..|.... .....+|.+.+++.+.++... +.+.....++++.+++++.+.+| .++|++|+|+++
T Consensus 29 ~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~ 108 (409)
T PLN00143 29 DDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKH 108 (409)
T ss_pred CCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHH
Confidence 4567788888774320 113478889899988887532 21222344567777777765543 467999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~ 222 (470)
++..+++.+.. +|+ .|++..|+|.+.............. .+..+ +.+.+ |+++|+++++.
T Consensus 109 al~~~~~~l~~---------~gd-~v~v~~P~y~~~~~~~~~~g~~~~~----~~~~~~~~~~~---d~~~l~~~~~~-- 169 (409)
T PLN00143 109 AAEIIIKVLAR---------PEA-NILLPRPGFPDVETYAIFHHLEIRH----FDLLPEKGWEV---DLDAVEAIADE-- 169 (409)
T ss_pred HHHHHHHHHcC---------CCC-EEEEcCCCCcCHHHHHHHcCCEEEE----EeccCCCCCcC---CHHHHHHhccc--
Confidence 99999997764 455 8888999997654333322211100 01100 11122 88999988765
Q ss_pred CCeE-EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCC---cceeecccccc-
Q 012138 223 DQIA-GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVR---PDMVILGKALG- 296 (470)
Q Consensus 223 ~~~~-~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~---pdi~s~sK~l~- 296 (470)
+++ +++++| +||||.++ +.+.+++|.++|++||++||+||+|..|.+.+..+ ......-. .-+.||||.++
T Consensus 170 -~~~~~~~~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 170 -NTIAMVIINP-GNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred -CCEEEEEECC-CCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 444 455777 99999999 99999999999999999999999999876555321 11111111 12349999955
Q ss_pred CCCcceeEEEec-H-HH------HhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLAD-K-EV------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 297 gG~~~ig~v~~~-~-~~------~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+|+ |+||++++ + .+ ++.+........+ .+.++++++.++|+.-.+ ++..+.+++..+.+.+.|+++
T Consensus 247 pGl-RvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~- 323 (409)
T PLN00143 247 PGW-GLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEI- 323 (409)
T ss_pred Ccc-ceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 898 99999983 3 33 2222221122223 366777777666642111 223344444444454544432
Q ss_pred hhCCCceE-EEecc-ceeEEEEeccCC-Cc-hhHHHHHHHH-HHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHH
Q 012138 366 QQFPNYVK-EVRGR-GLFNAVEFDKTA-LP-VSAYDICLKM-KERGILAKPTH----DTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 366 ~~~p~~~~-~~~~~-g~~~~~~~~~~~-~~-~~~~~~~~~l-~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
+ ... ...+. |.|+++.+.... .+ .+..+++..+ .++||.+.|+. .+++||++ ..+++++++++++
T Consensus 324 ---~-~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~--~~~~~~l~~al~r 397 (409)
T PLN00143 324 ---P-CIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITF--AVEQSSLEDGLGR 397 (409)
T ss_pred ---C-CCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEE--cCCHHHHHHHHHH
Confidence 2 221 12344 445555543210 00 1355666544 67799999864 68999994 5679999999999
Q ss_pred HHHHHhcccCC
Q 012138 437 LHDVLELDLPK 447 (470)
Q Consensus 437 l~~~l~~~~~~ 447 (470)
|.++++ ...+
T Consensus 398 l~~~l~-~~~~ 407 (409)
T PLN00143 398 LKSFCG-RHAK 407 (409)
T ss_pred HHHHHH-Hhcc
Confidence 999997 5543
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=222.54 Aligned_cols=319 Identities=16% Similarity=0.198 Sum_probs=207.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALK 150 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~ 150 (470)
.+..++||..|... ++ .+|++.+++.+.++.... |...-..+|.+.++++++ .++|++|+|+++++..+++
T Consensus 28 ~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~----Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~ 100 (357)
T PRK14809 28 DPDDLVKLSSNENP--HG-PSPAAVEAIREAAERVHS----YPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLAR 100 (357)
T ss_pred CccceeEecCCCCC--CC-CCHHHHHHHHHHHhhhhc----CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 35578899887433 33 678899998887764322 222234567777777764 5689999999999999988
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
++.. +|+ .|++.+|+|............. ... .++.. +.... +.+++++... ++++|+
T Consensus 101 ~~~~---------~gd-~V~v~~P~y~~~~~~~~~~g~~-~~~---~~l~~~~~~~~---~~~~~~~~~~----~~k~i~ 159 (357)
T PRK14809 101 AMLD---------PGD-TVLVPDPGFAYYGMSARYHHGE-VRE---YPVSKADDFEQ---TADTVLDAYD----GERIVY 159 (357)
T ss_pred HhcC---------CCC-EEEEeCCChHHHHHHHHHcCCe-EEE---EecccCcCCCc---CHHHHHHhhc----CCcEEE
Confidence 7754 465 7888999875332222111111 000 01100 00111 5666655442 456666
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEEe
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLA 307 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~ 307 (470)
+..++||||.++ +.+.+++|.++|++ +++||+||+|..|...+.... .+..+....+.||||.++ +|+ |+||+++
T Consensus 160 l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl-RiG~~~~ 236 (357)
T PRK14809 160 LTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGL-RLGYAVV 236 (357)
T ss_pred EeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcch-hheeeec
Confidence 555599999999 88889999888875 789999999998765433211 121222223459999998 898 9999999
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEe
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~ 386 (470)
++++++.+... ..+++.+.+++.++.++|+.-.. +..++.++++.+.+.+.|.. . ..++.|.|+++.+
T Consensus 237 ~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~-----~~~~~g~f~~~~~ 305 (357)
T PRK14809 237 PEEWADAYARV--NTPFAASELACRAGLAALDDDEHVERTVETARWAREYIREELDA----P-----TWESAGNFVLAEV 305 (357)
T ss_pred CHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC----c-----cCCCCCCEEEEEC
Confidence 99999888643 24667788888888777642000 12233333333333333321 1 1246677777765
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. +..++++.|.++||.+.++. .+++|+++ .+++++++++++|+++++
T Consensus 306 ~------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 306 G------DASAVAEAAQERGVIVRDCTSFGLPECIRITC---GTREETERAVEVLNEVLA 356 (357)
T ss_pred C------CHHHHHHHHHHCCEEEEECccCCCCCeEEEec---CCHHHHHHHHHHHHHHhc
Confidence 3 35678899999999998864 57999993 357899999999999875
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=226.97 Aligned_cols=325 Identities=14% Similarity=0.129 Sum_probs=208.0
Q ss_pred CHHHHHHHHHHHHHccc-----cCCCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHHHHHHHHHH-HhchhcccC
Q 012138 93 HPKIMKALQEQAEKLTL-----SSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLAR-KWGYVKKKF 162 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~~~al~~~~-~~~~~~~~~ 162 (470)
+..+.+++.+.++.... .......++++.+++++.+.. ..++|++|+|+++|+..+++++. .
T Consensus 90 P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~-------- 161 (481)
T PTZ00377 90 PADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD-------- 161 (481)
T ss_pred CHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccC--------
Confidence 45677777766654321 111123445666777776543 34689999999999999999775 3
Q ss_pred CCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhc---CCCeEEEE-EccccCCC
Q 012138 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKES---GDQIAGFL-FEPIQGEA 237 (470)
Q Consensus 163 ~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~---~~~~~~vi-~epi~n~~ 237 (470)
+|+ .|++..|+|.+........+..... .+..++ .+.+ |+++|++++++. +.++++++ ++| +|||
T Consensus 162 -~gD-~Vlv~~P~y~~y~~~~~~~g~~~v~----v~~~~~~~~~~---d~~~l~~~l~~~~~~~~~~k~l~l~~P-~NPT 231 (481)
T PTZ00377 162 -PSD-GVMIPIPQYPLYSAAITLLGGKQVP----YYLDEEKGWSL---DQEELEEAYEQAVRNGITPRALVVINP-GNPT 231 (481)
T ss_pred -CCC-EEEECCCCchhHHHHHHHcCCEEEE----EEeccccCCCC---CHHHHHHHHHHHHhcCCCeeEEEEECC-CCCC
Confidence 455 7888999997665444333322111 111111 1122 789999998752 12677665 655 9999
Q ss_pred ccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC-Ccc-cccc--CCCCc------ce---eeccccc-c-CCCcce
Q 012138 238 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG-RML-ASDW--EEVRP------DM---VILGKAL-G-GGVIPV 302 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G-~~~-~~~~--~~~~p------di---~s~sK~l-~-gG~~~i 302 (470)
|.++ +.+.+++|+++|++||++||+||+|..+.+.+ ..+ .+.. .+..+ .+ -+|||++ + +|+ |+
T Consensus 232 G~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~Gl-Ri 309 (481)
T PTZ00377 232 GQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGR-RG 309 (481)
T ss_pred CcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcC-ce
Confidence 9999 99999999999999999999999999765532 221 1100 01111 13 3899986 5 799 99
Q ss_pred eEEEe---cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH-----------hh-hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 303 SAVLA---DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI-----------RD-EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 303 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-----------~~-~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
||+++ ++++++.+.... ...++.+.+++.++.++++.. +. ..+++.++++.+.+.+.|+++
T Consensus 310 G~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~--- 385 (481)
T PTZ00377 310 GYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKI--- 385 (481)
T ss_pred EEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99986 888888876533 234467888888888877421 00 112223445555555555442
Q ss_pred CCCceEEEeccceeEEE-EeccCCC--c-------hhHHHHH-HHHHHcCceeccCC-------CCEEEEecCCCCCHHH
Q 012138 368 FPNYVKEVRGRGLFNAV-EFDKTAL--P-------VSAYDIC-LKMKERGILAKPTH-------DTIVRLTPPLSISSNE 429 (470)
Q Consensus 368 ~p~~~~~~~~~g~~~~~-~~~~~~~--~-------~~~~~~~-~~l~~~Gv~~~~~~-------~~~iR~~~~~~~t~e~ 429 (470)
| .+....++|.|+.| .+..+.. . .+...++ ..|.++||.+.|+. .+++|++. ..++++
T Consensus 386 -~-g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~--~~~~e~ 461 (481)
T PTZ00377 386 -E-GVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITI--LPPEEQ 461 (481)
T ss_pred -C-CcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEE--CCCHHH
Confidence 2 45666777776666 3321110 0 0123344 44556699998763 35899994 478899
Q ss_pred HHHHHHHHHHHHhcccC
Q 012138 430 LQEGSKALHDVLELDLP 446 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~~ 446 (470)
+++++++|.++++ +..
T Consensus 462 l~~~l~rl~~~~~-~~~ 477 (481)
T PTZ00377 462 IEEMVKKIKEFHE-SFM 477 (481)
T ss_pred HHHHHHHHHHHHH-HHH
Confidence 9999999999987 543
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-25 Score=216.31 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=205.4
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHh
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKW 155 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~ 155 (470)
.++|+.+|. +++|...+.+.+ ..+..+ +.. ..+|.+.++++++.++|++|+|+++|+..++.+ .
T Consensus 21 ~~i~l~~ne--~p~~~~~~~~~~---~~~~~y-------p~~-~~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~~--~- 84 (330)
T PRK05664 21 DWLDLSTGI--APWPWPVPAIPA---DAWARL-------PET-DDGLEAAARAYYGAPQLLPVAGSQAAIQALPRL--R- 84 (330)
T ss_pred HheeecCCc--CCCCCCCcccCH---HHHHhC-------CCC-hHHHHHHHHHHhCCCCEEECcCHHHHHHHHHHc--c-
Confidence 568888886 345544343322 222221 111 268888899999999999999999999877531 1
Q ss_pred chhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE-EEEEcccc
Q 012138 156 GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA-GFLFEPIQ 234 (470)
Q Consensus 156 ~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~-~vi~epi~ 234 (470)
+|+ .|++.+|+|.+....+...+.. +..+ ++++++++++ +++ +++++| +
T Consensus 85 --------~gd-~v~v~~P~y~~~~~~~~~~g~~-------------~~~v---~~~~~~~~~~----~~~~v~l~nP-~ 134 (330)
T PRK05664 85 --------APG-RVGVLSPCYAEHAHAWRRAGHQ-------------VREL---DEAEVEAALD----SLDVLVVVNP-N 134 (330)
T ss_pred --------CCC-EEEEcCCChHHHHHHHHHcCCe-------------EEEe---chhhHhhhhc----CCCEEEEeCC-c
Confidence 455 7889999997665444333221 2344 3556776664 333 466888 9
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHHHHh
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVML 313 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~ 313 (470)
||||.++ +.+.+++|.++|+++|++||+||+|.++............+-..-+.||||+++ +|+ |+||+++++++++
T Consensus 135 NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~Gl-RiG~~v~~~~l~~ 212 (330)
T PRK05664 135 NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGA-RLGFVLAEPALLR 212 (330)
T ss_pred CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCc-ceEEEEeCHHHHH
Confidence 9999999 899999999999999999999999987643222222211111112449999998 999 9999999999998
Q ss_pred hcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc
Q 012138 314 CIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392 (470)
Q Consensus 314 ~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~ 392 (470)
.+... ..+++.+.+++.++.++|+... .+..++.++++++++.+.|++++ +....+.+.++++.+ +
T Consensus 213 ~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~------~~~~~~~~~f~~~~~--~--- 279 (330)
T PRK05664 213 ALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHG------LTPAGGCALFQWVRT--E--- 279 (330)
T ss_pred HHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC------CcccCCcceEEEEec--C---
Confidence 88643 2345667788888887776422 13456666667777777776641 221122224444432 2
Q ss_pred hhHHHHHHHHHHcCceeccC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 393 VSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 393 ~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.++.+.|.++||.+... ..+++||+. ..++++++++++.|+++.+
T Consensus 280 -~~~~~~~~l~~~gi~v~~f~~~~~iRis~--~~~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 280 -DAAALHEFLARRGILTRLFEQPASLRFGL--PADEADWARLDQALLAYRK 327 (330)
T ss_pred -CHHHHHHHHHHCCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHHHh
Confidence 4678999999999998754 367999994 3378889999999988776
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=223.29 Aligned_cols=341 Identities=15% Similarity=0.151 Sum_probs=207.5
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
|+.++++..|-........++.+.+++.+.+... .+.+.....++++.+++++.+..| .++|++|+|+++|+.
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~ 110 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIA 110 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHH
Confidence 4445566544221101235677888888876542 122222344567778888776543 467999999999998
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCC
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
.++. +.. +|+ .|++.+|+|++........ ...... .+..+ +.+.+ |+++|+++++++ .+
T Consensus 111 ~~~~-l~~---------~Gd-~Vlv~~P~Y~~~~~~~~~~~g~~~v~----v~~~~~~~~~~---d~~~l~~~~~~~-~~ 171 (433)
T PRK06855 111 KIYG-LLR---------REA-RVIGPSPAYSTHSSAEAAHAGYPPVT----YRLDPENNWYP---DLDDLENKVKYN-PS 171 (433)
T ss_pred HHHH-hcC---------CCC-eEEEeCCCCchHHHHHHHhcCCeEEE----EecccccCCCC---CHHHHHHHHhcC-CC
Confidence 8875 332 455 7888999998754321111 111100 01111 11112 899999998742 14
Q ss_pred eEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccc-ccC-C-CCcceeecccccc-CC
Q 012138 225 IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LAS-DWE-E-VRPDMVILGKALG-GG 298 (470)
Q Consensus 225 ~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~-~~~-~-~~pdi~s~sK~l~-gG 298 (470)
+++++ ++| +||||.++ +.+.+++|.++|++||++||+||+|..+.+.+.. ... +.. + ...-+.+|||.++ +|
T Consensus 172 ~~~i~l~~P-~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pG 249 (433)
T PRK06855 172 IAGILLINP-DNPTGAVY-PKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPG 249 (433)
T ss_pred ceEEEEECC-CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCc
Confidence 56555 666 99999999 9999999999999999999999999987655532 111 111 1 1123459999997 99
Q ss_pred CcceeEEEec-----H---HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 299 VIPVSAVLAD-----K---EVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 299 ~~~ig~v~~~-----~---~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
+ |+||++++ + .+++.+..... ...+.+.+.+.++.++++.- ++ ++.++.++++.+.+.+.|++
T Consensus 250 l-RiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~--- 324 (433)
T PRK06855 250 S-RCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKD--- 324 (433)
T ss_pred c-eEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 9 99999972 2 23333322111 23346677777777666421 11 22333444444445444433
Q ss_pred hCCCceEEEeccceeEEE-EeccCC------Cc------------------hhHHHHHHH-HHHcCceeccCC-----CC
Q 012138 367 QFPNYVKEVRGRGLFNAV-EFDKTA------LP------------------VSAYDICLK-MKERGILAKPTH-----DT 415 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~~~~-~~~~~~------~~------------------~~~~~~~~~-l~~~Gv~~~~~~-----~~ 415 (470)
+| .+...++.|.|+.| .++... .. .+..+++.. +.++||.+.|+. .+
T Consensus 325 -~~-~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~ 402 (433)
T PRK06855 325 -VP-GLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELN 402 (433)
T ss_pred -CC-CeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCC
Confidence 22 34445676766655 333210 00 024456655 556699998873 34
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
.+||+... .++++|++++++|.++++ +
T Consensus 403 ~~Rls~~~-~~~~~i~~~~~~l~~~~~-~ 429 (433)
T PRK06855 403 GFRVTLLE-RDEEKFEWIYQTLAEKIE-E 429 (433)
T ss_pred ceEEEECC-CcHHHHHHHHHHHHHHHH-H
Confidence 69999543 589999999999999987 5
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=221.74 Aligned_cols=333 Identities=12% Similarity=0.126 Sum_probs=214.7
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETA 148 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~a 148 (470)
..++||..+..... .+|.+.+++.+.+..... .......++++.+++++.+.++ .+++++|+|+++|+..+
T Consensus 30 ~~~i~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 106 (388)
T PRK07337 30 RDIIHMGIGEPDFT---APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLA 106 (388)
T ss_pred CCEEEeCCcCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHH
Confidence 34677777744322 568889998887753211 1111233455666666655444 36799999999999998
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+..+.. +|+ .|++..++|.+............ . ..+... +...+ |++++++.+.+ ++++
T Consensus 107 ~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~-~---~~~~~~~~~~~~---~~~~l~~~~~~---~~~~ 166 (388)
T PRK07337 107 CLALVE---------RGD-EVLMPDPSYPCNRHFVAAAEGRP-V---LVPSGPAERFQL---TAADVEAAWGE---RTRG 166 (388)
T ss_pred HHHhcC---------CCC-EEEEeCCCchhhHHHHHHcCCEE-E---EeecCCccCCcC---CHHHHHhhcCc---cceE
Confidence 887654 455 78888999866533322222111 1 011111 01122 78899888865 6666
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcce---eecccccc-CCCccee
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVS 303 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi---~s~sK~l~-gG~~~ig 303 (470)
|++..++||||.++ +.+.+++|.++|++||+++|+||+|.++...+..... ....+++ .+|||.++ +|+ |+|
T Consensus 167 v~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G~-RiG 242 (388)
T PRK07337 167 VLLASPSNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMTGW-RLG 242 (388)
T ss_pred EEEECCCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCchh-hee
Confidence 66444499999999 8999999999999999999999999987655432111 1122343 38899997 898 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH--Hhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-cc
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV--IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RG 379 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g 379 (470)
|+++++++++.+.........+.+.+++.++.++++. +.. ...++.++++++.+.+.|++++ ....+.+ .|
T Consensus 243 ~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~-----~~~~~~p~~g 317 (388)
T PRK07337 243 WLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLG-----FKVPVMPDGA 317 (388)
T ss_pred eeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcC-----CccccCCCee
Confidence 9999999988876543333445677777777666642 111 2344555666666666666531 1111233 45
Q ss_pred eeEEEEeccCC--CchhHHHHHHHH-HHcCceeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 380 LFNAVEFDKTA--LPVSAYDICLKM-KERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 380 ~~~~~~~~~~~--~~~~~~~~~~~l-~~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.|+++.++... ...++.+++++| .++||.+.|+. .+++|++.. .+++++++++++|.+++
T Consensus 318 ~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 318 FYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEEAVARLGKLF 387 (388)
T ss_pred EEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 66666654210 012567788775 46799998752 479999954 57999999999998875
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=219.63 Aligned_cols=338 Identities=13% Similarity=0.140 Sum_probs=212.7
Q ss_pred CCeEEeccCCcccc--cCCCCCHHHHHHHHHHHHHccc---cCCCCCCCcHHHHHHHHhhh---hCCCeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAV--NQGHCHPKIMKALQEQAEKLTL---SSRAFYNDKFPVFAERLTSM---FGYDMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~---~~~~~v~~~~sGteA~ 145 (470)
|+.++++..|.... .++ .++.+.+++.+.+..... .+.....++++.+++++.+. ...++|++|+|+++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al 108 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI 108 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence 45678888775421 122 568899998887765321 11112223344455554432 1346799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..++.++.. +|+ .|++..|+|..........+.. .. ..+...+ ...+ |+++|++.+++ +
T Consensus 109 ~~~~~~l~~---------~gd-~v~i~~P~y~~~~~~~~~~g~~-v~---~~~~~~~~~~~~---d~~~l~~~~~~---~ 168 (401)
T TIGR01264 109 EMCIAALAN---------AGQ-NILVPRPGFPLYETLAESMGIE-VK---LYNLLPDKSWEI---DLKQLESLIDE---K 168 (401)
T ss_pred HHHHHHhCC---------CCC-EEEEeCCCChhHHHHHHHcCCE-EE---EeecCCccCCCC---CHHHHHHHhcc---C
Confidence 999987754 455 7888889886543332222211 00 0011110 1122 78999888865 5
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCc-----ceeecccccc-C
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRP-----DMVILGKALG-G 297 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~p-----di~s~sK~l~-g 297 (470)
+++|++..++||||.++ +.+.+++|.++|+++|++||+||+|.+|.+.+..+ ... ...+ -+.||||.++ +
T Consensus 169 ~~~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 169 TAALIVNNPSNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred ceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCCCcEEEEccCcccCCCc
Confidence 67777544499999999 89999999999999999999999999876555321 111 1122 2349999855 8
Q ss_pred CCcceeEEEecH------HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 298 GVIPVSAVLADK------EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 298 G~~~ig~v~~~~------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
|+ |+||+++++ ++++.+.... ...++.+++++.++.+.|+...+ +..++.++++++++.+.|+++
T Consensus 246 Gl-RiG~iv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~---- 319 (401)
T TIGR01264 246 GW-RLGWIIIHDRRGILRDIRDGLVKLS-QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV---- 319 (401)
T ss_pred cc-eEEEEEecCcchhHHHHHHHHHHHh-hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 98 999999863 3444443211 12455677888887777753111 234445555555566665543
Q ss_pred CCceEEE-eccceeEEEEeccCC--CchhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 369 PNYVKEV-RGRGLFNAVEFDKTA--LPVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 369 p~~~~~~-~~~g~~~~~~~~~~~--~~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
| .+... +..|.|+++.+.... ...+..++++.|. ++||.+.|+. ++++|++. ..+++++++++++|.++
T Consensus 320 ~-~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~--~~~~~~l~~~l~rl~~~ 396 (401)
T TIGR01264 320 P-GLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVL--TVPVVMMEEACSRIQEF 396 (401)
T ss_pred C-CCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEE--cCCHHHHHHHHHHHHHH
Confidence 2 23323 345666666653210 0124577888876 6799998763 68999994 56789999999999999
Q ss_pred Hhccc
Q 012138 441 LELDL 445 (470)
Q Consensus 441 l~~~~ 445 (470)
++ ++
T Consensus 397 ~~-~~ 400 (401)
T TIGR01264 397 CE-RH 400 (401)
T ss_pred Hh-cc
Confidence 87 54
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=219.40 Aligned_cols=336 Identities=15% Similarity=0.176 Sum_probs=211.2
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-ccCCCCCCCcHHHHHHHHhhh---hCCCeEEecCChhHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSM---FGYDMVLPMNTGAEGVETALK 150 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~---~~~~~v~~~~sGteA~~~al~ 150 (470)
..++||..+....+ .++.+.+++.+...... +.+.....++++.+++++... ...++|++|+|+++|+..++.
T Consensus 30 ~~~i~l~~~~~~~~---~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 106 (397)
T PRK07568 30 IKVYHLNIGQPDIK---TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMM 106 (397)
T ss_pred CCEEEecCCCCCCC---CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHH
Confidence 34667777643322 46788888776553221 111112333444555554321 135689999999999999988
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
.+.. +|+ .|++..++|....... ...+.... ..+...+ ..+...++++|++++++ ++++|++
T Consensus 107 ~l~~---------~gd-~Vl~~~p~y~~~~~~~-~~~g~~~~---~v~~~~~-~g~~~~~~~~l~~~~~~---~~~~v~i 168 (397)
T PRK07568 107 AICD---------PGD-EILVPEPFYANYNGFA-TSAGVKIV---PVTTKIE-EGFHLPSKEEIEKLITP---KTKAILI 168 (397)
T ss_pred HhcC---------CCC-EEEEecCCCccHHHHH-HHcCCEEE---EeecCcc-cCCCCCCHHHHHHhcCc---cceEEEE
Confidence 6643 455 6777778875432211 11111110 0011000 00111156888888865 6777775
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc-ccCCCCcce---eecccccc-CCCcceeE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS-DWEEVRPDM---VILGKALG-GGVIPVSA 304 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~-~~~~~~pdi---~s~sK~l~-gG~~~ig~ 304 (470)
..++||+|.++ +.+.+++|.++|+++|+++|+||+|.+|.+.+... .. ...+..+.+ .||||.++ +|+ |+||
T Consensus 169 ~~p~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~-R~G~ 246 (397)
T PRK07568 169 SNPGNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGA-RIGC 246 (397)
T ss_pred ECCCCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCc-ceEE
Confidence 44499999999 89999999999999999999999999886655321 11 111222233 39999998 698 9999
Q ss_pred EEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 305 VLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 305 v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
+++ ++++++.+..... ..++.+.+.+.++.++|+..++ +.+.+.++++.+.+.+.|+++ + .+....+.|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~p~g~~ 320 (397)
T PRK07568 247 LISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKI----P-GVVCEKPKGAF 320 (397)
T ss_pred EecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcC----C-CceecCCCcce
Confidence 997 4678776543222 2456777888777777753211 334555666666666666542 2 34444566665
Q ss_pred E-EEEeccCCCchhHHHHHHHHHH------cCceeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 382 N-AVEFDKTALPVSAYDICLKMKE------RGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 382 ~-~~~~~~~~~~~~~~~~~~~l~~------~Gv~~~~~~---------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ ++.++.. +..++++.|.+ +||.+.|+. .+++|+++ ..+++++++++++|.++++ +.
T Consensus 321 ~~~~~l~~~----~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~--~~~~~~~~~~~~~l~~~l~-~~ 393 (397)
T PRK07568 321 YIIAKLPVD----DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAY--VLNEEDLKRAMEILKEALE-KY 393 (397)
T ss_pred EEEEecCCC----CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEE--eCCHHHHHHHHHHHHHHHH-Hh
Confidence 5 4444321 46678888865 599988752 36999994 4678999999999999998 65
Q ss_pred C
Q 012138 446 P 446 (470)
Q Consensus 446 ~ 446 (470)
.
T Consensus 394 ~ 394 (397)
T PRK07568 394 N 394 (397)
T ss_pred h
Confidence 4
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=220.05 Aligned_cols=316 Identities=19% Similarity=0.219 Sum_probs=212.1
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~ 152 (470)
.++|||.++... ++ .+|++++++.+++..... |......++++.++++++ .+++++++|+++++..+++.+
T Consensus 19 ~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l 91 (346)
T TIGR01141 19 KEVIKLNSNENP--FG-PPPKAKEALRAEADKLHR----YPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF 91 (346)
T ss_pred CceEEccCCCCC--CC-CCHHHHHHHHHhHHHhhc----CCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence 479999987543 33 679999999988754322 222334778888888876 467999999999998888766
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.. +|+ .|++..++|.......... +.... ..+...+ .. .|++++++++.. ++++|+++.
T Consensus 92 ~~---------~gd-~v~~~~p~y~~~~~~~~~~-g~~~~---~~~~~~~-~~---~d~~~l~~~~~~---~~~~v~l~~ 150 (346)
T TIGR01141 92 LE---------PGD-AVLVPPPTYSMYEISAKIH-GAEVV---KVPLDED-GQ---LDLEDILVAIDD---KPKLVFLCS 150 (346)
T ss_pred cC---------CCC-EEEEcCCCHHHHHHHHHHc-CCeEE---EeccCCC-CC---CCHHHHHHhcCC---CCCEEEEeC
Confidence 43 454 7888888874332221111 11111 1111111 11 288999887654 678888766
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee---ecccccc-CCCcceeEEEec
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~---s~sK~l~-gG~~~ig~v~~~ 308 (470)
++||+|.++ +.+.++++.+.|+ +|+++|+||+|.++...+... ......++++ ++||.++ +|+ |+|+++++
T Consensus 151 p~NptG~~~-~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~ 225 (346)
T TIGR01141 151 PNNPTGNLL-SRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLSKAFGLAGL-RIGYAIAN 225 (346)
T ss_pred CCCCCCCCC-CHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhhHhhhchhh-hceeeecC
Confidence 699999999 5555665555555 599999999999765432221 1111123433 8899995 788 99999999
Q ss_pred HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 309 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++++.++... ..++.+++++.++.+.++... -+..+++++++.+++.+.|+++ | .+....+.|.++++.++
T Consensus 226 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~g~~~~~~~~ 298 (346)
T TIGR01141 226 AEIIDALNKVR--APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL----P-GLEVYPSDANFVLIRFP 298 (346)
T ss_pred HHHHHHHHhcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc----C-CCEECCCcCCEEEEecC
Confidence 99998886532 356678888888877775432 1345566666666676666553 2 23333446777777654
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
. +++++.++|.++||.+.++. ++++|+++. ++++++++++.|+
T Consensus 299 ~-----~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 299 R-----DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred C-----CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 2 46789999999999998864 589999943 8999999998773
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=217.37 Aligned_cols=319 Identities=16% Similarity=0.195 Sum_probs=206.7
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEe-cCChhHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLP-MNTGAEGVETA 148 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~-~~sGteA~~~a 148 (470)
.+++.++||..+... ++ .+|.+.+++.+.+..... +......++++.++++++. +++++ ++|.++++..+
T Consensus 31 ~~~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~ 103 (361)
T PRK00950 31 IDPESIIKLGSNENP--LG-PSPKAVEAIEKELSKIHR----YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTL 103 (361)
T ss_pred CCccceEEccCCCCC--CC-CCHHHHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHH
Confidence 356688999887432 44 678999998887765332 2233457888888888874 56888 67777888888
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++.+.+ +|+ .|++..++|..........+. .... .+. .+...+ |++++++.++. +++++
T Consensus 104 ~~~~~~---------~gd-~vlv~~p~y~~~~~~~~~~g~-~~~~---~~~-~~~~~~---~~~~l~~~~~~---~~~~v 162 (361)
T PRK00950 104 MRTFID---------PGD-EVIIPTPTFSYYEISAKAHGA-KPVY---AKR-EEDFSL---DVDSVLNAITE---KTKVI 162 (361)
T ss_pred HHHhcC---------CCC-EEEEcCCChHHHHHHHHHcCC-EEEE---eec-CCCCCc---CHHHHHHHhcc---CCCEE
Confidence 876643 455 677788887554332222111 1110 010 001122 78999888864 56776
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEE
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVL 306 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~ 306 (470)
+++.++||+|.+++ .+++.++|+++|+++|+||+|.+|. .+.... ....+....+.||||.++ +|+ |+||++
T Consensus 163 ~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~~~ 236 (361)
T PRK00950 163 FLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGL-RIGYGF 236 (361)
T ss_pred EEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCchh-hcchhc
Confidence 65455999999997 7788889999999999999998774 221111 111111122349999998 898 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
+++++++.+... ...++.++++++++.++++..+. +...++.+++++++.+.|. +....+.|.++++.
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---------~~~~~~~~~~i~~~ 305 (361)
T PRK00950 237 VPEWLIDYYMRA--KTPFSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP---------FKVYPSEANFVLVD 305 (361)
T ss_pred CCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---------eeECCCcceEEEEE
Confidence 999998877643 33455677787777766642110 1122233333333333222 22223456667766
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+. . .++.++++.|.++||.+.++ .++++|+++. +.+++++++++|+++++
T Consensus 306 ~~-~---~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~il~ 361 (361)
T PRK00950 306 VT-P---MTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKEIVE 361 (361)
T ss_pred CC-C---CCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHHHhC
Confidence 62 2 36789999999999999764 2568999943 78899999999998763
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=217.81 Aligned_cols=324 Identities=14% Similarity=0.044 Sum_probs=203.2
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETA 148 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~a 148 (470)
|+.++||..|.+. ++ .++.+.+++.+.......++. ....++++.+++++++.+| .++|++|+|+++|+..+
T Consensus 23 ~~~~i~l~~~~p~--~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~ 99 (374)
T PRK05839 23 EYKGLDLTIGEPQ--FE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNF 99 (374)
T ss_pred CCCeEEcCCCCCC--CC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHH
Confidence 7789999988644 33 467888888776644332222 2234567788888877654 56799999999999888
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
++++..- ++++.|++..|+|..........+.. ... .+...+ ...+ |+.+. .+ + ++++
T Consensus 100 ~~~~~~~--------~~gd~vlv~~P~y~~~~~~~~~~g~~-v~~---v~~~~~~~~~~---d~~~~--~~-~---~~k~ 158 (374)
T PRK05839 100 PQFVLFD--------KQNPTIAYPNPFYQIYEGAAIASRAK-VLL---MPLTKENDFTP---SLNEK--EL-Q---EVDL 158 (374)
T ss_pred HHHHhcC--------CCCCEEEECCCCchhhHHHHHhcCCE-EEE---eecccccCCcC---Ccchh--hh-c---cccE
Confidence 7765310 13458888899986654443322221 100 011000 0111 22222 22 2 5677
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc---------CCCCcceeecccccc-C
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW---------EEVRPDMVILGKALG-G 297 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~---------~~~~pdi~s~sK~l~-g 297 (470)
|++..++||||.++ +.+.+++|+++|++||++||+||+|..|...+....... ++...-+.+|||.++ +
T Consensus 159 v~i~nP~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~ 237 (374)
T PRK05839 159 VILNSPNNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAP 237 (374)
T ss_pred EEEeCCCCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCc
Confidence 77444499999999 999999999999999999999999998743322211110 011112349999975 8
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
|+ |+||+++++++++.+........++.+.+.+.++.+++.. ++ +.++++++++.+.+.+.| + +. .
T Consensus 238 Gl-RiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l-------~--~~-~ 305 (374)
T PRK05839 238 GL-RSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLD-DEHAEFFRNIYAKNLKLAREIL-------G--IT-I 305 (374)
T ss_pred cc-eeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhc-------C--CC-C
Confidence 98 9999999999988875443333445566666666655531 11 122333333333332221 1 11 2
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH--------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~--------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..|.|+++.+. +..+++++|.+ +||.+.|+. .+++|++. ..+++++++++++|.++++
T Consensus 306 p~gg~fi~~~~~------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~--~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 306 PPATFYVWLPVD------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIAL--VYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred CCeeEEEEEeCC------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence 334455555442 34678888875 799998852 48999995 4689999999999999875
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=214.34 Aligned_cols=318 Identities=18% Similarity=0.213 Sum_probs=212.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~ 152 (470)
..++||..+... ++ .++.+.+++.+.+.....+ ......++.+.++++++ .++|++|+|+++++..+++++
T Consensus 19 ~~~~~l~~~~~~--~~-~p~~~~~a~~~~~~~~~~Y----~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~ 91 (354)
T PRK06358 19 NMILDFSANINP--LG-VPESLKQAITENLDKLVEY----PDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT 91 (354)
T ss_pred cceEEecCCCCC--CC-CCHHHHHHHHHHHHhhhcC----CCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh
Confidence 346899876533 33 4789999998877554322 22224577777777764 568999999999999888764
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEEEE-E
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAGFL-F 230 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~vi-~ 230 (470)
. ++ .|++..|+|+.........+.. ... .+...+ .+.+ | +++.+.+.. ++++++ +
T Consensus 92 -~----------~~-~v~i~~P~y~~~~~~~~~~g~~-~~~---~~~~~~~~~~~---d-~~~~~~~~~---~~~~v~~~ 148 (354)
T PRK06358 92 -K----------PK-KVLILAPTFAEYERALKAFDAE-IEY---AELTEETNFAA---N-EIVLEEIKE---EIDLVFLC 148 (354)
T ss_pred -C----------CC-cEEEecCChHHHHHHHHHcCCe-eEE---EeCccccCCCc---c-HHHHHhhcc---CCCEEEEe
Confidence 2 23 6778999987654433222211 100 011000 0111 4 444444543 566664 6
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcc---eeecccccc-CCCcceeEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPD---MVILGKALG-GGVIPVSAV 305 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pd---i~s~sK~l~-gG~~~ig~v 305 (470)
+| +||||.++ +.+.+++|.++|++||+++|+||+|..|...+.... .......+. +.||||.++ +|+ |+||+
T Consensus 149 ~P-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~-RiG~l 225 (354)
T PRK06358 149 NP-NNPTGQLI-SKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGL-RLGYG 225 (354)
T ss_pred CC-CCCCCCcc-CHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcch-hheee
Confidence 77 99999999 999999999999999999999999998765543211 111111122 349999999 999 99999
Q ss_pred Ee-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 306 LA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 306 ~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
++ ++.+++.+.... ..++.+.+++.++.++|+.-.. +...+.+++.++.+.+.|+++ | .+....+.|.|++
T Consensus 226 v~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~-~~~~~~~~g~f~~ 298 (354)
T PRK06358 226 LTSNKNLAEKLLQMR--EPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF----K-GIKVYKPSVNFIF 298 (354)
T ss_pred ecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC----C-CcEEcCCcceEEE
Confidence 97 467777775432 2566788888888777742111 233445555566666666542 2 3444466788877
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+.++ +..++++.|.++||.+.++. .+++|++ ..+.++.++++++|++++
T Consensus 299 ~~~~------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls---~~~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 299 FKLE------KPIDLRKELLKKGILIRSCSNYRGLDENYYRVA---VKSREDNKKLLKALEVIL 353 (354)
T ss_pred EEcC------chHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence 7654 23689999999999998752 4689999 568899999999998875
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=216.02 Aligned_cols=324 Identities=15% Similarity=0.155 Sum_probs=211.4
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al 149 (470)
.++..++||..|... +| .++.+.+++.+.+..... |......++.+.++++++ .++|++++|+++++..++
T Consensus 17 ~~~~~~i~l~~~~~~--~~-~p~~~~~a~~~~~~~~~~----y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~ 89 (356)
T PRK08056 17 ISPDQLLDFSANINP--LG-MPVSLKRAIIDNLDCAER----YPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVV 89 (356)
T ss_pred CChhhEEEeccccCC--CC-CCHHHHHHHHHHHHhccc----CcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHH
Confidence 346678899877433 44 778999999887765432 222235778888888775 467999999999999888
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
+.+ . +++ +++..|+|..........+.. ... .+..++ .+.. | +++++.+.. ++++|
T Consensus 90 ~~l-~---------~g~--viv~~P~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~~---~-~~~~~~~~~---~~k~v 146 (356)
T PRK08056 90 SGL-K---------PRR--AMIVTPGFAEYRRALQQVGCE-IRR---YSLREADGWQL---T-DAILEALTP---DLDCL 146 (356)
T ss_pred HHh-C---------CCC--EEEeCCCcHHHHHHHHHcCCe-EEE---EecccccCCCc---c-HHHHHhccC---CCCEE
Confidence 764 3 343 555678885443322222111 110 011000 0011 2 344444543 67777
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc--ccccCCCCcceeecccccc-CCCcceeEE
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML--ASDWEEVRPDMVILGKALG-GGVIPVSAV 305 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~--~~~~~~~~pdi~s~sK~l~-gG~~~ig~v 305 (470)
++..++||||.++ +.+.+++|.++|++||++||+||+|.+|...+..+ .........-+.||||.++ +|+ |+||+
T Consensus 147 ~l~~p~NPTG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~ 224 (356)
T PRK08056 147 FLCTPNNPTGLLP-ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGL-RLGYL 224 (356)
T ss_pred EEeCCcCCCCCCC-CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcch-hheee
Confidence 7544599999998 89999999999999999999999999875444211 1121211112349999999 998 99999
Q ss_pred Ee-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 306 LA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 306 ~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
++ ++++++.+... ...++.+.+++.++.++++.-. ....++.++++++++.+.|+++ + .+...++.|.+++
T Consensus 225 v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----~-~~~~~~~~~~~~~ 297 (356)
T PRK08056 225 VNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCAL----P-LLTVWPGRANYLF 297 (356)
T ss_pred ecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC----C-CcEEcCCCCcEEE
Confidence 97 46777766532 2345667777777766664110 1234455666666666666543 2 2333455677776
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+.. +..++++.|.++||.+.++. .+++|++. .+.++.+.+++.|+++++
T Consensus 298 ~~~~~-----~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 298 LRCER-----PDIDLQRALLTQRILIRSCANYPGLDSRYYRVAI---RSAAENERLLAALRNVLT 354 (356)
T ss_pred EEcCC-----ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEE---cCHHHHHHHHHHHHHHHc
Confidence 65542 35679999999999987653 36899993 478999999999998875
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=217.09 Aligned_cols=320 Identities=16% Similarity=0.168 Sum_probs=208.1
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~ 153 (470)
.++|+..+... +| .+|.+.+++.+.+.....+ ...-..++++.++++++. ++|++++|.++++..++....
T Consensus 23 ~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~y----~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~ 95 (352)
T PRK03321 23 GAIKLSSNETP--FG-PLPSVRAAIARAAAGVNRY----PDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA 95 (352)
T ss_pred cceeccCCCCC--CC-CCHHHHHHHHHHHHhcCcC----CCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc
Confidence 47888887544 33 5678999998877654332 233457788888888764 479999988888888877654
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
. +|+ .|++..++|...... ....+.... ..+..++ ..+ |++++++.++. ++++|+++.+
T Consensus 96 ~---------~gd-~Vli~~p~y~~~~~~-~~~~g~~~~---~v~~~~~-~~~---~~~~l~~~~~~---~~~~v~l~~p 154 (352)
T PRK03321 96 G---------PGD-EVIFAWRSFEAYPIL-VQVAGATPV---QVPLTPD-HTH---DLDAMAAAITD---RTRLIFVCNP 154 (352)
T ss_pred C---------CCC-EEEeCCCCHHHHHHH-HHHcCCEEE---EccCCCC-CCC---CHHHHHHhhcc---CCCEEEEeCC
Confidence 3 455 677777776432111 111111110 0111111 111 78999988865 6777776556
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCCCccee---ecccccc-CCCcceeEEEec
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVRPDMV---ILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~~pdi~---s~sK~l~-gG~~~ig~v~~~ 308 (470)
+||+|.+++ .+.+.++.+.| ++|+++|+||+|.+|.+.+.. .........++++ ||||.++ +|+ |+||++++
T Consensus 155 ~NPtG~~~~-~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~~v~~ 231 (352)
T PRK03321 155 NNPTGTVVT-PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGL-RVGYAVGH 231 (352)
T ss_pred CCCcCCCcC-HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHH-hhhhhcCC
Confidence 999999994 44444444443 269999999999987554432 1111122223443 8999998 898 99999999
Q ss_pred HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 309 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++++.+... ...++.+.+++.++.++|..... .+..++..+..+.+.+.|++. .+...++.|.|+++.+.
T Consensus 232 ~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~------~~~~~~~~g~~i~i~l~ 303 (352)
T PRK03321 232 PEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA------GWTVPPSQANFVWLPLG 303 (352)
T ss_pred HHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC------CCccCCCCCCEEEEeCC
Confidence 9999988743 35677888998888877753221 112222333334454554442 12223456777666553
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. ...++++.|.++||.+.+.+.+.+|++ ..+.+++++++++|+++++
T Consensus 304 --~---~~~~~~~~l~~~gI~v~~~~~~~iRi~---~~~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 304 --E---RTADFAAAAAEAGVVVRPFAGEGVRVT---IGAPEENDAFLRAARAWRA 350 (352)
T ss_pred --C---CHHHHHHHHHHCCEEEEccCCCcEEEe---eCCHHHHHHHHHHHHHHhc
Confidence 2 467899999999999998767789999 4689999999999999876
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=214.00 Aligned_cols=316 Identities=16% Similarity=0.098 Sum_probs=210.5
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~ 152 (470)
+.++++..+... ++ .+|.+.+++.+.+..... |..+...+|.+.++++++ .++|++|+|+++++..++..+
T Consensus 43 ~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~----Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l 115 (370)
T PRK09105 43 EGAVFLNANECP--LG-PSPAARDAAARSAALSGR----YDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF 115 (370)
T ss_pred CCcEEecCCCCC--CC-CCHHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence 445667666432 33 678999999887754332 222336778888888875 568999999999999999877
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-Ec
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FE 231 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi-~e 231 (470)
.. +|+ .|++.+|+|.+....+...+.. ... .+...+ ..+ |++++++. .. ++++++ ++
T Consensus 116 ~~---------~gd-~Vli~~P~y~~~~~~~~~~g~~-~~~---v~~~~~-~~~---d~~~l~~~-~~---~~~~v~l~n 173 (370)
T PRK09105 116 TS---------PTA-GLVTADPTYEAGWRAADAQGAP-VAK---VPLRAD-GAH---DVKAMLAA-DP---NAGLIYICN 173 (370)
T ss_pred cC---------CCC-EEEEeCCChHHHHHHHHHcCCe-EEE---ecCCCC-CCC---CHHHHHhc-CC---CCCEEEEeC
Confidence 54 455 7888999986654433322221 111 111111 111 67877765 22 456666 66
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcce---eecccccc-CCCcceeEEEe
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLA 307 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi---~s~sK~l~-gG~~~ig~v~~ 307 (470)
| +||||.++ +.+.++++.+.|+ +|+++|+||+|..|+..... .+..+..+++ .||||.++ .|+ |+||+++
T Consensus 174 P-~NPTG~~~-~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~~s~--~~~~~~~~~vi~~~SfSK~~g~~Gl-RiG~~v~ 247 (370)
T PRK09105 174 P-NNPTGTVT-PRADIEWLLANKP-AGSVLLVDEAYIHFSDAPSV--VDLVAQRKDLIVLRTFSKLYGMAGM-RLGLAAA 247 (370)
T ss_pred C-CCCCCcCc-CHHHHHHHHHhCC-CCcEEEEECchHHhccCcch--HHHHhhCCCEEEEecccHhhcCCcc-ceeeeec
Confidence 6 99999999 8888988888764 59999999999876432111 1111112343 38999998 898 9999999
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEe
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~ 386 (470)
++++++.+... ..+..+.+++.++.++|+..+- +..+++++++++++.+.|++++ +...++.|.|+++.+
T Consensus 248 ~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g------~~~~~~~~~f~~~~~ 318 (370)
T PRK09105 248 RPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKG------YKCTPSQANCFMVDV 318 (370)
T ss_pred CHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC------CCcCCCCCcEEEEeC
Confidence 99999888653 2344667777777777753111 3344556666666766666531 333456777776654
Q ss_pred ccCCCchhHHHHHHHHHHcCceecc---CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 387 DKTALPVSAYDICLKMKERGILAKP---THDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~---~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. . +..++++.|.++||.+.. ..++++|+++ .++++++++++.|+++++
T Consensus 319 ~--~---~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~---~~~~~~~~l~~al~~~~~ 369 (370)
T PRK09105 319 K--R---PAKAVADAMAKQGVFIGRSWPIWPNWVRVTV---GSEEEMAAFRSAFAKVMR 369 (370)
T ss_pred C--C---CHHHHHHHHHHCCcEEecCCCCCCCeEEEEc---CCHHHHHHHHHHHHHHhh
Confidence 3 2 567899999999999842 2368999993 368889999999988764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=214.54 Aligned_cols=321 Identities=15% Similarity=0.160 Sum_probs=205.6
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~ 151 (470)
++.+|||..+... ++ .+|.+.+++.+.+..... .|......++.+.++++++ .++|++|+|+++++..+++.
T Consensus 23 ~~~~i~l~~~~~~--~~-~~~~~~~a~~~~~~~~~~---~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~ 96 (353)
T PRK05387 23 LAKLIKLNTNENP--YP-PSPKVLEAIRAALGDDLR---LYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLA 96 (353)
T ss_pred ccceeeccCCCCC--CC-CCHHHHHHHHHHhhhhhh---cCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHH
Confidence 3567899988654 22 578999999887754211 1222234677777777775 46799999999999999997
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
+.. +|+ .|++.+|+|.......... +...... +... ...+ |++++++ . ....++++
T Consensus 97 l~~---------~gd-~vlv~~P~y~~~~~~~~~~-g~~~~~v---~~~~-~~~~---d~~~l~~---~---~~~v~~~~ 152 (353)
T PRK05387 97 FFN---------HDR-PLLFPDITYSFYPVYAGLY-GIPYEEI---PLDD-DFSI---DVEDYLR---P---NGGIIFPN 152 (353)
T ss_pred hcC---------CCC-EEEEeCCCHHHHHHHHHHc-CCEEEEe---ecCC-CCCC---CHHHHHh---c---CCEEEEeC
Confidence 765 465 7888888884433222111 1111100 1100 0112 6777752 1 22344566
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHH
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE 310 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~ 310 (470)
| +||||.++ +.+.+++|.+.++ |+++|+||+|..|+........+......-+.||||.++ +|+ |+||++++++
T Consensus 153 P-~NPtG~~~-~~~~~~~l~~~~~--~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R~G~~~~~~~ 227 (353)
T PRK05387 153 P-NAPTGIAL-PLAEIERILAANP--DSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGL-RVGFAIGHPE 227 (353)
T ss_pred C-CCCCCCCC-CHHHHHHHHHhCC--CcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhh-hceeeecCHH
Confidence 6 99999999 6666666655443 999999999987742111101111111112338999998 998 9999999999
Q ss_pred HHhhcCcCCcc-CCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc
Q 012138 311 VMLCIQPGEHG-STFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388 (470)
Q Consensus 311 ~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~ 388 (470)
+++.+...... .+++.+.+++.++.++++..+ -++.+++++++++++.+.|++++ +...++.|.++++.++
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~- 300 (353)
T PRK05387 228 LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALG------FEVLPSKANFVFARHP- 300 (353)
T ss_pred HHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC------CeECCCcCcEEEEECC-
Confidence 98887644322 346678888888877775211 13455566666677777766541 2223445556555443
Q ss_pred CCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 389 TALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+..++++.|.++||.+.+. ..+++|+++. +++++++++++|++++.
T Consensus 301 ~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 301 S---HDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred C---CCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 2 25788999999999998543 2578999943 77999999999999875
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=214.88 Aligned_cols=321 Identities=12% Similarity=0.127 Sum_probs=209.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALK 150 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~ 150 (470)
.+..+||+..|..+ ++ .+|.+.+++.+. .... .|......++.+.++++++ .++|++|+|+++++..+++
T Consensus 50 ~~~~~i~l~~n~~p--~~-~~~~v~~a~~~~-~~~~----~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 50 KPEDIVKLDANENP--YG-PPPEVLEALGNM-KFPY----VYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMR 121 (380)
T ss_pred CccceEEccCCCCC--CC-CCHHHHHHHHhh-Hhhc----cCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHH
Confidence 35678999888533 33 678888887542 2111 1233345778888888875 4579999999999999988
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
.+.. +|+ .|++.+|+|..........+. .... .+... ...+ |+++|++++... ++++|++
T Consensus 122 ~~~~---------~gd-~Vlv~~P~y~~y~~~~~~~g~-~~~~---v~~~~-~~~~---d~~~l~~~~~~~--~~~~v~l 181 (380)
T PLN03026 122 CVLD---------PGD-KIIDCPPTFGMYVFDAAVNGA-EVIK---VPRTP-DFSL---DVPRIVEAVETH--KPKLLFL 181 (380)
T ss_pred HhcC---------CCC-EEEEcCCChHHHHHHHHHcCC-EEEE---eecCC-CCCc---CHHHHHHHHhcc--CCcEEEE
Confidence 7654 455 788888888543322222111 1110 01100 0112 789999888432 6777775
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEEec
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~ 308 (470)
..++||||.+++ .+++.++++.. +++|+||+|..|...+.... .+..+...-+-||||.++ +|+ |+||++++
T Consensus 182 ~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGl-RiGy~~~~ 255 (380)
T PLN03026 182 TSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGL-RVGYGAFP 255 (380)
T ss_pred eCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccc-cceeeecC
Confidence 556999999995 45555555543 89999999997754332211 111111112349999999 999 99999999
Q ss_pred HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 309 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++++.+.... ..++.+.+++.++.++|+..+- ++.++.+++.++++.+.|+++. .+...+..|.|+++.+.
T Consensus 256 ~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~-----~~~~~p~~~~f~~~~~~ 328 (380)
T PLN03026 256 LSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVP-----FLEPYPSDANFILCRVT 328 (380)
T ss_pred HHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCeECCCCCeEEEEECC
Confidence 99998876433 2466788888888888753111 3345566666677777776541 23333456777777654
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.. .++.++++.|.++||.+.++. .+++||++ .+.++++++++.|+++
T Consensus 329 ~~---~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~---~~~~~~~~l~~al~~~ 379 (380)
T PLN03026 329 SG---RDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSV---GKPEHTDALMEALKQL 379 (380)
T ss_pred CC---CCHHHHHHHHHHCCeEEEECCCCCCCCEEEEec---CCHHHHHHHHHHHHHh
Confidence 32 257789999999999987653 57999993 3778899999988764
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=213.84 Aligned_cols=321 Identities=17% Similarity=0.140 Sum_probs=211.9
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~ 150 (470)
+..++|+..+... ++ .+|.+++++.+.+...... .|......++.+.++++++. ++|++++|+++++..+++
T Consensus 25 ~~~~i~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~--~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 25 ATGMVKLDAMENP--YR-LPAELRAELGERLAEVALN--RYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CCCceeCcCCCCC--CC-CCHHHHHHHHHHhhccccc--cCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 4568888777432 33 7799999999888642211 12222346788888887764 379999999999999888
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
++.. +|+ .|++..|+|.+....+...+.. .. +.+...+ ..+ |+++|+++++++ ++++|++
T Consensus 100 ~~~~---------~gd-~vlv~~P~y~~~~~~~~~~g~~-~~---~i~~~~~-~~~---d~~~l~~~~~~~--~~~~v~l 159 (356)
T PRK04870 100 ACAK---------PGA-TVLAPEPGFVMYRMSAKLAGLE-FV---GVPLTAD-FTL---DLPAMLAAIAEH--RPALVFL 159 (356)
T ss_pred HhcC---------CCC-EEEECCCCHHHHHHHHHHcCCE-EE---EecCCCC-CCC---CHHHHHHHhhcC--CCCEEEE
Confidence 7654 455 7888899986544332222211 11 1111111 122 789999998753 6777775
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecH
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
..++||||.++ +.+.+++|.++| ++++|+||+|..|............+...-+.|||| ++ +|+ |+||+++++
T Consensus 160 ~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~Gl-RiG~~i~~~ 233 (356)
T PRK04870 160 AYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGL-RLGYLAGHP 233 (356)
T ss_pred cCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHH-hhhhhhCCH
Confidence 54599999999 788888888887 788999999987743211111111111122448999 55 798 999999999
Q ss_pred HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc
Q 012138 310 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388 (470)
Q Consensus 310 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~ 388 (470)
++++.+.... ..++.+.+++.++..+++..+. ++..++++++++.+.+.|+++ | .+...+..|.|+++.++
T Consensus 234 ~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~- 305 (356)
T PRK04870 234 AWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL----P-GVTVFPSAANFILVRVP- 305 (356)
T ss_pred HHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC----C-CcEECCCCCeEEEEECC-
Confidence 9988876433 3456777777777766653211 334455566666666666543 2 23434556767777554
Q ss_pred CCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 389 TALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+..++++.|.++||.+.++. .+++|+++ .+.+++++++++|++++
T Consensus 306 -----~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~ 356 (356)
T PRK04870 306 -----DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTV---GTPEENAQFLAALKAAL 356 (356)
T ss_pred -----CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeC---CCHHHHHHHHHHHHHhC
Confidence 35678899999999997652 57999993 37899999999998764
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=218.89 Aligned_cols=345 Identities=14% Similarity=0.088 Sum_probs=207.6
Q ss_pred eEEeccCCcccccCCCCC--HHHHHHHHHHHHHcc-------ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChh
Q 012138 76 KYLDFLSAYSAVNQGHCH--PKIMKALQEQAEKLT-------LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGA 142 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGt 142 (470)
..+||..+... + ... +.+.+++.+.++... +.......++++.+++++.+.+| .++|++|+|++
T Consensus 31 ~~i~l~~g~p~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~ 107 (416)
T PRK09440 31 GAIMLGGGNPA--H-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ 107 (416)
T ss_pred CceeccCCCCC--c-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence 35788776432 1 122 345666666554311 11112234566777777766543 46899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEE-EccCccccccchhcccCCcccccCCCCCCCC--eeeecCCCHHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVS-CCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKVDFGDITALEKIFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~-~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~Le~~l~ 219 (470)
+|+..+++++.... .. .+|+ .|++ ..|+|.+....+............+.+...+ .+.+ |+++|+ +.
T Consensus 108 ~al~~~~~~l~~~~--~~--~~gd-~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~--~~ 177 (416)
T PRK09440 108 SAFFYLFNLFAGRR--AD--GSLK-KILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHV---DFEHLH--ID 177 (416)
T ss_pred HHHHHHHHHHhccc--cC--CCCC-eEEEecCCCchhhHHHhhccCceeecccccccccccccccCC---CHHHcc--cC
Confidence 99999998775310 00 0244 5666 6899877654222111000000001111111 0112 778776 22
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc--CCCCcceeeccccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW--EEVRPDMVILGKALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~--~~~~pdi~s~sK~l~g 297 (470)
. +++++++..++||||.++ +.+.+++|.++|++||++||+||+|..+........... .+...-+.||||...+
T Consensus 178 ~---~~~~i~l~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~p 253 (416)
T PRK09440 178 E---DTGAICVSRPTNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKLGLP 253 (416)
T ss_pred C---CceEEEEecCCCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEecccccCCC
Confidence 2 566666444499999999 999999999999999999999999974311110000100 1111224599998668
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--h---hhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--D---EKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
|+ |+||+++++++++.+........++.+.+.+.++.++++.-. + +.+++.++++.+.+.+.|.+..... .+
T Consensus 254 Gl-RiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~--~~ 330 (416)
T PRK09440 254 GV-RCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDE--PC 330 (416)
T ss_pred cc-eEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--Ce
Confidence 98 999999999999888654444445677888888877765211 1 1133334445555555555432111 13
Q ss_pred EEEecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 373 KEVRGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 373 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
....+. |.++++.++... .+..++.+.|.++||.+.|+. .+++||++. .+++++++++++|.
T Consensus 331 ~~~~p~gg~fiw~~~~~~~--~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~ 406 (416)
T PRK09440 331 LIHKPEGAIFLWLWFKDLP--ITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYV--QDDEEIEKGIAILA 406 (416)
T ss_pred EEecCCCceEEEEECCCCC--CCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEec--CCHHHHHHHHHHHH
Confidence 334565 455555554311 256789999999999998752 148999943 58999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ +.
T Consensus 407 ~~~~-~~ 412 (416)
T PRK09440 407 EEVE-KA 412 (416)
T ss_pred HHHH-HH
Confidence 9998 54
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=214.88 Aligned_cols=324 Identities=19% Similarity=0.206 Sum_probs=208.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHH-Hc-cccCCCCCC-CcHHHHHHHHhhhhC--------CC-eEEecCChhH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAE-KL-TLSSRAFYN-DKFPVFAERLTSMFG--------YD-MVLPMNTGAE 143 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~~~~~~-~~~~~l~~~l~~~~~--------~~-~v~~~~sGte 143 (470)
++|||.++-.. +++.+|.+.+++.+..+ .. ......|.. .-..++++.++++++ .+ .+++++|..+
T Consensus 2 ~~I~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~ 79 (363)
T PF00155_consen 2 DVINLGSNAPL--LLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA 79 (363)
T ss_dssp TEEESSSSSTS--STTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred CEEEEECCCCC--CcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence 46888877432 33355555555554443 11 111112222 225677777777665 56 6777776666
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec-------CCCHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD-------FGDITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~Le~ 216 (470)
++..++.++.. .+.+.|++.+|+|.+........ +.. +..++ +.|+++|++
T Consensus 80 ~~~~~~~~~~~---------~~~~~vlv~~P~y~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~d~~~l~~ 137 (363)
T PF00155_consen 80 ALFLLLRLLKI---------NPGDTVLVPDPCYPSYIEAARLL-GAE------------VIPVPLDSENDFHLDPEALEE 137 (363)
T ss_dssp HHHHHHHHHHS---------STTSEEEEEESSSTHHHHHHHHT-TSE------------EEEEEEEETTTTEETHHHHHH
T ss_pred chhhhhhcccc---------cccccceecCCcccccccccccc-Cce------------eeecccccccccccccccccc
Confidence 66666665521 13347888999986544333222 211 12222 238999999
Q ss_pred HHHhcC-C--CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c-cccCCCCcc---e
Q 012138 217 IFKESG-D--QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A-SDWEEVRPD---M 288 (470)
Q Consensus 217 ~l~~~~-~--~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~-~~~~~~~pd---i 288 (470)
.+++.. . ++++|++..++||||.++ +.+.+++|.++|++||++||+||+|.++......+ . .....-.++ +
T Consensus 138 ~l~~~~~~~~~~~~v~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~ 216 (363)
T PF00155_consen 138 ALDELPSKGPRPKAVLICNPNNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVV 216 (363)
T ss_dssp HHHTSHTTTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEE
T ss_pred ccccccccccccceeeeccccccccccc-ccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceee
Confidence 998742 2 356777666699999999 99999999999999999999999999765443211 0 111111223 3
Q ss_pred eecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHH
Q 012138 289 VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 289 ~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~ 362 (470)
.||||.++ .|+ |+|++++++++++.++....... .+.+.++++.+.+..-.. +..++.++++.+++.+.|+
T Consensus 217 ~S~SK~~g~~Gl-RvG~i~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 293 (363)
T PF00155_consen 217 GSLSKSFGLPGL-RVGYIVAPPELIERLRRFQRSGL--SSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALE 293 (363)
T ss_dssp EESTTTTTSGGG-TEEEEEEEHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccccc-ccccccchhhhhhhhhhcccccc--ccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHH
Confidence 39999998 898 99999999999998875433332 266666666665554321 4455666666666777666
Q ss_pred HHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+. .+....+.+.++.|..... .+..+++++|+++ ||.+.|+ ..+++|+++ ..+++|++++++++|
T Consensus 294 ~~------~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 294 EI------GITVLPPEAGFFLWVRLDP---NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HT------TSEEEHHSBSSEEEEEESH---HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred Hh------hhheeeccCccEEEEEccc---chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 64 2455556566666633221 1578999999998 9999874 378999996 589999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=212.74 Aligned_cols=330 Identities=17% Similarity=0.180 Sum_probs=212.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc-----CCCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS-----SRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGV 145 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~ 145 (470)
..++||..+.+. ...++.+.+++.+.++..... ......+++..+++++...+ ..+++++|+|+++++
T Consensus 33 ~~~~~l~~g~p~---~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al 109 (394)
T PRK06836 33 DNVFDFSLGNPS---VPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL 109 (394)
T ss_pred CCeEEecCcCCC---CCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence 356788777432 225678888888776542111 11122334455566555433 356899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..+++.+.. +|+ .|++.+++|.+.......... ... +.+..++...+ |++++++++++ ++
T Consensus 110 ~~~~~~l~~---------~gd-~Vli~~p~~~~~~~~~~~~g~-~v~---~v~~~~~~~~~---d~~~l~~~~~~---~~ 169 (394)
T PRK06836 110 NVALKAILN---------PGD-EVIVFAPYFVEYRFYVDNHGG-KLV---VVPTDTDTFQP---DLDALEAAITP---KT 169 (394)
T ss_pred HHHHHHhcC---------CCC-EEEEcCCCCccHHHHHHHcCC-EEE---EEecCCccCcC---CHHHHHhhcCc---Cc
Confidence 999887654 455 777788888765433222211 111 11111111122 78999998865 68
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHh------cCcEEEEeccccCCcccCCcc-c-cccCCCCcceeecccccc-
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNILMIADEIQSGLARSGRML-A-SDWEEVRPDMVILGKALG- 296 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~------~gillI~Dev~~g~g~~G~~~-~-~~~~~~~pdi~s~sK~l~- 296 (470)
++|++..++||+|.++ +.+.+++|.++|++ ||+++|+||+|.+|...+... . ...++...-+.||||.++
T Consensus 170 ~~v~~~~p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 248 (394)
T PRK06836 170 KAVIINSPNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSL 248 (394)
T ss_pred eEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccC
Confidence 8888666799999999 89999999999999 899999999999875444221 1 111211112348999998
Q ss_pred CCCcceeEEEecHHHHhh------cCcCCc-cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 297 GGVIPVSAVLADKEVMLC------IQPGEH-GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 297 gG~~~ig~v~~~~~~~~~------~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
+|+ |+||+++++++.+. +..... ...++.+.+.+.++...++ +....+.++++.+.+.+.|++.
T Consensus 249 pGl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~r~~l~~~L~~~----- 319 (394)
T PRK06836 249 PGE-RIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYKRNRDLLYDGLTEL----- 319 (394)
T ss_pred cce-eeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHhC-----
Confidence 898 99999998876432 111111 1123456666666554443 2223445566666666666553
Q ss_pred CceEEEeccceeEEE-EeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 370 NYVKEVRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
.+....+.|.++.| .++. . +..++++.|.++||.+.|+. .+++||++. .+++++++++++|+++++ +
T Consensus 320 -g~~~~~~~gg~~~~~~~~~-~---~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~-~ 391 (394)
T PRK06836 320 -GFECVKPQGAFYLFPKSPE-E---DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAK-E 391 (394)
T ss_pred -CCEeecCCceEEEEEeCCC-C---CHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-H
Confidence 13334555555555 3332 2 56788899999999998873 579999964 689999999999999998 6
Q ss_pred c
Q 012138 445 L 445 (470)
Q Consensus 445 ~ 445 (470)
.
T Consensus 392 ~ 392 (394)
T PRK06836 392 Y 392 (394)
T ss_pred h
Confidence 5
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=208.36 Aligned_cols=318 Identities=16% Similarity=0.148 Sum_probs=208.7
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~ 154 (470)
.+|+..|... ++ .++.+.+++.+.+..... ..|..+...++++.++++++. ++|++|+|+++++..+++++..
T Consensus 24 ~~~l~~~~~~--~~-~p~~~~~a~~~~~~~~~~--~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~ 98 (351)
T PRK14807 24 KYKMDANETP--FE-LPEEVIKNIQEIVKSSQV--NIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFIN 98 (351)
T ss_pred eeEccCCCCC--CC-CCHHHHHHHHHHhhcCcc--cCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcC
Confidence 3577766432 22 678999999887753221 123333457788888888764 6799999999999998887654
Q ss_pred hchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|+ .|++..|+|.+........+.. ... .+... ...+ |++++++++++. ++++|+++.++
T Consensus 99 ---------~gd-~Vlv~~p~y~~~~~~~~~~g~~-~~~---v~~~~-~~~~---d~~~l~~~~~~~--~~k~v~l~~p~ 158 (351)
T PRK14807 99 ---------KGD-VVIYPHPSFAMYSVYSKIAGAV-EIP---VKLKE-DYTY---DVGSFIKVIEKY--QPKLVFLCNPN 158 (351)
T ss_pred ---------CCC-EEEEeCCChHHHHHHHHHcCCe-EEE---eecCC-CCCC---CHHHHHHHhhcc--CCCEEEEeCCC
Confidence 455 7788899986543322222211 111 01100 0112 789999988753 67777765669
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEEecHHHH
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVM 312 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~ 312 (470)
||||.+++ .+++.++|++++.++|+||+|.+|. ...... .+..+...-+-||||.++ +|+ |+||++++++++
T Consensus 159 NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~Gl-RiG~~v~~~~~~ 232 (351)
T PRK14807 159 NPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY-GNTIVDVINEFENLIVLRTLSKAFGLAGL-RVGYAVANENIL 232 (351)
T ss_pred CCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc-ccchHHHhhhCCCEEEEecchHhcccchh-ceeeeecCHHHH
Confidence 99999996 6777778888888999999998763 211111 111111122349999998 999 999999999999
Q ss_pred hhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc
Q 012138 313 LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392 (470)
Q Consensus 313 ~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~ 392 (470)
+.+..... .+..+.+++.++.+.++.-.-++..+.++++++.+.+.|++ ++ .+...++.|.++++.+.
T Consensus 233 ~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~----~~-g~~~~~~~~~~~~i~~~----- 300 (351)
T PRK14807 233 KYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK----IP-GIKVYPSKTNFILVKFK----- 300 (351)
T ss_pred HHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----CC-CcEECcCCccEEEEEcC-----
Confidence 88864322 35567788888877775311123334455555556555543 22 34444556776666543
Q ss_pred hhHHHHHHHHHHcCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 393 VSAYDICLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 393 ~~~~~~~~~l~~~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+..++++.|.++||.+.+.. .+++||++ .+.++.+++++.|++++
T Consensus 301 -~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 301 -DADYVYQGLLERGILVRDFSKVEGLEGALRITV---SSCEANDYLINGLKELL 350 (351)
T ss_pred -CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHhh
Confidence 35788999999999986542 57899993 36788899999998764
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=217.16 Aligned_cols=336 Identities=13% Similarity=0.110 Sum_probs=205.2
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-------ccCCCCCCCcHHHHHHHHhhhh----CCCeEEecCChh
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-------LSSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGA 142 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGt 142 (470)
+..++|+..+.... ..+|.+.+++.+.+.... +.+.....++++.+++++.+.. ..++|++|+|++
T Consensus 33 ~~~~i~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIGDVTQ---PLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCcCCCC---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 45577888775332 267889999988886532 1111223345566666654433 346899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+++..++.+ .. +|+ .|++.+|+|.+............ ...+.+.+ ..+..++.+.-+.++.-+.+
T Consensus 110 ~al~~l~~~-~~---------~gd-~V~v~~P~Y~~~~~~~~~~g~~~-~~~~~~~~-~~~~~v~~~~~~~~~~d~~~-- 174 (409)
T PRK07590 110 CDTGNILDI-FG---------PDN-TIAVTDPVYPVYVDTNVMAGRTG-EANEDGRY-SGIVYLPCTAENNFVPELPE-- 174 (409)
T ss_pred HHHHHHHHh-cC---------CCC-EEEEeCCCCcchHHHHHHcCCcc-cccccccc-cceeEeecccccCCcccCcc--
Confidence 999875432 22 455 78889999977654333322210 00000000 00122222100001000111
Q ss_pred CCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC-C---CCcceeecccccc
Q 012138 223 DQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE-E---VRPDMVILGKALG 296 (470)
Q Consensus 223 ~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~-~---~~pdi~s~sK~l~ 296 (470)
.++++|+ ++| +||||.++ +.+.+++|.++|++||++||+||+|..|...+.. ...... + ....+.||||.++
T Consensus 175 ~~~k~i~l~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~ 252 (409)
T PRK07590 175 EKVDIIYLCFP-NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAG 252 (409)
T ss_pred cCceEEEEeCC-CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccC
Confidence 2677777 555 99999999 9999999999999999999999999987544422 111111 1 1123448999997
Q ss_pred -CCCcceeEEEecHHHHhhcCc-----------CCccCCC-CCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHH
Q 012138 297 -GGVIPVSAVLADKEVMLCIQP-----------GEHGSTF-GGNPLASAVAIASLDV-IRD--EKLAERSAHLGEELRQH 360 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~~~~~~~-----------~~~~~t~-~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l~~~ 360 (470)
+|+ |+||+++++++++.+.. ......+ +.+.+++.++.++++. ..+ ..+++.++++.+.+.+.
T Consensus 253 ~pGl-RiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~ 331 (409)
T PRK07590 253 FTGT-RCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREG 331 (409)
T ss_pred CcCc-eeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 998 99999999998873210 0112223 4577777777666642 111 23455666666667666
Q ss_pred HHHHHhhCCCceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~ 432 (470)
|++. .+....+. |.++++.+... .++.++++.|.+ +||.+.|+. .+++|++ +..+++++++
T Consensus 332 L~~~------~~~~~~~~g~~f~wi~~~~~---~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--~~~~~~~l~~ 400 (409)
T PRK07590 332 LESA------GFEVYGGVNAPYIWVKTPDG---MSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--AFGSRENVLE 400 (409)
T ss_pred HHhc------CCceecCCcceEEEEECCCC---CCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--ccCCHHHHHH
Confidence 6653 13333454 44555555432 256778888765 599998763 4699999 4578999999
Q ss_pred HHHHHHHHH
Q 012138 433 GSKALHDVL 441 (470)
Q Consensus 433 ~~~~l~~~l 441 (470)
++++|.+++
T Consensus 401 ~l~rl~~~~ 409 (409)
T PRK07590 401 AMERIKKAL 409 (409)
T ss_pred HHHHHHhhC
Confidence 999998764
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=210.75 Aligned_cols=340 Identities=14% Similarity=0.146 Sum_probs=211.9
Q ss_pred CCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhC--------CCeEEecCChh
Q 012138 73 EGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFG--------YDMVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~--------~~~v~~~~sGt 142 (470)
.|..++|+..+.+.. +.-..++.+.+++.+.++..... .| ...-..++.+.++++++ .+++++|+|++
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~--~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t 106 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN--GYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCS 106 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC--CCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChH
Confidence 466788888886531 22336788999998887643211 11 12223344444554442 35799999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhc
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKES 221 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~ 221 (470)
+|+..+++++.. +|+ .|++..++|.............. .+.+..++ ...+ |++++++++..
T Consensus 107 ~al~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~----~~~~~~~~~~~~~---d~~~l~~~~~~- 168 (403)
T TIGR01265 107 QAIEICIEALAN---------PGA-NILVPRPGFPLYDTRAAFSGLEV----RLYDLLPEKDWEI---DLDGLEALADE- 168 (403)
T ss_pred HHHHHHHHHhCC---------CCC-EEEEeCCCchhHHHHHHHcCCEE----EEecCCcccCCcc---CHHHHHHHhCc-
Confidence 999999997753 455 67888888754333222211110 01111111 1122 78999888865
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCc---ceeecccccc-
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRP---DMVILGKALG- 296 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~p---di~s~sK~l~- 296 (470)
+++++++..++||+|.++ +.+.+++|.++|+++|+++|+||+|..|.+.+..+ ....+.-.. -+.||||.++
T Consensus 169 --~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 245 (403)
T TIGR01265 169 --KTVAIVVINPSNPCGSVF-SRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVV 245 (403)
T ss_pred --CccEEEEecCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCC
Confidence 566666544499999999 89999999999999999999999999886555321 111111111 2338999964
Q ss_pred CCCcceeEEEec--HH-----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 297 GGVIPVSAVLAD--KE-----VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 297 gG~~~ig~v~~~--~~-----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
+|+ |+||+++. ++ +.+.+.... ..+++.+.+++.++.++++...+ +..++.++++.+.+.+.|+.
T Consensus 246 pGl-RiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 320 (403)
T TIGR01265 246 PGW-RLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD--- 320 (403)
T ss_pred Ccc-eEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 898 99999973 22 333332221 12345678888888777753111 23444455555555555544
Q ss_pred hCCCceEEEec-cceeEEEEeccCCC--chhHHHHHHHH-HHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 367 QFPNYVKEVRG-RGLFNAVEFDKTAL--PVSAYDICLKM-KERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 367 ~~p~~~~~~~~-~g~~~~~~~~~~~~--~~~~~~~~~~l-~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+| .+....+ .|.|+++.++.... ..+..++++.| .++||.+.|+. .+++|++. ..+++.+++++++|.
T Consensus 321 -~~-~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~--~~~~~~l~~~l~~l~ 396 (403)
T TIGR01265 321 -IP-GLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITI--TVPESMLEEACSRIK 396 (403)
T ss_pred -CC-CceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHH
Confidence 22 2333334 45566665543210 01466788886 46799998863 68999994 467899999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ +.
T Consensus 397 ~~~~-~~ 402 (403)
T TIGR01265 397 EFCE-RH 402 (403)
T ss_pred HHHH-hc
Confidence 9887 53
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=210.96 Aligned_cols=284 Identities=20% Similarity=0.208 Sum_probs=197.7
Q ss_pred HHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 119 FPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 119 ~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
+..+++++...++ .+.+++++|+++|+..++..+.. +|+ .|++..++|++...........
T Consensus 42 ~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~---------~g~-~vl~~~~~~~~~~~~~~~~~~~----- 106 (350)
T cd00609 42 REAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN---------PGD-EVLVPDPTYPGYEAAARLAGAE----- 106 (350)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHCCCE-----
Confidence 4444444444433 56799999999999999987754 344 7888888865543332222111
Q ss_pred CCCCCCCCeeeecCC-----C--HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 195 GFGPLLPGHLKVDFG-----D--ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~-----d--~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
...++.+ + .+.++.... +++++|++++++||+|.+. +.+++++|.++|+++|+++|+||+|
T Consensus 107 --------~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~ 174 (350)
T cd00609 107 --------VVPVPLDEEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGAVL-SEEELEELAELAKKHGILIISDEAY 174 (350)
T ss_pred --------EEEEecccccCCccCHHHHHhhcC---ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHhCCeEEEEecch
Confidence 1222221 1 144444433 3789999888899999998 7888999999999999999999999
Q ss_pred cCCcccCCcc----ccccCCCCcceeecccccc-CCCcceeEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH
Q 012138 268 SGLARSGRML----ASDWEEVRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVI 341 (470)
Q Consensus 268 ~g~g~~G~~~----~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~ 341 (470)
+++...+... ..+..+....+.+++|.++ +|. ++|++++++ ++.+.+.......+++.+..++.++..+++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (350)
T cd00609 175 AELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGL-RIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG 253 (350)
T ss_pred hhceeCCcccccccCcCccCcEEEEeecccccCCccc-ceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCc
Confidence 9876555432 1222222233448999999 887 999999999 78888876555556778888888888888866
Q ss_pred h--hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC------C
Q 012138 342 R--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------H 413 (470)
Q Consensus 342 ~--~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------~ 413 (470)
. -+.+.++++++.+++.+.|++.... .+ .....|.+.++.+.... ....+.+.|.+.||.+.++ .
T Consensus 254 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~-~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~gi~i~~~~~~~~~~ 326 (350)
T cd00609 254 EEHLEELRERYRRRRDALLEALKELGPL---VV-VKPSGGFFLWLDLPEGD---DEEFLERLLLEAGVVVRPGSAFGEGG 326 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc---cc-cCCCccEEEEEecCCCC---hHHHHHHHHHhCCEEEecccccccCC
Confidence 2 2556777788888888888775322 11 23455666666554332 4566777777779999876 5
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.+++|++++.. ++|+++++++|++
T Consensus 327 ~~~iRi~~~~~--~~~i~~~~~al~~ 350 (350)
T cd00609 327 EGFVRLSFATP--EEELEEALERLAE 350 (350)
T ss_pred CCeEEEEeeCC--HHHHHHHHHHhhC
Confidence 68999998766 9999999998863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=227.15 Aligned_cols=340 Identities=13% Similarity=0.114 Sum_probs=222.7
Q ss_pred EEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChh
Q 012138 68 SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGA 142 (470)
Q Consensus 68 ~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGt 142 (470)
++++.+|..+|++..|-. ....+|.+.+++.+.+....++ ..+.+++.++++++++.+|. ++|++++|.+
T Consensus 690 ~~~~~~g~~vI~LsinE~---d~ppPp~V~eAi~eal~~~~~s--~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~ 764 (1082)
T PLN02672 690 SVSGSQESSLIHMDVDES---FLPVPSAVKASIFESFVRQNIS--ESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSL 764 (1082)
T ss_pred CCcccCCCCEEEEeCCCC---CCCCCHHHHHHHHHHHhhcCCC--CCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHH
Confidence 345566788999988843 3338899999999887654331 12445688999999988653 2689999988
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhc
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKES 221 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~ 221 (470)
+++..+++++.. +|+ .|++..|+|......+...+... .. .+..+ +.+.+ |+++|++++++.
T Consensus 765 elL~lll~aLl~---------pGD-~VLVp~PtY~~Y~~~a~~~Ga~v-v~---Vpl~~e~gf~l---D~d~Le~al~~~ 827 (1082)
T PLN02672 765 ALFNKLVLCCVQ---------EGG-TLCFPAGSNGTYVSAAKFLKANF-RR---IPTKSSDGFKL---TAKTLASTLETV 827 (1082)
T ss_pred HHHHHHHHHHcC---------CCC-EEEEeCCChHHHHHHHHHcCCEE-EE---EecccccCCCC---CHHHHHHHhccC
Confidence 888888887754 455 88889999866554443332211 10 11111 11222 788999988642
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc---ccc----cC-CCCc--c---e
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML---ASD----WE-EVRP--D---M 288 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~---~~~----~~-~~~p--d---i 288 (470)
.+..+++++|.+||||.++ +.+.+++|.++|++||++||+||+|.++.+.+..+ .+. .+ ...+ . +
T Consensus 828 -~~~~I~L~nPnhNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL 905 (1082)
T PLN02672 828 -KKPWVYISGPTINPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALL 905 (1082)
T ss_pred -CCCEEEEECcCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEE
Confidence 1235666888449999999 99999999999999999999999999766554321 110 11 1011 1 2
Q ss_pred eecccccc-CCCcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--h-------hhHHHHHHHHHHHH
Q 012138 289 VILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--D-------EKLAERSAHLGEEL 357 (470)
Q Consensus 289 ~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~-------~~~~~~~~~~~~~l 357 (470)
.+|||.++ +|+ |+||++++ +++++.+....... ......+.++.+++..+. . .+.++.++++++++
T Consensus 906 ~SfSKkf~lpGL-RIGylIap~~eLi~~l~~~~~~s--~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L 982 (1082)
T PLN02672 906 GGLSTELLSGGH-EFGFLALNDSVLIDAFHSAPGLS--RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERL 982 (1082)
T ss_pred eCcHHhhccHHH-HheeEEeCCHHHHHHHHHhhhhc--CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 38898877 898 99999985 45888775421111 112222333333332221 1 23344466666666
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEecc-----------C----CCchhHHHHHHHHHHc-CceeccCC----CCEE
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-----------T----ALPVSAYDICLKMKER-GILAKPTH----DTIV 417 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~-----------~----~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~i 417 (470)
.+.|++. .+...++.|.|+.|.-.. . ....++.++++.|.++ ||.+.|+. ++++
T Consensus 983 ~e~L~~~------Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g~~ 1056 (1082)
T PLN02672 983 KETLEAC------GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPGYC 1056 (1082)
T ss_pred HHHHHHC------CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCCeE
Confidence 6666653 245567888888774211 0 0012567899999877 99999863 5899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 418 RLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 418 R~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
||+ +..+++++++++++|.++++
T Consensus 1057 RIs--fa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1057 RFS--FALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred EEE--ecCCHHHHHHHHHHHHHHHH
Confidence 999 55689999999999998775
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=204.81 Aligned_cols=298 Identities=15% Similarity=0.134 Sum_probs=198.2
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~ 153 (470)
...+|||..+. +++ .+|.+.+++.+.++.... | +....+.++++++++ ++|++|+|+++|+..++.++
T Consensus 7 ~~~~i~l~~~~--np~--~p~~~~~a~~~~~~~~~~----y--p~~~~l~~~ia~~~~-~~I~vt~G~~~al~~~~~~~- 74 (311)
T PRK08354 7 EEGLIDFSASV--NPY--PPEWLDEMFERAKEISGR----Y--TYYEWLEEEFSKLFG-EPIVITAGITEALYLIGILA- 74 (311)
T ss_pred ccceeEecCCC--CCC--CCHHHHHHHHHHHHHhhc----C--CChHHHHHHHHHHHC-CCEEECCCHHHHHHHHHHhh-
Confidence 34588998774 333 358888988877654321 2 134678888888888 47999999999998776433
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
. +|+ .|++.+|+|.+....+...+.+. ..++ .|++.|++.+++ ...+++++|
T Consensus 75 ~---------~gd-~vlv~~P~y~~~~~~~~~~g~~~-------------~~~~-~d~~~l~~~~~~---~~~vi~~~P- 126 (311)
T PRK08354 75 L---------RDR-KVIIPRHTYGEYERVARFFAARI-------------IKGP-NDPEKLEELVER---NSVVFFCNP- 126 (311)
T ss_pred C---------CCC-eEEEeCCCcHHHHHHHHHcCCEE-------------eecC-CCHHHHHHhhcC---CCEEEEecC-
Confidence 2 354 78889999876654443333221 1111 178889888763 334566788
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHHHH
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVM 312 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~ 312 (470)
+||||.++ +.+.+++|.++|++||+++|+||+|.+|...+... . .....-+.||||.++ +|+ |+||+++- .
T Consensus 127 ~NPTG~~~-~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~--~-~~~vi~~~S~SK~~~l~Gl-RiG~~v~~---~ 198 (311)
T PRK08354 127 NNPDGKFY-NFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP--E-GENIIKLRTFTKSYGLPGI-RVGYVKGF---E 198 (311)
T ss_pred CCCCCCcc-CHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc--C-CCcEEEEeccHhhcCCccc-eeeeeeeh---H
Confidence 99999999 99999999999999999999999999875543211 1 111123449999999 999 99999983 3
Q ss_pred hhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc
Q 012138 313 LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 392 (470)
Q Consensus 313 ~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~ 392 (470)
+.++... ..+..+.++.+++.+.++ +. .+++++..+.+++..+.+... . ...+.|.|+++.+.
T Consensus 199 ~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~----l-~~~~~~~~~~~~~~----- 261 (311)
T PRK08354 199 EAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFEKA----L-YVKSDANFFIKDVG----- 261 (311)
T ss_pred HHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHHHh----c-CCCCCCcEEEEECC-----
Confidence 4443222 234455566555544443 11 133344444444444443222 1 12467777776542
Q ss_pred hhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 393 VSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 393 ~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
++.++++.|.++||.+.|+. ++++||+ ..+.++.+++++.|+++
T Consensus 262 -~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~l~~al~~~ 309 (311)
T PRK08354 262 -DAEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEKLIRALREW 309 (311)
T ss_pred -CHHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHHHHHHHHHh
Confidence 35679999999999999874 4899999 34667788888888765
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=209.57 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=187.2
Q ss_pred CCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 114 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
|+.+...+|.+.++++++ .++|++|+|+++++..++++ .. ++ .|++.+|+|......+...+..
T Consensus 37 Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~~---------~~--~vv~~~P~y~~y~~~~~~~G~~-- 102 (332)
T PRK06425 37 YPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-IN---------VG--NIIIVEPNFNEYKGYAFTHGIR-- 102 (332)
T ss_pred CcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-hC---------CC--cEEEeCCChHHHHHHHHHcCCe--
Confidence 445557889999998886 45799999999999998863 33 33 3555689997665544433322
Q ss_pred cccCCCCCCCCeeeecCC----CHHHHHHHHHhcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEecc
Q 012138 192 AIRGFGPLLPGHLKVDFG----DITALEKIFKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~----d~~~Le~~l~~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev 266 (470)
+..+|.+ |.+. ++.. ++++|+ ++| +||||.++ +.+.+++|.++|++||++||+||+
T Consensus 103 -----------v~~vp~~~~~~~~~~----l~~~--~~k~v~l~nP-~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~ 163 (332)
T PRK06425 103 -----------ISALPFNLINNNPEI----LNNY--NFDLIFIVSP-DNPLGNLI-SRDSLLTISEICRKKGALLFIDEA 163 (332)
T ss_pred -----------EEEEeCCcccCcHHH----Hhhc--CCCEEEEeCC-CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecc
Confidence 1222221 3333 3322 566666 555 99999999 899999999999999999999999
Q ss_pred ccCCcccCCcccccc---CCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh
Q 012138 267 QSGLARSGRMLASDW---EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342 (470)
Q Consensus 267 ~~g~g~~G~~~~~~~---~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~ 342 (470)
|..|...+....... .+...-+.||||.++ +|+ |+||+++++++++.+... ...++.+.++++++. ....-.
T Consensus 164 Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl-RiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~ 239 (332)
T PRK06425 164 FIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSL-RIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDY 239 (332)
T ss_pred hhccccccchhHHHHhccCCCEEEEeecHHhcCCchh-hheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHH
Confidence 998854432111111 111112349999999 999 999999999999888643 233444444333221 111100
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------C
Q 012138 343 -DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------D 414 (470)
Q Consensus 343 -~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~ 414 (470)
.+..++.+++.++++.+.|++++ +... .+.|.|+++.++ +..++++.|.++||.+.|+. .
T Consensus 240 ~~~~~~~~~~~~r~~l~~~L~~~g------~~~~~~~~g~f~~~~~~------~~~~~~~~l~~~gi~v~~~~~f~~~~~ 307 (332)
T PRK06425 240 VAKHSLDIMENERSYLINNLEAMG------FRAAGDPSANFITFMIP------DAHDFYSYLLKNGILVRLLDDYECLGE 307 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------CEECCCCCceEEEEEcC------CHHHHHHHHHHCCeEEEECCCCCCCCC
Confidence 12456666777777777776641 3333 467888887654 35789999999999998762 4
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 415 TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 415 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+++||+ ..+.++.++++++|++++.
T Consensus 308 ~~iRis---~~~~~~~~~l~~al~~~~~ 332 (332)
T PRK06425 308 QYIRIA---IRRRSFNIKLVNALRNFLN 332 (332)
T ss_pred CEEEEE---eCCHHHHHHHHHHHHHHhC
Confidence 699999 4578899999999998763
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=211.10 Aligned_cols=319 Identities=13% Similarity=0.085 Sum_probs=206.7
Q ss_pred eecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-----CCeEEe
Q 012138 63 QAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-----YDMVLP 137 (470)
Q Consensus 63 ~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~ 137 (470)
++.|.+.+...|+..+|+..|... + ..+|.+.+++.+.+....+. .|+.....++.+.++++++ .++|++
T Consensus 7 ~~~~~~~~~~~~~~~i~l~~~~~~--~-~~p~~~~~~~~~~~~~~~~~--~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~i 81 (335)
T PRK14808 7 IAKRAYPYETEKRDRTYLALNENP--F-PFPEDLVDEVFRRLNSDTLR--IYYDSPDEELIEKILSYLDTDFLSKNNVSV 81 (335)
T ss_pred hhccCcCCCCCCCceeEecCCCCC--C-CCCHHHHHHHHHHhhhhhhh--cCCCCChHHHHHHHHHHhCCCCCCcceEEE
Confidence 345666666778899999888533 3 27889999998876532111 1222234566666666654 578999
Q ss_pred cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHH
Q 012138 138 MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 217 (470)
Q Consensus 138 ~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~ 217 (470)
|+|+++++..+++.+ . .|++.+|+|.+....+...+..... .+...+ + .++.. .
T Consensus 82 t~Ga~~~i~~~~~~~-d-------------~v~v~~P~y~~~~~~~~~~g~~~~~----v~~~~~-----~-~~~~~--~ 135 (335)
T PRK14808 82 GNGADEIIYVMMLMF-D-------------RSVFFPPTYSCYRIFAKAVGAKFLE----VPLTKD-----L-RIPEV--N 135 (335)
T ss_pred cCCHHHHHHHHHHHh-C-------------cEEECCCCHHHHHHHHHHcCCeEEE----ecCCCc-----C-CCChh--H
Confidence 999999999988754 1 4778899997665544433322111 011000 0 11111 1
Q ss_pred HHhcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeeccccc
Q 012138 218 FKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKAL 295 (470)
Q Consensus 218 l~~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l 295 (470)
+. ++++++ ++| +||||.++ +++.+++| + +++++||+||+|..|. ...... ........-+.||||.+
T Consensus 136 ~~----~~~~i~i~nP-~NPTG~~~-s~~~l~~l---~-~~~~~ii~DE~Y~~f~-~~~~~~~~~~~~~vi~~~S~SK~~ 204 (335)
T PRK14808 136 VG----EGDVVFIPNP-NNPTGHVF-EREEIERI---L-KTGAFVALDEAYYEFH-GESYVDLLKKYENLAVIRTFSKAF 204 (335)
T ss_pred cc----CCCEEEEeCC-CCCCCCCc-CHHHHHHH---H-hcCCEEEEECchhhhc-CCchHHHHHhCCCEEEEEechhhc
Confidence 21 345555 555 99999999 65555554 4 4799999999999873 111111 11121122344999999
Q ss_pred c-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 296 G-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 296 ~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+ +|+ |+||+++++++++.+.... ..++.+.+++.++.++++..+. ++..+.+++..+++.+.|+++ .+.
T Consensus 205 ~l~Gl-RvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------g~~ 275 (335)
T PRK14808 205 SLAAQ-RIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM------GYR 275 (335)
T ss_pred cCccc-ceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC------CCE
Confidence 9 899 9999999999998886433 3466778888888777763221 223344445555566666553 234
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
...+.|.|+++.+... +..++.++|.++||++... .+++|++ ..+.++.+++++.|+++
T Consensus 276 ~~~~~g~f~~~~l~~~----~~~~~~~~l~~~Gi~V~~~-~~~~Ris---i~~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 276 ITDSRGNFVFIFMEKE----EKERLLEHLRAKNIAVRSF-REGVRIT---IGKREENDMILKELEVF 334 (335)
T ss_pred ECCCCCeEEEEeCCCc----cHHHHHHHHHHCCeEEEEC-CCCeEEe---cCCHHHHHHHHHHHHhh
Confidence 4467888988876532 4578999999999999865 4789999 46788999999998753
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=209.39 Aligned_cols=329 Identities=14% Similarity=0.173 Sum_probs=215.7
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-------CCcHHHHHHHHhhhhCC---CeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-------NDKFPVFAERLTSMFGY---DMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~---~~v~~~~sGte 143 (470)
+..|+|..+. |..++.+.+++.+.++.....+.... .+..+++.+.++++++. +.|++|+|+++
T Consensus 16 ~~iyld~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAAT------ALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHH
Confidence 4567776544 23568899999888764322211111 12345677888888864 47999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
++..++..+... ...+|+ .||+.++.|++...... ...+.... +.+...+ ..+ |++++++++++
T Consensus 90 ~l~~~~~~~~~~-----~~~~gd-~Vl~~~~~~~s~~~~~~~~~~~~g~~v~---~v~~~~~-~~~---~~~~l~~~i~~ 156 (398)
T TIGR03392 90 SINLVAQSYARP-----RLQPGD-EIIVSEAEHHANLIPWLMVAQQTGAKVV---KLPIGAD-LLP---DIRQLPELLTP 156 (398)
T ss_pred HHHHHHHHhhhc-----cCCCCC-EEEECCcchhHHHHHHHHHHHHcCcEEE---EEecCCC-CCc---CHHHHHHHhcc
Confidence 999998865310 001455 78888888665321111 11111110 1111111 111 78999998875
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCC
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGG 298 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG 298 (470)
++++|++..++||+|.+.| +++|.++|++||+++|+|++|+ ++.. ..... ...+|+.++| |.+++
T Consensus 157 ---~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~gp- 223 (398)
T TIGR03392 157 ---RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG--PPDVQ--ALDIDFYAFSGHKLYGP- 223 (398)
T ss_pred ---CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC--CCChh--hcCCCEEEEecccccCC-
Confidence 7888887778999999998 9999999999999999999997 2111 11122 2345887777 96653
Q ss_pred CcceeEEEecHHHHhhcCcCCccC------------------CC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGS------------------TF---GGNPLASAVAIASLDVIRD---EKLAERSAHLG 354 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~------------------t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~ 354 (470)
. ++|++++++++++.+.+...+. .| +.+..+.+++.++++.+.+ +.+.++.+++.
T Consensus 224 ~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~ 302 (398)
T TIGR03392 224 T-GIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLA 302 (398)
T ss_pred C-ceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3 6899999999887775432111 11 3566677788888887755 34556666666
Q ss_pred HHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEec
Q 012138 355 EELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTP 421 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~ 421 (470)
+++.+.|.++ | .+... ...+.++.+.+.. .+..++.+.|.++||.+.++. .+++|+++
T Consensus 303 ~~l~~~l~~l----~-g~~~~~~~~~~i~~~~~~~----~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~ 373 (398)
T TIGR03392 303 DLAEERLAQL----P-GFRSFRCPGSSLLAFDFAG----VHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASF 373 (398)
T ss_pred HHHHHHHhcC----C-CeEEeCCCCCcEEEEEeCC----cCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEe
Confidence 6666666553 2 22222 2334556655542 256789999999999997653 46899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 422 PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
...+|++|++++++.|+++++ ++
T Consensus 374 ~~~~t~~ei~~l~~~l~~~~~-~~ 396 (398)
T TIGR03392 374 APYNTQQDVDALVDAVGAALE-LL 396 (398)
T ss_pred eccCCHHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999887 54
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=211.45 Aligned_cols=340 Identities=14% Similarity=0.094 Sum_probs=208.7
Q ss_pred CCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccC-CCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~~ 146 (470)
.|+.++||..|... +++ ..++++.+++.+.+.....++ .....++++.+++++.... ..++|++++|+++++.
T Consensus 31 ~~~~~i~l~~g~p~-~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~ 109 (404)
T PRK09265 31 EGHKILKLNIGNPA-PFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV 109 (404)
T ss_pred cCCCeEEecCCCCC-cCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence 45677888876442 223 257788888887665422111 1112334555555554321 2467999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++.+++|..........+..... . +... +...+ |++++++.++. ++
T Consensus 110 ~~~~~~~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~v~-~---~~~~~~~~~~---d~~~l~~~~~~---~~ 169 (404)
T PRK09265 110 MAMQALLN---------NGD-EVLVPAPDYPLWTAAVSLSGGKPVH-Y---LCDEEAGWFP---DLDDIRSKITP---RT 169 (404)
T ss_pred HHHHHhCC---------CCC-EEEEeCCCCcChHHHHHHcCCEEEE-E---ecccccCCCC---CHHHHHHhccc---cc
Confidence 99887644 455 7888899986544333222221110 0 0000 01112 78999988865 67
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC-C-C-Ccceeecccccc-CCC
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE-E-V-RPDMVILGKALG-GGV 299 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~-~-~-~pdi~s~sK~l~-gG~ 299 (470)
++|+ ++| +||||.++ +.+.+++|.++|++||++||+||+|.+|.+.+.. ...... . . ..-+-+|||.++ +|+
T Consensus 170 ~~v~l~~P-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGl 247 (404)
T PRK09265 170 KAIVIINP-NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGF 247 (404)
T ss_pred eEEEEECC-CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCccc
Confidence 7666 555 99999999 8999999999999999999999999987554422 111111 1 0 112347899995 898
Q ss_pred cceeEEEe--cHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHH---HHHHHHHHHHHHHHHHHHhhCC
Q 012138 300 IPVSAVLA--DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLA---ERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 300 ~~ig~v~~--~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~---~~~~~~~~~l~~~L~~l~~~~p 369 (470)
|+||+++ +++ +++.+... ...+++.+.+++.++.++|...+. ..+. +++++.++.+.+.|++ +|
T Consensus 248 -RiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~----~~ 321 (404)
T PRK09265 248 -RVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA----IP 321 (404)
T ss_pred -ceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 9999995 343 33333211 123456777888888777742211 1122 2344444555555543 33
Q ss_pred CceEEEeccceeEEE-EeccCCC--chhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGRGLFNAV-EFDKTAL--PVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~-~~~~~~~--~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+....+.|.++.| .++.... ..+...+.+.|.++||.+.|+. .+++|++. ..++|++++++++|.++
T Consensus 322 -~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~e~l~~~l~rl~~~ 398 (404)
T PRK09265 322 -GVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRVDDLEEAIGRIGRF 398 (404)
T ss_pred -CCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCHHHHHHHHHHHHHH
Confidence 34444555554444 5543110 0134456777888899998762 57999995 57899999999999999
Q ss_pred Hhccc
Q 012138 441 LELDL 445 (470)
Q Consensus 441 l~~~~ 445 (470)
++ ..
T Consensus 399 l~-~~ 402 (404)
T PRK09265 399 LS-GY 402 (404)
T ss_pred HH-Hh
Confidence 87 54
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-24 Score=217.86 Aligned_cols=326 Identities=11% Similarity=0.100 Sum_probs=211.6
Q ss_pred CHHHHHHHHHHHHHcc------ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHHHhchhcccC
Q 012138 93 HPKIMKALQEQAEKLT------LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKF 162 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~ 162 (470)
+.++++.+.+.+.... ++......++++.+++++.+..| .++|++|+|+++|+..+++++...
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~------- 214 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------- 214 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccC-------
Confidence 3466666666665421 11122234567777777766544 478999999999999999987531
Q ss_pred CCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcC---CCeEEEE-EccccCCC
Q 012138 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESG---DQIAGFL-FEPIQGEA 237 (470)
Q Consensus 163 ~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~---~~~~~vi-~epi~n~~ 237 (470)
+|+ .|++..|+|.+........+..... .++.++ .+.+ |+++|++++++.. .++++++ ++| +|||
T Consensus 215 -~gd-~Vli~~P~Y~~y~~~~~~~g~~~v~----~~l~~~~~~~~---d~~~Le~~l~~~~~~~~~~k~ivl~nP-~NPT 284 (534)
T PLN02231 215 -EKD-GILCPIPQYPLYSASIALHGGTLVP----YYLDEATGWGL---EISELKKQLEDARSKGITVRALVVINP-GNPT 284 (534)
T ss_pred -CCC-EEEEeCCCChhHHHHHHHcCCEEEE----EecCcccCCCC---CHHHHHHHHHHHhhcCCCeEEEEEeCC-CCCC
Confidence 344 8889999997665444333322111 011111 1223 8999999987531 2567655 666 9999
Q ss_pred ccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc-CCcc-ccccC----CC---Cccee---ecccccc--CCCccee
Q 012138 238 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS-GRML-ASDWE----EV---RPDMV---ILGKALG--GGVIPVS 303 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~-G~~~-~~~~~----~~---~pdi~---s~sK~l~--gG~~~ig 303 (470)
|.++ +.+.+++|+++|++||++||+||+|..+.+. +..+ .+... +. ...++ +|||.+. +|+ |+|
T Consensus 285 G~vl-s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGl-RiG 362 (534)
T PLN02231 285 GQVL-AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGK-RGG 362 (534)
T ss_pred CcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCcc-ceE
Confidence 9999 9999999999999999999999999987653 3221 21111 11 11233 8899874 699 999
Q ss_pred EEEe---cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH-------HHh----h-hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 304 AVLA---DKEVMLCIQPGEHGSTFGGNPLASAVAIASLD-------VIR----D-EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 304 ~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~-------~~~----~-~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
|+++ ++++++.+..... ...+.+.++++++..+++ .+. + +.+++.++++.+.+.+.|+++
T Consensus 363 y~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~---- 437 (534)
T PLN02231 363 YMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL---- 437 (534)
T ss_pred EEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 9986 6888887754322 234456666776666553 111 1 234556666777777766653
Q ss_pred CCceEEEeccceeEEE-EeccCCC---------chhHHHHHHHHHH-cCceeccCC-------CCEEEEecCCCCCHHHH
Q 012138 369 PNYVKEVRGRGLFNAV-EFDKTAL---------PVSAYDICLKMKE-RGILAKPTH-------DTIVRLTPPLSISSNEL 430 (470)
Q Consensus 369 p~~~~~~~~~g~~~~~-~~~~~~~---------~~~~~~~~~~l~~-~Gv~~~~~~-------~~~iR~~~~~~~t~e~i 430 (470)
+ .+....+.|.|+.| .+..+.. ......++.+|++ .||.+.|+. ..++|++ +..+++++
T Consensus 438 ~-gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l 514 (534)
T PLN02231 438 E-GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKI 514 (534)
T ss_pred C-CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHH
Confidence 2 46666788888888 2221110 0013346676664 599999873 3469999 56899999
Q ss_pred HHHHHHHHHHHhcccC
Q 012138 431 QEGSKALHDVLELDLP 446 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~ 446 (470)
++++++|.++++ ++.
T Consensus 515 ~eal~RL~~~~~-~~~ 529 (534)
T PLN02231 515 PAIVSRLTEFHK-SFM 529 (534)
T ss_pred HHHHHHHHHHHH-HHH
Confidence 999999999987 654
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-24 Score=214.40 Aligned_cols=320 Identities=16% Similarity=0.118 Sum_probs=207.5
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHcc--ccC-----CCCCCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHH
Q 012138 83 AYSAVNQGHCHPKIMKALQEQAEKLT--LSS-----RAFYNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 83 ~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~-----~~~~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~ 153 (470)
+.+....||++|++++++..++ ... +.+ .....+++.++++++++++|.+ .++++++|+++.+.++.+++
T Consensus 24 ~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~ 102 (398)
T cd00613 24 FLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAI 102 (398)
T ss_pred cccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHH
Confidence 3344457899999998877666 221 111 1112345788999999998865 78788877777677766554
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEE
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGF 228 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~v 228 (470)
.. . + +++ .|++.++ +|+.+...+...+...- ..+..++++ |++++++++.+ ++++|
T Consensus 103 ~~--~--~--~gd-~Vl~~~~-~h~~~~~~~~~~~~~~g--------~~~~~v~~~~~~~~d~~~l~~~i~~---~t~~v 163 (398)
T cd00613 103 RA--Y--H--KRN-KVLVPDS-AHPTNPAVARTRGEPLG--------IEVVEVPSDEGGTVDLEALKEEVSE---EVAAL 163 (398)
T ss_pred hc--c--c--CCC-EEEEcCc-cCcchHHHHHHhcccCC--------cEEEEeccCCCCCcCHHHHHHhcCC---CeEEE
Confidence 31 0 0 133 5555544 68887766655442100 011222221 78999988865 79999
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--ecccccc----CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALG----GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~----gG~~~i 302 (470)
+++++ +++|.+.+ ++++|.++|++||+++|+|++|+.....+. ...+ .+|++ +++|.+. ||. ++
T Consensus 164 iv~~~-~~~G~~~~---~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~--~~d~~~~s~~K~~~p~g~Ggp-~~ 233 (398)
T cd00613 164 MVQYP-NTLGVFED---LIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEY--GADIVVGNLQKTGVPHGGGGP-GA 233 (398)
T ss_pred EEECC-CCCceecc---hHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHc--CCCEEEeeccccCCCCCCCCC-ce
Confidence 99885 58998853 469999999999999999999863211111 1122 35765 5678763 366 88
Q ss_pred eEEEecHHHHhhcCcC-----------------------------CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHH
Q 012138 303 SAVLADKEVMLCIQPG-----------------------------EHGSTFGGNPLASAVAIASLDVIRD---EKLAERS 350 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~ 350 (470)
|+++.++++++.+.+. ...++++++++.++++.++++.+.+ +++.++.
T Consensus 234 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~ 313 (398)
T cd00613 234 GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERA 313 (398)
T ss_pred eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999998888765321 1123455667777777777776654 3466888
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---CCCEEEEecCCCCCH
Q 012138 351 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISS 427 (470)
Q Consensus 351 ~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~iR~~~~~~~t~ 427 (470)
+++++++++.|+++....+ .. ......+.+.+.... +.++.++++.|.++||.+... ..+.+|++|++.+|+
T Consensus 314 ~~~~~~l~~~L~~~~~~~~--~~--~~~~~~v~~~~~~~~-~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~ 388 (398)
T cd00613 314 HLNANYLAKRLKEVGGVLP--FN--GPFFHEFVLRLPPLY-GIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETK 388 (398)
T ss_pred HHHHHHHHHHHHhcCCccc--CC--CCeeEEEEEEcCCcc-hHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCH
Confidence 8999999999988642210 00 011112233333210 136788999999999987653 568999999999999
Q ss_pred HHHHHHHHHH
Q 012138 428 NELQEGSKAL 437 (470)
Q Consensus 428 e~i~~~~~~l 437 (470)
|||+++++.|
T Consensus 389 edid~~~~~L 398 (398)
T cd00613 389 EELDALLEAL 398 (398)
T ss_pred HHHHHHHHhC
Confidence 9999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=209.11 Aligned_cols=291 Identities=14% Similarity=0.098 Sum_probs=192.7
Q ss_pred CcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+...++.+.+++++|.+.+++++||++++..++..+.. +++ .|++..+.+ ......+...+..
T Consensus 51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~---------~gd-~Vl~~~~~h-~s~~~~~~~~g~~------ 113 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCK---------EGD-WVVLDGLAH-YTSYVAAERAGLN------ 113 (370)
T ss_pred hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhC---------CCC-EEEECCccc-HHHHHHHHHcCCE------
Confidence 35677888899999999999999999999999887754 455 676666663 3333333333221
Q ss_pred CCCCCCeeeecCC-------CHHHHHHHHHhc----CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 197 GPLLPGHLKVDFG-------DITALEKIFKES----GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 197 ~~~~~~~~~~~~~-------d~~~Le~~l~~~----~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
+..++++ |+++|++++++. ..++++|+++.++|++|.+.| +++|.++|++||+++|+||
T Consensus 114 ------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDe 183 (370)
T TIGR02539 114 ------VKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNC 183 (370)
T ss_pred ------EEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEEC
Confidence 2334443 899999998642 125678887767999999998 9999999999999999999
Q ss_pred cccCCcccCCccccccCCCCcce--eeccccccCCCcceeEEEecHHHHhhcCcCCccCCC--------CCCHHHHHHHH
Q 012138 266 IQSGLARSGRMLASDWEEVRPDM--VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF--------GGNPLASAVAI 335 (470)
Q Consensus 266 v~~g~g~~G~~~~~~~~~~~pdi--~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~--------~~~~~~~aaa~ 335 (470)
+|+. |..+.. ...+ .+|+ .+++|++++|. |+|++++++++++.+........+ +....+++++.
T Consensus 184 a~~~-g~~~~~--~~~~--~~di~v~s~sK~~~~~g-~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (370)
T TIGR02539 184 AYTV-GRMPVS--AKEI--GADFIVGSGHKSMAASG-PCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMM 257 (370)
T ss_pred cccc-CCcCCC--HHHc--CCCEEEeeCcccccCCC-CEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHH
Confidence 9982 211111 1112 2354 48999999766 999999999999988754321111 11112455555
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-----CchhHHHHHHHHHHcCce-
Q 012138 336 ASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGIL- 408 (470)
Q Consensus 336 a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~- 408 (470)
++++...+ -....+..++.+++++.|++++-. .+....+...++.+.++... .......+.+.|+++||.
T Consensus 258 ~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ 334 (370)
T TIGR02539 258 ASFPHVVERVKRWDEEVKKTRWFVAELEDIGFI---QLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHG 334 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcc
Confidence 56654322 111222233356788888775321 11112345556666543110 001345789999999998
Q ss_pred eccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 409 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 409 ~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.++.++++|++. ..++++++++++++|+++++ ++
T Consensus 335 ir~~~~~~iRis~-~~~t~e~i~~l~~~L~~~~~-~~ 369 (370)
T TIGR02539 335 IRSGQTKYFKLSV-YGLTKEQVEYVVDSFEEIVE-EY 369 (370)
T ss_pred ccCCcceEEEEEe-cCCCHHHHHHHHHHHHHHHH-hc
Confidence 7776667999997 36899999999999999987 64
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=210.67 Aligned_cols=322 Identities=20% Similarity=0.198 Sum_probs=209.8
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~ 151 (470)
+..++||..+... ++ .++.+.+++.+....... |....-.++.+.++++++. ++|++|+|+++++..++++
T Consensus 35 ~~~~i~l~~~~~~--~~-~~~~~~~al~~~~~~~~~----Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 107 (371)
T PRK05166 35 VPRIAKLGSNENP--LG-PSPAVRRAFADIAELLRL----YPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRA 107 (371)
T ss_pred CcceEEcCCCCCC--CC-CCHHHHHHHHHHHHHhhc----CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence 3468899888543 44 678888888775544322 2222224677888887764 5799999999999988887
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
+.+ +|+ .|++..|+|.+........+. ... ..+...+ ..+ |++++++.+++ ++++|++.
T Consensus 108 ~~~---------~gd-~vli~~P~y~~~~~~~~~~g~-~~~---~v~~~~~-~~~---~~~~l~~~~~~---~~~~v~l~ 166 (371)
T PRK05166 108 VLR---------PGD-RVVTLYPSFPLHEDYPTMMGA-RVE---RVTVTPD-LGF---DLDALCAAVAR---APRMLMFS 166 (371)
T ss_pred hcC---------CCC-EEEEcCCChHHHHHHHHHcCC-eEE---EeecCCC-CCC---CHHHHHHhhhc---CCCEEEEe
Confidence 654 455 777888998654322221111 110 0111000 112 78999988875 55666654
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccC-CCCc---ceeecccccc-CCCcceeEE
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWE-EVRP---DMVILGKALG-GGVIPVSAV 305 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~-~~~p---di~s~sK~l~-gG~~~ig~v 305 (470)
.++||||.++ +.+.+++|.++|++ ++++|+||+|..|...+.... .... ...+ -+.||||.++ +|+ |+||+
T Consensus 167 ~p~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~Gl-RiG~~ 243 (371)
T PRK05166 167 NPSNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGL-RVGYG 243 (371)
T ss_pred CCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchh-heeee
Confidence 4599999999 88889999998875 889999999997753322111 1111 1111 2348999999 998 99997
Q ss_pred Ee-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 306 LA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 306 ~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
++ ++++++.+.... ..++.+.+++.++.+++..-.. ++..+.++++++++.+.|++. + +...++.|.|++
T Consensus 244 i~~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----g--~~~~p~~g~fl~ 315 (371)
T PRK05166 244 LVSDPELVGLLDRVR--TPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM----G--YRIAPSRANFLF 315 (371)
T ss_pred ecCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----c--CeeCCCcCCEEE
Confidence 75 788887775322 3456788888777776642111 233445555566666666653 1 233455677766
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+. . +..++++.|.++||.+.|+. .+++||++ .+.++.+++++.|++++.
T Consensus 316 ~~~~--~---~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~---~~~~~~~~l~~~l~~i~~ 370 (371)
T PRK05166 316 FDAR--R---PASAVAEALLRQGVIVKPWKQPGFETFIRVSI---GSPEENDHFVAALDKVLE 370 (371)
T ss_pred EeCC--C---CHHHHHHHHHHCCeEEecCCCCCCCCeEEEEc---CCHHHHHHHHHHHHHHhh
Confidence 5432 2 46789999999999998763 67899994 367778888888887654
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=213.65 Aligned_cols=336 Identities=12% Similarity=0.044 Sum_probs=206.5
Q ss_pred eEEeccCCcccccCCCCC--HHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhh----CCCeE--EecCChhHH
Q 012138 76 KYLDFLSAYSAVNQGHCH--PKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMF----GYDMV--LPMNTGAEG 144 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~----~~~~v--~~~~sGteA 144 (470)
..|||..|....+.++.+ +.+.+++.+.++.. .+.+.....++++.+++++.+.. ..+++ ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 457888886543433333 67778877766432 12222334456677777765543 24566 999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+..+++++... .+|+ .|++.+|+|.+........+..... .+. .++...+ |+++++++++++..
T Consensus 107 l~~~~~~l~~~-------~pGd-~Vlv~~P~y~~~~~~~~~~g~~~v~----v~~~~~~~~~~---d~~~l~~~~~~~~~ 171 (396)
T PRK09257 107 LRVGADFLKRA-------FPDA-KVWVSDPTWPNHRAIFEAAGLEVKT----YPYYDAATKGL---DFDAMLADLSQAPA 171 (396)
T ss_pred HHHHHHHHHHh-------CCCC-eEEECCCCcccHHHHHHHcCCcEEE----EeccccccCcc---CHHHHHHHHHhCCC
Confidence 99998755321 0455 8999999997765544433332111 011 0111122 88999998875433
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc-CC-cc---ccccC-CCCcceeecccccc-
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS-GR-ML---ASDWE-EVRPDMVILGKALG- 296 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~-G~-~~---~~~~~-~~~pdi~s~sK~l~- 296 (470)
+++++++...|||||.++ +.+.+++|.++|++||+++|+||+|.+|... +. .. .+... ....-+.||||.++
T Consensus 172 ~~~~~i~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~ 250 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGL 250 (396)
T ss_pred CCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcc
Confidence 445555455699999999 9999999999999999999999999987643 11 11 11111 11123459999999
Q ss_pred CCCcceeEEEe---cHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLA---DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 297 gG~~~ig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~~~l~~~L 361 (470)
+|+ |+||+++ +++ ++..+.........+.+.+.+.++...++.- .+ +.++++++++++.+.+.|
T Consensus 251 ~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L 329 (396)
T PRK09257 251 YGE-RVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEAL 329 (396)
T ss_pred ccc-cceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599 9999973 433 3333322222223335677766666555421 11 234556666666666666
Q ss_pred HHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+++... ..+....+.|.|+.| +.. +...+.+.+.++||.+.|.+ ||+++ ..++++|++++++|++++
T Consensus 330 ~~~~~~--~~~~~~~p~gg~~~w-~~l-----~~~~~~~l~~~~~V~~~p~~----ri~~~-~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 330 KAKGPS--RDFDFIARQRGMFSY-SGL-----TPEQVDRLREEFGVYAVGSG----RINVA-GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred HhcCCC--CCcccccccceEEEe-cCC-----CHHHHHHHHHcCCEEEcCCC----eEEEe-eCCHHHHHHHHHHHHhhC
Confidence 654210 013344567777776 332 22334444456699988752 88843 389999999999998764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=207.09 Aligned_cols=305 Identities=16% Similarity=0.142 Sum_probs=202.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~ 151 (470)
..++||.++. +++|.+.+.+.. ..+.. |+.+. .+|.+.++++++. ++|++++|+++++..+..
T Consensus 24 ~~~i~ls~Ne--np~~~~~~~~~~---~~~~~-------Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~- 89 (339)
T PRK06959 24 DAWLDLSTGI--NPHGYPVPPVPA---DAWRR-------LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA- 89 (339)
T ss_pred hhhceeccCC--CCCCCCCCCCCH---HHHHh-------CCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-
Confidence 4578999887 456655333221 12221 33333 7899999998864 579999999999976543
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe-EEEEE
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI-AGFLF 230 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~-~~vi~ 230 (470)
+.. ++ .|++..|+|.+........+.. +..++.++ +. +.+ .+ .++++
T Consensus 90 ~~~---------~g--~v~v~~P~y~~y~~~~~~~g~~-------------~~~v~~~~-~~----~~~---~~~~v~l~ 137 (339)
T PRK06959 90 LLP---------RG--RVGIAPLAYSEYAPAFARHGHR-------------VVPLDEAA-DT----LPA---ALTHLIVV 137 (339)
T ss_pred hcC---------CC--eEEEcCCCcHHHHHHHHHCCCE-------------EEeecccc-hh----ccc---cCCEEEEe
Confidence 222 33 3677889987654443322211 12332222 22 221 22 45668
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecH
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
+| +||||.++ +.+.+++|.+.|+++++++|+||+|..|.............-..-+.||||.++ +|+ |+||+++++
T Consensus 138 nP-nNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~Gl-RiGy~v~~~ 214 (339)
T PRK06959 138 NP-NNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGV-RAGFVLAAP 214 (339)
T ss_pred CC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcch-heEEEecCH
Confidence 88 99999999 888999999999999999999999998743211111111110112349999998 999 999999999
Q ss_pred HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc
Q 012138 310 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388 (470)
Q Consensus 310 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~ 388 (470)
++++.+.... ..|+.+.++++++.++|+.-. .+..++.+++.++++.+.|++++ +.. .+.+.|+++.+.
T Consensus 215 ~li~~l~~~~--~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g------~~~-~~~~~f~~~~~~- 284 (339)
T PRK06959 215 ALLAALRDAL--GAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHG------FAV-HATPLFSWTDDP- 284 (339)
T ss_pred HHHHHHHHhc--CCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC------CCc-cCcceEEEEeCC-
Confidence 9999886543 356678888888888875311 13456667777777777777652 111 234555555432
Q ss_pred CCCchhHHHHHHHHHHcCceeccC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 389 TALPVSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+..++.+.|.++||++... ..+++|++ +..+++++++++++|+++++ .+.
T Consensus 285 -----~~~~l~~~l~~~GI~vr~~~~~~~lRis--i~~~~~e~~~l~~al~~~~~-~~~ 335 (339)
T PRK06959 285 -----RAAALHAALARRGIWTRYFAPPPSVRFG--LPADEAEWQRLEDALAECVP-TLA 335 (339)
T ss_pred -----CHHHHHHHHHhCCeEEEECCCCCeEEEE--CCCCHHHHHHHHHHHHHHHH-HHh
Confidence 3568999999999999764 35789999 44688899999999999887 553
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=206.98 Aligned_cols=329 Identities=15% Similarity=0.136 Sum_probs=206.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHh
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKW 155 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~ 155 (470)
+++||.++.+. .++|.+.+++.+. ..... ..++.+...++++.++++++.+.++++++|++++..++......
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~ 78 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD-VLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDV 78 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhc--cCCCc-ccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccC
Confidence 46788888655 2578888888654 11111 12345567899999999999888899999999988777765320
Q ss_pred chhcccCCCCCcEEEEEccCccccccc--hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC----CCeEEEE
Q 012138 156 GYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG----DQIAGFL 229 (470)
Q Consensus 156 ~~~~~~~~~g~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~----~~~~~vi 229 (470)
+|+ .|++.+++|...... .....+. +..+.+..++ ..+ |+++++++++++. +++++|+
T Consensus 79 --------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~-~~~---d~~~l~~~i~~~~~~~~~~~~~v~ 142 (353)
T PLN02721 79 --------RGS-EVILGDNSHIHLYENGGISTLGGV---HPRTVKNNED-GTM---DLDAIEAAIRPKGDDHFPTTRLIC 142 (353)
T ss_pred --------CCC-eEEEcCccceehhcccchhhhcCc---eeEecCCCcC-CCc---CHHHHHHHHHhccCCCCCcceEEE
Confidence 344 677777775321111 1111111 1000111111 112 8999999997421 2678888
Q ss_pred Ecc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc---cCCccccccCCCCcc--eeeccccccCCCccee
Q 012138 230 FEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR---SGRMLASDWEEVRPD--MVILGKALGGGVIPVS 303 (470)
Q Consensus 230 ~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~---~G~~~~~~~~~~~pd--i~s~sK~l~gG~~~ig 303 (470)
+++ .+||+|.++ +.+++++|.++|++||++||+||+|. ++. .+.. ........| +++++|++++ ++|
T Consensus 143 l~~~~~np~G~~~-~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G 215 (353)
T PLN02721 143 LENTHANCGGRCL-SVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVP--VHRLVKAADSVSVCLSKGLGA---PVG 215 (353)
T ss_pred EeccccccCCccc-cHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCC--HHHHhhhCCEEEEecccccCC---cee
Confidence 766 467899998 89999999999999999999999986 221 1111 110000123 4588999874 556
Q ss_pred E-EEecHHHHhhcCcCCccCCCCCC--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE--EEecc
Q 012138 304 A-VLADKEVMLCIQPGEHGSTFGGN--PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGR 378 (470)
Q Consensus 304 ~-v~~~~~~~~~~~~~~~~~t~~~~--~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~--~~~~~ 378 (470)
+ +++++++++.+.........+.+ ...++++..+++...+ ..++..++.+++.+.|+++. .+. ...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~ 288 (353)
T PLN02721 216 SVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVP--KLEDDHKKAKLLAEGLNQIK-----GLRVNVAAVE 288 (353)
T ss_pred eEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCC-----CcEEecCCcc
Confidence 5 66888887765432111111111 2223333334432211 22333455667777776541 221 22345
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.++++.+.... ..+...++++|.++||.+.++..+++|+++++.++++|+++++++|++++.
T Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 289 TNIVYFDITDGS-RITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred ceEEEEEccCCc-cccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 667666664320 125778999999999999999889999999989999999999999999876
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=192.50 Aligned_cols=339 Identities=15% Similarity=0.146 Sum_probs=222.1
Q ss_pred CeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHcccc---CCCCCCCcHHHHHHHHhhhh----CCCeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLS---SRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~----~~~~v~~~~sGteA~~ 146 (470)
+.+|-+..|-++. +-....++..+|+.++++..... +.......++++++.+.+-. ..+.|++|+|.++|++
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 4666666653322 12225678899999999875432 22233445677777765544 3578999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.++.++.+ ||. .|+...|+|.-....+....- ...+-.++| ..+.+ |++.+|.++++ +|
T Consensus 141 ~~i~~LA~---------p~a-NILlPrPGfp~Y~~~a~~~~l----EVR~ydlLPe~~weI---DL~~veal~DE---NT 200 (447)
T KOG0259|consen 141 LAISSLAN---------PGA-NILLPRPGFPLYDTRAIYSGL----EVRYYDLLPEKDWEI---DLDGVEALADE---NT 200 (447)
T ss_pred HHHHHhcC---------CCC-ceecCCCCCchHHHhhhhcCc----eeEeecccCccccee---chHHHHHhhcc---Ce
Confidence 99998765 444 888899998543332222111 111112233 35666 99999999998 66
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC-CCCccee--ecccc-ccCCC
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE-EVRPDMV--ILGKA-LGGGV 299 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~-~~~pdi~--s~sK~-l~gG~ 299 (470)
.+++ +|| +||.|.++ +.+-|++|+++|+|+|+++|.||||..+.+.+..| ....+ .+.|-+. .+||. +-+||
T Consensus 201 ~AivviNP-~NPcGnVy-s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGW 278 (447)
T KOG0259|consen 201 VAIVVINP-NNPCGNVY-SEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGW 278 (447)
T ss_pred eEEEEeCC-CCCCcccc-cHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCc
Confidence 6555 666 99999999 99999999999999999999999999766666554 22222 3344333 66785 45999
Q ss_pred cceeEEEecHH--------HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 300 IPVSAVLADKE--------VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 300 ~~ig~v~~~~~--------~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
|+||++..+. +.+.+... ..-+-+++.+.++|.-..|+.-.+ +.-..-++.+.+.-.+.|.++
T Consensus 279 -RlGWi~~hD~~gvf~~~~~~q~~~~~-~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~I---- 352 (447)
T KOG0259|consen 279 -RLGWIALHDPRGVFRDTKVVQGIKNF-LDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDI---- 352 (447)
T ss_pred -eeeeEEEecccccccchHHHHHHHHH-HhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcC----
Confidence 9999996431 11222211 122334555666665555543222 222333445555555555553
Q ss_pred CCceE-EEeccceeEEEEeccCCC----chhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 369 PNYVK-EVRGRGLFNAVEFDKTAL----PVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 369 p~~~~-~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
| .+. .+++.|.++.| +..+-+ -.+..+||.+|. |+.+++.|+. +|++|++ +....+.+++++++|+
T Consensus 353 P-~l~cp~kPeg~mylm-v~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik 428 (447)
T KOG0259|consen 353 P-CLTCPVKPEGCMYLM-VKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIK 428 (447)
T ss_pred C-CcccCcCCCcceEEE-eccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHH
Confidence 3 344 67889988887 332211 135567888875 5599998873 8999999 7889999999999999
Q ss_pred HHHhcccC
Q 012138 439 DVLELDLP 446 (470)
Q Consensus 439 ~~l~~~~~ 446 (470)
++.. +..
T Consensus 429 ~Fc~-RH~ 435 (447)
T KOG0259|consen 429 EFCD-RHS 435 (447)
T ss_pred HHHH-hhh
Confidence 9998 654
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=213.31 Aligned_cols=336 Identities=10% Similarity=0.069 Sum_probs=208.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHc-------cccCCCCCCCcHHHHHHHHhhhh----CCCeEE--ecCCh
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-------TLSSRAFYNDKFPVFAERLTSMF----GYDMVL--PMNTG 141 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~----~~~~v~--~~~sG 141 (470)
...+|+..|...... .++.+.+++.+++... .+.+..+..++++.+++++.+.. ..++|+ .|++|
T Consensus 29 ~~~i~l~~g~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~ 106 (404)
T PTZ00376 29 PSKVNLGIGAYRDEN--GKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG 106 (404)
T ss_pred cccEecccceeECCC--CCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence 355788877432111 2333344454443221 11122233455666777665433 345777 48899
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHh
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~ 220 (470)
++|+..++.++... .. +|+ .|++.+|+|++........+..... .+... +...+ |++.+++++++
T Consensus 107 ~~al~~~~~~l~~~--~~----~Gd-~Vlv~~P~y~~~~~~~~~~G~~~~~----v~l~~~~~~~~---d~~~l~~~~~~ 172 (404)
T PTZ00376 107 TGALRLGFEFLKRF--LP----AGT-TVYVSNPTWPNHVNIFKSAGLNVKE----YRYYDPKTKGL---DFDGMLEDLRT 172 (404)
T ss_pred chHHHHHHHHHHHh--cC----CCC-EEEEcCCCchhHHHHHHHcCCceee----ccccCcccCCc---CHHHHHHHHHh
Confidence 99998887654321 11 455 8999999998775544433332111 11100 11222 78999999875
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---c---cccccCC-CCcceeeccc
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---M---LASDWEE-VRPDMVILGK 293 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~---~~~~~~~-~~pdi~s~sK 293 (470)
...+++++++..+|||||.++ +++.+++|.++|++||++||+||+|.+|.+.+. . ..+.... ...-+.||||
T Consensus 173 ~~~~~~~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK 251 (404)
T PTZ00376 173 APNGSVVLLHACAHNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSK 251 (404)
T ss_pred CCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCC
Confidence 433456666555599999999 999999999999999999999999998765431 1 1111111 1123459999
Q ss_pred ccc-CCCcceeEE---EecHHHHhhcCcC---CccCCC-CCCHHHHHHHHHHHHHHh---h-----hhHHHHHHHHHHHH
Q 012138 294 ALG-GGVIPVSAV---LADKEVMLCIQPG---EHGSTF-GGNPLASAVAIASLDVIR---D-----EKLAERSAHLGEEL 357 (470)
Q Consensus 294 ~l~-gG~~~ig~v---~~~~~~~~~~~~~---~~~~t~-~~~~~~~aaa~a~l~~~~---~-----~~~~~~~~~~~~~l 357 (470)
.++ +|+ |+||+ ++++++++.+... ....++ +.+.+++.++..+|+.-. + ...+++++++++.+
T Consensus 252 ~~~~~Gl-RvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 330 (404)
T PTZ00376 252 NMGLYGE-RIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLL 330 (404)
T ss_pred ccccccc-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999 99998 5687655443211 112333 346677777777664211 0 22344566677777
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCCCCEEEEecCCCCCHHHHHHHHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTHDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
.+.|+++... ..+....+.|.|+.| +.. ..+++++|.++ ||.+.|++ |++.+. .+.+++++++++
T Consensus 331 ~~~L~~~~~~--~~~~~~~p~gg~f~~-~~~------~~~~~~~L~~~~~v~v~p~~----Ris~~~-~~~~~~~~~~~~ 396 (404)
T PTZ00376 331 YDELKALGSP--GDWEHIINQIGMFSF-TGL------TKEQVERLIEKYHIYLLDNG----RISVAG-LTSKNVDYVAEA 396 (404)
T ss_pred HHHHHhcCCC--CcccccccCceEEEe-cCC------CHHHHHHHHHhCCEeecCCC----eEEEec-cCHHhHHHHHHH
Confidence 7777665211 113334567777777 332 24688888888 99998873 998432 799999999999
Q ss_pred HHHHHh
Q 012138 437 LHDVLE 442 (470)
Q Consensus 437 l~~~l~ 442 (470)
|++++.
T Consensus 397 l~~~~~ 402 (404)
T PTZ00376 397 IHDVVR 402 (404)
T ss_pred HHHHHh
Confidence 999886
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=210.98 Aligned_cols=338 Identities=12% Similarity=0.065 Sum_probs=201.4
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc------c-CCCCCCCcHHHHHHHHhh-hhCCCeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL------S-SRAFYNDKFPVFAERLTS-MFGYDMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~------~-~~~~~~~~~~~l~~~l~~-~~~~~~v~~~~sGteA~ 145 (470)
+..++|+..+.... ..+|.+.+++.+.++.... + +.....++++.+++++.+ ....++|++|+|+++++
T Consensus 32 ~~~~i~l~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al 108 (402)
T TIGR03542 32 SADIIRLGIGDTTQ---PLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV 108 (402)
T ss_pred CCCeEEcCCCCCCC---CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence 45678888774432 2578899999888765421 1 111222334444444321 13457899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..++. +.. +|+ .|++..|+|.+........+. +.....-+.+ .....++.+.-+.+...+.+. .++
T Consensus 109 ~~l~~-l~~---------~gd-~Vlv~~P~y~~~~~~~~~~g~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~-~~~ 174 (402)
T TIGR03542 109 FRLQS-LFG---------SDN-TVAVQDPVYPAYVDSNVMAGR-AGVLDDDGRY-SKITYLPCTKENNFIPDLPEE-PKI 174 (402)
T ss_pred HHHHH-hcC---------CCC-EEEEeCCCCcchHHHHHHcCC-cccccccccc-ceEEEeecchhhCCCCCcccc-CCc
Confidence 87543 322 354 788899999776544433222 0000000000 011222221000010001111 256
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccc-ccCC---CCcceeecccccc-CCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LAS-DWEE---VRPDMVILGKALG-GGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~-~~~~---~~pdi~s~sK~l~-gG~ 299 (470)
++|++..++||||.++ +.+.+++|.++|++||++||+||+|..|...+.. ... ...+ ....+.||||.++ +|+
T Consensus 175 ~~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGl 253 (402)
T TIGR03542 175 DIIYLCSPNNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGV 253 (402)
T ss_pred eEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCc
Confidence 7777445599999999 9999999999999999999999999987544321 111 1111 1223459999997 998
Q ss_pred cceeEEEecHHHH--------hhcCcCCccCCCCCCHHHHHHHHHHHHH--Hh-hhhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 300 IPVSAVLADKEVM--------LCIQPGEHGSTFGGNPLASAVAIASLDV--IR-DEKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 300 ~~ig~v~~~~~~~--------~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~~-~~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
|+||++++++++ ..+.........+.+.+++.++.+.++. .. ..+..+.++++.+.+.+.|++.
T Consensus 254 -RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---- 328 (402)
T TIGR03542 254 -RLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA---- 328 (402)
T ss_pred -ceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 999999998876 2221111112224567777776665542 11 1223344555666666666553
Q ss_pred CCceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 369 PNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 369 p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+....+. |.|+++.++.. .++.++.+.|.+ .||.+.|+. .+++||+ +..+++++++++++|+++
T Consensus 329 --~~~~~~~~~~~f~~v~l~~~---~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 329 --GFKVYGGEHAPYLWVKTPEG---ISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFS--AFGKRENIVEACERIKEA 401 (402)
T ss_pred --CceecCCCceeEEEEECCCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhh
Confidence 13333443 55666666432 256788888875 599998863 4799999 456899999999999876
Q ss_pred H
Q 012138 441 L 441 (470)
Q Consensus 441 l 441 (470)
|
T Consensus 402 ~ 402 (402)
T TIGR03542 402 L 402 (402)
T ss_pred C
Confidence 4
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=206.44 Aligned_cols=320 Identities=19% Similarity=0.142 Sum_probs=198.1
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~ 152 (470)
..++||..+... ++ .++.+.+++.+.+.....+ ......+|.+.++++++ .++|++|+|+++++..+++.+
T Consensus 22 ~~~i~l~~~~n~--~~-~~~~~~~a~~~~~~~~~~Y----~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l 94 (360)
T PRK07392 22 DAILDFSASINP--LG-PPESVIAAIQSALSALRHY----PDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL 94 (360)
T ss_pred ccEEEeCCcCCC--CC-CCHHHHHHHHHHHHHhhcC----CCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence 357888876433 33 7789999988877653322 22223566677777664 567999999999999888764
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEEEE-E
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAGFL-F 230 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~vi-~ 230 (470)
. +++ .|++..|+|.+........+... ... +..++ .......+++++++.. .++++++ +
T Consensus 95 ~----------~g~-~vlv~~P~y~~~~~~~~~~g~~~-~~v---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 155 (360)
T PRK07392 95 A----------QLR-AVYLITPAFGDYRRALRAFGATV-KEL---PLPLDQPSPGLTLRLQTLPPQL----TPNDGLLLN 155 (360)
T ss_pred C----------CCC-eEEEECCCcHHHHHHHHHcCCeE-EEE---ecccccCCcccccCHHHHHHhc----cCCCEEEEe
Confidence 2 354 78889999976654444332211 100 11000 0000001445444332 1445555 6
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCc---ceeecccccc-CCCcceeEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRP---DMVILGKALG-GGVIPVSAV 305 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~p---di~s~sK~l~-gG~~~ig~v 305 (470)
+| +||||.+++ .++|.++++++++ +|+||+|.+|.+.+.... .....-.+ -+.||||.++ +|+ |+||+
T Consensus 156 nP-~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~~ 228 (360)
T PRK07392 156 NP-HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGL-RLGYA 228 (360)
T ss_pred CC-CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCch-heeee
Confidence 66 999999995 5667788888986 666999998865553211 11111112 2349999999 999 99999
Q ss_pred EecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 306 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 306 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
++++++++.+.... ..++.+.+++.++.++|+.-. .+...+.+++.++++.+.|+. +| .+....+.|.|+++
T Consensus 229 v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~----~~-~~~~~~~~~~fl~~ 301 (360)
T PRK07392 229 IAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS----LP-GLTPLPSAANFLLV 301 (360)
T ss_pred eCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh----CC-CcEECCCCCCEEEE
Confidence 99999988876432 346788888888887775311 122333445555555555544 22 33333445656555
Q ss_pred EeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 385 EFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+. . ++.++++.+. ++||.+.|+. .+++||+. .+.++.+++.+.|+++++
T Consensus 302 ~~~--~---~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~---~~~~~~~~l~~al~~~~~ 358 (360)
T PRK07392 302 QSQ--G---SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAV---RTEAENQRLLEALAAILA 358 (360)
T ss_pred EcC--C---CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhh
Confidence 443 2 4677888864 5699998763 47999993 345556777777776654
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=198.90 Aligned_cols=335 Identities=16% Similarity=0.215 Sum_probs=223.6
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC------CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF------YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVET 147 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~ 147 (470)
-|+|..+.. + ..|++.+++...+.....++... .....++.++.+++..|. ++|+||+||||+++.
T Consensus 3 iYlD~~ATT---p---~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNl 76 (386)
T COG1104 3 IYLDNAATT---P---VDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNL 76 (386)
T ss_pred ccccccccC---C---CCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHH
Confidence 477876663 3 57999999999988762222111 123345566778888764 579999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
||+-+... +..+ ++++.||+..-. |-.....+..-...++...|.+...+ -.+ |+++|+++|++ +|.+
T Consensus 77 aI~g~~~a-~~~~---~~~~HIIts~iE-H~aVl~~~~~Le~~g~~Vtyl~V~~~-G~v---~~e~L~~al~~---~T~L 144 (386)
T COG1104 77 AIKGAALA-YRNA---QKGKHIITSAIE-HPAVLNTCRYLERQGFEVTYLPVDSN-GLV---DLEQLEEALRP---DTIL 144 (386)
T ss_pred HHHhhHHh-hhcc---cCCCeEEEcccc-cHHHHHHHHHHHhcCCeEEEeCCCCC-CeE---cHHHHHHhcCC---CceE
Confidence 99964321 2111 123355554333 55544443322222333333333222 222 89999999987 7999
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccc-cccCCCcceeEEE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGK-ALGGGVIPVSAVL 306 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK-~l~gG~~~ig~v~ 306 (470)
|.+..+||++|++.| +++|.++|+++|+++++|.+|+ +|+.- ...+.++ .|+++||- .++|.- .+|+++
T Consensus 145 VSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i~~~~~~--vD~ls~SaHK~~Gpk-GiGaLy 214 (386)
T COG1104 145 VSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--IDLEELG--VDLLSFSAHKFGGPK-GIGALY 214 (386)
T ss_pred EEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee--ccccccC--cceEEeehhhccCCC-ceEEEE
Confidence 999999999999999 9999999999999999999998 43321 2233333 59999984 344443 889999
Q ss_pred ecHHHHhhcCcCCccCCC-------CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE---
Q 012138 307 ADKEVMLCIQPGEHGSTF-------GGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE--- 374 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~-------~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~--- 374 (470)
.++.+. +.+..+++.+ +.|..++++..+++++..+ +....+++.++++|.+.|.+.. |.....
T Consensus 215 v~~~~~--~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~---p~~~~~g~~ 289 (386)
T COG1104 215 VRPGVR--LEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII---PDVYLNGDD 289 (386)
T ss_pred ECCCCc--cCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEcCCc
Confidence 866542 3343333332 3577777777777776443 4567778888888888887642 111110
Q ss_pred EeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHHH
Q 012138 375 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i~ 431 (470)
.......+.+.++. ...+.+...|..+||.++.++ ...+||++...+|++|++
T Consensus 290 ~~rlP~~~~~~f~g----v~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~ 365 (386)
T COG1104 290 EPRLPNILNFSFPG----VEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEID 365 (386)
T ss_pred ccCCCCeEEEEeCC----CcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHH
Confidence 11223334444443 367888888888999998652 578999999999999999
Q ss_pred HHHHHHHHHHhcccCCC
Q 012138 432 EGSKALHDVLELDLPKM 448 (470)
Q Consensus 432 ~~~~~l~~~l~~~~~~~ 448 (470)
.+++.|.++++ .+++.
T Consensus 366 ~~~~~l~~~i~-~lr~~ 381 (386)
T COG1104 366 AAAEALKEIIK-RLREL 381 (386)
T ss_pred HHHHHHHHHHH-HHhhh
Confidence 99999999999 87654
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=204.61 Aligned_cols=329 Identities=14% Similarity=0.139 Sum_probs=215.3
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-------CCCcHHHHHHHHhhhhCC---CeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-------YNDKFPVFAERLTSMFGY---DMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~---~~v~~~~sGte 143 (470)
+..|+|-.+. |..++.+.+++.+.++......... ..+..+++.+.+++++|. +.|++++|+++
T Consensus 19 ~~~yld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAAT------ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCcc------cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHH
Confidence 4567776544 2356889999988886543221111 123356777888888875 46999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
++..+++.+... ..++|+ .||+.++.|++...... ...+.... ..+...+ ..+ |++++++.+++
T Consensus 93 ~i~~~~~~~~~~-----~~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~---~v~~~~~-~~~---d~~~l~~~i~~ 159 (401)
T PRK10874 93 SINLVAQSYARP-----RLQPGD-EIIVSEAEHHANLVPWLMVAQQTGAKVV---KLPLGAD-RLP---DVDLLPELITP 159 (401)
T ss_pred HHHHHHHHhhhc-----cCCCcC-EEEECCcchHHHHHHHHHHHHHhCCEEE---EEecCCC-CcC---CHHHHHHhcCc
Confidence 999998876310 011455 78887888654221111 11111111 0111000 111 78999999865
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCC
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGG 298 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG 298 (470)
++++|++..++|++|.+.| +++|.++|+++|+++|+|++|+ ++.. ...... ..+|+.++| |.+++
T Consensus 160 ---~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~--~~~~~~--~~~d~~~~s~~K~~gp- 226 (401)
T PRK10874 160 ---RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF--PADVQA--LDIDFYAFSGHKLYGP- 226 (401)
T ss_pred ---CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc--cCCchh--cCCCEEEEecccccCC-
Confidence 7888887777999999998 9999999999999999999997 2211 111222 235766554 96653
Q ss_pred CcceeEEEecHHHHhhcCcCCcc------------------CCC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHG------------------STF---GGNPLASAVAIASLDVIRD---EKLAERSAHLG 354 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~------------------~t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~ 354 (470)
. .+|++++++++++.+.+...+ ..| +.|..+++++.++++.+.+ ..+.++.+++.
T Consensus 227 ~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~ 305 (401)
T PRK10874 227 T-GIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLA 305 (401)
T ss_pred C-ccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2 578999999988876542211 011 3566677777788887654 33556666677
Q ss_pred HHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEec
Q 012138 355 EELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTP 421 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~ 421 (470)
+++.+.|+++ | .+... .+.+.++.+.++. .+..++.+.|.++||.+.++. .+++|+++
T Consensus 306 ~~l~~~l~~~----~-g~~~~~~~~~~i~~~~~~~----~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~ 376 (401)
T PRK10874 306 TLAEDALAKL----P-GFRSFRCQDSSLLAFDFAG----VHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASF 376 (401)
T ss_pred HHHHHHHhcC----C-CEEEeCCCCCcEEEEEECC----cCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEe
Confidence 7777766553 2 23332 2344566665543 246789999999999987643 47899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 422 PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
...+|++|++++++.|+++++ .+
T Consensus 377 ~~~nt~edid~ll~al~~~~~-~~ 399 (401)
T PRK10874 377 APYNTQSDVDALVNAVDRALE-LL 399 (401)
T ss_pred cccCCHHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999987 54
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-24 Score=207.57 Aligned_cols=320 Identities=17% Similarity=0.125 Sum_probs=205.6
Q ss_pred eccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchh
Q 012138 79 DFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 79 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
||.+. +++| ++|.+.+++.+.+.... ..+..+...+++++++++++.+.+++++||++|+..+++.+..
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~~---~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~---- 69 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGDD---VYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQ---- 69 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCCc---ccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcC----
Confidence 56665 4556 78999999987653221 1123456889999999999977899999999999999887643
Q ss_pred cccCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC----CCeEEEEEc
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG----DQIAGFLFE 231 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~----~~~~~vi~e 231 (470)
+|+ .|++..++ |...... ..+.+..... .+. +... .|+++|++++++.. .++++|+++
T Consensus 70 -----~gd-~v~~~~~~-~~~~~~~~~~~~~~g~~~~~---v~~--~~~~---~d~~~l~~~i~~~~~~~~~~~~~v~l~ 134 (338)
T cd06502 70 -----PGG-SVICHETA-HIYTDEAGAPEFLSGVKLLP---VPG--ENGK---LTPEDLEAAIRPRDDIHFPPPSLVSLE 134 (338)
T ss_pred -----CCC-eEEEecCc-ceeeecCCcHHHHcCceEEe---ecC--CCCc---CCHHHHHHHhhccCCCcCCcceEEEEE
Confidence 455 66666665 4332211 1111211110 111 0111 28999999997521 257888866
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC--cccCCccccccCCCCccee--eccccccCCCcceeE-EE
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSA-VL 306 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~--g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~-v~ 306 (470)
.++|+ |.++ +.+.+++|.++|++||+++|+||+|..+ ...|.. .......+|++ +++|.++. +.|+ ++
T Consensus 135 ~p~n~-g~~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~---~~g~~~~ 207 (338)
T cd06502 135 NTTEG-GTVY-PLDELKAISALAKENGLPLHLDGARLANAAAALGVA--LKTYKSGVDSVSFCLSKGGGA---PVGAVVV 207 (338)
T ss_pred eecCC-cccc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCC--HHHHHhcCCEEEEeccccCCC---ccceEEE
Confidence 66887 5566 7888999999999999999999998521 112221 11111234544 78898863 2244 55
Q ss_pred ecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 307 ADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 307 ~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
+++++++.+.... .+.+++.+++.++++.++|+.-......++..++++++.+.|++++. ....+.+.+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~------~~~~~~~~~~~v 281 (338)
T cd06502 208 GNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEELGG------LESEVQTNIVLL 281 (338)
T ss_pred CCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcCC------CcccccCCeEEE
Confidence 7888888776432 23455566777777777665311133556777778888888877532 122345666666
Q ss_pred EeccCCCchhHHHHHHHHH---HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 385 EFDKTALPVSAYDICLKMK---ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~---~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.+.... ....++.+.+. ++|+.+.+...+++||++++.+|++++++++++|++
T Consensus 282 ~~~~~~--~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 282 DPVEAN--AVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ecCCcc--HHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 553221 12334444443 679999877668999999999999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=209.35 Aligned_cols=303 Identities=16% Similarity=0.098 Sum_probs=191.5
Q ss_pred CCcHHHHHHHHhhhh------CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 116 NDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~------~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
.++++.+++++.+.+ ..++|++|+|+++++..++.++.. +|+ .|++..|+|.+.........+.
T Consensus 89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~---------pGd-~Vlv~~P~Y~~~~~~~~~~~g~ 158 (468)
T PLN02450 89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAE---------PGD-AFLLPTPYYPGFDRDLKWRTGV 158 (468)
T ss_pred HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCC---------CCC-EEEECCCCCCchHHHHhhcCCc
Confidence 346677777776543 346799999999999999887754 455 8888899987654333211121
Q ss_pred cccccCCCCCCC-CeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 190 NEAIRGFGPLLP-GHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
.... .+... +...+ |++++++++++. +.++++|++..++||||.++ +.+.+++|.++|++||++||+||
T Consensus 159 ~~v~---v~~~~~~~~~~---~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE 231 (468)
T PLN02450 159 EIVP---IHCSSSNGFQI---TESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTT-TRTELNLLVDFITAKNIHLISDE 231 (468)
T ss_pred EEEE---EecCCccCCcC---CHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEEc
Confidence 1110 01100 01111 678898888652 23677666443499999999 99999999999999999999999
Q ss_pred cccCCcccCCcc-c-cccC------C--CCc---ceeecccccc-CCCcceeEEEecHH-HHhhcCcCCccCCCCCCHHH
Q 012138 266 IQSGLARSGRML-A-SDWE------E--VRP---DMVILGKALG-GGVIPVSAVLADKE-VMLCIQPGEHGSTFGGNPLA 330 (470)
Q Consensus 266 v~~g~g~~G~~~-~-~~~~------~--~~p---di~s~sK~l~-gG~~~ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~ 330 (470)
+|.++.+.+..+ . .... + ... -+-+|||.++ +|+ |+|+++++++ +.+.+.... .....+.++
T Consensus 232 ~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~Gl-RiG~li~~~~~l~~~~~~~~--~~~~~s~~~ 308 (468)
T PLN02450 232 IYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGF-RVGAIYSNDEMVVSAATKMS--SFGLVSSQT 308 (468)
T ss_pred cccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCc-cEEEEEECCHHHHHHHHHHh--hcCCCCHHH
Confidence 999765554321 1 1110 0 011 2449999998 999 9999999744 555543221 112356777
Q ss_pred HHHHHHHHHHHh--h---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCCC---chhHHHHHHH
Q 012138 331 SAVAIASLDVIR--D---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTAL---PVSAYDICLK 401 (470)
Q Consensus 331 ~aaa~a~l~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~~---~~~~~~~~~~ 401 (470)
+.++.+.|+.-. + +..++.+++..+.+.+.|+++ .+....+.|. |+++.+..... .....++.+.
T Consensus 309 Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~------gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ 382 (468)
T PLN02450 309 QYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA------GIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKK 382 (468)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcccCCCceEEEEEEchHhcCcCCchHHHHHHHH
Confidence 777766664211 1 223344455555555555543 1333455555 55555432110 0123456777
Q ss_pred HHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 402 MKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 402 l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|.+ .||.+.|+. ++++|++... .+++++++++++|++++. +..
T Consensus 383 ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~-~~~ 432 (468)
T PLN02450 383 IVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVE-SDS 432 (468)
T ss_pred HHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH-hcc
Confidence 765 699999873 5799999432 578999999999999998 655
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=201.30 Aligned_cols=268 Identities=18% Similarity=0.215 Sum_probs=182.7
Q ss_pred cHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccC
Q 012138 118 KFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 195 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 195 (470)
...+++++++++++. +++++|+|+++++..+.+++ . ++ .|++..++|+......... +.
T Consensus 48 ~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l-~---------~g--~vl~~~p~y~~~~~~~~~~-g~------ 108 (330)
T TIGR01140 48 EYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL-A---------PG--RVLVLAPTYSEYARAWRAA-GH------ 108 (330)
T ss_pred cHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-C---------CC--eEEEeCCCcHHHHHHHHHc-CC------
Confidence 358888888888874 68999999999988865543 2 34 5777889987654332211 10
Q ss_pred CCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012138 196 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274 (470)
Q Consensus 196 ~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G 274 (470)
.+..++ |++++++.++ ++++|+ ++| +||+|.++ +.+.+++|.++|++||+++|+||+|.++....
T Consensus 109 ------~~~~~~--d~~~l~~~~~----~~~~v~i~~p-~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 174 (330)
T TIGR01140 109 ------EVVELP--DLDRLPAALE----ELDVLVLCNP-NNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDA 174 (330)
T ss_pred ------EEEEeC--CHHHHHhhcc----cCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCcc
Confidence 123333 8999998884 344555 555 99999999 99999999999999999999999999775432
Q ss_pred CccccccCCCCccee---ecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHH
Q 012138 275 RMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAER 349 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~---s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~ 349 (470)
..... .+..++++ +|||.++ +|+ |+||+++++++++.+.... ..++.+.++++++...++.-.- +..+++
T Consensus 175 ~~~~~--~~~~~~~i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 249 (330)
T TIGR01140 175 SLAPQ--AARFPGLVVLRSLTKFFGLAGL-RLGFVVAHPALLARLREAL--GPWTVNGPARAAGRAALADTAWQAATRAR 249 (330)
T ss_pred chhhH--hccCCCEEEEEecchhhcCchh-hhhheeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHhchHHHHHHHHH
Confidence 22111 11112333 9999998 898 9999999999998887533 3566777887777766652111 234555
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCC
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPL 423 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~ 423 (470)
++.+.+++.+.|+++ + .+....+.|.|.++.+. +..+++++|+++||.+.|+. .+++|+++
T Consensus 250 ~~~~~~~l~~~L~~~----~-~~~~~~~~~~f~~~~~~------~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~-- 316 (330)
T TIGR01140 250 LAAERARLAALLARL----G-GLEVVGGTALFLLVRTP------DAAALHEALARRGILIRDFDNFPGLDPRYLRFAL-- 316 (330)
T ss_pred HHHHHHHHHHHHHhC----C-CceECCCCCeEEEEEcC------CHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe--
Confidence 566666666666553 2 23333455666665443 35689999999999998752 46899994
Q ss_pred CCCHHHHHHHHHHH
Q 012138 424 SISSNELQEGSKAL 437 (470)
Q Consensus 424 ~~t~e~i~~~~~~l 437 (470)
....++ ++++++|
T Consensus 317 ~~~~~~-~~~~~~l 329 (330)
T TIGR01140 317 PTDEEN-DRLEEAL 329 (330)
T ss_pred cCHHHH-HHHHHhh
Confidence 444444 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=206.32 Aligned_cols=282 Identities=17% Similarity=0.225 Sum_probs=190.0
Q ss_pred CCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 114 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
|+.....++.+++++++|. ++|++++|+++++..+++.+.. +|++.|++..|+|......+...+. ..
T Consensus 54 Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~---------~g~~~vli~~P~y~~y~~~~~~~G~-~~ 123 (351)
T PRK01688 54 YPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCE---------PGKDAILYCPPTYGMYSVSAETIGV-EI 123 (351)
T ss_pred CCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcC---------CCCCEEEEcCCCHHHHHHHHHHcCC-EE
Confidence 3444458899999998874 5799999999999999987654 4545888899998654332222211 11
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
.. .+...+ ..+ |++++++++ + ++++|+ ++| +||||.++ +.+.+++|.+.|++ +++||+||+|..|
T Consensus 124 ~~---v~~~~~-~~~---d~~~l~~~~-~---~~~lv~l~nP-nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f 189 (351)
T PRK01688 124 RT---VPTLDN-WQL---DLPAIADNL-D---GVKVVYVCSP-NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEF 189 (351)
T ss_pred EE---eecCCC-CCC---CHHHHHHhc-c---CCcEEEEeCC-CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhc
Confidence 10 111111 112 788888877 2 566666 666 99999999 88899999999886 6889999999987
Q ss_pred cccCCccccccCCCCcce---eecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---
Q 012138 271 ARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--- 343 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi---~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--- 343 (470)
....... ......+.+ -||||.++ +|+ |+|++++++++++.+... ...|+.+.+++.++.++|+.-..
T Consensus 190 ~~~~s~~--~~~~~~~n~iv~rSfSK~~glaGl-RiGy~i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~ 264 (351)
T PRK01688 190 CPQASLA--GWLAEYPHLVILRTLSKAFALAGL-RCGFTLANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAM 264 (351)
T ss_pred CCCCChH--HHHhhCCCEEEEecchHhhcCHHH-HHhHHhCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHH
Confidence 5221111 111112333 49999999 898 999999999999888643 23466777777777777652111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCce-EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-----CCCEE
Q 012138 344 EKLAERSAHLGEELRQHLFKIQQQFPNYV-KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-----HDTIV 417 (470)
Q Consensus 344 ~~~~~~~~~~~~~l~~~L~~l~~~~p~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~i 417 (470)
.+..+.+++.++++.+.|+++ + .+ ...++.+.|+++.+. ++.++.+.|.++||.+.++ .++++
T Consensus 265 ~~~~~~~~~~r~~l~~~L~~~----~-~~~~~~ps~~nfi~~~~~------~~~~l~~~L~~~gi~vr~~~~~~~~~~~i 333 (351)
T PRK01688 265 RERVAEINANRQWLIAALKEI----P-CVEQVFDSETNYILARFT------ASSAVFKSLWDQGIILRDQNKQPGLSNCL 333 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----C-CCCeECCCCCcEEEEEcC------CHHHHHHHHHHCCeEEEECCCcCCCCCeE
Confidence 223344455556666666553 2 23 233556677666553 3678999999999998754 25799
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 012138 418 RLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 418 R~~~~~~~t~e~i~~~~~~l~ 438 (470)
|+++ .+++++++++++|+
T Consensus 334 Ris~---~~~~e~~~l~~al~ 351 (351)
T PRK01688 334 RITI---GTREECQRVIDALR 351 (351)
T ss_pred EEeC---CCHHHHHHHHHhhC
Confidence 9994 47899999998873
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=202.70 Aligned_cols=330 Identities=15% Similarity=0.134 Sum_probs=214.7
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-CC------CCcHHHHHHHHhhhhCC---CeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FY------NDKFPVFAERLTSMFGY---DMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~l~~~l~~~~~~---~~v~~~~sGte 143 (470)
+..|+|..+. +..++.+.+++.+.++........ .+ .+..+++.+.++++++. ++|+||+|+++
T Consensus 23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 4578887654 225688999998888654322111 11 23355677788888863 57999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++..+++.+... .. .+|+ .|++.+..||........+.........+.+..++ ..+ |+++|++++++
T Consensus 97 ~l~~~~~~~~~~-~~----~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~---d~~~l~~~i~~--- 163 (406)
T PRK09295 97 GINLVANSWGNS-NV----RAGD-NIIISEMEHHANIVPWQMLCARVGAELRVIPLNPD-GTL---QLETLPALFDE--- 163 (406)
T ss_pred HHHHHHHHhhhh-cC----CCcC-EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCC-CCC---CHHHHHHhcCC---
Confidence 999888754210 00 1355 67777776554322111110000010000111011 111 78999998875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec--cccccCCCcc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL--GKALGGGVIP 301 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~--sK~l~gG~~~ 301 (470)
++++|++..++|++|.+.| +++|.++|+++|+++++|++|+ +|.. .+....+ .+|++++ +|.++ .. .
T Consensus 164 ~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~--~~D~~~~s~~K~~g-p~-G 232 (406)
T PRK09295 164 RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH--PVDVQAL--DCDFYVFSGHKLYG-PT-G 232 (406)
T ss_pred CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc--ccCchhc--CCCEEEeehhhccC-CC-C
Confidence 7888888888999999998 9999999999999999999997 3221 1222223 3476644 59554 33 6
Q ss_pred eeEEEecHHHHhhcCcCCcc----------------------CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Q 012138 302 VSAVLADKEVMLCIQPGEHG----------------------STFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEE 356 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~----------------------~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~ 356 (470)
+|++++++++++.+.+...+ ..-+.+..++.++.++++.+.+ +.+.++.+++.++
T Consensus 233 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~ 312 (406)
T PRK09295 233 IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHY 312 (406)
T ss_pred cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 89999999887766432111 1114677788888889988765 4566777778888
Q ss_pred HHHHHHHHHhhCCCceEEEe--ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEecC
Q 012138 357 LRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTPP 422 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~~ 422 (470)
+.+.|.++. .+.... ....++.+.++. ....++.+.|.++||.+..+. ++++|++++
T Consensus 313 l~~~l~~~~-----~~~~~~~~~~~~iv~~~~~~----~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~ 383 (406)
T PRK09295 313 ALSQLESVP-----DLTLYGPQNRLGVIAFNLGK----HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLA 383 (406)
T ss_pred HHHHHhcCC-----CEEEeCCCCCceEEEEEECC----cCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEcc
Confidence 877776541 222221 224566665543 256788889988899987542 357999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 012138 423 LSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~ 442 (470)
..+|++||+.+++.|+++..
T Consensus 384 ~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 384 MYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=208.94 Aligned_cols=304 Identities=13% Similarity=0.132 Sum_probs=192.7
Q ss_pred CCcHHHHHHHHhhhhC------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 116 NDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
.++++.+++++.+..| .++|++|+|+++|++.++..+.. ||+ .|++..|+|.+.........+.
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~---------pGD-~Vlv~~P~Y~~~~~~~~~~~G~ 166 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD---------PGD-VFLIPSPYYAAFDRDLRWRTGV 166 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC---------CCC-EEEECCCCccchHHHHHhhCCC
Confidence 4566777777776533 46899999999999999997765 565 8889999998765433211221
Q ss_pred cccccCCCCCCC-CeeeecCCCHHHHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 190 NEAIRGFGPLLP-GHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
..... +... +...+ |+++++++++. .+.++++|++..++||||.++ +.+.+++|+++|++||++||+||
T Consensus 167 ~vv~v---~~~~~~~~~~---~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DE 239 (496)
T PLN02376 167 EIIPV---PCSSSDNFKL---TVDAADWAYKKAQESNKKVKGLILTNPSNPLGTML-DKDTLTNLVRFVTRKNIHLVVDE 239 (496)
T ss_pred EEEEE---eCCCCccCcC---CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEc
Confidence 11110 1100 01112 68888776532 124678676444499999999 99999999999999999999999
Q ss_pred cccCCcccCCcc-cc----ccCC---CCcc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHH
Q 012138 266 IQSGLARSGRML-AS----DWEE---VRPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLAS 331 (470)
Q Consensus 266 v~~g~g~~G~~~-~~----~~~~---~~pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~ 331 (470)
+|..+.+.+..+ .. ..++ ..++ +.+|||.++ +|+ |+|++++ ++.+.+.++... .....+.+.+
T Consensus 240 iY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGl-RvG~li~~~~~l~~~~~~~~--~~~~vs~~~Q 316 (496)
T PLN02376 240 IYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGF-RVGIVYSFNDSVVSCARKMS--SFGLVSSQTQ 316 (496)
T ss_pred CccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcc-eEEEEEECCHHHHHHHHHHh--hcCCCCHHHH
Confidence 999865554322 11 0001 1233 238999997 999 9999998 566665543221 1223566677
Q ss_pred HHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-eeEEEEeccC----CCchhHHHHHHH
Q 012138 332 AVAIASLDVI---RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKT----ALPVSAYDICLK 401 (470)
Q Consensus 332 aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g-~~~~~~~~~~----~~~~~~~~~~~~ 401 (470)
.++.+.|+.- ++ ...+++++++.+.+.+.|++. .+....+.| .|+++.+... .......++++.
T Consensus 317 ~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~------gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ 390 (496)
T PLN02376 317 LMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA------DIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHI 390 (496)
T ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCcccCCCceEEEEEEchhhhccCCchhHHHHHHHH
Confidence 6666555321 11 112333444445555555442 233344555 5565555321 101123678888
Q ss_pred HHHc-CceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 402 MKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 402 l~~~-Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
|.++ ||.+.|+. ++++|+++.. .+++++++++++|.+++. +.+.
T Consensus 391 ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~-~~~~ 441 (496)
T PLN02376 391 IIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVS-KNKN 441 (496)
T ss_pred HHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHH-Hhhh
Confidence 8875 99999863 5799999532 578999999999999997 5544
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=215.43 Aligned_cols=339 Identities=12% Similarity=0.127 Sum_probs=197.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhh-hh-C------CCeEEecCChhHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTS-MF-G------YDMVLPMNTGAEGVET 147 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~-~------~~~v~~~~sGteA~~~ 147 (470)
.++|+..|.... ..++.+.+ +.+.+....+.......++++++++++.+ .. + .++|++|+|+++|+..
T Consensus 101 ~~i~l~~g~p~~---~~~~~v~e-~~~~~~~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~ 176 (527)
T PRK09275 101 DAVSYVRDQLGF---DADEFVYE-LVDGIIGDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCY 176 (527)
T ss_pred HHHhhcCCCCCC---CCCHHHHH-HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHH
Confidence 345666553322 25555656 55655432222222334556666664432 21 1 2379999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.++...+.. .+|| .|++..|+|................. ..+..+ +.+.+ |+++|+++++. +++
T Consensus 177 ~~~aL~~~~ll----~pGD-~Vlv~~P~y~~Y~~~~~l~g~~~~~v--~v~~~~~~~f~~---d~~~l~~~~~~---~tk 243 (527)
T PRK09275 177 IFDSLKENGLL----KAGD-KIALMTPIFTPYLEIPELPRYDLEVV--HINADEENEWQY---PDSELEKLRDP---SIK 243 (527)
T ss_pred HHHHHhhhhcC----CCCC-EEEEeCCChHHHHHHHHHcCCCeEEE--EeecCcccCCCC---CHHHHHhhcCC---CCC
Confidence 88853210111 1565 88889999866543322221111000 000000 11122 78899887765 788
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCcccc-ccC-CCCcceeecccccc-CCCcc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLAS-DWE-EVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~-~~~-~~~pdi~s~sK~l~-gG~~~ 301 (470)
+|+++.++||||.++ +++.+++|+++|++ +|++||+||+|..|.. ..... ... ....-+-||||.++ +|+ |
T Consensus 244 ai~l~nP~NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~~~~~~~~~I~v~SfSK~f~mtG~-R 319 (527)
T PRK09275 244 ALFLVNPSNPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSLFAVLPYNTILVYSFSKYFGATGW-R 319 (527)
T ss_pred EEEEeCCcCCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCHHHhCCCCEEEEeehhhhccCcHh-H
Confidence 888544499999999 99999999999964 5999999999997743 11111 111 11122349999998 899 9
Q ss_pred eeEEEecHH-----HHhhc--------------------------------CcCCccCCCCCCHHHHHH-HH----HHHH
Q 012138 302 VSAVLADKE-----VMLCI--------------------------------QPGEHGSTFGGNPLASAV-AI----ASLD 339 (470)
Q Consensus 302 ig~v~~~~~-----~~~~~--------------------------------~~~~~~~t~~~~~~~~aa-a~----a~l~ 339 (470)
+||++++++ +++.+ +......+.+.+.+.+.+ +. +.|+
T Consensus 320 lG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~ 399 (527)
T PRK09275 320 LGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD 399 (527)
T ss_pred HhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 999999876 43333 122223445555555443 32 2232
Q ss_pred HHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---------------chhHHHHHHHH
Q 012138 340 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------------PVSAYDICLKM 402 (470)
Q Consensus 340 ~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~~l 402 (470)
.-.+ +..++.++++.+.+.+.| +. .+....+.|.|+.| ++.... ..+..+++.+|
T Consensus 400 ~~~~~~~~~~~~~~~Rr~~l~~~L---g~----~~~~~~p~g~fY~~-~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~L 471 (527)
T PRK09275 400 EEDAYKKAMKDIIRRRYKALYEGL---GL----PEPEDPNNAAYYTL-IDLEEWAEKNYGKEFADYLKKNYSPVDLLFRL 471 (527)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHc---CC----CCcCCCCCeeEEEE-EEhHHhhhhccCchhhhhhhccCCHHHHHHHH
Confidence 1111 223344444444443333 11 12223567777666 332110 12467788888
Q ss_pred HHc-CceeccCC-----CCEEEEecCCC-CCHHHHHHHHHHHHHHHhcccC
Q 012138 403 KER-GILAKPTH-----DTIVRLTPPLS-ISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 403 ~~~-Gv~~~~~~-----~~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.++ ||.+.||. .+++|++ +. .+++++.++.++|.++++ +..
T Consensus 472 l~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl~~~l~-~y~ 519 (527)
T PRK09275 472 AEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAIRKLLD-EYY 519 (527)
T ss_pred HhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHHHHHHH-HHH
Confidence 766 99998873 4689999 55 688999999999999998 654
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=202.41 Aligned_cols=312 Identities=16% Similarity=0.191 Sum_probs=206.1
Q ss_pred CCCCCHHHHHHHHHHHHHccccCCCCC-------CCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchh
Q 012138 89 QGHCHPKIMKALQEQAEKLTLSSRAFY-------NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
.|..++.+.+++.+.++.....+.... .....++.+.++++++.+ ++++++|+++|+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~--- 84 (373)
T cd06453 8 TSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRA--- 84 (373)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhc---
Confidence 344678999999888865533221111 123456778888888755 7999999999999999876530
Q ss_pred cccCCCCCcEEEEEccCccccccc---hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccC
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 235 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n 235 (470)
..+|+ .|++.+++|.+.... .....+. ...+.+... ...+ |++++++.+++ ++++|++..++|
T Consensus 85 ---~~~g~-~vl~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~-~~~~---d~~~l~~~l~~---~~~~v~~~~~~~ 150 (373)
T cd06453 85 ---NKPGD-EIVTSVMEHHSNIVPWQQLAERTGA---KLKVVPVDD-DGQL---DLEALEKLLTE---RTKLVAVTHVSN 150 (373)
T ss_pred ---CCCCC-EEEECcchhHHHHHHHHHHHhhcCc---EEEEeecCC-CCCc---CHHHHHHHhcC---CceEEEEeCccc
Confidence 00244 677766664332111 1111111 100111100 0112 89999999976 788888877799
Q ss_pred CCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHh
Q 012138 236 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVML 313 (470)
Q Consensus 236 ~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~ 313 (470)
|+|.+.| +++|.++|++||++|++|++|+ ++.. . .+.....+|++++| |.+++ . ++|++++++++++
T Consensus 151 ~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~--~--~~~~~~~~d~~~~s~~K~~~~-~-g~g~~~~~~~~~~ 219 (373)
T cd06453 151 VLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM--P--VDVQDLGCDFLAFSGHKMLGP-T-GIGVLYGKEELLE 219 (373)
T ss_pred ccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce--e--eeccccCCCEEEeccccccCC-C-CcEEEEEchHHhh
Confidence 9999998 9999999999999999999987 2211 1 11122346888777 99887 5 8899999999888
Q ss_pred hcCcCCccC------------------CC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 314 CIQPGEHGS------------------TF---GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 314 ~~~~~~~~~------------------t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+.+...+. .| +.+..+..+..++++.+.+ +.+.++.+++.+++.+.|+++.
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~---- 295 (373)
T cd06453 220 EMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIP---- 295 (373)
T ss_pred cCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 776532111 11 3455566666677877765 3455666667777777666541
Q ss_pred CceEEE---eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEecCCCCCHHHHHHHH
Q 012138 370 NYVKEV---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 370 ~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~~~~~t~e~i~~~~ 434 (470)
.+..+ ...+.++.+.+.. .+..++.+.|.++||.+.++. .+++|++++..+|++|+++++
T Consensus 296 -~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~ 370 (373)
T cd06453 296 -GVRVYGDAEDRAGVVSFNLEG----IHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALV 370 (373)
T ss_pred -CeEEeCCccccCCeEEEEECC----cCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHH
Confidence 22222 2346677776543 257789999999999986432 568999999999999999999
Q ss_pred HHH
Q 012138 435 KAL 437 (470)
Q Consensus 435 ~~l 437 (470)
+.|
T Consensus 371 ~~l 373 (373)
T cd06453 371 EAL 373 (373)
T ss_pred hhC
Confidence 864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=199.16 Aligned_cols=321 Identities=16% Similarity=0.127 Sum_probs=209.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHccccCC------CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 87 VNQGHCHPKIMKALQEQAEKLTLSSR------AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 87 ~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
.-+|..++.+++++.+.......++. ....+...++++.+++++|.+.+++++|+++|+..++..+..
T Consensus 27 ~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~------ 100 (387)
T PRK09331 27 QRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCK------ 100 (387)
T ss_pred hcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcC------
Confidence 44677889999999998754322111 112446789999999999999999999999999999987754
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-------CCHHHHHHHHHhc----CCCeEEEE
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKES----GDQIAGFL 229 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~Le~~l~~~----~~~~~~vi 229 (470)
+|+ .|++..++ |.+...++...+.. ...++. .|++++++.++++ .+++++|+
T Consensus 101 ---~gd-~Vlv~~~~-h~s~~~~~~~~G~~------------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~ 163 (387)
T PRK09331 101 ---KGD-YVVLDGLA-HYTSYVAAERAGLN------------VREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALAL 163 (387)
T ss_pred ---CCC-EEEECCCc-hHHHHHHHHHcCCE------------EEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEE
Confidence 455 66666665 43333333322211 112221 2799999999753 23688888
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecH
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~ 309 (470)
++.+++++|.+.| +++|.++|++||+++|+|++|+ +|.. .+....++++..+.+++|+++++. ++|++++++
T Consensus 164 l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~--~~~~~~~g~D~~~~s~~K~l~~~~-~~G~l~~~~ 235 (387)
T PRK09331 164 LTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRM--PVDGKKLGADFIVGSGHKSMAASA-PSGVLATTE 235 (387)
T ss_pred EECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCc--CCCHHHcCCCEEEeeCcccccCCC-CEEEEEECH
Confidence 8887999999998 9999999999999999999998 2211 112233455444558889999776 999999999
Q ss_pred HHHhhcCcCCccC------CCC--CCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE---ec
Q 012138 310 EVMLCIQPGEHGS------TFG--GNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RG 377 (470)
Q Consensus 310 ~~~~~~~~~~~~~------t~~--~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~---~~ 377 (470)
++++.+....... .++ ..+...+++.++++.+.+ .+..++..++.+++++.|.++. .+... ..
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~-----g~~~~~~~~~ 310 (387)
T PRK09331 236 EYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIE-----GFKQLGEKPR 310 (387)
T ss_pred HHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CEEEeccCcC
Confidence 9888765421100 011 222334444555655443 2233444556667777777651 22222 22
Q ss_pred cceeEEEEeccC-----CCchhHHHHHHHHHHcCceec-cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 378 RGLFNAVEFDKT-----ALPVSAYDICLKMKERGILAK-PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 378 ~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gv~~~-~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
...+..+....- .....+.++.+.|+++||... ++....+|+.. ..+|++++++++++|+++++ ++
T Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~-~g~t~~di~~l~~aL~~i~~-~~ 382 (387)
T PRK09331 311 NHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLST-YGLTWEQVEYVADAFKEIAE-KY 382 (387)
T ss_pred cCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEe-ccCCHHHHHHHHHHHHHHHH-hc
Confidence 233444432210 001234679999999999854 44455566654 45899999999999999988 64
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=201.29 Aligned_cols=319 Identities=17% Similarity=0.184 Sum_probs=204.0
Q ss_pred CCHHHHHHHHHHHHHccccCCCCC------CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFY------NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
.++.+.+++.+.+.....++...+ .+..+++++++++++|. +.++|++||+++++.+++.+....
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~------- 83 (379)
T TIGR03402 11 VDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQ------- 83 (379)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhc-------
Confidence 678999999988765322211111 22355677888888874 469999999999999998764310
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCC
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPP 243 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~ 243 (470)
++++.|++....|++.......+.. .+....+.+...+ ..+ |++++++++++ +++++++..++|++|.+.|
T Consensus 84 ~~~~~vv~~~~~~~s~~~~~~~~~~-~G~~v~~v~~~~~-g~~---~~~~l~~~i~~---~~~lv~i~~~~n~tG~~~~- 154 (379)
T TIGR03402 84 PEKRHIITTAVEHPAVLSLCQHLEK-QGYKVTYLPVDEE-GRL---DLEELRAAITD---DTALVSVMWANNETGTIFP- 154 (379)
T ss_pred CCCCeEEEcccccHHHHHHHHHHHH-cCCEEEEEccCCC-CcC---CHHHHHHhcCC---CcEEEEEEcccCCeeeccc-
Confidence 2334677766665432211111100 1111111111111 112 78999999875 7888888878999999998
Q ss_pred hhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCcc
Q 012138 244 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHG 321 (470)
Q Consensus 244 ~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~~ 321 (470)
+++|.++|++||+++|+|++|+ +|.. . ++.....+|++++| | +.|.. .+|+++.+++.. +.+...+
T Consensus 155 ---~~~I~~l~~~~g~~vivD~~~~-~g~~--~--~~~~~~~~D~~~~s~~K-~~gp~-G~g~l~v~~~~~--~~p~~~g 222 (379)
T TIGR03402 155 ---IEEIGEIAKERGALFHTDAVQA-VGKI--P--IDLKEMNIDMLSLSGHK-LHGPK-GVGALYIRKGTR--FRPLLRG 222 (379)
T ss_pred ---HHHHHHHHHHcCCEEEEECccc-cccc--c--cCcccCCCCEEEEcHHH-cCCCC-ceEEEEECCCCC--CCCcccC
Confidence 8999999999999999999997 3211 1 22223456888888 9 55544 788888876542 2222111
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec---c-ceeEEEEecc
Q 012138 322 -------STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG---R-GLFNAVEFDK 388 (470)
Q Consensus 322 -------~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~---~-g~~~~~~~~~ 388 (470)
...+.+..+..+..++++.+.+ +.+.++.+++.+++++.|.+ ..| .+..... . +..+.+.+..
T Consensus 223 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR03402 223 GHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA---RIP-DARLNGDPTKRLPNTVNISFEY 298 (379)
T ss_pred CccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh---hCC-CEEEeCCCccCCCCEEEEEecC
Confidence 1224566777777778877654 34445666667777766654 122 2221111 1 2233333432
Q ss_pred CCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 389 TALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. ++.++...|.++||.+.++. .+.+|++++..+|++||+++++.|+++++ ++
T Consensus 299 ~----~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~-~~ 373 (379)
T TIGR03402 299 I----EGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA-RL 373 (379)
T ss_pred C----CHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 2 56789999988899987542 36899999999999999999999999998 75
Q ss_pred CC
Q 012138 446 PK 447 (470)
Q Consensus 446 ~~ 447 (470)
++
T Consensus 374 ~~ 375 (379)
T TIGR03402 374 RA 375 (379)
T ss_pred Hh
Confidence 53
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-22 Score=197.29 Aligned_cols=329 Identities=19% Similarity=0.225 Sum_probs=229.2
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-------CCCcHHHHHHHHhhhhCC---CeEEecCChhHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-------YNDKFPVFAERLTSMFGY---DMVLPMNTGAEG 144 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA 144 (470)
--|+|..++ ++.+..|.+++.+....+.-..... .....++.++.++++.+. +.|+||.+.|+|
T Consensus 23 ~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 23 LVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred eEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 357776554 2257889999999887654332211 123456777788888863 569999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
+..+....... ..+|+ .||+....+|........+....+.+..+.+.. +...+ ++++++..+++ +
T Consensus 97 ln~va~~l~~~------~~~gd-eIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~---~~~~~~~~i~~---~ 162 (405)
T COG0520 97 LNLVARGLGRS------LKPGD-EIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD-DDGLL---DLDALEKLITP---K 162 (405)
T ss_pred HHHHHHHhhhh------hcCCC-EEEEccCcchhhHHHHHHHHHhcCcEEEEEecC-CCCCc---CHHHHHHhcCC---C
Confidence 99988866321 11565 677766666776655544443222222222221 11122 68889987776 8
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcce
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPV 302 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~i 302 (470)
|++|.+..+.|.+|.+.| +++|.++||++|+++++|.+|+ . |.. ..+...+..|+..|| |++.|.- .+
T Consensus 163 Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~---~h~-~idv~~l~~Df~afsgHKwl~gP~-Gi 232 (405)
T COG0520 163 TKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-A---GHL-PIDVQELGCDFLAFSGHKWLLGPT-GI 232 (405)
T ss_pred ceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-c---Ccc-CCCchhcCCCEEEEcccccccCCC-ce
Confidence 999999999999999999 9999999999999999999998 1 111 123233455888777 8777765 88
Q ss_pred eEEEecHHHHhhcCcCCccC------------CC----------CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q 012138 303 SAVLADKEVMLCIQPGEHGS------------TF----------GGNPLASAVAIASLDVIRD---EKLAERSAHLGEEL 357 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~------------t~----------~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l 357 (470)
|++++++++.+.+.|...+. ++ +.|........++++.+++ +.+.++.+++.+++
T Consensus 233 GvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~ 312 (405)
T COG0520 233 GVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYL 312 (405)
T ss_pred EEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999886532111 11 2455566666677887765 56777888888888
Q ss_pred HHHHHHHHhhCCCceEEEe----ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEec
Q 012138 358 RQHLFKIQQQFPNYVKEVR----GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTP 421 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~ 421 (470)
.+.|.++. .+.... .++.++.+.++. ..+.++...|.++||.+..++ ...+|+++
T Consensus 313 ~~~L~~~~-----~v~i~g~~~~~r~~~vsF~v~~----~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~ 383 (405)
T COG0520 313 LEGLSELP-----GVEIYGPPDADRGGIVSFNVKG----IHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASL 383 (405)
T ss_pred HHHHhcCC-----CeEEecCCcccCceEEEEEeCC----CCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEE
Confidence 88887753 232221 357777776664 368899999999998887653 23399999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 012138 422 PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+|+|||+++++.|+++.+
T Consensus 384 ~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 384 HLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred eecCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998763
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=199.67 Aligned_cols=327 Identities=15% Similarity=0.161 Sum_probs=212.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC--C-----CCCcHHHHHHHHhhhhCC---CeEEecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA--F-----YNDKFPVFAERLTSMFGY---DMVLPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~ 145 (470)
.|+|..+. |..++.+.+++.+.++.....+.. . .....+++.+.++++++. +.+++++|+++++
T Consensus 20 ~yld~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l 93 (403)
T TIGR01979 20 VYLDSAAT------SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESI 93 (403)
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHH
Confidence 57775433 335688999988877653222111 1 112345777888888874 4799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
..++..+... . .++|+ .|++.++.|++..... ....+.... +.+...+ ..+ |++++++.+++
T Consensus 94 ~~~~~~~~~~-~----~~~g~-~vl~~~~~~~s~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---~~~~l~~~i~~-- 158 (403)
T TIGR01979 94 NLVAYSWGDS-N----LKAGD-EIVISEMEHHANIVPWQLLAERTGATLK---FIPLDDD-GTL---DLDDLEKLLTE-- 158 (403)
T ss_pred HHHHHHhhhh-c----CCCCC-EEEECcchhhHHHHHHHHHHHhcCcEEE---EEecCCC-CCC---CHHHHHHHhcc--
Confidence 8888765310 0 01344 6777676654322111 111111100 0111000 111 78999998875
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCc
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVI 300 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~ 300 (470)
++++|++..++|++|.+.| +++|.++|++||+++|+|++|+ ++.. ......+ .+|++ +++|.++ +.
T Consensus 159 -~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~~~--~~d~~~~s~~K~~g-p~- 226 (403)
T TIGR01979 159 -KTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQAL--DCDFYVFSGHKMYG-PT- 226 (403)
T ss_pred -CCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcccc--CCCEEEEecccccC-CC-
Confidence 7888888777999999998 9999999999999999999997 2211 1122223 34665 6669765 33
Q ss_pred ceeEEEecHHHHhhcCcCCccC------------------CC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Q 012138 301 PVSAVLADKEVMLCIQPGEHGS------------------TF---GGNPLASAVAIASLDVIRD---EKLAERSAHLGEE 356 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~------------------t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~ 356 (470)
.+|++++++++.+.+.+...+. .| +.+..+++++.++++.+.+ +.+.++..++.++
T Consensus 227 G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~ 306 (403)
T TIGR01979 227 GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAY 306 (403)
T ss_pred CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6789999998887765321110 01 3456677777778877654 4567777888888
Q ss_pred HHHHHHHHHhhCCCceEEEe-----ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEE
Q 012138 357 LRQHLFKIQQQFPNYVKEVR-----GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRL 419 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~ 419 (470)
+.+.|+++. .+.... ..+.++.+.+.. .+..++.+.|.++||.+.++. .+++|+
T Consensus 307 l~~~l~~~~-----g~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRi 377 (403)
T TIGR01979 307 ALERLGEIP-----GLRIYGPRDAEDRGGIISFNVEG----VHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRA 377 (403)
T ss_pred HHHHHhcCC-----CEEEeCCCCccccCceEEEEeCC----cCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEE
Confidence 877776641 233222 236677776643 246788899999999987542 578999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 420 TPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 420 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++..+|++|++++++.|+++++ .+
T Consensus 378 S~~~~~t~~di~~l~~~l~~~~~-~~ 402 (403)
T TIGR01979 378 SFYIYNTEEDIDALVEALKKVRK-FF 402 (403)
T ss_pred EeccCCCHHHHHHHHHHHHHHHH-Hh
Confidence 99999999999999999999887 54
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=197.80 Aligned_cols=311 Identities=16% Similarity=0.112 Sum_probs=204.1
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCC--CCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCC
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAFY--NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~ 166 (470)
+++|.+++++.++++.....+..+. .....++++++++++|.+ .+++++||++|+..+++.++.... .++
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~------~~~ 104 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAK------AEK 104 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhcc------CCC
Confidence 3789999999998875322222222 223467888999988864 578999999999999988765210 123
Q ss_pred cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
+.|++.++++ ..........+.. +..+|. .|+++|++++++ ++++|++...+|++|.+.
T Consensus 105 ~~vl~~~~~h-~s~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~ 168 (371)
T PRK13520 105 PNIVVPESAH-FSFDKAADMLGVE------------LRRAPLDDDYRVDVKAVEDLIDD---NTIGIVGIAGTTELGQVD 168 (371)
T ss_pred ceEEecCcch-HHHHHHHHHcCce------------EEEecCCCCCcCCHHHHHHHHhh---CCEEEEEEcCCcCCcccC
Confidence 3677766664 3322222222211 112221 289999999986 566566333478999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCc----ccCCccccccCCCCcceeec--cccccCCCcceeEEEe-cHHHHhh
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLA----RSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLA-DKEVMLC 314 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g----~~G~~~~~~~~~~~pdi~s~--sK~l~gG~~~ig~v~~-~~~~~~~ 314 (470)
| +++|.++|++||+++++|++|+++. +.+..+.....+ .|.+++ .|...+|. |+|+++. ++++++.
T Consensus 169 ~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~--vd~~~~s~~K~~~a~~-~~G~~~~~~~~~~~~ 241 (371)
T PRK13520 169 P----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPG--VDSITIDPHKMGLAPI-PAGGILFRDESYLDA 241 (371)
T ss_pred C----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCC--CceEEECCccccCccC-CceEEEEcCHHHHHh
Confidence 8 9999999999999999999998643 111112222223 355544 36544566 8888775 5557666
Q ss_pred cCcCC---cc-C----CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE-EEeccceeE
Q 012138 315 IQPGE---HG-S----TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFN 382 (470)
Q Consensus 315 ~~~~~---~~-~----t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~~~~~g~~~ 382 (470)
+.... .+ . ..+.++..++++.++++.+.+ +++.++..++++++.+.|++++ +. ...+...++
T Consensus 242 l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~v 315 (371)
T PRK13520 242 LAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERG------FEPVIEPVLNIV 315 (371)
T ss_pred hcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCC------CEEecCCCceEE
Confidence 53210 00 0 011234567777788887654 3467778888888888887652 22 223445566
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+. +..++.+.|.++||.+.++. .+++|++++..+|++|++++++.|+++++
T Consensus 316 ~~~~~------~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 316 AFDDP------NPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred EEecC------CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 65443 46789999999999998764 56899998888999999999999998875
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=200.07 Aligned_cols=313 Identities=17% Similarity=0.156 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.++++.+++.+.+.. +.+. ...+..+++++.+++++|.+ .+++++||++|+..+++.+.. +|+ .
T Consensus 10 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~---------~g~-~ 76 (356)
T cd06451 10 VPPRVLKAMNRPMLG--HRSP-EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE---------PGD-K 76 (356)
T ss_pred CCHHHHHHhCCCccC--CCCH-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCC---------CCC-E
Confidence 457788877544321 1100 12234678889999998752 478999999999999986643 465 5
Q ss_pred EEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 169 IVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 169 ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
|++..+++++.. .......+.. ..+.+..++ . ..|++++++.++++ ++++|++..++|++|.+.| +
T Consensus 77 vl~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~~-~---~~~~~~l~~~i~~~--~~~~v~i~~~~~~~G~~~~----~ 143 (356)
T cd06451 77 VLVGVNGVFGDRWADMAERYGAD---VDVVEKPWG-E---AVSPEEIAEALEQH--DIKAVTLTHNETSTGVLNP----L 143 (356)
T ss_pred EEEecCCchhHHHHHHHHHhCCC---eEEeecCCC-C---CCCHHHHHHHHhcc--CCCEEEEeccCCCcccccC----H
Confidence 666655544421 1111111211 111111110 1 22899999999753 6778876666999999998 9
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc--CCc---
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP--GEH--- 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~--~~~--- 320 (470)
++|.++|++||+++++|++|+ +|.. .+....++ +|++ +.+|.++++. ++|+++.++++++.+.. ...
T Consensus 144 ~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~~~--~d~~~~s~~K~l~~p~-g~G~l~~~~~~~~~~~~~~~~~~~~ 217 (356)
T cd06451 144 EGIGALAKKHDALLIVDAVSS-LGGE--PFRMDEWG--VDVAYTGSQKALGAPP-GLGPIAFSERALERIKKKTKPKGFY 217 (356)
T ss_pred HHHHHHHHhcCCEEEEeeehh-ccCc--cccccccC--ccEEEecCchhccCCC-CcceeEECHHHHHHHHhcCCCCcee
Confidence 999999999999999999987 3321 12222233 3554 5579999776 88999999998877642 111
Q ss_pred --------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-eeE
Q 012138 321 --------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFN 382 (470)
Q Consensus 321 --------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g-~~~ 382 (470)
....+.++.+++++.++++.+.+ +.+.++.+++.+++.+.|++++.. .+......+ .+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~ 294 (356)
T cd06451 218 FDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLK---LLAKPELRSPTVT 294 (356)
T ss_pred ecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCe---eccCcccCCCceE
Confidence 11223556667777788877654 456777788888888888775322 111111122 233
Q ss_pred EEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.++.. .+..++++.|.++ ||.+.++ .++++|+++...+|+||+++++++|+++++
T Consensus 295 ~~~~~~~---~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 295 AVLVPEG---VDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred EEECCCC---CCHHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 3333322 3678899999999 9998764 256899999999999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=198.49 Aligned_cols=316 Identities=16% Similarity=0.138 Sum_probs=205.0
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|.+.+++.... .+....+ .+...++++.++++++.+ .+++++||+++++.++..+.. +++
T Consensus 10 ~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~---------~~~- 75 (355)
T TIGR03301 10 TSATVRDAMLVDW---CHWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP---------RDG- 75 (355)
T ss_pred CCHHHHHHhhhhc---cCCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC---------CCC-
Confidence 4567777766622 2211112 356778889999988753 577899999999999987653 345
Q ss_pred EEEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 168 IIVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 168 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.+++..+++++... ......+.+.... +... ... .|+++++++++++ .+++.+++...++++|.+.|
T Consensus 76 ~vi~~~~~~~~~~~~~~a~~~g~~~~~i---~~~~-~~~---~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~---- 143 (355)
T TIGR03301 76 KLLVLINGAYGERLAKICEYLGIPHTDL---NFSE-YEP---PDLNRIEEALAAD-PDITHVATVHHETTTGILNP---- 143 (355)
T ss_pred eEEEECCCchhhHHHHHHHHcCCceEEE---ecCC-CCC---CCHHHHHHHHHhC-CCceEEEEEecCCcccchhH----
Confidence 44444444444322 1111111111100 0000 011 1799999999763 24556654445889999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCC-------
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------- 319 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~------- 319 (470)
+++|.++|++||+++|+|++++ +|. ..+.+..++++.-+.+++|+++|+. ++|++++++++++.+....
T Consensus 144 ~~~i~~l~~~~~~~livD~~~s-~g~--~~~~~~~~~~d~~~~s~~K~l~~~~-G~g~~~~~~~~~~~~~~~~~~~~~~~ 219 (355)
T TIGR03301 144 LEAIAKVARSHGAVLIVDAMSS-FGA--IPIDIEELDVDALIASANKCLEGVP-GFGFVIARRDLLEASAGNARSLYLDL 219 (355)
T ss_pred HHHHHHHHHHcCCEEEEEeccc-cCC--cccchhhcCccEEEecCCcccccCC-ceeEEEECHHHHHHhhCCCCCceeeH
Confidence 9999999999999999999886 332 2233344444333458889988765 7899999999988765210
Q ss_pred ----------ccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-EeccceeEEE
Q 012138 320 ----------HGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAV 384 (470)
Q Consensus 320 ----------~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~-~~~~g~~~~~ 384 (470)
....++.+...+.++.++++.+.+ ++..++.+++.+++.+.|++++.. .+.. ....+.++++
T Consensus 220 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~---~~~~~~~~~~~~~~~ 296 (355)
T TIGR03301 220 YDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQ---PLLPERWQSPIIVSF 296 (355)
T ss_pred HHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCe---eecCCCCCCCcEEEE
Confidence 112456777888888888887754 335566777888888888775321 1111 1123444555
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.++... ..+..++.++|.++||.+.++. .+++||++...+++++++++++.|++++
T Consensus 297 ~~~~~~-~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 297 LYPDDP-DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred ECCCCC-cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 544311 1245789999999999998864 3789999888889999999999998764
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=204.74 Aligned_cols=302 Identities=16% Similarity=0.178 Sum_probs=189.2
Q ss_pred CCcHHHHHHHHhhhhC------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 116 NDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
..++.++++++.+.++ .++|++|+|+++|++.++.++.. +|+ .|++..|.|.+.........+.
T Consensus 98 ~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~---------pGD-~Vlv~~P~Y~~f~~~~~~~~g~ 167 (447)
T PLN02607 98 KSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILAD---------PGD-ALLVPTPYYPGFDRDLRWRTGV 167 (447)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCC---------CCC-EEEEcCCCCcchHHHHHhcCCc
Confidence 3456677777776543 35799999999999998876654 565 7888899987664432211111
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
......+.. .+...+ |++++++++++. +.++++++ ++| +||+|.++ +++.+++|.++|++||+.||+||
T Consensus 168 ~vv~v~~~~--~~~f~~---~~~~le~a~~~a~~~~~~vk~lll~nP-~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DE 240 (447)
T PLN02607 168 KIVPIHCDS--SNNFQV---TPQALEAAYQEAEAANIRVRGVLITNP-SNPLGATV-QRSVLEDILDFVVRKNIHLVSDE 240 (447)
T ss_pred EEEEEeCCC--CCCCcC---CHHHHHHHHHHHHHhCCCeeEEEEeCC-CCCcCccc-CHHHHHHHHHHHHHCCCEEEEec
Confidence 111100000 000111 789999988652 34678777 555 99999999 99999999999999999999999
Q ss_pred cccCCcccCCcc-cc-c---cCCC-C-cc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCC-CCCHHHH
Q 012138 266 IQSGLARSGRML-AS-D---WEEV-R-PD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTF-GGNPLAS 331 (470)
Q Consensus 266 v~~g~g~~G~~~-~~-~---~~~~-~-pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~-~~~~~~~ 331 (470)
+|.++.+.+..+ .. + ..+. . ++ +.+|||.++ +|+ |+|++++ ++++++.++.. ..| ..+.+++
T Consensus 241 iYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~Gl-RvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q 316 (447)
T PLN02607 241 IYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARRM---SSFTLVSSQTQ 316 (447)
T ss_pred cccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcc-eEEEEEEcCHHHHHHHHHH---hhcCCCCHHHH
Confidence 999743333221 11 1 1110 1 22 348999998 898 9999997 67776665432 223 3455666
Q ss_pred HHHHHHHHH--Hhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-ceeEEEEeccC-C--CchhHHHHHHHH
Q 012138 332 AVAIASLDV--IRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKT-A--LPVSAYDICLKM 402 (470)
Q Consensus 332 aaa~a~l~~--~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g~~~~~~~~~~-~--~~~~~~~~~~~l 402 (470)
.++...|+. +.+ ...++++++..+.+.+.|++. .+...++. |.|+++.+... . ......++.++|
T Consensus 317 ~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~------gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~l 390 (447)
T PLN02607 317 HLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA------GIECLKGNAGLFCWMNLSPLLETPTREGELALWDSI 390 (447)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHH
Confidence 665555432 001 112333333444444455442 23344555 55666655321 0 001235677777
Q ss_pred HH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 403 KE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 403 ~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+ .||.+.|+. ++++|+++.. .+++.+++++++|.++++ +.+
T Consensus 391 l~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~-~~~ 439 (447)
T PLN02607 391 LREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMD-RRK 439 (447)
T ss_pred HHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH-HHH
Confidence 76 599998873 6899999432 479999999999999998 543
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=198.42 Aligned_cols=288 Identities=14% Similarity=0.149 Sum_probs=190.0
Q ss_pred HHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 119 FPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
..++.+.++++++ .++|++++|+++++..+++++.. +|++.|++.+++|....... ...+.....
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~---------~g~~~vlv~~p~y~~~~~~~-~~~g~~~~~--- 127 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV---------PGRDAVLVTPPVFGMYAVCA-RLQNAPLVE--- 127 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC---------CCCCeEEEcCCChHHHHHHH-HHcCCEEEE---
Confidence 5678888888775 45799999999999999987754 46457888888874322211 111111110
Q ss_pred CCCCC--CeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012138 197 GPLLP--GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274 (470)
Q Consensus 197 ~~~~~--~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G 274 (470)
.+... +...+ |++++++.+.. .++++|++..++||||.++ +.+.++++.+.|+ +++++|+||+|..|....
T Consensus 128 v~~~~~~~~~~~---d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~ 200 (364)
T PRK04781 128 VPLVDGADGFHA---DVPAIVAAALA--SNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVP 200 (364)
T ss_pred EecCCCccCCCc---CHHHHHHHHhc--cCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCc
Confidence 01100 00111 67777555433 2677777555599999999 7888888888886 479999999999875322
Q ss_pred Cccc-cccCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--h-hhHHHH
Q 012138 275 RMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--D-EKLAER 349 (470)
Q Consensus 275 ~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~-~~~~~~ 349 (470)
.... .+..+-..-+.||||.++ +|+ |+||+++++++++.+.... ..++.+.+++.++.++|+.-. . .+..+.
T Consensus 201 ~~~~~~~~~~~vi~~~SfSK~~gl~Gl-RvGy~v~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 277 (364)
T PRK04781 201 SAVGLLARYDNLAVLRTLSKAHALAAA-RIGSLIANAELIAVLRRCQ--APYPVPTPCAALAEQALSAPALAVTARRVAE 277 (364)
T ss_pred chHHHHhhCCCEEEEecChhhcccccc-eeeeeeCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 1111 111111122449999999 999 9999999999999887433 356777887777777665311 1 223334
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----CCEEEEecCCC
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLTPPLS 424 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~iR~~~~~~ 424 (470)
+++.++.+.+.|+++ |......++.|.|+++.+. +..++.+.|.++||.+.++. .+++||+ .
T Consensus 278 ~~~~r~~l~~~L~~~----~~~~~~~p~~g~f~~~~~~------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris---~ 344 (364)
T PRK04781 278 VRAERERLHAALAQL----PGVRRVYPSQGNFLLVRFD------DAEAAFQALLAAGVVVRDQRAAPRLSDALRIT---L 344 (364)
T ss_pred HHHHHHHHHHHHHhC----CCCCeECCCCCcEEEEEcC------CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEe---C
Confidence 555666666666553 2222234567877777653 35678899999999998763 5799999 3
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 012138 425 ISSNELQEGSKALHDVLE 442 (470)
Q Consensus 425 ~t~e~i~~~~~~l~~~l~ 442 (470)
.+.++.++++++|+++..
T Consensus 345 ~~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 345 GTPEQNDRVLAALQRTQA 362 (364)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 478999999999988654
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=199.62 Aligned_cols=334 Identities=14% Similarity=0.197 Sum_probs=215.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-CC------CCcHHHHHHHHhhhhCC---CeEEecCChhHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FY------NDKFPVFAERLTSMFGY---DMVLPMNTGAEG 144 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~------~~~~~~l~~~l~~~~~~---~~v~~~~sGteA 144 (470)
..|+|..+. |..++.+.+++.+.+......... .+ .+...++.+.++++++. ++|+|++|++++
T Consensus 33 ~iyLd~a~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 33 LVYLDNAAT------SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred eEEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 467776333 335688999998887655322211 11 12245777788888864 479999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
+..+++.... .. ..+|+ .|++..+.|++.......+.........+.+..++. .+ |++++++.+++ +
T Consensus 107 l~~i~~~~~~-~~----~~~gd-~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~-~~---~~~~l~~~i~~---~ 173 (424)
T PLN02855 107 INLVAYTWGL-AN----LKPGD-EVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDE-VL---DVEQLKELLSE---K 173 (424)
T ss_pred HHHHHHHhhh-hc----CCCcC-EEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCC-Cc---CHHHHHHHhcc---C
Confidence 9998875310 00 01455 677777665432211111100000110011111110 12 78999999875 7
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcce
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPV 302 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~i 302 (470)
+++|++..++|++|.+.| +++|.++|++||+++|+|++|+ ++.. .+....+ .+|++ ++.|.+ |.. ++
T Consensus 174 t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~~~~~~~--~~d~~~~s~~K~~-gp~-G~ 242 (424)
T PLN02855 174 TKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--PVDVQTL--GADFLVASSHKMC-GPT-GI 242 (424)
T ss_pred ceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--CCCchhc--CCCEEEeeccccc-CCC-cc
Confidence 889998888999999998 9999999999999999999996 2211 1122223 34665 667944 433 68
Q ss_pred eEEEecHHHHhhcCcCCccC---------------------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q 012138 303 SAVLADKEVMLCIQPGEHGS---------------------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELR 358 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~ 358 (470)
|++++++++++.+.+...+. ..+.+..+.+++.++++.+.+ +.+.++.+++.++++
T Consensus 243 G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~ 322 (424)
T PLN02855 243 GFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLY 322 (424)
T ss_pred EEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999887775431110 112556677777778887655 556677777888887
Q ss_pred HHHHHHHhhCCCceEEE-------eccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC------------CCEEE
Q 012138 359 QHLFKIQQQFPNYVKEV-------RGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH------------DTIVR 418 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------------~~~iR 418 (470)
+.|+++ | .+... ..++.++.+.++. .+..++.+.|.++ ||.+..+. .+++|
T Consensus 323 ~~L~~~----~-g~~i~~~~~~~~~~r~~~v~~~~~~----~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iR 393 (424)
T PLN02855 323 EKLSSV----P-GVRIYGPKPSEGVGRAALCAFNVEG----IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASAR 393 (424)
T ss_pred HHHhcC----C-CEEEeCCCcccccCcccEEEEEECC----cCHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEE
Confidence 777654 1 22222 1234566666543 2567899999888 99987542 46899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 419 LTPPLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
+++++.+|++|++++++.|+++++ .++..
T Consensus 394 iS~~~ynt~~di~~l~~~l~~~~~-~~~~~ 422 (424)
T PLN02855 394 ASLYFYNTKEEVDAFIHALKDTIA-FFSSF 422 (424)
T ss_pred EEeccCCCHHHHHHHHHHHHHHHH-HHHhh
Confidence 999999999999999999999998 65543
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=203.04 Aligned_cols=255 Identities=14% Similarity=0.033 Sum_probs=164.1
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
+|+ .|++.+|+|.+........+..... .++ .++...+ |++.+++.+.++..+++++++..+|||||.++
T Consensus 141 pGd-~Vlv~~P~y~~y~~~~~~~g~~~~~----v~l~~~~~~~~---d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~- 211 (423)
T PLN02397 141 PGS-TIYIPNPTWGNHHNIFRDAGVPVRT----YRYYDPKTRGL---DFDGLLEDLKAAPDGSFVLLHACAHNPTGVDP- 211 (423)
T ss_pred CCC-EEEEeCCCchhHHHHHHHcCCeEEE----eecccCcCCcc---CHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-
Confidence 466 7999999986665444333322111 011 0011122 78888888875434667777665699999999
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccc---cccCC-CCcceeecccccc-CCCcceeEEE--e-cHHH
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLA---SDWEE-VRPDMVILGKALG-GGVIPVSAVL--A-DKEV 311 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~---~~~~~-~~pdi~s~sK~l~-gG~~~ig~v~--~-~~~~ 311 (470)
+.+.+++|.++|++||++||+||+|.+|.+.+. ... +...+ ...-+-||||+++ +|+ |+||++ + ++++
T Consensus 212 s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~-RvG~~v~~~~~~~~ 290 (423)
T PLN02397 212 TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGE-RVGALSVVCKSADV 290 (423)
T ss_pred CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccc-cceEEEEEeCCHHH
Confidence 999999999999999999999999998865431 111 11111 1112339999999 899 999984 3 5555
Q ss_pred Hhh----cCcCCccCCCCCCHHHHHHHHHHHHHH--h------hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc
Q 012138 312 MLC----IQPGEHGSTFGGNPLASAVAIASLDVI--R------DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379 (470)
Q Consensus 312 ~~~----~~~~~~~~t~~~~~~~~aaa~a~l~~~--~------~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g 379 (470)
++. +........++.+.+.+.++.++|+.- . -+++++.++++++.+.+.|++++.. ..+..+.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~--~~~~~~~p~g 368 (423)
T PLN02397 291 AVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSP--GDWSHITKQI 368 (423)
T ss_pred HHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCcccCCc
Confidence 443 222112223345666777666666421 0 1235556777777777777775311 1134456888
Q ss_pred eeEEEEeccCCCchhHHHHHHHHHHc-CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMKER-GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|+.| ++. + .+++++|+++ ||.+.+.+ |+++. ..+++.+++++++|+++++
T Consensus 369 g~fl~-~~l-----~-~~~~~~Ll~~~~V~v~~~~----Ri~~~-~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 369 GMFSF-TGL-----N-KEQVDRMTKEYHIYMTRDG----RISMA-GLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred eEEEe-cCC-----C-HHHHHHHHHhCCEEECCCC----eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 88888 432 2 3488888666 99987543 88842 3899999999999999986
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-22 Score=197.95 Aligned_cols=320 Identities=11% Similarity=0.088 Sum_probs=203.7
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CC-----CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AF-----YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~ 146 (470)
..|+|..+. +..++.+.+++.+.+......+. .+ ..+..+++++.++++++. +.+++++|+++++.
T Consensus 18 ~~yl~~~~~------~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPAG------TQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCcc------CCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence 467776433 23678999999998875432221 11 123457888889998874 36999999999988
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
.++..+... ..+|+ .|++.++.|.+..... ....+.... +.+..++...+ |++++++.+++
T Consensus 92 ~~~~~~~~~------~~~gd-~vl~~~~~~~s~~~~~~~~~~~~g~~~~---~~~~~~~~~~~---~~~~l~~~i~~--- 155 (397)
T TIGR01976 92 LLSRAISRR------WGPGD-EVIVTRLDHEANISPWLQAAERAGAKVK---WARVDEATGEL---HPDDLASLLSP--- 155 (397)
T ss_pred HHHHHHHhc------CCCCC-EEEEcCCchHhHHHHHHHHHHhcCCEEE---EEeccccCCCc---CHHHHHHhcCC---
Confidence 777655320 01455 6777777654322111 111121111 11111101112 78999998865
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIP 301 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ 301 (470)
++++|+++.++|++|.+.| +++|.++|++||+++|+||+|. .+. . ......+ .+|++ +++|.+ |. +
T Consensus 156 ~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~-~~~~~~~--~~d~~~~s~~K~~--g~-~ 223 (397)
T TIGR01976 156 RTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G-LIDVQAT--GADFLTCSAYKFF--GP-H 223 (397)
T ss_pred CceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c-CCCHHHc--CCCEEEEechhhc--CC-c
Confidence 6888888777999999998 9999999999999999999996 211 1 1112223 34655 667877 44 7
Q ss_pred eeEEEecHHHHhhcCcCCccCC----------CCCCHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHH
Q 012138 302 VSAVLADKEVMLCIQPGEHGST----------FGGNPLASAVAIASLDVIRDE-----------------KLAERSAHLG 354 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t----------~~~~~~~~aaa~a~l~~~~~~-----------------~~~~~~~~~~ 354 (470)
+|++++++++++.+.+...... .+.+...+++..++++.+.+. ...++..++.
T Consensus 224 ~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (397)
T TIGR01976 224 MGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLA 303 (397)
T ss_pred eEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHH
Confidence 8999999998887765321111 124555666666777766432 2234445566
Q ss_pred HHHHHHHHHHHhhCCCceEEEe-----ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---------------CC
Q 012138 355 EELRQHLFKIQQQFPNYVKEVR-----GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------------HD 414 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------------~~ 414 (470)
+++++.|+++. .+.... ..+.++.+.+.. .+..++.++|.++||.+..+ ..
T Consensus 304 ~~l~~~L~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~ 374 (397)
T TIGR01976 304 EYLLVGLSDLP-----GVTLYGVARLAARVPTVSFTVHG----LPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDEG 374 (397)
T ss_pred HHHHHHHhcCC-----CEEEeCCCCccCCCceEEEEeCC----cCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCCC
Confidence 66666665532 232222 245566665532 25678999999999998754 24
Q ss_pred CEEEEecCCCCCHHHHHHHHHHH
Q 012138 415 TIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 415 ~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+++|+++...+|++|++++++.|
T Consensus 375 ~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 375 GVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CeEEEEeeccCCHHHHHHHHHhC
Confidence 68999999999999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=198.15 Aligned_cols=318 Identities=15% Similarity=0.155 Sum_probs=202.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHh
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKW 155 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~ 155 (470)
+|||.++.. -+ .+|.+.+++.+...... .| +.+...+|++.+++++|.+.+++++||++++..++.+...
T Consensus 1 ~~~~~~~~~---~~-p~~~~~~a~~~~~~~~~----~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~- 71 (333)
T PRK10534 1 MIDLRSDTV---TR-PSRAMLEAMMAAPVGDD----VYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCE- 71 (333)
T ss_pred CcccccccC---CC-CCHHHHHHHHhccCCCc----ccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcC-
Confidence 378888843 34 68999999876543322 23 4566789999999999999889999999999888876543
Q ss_pred chhcccCCCCCcEEEEEccCccc-cccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---CCeEEEEE
Q 012138 156 GYVKKKFSIDEAIIVSCCGCFHG-RTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLF 230 (470)
Q Consensus 156 ~~~~~~~~~g~~~ii~~~~~yhg-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---~~~~~vi~ 230 (470)
+|+ .|++..++|.. .... .....+.... ..+... ...+ |+++|+++++++. .++++|++
T Consensus 72 --------~gd-~vi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~---d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 72 --------RGE-EYIVGQAAHNYLYEAGGAAVLGSIQPQ---PIDAAA-DGTL---PLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred --------CCC-eeEEechhhhhHhcCCchHHhcCceEE---eecCCC-CCCC---CHHHHHHhhcccCcCcccceEEEE
Confidence 565 55555554321 1111 1111100000 001100 0111 7899998885410 14677775
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc---CCccccccCCCCcc--eeeccccccCCCccee-E
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS---GRMLASDWEEVRPD--MVILGKALGGGVIPVS-A 304 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~---G~~~~~~~~~~~pd--i~s~sK~l~gG~~~ig-~ 304 (470)
+. +++|.+. +.+.+++|.++|++||++|++||+|. |+.. +... ..... .+| +++|||+++. ++| +
T Consensus 136 ~n--p~~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~-~~~~~-~~~~~~~s~SK~~~~---~~G~~ 206 (333)
T PRK10534 136 EN--THNGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL-KEITQ-YCDSFTICLSKGLGT---PVGSL 206 (333)
T ss_pred ec--CCCCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH-HHHHh-cCCEEEEEeEcCCCC---cccce
Confidence 53 3469999 88899999999999999999999987 3211 2111 00011 112 4589997763 567 5
Q ss_pred EEecHHHHhhcCcCCccC--CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 305 VLADKEVMLCIQPGEHGS--TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
+++++++++.++...... .+..+.++++++.++|+.. ....++..+.++++.+.|++++ +...++.+.|+
T Consensus 207 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~g------~~~~~~~~nfv 278 (333)
T PRK10534 207 LVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREAG------ADVMRQDTNML 278 (333)
T ss_pred EEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhCC------CccCCCCceEE
Confidence 888999988876433222 2223445566666666532 1233344445677778877752 23334567777
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.++. . +..++.+.|+++||++.++. .+|++..+.+|+|++++++++|++++.
T Consensus 279 ~~~~~~-~---~~~~~~~~l~~~gi~v~~~~--~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 279 FVRVGE-E---QAAALGEYMRERNVLINASP--IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred EEECCc-h---hHHHHHHHHHHcCeeecCCc--eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 776642 1 46788899999999998763 689986666899999999999998765
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=194.35 Aligned_cols=309 Identities=17% Similarity=0.163 Sum_probs=192.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALK 150 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~ 150 (470)
.+..++||..+... + ..+|.+.+++.+.+..... ..|...-..++.+.++++++ .++|++|+|+++++..+++
T Consensus 16 ~~~~~i~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~--~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 16 EGNYRIWLDKNENP--F-DLPEELKEEIFEELKRVPF--NRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVK 90 (337)
T ss_pred CCCceEEecCCCCC--C-CCCHHHHHHHHHHhhcCcc--ccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHH
Confidence 34567888877533 3 2678899999888754221 11222335677777777775 5689999999999987766
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL- 229 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi- 229 (470)
.+ +|+ .|++..|+|........ ..+..... .+...+ ..+ |++++++.+. ++++++
T Consensus 91 ~~-----------~gd-~V~v~~P~y~~~~~~~~-~~g~~~~~---v~~~~~-~~~---d~~~l~~~~~----~~~~v~~ 146 (337)
T PRK03967 91 LF-----------EGK-HIVITPPTFGMYSFYAK-LNGIPVID---VPLKED-FTI---DGERIAEKAK----NASAVFI 146 (337)
T ss_pred Hh-----------CCC-eEEEeCCChHHHHHHHH-HcCCeEEE---eecCCC-CCc---CHHHHHHhcc----CCCEEEE
Confidence 43 244 78889999864332221 11111110 011000 112 7788887643 455555
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEEe
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLA 307 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~ 307 (470)
++| +||||.+++ .++|.++++ +++++|+||+|.+|... .... .+...-..-+.||||.++ +|+ |+||+++
T Consensus 147 ~~P-~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~~-~~~~~~~~~~~vi~l~S~SK~~~l~Gl-RiG~iv~ 218 (337)
T PRK03967 147 CSP-NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSGK-SLIGLIDEYPNLILLRTFSKAFGLAGI-RAGYAIA 218 (337)
T ss_pred eCC-CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhccc-chHHHHhhCCCEEEEecchHhhcchhh-hheeeec
Confidence 555 999999995 566667774 79999999999987421 1111 111111112349999999 998 9999999
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEe
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~ 386 (470)
++++++.+.... ..++.+.+++.++.++|+..+. .+..+...+.++.+.+.|.+. ..++.|.++++.+
T Consensus 219 ~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~---------~~~~~~~~~~~~~ 287 (337)
T PRK03967 219 NEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY---------AYPSDANFLLLKL 287 (337)
T ss_pred CHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC---------cCCCCCcEEEEhH
Confidence 999988886433 3456788888888777753211 112223333334444444321 1234455544422
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+.|.++||.+.++ ..+++||++ .+.++.+++++.|+++.+
T Consensus 288 ----------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~---~~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 288 ----------DAYDYLLENGIVVRKLSGRLEGHIRVTV---GKREENDEFIKALKEIKE 333 (337)
T ss_pred ----------HHHHHHHHCCEEEEeCCCCCCCeEEEec---CCHHHHHHHHHHHHHHHH
Confidence 2678899999998654 257899993 467888999999988765
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=195.27 Aligned_cols=302 Identities=11% Similarity=0.106 Sum_probs=188.5
Q ss_pred CCcHHHHHHHHhhhh---C---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 116 NDKFPVFAERLTSMF---G---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~---~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
.+++..+++++.+.. . .++|++|+|+++++..+++++.. +|+ .|++.+|+|...........+.
T Consensus 47 ~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~---------~gd-~Vlv~~P~y~~~~~~~~~~~g~ 116 (388)
T PRK08637 47 PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD---------QGD-TVLLPDHNWGNYKLTFNTRRGA 116 (388)
T ss_pred HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC---------CCC-EEEEcCCCCccHHHHHHHhcCC
Confidence 345566666655432 1 24689999999999999887765 455 7888999986655432222221
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhc-CCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-----cCcEEEE
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-----YNILMIA 263 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-----~gillI~ 263 (470)
.... .+...+...+ |++++++.++.. ....+++++..++||||.++ +++.+++|+++|++ ||++||+
T Consensus 117 ~vv~---v~~~~~~~~~---d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~iI~ 189 (388)
T PRK08637 117 EIVT---YPIFDEDGGF---DTDALKEALQAAYNKGKVIVILNFPNNPTGYTP-TEKEATAIVEAIKELADAGTKVVAVV 189 (388)
T ss_pred EEEE---ecccCCCCcC---CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 1111 1110011122 789999988721 12344455443499999999 99999999999885 9999999
Q ss_pred eccccCCcccCCcc-c-ccc-CCCCcce--e---ecccccc-CCCcceeEEEec------HHHHhhcCcC----CccCCC
Q 012138 264 DEIQSGLARSGRML-A-SDW-EEVRPDM--V---ILGKALG-GGVIPVSAVLAD------KEVMLCIQPG----EHGSTF 324 (470)
Q Consensus 264 Dev~~g~g~~G~~~-~-~~~-~~~~pdi--~---s~sK~l~-gG~~~ig~v~~~------~~~~~~~~~~----~~~~t~ 324 (470)
||+|.+|.+.+... . +.. .+....+ + ++||.++ +|+ |+||++.+ +++++.+... .....+
T Consensus 190 De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGl-RlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (388)
T PRK08637 190 DDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGF-RVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS 268 (388)
T ss_pred cccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCccc-ceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC
Confidence 99999886555321 1 111 1222232 2 7999865 898 99999853 6777666421 112234
Q ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHhhCCCceEEEeccceeEEE-EeccCCCchhHH
Q 012138 325 GGNPLASAVAIASLDVIRDEKLAERSAHLG-------EELRQHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTALPVSAY 396 (470)
Q Consensus 325 ~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~-------~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 396 (470)
+.+.++++++.++|+ +..+.++.+++. +.+.+.|++.. .+..+...++.|.++.| .++ . .+..
T Consensus 269 ~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~--~~~~~~~~~~~~g~~~~~~l~--~--~~~~ 339 (388)
T PRK08637 269 NGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGK--YDDAWQAYPFNSGYFMCLKLK--G--VDAE 339 (388)
T ss_pred CCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCcccccccceEEEEecCC--h--HHHH
Confidence 577888888877764 223333333333 33333333221 11123344555555555 443 1 3577
Q ss_pred HHHHHHH-HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 397 DICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 397 ~~~~~l~-~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++++.|. ++||.+.+.+.+++||+... .+++++++++++|.++++ .++
T Consensus 340 ~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~-~~~ 388 (388)
T PRK08637 340 ELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIK-DLR 388 (388)
T ss_pred HHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHH-hcC
Confidence 8999986 56998876667899999654 689999999999999998 653
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=194.05 Aligned_cols=294 Identities=13% Similarity=0.097 Sum_probs=194.9
Q ss_pred CcHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcccccc-chhcccCCcc
Q 012138 117 DKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL-AAISMSCDNE 191 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~-~~~~~~~~~~ 191 (470)
+..+++.+.++++++.+ .+++|+||+++++.++..+.. +++++|+... ++++... ......+...
T Consensus 35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~---------~~~~vlv~~~-~~~~~~~~~~a~~~g~~~ 104 (363)
T TIGR02326 35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP---------KDGKLLVVIN-GAYGARIVQIAEYLGIPH 104 (363)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC---------CCCeEEEEeC-ChhhHHHHHHHHHcCCce
Confidence 34567788888888753 589999999999999987643 4554455444 4455431 1111111111
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.. .+... ...+ |+++++++++++ .+++++.+..+.|++|.+.| +++|.++|++||+++|+|++|+ +|
T Consensus 105 ~~---v~~~~-~~~~---d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g 171 (363)
T TIGR02326 105 HV---VDTGE-VEPP---DVVEVEAILAAD-PAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FG 171 (363)
T ss_pred EE---EeCCC-CCCC---CHHHHHHHHhhC-CCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-cc
Confidence 00 01100 0111 789999998763 24566666666999999998 9999999999999999999987 43
Q ss_pred ccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCC------------------ccCCCCCCHHHH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE------------------HGSTFGGNPLAS 331 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~------------------~~~t~~~~~~~~ 331 (470)
.. .+....++ +|++ +++|+++|+. ++|+++++++.++.+.+.. ....|+.+....
T Consensus 172 ~~--~~~~~~~~--~D~~~~s~~K~l~~p~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~ 246 (363)
T TIGR02326 172 GI--PIDIAELH--IDYLISSANKCIQGVP-GFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVV 246 (363)
T ss_pred Cc--ccchhhcC--ccEEEecCccccccCC-cceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHH
Confidence 22 22333344 4654 6779998776 7899999998877653210 113456777788
Q ss_pred HHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcC
Q 012138 332 AVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERG 406 (470)
Q Consensus 332 aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G 406 (470)
.+..++++.+.+ ++..++.+++.+++++.|++++.. .+... ...+.+..+.++... ..+..++.+.|.++|
T Consensus 247 ~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~L~~~g 322 (363)
T TIGR02326 247 HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFE---PLLDDEIQSPIITSFYSPEDP-DYRFADFYQRLKEQG 322 (363)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCe---eccCcccCCceEEEEECCCCC-CCCHHHHHHHHHHCC
Confidence 888888877644 346677888888888888776322 11111 112333445443320 125678999999999
Q ss_pred ceeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 407 ILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 407 v~~~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.+.++. .+.+|+++...++.+++++++++|++++.
T Consensus 323 i~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 323 FVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred EEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 9998773 57899997667899999999999999875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=197.66 Aligned_cols=278 Identities=14% Similarity=0.169 Sum_probs=183.4
Q ss_pred cHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccC
Q 012138 118 KFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 195 (470)
Q Consensus 118 ~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 195 (470)
...+|.+.++++++ .++|++|+|+++++..+++++.. +|++.|++..|+|......+...+.. ...
T Consensus 61 ~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~---------~g~d~vlv~~P~y~~y~~~~~~~g~~-v~~-- 128 (354)
T PRK04635 61 QPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCE---------PGQDSIACFGPTYGMYAISAETFNVG-VKA-- 128 (354)
T ss_pred CHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcC---------CCCCeEEEcCCChHHHHHHHHHcCCE-EEE--
Confidence 35778888888876 45799999999999999987754 56457888999986544332222111 100
Q ss_pred CCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC
Q 012138 196 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 275 (470)
Q Consensus 196 ~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~ 275 (470)
.+...+ ..+ |++.+++ + . ++++|++..++||||.++ +.+.+++|.+.|+ +++||+||+|..|.....
T Consensus 129 -v~~~~~-~~~---~~~~l~~-~-~---~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s 195 (354)
T PRK04635 129 -LPLTAD-YQL---PLDYIEQ-L-D---GAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYS 195 (354)
T ss_pred -EecCCC-CCC---CHHHHHh-c-c---CCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCcc
Confidence 011000 111 6777763 3 2 677777555599999999 7777777777765 499999999987743211
Q ss_pred ccccccCCCCcc---eeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHH
Q 012138 276 MLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAE 348 (470)
Q Consensus 276 ~~~~~~~~~~pd---i~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~ 348 (470)
.... ....+. +.||||.++ +|+ |+||+++++++++.+... ...++.+.+.+.++.++|+.... ....+
T Consensus 196 ~~~~--~~~~~~~iv~~S~SK~~~l~Gl-RlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 270 (354)
T PRK04635 196 VADL--LASYPNLVVLRTLSKAFALAGA-RCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMKFQVL 270 (354)
T ss_pred hHHH--HhhCCCEEEEechHHHhhhhHH-HHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111 111122 349999998 898 999999999999887642 23456666777777666643111 22334
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCC
Q 012138 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLS 424 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~ 424 (470)
.+++.++++.+.|+++ + .+...++.|.|+++.+. +..++.+.|.++||.+..+. ++++|++ .
T Consensus 271 ~~~~~r~~l~~~L~~~----~-~~~~~~~~g~f~~~~~~------~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis---~ 336 (354)
T PRK04635 271 DLNAQGARLQAALSMY----G-GAKVLEGNGNYVLAKFD------DVDAVFKALWDAGIVARAYKDPRLANCIRFS---F 336 (354)
T ss_pred HHHHHHHHHHHHHHhC----C-CceECCCCCcEEEEECC------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEE---e
Confidence 4555556666666653 1 23444567777777553 35678889999999986542 5789999 3
Q ss_pred CCHHHHHHHHHHHHH
Q 012138 425 ISSNELQEGSKALHD 439 (470)
Q Consensus 425 ~t~e~i~~~~~~l~~ 439 (470)
.+++++++++++|++
T Consensus 337 ~~~e~~~~l~~al~~ 351 (354)
T PRK04635 337 SNRAETDKLIGLIRN 351 (354)
T ss_pred CCHHHHHHHHHHHHH
Confidence 578999999999975
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=191.28 Aligned_cols=310 Identities=17% Similarity=0.163 Sum_probs=195.8
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~ 151 (470)
+..++||..+... ...++.+.+++.+.+.....++. ..-..++.+.++++++ .++|++|+|+++++..+++
T Consensus 21 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~- 93 (349)
T PRK07908 21 GPGLLDFAVNVRH---DTPPEWLRERLAARLGDLAAYPS---TEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR- 93 (349)
T ss_pred CCCeEEecCCCCC---CCCCHHHHHHHHHHhhHhhcCCC---ccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-
Confidence 5678999887533 22678899999988765432211 1234567777777664 5689999999999988877
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
+ . + + .+++..|+|......... .+..... .+...+ ..+ |++++ ++ +++++++.
T Consensus 94 l-~---------~-~-~viv~~P~y~~~~~~~~~-~G~~i~~---v~~~~~-~~~---d~~~l----~~---~~~~i~l~ 146 (349)
T PRK07908 94 L-R---------P-R-RAAVVHPSFTEPEAALRA-AGIPVHR---VVLDPP-FRL---DPAAV----PD---DADLVVIG 146 (349)
T ss_pred c-C---------C-C-eEEEeCCCChHHHHHHHH-cCCEEEe---eccCcc-cCc---ChhHh----cc---CCCEEEEc
Confidence 2 2 3 3 455678888554332222 2211110 011111 111 45533 32 56676653
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcce---eecccccc-CCCcceeEEEe
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLA 307 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi---~s~sK~l~-gG~~~ig~v~~ 307 (470)
.++||||.+++ .++|.++|++ +.++|+||+|..|. .+........+. +++ .||||.++ +|+ |+||+++
T Consensus 147 np~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~-~~~~~~l~~~~~-~~~i~i~S~SK~~~l~Gl-RiG~~~~ 218 (349)
T PRK07908 147 NPTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAV-PGEPESLAGDDL-PGVLVLRSLTKTWSLAGL-RVGYALG 218 (349)
T ss_pred CCCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhc-cCCccccccccC-CCEEEEeecccccCCccc-eeeeeec
Confidence 34999999995 5567778864 77888899998763 233222211111 232 38899998 998 9999999
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH--Hh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccceeEE
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV--IR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNA 383 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g~~~~ 383 (470)
++++++.+..... .+..+++.++++.+.++. .+ -++++++++++++++.+.|+++ .+.... ..|.+++
T Consensus 219 ~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~p~~g~~~~ 290 (349)
T PRK07908 219 APDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV------GARVVDPAAAPFVL 290 (349)
T ss_pred CHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC------CcEeccCCCceEEE
Confidence 9999988764332 345566666655544431 11 1335556666666676666653 133333 4566666
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.++ +...+.+.|+++||.+.++. .+++|+++ .+++++++++++|++++.
T Consensus 291 ~~~~------~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 291 VRVP------DAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEILK 346 (349)
T ss_pred EECC------cHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHHh
Confidence 6543 24678889999999998752 57999994 578899999999998876
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-23 Score=206.61 Aligned_cols=336 Identities=12% Similarity=0.124 Sum_probs=190.2
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHH-HHHhhhh-----CCC--eEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFA-ERLTSMF-----GYD--MVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~-----~~~--~v~~~~sGteA~~~a 148 (470)
++++..+.. +..+|++++++.+.+....+.......+.++++. +++.+.+ ..+ +|++|+|+++|+..+
T Consensus 96 ~i~l~~g~p----~~~~~~~~~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 96 IISYVIDQL----GFDPDAFLYEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred HHhhcCCCC----CCCCCHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 445555532 2235666677777653222211112223344444 3444432 123 799999999999998
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc-CCcccccCCCCCCCC---eeeecCCCHHHHHHHHHhcCCC
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPLLPG---HLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
+..+...... .+|+ .|++..|+|........... +.........+...+ .+.+ |+++|+++++. +
T Consensus 172 ~~~l~~~~ll----~pGD-~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~---d~~~l~~~~~~---~ 240 (521)
T TIGR03801 172 FDSLKANELL----KKGD-KIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQY---PDKELEKLRDP---S 240 (521)
T ss_pred HHHHhHhhcC----CCCC-EEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCC---CHHHHHHhcCC---C
Confidence 8763211111 1565 88889999865443321111 100000000000000 0222 78889887654 7
Q ss_pred eEEEE-EccccCCCccccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCcc----eeecccccc-
Q 012138 225 IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPD----MVILGKALG- 296 (470)
Q Consensus 225 ~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pd----i~s~sK~l~- 296 (470)
+++|+ ++| +||||.++ +++.+++|.++|++| |++||+||+|..|.. ..... ....|+ +.||||.++
T Consensus 241 ~kai~l~nP-~NPTG~vl-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl--~~~~~~~vI~v~SfSK~fg~ 314 (521)
T TIGR03801 241 IKALFVVNP-SNPPSVAM-SDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSL--FAELPYNTIGVYSFSKYFGA 314 (521)
T ss_pred CcEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccch--hhhCCCCEEEEEcchhhccC
Confidence 88877 555 99999999 999999999999987 999999999997743 11111 111222 348999997
Q ss_pred CCCcceeEEEecHH-----HHhh--------c------------------------CcCCccCCCCCCHHHHH-----HH
Q 012138 297 GGVIPVSAVLADKE-----VMLC--------I------------------------QPGEHGSTFGGNPLASA-----VA 334 (470)
Q Consensus 297 gG~~~ig~v~~~~~-----~~~~--------~------------------------~~~~~~~t~~~~~~~~a-----aa 334 (470)
+|+ |+||++++++ ++.. + +......+.+.+.+.+. ++
T Consensus 315 ~G~-RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~ 393 (521)
T TIGR03801 315 TGW-RLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSL 393 (521)
T ss_pred chh-hhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 899 9999998754 2211 1 11112233444444433 22
Q ss_pred HHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc---------------hhHHH
Q 012138 335 IASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP---------------VSAYD 397 (470)
Q Consensus 335 ~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~---------------~~~~~ 397 (470)
.+.++.-.. +..++.++++.+.+.+.| +. .+....+.|.|+.| ++..... .+..+
T Consensus 394 ~all~~~~~y~~~~~~~~~~R~~~l~~~L---g~----~~~~~~~~g~~Y~~-~di~~~~~~~~~~~f~~~l~~~~~~~~ 465 (521)
T TIGR03801 394 FALMDKENAYKAETKDICRRREKLLFRGL---GL----PLQEDPNDVAYYTL-IDLEEWAEKNYGEEFSSYLKKNYSPVD 465 (521)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHhc---CC----CCcCCCCCeEEEEE-eehHHHHHHhcchHHHHHHhccCCHHH
Confidence 233321111 223333444444443333 11 12123456655555 3322100 13567
Q ss_pred HHHHHHHc-CceeccCC-----CCEEEEecCCC-CCHHHHHHHHHHHHHHHhccc
Q 012138 398 ICLKMKER-GILAKPTH-----DTIVRLTPPLS-ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 398 ~~~~l~~~-Gv~~~~~~-----~~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++.+|.++ ||.+.|+. .+++|++ +. .+++++.++.++|.++++ +.
T Consensus 466 ~~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~~-~~ 517 (521)
T TIGR03801 466 VLFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKILD-EY 517 (521)
T ss_pred HHHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHHH-HH
Confidence 88888766 99998873 4689999 54 689999999999999987 64
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=190.35 Aligned_cols=329 Identities=14% Similarity=0.126 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEcc
Q 012138 95 KIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174 (470)
Q Consensus 95 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~ 174 (470)
.+.+++.+++......+ .......+|++.++++++.+.+++|+||++|+..++.++.+ +|| |+...+
T Consensus 58 a~~~a~~~a~~~g~~~Y--~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~---------pGD--Vii~~p 124 (460)
T PRK13238 58 AMSDRQWAAMMRGDEAY--AGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIK---------KGD--VVPSNY 124 (460)
T ss_pred hhhHHHHHHHHhCCccc--CCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCC---------CCC--EEccCC
Confidence 46777777775432211 12445688999999999999999999999999999887754 577 666666
Q ss_pred CccccccchhcccCCcccccCCCCCCC----C-eeeecC-CCHHHHHHHHHhcC-CCeEEEEEccccCCCc-cccCChhh
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLP----G-HLKVDF-GDITALEKIFKESG-DQIAGFLFEPIQGEAG-VIIPPDGY 246 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~-~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G-~~~~~~~~ 246 (470)
.|..........++.+.. .+..+ . ...+.. -|+++|++++++++ +++++|+++..+||+| .++ +.+.
T Consensus 125 ~~~~~~~~i~~~G~~~v~----v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~-s~~~ 199 (460)
T PRK13238 125 HFDTTRAHIELNGATAVD----LVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPV-SMAN 199 (460)
T ss_pred cccchHHHHHHcCCEEEE----EeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCC-CHHH
Confidence 664332222222222111 11100 0 000110 18999999998654 4799999888899986 888 8999
Q ss_pred HHHHHHHHHhcCcEEEEeccccC----Cccc---CC-ccccccC----CCCcceeeccccccCCCcceeE-EEec-HHHH
Q 012138 247 LKAVRDLCSKYNILMIADEIQSG----LARS---GR-MLASDWE----EVRPDMVILGKALGGGVIPVSA-VLAD-KEVM 312 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g----~g~~---G~-~~~~~~~----~~~pdi~s~sK~l~gG~~~ig~-v~~~-~~~~ 312 (470)
+++|.++|++||++||+|++|.. |... |. ....... +--.|..++|-.- .|+.+.|+ ++.+ ++++
T Consensus 200 l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K-~g~~~~GG~i~~~d~~l~ 278 (460)
T PRK13238 200 LRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKK-DAMVNIGGLLCFRDEDLF 278 (460)
T ss_pred HHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEeccc-CCCCcceeEEEcChHHHH
Confidence 99999999999999999998852 2110 10 0000000 0113555555111 11124344 4555 5788
Q ss_pred hhcCcCC---c-cCCCCCCHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 313 LCIQPGE---H-GSTFGGNPLA-SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 313 ~~~~~~~---~-~~t~~~~~~~-~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+.++... + ..++++.+.. ++|+..+|+...+++..+...+..++|.+.|++. .+..+.+.|.++.+ ++
T Consensus 279 ~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~------G~~~~~p~Gg~~v~-~d 351 (460)
T PRK13238 279 TECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA------GVPIQTPAGGHAVF-VD 351 (460)
T ss_pred HHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC------CCCeEccCCceEEE-EE
Confidence 7776542 2 3377775555 4444445654434444455555668888888774 23444556555544 33
Q ss_pred cCCC-------chhHHHHHHHHHHc-CceeccCC-----------------CCEEEEecCC-CCCHHHHHHHHHHHHHHH
Q 012138 388 KTAL-------PVSAYDICLKMKER-GILAKPTH-----------------DTIVRLTPPL-SISSNELQEGSKALHDVL 441 (470)
Q Consensus 388 ~~~~-------~~~~~~~~~~l~~~-Gv~~~~~~-----------------~~~iR~~~~~-~~t~e~i~~~~~~l~~~l 441 (470)
.... +..+.+++.+|.++ ||.+.|++ .+.+||++|- ..|.++++.++++|.++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 352 AGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred chhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 3211 12357788888766 99987642 4789999774 459999999999999988
Q ss_pred hcccCCCCC
Q 012138 442 ELDLPKMRK 450 (470)
Q Consensus 442 ~~~~~~~~~ 450 (470)
+ +...+.-
T Consensus 432 ~-~~~~~~~ 439 (460)
T PRK13238 432 E-NRESIKG 439 (460)
T ss_pred H-hHhhcCC
Confidence 7 6555443
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=187.62 Aligned_cols=323 Identities=14% Similarity=0.117 Sum_probs=200.3
Q ss_pred cCCCCCHHHHHHHHHHHHHccccCC------CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhccc
Q 012138 88 NQGHCHPKIMKALQEQAEKLTLSSR------AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 88 ~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.-|+..|++.+++.+.......++. ....+...++++.+++++|.+++++++|+++++..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~------- 81 (361)
T cd06452 9 RGGRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCE------- 81 (361)
T ss_pred cCCCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 4566788888888887743322211 112456789999999999999999999999999999987654
Q ss_pred CCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcC----CCeEEEEEccccCC
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESG----DQIAGFLFEPIQGE 236 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~----~~~~~vi~epi~n~ 236 (470)
+|+ .|++..++|.+. .......+..... .+..++ ...+ |+++|++++++.. .++++|++..++||
T Consensus 82 --~gd-~Vl~~~~~~~~~-~~~~~~~g~~~~~---v~~~~~~~~~~---d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~ 151 (361)
T cd06452 82 --KGD-WVVVDGLAHYTS-YVAAERAGLNVRE---VPNTGHPEYHI---TPEGYAEVIEEVKDEFGKPPALALLTHVDGN 151 (361)
T ss_pred --CCC-EEEEcCCcchHH-HHHHHhcCCEEEE---EecCCCCCccc---CHHHHHHHHHHHhhccCCCceEEEEECCCCC
Confidence 455 566666664332 2222222211111 111111 0122 7899999887421 26788887666999
Q ss_pred CccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC
Q 012138 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 316 (470)
Q Consensus 237 ~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~ 316 (470)
+|.+.+ +++|.++|++||+++|+||+|+ +|.. .+....++.+..+.+++|+++++. ++|++++++++++.+.
T Consensus 152 tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~~d~~~~s~~K~l~~~~-~~G~l~~~~~~~~~l~ 223 (361)
T cd06452 152 YGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELGADFIVGSGHKSMAASA-PIGVLATTEEWADIVF 223 (361)
T ss_pred Ceeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcCCCEEEecCCccccCCC-CeEEEEECHHHHHHHh
Confidence 999987 9999999999999999999997 2211 122223344334558889998776 9999999999988875
Q ss_pred cCCcc------CCC--CCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE---eccceeEEE
Q 012138 317 PGEHG------STF--GGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAV 384 (470)
Q Consensus 317 ~~~~~------~t~--~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~---~~~g~~~~~ 384 (470)
..... ..+ +.....++++.++++.+.+ -....+..++.+++.+.|.++ | .+... .+...++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l----~-g~~v~~~~~~~~n~~~~ 298 (361)
T cd06452 224 RTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI----E-GIKQLGEKPKNHDLMFF 298 (361)
T ss_pred ccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEECCCCCCCceEEE
Confidence 42211 001 1112234444455554322 111222223346666766654 1 22222 234445555
Q ss_pred EeccCC-----CchhHHHHHHHHHHcCceec-cCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 385 EFDKTA-----LPVSAYDICLKMKERGILAK-PTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 385 ~~~~~~-----~~~~~~~~~~~l~~~Gv~~~-~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
....-. ......++.+.|+++||.+. ++..+++|++.. .+++|+++.++++|++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~~-g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 299 ETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLSTY-GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence 443100 01134479999999999964 344568899863 379999999999998765
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=193.67 Aligned_cols=321 Identities=15% Similarity=0.125 Sum_probs=204.5
Q ss_pred CCCHHHHHHHHHHHHHccccCCCC------CCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccC
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAF------YNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKF 162 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~ 162 (470)
..++.+.+++.+.++.....+... .....+++++.++++++ .+.|++++|+++++..++..+... ...
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~-~~~--- 86 (381)
T PRK02948 11 PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNA-LPQ--- 86 (381)
T ss_pred CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-ccC---
Confidence 367899999998887543222211 12345677888888886 457999999999999998877531 000
Q ss_pred CCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 163 ~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
+++ .|++.... |....................+...+ . ..|+++|++.+++ ++++|+++.++||+|.+.|
T Consensus 87 -~g~-~vv~~~~~-h~s~~~~~~~~~~~g~~v~~v~~~~~-~---~~d~~~l~~~l~~---~~~lv~~~~~~n~tG~~~~ 156 (381)
T PRK02948 87 -NKK-HIITTPME-HASIHSYFQSLESQGYTVTEIPVDKS-G---LIRLVDLERAITP---DTVLASIQHANSEIGTIQP 156 (381)
T ss_pred -CCC-EEEECCcc-cHHHHHHHHHHHhCCCEEEEEeeCCC-C---CCCHHHHHHhcCC---CCEEEEEECCcCCcEeehh
Confidence 233 66665544 33222211110000000000111110 1 1289999988865 6788888777999999998
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHH-HhhcCcC-
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV-MLCIQPG- 318 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~-~~~~~~~- 318 (470)
+++|.++|+++|+++|+|++|+ +|... +....++ .|++ +++|.+++ . .+|+++.++++ ...+...
T Consensus 157 ----~~~I~~l~~~~~~~vivD~~~~-~g~~~--~~~~~~~--~d~~~~s~~K~~gp-~-G~G~l~~~~~~~~~~~~~~~ 225 (381)
T PRK02948 157 ----IAEIGALLKKYNVLFHSDCVQT-FGKLP--IDVFEMG--IDSLSVSAHKIYGP-K-GVGAVYINPQVRWKPVFPGT 225 (381)
T ss_pred ----HHHHHHHHHHcCCEEEEEChhh-ccccc--cCcccCC--CCEEEecHHhcCCC-C-cEEEEEEcCCCCCCCcccCC
Confidence 9999999999999999998886 44221 2233344 3554 77797652 2 57888887764 1111110
Q ss_pred ---CccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-----cceeEEEEecc
Q 012138 319 ---EHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-----RGLFNAVEFDK 388 (470)
Q Consensus 319 ---~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-----~g~~~~~~~~~ 388 (470)
.....++.|.++.+++.++++.+.+ ++..++.+++++++.+.|++++.. +. ..+ ...++.+.+..
T Consensus 226 ~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~----v~-~~~~~~~~~~~i~~~~~~~ 300 (381)
T PRK02948 226 THEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLP----IE-VEGHSTSCLPHIIGVTIKG 300 (381)
T ss_pred CCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----EE-EeCCCccCcCCEEEEEeCC
Confidence 0112345788888888888886533 556778888888888888775321 11 111 11233333321
Q ss_pred CCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 389 TALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+..++...|.++||.+..+. .+++|+++...+|++|++++++.|+++++ ++
T Consensus 301 ----~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~-~~ 375 (381)
T PRK02948 301 ----IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN-QF 375 (381)
T ss_pred ----CCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 246778888888899997532 36899999999999999999999999987 55
Q ss_pred C
Q 012138 446 P 446 (470)
Q Consensus 446 ~ 446 (470)
-
T Consensus 376 ~ 376 (381)
T PRK02948 376 Y 376 (381)
T ss_pred h
Confidence 3
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-21 Score=190.03 Aligned_cols=329 Identities=16% Similarity=0.165 Sum_probs=201.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC---CCCcHHHHHHHHhh---hhC---CCeEEecCChhHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF---YNDKFPVFAERLTS---MFG---YDMVLPMNTGAEGVET 147 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~---~~~---~~~v~~~~sGteA~~~ 147 (470)
|+|..+.. ..++.|++++.+.++.....+... .......+++.+++ ..+ .++|++|+|+++++..
T Consensus 2 yld~aa~~------~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNATT------MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCCC------CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 56655442 257899999999887643322211 11122334443333 333 4689999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccch--hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
+++.+......+ ++++.|++....|+...... +...+.. ..+.+..++ ..+ |+++|++++++ ++
T Consensus 76 ~~~~~~~~~~~~----~~~~~vi~~~~e~ps~~~~~~~~~~~G~~---v~~v~~~~~-g~~---d~~~l~~~i~~---~t 141 (382)
T TIGR03403 76 VLKGVYFDEILK----GGKNHIITTEVEHPAVRATCAFLESLGVE---VTYLPINEQ-GTI---TAEQVREAITE---KT 141 (382)
T ss_pred HHHHHHHhhccc----CCCCEEEEcCCccHHHHHHHHHHHHCCCE---EEEEecCCC-CCC---CHHHHHHhccc---CC
Confidence 988653100001 23445666554432211111 1111111 101111111 111 78999998875 67
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig 303 (470)
++|++..++||+|.+.| +++|.++|++||+++|+|++|+ +|.. .+... ...+|++++| |.++ .. .+|
T Consensus 142 ~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~~~~--~~~~D~~~~s~~K~~g-p~-G~g 210 (382)
T TIGR03403 142 ALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PVDVQ--KAGVDFLSFSAHKFHG-PK-GVG 210 (382)
T ss_pred eEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--ccCcc--ccCCCEEEEcchhhCC-CC-ceE
Confidence 88887777999999998 9999999999999999999987 2211 11222 2235777666 9654 22 467
Q ss_pred EEEecHHHHhhcCcCCc-------cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 304 AVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+++.++.. .+.+... ...++.|.+++.++.++++...+ +...++.+.+++++.+.|.++ | .+..
T Consensus 211 ~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~----~-~~~~ 283 (382)
T TIGR03403 211 GLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL----P-DVFV 283 (382)
T ss_pred EEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----C-CEEE
Confidence 77766543 1222111 12345777788777778876654 344566667777777776553 2 3433
Q ss_pred Eecc----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCH
Q 012138 375 VRGR----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISS 427 (470)
Q Consensus 375 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~ 427 (470)
..+. +.++.+.+.. .+...+...|.++||.++.+. .+.+|+++...+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~ 359 (382)
T TIGR03403 284 VGDREHRVPNTILISIKG----VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTE 359 (382)
T ss_pred ECCCCCCcCCEEEEEeCC----CCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCH
Confidence 3221 3455555542 256788888989999998431 25799999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCC
Q 012138 428 NELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~~~ 448 (470)
+||+++++.|+++++ +++.+
T Consensus 360 ~did~~~~~l~~~~~-~~~~~ 379 (382)
T TIGR03403 360 EEIDYTIEVFKKAVQ-RLRAI 379 (382)
T ss_pred HHHHHHHHHHHHHHH-HHHhh
Confidence 999999999999998 76643
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=182.28 Aligned_cols=342 Identities=19% Similarity=0.225 Sum_probs=239.9
Q ss_pred EEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHcccc---CCCCC--CCcHHHHHHHHhhhhCCC
Q 012138 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLS---SRAFY--NDKFPVFAERLTSMFGYD 133 (470)
Q Consensus 60 ~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~l~~~~~~~ 133 (470)
+++..-+..++ .||+.+++|.+. +.+|. .++++.+.+...+++++.+ +++|+ .+.+.+++++|++++|.+
T Consensus 80 v~e~~~~~~~~-i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E 155 (467)
T KOG1358|consen 80 VLESVMLPHVT-IDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTE 155 (467)
T ss_pred ccccccCCceE-ecCceeecccch---hhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCc
Confidence 35555566655 799999999876 33333 6789999999999987543 45554 567899999999999999
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHH
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 213 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 213 (470)
..++.+-|..+++.++.+..+ .|| +|++.+.. +-....++.++. ..+..|.|||+++
T Consensus 156 ~aivYs~gF~ti~S~ipafsK---------rGD-Ii~~de~~-nfaIq~GlqlSR------------S~i~~Fkhndm~~ 212 (467)
T KOG1358|consen 156 DAIVYSYGFSTIESAIPAFSK---------RGD-IIFVDEAV-NFAIQKGLQLSR------------STISYFKHNDMED 212 (467)
T ss_pred ceeeeccccchhhhcchhhhc---------cCc-EEEEehhh-hHHHHHHHhhhh------------heeEEecCCCHHH
Confidence 988888999999999987755 244 55554433 433444443333 2256889999999
Q ss_pred HHHHHHhcC------C---C-eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCcccccc
Q 012138 214 LEKIFKESG------D---Q-IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDW 281 (470)
Q Consensus 214 Le~~l~~~~------~---~-~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~ 281 (470)
||+.+.+.. + . -+-|++|.+.-++|.+.| +++|+++..||...+|.||.++ | +|++|++. .+|
T Consensus 213 lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGv-teH 287 (467)
T KOG1358|consen 213 LERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGV-TEH 287 (467)
T ss_pred HHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccccccccccCccc-ccc
Confidence 998876531 1 2 235569999999999999 9999999999999999999998 4 67888876 688
Q ss_pred CCCC---cceeecc--cccc--CCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh-hhHHHHHH
Q 012138 282 EEVR---PDMVILG--KALG--GGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD-EKLAERSA 351 (470)
Q Consensus 282 ~~~~---pdi~s~s--K~l~--gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~-~~~~~~~~ 351 (470)
+++. .|+++.| -+++ ||+ .+++.-+.+.-+-...+..|+ .+|....+|..+++.+++ +++.+.++
T Consensus 288 ~~v~~~~iDiv~~sm~~alas~GgF-----c~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~ 362 (467)
T KOG1358|consen 288 FGVPITDIDIVTASMETALASGGGF-----CAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLR 362 (467)
T ss_pred CCCCccceeeeeecccccccccCce-----eecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhh
Confidence 8875 3555544 3444 443 556665555555445556665 677777888888887776 56777777
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccCC----------CCE
Q 012138 352 HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTH----------DTI 416 (470)
Q Consensus 352 ~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~----------~~~ 416 (470)
.....+...|..... ....-.....+..+.+..... -.-.+++++.+..+|+++.... +..
T Consensus 363 ~k~~~~H~~l~~~s~----~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pS 438 (467)
T KOG1358|consen 363 AKVAKFHAALSSNSG----FIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPS 438 (467)
T ss_pred ccccccchhhhcCCc----eEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCc
Confidence 777777777766210 111112334444444433211 0124567777777788875321 568
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 417 VRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 417 iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+|++....+++||++++.+.|+++..
T Consensus 439 iri~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 439 IRICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998875
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=188.03 Aligned_cols=318 Identities=17% Similarity=0.155 Sum_probs=201.1
Q ss_pred CCHHHHHHHHHHHHHccccCC-CC------CCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccC
Q 012138 92 CHPKIMKALQEQAEKLTLSSR-AF------YNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKF 162 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~-~~------~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~ 162 (470)
.++.+.+++.+.++.+..... .. ......++++ + ++++ .++|+|++|+|+++..+++.+... +
T Consensus 39 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~-----~- 110 (406)
T TIGR01814 39 MPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKP-----T- 110 (406)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCC-----c-
Confidence 568888888887765432211 11 1122233333 4 5666 457999999999999988865320 0
Q ss_pred CCCCcEEEEEccCccccccchh---cccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 163 SIDEAIIVSCCGCFHGRTLAAI---SMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 163 ~~g~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+++..|++....|........ ...+... ... ...++. -|++++++.++...+++++|++++++
T Consensus 111 -~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~-~~~-------~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~ 181 (406)
T TIGR01814 111 -PKRYKILLEAKAFPSDHYAIESQLQLHGLTV-EES-------MVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQ 181 (406)
T ss_pred -CCccEEEecCCCCChHHHHHHHHHHhcCCCc-ccc-------eEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccc
Confidence 123366666666543222111 1111110 000 011111 17889998886544589999999999
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhh
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC 314 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~ 314 (470)
+.+|.+.| +++|.++|++||+++++|++|+ +|.. .+..+.++++..+.+..|.+.||. . |+++..++....
T Consensus 182 ~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~gvD~~~~s~hK~l~g~p-G-~~l~v~~~~~~~ 252 (406)
T TIGR01814 182 YYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWGVDFACWCTYKYLNAGP-G-AGAFVHEKHAHT 252 (406)
T ss_pred cccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCCCCEEEEcCccccCCCC-C-eEEEEehhhhhh
Confidence 99999998 9999999999999999999998 2211 123344555444446669998775 5 555544433333
Q ss_pred cCcCCcc-------------C----------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 315 IQPGEHG-------------S----------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 315 ~~~~~~~-------------~----------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
+.+...+ . ..+.|..+++++.++++.+.+ +.+.++.+.+.+++++.|+++....
T Consensus 253 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~ 332 (406)
T TIGR01814 253 ERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGP 332 (406)
T ss_pred cCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3331111 0 113566788888889998865 5677788888888888887642100
Q ss_pred CCceEEE-----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 012138 369 PNYVKEV-----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP-PLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 369 p~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l 441 (470)
| .+... ...+.++.+.++ . +..++.+.|.++||.+....++.+|++| ++.+|++||++++++|++++
T Consensus 333 ~-~~~i~~~~~~~~r~~~v~~~~~--~---~~~~~~~~L~~~gi~v~~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 333 P-VLTIITPRDHAQRGCQLSLTHP--V---PGKAVFQALIKRGVIGDKREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred C-ceEEeCCCChhhcCCeEEEEec--C---CHHHHHHHHHHCCEEEeccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 1 12111 123456666554 2 4678999999999998766567999999 68999999999999999876
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=187.78 Aligned_cols=312 Identities=14% Similarity=0.107 Sum_probs=198.7
Q ss_pred CCHHHHHHHHHHHHHccccCC--CCC-----CCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEKLTLSSR--AFY-----NDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~--~~~-----~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.++.+.+++.+.++....... .+. .....++++.++++++. ++|++++|+++++..++....+
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~------- 84 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLK------- 84 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccC-------
Confidence 567899999998876532111 111 13456788889998874 3799999999999998876433
Q ss_pred CCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
+|+ .|++....|.........+.........+.+... ... .|++++++++++ ++++|++..++||+|.+.
T Consensus 85 --~gd-~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~---~d~~~l~~~~~~---~~~~v~~~~~~n~tG~~~ 154 (376)
T TIGR01977 85 --EGD-HVITTPMEHNSVARPLECLKEQIGVEITIVKCDN-EGL---ISPERIKRAIKT---NTKLIVVSHASNVTGTIL 154 (376)
T ss_pred --CCC-EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCC---cCHHHHHHhcCC---CCeEEEEECCCCCccccC
Confidence 455 6666666643321111001000000000001100 011 279999998865 788888777799999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcceeEEEecHHH-HhhcCcC
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEV-MLCIQPG 318 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~~~~~~-~~~~~~~ 318 (470)
| +++|.++|++||+++|+|++|+ +|... +..... .+|+++ ..|.++++. ..|+++.+++. +..+..+
T Consensus 155 ~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~~~--~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~ 224 (376)
T TIGR01977 155 P----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMTEL--AIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSG 224 (376)
T ss_pred C----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCchhc--CCCEEEecccccccCCC-CceEEEEcCCcCcCceecC
Confidence 8 9999999999999999999997 22211 112223 347664 459887654 56777665543 1211111
Q ss_pred Cc----------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe---
Q 012138 319 EH----------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--- 376 (470)
Q Consensus 319 ~~----------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--- 376 (470)
.. ....+.+....++..++++.+.+ +.+.++.+++.+++.+.|+++. .+....
T Consensus 225 ~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~-----~~~~~~~~~ 299 (376)
T TIGR01977 225 GTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREIN-----KVKIYGPAD 299 (376)
T ss_pred CCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-----CeEEeCCCC
Confidence 00 00113556677777778888765 4567777888888888776532 122111
Q ss_pred --ccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC--------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 377 --GRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT--------------HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 377 --~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~--------------~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
..+.++.+.+.. .+..++.+.|.++ ||.+..+ ..+.+|+++...+|++|+++++++|++
T Consensus 300 ~~~~~~~v~~~~~~----~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 300 PANRVGVVSFTVEG----IDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ccccCCeEEEEECC----CCHHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 134566665532 2677899999988 9887643 247899999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=185.12 Aligned_cols=321 Identities=16% Similarity=0.126 Sum_probs=199.3
Q ss_pred CCHHHHHHHHHHH-HHccccCCC--C--CCCcHHHHHH----HHhhhhCCCeEE-ecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQA-EKLTLSSRA--F--YNDKFPVFAE----RLTSMFGYDMVL-PMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~-~~~~~~~~~--~--~~~~~~~l~~----~l~~~~~~~~v~-~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.||++++++...+ ++++.++.+ + -++...+|++ .+++++|.+.++ +++||+.|+.+++.++..
T Consensus 40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~------- 112 (416)
T PRK13034 40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLK------- 112 (416)
T ss_pred CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcC-------
Confidence 4899999999985 666543221 1 1466888998 999999988885 569999999999987754
Q ss_pred CCCCCcEEEEEccCccccccchhccc-CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc-cccCCCcc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE-PIQGEAGV 239 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e-pi~n~~G~ 239 (470)
+|+ .|++...++.+........+ ....+...+.+..+.... .|+++++++++.. ++++|+++ ++ .|.
T Consensus 113 --~GD-~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~--~~klVi~~~~~---~g~ 181 (416)
T PRK13034 113 --PGD-TILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGL---IDYDEVEELAKEH--KPKLIIAGFSA---YPR 181 (416)
T ss_pred --CCC-EEEEcCccceeeeecCCcceeccceeeeEEcccccccCC---cCHHHHHHHHhhc--CCeEEEECCCc---ccc
Confidence 566 77777666433122111111 000000000000000111 3899999998653 56888874 43 456
Q ss_pred ccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEecH-HHHhhc
Q 012138 240 IIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK-EVMLCI 315 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~-~~~~~~ 315 (470)
..| +++|.++|++||++||+|++|+ |....|... ...+ ..|++ +++|+++|+ ..|++++++ ++.+.+
T Consensus 182 ~~d----l~~l~~la~~~g~~livD~Aha~G~~~~g~~~--~~~~-~~Di~~~s~~K~l~g~--~GG~v~~~~~~~~~~~ 252 (416)
T PRK13034 182 ELD----FARFREIADEVGALLMVDMAHIAGLVAAGEHP--NPFP-HAHVVTTTTHKTLRGP--RGGMILTNDEEIAKKI 252 (416)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccCcccCCCC--CCCC-CceEEEEeCcccCCCC--CCeEEEECcHHHHHHH
Confidence 666 9999999999999999999998 432233211 1111 24655 677999754 335566654 444444
Q ss_pred CcCCccCCCC-CCHHHHH-HHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC
Q 012138 316 QPGEHGSTFG-GNPLASA-VAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 391 (470)
Q Consensus 316 ~~~~~~~t~~-~~~~~~a-aa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~ 391 (470)
+.....+..+ ..+...+ ++.+.++.++. .++++++.++.++|++.|++++-. ... ..+...+..+.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~---~~~-~~~~t~i~~v~~~~~~- 327 (416)
T PRK13034 253 NSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYD---LVS-GGTDNHLLLVDLRPKG- 327 (416)
T ss_pred HhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCE---ecc-CCCCCcEEEEEcCCCC-
Confidence 4322221111 2233333 33344444432 346789999999999998875321 111 0134556666555432
Q ss_pred chhHHHHHHHHHHcCceecc----------CCCCEEEEecCC----CCCHHHHHHHHHHHHHHHhcccC
Q 012138 392 PVSAYDICLKMKERGILAKP----------THDTIVRLTPPL----SISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 392 ~~~~~~~~~~l~~~Gv~~~~----------~~~~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.....+.+.|.++||++.+ ..+..+|++++. .++++|++++++.|.+++. +..
T Consensus 328 -~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~-~~~ 394 (416)
T PRK13034 328 -LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD-DLG 394 (416)
T ss_pred -CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh-cCC
Confidence 2556677888889999863 224579999887 7789999999999999998 653
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-20 Score=181.96 Aligned_cols=319 Identities=13% Similarity=0.152 Sum_probs=200.1
Q ss_pred CeEEeccCCcccccCCC--CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGH--CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
+.+||-...+ .++|. .++++.+++.+.++.+. ...+...++++++++++|.+++++++|+++|+.++++.+
T Consensus 8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al 80 (363)
T TIGR01437 8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQNYF-----EIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAV 80 (363)
T ss_pred ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHH
Confidence 3455544333 33444 48999999999876532 134567889999999999999999999999999999977
Q ss_pred HHhchhcccCCCCC--------------cEEEEEccCcccc--c-cchhcccC-CcccccCCCCCCCCeeeecCCCHHHH
Q 012138 153 RKWGYVKKKFSIDE--------------AIIVSCCGCFHGR--T-LAAISMSC-DNEAIRGFGPLLPGHLKVDFGDITAL 214 (470)
Q Consensus 153 ~~~~~~~~~~~~g~--------------~~ii~~~~~yhg~--~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~L 214 (470)
.. +|+ +.||+..+.|... . ...+.+.+ .+.+ .+. + .. -|++++
T Consensus 81 ~~---------~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~----v~~--~-~~---~d~~~l 141 (363)
T TIGR01437 81 IT---------RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVE----AGY--A-NE---CSAEQL 141 (363)
T ss_pred hc---------CCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEE----EcC--C-CC---CCHHHH
Confidence 54 343 1455555444322 1 11222222 1111 000 0 01 289999
Q ss_pred HHHHHhcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--ec
Q 012138 215 EKIFKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--IL 291 (470)
Q Consensus 215 e~~l~~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~ 291 (470)
++++++ ++++++ ++..+|++|.+.| +++|.++|++||+++|+|++|+. ... ....++ .|++ ++
T Consensus 142 e~ai~~---~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~~---~~~--~~~~~g--~D~~~~S~ 207 (363)
T TIGR01437 142 EAAITE---KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAEE---DLQ--KYYRLG--ADLVIYSG 207 (363)
T ss_pred HHhcCh---hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCCC---chH--HHHHcC--CCEEEEeC
Confidence 999986 677766 5655889999997 99999999999999999999971 111 011223 3666 45
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
+|.++ |. +.|++++++++++.+....++ ..+......+++..++++.+.+ .+..+...++.+++.+.|.++.
T Consensus 208 ~K~l~-gp-~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i~-- 283 (363)
T TIGR01437 208 AKAIE-GP-TSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNTLK-- 283 (363)
T ss_pred CcccC-CC-ceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhcCC--
Confidence 58886 44 789988888888766432221 1122222344555556666543 2333444445566777776642
Q ss_pred CCCceEEE---eccce---eEEEEeccCCCchhHHHHHHHHHHcC--ceecc--CCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 368 FPNYVKEV---RGRGL---FNAVEFDKTALPVSAYDICLKMKERG--ILAKP--THDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 368 ~p~~~~~~---~~~g~---~~~~~~~~~~~~~~~~~~~~~l~~~G--v~~~~--~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.+... ...+. ...+.++....+.+..++.+.|.++| |.+.+ ...+.+||.+.. .+++|++.++++|
T Consensus 284 ---g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l 359 (363)
T TIGR01437 284 ---GVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERI 359 (363)
T ss_pred ---CeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHH
Confidence 22222 11111 12233433111347899999999877 66653 357789999874 6699999999999
Q ss_pred HHHH
Q 012138 438 HDVL 441 (470)
Q Consensus 438 ~~~l 441 (470)
++++
T Consensus 360 ~~~~ 363 (363)
T TIGR01437 360 REIV 363 (363)
T ss_pred HHhC
Confidence 8764
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=193.28 Aligned_cols=243 Identities=10% Similarity=0.103 Sum_probs=166.9
Q ss_pred CCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHH-HhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 116 NDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLAR-KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~-~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
.++++.+++++.+..| .++|++|+|+++++..+++++. . +|+ .|++..|+|..........+...
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~---------pGd-~Vli~~P~Y~~y~~~~~~~g~~~ 179 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRG---------EKD-GVLVPVPQYPLYSATISLLGGTL 179 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCC---------CCC-EEEEeCCCCccHHHHHHHcCCEE
Confidence 4567777777776544 4689999999999999998775 3 455 78889999976654443333221
Q ss_pred ccccCCCCCCC-CeeeecCCCHHHHHHHHHhc---CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 191 EAIRGFGPLLP-GHLKVDFGDITALEKIFKES---GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~---~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
.. . +... +.+.+ |+++|++.+++. ..++++++ ++| +||||.++ +.+.+++|.++|++||++||+||
T Consensus 180 v~-v---~~~~~~~~~~---d~~~le~~i~~~~~~~~~~k~l~l~nP-~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE 250 (407)
T PLN02368 180 VP-Y---YLEESENWGL---DVNNLRQSVAQARSKGITVRAMVIINP-GNPTGQCL-SEANLREILKFCYQERLVLLGDE 250 (407)
T ss_pred EE-E---ecccccCCCC---CHHHHHHHHHHHhhcCCCeEEEEEECC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEc
Confidence 10 0 1111 01122 799999998742 12577555 677 99999999 99999999999999999999999
Q ss_pred cccCCcccCC--cccc-c---cCC--C--Ccce---eeccccc-c-CCCcceeEEE---ecHHHHhhcCcCCccCCCCCC
Q 012138 266 IQSGLARSGR--MLAS-D---WEE--V--RPDM---VILGKAL-G-GGVIPVSAVL---ADKEVMLCIQPGEHGSTFGGN 327 (470)
Q Consensus 266 v~~g~g~~G~--~~~~-~---~~~--~--~pdi---~s~sK~l-~-gG~~~ig~v~---~~~~~~~~~~~~~~~~t~~~~ 327 (470)
+|..+.+.+. .... + ..+ . .+.+ -+|||++ + +|+ |+||++ +++++++.+.... ..+++.+
T Consensus 251 ~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~Gl-RiGy~i~~~~~~~li~~~~~~~-~~~~~~~ 328 (407)
T PLN02368 251 VYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ-RGGYFEMTNIPPKTVEEIYKVA-SIALSPN 328 (407)
T ss_pred cccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCcc-ceEEEEEeCCCHHHHHHHHHHh-cccCCCC
Confidence 9998765542 2111 1 010 0 1122 3889998 4 899 999998 4888888876542 3456778
Q ss_pred HHHHHHHHHHHHH-----------Hhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 328 PLASAVAIASLDV-----------IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 328 ~~~~aaa~a~l~~-----------~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
.+++.++.++|+. .++ .++.+.++++++.+.+.|+++ +.+....++|.|+.|
T Consensus 329 ~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~-----~g~~~~~P~Gafy~~ 392 (407)
T PLN02368 329 VSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC-----KNVVCNFTEGAMYSF 392 (407)
T ss_pred cHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEeCCCCeeeEec
Confidence 8888888888752 111 235566677777777777664 246667789999888
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=184.88 Aligned_cols=318 Identities=12% Similarity=0.065 Sum_probs=201.7
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
..+.+.+++.+.. .+.... +.+...++.+.++++++. +.+++++||+++++.++..+.. +++
T Consensus 16 ~~~~~~~a~~~~~---~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~---------~~~- 81 (368)
T PRK13479 16 TSRTVREAMLRDW---GSWDDD-FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP---------RDG- 81 (368)
T ss_pred CCHHHHHHhCCCC---CCCChH-HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC---------CCC-
Confidence 4567777665543 111111 224567888888888865 3478999999999999987753 455
Q ss_pred EEEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 168 IIVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 168 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.+++..++|.+... ......+.... ..+...+ .. .|+++++++++++ .++++|++..++|++|.+.|
T Consensus 82 ~vlv~~~~~~~~~~~~~~~~~g~~~~---~i~~~~~-~~---~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~---- 149 (368)
T PRK13479 82 KVLVPDNGAYGARIAQIAEYLGIAHV---VLDTGED-EP---PDAAEVEAALAAD-PRITHVALVHCETTTGILNP---- 149 (368)
T ss_pred eEEEEeCCchHHHHHHHHHHcCCcEE---EEECCCC-CC---CCHHHHHHHHHhC-CCCcEEEEEcccCccccccC----
Confidence 44444445444321 11111111111 0111000 11 2799999998753 24566665555999999998
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCC-----
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE----- 319 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~----- 319 (470)
+++|.++|+++|+++|+|++|+ +|.. ......++ +|++ +++|++.|+. ++|++++++++++.+....
T Consensus 150 ~~~i~~l~~~~~~~livDa~~~-~g~~--~~~~~~~~--~d~~v~s~~K~l~g~~-G~G~l~~~~~~~~~~~~~~~~~~~ 223 (368)
T PRK13479 150 LDEIAAVAKRHGKRLIVDAMSS-FGAI--PIDIAELG--IDALISSANKCIEGVP-GFGFVIARRSELEACKGNSRSLSL 223 (368)
T ss_pred HHHHHHHHHHcCCEEEEEcccc-cCCc--cccccccC--ceEEEecCccccccCC-CceEEEECHHHHHHhhcCCCCeee
Confidence 9999999999999999998774 5422 22233333 4554 6779887665 6799999999887765432
Q ss_pred ------------ccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 320 ------------HGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 320 ------------~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
....|+.+....+++.++++.+.+ ++..++++++++++++.|++++... ........+....
T Consensus 224 ~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~ 301 (368)
T PRK13479 224 DLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEP--LLDAEIQSPIIVT 301 (368)
T ss_pred cHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCchhcCceEEE
Confidence 112246777777777788887643 3455677777888888877753221 0110001122233
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+.... +.+..++.++|.++||.+.++. .+.+|++....+++++++++++.|+++++ ++
T Consensus 302 ~~~~~~~-~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~-~~ 364 (368)
T PRK13479 302 FHAPADP-AYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALY-WM 364 (368)
T ss_pred EECCCCC-CcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence 3233221 1256789999999999998753 45899986556799999999999999998 65
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=186.64 Aligned_cols=330 Identities=13% Similarity=0.171 Sum_probs=203.8
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-------CCcHHHHHHHHhhhhCC--CeEEecCChhHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-------NDKFPVFAERLTSMFGY--DMVLPMNTGAEGV 145 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~ 145 (470)
+.|+|..+. +..++.+.+++.+.++.....+.... .+..+++++.+++++|. +.++|++|+++++
T Consensus 4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN 77 (402)
T ss_pred cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence 468887654 22578999999888754322211111 12355677888888875 4799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
+.+++.+... ... +++ .|++.... |.+................+.+..++ ..+ |+++|++++++ ++
T Consensus 78 ~~~l~~l~~~-~~~----~g~-~Vi~~~~~-h~s~~~~~~~~~~~g~~v~~v~~~~~-~~~---d~~~l~~~l~~---~~ 143 (402)
T TIGR02006 78 NLAIKGIAHF-YKS----KGN-HIITSKTE-HKAVLDTCRYLEREGFEVTYLPPKSN-GLI---DLEELKAAIRD---DT 143 (402)
T ss_pred HHHHHHHHHh-hcC----CCC-EEEECCCc-cHHHHHHHHHHHhcCCEEEEEccCCC-CcC---CHHHHHHhcCC---CC
Confidence 9998866431 011 344 66666655 44433222110000111101111111 111 78999998865 67
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig 303 (470)
++|++..++|++|.+.| +++|.++|++||+++++|++|+ +|.. . ++..+..+|++++| |.++ .. .+|
T Consensus 144 ~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~--~--~~~~~~~~D~~~~s~~K~~g-p~-G~G 212 (402)
T TIGR02006 144 ILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI--P--INVNELKVDLMSISGHKIYG-PK-GIG 212 (402)
T ss_pred EEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc--c--cCccccCCCEEEEehhhhcC-CC-ceE
Confidence 88888888999999998 9999999999999999999997 2211 1 22223456888888 9664 33 688
Q ss_pred EEEecHHHHhhcCcCCcc-------CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 304 AVLADKEVMLCIQPGEHG-------STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+++.+++....+.+...+ ...+.+...+.+..++++.+.+ +...++.+++.+++.+.|+++. .+..
T Consensus 213 ~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-----~v~~ 287 (402)
T TIGR02006 213 ALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIE-----EVYL 287 (402)
T ss_pred EEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-----CEEE
Confidence 888887655444433222 1124566677777788887654 3455667777777777776532 2221
Q ss_pred E---ecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-----------------------CCCEEEEecCCCCCH
Q 012138 375 V---RGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-----------------------HDTIVRLTPPLSISS 427 (470)
Q Consensus 375 ~---~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------------------~~~~iR~~~~~~~t~ 427 (470)
. ... ...+.+.+.. ....++...| +++.+..+ ..+.+|+++...+|+
T Consensus 288 ~~~~~~~~p~~~~v~f~~----~~~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~ 361 (402)
T TIGR02006 288 NGDLEHRVPGNLNVSFNY----VEGESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTE 361 (402)
T ss_pred eCCccccCCCeEEEEEeC----cCHHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCH
Confidence 1 101 1111232332 1344555554 35543321 137899999999999
Q ss_pred HHHHHHHHHHHHHHhcccCC
Q 012138 428 NELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~~ 447 (470)
+||+++++.|.++++ +++.
T Consensus 362 edid~l~~~l~~~~~-~~~~ 380 (402)
T TIGR02006 362 EEIDYAVKLVKSAID-KLRE 380 (402)
T ss_pred HHHHHHHHHHHHHHH-HHHh
Confidence 999999999999998 7654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=187.17 Aligned_cols=318 Identities=17% Similarity=0.133 Sum_probs=209.5
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.+++|++++.+... .+.. ....+.+++++++++++++. +.++++++|+++++.++..... +|+ .
T Consensus 20 ~~~~V~~a~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~---------~Gd-~ 86 (401)
T PLN02409 20 IPERVLRAMNRPNE--DHRS-PAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS---------PGD-K 86 (401)
T ss_pred CCHHHHHHhcCCCC--CCCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC---------CCC-E
Confidence 45777777644321 1111 11234567788888888764 3589999999999999876543 566 5
Q ss_pred EEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhh
Q 012138 169 IVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 169 ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
|++.+++|.+.... .....+.... +.+...+ ..+ |++++++++++.. .++++|++..+.|++|.+.|
T Consensus 87 Vlv~~~~~~~~~~~~~~~~~g~~v~---~v~~~~~-~~~---~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~---- 155 (401)
T PLN02409 87 VVSFRIGQFSLLWIDQMQRLNFDVD---VVESPWG-QGA---DLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND---- 155 (401)
T ss_pred EEEeCCCchhHHHHHHHHHcCCceE---EEECCCC-CCC---CHHHHHHHHhhCcCCCccEEEEEeecccccccCC----
Confidence 66666665443321 1111111100 0011000 011 7899999998621 26888888887999999997
Q ss_pred HHHHHHH--HHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCc--
Q 012138 247 LKAVRDL--CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-- 320 (470)
Q Consensus 247 l~~l~~l--~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~-- 320 (470)
+++|.++ |+++|+++|+|++|+ +|. ..+..+.+++ |++ +.+|+++++. ++|+++.++++++.+.+...
T Consensus 156 ~~~i~~l~~~~~~g~~~vvD~v~s-~g~--~~id~~~~~~--D~~~~s~~K~l~~P~-G~G~l~~~~~~~~~~~~~~~~~ 229 (401)
T PLN02409 156 LAGVRKLLDCAQHPALLLVDGVSS-IGA--LDFRMDEWGV--DVALTGSQKALSLPT-GLGIVCASPKALEASKTAKSPR 229 (401)
T ss_pred HHHHHHHHhhhccCcEEEEEcccc-cCC--ccccccccCc--cEEEEcCccccCcCC-CcceeEECHHHHHHHhcCCCCC
Confidence 8888888 999999999999997 321 1122333444 555 5569998776 89999999998877643210
Q ss_pred -------------cC---CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-e-ccc
Q 012138 321 -------------GS---TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-R-GRG 379 (470)
Q Consensus 321 -------------~~---t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~-~~g 379 (470)
.. .++.+...+.++.++++.+.+ +.+.++.+++.+++++.|++++.. .+... . ..+
T Consensus 230 ~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~---~~~~~~~~~s~ 306 (401)
T PLN02409 230 VFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLK---LCTKKPEWRSD 306 (401)
T ss_pred eecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCe---eccCChhhccc
Confidence 11 335667778888888888655 567788888888888888775322 11110 1 122
Q ss_pred eeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+.++.+... .+..++.+.|.++ |+.+.++ .+..+|++....++++++..++++|++++. ++.
T Consensus 307 ~v~~~~~p~~---~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~-~~g 374 (401)
T PLN02409 307 TVTAVVVPEG---IDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLK-DVG 374 (401)
T ss_pred ceEEEeCCCC---CCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHH-HcC
Confidence 3344444332 3667888887654 9998865 367899999989999999999999999999 765
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=181.29 Aligned_cols=311 Identities=15% Similarity=0.117 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHHccccCCCCC--CCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFY--NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
++|.+.+++...++.....+..+. .+...++++++++++|.+ .+++++||++++..++.++.......+ +|+
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~g~- 107 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEK---RTP- 107 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccC---CCc-
Confidence 567778877776544221122121 234578889999999864 578899999999998876653211100 233
Q ss_pred EEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCe-EEEEEccccCCCcccc
Q 012138 168 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQI-AGFLFEPIQGEAGVII 241 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~-~~vi~epi~n~~G~~~ 241 (470)
.|++.+++|... .......+-. +..+++ .|+++|++++++ ++ +++++.| +|++|.+.
T Consensus 108 ~vl~~~~~h~~~-~~~~~~~G~~------------~~~v~~~~~~~~d~~~l~~~l~~---~~~~vv~~~~-~~~tG~~~ 170 (373)
T TIGR03812 108 NIIVPESAHFSF-EKAAEMLGLE------------LRYAPLDEDYTVDVKDVEDLIDD---NTIGIVGIAG-TTELGQID 170 (373)
T ss_pred EEEECCcchHHH-HHHHHHcCCe------------EEEEeeCCCCCcCHHHHHHHHhh---CcEEEEEECC-CCCCCccC
Confidence 677777775432 2222222211 122222 289999999976 44 4555666 89999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCccc----CCc-cccccCCCCcceeecc--ccccCCCcceeEEE-ecHHHHh
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARS----GRM-LASDWEEVRPDMVILG--KALGGGVIPVSAVL-ADKEVML 313 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~----G~~-~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~-~~~~~~~ 313 (470)
| +++|.++|++||+++|+|++|+++... |.. ...+..-...|.++++ |...++. |.|+++ .++++++
T Consensus 171 ~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~-~~G~~~~~~~~~~~ 245 (373)
T TIGR03812 171 D----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPI-PAGGILFRSKSYLK 245 (373)
T ss_pred C----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcC-CceEEEEeCHHHHh
Confidence 8 999999999999999999999853210 000 0011110123555443 7444555 787655 6777777
Q ss_pred hcCcCC---ccC-----CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 314 CIQPGE---HGS-----TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 314 ~~~~~~---~~~-----t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
.+.... ... ..+.+...++++.++++.+.+ +++.++..++++++++.|++++ ......+...++
T Consensus 246 ~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~v 320 (373)
T TIGR03812 246 YLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIG-----FEPVIEPVLNIV 320 (373)
T ss_pred hhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-----CeEEcCCCceEE
Confidence 663211 010 013455677788888887755 3467888888888988888753 211223344455
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccC-CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.+.++ ...++.+.|.++||.+... .++++|++++..+|++|+++++++|++
T Consensus 321 ~~~~~------~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 321 AFEVD------DPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred EEEeC------CHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 55433 2457999999999999866 467999999888999999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=189.11 Aligned_cols=288 Identities=17% Similarity=0.173 Sum_probs=193.0
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...+|++.++++.|.+.+++++||++|+..++..+.. +|+ .|++..+.|++...........
T Consensus 37 ~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~---------~gd-~Vl~~~~~y~~~~~~~~~~~~~---- 102 (369)
T cd00614 37 IGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLK---------AGD-HVVASDDLYGGTYRLFERLLPK---- 102 (369)
T ss_pred CCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcC---------CCC-EEEECCCCcchHHHHHHHHHhh----
Confidence 45778899999999999988999999999999999987754 455 6777778876543211100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
....+..++.+|++++++++++ ++++|++|.++||+|.+.| +++|.++|++||+++|+|++++....
T Consensus 103 -----~g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~~~~- 169 (369)
T cd00614 103 -----LGIEVTFVDPDDPEALEAAIKP---ETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFATPYL- 169 (369)
T ss_pred -----cCeEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcchhc-
Confidence 0012456677789999999875 7899999999999999998 99999999999999999999873211
Q ss_pred CCccccccCCCCccee--eccccccC-C-CcceeEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G-~~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
. .......|++ |++|.++| | . +.|++++++ ++++.++..........+++.++++...|+.+ +...+
T Consensus 170 ~-----~~~~~g~Divv~S~tK~l~g~~~~-~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~ 241 (369)
T cd00614 170 Q-----RPLELGADIVVHSATKYIGGHSDV-IAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRME 241 (369)
T ss_pred C-----ChhhhCCcEEEeccceeccCCCCc-eEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHH
Confidence 1 1112234665 88899985 3 4 789999977 88777764433334456788777776666533 23456
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec-----
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----- 410 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----- 410 (470)
+..++..++.+.|++... .||.... ...+.|.++.+.+..+. ....+|.+.|+--.+.++
T Consensus 242 ~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~--~~~~~f~~~l~~~~~~~s~G~~~ 319 (369)
T cd00614 242 RHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGL--EAAKKFLNALKLFSLAVSLGGVE 319 (369)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCH--HHHHHHHHcCCcceEcccCCCCc
Confidence 666677777777766431 1221000 12356889999886321 245556555542211110
Q ss_pred -----cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -----PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -----~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.+|+++.+ |+.+++++.|.++++
T Consensus 320 sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al~ 369 (369)
T cd00614 320 SLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQALK 369 (369)
T ss_pred eeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhhC
Confidence 10 14689999655 678888888887763
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=163.98 Aligned_cols=308 Identities=14% Similarity=0.201 Sum_probs=195.9
Q ss_pred CCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 115 YNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
...+...+++.+.+.+|+ +.+.+||+...|-..+..++.. ++..| ..+++++...|.|-|.....+. +
T Consensus 76 ~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G--~~sdG--~~k~illPLaPeYiGY~d~~l~----~ 147 (417)
T COG3977 76 KAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAG--RRSDG--TEKKILLPLAPEYIGYADAGLE----E 147 (417)
T ss_pred hhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcC--ccCCC--cceeEeeccChhhccccccccC----c
Confidence 345577888888888875 4699999988888887776643 33322 2234555688888776443321 1
Q ss_pred ccccCCCC---CCCCeeeecC-CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecc
Q 012138 191 EAIRGFGP---LLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266 (470)
Q Consensus 191 ~~~~~~~~---~~~~~~~~~~-~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev 266 (470)
.....+.| ..+ -..++| -|.++|+ +. +.+.+|++.-+.||||.+. +.+++.+|-.+|++||++||+|.+
T Consensus 148 d~fVs~kP~iel~~-~g~FKY~vDF~~l~--i~---e~~g~ic~SRPtNPTGNVl-TdeE~~kldalA~~~giPliIDnA 220 (417)
T COG3977 148 DLFVSAKPNIELLP-AGQFKYHVDFEHLH--IG---ESTGAICVSRPTNPTGNVL-TDEELAKLDALARQHGIPLIIDNA 220 (417)
T ss_pred cceeeccCCccccc-ccceeeccCHHHcc--cc---cccceEEecCCCCCCCCcc-cHHHHHHHHHHhhhcCCcEEEecc
Confidence 11111111 111 122232 2777764 22 3789999888899999999 999999999999999999999999
Q ss_pred ccCCcccCCccccccCCCCccee---eccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH---
Q 012138 267 QSGLARSGRMLASDWEEVRPDMV---ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV--- 340 (470)
Q Consensus 267 ~~g~g~~G~~~~~~~~~~~pdi~---s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--- 340 (470)
|+ .-+.+-.|.-...-..++++ |+||.--+|. |+|.++++++++..+.+...--......++.|.+...++.
T Consensus 221 Yg-~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~-R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl 298 (417)
T COG3977 221 YG-VPFPGIIFSDATPLWNENIILCMSLSKLGLPGS-RCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDL 298 (417)
T ss_pred cC-CCCCceecccccccCCCCEEEEeehhhcCCCCc-ceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchH
Confidence 97 21233223111111133443 6777655787 9999999999999887653322233333344444333321
Q ss_pred --HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----
Q 012138 341 --IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----- 413 (470)
Q Consensus 341 --~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----- 413 (470)
+.++-++.-+++..+.....|+.-...+| ....+++|.++.| +...+.+.+.+++.++|+++||++.|++
T Consensus 299 ~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~--~~iHkpEGAIFlW-LWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpG 375 (417)
T COG3977 299 LRLSEQVIRPFYRNRVQTTIAILRRYLPEYR--CLIHKPEGAIFLW-LWFKDLPITTEELYQRLKARGVLMVPGHYFFPG 375 (417)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcCccc--eeeecCCcceeeh-hhhccCCCCHHHHHHHHHhCeEEEecccccCCC
Confidence 11111222223333333333332222222 4456889998888 5444445689999999999999999874
Q ss_pred --------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 414 --------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 414 --------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
..++|++ ++-++++|+..+.+|.+.++ +.
T Consensus 376 l~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~ve-~~ 412 (417)
T COG3977 376 LDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEVE-RA 412 (417)
T ss_pred CCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHHH-HH
Confidence 5789999 88999999999999999887 53
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=180.18 Aligned_cols=309 Identities=20% Similarity=0.268 Sum_probs=216.7
Q ss_pred CCCCCHHHHHHHHHHHHHccccC---C--CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCC
Q 012138 89 QGHCHPKIMKALQEQAEKLTLSS---R--AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~~---~--~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
.|.+++.+.+++ +++++.. + ....+.+.++++..+++.|.+..+.++-|...|.+-+..+..
T Consensus 153 ~g~ca~~~~~~~----~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~--------- 219 (519)
T KOG1357|consen 153 VGPCAEASLKSF----DKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLG--------- 219 (519)
T ss_pred CCcCChHHHHHH----HHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeec---------
Confidence 344555555554 4444332 1 235677899999999999999888888888888777775553
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc----------CCCeEEEEEccc
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES----------GDQIAGFLFEPI 233 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~----------~~~~~~vi~epi 233 (470)
+ ...|++.+-+ |++......+++. .+..++|||+.+||++|++. +.+.-.|++|.+
T Consensus 220 ~-gsLIiSDelN-HaSi~~GaRLSgA------------tiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegi 285 (519)
T KOG1357|consen 220 K-GSLIISDELN-HASLITGARLSGA------------TTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGI 285 (519)
T ss_pred C-Ccceeecccc-chheeccccccCc------------eEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccc
Confidence 3 3477887777 9888887777763 24688999999999999873 123446778999
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCCCc---cee--ecccccc--CCCcceeE
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVRP---DMV--ILGKALG--GGVIPVSA 304 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~~p---di~--s~sK~l~--gG~~~ig~ 304 (470)
.++.|.+.. +++++.+++||.++|+.||+|+ | .|++|+.. ++.++++| |++ +|.|+++ || +
T Consensus 286 ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgv-ce~~g~d~~dvDImMGtftKSfga~GG-----y 355 (519)
T KOG1357|consen 286 YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGV-CEYFGVDPEDVDIMMGTFTKSFGAAGG-----Y 355 (519)
T ss_pred eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCcce-eeccCCCchhheeecceehhhcccccc-----e
Confidence 999999998 9999999999999999999999 4 66788764 67777754 444 8889987 44 4
Q ss_pred EEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 305 VLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD-------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~-------~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+.+++++++.++.......+. .+|+.+.-...+++.+.- ....+++.++..+++..|+..+ ++..-
T Consensus 356 iagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~g-----fivyG 430 (519)
T KOG1357|consen 356 IAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMG-----FIVYG 430 (519)
T ss_pred ecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCc-----EEEec
Confidence 899999999998665555543 455555555566666542 3456677778888887777642 12111
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHcCceec----cC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----PT---HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
........+.+-.+. .-..+.+.|+++++.+. |. -....||+.+..++.|+++++++.+.+.=+
T Consensus 431 ~~dSpVvplll~~~~---k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~ 501 (519)
T KOG1357|consen 431 NNDSPVVPLLLYGPA---KIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD 501 (519)
T ss_pred CCCCCcceeeecCcc---cccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence 111211222121221 45567888888865543 22 246779999999999999999998877654
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-20 Score=181.35 Aligned_cols=309 Identities=16% Similarity=0.227 Sum_probs=208.3
Q ss_pred CCCHHHHHHHHHHHHHccccC-CCC------CCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 91 HCHPKIMKALQEQAEKLTLSS-RAF------YNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~-~~~------~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
..++.|.+++.+.+......+ ... ..+..+++.+.++++++. +.|+|++|++++++.++..+... .
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~-~--- 85 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP-L--- 85 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH-G---
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc-c---
Confidence 367899999999887654322 111 123345777888888864 45999999999999999977431 0
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHhcCCCeEEEEEccccCCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEA 237 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~~~~~~~~vi~epi~n~~ 237 (470)
++++ .|++....|++.......+......... ....+. -|++++++.++. ++++|++..+.+.+
T Consensus 86 --~~g~-~vl~~~~~~~s~~~~~~~~~~~~g~~v~-------~i~~~~~~~~~~~~~~~~l~~---~~~lv~~~~~~~~t 152 (371)
T PF00266_consen 86 --KPGD-EVLVTSNEHPSNRYPWEEIAKRKGAEVR-------VIPADPGGSLDLEDLEEALNP---DTRLVSISHVENST 152 (371)
T ss_dssp --TTTC-EEEEEESSHHHHHHHHHHHHHHTTEEEE-------EEEEGTTSSCSHHHHHHHHHT---TESEEEEESBETTT
T ss_pred --cccc-ccccccccccccccccccccccchhhhc-------cccccccchhhhhhhhhhhcc---ccceEEeecccccc
Confidence 1344 7777777765544221111100001000 011111 178999999975 89999999989999
Q ss_pred ccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhc
Q 012138 238 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCI 315 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~ 315 (470)
|...| +++|.++|+++|+++++|.+|+ +|.. .+.++. ..+|++++| | +.|+. .+|+++.+++..+.+
T Consensus 153 G~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~--~id~~~--~~~D~~~~s~~K-l~gp~-G~g~l~v~~~~~~~~ 221 (371)
T PF00266_consen 153 GVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV--PIDLDE--LGADFLVFSSHK-LGGPP-GLGFLYVRPEAIERL 221 (371)
T ss_dssp TBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS--S--TTT--TTESEEEEESTS-TTSSS-TEEEEEEEHHHHHHH
T ss_pred cEEee----eceehhhhhccCCceeEechhc-cccc--cccccc--cccceeeecccc-cCCCC-chhhheehhhhhhcc
Confidence 99999 9999999999999999999998 3211 122333 345777655 9 88886 899999999998888
Q ss_pred CcCCccCC------------------C---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 316 QPGEHGST------------------F---GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 316 ~~~~~~~t------------------~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
++...+.. | +.+.....+...+++.+.+ +.+.++..++.+++.+.|.++.... .
T Consensus 222 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~--~ 299 (371)
T PF00266_consen 222 RPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIE--V 299 (371)
T ss_dssp HTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE--E
T ss_pred ccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCcee--E
Confidence 54322221 1 3566677777788888754 5677778888888888887753210 0
Q ss_pred e--EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEecCCCCCHHHHHHH
Q 012138 372 V--KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 372 ~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~~~~~t~e~i~~~ 433 (470)
+ ......+.++.+.+.. .+...+.+.|.++||.+..+. .+.+|+++...+|++||+++
T Consensus 300 ~~~~~~~~~~~i~~~~~~~----~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 300 LGPDDEPRRPSIVSFNLPG----SDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp SSSSCGGBGTTEEEEEETT----SSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred eeecccccccceEEEeecC----CCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 0 1123456677776743 267899999999999988642 37999999999999999975
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=187.39 Aligned_cols=294 Identities=12% Similarity=0.128 Sum_probs=188.9
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...+|+++++++.|.+.+++++||++|+..++..+.+ +|+ .|++..+.|.+...........
T Consensus 73 ~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~~---------~GD-~Vl~~~~~Y~~~~~~~~~~~~~---- 138 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCS---------SGG-HVVASNTLYGGTHALLAHFLPR---- 138 (418)
T ss_pred CCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC---------CCC-EEEEcCCcHHHHHHHHHHhhhh----
Confidence 45778899999999999999999999999999999987765 566 6777777764332111000000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
........++..|++++++++++. ++++|+++.++||+|.+.+ +++|.++|++||++||+||+|+.+...
T Consensus 139 ----~~G~~~~~~d~~d~e~l~~~i~~~--~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~~~ 208 (418)
T PLN02242 139 ----KCNITTTFVDITDLEAVKKAVVPG--KTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMVLS 208 (418)
T ss_pred ----ccCceEEEcCCCCHHHHHHhcCcC--CCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccCCC
Confidence 000112344445899999988652 4899999898999999998 999999999999999999999744221
Q ss_pred CCccccccCCCCcceeeccccccC-CCcc-eeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhh-hhHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGG-GVIP-VSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRD-EKLAE 348 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~g-G~~~-ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~-~~~~~ 348 (470)
...++.+.-+.+|+|.+++ |. + .|++++++++++.+.....+ ..++..+..+.++...+. +.. +..++
T Consensus 209 -----~~~~g~divv~S~SK~l~g~g~-~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~-l~tl~~r~~ 281 (418)
T PLN02242 209 -----PARLGADVVVHSISKFISGGAD-IIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSER-LPHLSLRMK 281 (418)
T ss_pred -----HHHcCCcEEEEeCccccCCCCC-ceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcC-CCcHHHHHH
Confidence 1122332234488999984 55 5 58899999988887654332 122222223333332222 211 33556
Q ss_pred HHHHHHHHHHHHHHHHHh--hCCCce---------EEE---eccceeEEEEeccCCCchhHHHHHHHHHHc----Cceec
Q 012138 349 RSAHLGEELRQHLFKIQQ--QFPNYV---------KEV---RGRGLFNAVEFDKTALPVSAYDICLKMKER----GILAK 410 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~--~~p~~~---------~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----Gv~~~ 410 (470)
+.++++.++.+.|++... .||... ... .+.|.++.+++... ..+.+|++.|.-- .+.+.
T Consensus 282 ~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~---~~~~~f~~~l~~~~~~~~~~~s 358 (418)
T PLN02242 282 EHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTE---ERANRLMRYLQNSTQFGFMAVS 358 (418)
T ss_pred HHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCH---HHHHHHHHHhhcccccceeeec
Confidence 777788888888877531 222100 011 25688999988532 3567787777621 11111
Q ss_pred ----------cC-----------------CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhcccC
Q 012138 411 ----------PT-----------------HDTIVRLTPPLSISSNE-LQEGSKALHDVLELDLP 446 (470)
Q Consensus 411 ----------~~-----------------~~~~iR~~~~~~~t~e~-i~~~~~~l~~~l~~~~~ 446 (470)
|. .++.+||+..+ |+ .+.+++-|+++|+ +++
T Consensus 359 lG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~~dli~dl~~al~-~~~ 417 (418)
T PLN02242 359 LGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGY----TGTLEQRWSQFEKALS-AMK 417 (418)
T ss_pred CCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecC----CCCHHHHHHHHHHHHH-Hhh
Confidence 10 14689999544 53 7888888888887 653
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-20 Score=171.89 Aligned_cols=328 Identities=19% Similarity=0.206 Sum_probs=204.8
Q ss_pred EeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhch
Q 012138 78 LDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~ 157 (470)
+||.|....- ++|++++++.++-.... ......+...++++++++.++...++|+.|||+||..+|....+
T Consensus 2 ~~f~SDn~~g----~~~~m~eam~~a~~~~~--~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~--- 72 (342)
T COG2008 2 IDFRSDNVAG----PTPEMREALAAANAVGD--DVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQ--- 72 (342)
T ss_pred CccccCccCC----CCHHHHHHHHhccccCC--CCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcC---
Confidence 4666654332 68999999987653211 11123556789999999999999999999999999999997765
Q ss_pred hcccCCCCCcEEEEEccCccccccch--hcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhc---CCCeEEEEEc
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKES---GDQIAGFLFE 231 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~e 231 (470)
|++ .||+...+ |-.+... ....+.. .. .+..+ ....+ ++++++..+... ...+..++.+
T Consensus 73 ------~~~-~vi~~~~a-Hi~~~E~Ga~~~~~~~-~~---~~~~~g~~Gkl---t~e~v~~~i~~~d~~~~~~~~~~~e 137 (342)
T COG2008 73 ------PGE-SVICHETA-HIYTDECGAPEFFGGG-QK---LPIVPGADGKL---TPEDVEAAIRPDDIHHAPTPLAVLE 137 (342)
T ss_pred ------CCC-eEEEeccc-cceecccCcHHHHcCC-ce---eccCCCCCCCc---CHHHHHHhhcCCCcccCCCceEEEe
Confidence 455 55554433 5443321 1111100 00 01111 11222 799999988742 1244555544
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCCcceeeccccccCCCcceeEEE-ec
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL-AD 308 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~-~~ 308 (470)
..+++.|+++ |.++|++|.++|++||+.|+.|-+.-. ....| .+...+.--.|+++|+-+-++|. ++|+|+ ++
T Consensus 138 ~~~te~GtVy-~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~~tK~g~~-~~gAiv~gn 213 (342)
T COG2008 138 NTATEGGTVY-PLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFCLTKGGGA-PVGAIVFGN 213 (342)
T ss_pred eccCCCceec-CHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEecccCCcc-eeeeEEEcC
Confidence 4477999999 999999999999999999999976531 11112 11122222348887766656666 777766 78
Q ss_pred HHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEE
Q 012138 309 KEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVE 385 (470)
Q Consensus 309 ~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~ 385 (470)
.++++.++.. ..+..+...-+..+....+|+..--.....|...++.+|.+.+++. | .+... +.+..++.+.
T Consensus 214 ~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~----~-G~~~~~~~~tN~vf~~ 288 (342)
T COG2008 214 RDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAK----P-GVKLAFPVETNMVFVR 288 (342)
T ss_pred HHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc----C-CceeccCCcccEEEEE
Confidence 8888776432 3455555555555555555542111122334444566677766642 1 23322 3567777776
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
++... .........+...|+++.+.+ ..+||..++.+|+++|++++..+++++
T Consensus 289 l~~~~--i~~l~~~~~~~~~~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 289 LPESA--IEALRLAGALFYRGVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred CChHH--HHHHHhhchhheeeeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 65432 234444556666677776554 689999999999999999999998765
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-20 Score=183.70 Aligned_cols=328 Identities=17% Similarity=0.177 Sum_probs=195.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHH-HHccccC---CCC-CCCcHHH----HHHHHhhhhCCCeE-EecCChhHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQA-EKLTLSS---RAF-YNDKFPV----FAERLTSMFGYDMV-LPMNTGAEG 144 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-~~~~~~~---~~~-~~~~~~~----l~~~l~~~~~~~~v-~~~~sGteA 144 (470)
+++|++..+-.. .+|++++++.+.+ ..+..+. ..+ ..+...+ .+++++++++.+.. ++++||++|
T Consensus 19 ~~~~~~~~~~~~-----~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a 93 (402)
T cd00378 19 RETLELIASENF-----TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQA 93 (402)
T ss_pred HhCeeeeccCCc-----CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHH
Confidence 456666655322 4799999998765 3332211 111 1122222 33456677876543 444578999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch----hcccCCcccccCCCCCCCC--eeeecCCCHHHHHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA----ISMSCDNEAIRGFGPLLPG--HLKVDFGDITALEKIF 218 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~Le~~l 218 (470)
+..++..+.. +|+ .|++..++|.+..... ....+. +....++..+ ...+ |++++++++
T Consensus 94 ~~~~l~~l~~---------~Gd-~Vl~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~i---d~~~l~~~i 157 (402)
T cd00378 94 NLAVYFALLE---------PGD-TIMGLDLSHGGHLTHGSFTKVSASGK---LFESVPYGVDPETGLI---DYDALEKMA 157 (402)
T ss_pred HHHHHHHhcC---------CCC-EEEEecCccCccccccccccccccce---eEEEecCCcCcccCCc---CHHHHHHHH
Confidence 9999987754 566 7888888875432221 111111 0000111111 1222 899999998
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCcc-ccccCCCCccee--ecccc
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML-ASDWEEVRPDMV--ILGKA 294 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~-~~~~~~~~pdi~--s~sK~ 294 (470)
.+. ++++|++.+.++ |...+ +++|.++|++||+++|+||+|. |+...|... ... ..|++ +++|+
T Consensus 158 ~~~--~~~~v~~~~~~~--~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~----~~dv~~~s~sK~ 225 (402)
T cd00378 158 LEF--KPKLIVAGASAY--PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP----GADVVTTTTHKT 225 (402)
T ss_pred HhC--CCCEEEecCccc--CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc----CCcEEEeccccC
Confidence 653 567777544344 45555 9999999999999999999974 543333211 111 23554 78899
Q ss_pred ccCCCcceeEEEecH-HHHhhcCcCCccCCCCC-CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 295 LGGGVIPVSAVLADK-EVMLCIQPGEHGSTFGG-NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 295 l~gG~~~ig~v~~~~-~~~~~~~~~~~~~t~~~-~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
+ +|. +.|++++++ ++++.+........++. .....+++..++..+.. ++++++++++.+++.+.|.+++
T Consensus 226 l-~G~-~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---- 299 (402)
T cd00378 226 L-RGP-RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERG---- 299 (402)
T ss_pred C-CCC-CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 9 566 889999876 88877754322222332 22333333334443322 4566777888888888887642
Q ss_pred CceEEE-e-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCCC----CCHHHHHHH
Q 012138 370 NYVKEV-R-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPLS----ISSNELQEG 433 (470)
Q Consensus 370 ~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~~----~t~e~i~~~ 433 (470)
+... . ..+.++++.+.... .+...+.+.|.++||.+.+. ..+.+|+++... +++++++++
T Consensus 300 --~~~~~~~~~~~~v~v~~~~~~--~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~ 375 (402)
T cd00378 300 --FKVVSGGTDNHLVLVDLRPKG--ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI 375 (402)
T ss_pred --CeEeecCCCCeEEEEeCCccC--CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence 2221 2 23555555554221 24567778888889998631 346899987653 479999999
Q ss_pred HHHHHHHHhcccC
Q 012138 434 SKALHDVLELDLP 446 (470)
Q Consensus 434 ~~~l~~~l~~~~~ 446 (470)
++.|.++++ +-+
T Consensus 376 ~~~l~~~~~-~~~ 387 (402)
T cd00378 376 ADFIARALK-DAE 387 (402)
T ss_pred HHHHHHHHh-ccc
Confidence 999999998 654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=180.03 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEE
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSC 172 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~ 172 (470)
++..+++.+.+.....+. ..+...+++++++++++.+++++++||++|+..+++++ .. +|+ .||+.
T Consensus 11 ~~e~~a~~~~~~~~~~~~---~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~---------pGd-~Viv~ 77 (376)
T TIGR02379 11 GQELEYIAEAISEGKLSG---DGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQ---------PGD-EVIMP 77 (376)
T ss_pred HHHHHHHHHHHHcCCccC---CcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEEC
Confidence 556778888776644321 24567899999999999999999999999999888765 22 555 78888
Q ss_pred ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 173 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
.++|.+........+..+. +.+..++...+ |++++++++++ ++++|+ | .+++|...+ +++|.+
T Consensus 78 ~~t~~~~~~~~~~~G~~~v----~vd~d~~~~~~---d~~~le~~i~~---~tk~Ii--p-~~~~G~~~d----~~~I~~ 140 (376)
T TIGR02379 78 SYTFVSTANAFVLRGAKIV----FVDIRPDTMNI---DETLIESAITH---RTKAIV--P-VHYAGVACD----MDTIMA 140 (376)
T ss_pred CCCcHHHHHHHHHcCCEEE----EEecCCCcCCC---CHHHHHHhcCc---CceEEE--E-eCCCCCccC----HHHHHH
Confidence 8887654333332222111 12221222222 78999998875 788886 3 567899987 999999
Q ss_pred HHHhcCcEEEEeccccCCc-ccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcCC-------
Q 012138 253 LCSKYNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPGE------- 319 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g-~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~~------- 319 (470)
+|++||++||+|++|+-.. ..|+. .+..-|+.+|| |.++.|. +.|+++.+ +++.+.++...
T Consensus 141 la~~~~i~vIeDaa~~~g~~~~~~~-----~g~~~~~~~fSf~~~K~l~~g~-~gG~v~~~~~~~~~~~~~~~~~g~~~~ 214 (376)
T TIGR02379 141 LANKHQLFVIEDAAQGVMSTYKGRA-----LGSIGHLGTFSFHETKNYTSGG-EGGALLINDQAFIERAEIIREKGTNRS 214 (376)
T ss_pred HHHHCCCEEEEECccccCCccCCcc-----cCCCCCEEEEeCCCCCcCcccC-CceEEEECCHHHHHHHHHHHHhCCCCc
Confidence 9999999999999998221 22321 22233777888 8888776 78887764 77777664321
Q ss_pred --------------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceEEEecccee
Q 012138 320 --------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKEVRGRGLF 381 (470)
Q Consensus 320 --------------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~~~~~~g~~ 381 (470)
.+..+-.+.+.++.+.+.|+.+.+ +.++.++..+++.+.|..+.. ..|.........-.+
T Consensus 215 ~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 292 (376)
T TIGR02379 215 QFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHM 292 (376)
T ss_pred cccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEE
Confidence 133344667787777777776644 556666677777777765421 111111011111123
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccC----C----------------------CCEEEEecCCCCCHHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPT----H----------------------DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~----------------------~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
+.+.++.. .+..++.+.|.++||.+... + .+.+.+-.....|++|+++.++
T Consensus 293 ~~i~~~~~---~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~ 369 (376)
T TIGR02379 293 FYIKLKDE---DDRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQ 369 (376)
T ss_pred EEEEECCc---CCHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHH
Confidence 34444332 25789999999999986521 1 2234444445689999999999
Q ss_pred HHHHHH
Q 012138 436 ALHDVL 441 (470)
Q Consensus 436 ~l~~~l 441 (470)
.|++++
T Consensus 370 ~i~~~~ 375 (376)
T TIGR02379 370 TICDYL 375 (376)
T ss_pred HHHHHh
Confidence 998875
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=184.40 Aligned_cols=284 Identities=17% Similarity=0.160 Sum_probs=186.7
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+|++.++++.|.+..++++||+.|+..++..+.. +|+ .|++..+.| +.+.......... +
T Consensus 57 r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~---------~Gd-~Vv~~~~~y-~~~~~~~~~~~~~-~ 124 (386)
T PRK06767 57 RLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFLK---------AGD-HIICSNGLY-GCTYGFLEVLEEK-F 124 (386)
T ss_pred CCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCcH-HHHHHHHHHHHhh-c
Confidence 345677899999999999988899999999999888876654 465 677766664 4433322211100 0
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
+ ..+..++..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+|++|+.. .
T Consensus 125 ----g---i~~~~~~~~d~~~l~~~i~~---~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a~~-~ 189 (386)
T PRK06767 125 ----M---ITHSFCDMETEADIENKIRP---NTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFCSP-Y 189 (386)
T ss_pred ----C---eEEEEeCCCCHHHHHHhhCc---CceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence 0 01223333478999988875 7899998888999999998 999999999999999999999621 1
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcce-eEEEecHHHHhhcCcC-CccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPG-EHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
.+... ..+. |++ +++|.++| |. ++ |+++++++.++.+... .....-..+++.++++...|+.+. ...
T Consensus 190 ~~~pl---~~g~--Div~~S~sK~l~g~g~-~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl~--~r~ 261 (386)
T PRK06767 190 LQRPL---ELGC--DAVVHSATKYIGGHGD-VVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLA--VRM 261 (386)
T ss_pred cCCch---hcCC--cEEEecCcceecCCCC-ceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHH--HHH
Confidence 12111 1233 554 77799985 55 64 7888888877654321 111111246666666655554332 345
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEE------------EeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKE------------VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--- 412 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--- 412 (470)
++.++++.++.+.|++.. .+.. .++.|.++.++++... ....+|.+.|+..++.++-|
T Consensus 262 ~~~~~~a~~la~~L~~~p-----~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~--~~~~~f~~~l~~~~~~~s~G~~~ 334 (386)
T PRK06767 262 DRHCDNAEKIVSFLKNHD-----AVEGVWYPEGELASRQMKRGGGVISFSIKGGK--EETQAFINDLHFITIAVSLGDTE 334 (386)
T ss_pred HHHHHHHHHHHHHHHcCC-----CccEEECCCcHHHHHhCCCCCceEEEEEcCCH--HHHHHHHHhCCccEEecCCCCcC
Confidence 666777777777776642 2222 2356788888886321 35778888887666554322
Q ss_pred ------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 413 ------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 413 ------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++.+||++.+ |+.+.+++-|.++|.
T Consensus 335 sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~ 384 (386)
T PRK06767 335 TLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALK 384 (386)
T ss_pred ccccCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 14689999554 567777777777775
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=167.59 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=183.3
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCC
Q 012138 131 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 210 (470)
Q Consensus 131 ~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 210 (470)
..+++++++++|.|+++.+-.+.. ||+ ..++..|-|.|......-.++....-. .-...+...+ +
T Consensus 145 dP~~~Vv~~G~T~ane~l~fcLad---------pgd-afLvPtPyY~gfdrdl~~rTgveivpv--~c~Ss~~f~i---t 209 (471)
T KOG0256|consen 145 DPERVVVTNGATSANETLMFCLAD---------PGD-AFLVPTPYYPGFDRDLRWRTGVEIVPV--HCSSSNGFQI---T 209 (471)
T ss_pred CccceEEecccchhhHHHHHHhcC---------CCc-eeeecCCCCCcccccceeccCceEEEE--EeecCCCccc---c
Confidence 457899999999999998877665 566 777888888776443332222110000 0000011122 5
Q ss_pred HHHHHHHHHhc---CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc-cc---
Q 012138 211 ITALEKIFKES---GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS-DW--- 281 (470)
Q Consensus 211 ~~~Le~~l~~~---~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~-~~--- 281 (470)
.++||+++.+. +.+++.++ ++| +||-|+++ +++.+..+.++|.++++.+|+||+|+|-.+....| .+ +.
T Consensus 210 v~alE~A~~~A~~~~~kVkGvlitNP-sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~ 287 (471)
T KOG0256|consen 210 VEALEAALNQARKLGLKVKGVLITNP-SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKD 287 (471)
T ss_pred HHHHHHHHHHHHHhCCceeEEEEeCC-CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhc
Confidence 88898888653 45788777 566 99999999 99999999999999999999999999722222222 11 11
Q ss_pred CCCCcce----eecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCC-CCHHHHHHHHHHHHH--Hhh---hhHHHH
Q 012138 282 EEVRPDM----VILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFG-GNPLASAVAIASLDV--IRD---EKLAER 349 (470)
Q Consensus 282 ~~~~pdi----~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~--~~~---~~~~~~ 349 (470)
....+|. .++||-+| +|+ |+|+|.. ++++....+.. +.|+ .++..+..+..-|.. +.+ .+..++
T Consensus 288 ~~~~~~rvHivyslSKD~GlpGf-RvGviYS~ne~VvsaA~km---ssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~R 363 (471)
T KOG0256|consen 288 PHLDPDRVHIVYSLSKDFGLPGF-RVGVIYSNNEDVVSAATKM---SSFGLVSSQTQYLLASLLSDEEFTREYLRENNKR 363 (471)
T ss_pred cccCCCcEEEEEEeccccCCCce-EEEEEEecChHHHHHHHHH---hhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 1124453 39999999 998 9999994 66666655432 2222 455555544443432 222 223445
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEecc---CCCchhHHHHHHHHHHc-CceeccCC------CCEEE
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDK---TALPVSAYDICLKMKER-GILAKPTH------DTIVR 418 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~---~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR 418 (470)
++....++.++|++++ +... .+.|+|+++.+.. ..+...-.++.+++.++ ++.++||. ++++|
T Consensus 364 l~~rh~~~~~gLk~lg------I~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFR 437 (471)
T KOG0256|consen 364 LRIRHRYIVEGLKALG------IPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFR 437 (471)
T ss_pred HHHHHHHHHhhHHhcC------CceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEE
Confidence 5566667777777752 4343 5567777766532 11123345677888888 99999984 89999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q 012138 419 LTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+++. .+.++.++-++++|+.++.
T Consensus 438 vcFA-n~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 438 VCFA-NMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred EEec-cCCHHHHHHHHHHHHHHHH
Confidence 9953 4555555659999999987
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=166.16 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=195.0
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---- 209 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 209 (470)
.+++|+|.+.+++.+++++.. .|+ .|++...+|.+.......++ ..++.++.+
T Consensus 126 diiit~G~t~~l~~~l~~~~N---------~gd-~vlie~~ty~~AL~s~~a~g-------------v~~ipv~md~~Gi 182 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLIN---------RGD-HVLIEEYTYPSALQSMEALG-------------VKIIPVKMDQDGI 182 (472)
T ss_pred eEEEecCCchHHHHHHHHhhc---------CCC-ceEEecccchHHHHhccccC-------------ceEEeccccCCCC
Confidence 589999999999999999987 355 78888888854433222211 112233332
Q ss_pred CHHHHHHHHHhcC------CCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc---CCc---
Q 012138 210 DITALEKIFKESG------DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS---GRM--- 276 (470)
Q Consensus 210 d~~~Le~~l~~~~------~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~---G~~--- 276 (470)
++|.|++.+..+. .+....++-| .|||||..+ +.+..++|.+||||||+++|.||+|.=+-+. +..
T Consensus 183 ~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~ 261 (472)
T KOG0634|consen 183 DPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELE 261 (472)
T ss_pred CHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCcccc
Confidence 7999999998763 2366777666 899999999 9999999999999999999999999732222 110
Q ss_pred ---c--------------ccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH
Q 012138 277 ---L--------------ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339 (470)
Q Consensus 277 ---~--------------~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 339 (470)
+ ..+..|....+-||||-+++|+ |+||+.+++.+++++.......|-+++.+.+....+.|+
T Consensus 262 ~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGl-RlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~ 340 (472)
T KOG0634|consen 262 SPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGL-RLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLK 340 (472)
T ss_pred CccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcc-eeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHH
Confidence 1 1111121222339999999999 999999999888877655555666688888888888888
Q ss_pred HHhhhhHHHHHHHHHHHHHHH----HHHHHhhCCCc-eEEE-eccceeEEEEeccCCC----chh-H-HHHHHHHHHcCc
Q 012138 340 VIRDEKLAERSAHLGEELRQH----LFKIQQQFPNY-VKEV-RGRGLFNAVEFDKTAL----PVS-A-YDICLKMKERGI 407 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~----L~~l~~~~p~~-~~~~-~~~g~~~~~~~~~~~~----~~~-~-~~~~~~l~~~Gv 407 (470)
.+.++++.+.+.+++.....+ |.++...+|.. .... +..|.|++++++.... ..+ . +.+...+.++||
T Consensus 341 ~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV 420 (472)
T KOG0634|consen 341 RWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGV 420 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCe
Confidence 877766666665555444333 23333445533 3333 4457777777752111 111 2 334456677899
Q ss_pred eeccCC----------CC-EEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 408 LAKPTH----------DT-IVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 408 ~~~~~~----------~~-~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+|. .. ++|++.++ .+.|++++++++|..+++ +.
T Consensus 421 ~~v~G~~F~v~p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~~ik-e~ 467 (472)
T KOG0634|consen 421 KLVCGSWFMVDPESSWSKIFFRLSIAF-AEPEKLDEGIERFGSVIK-EH 467 (472)
T ss_pred EEecCceeEEcCccCCCcceEEEEeec-CCHHHHHHHHHHHHHHHH-HH
Confidence 987652 23 89999875 567799999999999998 64
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-19 Score=177.41 Aligned_cols=331 Identities=14% Similarity=0.185 Sum_probs=197.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHH--HccccCCC-C------CCCcHHHHHHHHhhhhCC--CeEEecCChhH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAE--KLTLSSRA-F------YNDKFPVFAERLTSMFGY--DMVLPMNTGAE 143 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~-~------~~~~~~~l~~~l~~~~~~--~~v~~~~sGte 143 (470)
+.|+|..+. +..++.+.+++.+.+. ........ . ..+..+++++.++++++. +.+++++||++
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~ 77 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE 77 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence 357776544 2367899999988775 21111110 0 013356778889998875 45999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
|++.+++.+... +. ++|+ .|++....|+........+. .......+.+..++ ..+ |+++|++++++
T Consensus 78 al~~~l~~l~~~-~~----~~gd-~Vi~~~~~~~s~~~~~~~~~-~~g~~~~~v~~~~~-g~~---d~~~l~~~i~~--- 143 (404)
T PRK14012 78 SDNLAIKGAAHF-YQ----KKGK-HIITSKTEHKAVLDTCRQLE-REGFEVTYLDPQSN-GII---DLEKLEAAMRD--- 143 (404)
T ss_pred HHHHHHHHHHHh-hc----CCCC-EEEEecCccHHHHHHHHHHH-hCCCEEEEEccCCC-CcC---CHHHHHHhcCC---
Confidence 999998866431 00 1355 67776666533222111110 00111111111111 112 89999999976
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIP 301 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ 301 (470)
++++|++..++|++|.+.| +++|.++|++||+++|+|++|+ +|.. .+... ...+|++++| |.++++ +
T Consensus 144 ~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~--~~~~~--~~~~D~~~~s~~K~~gp~--g 212 (404)
T PRK14012 144 DTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKV--PIDLS--KLKVDLMSFSAHKIYGPK--G 212 (404)
T ss_pred CCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCc--ccCcc--cCCCCEEEEehhhccCCC--c
Confidence 7888888888999999998 9999999999999999999997 2211 11122 2346887666 966543 6
Q ss_pred eeEEEecHHHHhhcCcCCccC-------CCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 302 VSAVLADKEVMLCIQPGEHGS-------TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~-------t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
+|+++.+++....+.+...+. ..+.+.....+..++++.++. +...++.+.+.+++.+.|+++ | .+
T Consensus 213 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~----~-~i 287 (404)
T PRK14012 213 IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI----E-EV 287 (404)
T ss_pred eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----C-CE
Confidence 788887766443343321111 112344444455466665433 345666777777777777653 2 22
Q ss_pred EEE-----eccceeEEEEeccCCCchhHHHHHHHHHHcCcee----ccC-----------------CCCEEEEecCCCCC
Q 012138 373 KEV-----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILA----KPT-----------------HDTIVRLTPPLSIS 426 (470)
Q Consensus 373 ~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~----~~~-----------------~~~~iR~~~~~~~t 426 (470)
... +..+.+. +.+... +..++...|.+.+|.. .+. ..+.+|++++..+|
T Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t 362 (404)
T PRK14012 288 YLNGDLEQRVPGNLN-VSFNYV----EGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 362 (404)
T ss_pred EEeCCccccCCCEEE-EEEeCc----CHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCC
Confidence 211 1111211 212211 2345666664323221 111 14789999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 012138 427 SNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++|++++++.|+++++ +++.
T Consensus 363 ~~dvd~~~~~l~~~~~-~~~~ 382 (404)
T PRK14012 363 EEEIDYAIELVRKSIG-KLRE 382 (404)
T ss_pred HHHHHHHHHHHHHHHH-HHHh
Confidence 9999999999999998 7754
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=175.82 Aligned_cols=331 Identities=15% Similarity=0.161 Sum_probs=196.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHH-HccccCC--CC--CCCcHHHHHH----HHhhhhCCCeE-EecCChhHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAE-KLTLSSR--AF--YNDKFPVFAE----RLTSMFGYDMV-LPMNTGAEG 144 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~--~~--~~~~~~~l~~----~l~~~~~~~~v-~~~~sGteA 144 (470)
+.+|++.++-.. .+|+|.+++.+.+. .+...+. .+ ..+....+++ ++++++|.+.. ++++||++|
T Consensus 25 ~~~~~l~~~~n~-----~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~a 99 (416)
T PRK00011 25 EEHIELIASENF-----VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQA 99 (416)
T ss_pred hcCeeeecccCc-----CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHH
Confidence 345666665322 47999999877653 2221111 11 1122344444 77888886643 444678999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc--hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+..++..+.. +|+ .|++..++|.+.... ...... ......+.+..++...+ |++++++++++.
T Consensus 100 l~~~l~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~---d~~~l~~~i~~~- 164 (416)
T PRK00011 100 NAAVYFALLK---------PGD-TILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEETGLI---DYDEVEKLALEH- 164 (416)
T ss_pred HHHHHHHhcC---------CCC-EEEEeccccCCcccccccccccc-ceeeEeecCcCcccCCc---CHHHHHHHHHhc-
Confidence 9998887643 465 777877776433211 111111 01111111111111122 899999999753
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCC
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGV 299 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~ 299 (470)
++++|++.. +..|...| +++|.++|++||+++|+|++|. |+...|... . ..+ ..|++ +++|+++ |.
T Consensus 165 -~~k~v~~~~--~~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~~-~-~~~-~~di~~~S~~K~l~-g~ 233 (416)
T PRK00011 165 -KPKLIIAGA--SAYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVHP-S-PVP-HADVVTTTTHKTLR-GP 233 (416)
T ss_pred -CCCEEEECC--CcCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCccC-C-CCC-CCcEEEecCCcCCC-CC
Confidence 577777643 23455666 9999999999999999999986 432222111 0 111 23554 7889884 45
Q ss_pred cceeEEEec-HHHHhhcCcCCccCCCC-CCHHHHHHHHHHH-HHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 300 IPVSAVLAD-KEVMLCIQPGEHGSTFG-GNPLASAVAIASL-DVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 300 ~~ig~v~~~-~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l-~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+.|+++++ +++.+.++.......++ .....++++..++ +.+++ +++.++.+++++++++.|++++ +..
T Consensus 234 -~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~ 306 (416)
T PRK00011 234 -RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERG------FRV 306 (416)
T ss_pred -CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC------Cee
Confidence 88899985 68887775433222232 2233333333333 33322 4577888888899999888752 221
Q ss_pred Ee--ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecC----CCCCHHHHHHHHHHHH
Q 012138 375 VR--GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPP----LSISSNELQEGSKALH 438 (470)
Q Consensus 375 ~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~----~~~t~e~i~~~~~~l~ 438 (470)
.. ..+.++++.+.... .+..++.+.|.++||.+... .+..+|++.. ..+|++|++++++.|+
T Consensus 307 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~ 384 (416)
T PRK00011 307 VSGGTDNHLVLVDLRSKG--LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIA 384 (416)
T ss_pred eecCCCCeEEEEeCcccC--CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHH
Confidence 11 23455566554221 24677889999999998631 1456898542 2568999999999999
Q ss_pred HHHhcccC
Q 012138 439 DVLELDLP 446 (470)
Q Consensus 439 ~~l~~~~~ 446 (470)
+++. ..+
T Consensus 385 ~~~~-~~~ 391 (416)
T PRK00011 385 DVLD-NPD 391 (416)
T ss_pred HHHh-ccC
Confidence 9988 533
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=178.38 Aligned_cols=305 Identities=15% Similarity=0.134 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHHHHHccccCCC--C-----CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRA--F-----YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKF 162 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~ 162 (470)
.++++.+++.+.+......+.. . ..+..+++.+.++++++. +.++|++|++++++.++..+..+. ..
T Consensus 11 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~-~~--- 86 (364)
T PLN02651 11 IDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFY-KD--- 86 (364)
T ss_pred CCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc-cC---
Confidence 6789999998887543221111 0 123356777888888874 479999999999999988765421 11
Q ss_pred CCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 163 SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 163 ~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
+|+ .|++....|+. .......-........+.+...+ ..+ |++++++++++ +++++++..++|++|.+.|
T Consensus 87 -~g~-~vl~~~~~h~s-~~~~~~~~~~~g~~v~~v~~~~~-~~~---d~~~l~~~i~~---~t~lv~v~~~~n~tG~~~~ 156 (364)
T PLN02651 87 -KKK-HVITTQTEHKC-VLDSCRHLQQEGFEVTYLPVKSD-GLV---DLDELAAAIRP---DTALVSVMAVNNEIGVIQP 156 (364)
T ss_pred -CCC-EEEEcccccHH-HHHHHHHHHhcCCEEEEEccCCC-CcC---CHHHHHHhcCC---CcEEEEEECCCCCceeccc
Confidence 344 66665555332 21111100000111001111110 111 78999999976 7888888888999999998
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH 320 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~ 320 (470)
+++|.++|++||+++++|.+|+ +|. ..+..+.++ +|++++| | +.|+. .+|+++.+++....+.+...
T Consensus 157 ----l~~I~~~~~~~g~~~~vD~a~~-~g~--~~~~~~~~~--~D~~~~s~hK-~~gp~-G~g~l~v~~~~~~~l~p~~~ 225 (364)
T PLN02651 157 ----VEEIGELCREKKVLFHTDAAQA-VGK--IPVDVDDLG--VDLMSISGHK-IYGPK-GVGALYVRRRPRVRLEPLMS 225 (364)
T ss_pred ----HHHHHHHHHHcCCEEEEEcchh-hCC--cccCcccCC--CCEEEechhh-hCCCC-ceEEEEEcCCCCCCCCcccc
Confidence 9999999999999999999998 211 112233344 5877665 8 44444 78999998877766654322
Q ss_pred c-------CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe------ccceeEEEE
Q 012138 321 G-------STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR------GRGLFNAVE 385 (470)
Q Consensus 321 ~-------~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~------~~g~~~~~~ 385 (470)
+ ...+.|..++.++.++|+.+.+ +.+.++.+++.+++.+.|.+. .| .+.... ....++.+.
T Consensus 226 g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~---~~-~~~i~~~~~~~~~~~~i~~~~ 301 (364)
T PLN02651 226 GGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAK---LG-GVRVNGPRDPEKRYPGTLNLS 301 (364)
T ss_pred CCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh---CC-CEEEECCCCcccCcCCEEEEE
Confidence 1 1224677788888888888764 446667777777777777542 11 122211 123456665
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHHH
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i~ 431 (470)
+.. .++.++.+.|.+ |.+..+. .+.+|++++..+|++|||
T Consensus 302 ~~~----~~~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 302 FAY----VEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred eCC----CCHHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 542 367788888865 6654321 368999999999999985
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=180.11 Aligned_cols=287 Identities=16% Similarity=0.174 Sum_probs=188.5
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh----ccc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI----SMS 187 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~----~~~ 187 (470)
..+.++...+|++.++++.+.+.+++++||++|+..++..+.. +|+ .|++..+.|. .+.... ...
T Consensus 59 ~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~---------~Gd-~Vl~~~~~y~-~~~~~~~~~~~~~ 127 (400)
T PRK06234 59 SRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALK---------AGD-HVVASDTLYG-CTFALLNHGLTRY 127 (400)
T ss_pred cCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC---------CCC-EEEEecCccc-hHHHHHHHHHhhC
Confidence 3345677899999999999988999999999999988876654 566 6777777653 333221 111
Q ss_pred CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc--CcEEEEec
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADE 265 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~De 265 (470)
+ ..+..++..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|++| |+++|+||
T Consensus 128 G------------~~v~~vd~~d~e~l~~~i~~---~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDe 188 (400)
T PRK06234 128 G------------VEVTFVDTSNLEEVRNALKA---NTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDN 188 (400)
T ss_pred C------------eEEEEECCCCHHHHHHHhcc---CCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEEC
Confidence 1 11345556689999999976 7899998888999999998 99999999997 99999999
Q ss_pred cccCCcccCCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcCC-c-cCCCCCCHHHHHHHHHHHHH
Q 012138 266 IQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGE-H-GSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 266 v~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~-~-~~t~~~~~~~~aaa~a~l~~ 340 (470)
+|+... .+... +...|++ +++|.++| |....|++++++++++.++... . ..+...+|..++.+...|+.
T Consensus 189 a~~~~~-~~~~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t 262 (400)
T PRK06234 189 TFCTPY-IQRPL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT 262 (400)
T ss_pred CCCchh-cCCch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc
Confidence 997321 12111 1123554 78899985 6513488999998888775321 1 12345778888777766654
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCc
Q 012138 341 IRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI 407 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 407 (470)
+. ...++..++..++.+.|++... .||... ....+.|.++.+++.... ....+|.+.|.--++
T Consensus 263 l~--~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~--~~~~~f~~~l~~~~~ 338 (400)
T PRK06234 263 LQ--IRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGV--EEGKVVMNNVKLATL 338 (400)
T ss_pred HH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcH--HHHHHHHHhCCcceE
Confidence 43 3445555666666666654221 122110 011356888888886321 245677777754443
Q ss_pred eec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 408 LAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 408 ~~~----------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
..+ |. .++.+||++.+ |+.+++++-|.++|+
T Consensus 339 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~ 396 (400)
T PRK06234 339 AVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL----EDVDDIIADLKQALD 396 (400)
T ss_pred eccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH
Confidence 322 11 14789999655 556667777776665
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=180.71 Aligned_cols=293 Identities=13% Similarity=0.149 Sum_probs=188.4
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccC
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSC 188 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~ 188 (470)
..+.++....|++.|+++.+.+.+++++||++|+..++..+.. +|+ .|++..+.|.+...... ...+
T Consensus 78 ~R~~~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~~---------~Gd-~Vv~~~p~Y~~~~~~~~~~l~~~G 147 (427)
T PRK07049 78 SRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVR---------PGD-VILHSQPLYGGTETLLAKTFRNFG 147 (427)
T ss_pred cCCCCcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhC---------CCC-EEEEcCCCcccHHHHHHHHHHhcC
Confidence 3456777899999999999999999999999999999887765 566 77888889876533211 1111
Q ss_pred CcccccCCCCCCCCeeeec-CCCHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChhhHHHHHHHHHh---cCcEEE
Q 012138 189 DNEAIRGFGPLLPGHLKVD-FGDITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK---YNILMI 262 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-~~d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~---~gillI 262 (470)
.. .+.++ ..|++++++.+.+. ..++++|+++.++||+|.+++ .+.+.+|.+.|++ +++++|
T Consensus 148 i~------------~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d-~~~l~~la~~~~~~~~~~~~vv 214 (427)
T PRK07049 148 VG------------AVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD-VAAVRRVADAIEARQGHRPIIA 214 (427)
T ss_pred cE------------EEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccC-HHHHHHHHHHhhhcccCCCEEE
Confidence 11 11222 23788888877532 136889998888999999995 4444444444322 799999
Q ss_pred EeccccCCcccCCccccccCCCCccee--ecccccc--CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHH
Q 012138 263 ADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALG--GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 338 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~--gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l 338 (470)
+||++.++..... .+ ++ .|++ |+||.++ +|+ ++|++++++++++.+.........+.++..+.++...|
T Consensus 215 vDety~~~~~~~p---l~-~g--~divv~S~SK~~gG~~gl-r~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L 287 (427)
T PRK07049 215 CDNTLLGPVFQKP---LE-HG--ADLSVYSLTKYVGGHSDL-VAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSL 287 (427)
T ss_pred EECCccccccCCc---cc-cC--CCEEEEcCceeecCCCCc-EEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC
Confidence 9999864321111 11 22 3544 9999999 588 99999999998887765433334457888888877777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCce-----------EEEeccceeEEEEeccCCCchhHHHHHHHHH
Q 012138 339 DVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYV-----------KEVRGRGLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
+.+.. ..++..+++..+.+.|++... .||+.. ....+.|.++.+++..+. ..+.+|++.|.
T Consensus 288 ~tl~~--R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~ 363 (427)
T PRK07049 288 ETLVL--RMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQ--AAAFRFLNALQ 363 (427)
T ss_pred ChHHH--HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCH--HHHHHHHHcCc
Confidence 65432 344456666677777765421 223111 112356889999886421 24556666554
Q ss_pred Hc--Cceec--------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 404 ER--GILAK--------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 404 ~~--Gv~~~--------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
-- ++... |. .++.|||++.+ |+.+++++-|.++|+
T Consensus 364 l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 425 (427)
T PRK07049 364 IFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI----EHPDDLIADLAQALD 425 (427)
T ss_pred ccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 21 21111 11 14689999554 677888888888776
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=176.05 Aligned_cols=299 Identities=17% Similarity=0.225 Sum_probs=190.2
Q ss_pred HHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcc
Q 012138 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 177 (470)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yh 177 (470)
+++.+.++...+ ...+...++++.++++++.+++++++||++|++.+++.+.. .+|+ .|++..++|+
T Consensus 3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~--------~~gd-~vl~~~~~~~ 69 (352)
T cd00616 3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGI--------GPGD-EVIVPSFTFV 69 (352)
T ss_pred HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCC--------CCCC-EEEeCCcchH
Confidence 445555554333 23456789999999999988999999999999999987631 0454 7888888877
Q ss_pred ccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc
Q 012138 178 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 257 (470)
Q Consensus 178 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~ 257 (470)
+........+.... +.+..++...+ |++++++++++ ++++|++. +++|.+.| +++|.++|++|
T Consensus 70 ~~~~~~~~~g~~~~----~~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~---~~~G~~~~----~~~i~~l~~~~ 132 (352)
T cd00616 70 ATANAILLLGATPV----FVDIDPDTYNI---DPELIEAAITP---RTKAIIPV---HLYGNPAD----MDAIMAIAKRH 132 (352)
T ss_pred HHHHHHHHcCCeEE----EEecCCCcCCc---CHHHHHHhcCc---CCeEEEEE---CCCCCcCC----HHHHHHHHHHc
Confidence 55433322221111 11111111112 78999988864 78888864 36888887 99999999999
Q ss_pred CcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcCC------------
Q 012138 258 NILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPGE------------ 319 (470)
Q Consensus 258 gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~~------------ 319 (470)
|+++|+|++|+ |....+. ..+...|+.++| |.+++| ..|+++.+ +++.+.++...
T Consensus 133 ~i~li~D~a~~~g~~~~~~-----~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (352)
T cd00616 133 GLPVIEDAAQALGATYKGR-----KVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKYE 205 (352)
T ss_pred CCeEEEECCCCCCCeECCE-----EcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCccc
Confidence 99999999998 3211221 112223555444 988654 55667664 56665543210
Q ss_pred ---ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE---eccceeEEEEeccCCCch
Q 012138 320 ---HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDKTALPV 393 (470)
Q Consensus 320 ---~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~---~~~g~~~~~~~~~~~~~~ 393 (470)
.+.++..+++.++.+...++.+ +.+.++.+++.+++++.|.++..- ..+... .....++.+.+... .+.
T Consensus 206 ~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (352)
T cd00616 206 HEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLPGI--RLPDVPPGVKHSYHLYVIRLDPE-AGE 280 (352)
T ss_pred cceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCCCc--cCCCCCCCCceeeEEEEEEECCc-CCC
Confidence 1123346677777776665544 446677788888888888764210 011111 11234555545421 013
Q ss_pred hHHHHHHHHHHcCceec----cCC-----------------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 394 SAYDICLKMKERGILAK----PTH-----------------------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~----~~~-----------------------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+..++.+.|.++||.+. |.. .+.+|+++....|++||++++++|+
T Consensus 281 ~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 281 SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 68899999999999764 110 2689999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=177.20 Aligned_cols=284 Identities=14% Similarity=0.158 Sum_probs=185.0
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
..+.++...+|++.++++.|.+..++++||++|+..++. +.. +|+ .||+..+.|++...........
T Consensus 47 ~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~-ll~---------~Gd-~Vl~~~~~y~~t~~~~~~~~~~-- 113 (366)
T PRK08247 47 SRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMS-LFR---------SGD-ELIVSSDLYGGTYRLFEEHWKK-- 113 (366)
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHH-HhC---------CCC-EEEEecCCcCcHHHHHHHHhhc--
Confidence 345677889999999999998888999999999987764 332 455 7888888887642211110000
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~ 270 (470)
....+..++..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+||+|. ++
T Consensus 114 -------~G~~v~~vd~~d~~~l~~~i~~---~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 114 -------WNVRFVYVNTASLKAIEQAITP---NTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred -------cCceEEEECCCCHHHHHHhccc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcccc
Confidence 0012345555689999999876 7899998877999987776 9999999999999999999985 22
Q ss_pred cccCCccccccCCCCcceeeccccccC--CCcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALGG--GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~g--G~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
. .... + .+.+.-+.+++|.++| +. ..|+++++ +++.+.+.......+...+++.+..+...|+.+. ...
T Consensus 180 ~--~~p~--~-~g~di~i~S~sK~~~g~~d~-~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~ 251 (366)
T PRK08247 180 L--QRPL--E-EGADIVIHSATKYLGGHNDV-LAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRM 251 (366)
T ss_pred c--cCch--h-cCCcEEEeecceeccCCCce-eeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHH
Confidence 1 1111 1 2222233488999985 45 77888876 6777766543333344567777777766665443 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEE--EeccceeEEEEeccCCCchhHHHHHHHHH----------HcCceeccC---
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKE--VRGRGLFNAVEFDKTALPVSAYDICLKMK----------ERGILAKPT--- 412 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~l~----------~~Gv~~~~~--- 412 (470)
++.++++..+.+.|++. | .+.. .++.|.++.|+++.. ....+|.+.+. .+.+++.|+
T Consensus 252 ~~~~~~a~~l~~~L~~~----p-~v~~v~~P~~gg~~sf~~~~~---~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~ 323 (366)
T PRK08247 252 RQHEENAKAIAAFLNEQ----P-GVTDVLYPGRGGMLSFRLQDE---EWVNPFLKSLKLITFAESLGGVESFITYPATQT 323 (366)
T ss_pred HHHHHHHHHHHHHHHhC----C-CeeEEecCCcCcEEEEEECCH---HHHHHHHHcCCcceEccCCCCCceEEECCcccc
Confidence 45566777777776653 3 3332 344788999987531 12334444332 112333332
Q ss_pred --------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 413 --------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 413 --------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++.+||+..+ |+++++++-|.++|+
T Consensus 324 ~~~~~~~~r~~~gi~~~~~R~svGl----E~~~dl~~dl~~al~ 363 (366)
T PRK08247 324 HADIPEEIRIANGVCNRLLRFSVGI----ENVEDLIADLKQAFK 363 (366)
T ss_pred cccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 14689999544 667788888888776
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=178.28 Aligned_cols=286 Identities=14% Similarity=0.154 Sum_probs=189.6
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCC
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCD 189 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~ 189 (470)
.+.++...+++++++++.|.+.+++++||++|+..++..+.. +|+ .||+..++|++..... +...+
T Consensus 60 r~~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all~---------~GD-~Vi~~~~~y~~~~~~~~~~~~~~G- 128 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLK---------PGD-RVVSIKDTYGGTNKIFTEFLPRMG- 128 (398)
T ss_pred CCCChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---------CCC-EEEEcCCchHHHHHHHHHHHhhCC-
Confidence 355777899999999999999999999999999999886654 465 7888888876532111 11111
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..++..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++|+.
T Consensus 129 -----------i~v~~vd~~d~e~l~~~i~~---~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~ 190 (398)
T PRK08249 129 -----------VDVTLCETGDHEQIEAEIAK---GCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFAT 190 (398)
T ss_pred -----------eEEEEcCCCCHHHHHHhcCC---CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCc
Confidence 11233444589999999976 7899998888999999998 99999999999999999999983
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcce-eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~ 345 (470)
+. .... .....|++ +++|.++| |- ++ |++++++++++.++..........++..++.+...++.+..
T Consensus 191 ~~-~~~~-----l~~~~Divv~S~sK~l~g~~~-~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~~-- 261 (398)
T PRK08249 191 PI-NQNP-----LALGADLVIHSATKFLSGHAD-ALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLKL-- 261 (398)
T ss_pred cc-cCCc-----hhhCCCEEeccCceecCCCCC-ceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHHH--
Confidence 31 1111 11223544 78899985 43 44 66778888888776444434456788888888777776632
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCceec
Q 012138 346 LAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILAK 410 (470)
Q Consensus 346 ~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~~ 410 (470)
..++..+++..+.+.|++... .||... ....+.|.++.+++.... ....+|++.|.- .++...
T Consensus 262 R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~--~~~~~f~~~l~l~~~~~s~G 339 (398)
T PRK08249 262 RVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGM--DTVKRLLPKLRYAHRAANLG 339 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCH--HHHHHHHHhCCcceEccCCC
Confidence 445556666777777765321 223111 112356889999886321 235566665532 222111
Q ss_pred --------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 --------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 --------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.+||++.+ |+.+++++-|.++|+
T Consensus 340 ~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 392 (398)
T PRK08249 340 AVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI----EDTEDLIADLEQAFA 392 (398)
T ss_pred CCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 11 14789999554 566777777777766
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=175.10 Aligned_cols=285 Identities=17% Similarity=0.126 Sum_probs=174.3
Q ss_pred CCcHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchh---cccCCCCCcEEEEEccCccccccchhcccC
Q 012138 116 NDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~---~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
.++.+++++++++++|.+ .++||+||++|+..++++++..... ..+.+++++.+|+.....|.....+....+
T Consensus 37 ~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g 116 (345)
T cd06450 37 TEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLD 116 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHh
Confidence 345667777888887764 6999999999999999987642100 000112233344444444655433333222
Q ss_pred CcccccCCCCCCCCeeeecCCCHHHHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
.... +.+..++. .+ |+++|++++++ .+.++++|++...+|++|.+.| +++|.++|++||+++++|+
T Consensus 117 ~~~~---~v~~~~~~-~~---d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~ 185 (345)
T cd06450 117 VKVR---LVPVDEDG-RM---DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDA 185 (345)
T ss_pred cCeE---EeeeCCCC-Cc---CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEec
Confidence 1111 11111111 12 89999999975 2225667765555999999987 9999999999999999999
Q ss_pred cccCCcccCCccccccCCC-Cccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh
Q 012138 266 IQSGLARSGRMLASDWEEV-RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342 (470)
Q Consensus 266 v~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~ 342 (470)
+|+++............+. ..|.+ +++|.++++. ++|+++.+ ..+..++++.+.
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~-g~g~~~~~----------------------~~~~~~~l~~l~ 242 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL-GCSAVLVR----------------------ALKLWATLRRFG 242 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc-chHHHHHH----------------------HHHHHHHHHHHh
Confidence 9985432111100000111 23543 6779887776 77877655 333334444444
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCC-CchhHHHHHHHHHHcCceeccC----C
Q 012138 343 D---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTA-LPVSAYDICLKMKERGILAKPT----H 413 (470)
Q Consensus 343 ~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv~~~~~----~ 413 (470)
. ++..++..++.+++.+.|+++. .+..+ .+.+.++.|.+.... .+....++.++|.++|+++.+. .
T Consensus 243 ~~g~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~ 317 (345)
T cd06450 243 RDGYGEHIDRIVDLAKYLAELIRADP-----GFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGG 317 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-----CeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECC
Confidence 3 4456666667777777766532 22222 245667777665420 0135678999999996554332 3
Q ss_pred CCEEEEecCCCC-CHHHHHHHHHHHHH
Q 012138 414 DTIVRLTPPLSI-SSNELQEGSKALHD 439 (470)
Q Consensus 414 ~~~iR~~~~~~~-t~e~i~~~~~~l~~ 439 (470)
..++|+++...+ |++|++++++.|++
T Consensus 318 ~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 318 PNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 578999988765 99999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-19 Score=175.96 Aligned_cols=342 Identities=16% Similarity=0.164 Sum_probs=203.5
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~ 151 (470)
..|..||||.+-.+. ..+.++..+++......+ ....-..+|++.++++++.+++++|+||++|+..++++
T Consensus 17 ~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~~Y--~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~a 87 (431)
T cd00617 17 RSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDEAY--AGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSI 87 (431)
T ss_pred CCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCCcc--CCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHH
Confidence 346677888765332 245555555554332211 12344689999999999999999999999999999987
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCe-----eeecCC-CHHHHHHHHHhcC-CC
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH-----LKVDFG-DITALEKIFKESG-DQ 224 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-d~~~Le~~l~~~~-~~ 224 (470)
+.. +|+ .| ...+.|..........++.+.. .+..+.. ..+..| |+++|++++++.+ .+
T Consensus 88 l~~---------pGD-~V-~~~~~f~~~~~~i~~~Ga~pv~----v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~ 152 (431)
T cd00617 88 LLK---------PGR-TV-PSNMHFDTTRGHIEANGAVPVD----LVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAEN 152 (431)
T ss_pred hCC---------CCC-EE-ccCCcccchHHHHHhCCCEeEE----EecccccccccccCCCCCcCHHHHHHHhCcccCCC
Confidence 754 566 44 4555554332222222222211 1111000 011111 8999999998642 35
Q ss_pred eEEEEEccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEecccc-C---C------cccCCccc---cccCCCCcceee
Q 012138 225 IAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G---L------ARSGRMLA---SDWEEVRPDMVI 290 (470)
Q Consensus 225 ~~~vi~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g---~------g~~G~~~~---~~~~~~~pdi~s 290 (470)
+++|+++..+|++ |.++ +.+.+++|.++|++||++||+|+++. + | |+.+.... .+.+.. -|..+
T Consensus 153 ~~~I~v~~p~N~~gG~~~-s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~-sd~~~ 230 (431)
T cd00617 153 IPYIVLTITNNTAGGQPV-SMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSY-ADGCT 230 (431)
T ss_pred ccEEEEECCcCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhcc-CCEEE
Confidence 7888887769986 8888 89999999999999999999999976 1 1 11111110 000111 13333
Q ss_pred cc--ccccCCCccee-EEEecH-HHHhhcCcC----CccCCCC-CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012138 291 LG--KALGGGVIPVS-AVLADK-EVMLCIQPG----EHGSTFG-GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 361 (470)
Q Consensus 291 ~s--K~l~gG~~~ig-~v~~~~-~~~~~~~~~----~~~~t~~-~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L 361 (470)
+| |.. +. ++| ++++++ ++++.++.. ....+++ .+...+++...+|+...+.+..++..+.++++.+.|
T Consensus 231 mS~~K~~--~~-~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L 307 (431)
T cd00617 231 MSAKKDG--LV-NIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRL 307 (431)
T ss_pred EEeecCC--CC-ccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33 222 22 444 677775 588777532 1112233 244444444336654322233333344457788888
Q ss_pred HHHHhhCCCceEEEeccceeEEEEeccCCC-------chhHHHHHHHHHHc-Cceecc-----------C------CCCE
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-------PVSAYDICLKMKER-GILAKP-----------T------HDTI 416 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~l~~~-Gv~~~~-----------~------~~~~ 416 (470)
++.+ +..+.+.|.++.+ ++.... ..++.+++.+|.++ ||.+.. + ....
T Consensus 308 ~~~G------~~v~~P~Ggh~v~-~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~ 380 (431)
T cd00617 308 DEAG------VPIVEPAGGHAVF-IDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELEL 380 (431)
T ss_pred HHCC------CCccCCCcceEEE-EEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccce
Confidence 7753 3344556655554 332210 12478888777665 888531 1 1368
Q ss_pred EEEecCC-CCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 417 VRLTPPL-SISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 417 iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
+|+..|. ..|.++++.++++|.++++ +...+.-
T Consensus 381 ~rl~~prr~~t~~~~~~~~~~~~~~~~-~~~~~~~ 414 (431)
T cd00617 381 VRLAIPRRVYTQDHMDYVAAAVIALYE-RREDIRG 414 (431)
T ss_pred eEEeccccccCHHHHHHHHHHHHHHHh-hHhhCCC
Confidence 9998876 7899999999999999998 7655554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=178.70 Aligned_cols=287 Identities=18% Similarity=0.227 Sum_probs=184.5
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...++++.++++.|.+.+++++||++|+..++..+.. +|+ .|++..+. |+.+.......
T Consensus 50 r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~---------~Gd-~Vl~~~~~-~~~t~~~~~~~----- 113 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLLQ---------AGD-HVVASRSL-FGSTVGFISEI----- 113 (380)
T ss_pred cCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEecCC-cchHHHHHHHH-----
Confidence 355677899999999999988999999999999999987654 466 56665555 44443221100
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
...+ ...+..++.+|++++++++++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+|++|+.+.
T Consensus 114 ~~~~---g~~v~~v~~~d~~~l~~~i~~---~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~~- 182 (380)
T TIGR01325 114 LPRF---GIEVSFVDPTDLNAWEAAVKP---NTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATPV- 182 (380)
T ss_pred HHHh---CCEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcccc-
Confidence 0000 012355666789999988865 7899999988999999998 9999999999999999999997321
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcce-eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
... .....+|++ +++|.++| |. ++ |++++++++++.++..........++..++.+...++.+.. ..+
T Consensus 183 ~~~-----pl~~g~Divv~S~sK~l~g~g~-~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~ 254 (380)
T TIGR01325 183 LQQ-----PLKLGADVVVYSATKHIDGQGR-VMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQ 254 (380)
T ss_pred cCC-----chhhCCCEEEeeccceecCCCC-eEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHH
Confidence 111 112235766 68899986 55 55 67778888877765432222223566666666655555543 345
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHc--Ccee----
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GILA---- 409 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~~---- 409 (470)
+..+++.++.+.|++... .||... ....+.|.++.++++ +. ....+|.+.|+-- ++..
T Consensus 255 ~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~~--~~~~~f~~~l~~~~~~~s~G~~~ 331 (380)
T TIGR01325 255 KQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-DR--AAAWKVLDAVELVSITNNLGDAK 331 (380)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CH--HHHHHHHHcCCcceEcccCCCCC
Confidence 555566666666665321 122110 012356889999886 22 2556677666422 2111
Q ss_pred ----ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 410 ----KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 410 ----~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.|. .++.|||+..+ |+.+.+++-|+++|
T Consensus 332 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al 380 (380)
T TIGR01325 332 STITHPATTTHGRMQPEERAAAGIGDGLVRLSVGL----EDVDDLIADLKRAL 380 (380)
T ss_pred eeeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHhhC
Confidence 111 14689999554 56677777776653
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=176.90 Aligned_cols=289 Identities=19% Similarity=0.233 Sum_probs=183.5
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDN 190 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~ 190 (470)
..+.++...+|++.|+++.|.+.+++++||+.|+..++..+.. +|+ .|++....| +.+..... ....
T Consensus 65 ~r~~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~---------~Gd-~Vl~~~~~~-~~t~~~~~~~~~~- 132 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLG---------AGD-RLVAARSLF-GSCFVVCNEILPR- 132 (403)
T ss_pred eCCCCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhC---------CCC-EEEEccCCc-chHHHHHHHHHHH-
Confidence 3356777899999999999999999999999999998876654 566 566555443 33322111 0000
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g 269 (470)
....+..++.+|++++++++++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+|++|+ +
T Consensus 133 --------~G~~v~~vd~~d~~~l~~ai~~---~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 133 --------WGVETVFVDGEDLSQWEEALSV---PTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred --------cCcEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCCcc
Confidence 0012355566689999999976 7899999988999999998 9999999999999999999997 2
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcce-eEEEecHHHHh-hcCcCCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
+.. .. . ..+ .|++ +++|.++| |. ++ |+++++++.+. .++..........++..++.+...|+.+..
T Consensus 198 ~~~--~~--~-~~g--aDivv~S~tK~l~g~g~-~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~~- 268 (403)
T PRK07810 198 LLQ--RG--L-PLG--ADVVVYSGTKHIDGQGR-VLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLAL- 268 (403)
T ss_pred ccC--Ch--h-hcC--CcEEEccCCceecCCcC-ceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHHH-
Confidence 211 11 1 123 3655 67799985 65 55 77777776554 233221222335788888888777776543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCC--CchhHHHHHHHHHHc----
Q 012138 345 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTA--LPVSAYDICLKMKER---- 405 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~--~~~~~~~~~~~l~~~---- 405 (470)
..++..++..++.+.|++... .||.... ...+.|.++.++++... ....+.+|++.|+--
T Consensus 269 -R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~ 347 (403)
T PRK07810 269 -RVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISN 347 (403)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEec
Confidence 445555566666666654321 1221000 11266889999886421 012345566644311
Q ss_pred ------CceeccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 406 ------GILAKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 406 ------Gv~~~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.++..|. .++.+||+..+ |+++++++-|.++|
T Consensus 348 slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGl----E~~~dli~dl~~Al 402 (403)
T PRK07810 348 NLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGL----EDTDDLIADLDRAL 402 (403)
T ss_pred cCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 1222221 14689999554 56777777777665
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=172.36 Aligned_cols=308 Identities=16% Similarity=0.184 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~ 173 (470)
++-.+++.+.++....+. ..+...+++++++++++.+++++++||++|+..++.++.. .+|+ .|++..
T Consensus 11 ~~~~~~~~~~l~~~~~~g---~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~--------~~Gd-~Viv~~ 78 (375)
T PRK11706 11 GTELDYIQQAMSSGKLCG---DGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDI--------QPGD-EVIMPS 78 (375)
T ss_pred HHHHHHHHHHHHcCCccC---CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCC--------CCCC-EEEECC
Confidence 444667777776543321 2456789999999999999999999999999988875521 1455 788888
Q ss_pred cCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 174 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
++|..........+.... +.+..++...+ |++++++++++ ++++|++. +++|...+ +++|.++
T Consensus 79 ~t~~~~~~~~~~~G~~~v----~~d~d~~~~~~---d~~~le~~i~~---~tk~i~~~---~~~G~~~~----~~~i~~l 141 (375)
T PRK11706 79 YTFVSTANAFVLRGAKIV----FVDIRPDTMNI---DETLIEAAITP---KTRAIVPV---HYAGVACE----MDTIMAL 141 (375)
T ss_pred CCcHHHHHHHHHcCCEEE----EEecCCCcCCc---CHHHHHHhcCC---CCeEEEEe---CCCCCccC----HHHHHHH
Confidence 887654333322222211 11221222222 79999999876 68888843 46888886 9999999
Q ss_pred HHhcCcEEEEeccccCCc-ccCCccccccCCCCcceeecc----ccccCCCcceeEEEecHHHHhhcCcCC---------
Q 012138 254 CSKYNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLADKEVMLCIQPGE--------- 319 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g-~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~~~~~~~~~~~~--------- 319 (470)
|++||++||+|++|+-+. ..|+.. +..-|+.+|| |.++.|. +.++++.++++.++++...
T Consensus 142 a~~~~i~vIeD~a~a~g~~~~~~~~-----g~~~~~~~~Sf~~~K~l~~g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~ 215 (375)
T PRK11706 142 AKKHNLFVVEDAAQGVMSTYKGRAL-----GTIGHIGCFSFHETKNYTAGE-GGALLINDPALIERAEIIREKGTNRSQF 215 (375)
T ss_pred HHHcCCEEEEECccccccccCCeee-----ecCcCEEEEeCCCCccccccC-CeEEEECCHHHHHHHHHHHHcCCCcchh
Confidence 999999999999998221 223221 1122677777 9998776 6667777788776443211
Q ss_pred ------------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceEEEeccceeEE
Q 012138 320 ------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 320 ------------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~~~~~~g~~~~ 383 (470)
.+.++-.+.+.++.+.+.|+.+ +.+.++.+++.+++.+.|..+.. .+|...........++.
T Consensus 216 ~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T PRK11706 216 FRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFY 293 (375)
T ss_pred hccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEE
Confidence 1233335667777777777665 33556677777777777765421 11100000111223444
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccC----C----------------------CCEEEEecCCCCCHHHHHHHHHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPT----H----------------------DTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~----------------------~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+.++.. .+..++.+.|.++||.+... . .+.+.+-.....+++|++..++.|
T Consensus 294 ~~~~~~---~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i 370 (375)
T PRK11706 294 IKLRDL---EDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTI 370 (375)
T ss_pred EEECCc---CCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHH
Confidence 444432 26789999999999985411 0 233444334457899999999999
Q ss_pred HHHH
Q 012138 438 HDVL 441 (470)
Q Consensus 438 ~~~l 441 (470)
++++
T Consensus 371 ~~~~ 374 (375)
T PRK11706 371 LEFF 374 (375)
T ss_pred HHHh
Confidence 8875
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=177.03 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=185.0
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+|++.++++.|.+..+.++||+.|+..++..... +|+ .|++..+.|.+.............
T Consensus 61 r~~~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l~---------~Gd-~Vl~~~~~y~~~~~~~~~~~~~~G- 129 (398)
T PRK07504 61 RYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVK---------AGD-HVVAARALFGSCRYVVETLLPRYG- 129 (398)
T ss_pred cCCCchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHhC---------CCC-EEEEcCCchhHHHHHHHHHHhhcC-
Confidence 345677899999999999998888899999999887765543 566 677777776543222111100000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
..+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|+++|+++|+|++|+...
T Consensus 130 --------~~v~~vd~~d~e~l~~ai~~---~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~~~- 193 (398)
T PRK07504 130 --------IESTLVDGLDLDNWEKAVRP---NTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFATPL- 193 (398)
T ss_pred --------eEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccccc-
Confidence 11233444589999998875 7899998888999999998 9999999999999999999997211
Q ss_pred cCCccccccCCCCccee--eccccccC-CCccee-EEEecHHHHh-hcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPVS-AVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig-~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
.... ..++ .|++ +++|.++| |. ++| +++++++.+. .++..........++..++.+...|+.+.. ..
T Consensus 194 ~~~~---~~~g--aDivv~S~sK~l~g~g~-~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~--R~ 265 (398)
T PRK07504 194 FQKP---LELG--AHIVVYSATKHIDGQGR-CLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPV--RV 265 (398)
T ss_pred cCCc---hhhC--CCEEEeeccccccCCcc-ceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHH--HH
Confidence 1111 1123 3554 77899975 76 775 5667766554 232211222335788888888887776643 44
Q ss_pred HHHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec----
Q 012138 348 ERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK---- 410 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~---- 410 (470)
++..++..++.+.|++... .||.... ..++.|.++.+++.... ..+.+|++.|.--.+.++
T Consensus 266 ~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~~~~~l~~~~~~~slG~~ 343 (398)
T PRK07504 266 RQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGK--EAAFRFLNALKIVRISNNLGDA 343 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCH--HHHHHHHHhCCcceecccCCCC
Confidence 4555666667676665321 2221111 12355889999885321 245566666542222111
Q ss_pred ------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 ------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 ------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.+||+..+ |+.+++++-|.++|+
T Consensus 344 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 394 (398)
T PRK07504 344 KSLITHPATTTHKNLSPEARAELGISEGFLRLSAGL----EDTDDLIEDLAAALK 394 (398)
T ss_pred CeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 11 15789999554 566777777777776
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=165.83 Aligned_cols=308 Identities=18% Similarity=0.235 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~ 173 (470)
.+..+++.+.+++..... .+.-.++++.++++.|.++++.++|||.|++++++++- +.+|| .||+..
T Consensus 15 ~~e~~~v~~vl~sg~i~~----G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~--------ig~GD-eVI~ps 81 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG----GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA--------IGPGD-EVIVPS 81 (374)
T ss_pred hHHHHHHHHHHHcCCeec----ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC--------CCCCC-EEEecC
Confidence 556777888887765543 34568999999999999999999999999999999553 12666 777877
Q ss_pred cCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 174 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
.+|-......+..+..|.+ ....++...+ |++.||++|++ ++++||.-.. .|...+ +++|.++
T Consensus 82 ~TfvATan~i~~~Ga~PVF----vDid~~T~ni---d~~~ie~aIt~---~tKAIipVhl---~G~~~d----m~~i~~l 144 (374)
T COG0399 82 FTFVATANAVLLVGAKPVF----VDIDPDTLNI---DPDLIEAAITP---RTKAIIPVHL---AGQPCD----MDAIMAL 144 (374)
T ss_pred CchHHHHHHHHHcCCeEEE----EecCCcccCC---CHHHHHHHccc---CCeEEEEehh---ccCCCC----HHHHHHH
Confidence 7875444333433333333 3444444445 99999999997 7999995442 456666 9999999
Q ss_pred HHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEE-ecHHHHhhcCcC---------
Q 012138 254 CSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVL-ADKEVMLCIQPG--------- 318 (470)
Q Consensus 254 ~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~-~~~~~~~~~~~~--------- 318 (470)
|++||++||.|.+|+ |--+.|+. .|-.-|+.+|| |.++.| -.|+++ -++++.++++..
T Consensus 145 a~~~~l~vIEDaAqa~Ga~y~gk~-----vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~ 217 (374)
T COG0399 145 AKRHGLPVIEDAAQAHGATYKGKK-----VGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDA 217 (374)
T ss_pred HHHcCCeEEEEcchhccCeecCcc-----cccccceEEEEecCCCCcccc--CceEEEeCCHHHHHHHHHHHHhCcCCCc
Confidence 999999999999998 43344432 12223666666 878744 233444 567777665421
Q ss_pred -------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-hhCCCceEEEeccceeEEEEeccCC
Q 012138 319 -------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ-QQFPNYVKEVRGRGLFNAVEFDKTA 390 (470)
Q Consensus 319 -------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~p~~~~~~~~~g~~~~~~~~~~~ 390 (470)
..|..+..+.+.+|.+++.|+.++ ++.++.++..+.+.+.|.++. ...|.........-.++.+.++..
T Consensus 218 ~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~- 294 (374)
T COG0399 218 VFKYLHEELGYNYRLTEIQAAIGLAQLERLD--EINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE- 294 (374)
T ss_pred cccceeeecccccCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC-
Confidence 124445577788888888887664 477788888888888888753 122201111111122333334432
Q ss_pred CchhHHHHHHHHHHcCcee----ccCC-----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 391 LPVSAYDICLKMKERGILA----KPTH-----------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~Gv~~----~~~~-----------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+...+.+.|.++||.. .|.+ ...+.+-....++++++++.++.|.+++.
T Consensus 295 -~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 295 -GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred -CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence 236788999999997652 2311 35566665567899999999999999886
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=176.24 Aligned_cols=291 Identities=14% Similarity=0.141 Sum_probs=187.2
Q ss_pred CCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 111 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
+..+.++...+|++.++++.|.+.+++++||++|+..++..+.. +|+ .|++..+.|. .+.........
T Consensus 53 y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~---------~Gd-~Vi~~~~~y~-~t~~~~~~~~~- 120 (391)
T TIGR01328 53 YSRLGNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILK---------AGD-HLISDECLYG-CTFALLEHALT- 120 (391)
T ss_pred eeCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEecCcch-HHHHHHHHHHh-
Confidence 33456677899999999999999999999999999998876654 466 6777777653 32221111000
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
.....+..++.+|++++++++++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+|++|+..
T Consensus 121 -------~~G~~~~~vd~~d~e~l~~~i~~---~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a~~ 186 (391)
T TIGR01328 121 -------KFGIQVDFINMAIPEEVKAHIKD---NTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFATP 186 (391)
T ss_pred -------cCCeEEEEECCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCchh
Confidence 00011345555689999988875 7899998888999999998 999999999999999999999721
Q ss_pred cccCCccccccCCCCccee--eccccccC-CCcc-eeEEEecHHHHhhcCcCCc--cCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGG-GVIP-VSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~-ig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
..+... +...|++ +++|.+++ |. + .|++++++++++.++.... ......++..++.+...|+.+.
T Consensus 187 -~~~~~~-----~~g~Divv~S~sK~lgg~g~-~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl~-- 257 (391)
T TIGR01328 187 -MLTNPV-----ALGVDVVVHSATKYIGGHGD-VVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLN-- 257 (391)
T ss_pred -ccCCch-----hcCCCEEEccccccccCCCC-ceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcHH--
Confidence 122211 1223554 77899984 54 4 5777888988877653211 1123457777777666555442
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCcee
Q 012138 345 KLAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA 409 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~ 409 (470)
...++..++..++.+.|++... .||... ...++.|.++.++++... ....+|.+.|.- .+...
T Consensus 258 ~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s~ 335 (391)
T TIGR01328 258 IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGF--AGAKKLLNNLKLIRLAVSL 335 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCH--HHHHHHHHhCCcceEecCC
Confidence 3455666677777777765321 222110 112356889999886321 234556655531 12111
Q ss_pred c--------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 K--------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 ~--------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. |. .++.|||++.+ |+.+.+++-|.++|+
T Consensus 336 G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 389 (391)
T TIGR01328 336 GDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALD 389 (391)
T ss_pred CCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 0 11 14689999554 667888888888876
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=170.82 Aligned_cols=310 Identities=16% Similarity=0.176 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEE
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSC 172 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~ 172 (470)
++-.+++.+.++.... +..+...+|++.+++++|.+.+++++||++|+.+++..+ .. +|+ .||+.
T Consensus 14 ~~e~~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~---------~Gd-~Viv~ 79 (379)
T PRK11658 14 DEELAAVKEVLRSGWI----TTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIG---------PGD-EVITP 79 (379)
T ss_pred HHHHHHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCC---------CCC-EEEEC
Confidence 5567777777765433 234567899999999999999999999999999999866 32 455 77788
Q ss_pred ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 173 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
.++|.+........+..+. +.+..++...+ |++++++++++ ++++|+ | .+++|...+ +++|.+
T Consensus 80 ~~~~~~~~~~~~~~G~~~v----~vd~~~~~~~~---d~~~l~~~i~~---~tkav~--~-~~~~G~~~d----~~~i~~ 142 (379)
T PRK11658 80 SLTWVSTLNMIVLLGATPV----MVDVDRDTLMV---TPEAIEAAITP---RTKAII--P-VHYAGAPAD----LDAIRA 142 (379)
T ss_pred CCcHHHHHHHHHHcCCEEE----EEecCCCcCCc---CHHHHHHhccc---CCeEEE--E-eCCCCCcCC----HHHHHH
Confidence 8887654332222221111 11111111122 88999999875 788887 3 456898887 999999
Q ss_pred HHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEe-cHHHHhhcCcCC---------
Q 012138 253 LCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGE--------- 319 (470)
Q Consensus 253 l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~~--------- 319 (470)
+|++||+++|+|++|+ |....|... ..++. ++.+|+ |.+++| +.|+++. ++++.+.++...
T Consensus 143 ~a~~~gi~vi~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~ 216 (379)
T PRK11658 143 IGERYGIPVIEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAF 216 (379)
T ss_pred HHHHcCCeEEEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchh
Confidence 9999999999999998 543344321 22343 677777 667665 5666775 477766553211
Q ss_pred ---------------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-EeccceeEE
Q 012138 320 ---------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNA 383 (470)
Q Consensus 320 ---------------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~-~~~~g~~~~ 383 (470)
.+..+..+.+.++.+...++.+ +++.++.+++.+++.+.|.++.......... .......+.
T Consensus 217 ~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 294 (379)
T PRK11658 217 DRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFI 294 (379)
T ss_pred hhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEE
Confidence 1223335566666666666554 4466788888888888887642110000000 001112333
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccC----C---------------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPT----H---------------------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~---------------------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+.++....+.+..++.+.|.++||.+... + ...+.+-.....|++++++.++.|+
T Consensus 295 ~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~ 374 (379)
T PRK11658 295 IRVDEERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQ 374 (379)
T ss_pred EEECCccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHH
Confidence 43432111236788999999999876521 0 2344444445689999999999999
Q ss_pred HHHh
Q 012138 439 DVLE 442 (470)
Q Consensus 439 ~~l~ 442 (470)
+++.
T Consensus 375 ~~~~ 378 (379)
T PRK11658 375 QIAG 378 (379)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=176.89 Aligned_cols=287 Identities=17% Similarity=0.200 Sum_probs=180.4
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~ 192 (470)
+.++...++++.++++.|.+.+++++||++|+..++..+.+ +|+ .||+..+.|.+ +..... ....
T Consensus 58 ~~~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~~---------~Gd-~Vi~~~~~y~~-t~~~~~~~~~~--- 123 (390)
T PRK08133 58 FTNPTVTMFQERLAALEGAEACVATASGMAAILAVVMALLQ---------AGD-HVVSSRSLFGS-TVSLFEKIFAR--- 123 (390)
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEccCcchh-HHHHHHHHHHH---
Confidence 45677899999999999999999999999999999887654 466 66666666533 222110 0000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
....+..++.+|++++++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++++...
T Consensus 124 ------~G~~v~~vd~~d~~~l~~~i~~---~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~~- 189 (390)
T PRK08133 124 ------FGIETTFVDLTDLDAWRAAVRP---NTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTPA- 189 (390)
T ss_pred ------cCcEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcccc-
Confidence 0012355666689999998875 7899999888999999998 9999999999999999999986211
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcce-eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
..... ..+ .|++ +++|.++| |. ++ |++++++++++.+...........++..+..+...++.+. ...+
T Consensus 190 ~~~pl---~~g--~Divv~S~sK~~~g~g~-~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~--~R~~ 261 (390)
T PRK08133 190 LQQPL---KLG--ADVVIHSATKYLDGQGR-VLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLS--LRME 261 (390)
T ss_pred cCCch---hhC--CcEEEeecceeecCCcc-eEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHH--HHHH
Confidence 11111 122 3554 77899985 65 66 5666777776655432222233456666665555544332 2333
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHc--Ccee----
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GILA---- 409 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~~---- 409 (470)
+..++...+.+.|++... .||... ....+.|.++.+++.... ....+|.+.|+-- ++..
T Consensus 262 ~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~--~~~~~f~~~l~l~~~~~slG~~~ 339 (390)
T PRK08133 262 AHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGR--EAAWRVIDATRLISITANLGDTK 339 (390)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCH--HHHHHHHHhCCcceEeccCCCcc
Confidence 444455556665554311 122110 012356889999885321 2355666655321 2111
Q ss_pred ----ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 ----KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 ----~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+.+.+++-|+++|+
T Consensus 340 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 389 (390)
T PRK08133 340 TTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA 389 (390)
T ss_pred eeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence 111 15689999554 567888888887775
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-19 Score=173.61 Aligned_cols=285 Identities=14% Similarity=0.144 Sum_probs=179.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcccccc---chhcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL---AAISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~---~~~~~~~~~ 190 (470)
..++...++++.++++.|.+..+.++||++|+..++..+.. +|+ .|++..+.|.+... ......+
T Consensus 42 ~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~~---------~Gd-~Vl~~~~~~~~ty~~~~~~~~~~G-- 109 (376)
T PRK06460 42 EANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLK---------PGN-SVLVHRDMFGRSYRFFTDYLKNWG-- 109 (376)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEecCCcCcHHHHHHHHHHhhC--
Confidence 45677899999999999887777778899999988886654 566 56665554422111 1111111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+..++.++.+.+++++++ ++++|+++.++||+|.+.+ +++|.++|++||+++|+||+|...
T Consensus 110 ----------~~v~~~~~~~~~~l~~~~~~---~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~ 172 (376)
T PRK06460 110 ----------VNVDASNPGSDNIIEKAKSK---RYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTP 172 (376)
T ss_pred ----------cEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc
Confidence 11234444555556554433 7889998888999999998 889999999999999999999732
Q ss_pred cccCCccccccCCCCccee--eccccccC--CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
..... . ..+ .|++ |++|.++| +. ++|++++++++++.++......+.+.++..+..+...++.++ ..
T Consensus 173 -~~~~~--l-~~~--~divv~S~sK~l~G~~~~-~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~--~r 243 (376)
T PRK06460 173 -INQKP--L-ELG--ADIVVHSASKFLAGHNDV-IAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLK--IR 243 (376)
T ss_pred -ccCCh--h-hcC--CCEEEeecceeccCCCCc-eEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH--HH
Confidence 11111 1 122 3554 88999974 34 789999999998877643333333455655555544555443 34
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCcee--
Q 012138 347 AERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA-- 409 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~-- 409 (470)
.++..+++.++.+.|++... .||... ....+.|.++.++++.+. ....+|++.|.- .+...
T Consensus 244 ~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~--~~~~~~~~~l~~~~~~~s~Gg 321 (376)
T PRK06460 244 MDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQ--ESALKVMKSLKLIIPAQTLGG 321 (376)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcH--HHHHHHHHhCCcceeccCCCC
Confidence 56667777777777765321 222110 012356889999886431 245566665531 11111
Q ss_pred ------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 ------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 ------~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+.+.+++.|.++|+
T Consensus 322 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 373 (376)
T PRK06460 322 VNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALS 373 (376)
T ss_pred CceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 111 15789999554 567778888877776
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=173.89 Aligned_cols=290 Identities=17% Similarity=0.158 Sum_probs=187.4
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
..+.++...+|++.++++.+.+.+++++||++|+..++..+.. +|+ .|++..++|.+.......+.....
T Consensus 46 ~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all~---------~GD-~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 46 SRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLG---------PDD-LLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC---------CCC-EEEEcCCCcHHHHHHHHHHHhhcC
Confidence 3456778899999999999888999999999999999987754 455 788888888543221111111111
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.. +...+..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|+++|+++|+||+|..+.
T Consensus 116 ~~---------v~~~d~~d~~~l~~ai~~---~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 116 FR---------VLFVDQGDEQALRAALAQ---KPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred eE---------EEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence 10 122223478999998875 7899998877999999998 9999999999999999999997321
Q ss_pred ccCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.. .. .. .+ .|++ +++|.++| ++ ..|+++. ++++.+.+.......+...+|+.+..++..++.+.. .
T Consensus 180 ~~-~p--l~-~g--aDivv~S~sK~l~G~~~~-~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~--R 250 (382)
T TIGR02080 180 LQ-NP--LA-LG--ADLVLHSCTKYLNGHSDV-IAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVA--R 250 (382)
T ss_pred cC-Cc--hh-hC--CCEEEeecceeccCCCCc-eeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHH--H
Confidence 11 11 11 22 3554 88899874 55 7888765 677777665433334556788888887766665533 2
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec---
Q 012138 347 AERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK--- 410 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~--- 410 (470)
+++..++...+.+.|++... .||.... ...+.|.++.+++.... ....+|.+.|.--.+.++
T Consensus 251 ~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s~G~ 328 (382)
T TIGR02080 251 MRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGE--QTVRRFLGGLSLFTLAESLGG 328 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcH--HHHHHHHHcCCcceEeccCCC
Confidence 44555566666666654221 2221100 12356889999886321 234456655542111111
Q ss_pred -------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.|||+..+ |+.+++++-|.++|+
T Consensus 329 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~ 380 (382)
T TIGR02080 329 VESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLR 380 (382)
T ss_pred CcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 11 14689999554 567778888877775
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=157.81 Aligned_cols=328 Identities=16% Similarity=0.174 Sum_probs=210.5
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHh
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKW 155 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~ 155 (470)
.+|+-|.....| -.+++++|.++.-. ...| ..+...+|+++.++++|.|.-+|+.|||.+|..+++.-..-
T Consensus 23 ~vDLRSDTvT~P----TdeMr~am~eA~vg----DdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~ 94 (384)
T KOG1368|consen 23 SVDLRSDTVTVP----TDEMRRAMAEASVG----DDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQ 94 (384)
T ss_pred ccccccccccCC----hHHHHHHHhhcccC----cccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcC
Confidence 346666543332 35666666655422 1112 34456899999999999999999999999999999976651
Q ss_pred chhcccCCCCCcEEEE-EccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhc-----CCCeEEE
Q 012138 156 GYVKKKFSIDEAIIVS-CCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKES-----GDQIAGF 228 (470)
Q Consensus 156 ~~~~~~~~~g~~~ii~-~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~-----~~~~~~v 228 (470)
+|. .||+ .....|-+..+.++.-+.-.. .++.+ +...+ |++++|+++... .+.+++|
T Consensus 95 --------rg~-eii~gd~~HI~~~E~gg~s~l~gv~~----~tv~~e~dgtm---~ledIe~~ir~~~GD~H~p~T~LI 158 (384)
T KOG1368|consen 95 --------RGS-EIIVGDRAHIHRYEQGGISQLAGVHV----RTVKNENDGTM---DLEDIEAAIRVPKGDCHMPPTKLI 158 (384)
T ss_pred --------CCc-eEEeccchheeehhccChhhhcccee----EeeeeCCCCee---eHHHHHHhhcCCCCCccCCCceEE
Confidence 344 4554 443334444444332211000 00000 11222 799999999743 2468999
Q ss_pred EEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEeccccCC--cccCCccccccCCCCcce--eeccccccCCCccee
Q 012138 229 LFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPDM--VILGKALGGGVIPVS 303 (470)
Q Consensus 229 i~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~--g~~G~~~~~~~~~~~pdi--~s~sK~l~gG~~~ig 303 (470)
.+|..++ -+|.++ |.+|+.++.++|++||+.|.+|-+.-.= ...|- ..+.+.-..|- ++|||+++. |+|
T Consensus 159 clENT~~~~Gg~vl-Ple~~~~v~~lak~~glkLH~DGARi~NAavasgV--~vk~i~~~fDSVsiCLSKglgA---PVG 232 (384)
T KOG1368|consen 159 CLENTHNNCGGKVL-PLEELDRVKALAKRHGLKLHMDGARIFNAAVASGV--PVKKICSAFDSVSICLSKGLGA---PVG 232 (384)
T ss_pred EeeccccccCceEe-eHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCC--CHHHHHHhhhhhhhhhhccCCC---Ccc
Confidence 9988555 566888 9999999999999999999999765310 00111 11111112343 489999986 555
Q ss_pred E-EEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccc
Q 012138 304 A-VLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRG 379 (470)
Q Consensus 304 ~-v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g 379 (470)
- ++++++++++.+.. ..++.+-.+.+.+++++.+|+.--. ..++-.+++..+.+.++... .+-..+. -+.
T Consensus 233 SViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~--~L~~dHk~A~~lAe~~~~~~----~i~v~v~a~et 306 (384)
T KOG1368|consen 233 SVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVP--LLRADHKRAKELAEYINTPE----EIRVEVPAVET 306 (384)
T ss_pred cEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHHhcccc----ceeeecchhhc
Confidence 4 55899888765432 3455666677788888877763211 33344444555555554321 1122222 455
Q ss_pred eeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH-HHHh
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH-DVLE 442 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~-~~l~ 442 (470)
.|..+.+..+. .+++++++.+.+.||++.++....+|+.+...+|+++++..+..+. .++.
T Consensus 307 Niv~~~l~q~~--~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~ 368 (384)
T KOG1368|consen 307 NIVNMVLCQAR--LTAEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKFLK 368 (384)
T ss_pred ceeeeeccccc--CCHHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHHHh
Confidence 66666554443 5889999999999999998877889999999999999999999994 4555
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=170.62 Aligned_cols=289 Identities=9% Similarity=-0.005 Sum_probs=184.8
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|++.|+++.|.+.+++++||++|+..++..+.. +|+ .||+.++.|++.............
T Consensus 47 ~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~---------~GD-~Vl~~~~~y~~t~~~~~~~~~~~g-- 114 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVK---------AGD-HVLMVDSAYEPTRYFCDIVLKRMG-- 114 (377)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcC---------CCC-EEEEcCCCcHHHHHHHHHHHHhcC--
Confidence 45677899999999999999999999999999999987654 566 677778888764321100000000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+..++.++.+++++++++ ++++|++|.+.||+|.+.+ +++|.++|++||+++|+|++|+. +..
T Consensus 115 -------i~v~~~d~~~~e~l~~~i~~---~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a~-g~~ 179 (377)
T TIGR01324 115 -------VDITYYDPLIGEDIATLIQP---NTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWAA-GLL 179 (377)
T ss_pred -------cEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcc-ccc
Confidence 01223333344788888865 7999999999999999988 99999999999999999999982 212
Q ss_pred CCccccccCCCCccee--eccccccC--CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
.+. ..+| .|++ +++|.++| +. -.|+++++++.++.+...........+|..+......++.+. -.+++
T Consensus 180 ~~p---l~~g--aDivv~S~tK~l~G~~d~-~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~ 251 (377)
T TIGR01324 180 FKP---LEHG--VDISIQAGTKYLVGHSDI-MIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG--VRLKQ 251 (377)
T ss_pred cCc---cccC--ceEEEecCceeccCCCCc-eEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHH--HHHHH
Confidence 221 1233 4666 66899984 34 578888888877766532222233456766666666665442 23444
Q ss_pred HHHHHHHHHHHHHHHH----hhCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----
Q 012138 350 SAHLGEELRQHLFKIQ----QQFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---- 412 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~----~~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---- 412 (470)
..+++..+.+.|++.. -.||... ....+.|.++.++++... .....+|.+.|+-.++.++-|
T Consensus 252 ~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~-~~~~~~~~~~l~~~~~~~slG~~~s 330 (377)
T TIGR01324 252 HQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT-QKQVHAFLDHLQLFGLGYSWGGYES 330 (377)
T ss_pred HHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC-HHHHHHHHHhCCcceEeccCCCccc
Confidence 4555555555555532 1222100 012356889999886311 135667777776543332111
Q ss_pred -------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 413 -------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 413 -------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++.+||++.+ |+.+++++-|.++|+
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~ 375 (377)
T TIGR01324 331 LALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFE 375 (377)
T ss_pred eeecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHh
Confidence 13578998554 567777777777776
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=170.22 Aligned_cols=290 Identities=17% Similarity=0.150 Sum_probs=185.5
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
..+.++...+|+++|+++.+.+.+++++||++|+..++..+.. +|+ .|++.++.|++.......+.....
T Consensus 47 ~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~---------~GD-~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 47 SRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK---------PGD-LLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred eCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC---------CCC-EEEEcCCCcHHHHHHHHHHHhhCC
Confidence 3456778899999999999888899999999999999986654 465 788888888653321111110000
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
. .+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|+++|+++|+||+|....
T Consensus 117 i---------~v~~vd~~d~e~l~~~l~~---~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~~ 180 (386)
T PRK08045 117 Y---------RVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSPA 180 (386)
T ss_pred e---------EEEEeCCCCHHHHHHhccc---CCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc
Confidence 0 0122223478999998875 7889998888999999998 9999999999999999999997321
Q ss_pred ccCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
. .... .++. |++ +++|.++| +. ..|++++ ++++.+.+.......+...+|+.+..+...|+.+.. .
T Consensus 181 ~-~~pl---~~ga--Divv~S~tK~l~G~~d~-~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~--R 251 (386)
T PRK08045 181 L-QNPL---ALGA--DLVLHSCTKYLNGHSDV-VAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP--R 251 (386)
T ss_pred c-CCch---hhCC--CEEEeecceeccCCCCc-eeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHH--H
Confidence 1 1111 1233 554 78899984 44 6788776 577766664333333445788888887777765432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec---
Q 012138 347 AERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK--- 410 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~--- 410 (470)
+++..+++..+.+.|++... .||... ....+.|.++.++++.+. ....+|++.|.--.+.++
T Consensus 252 ~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s~G~ 329 (386)
T PRK08045 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE--QTLRRFLGGLSLFTLAESLGG 329 (386)
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcH--HHHHHHHHhccceeEeccCCC
Confidence 34455555555555554211 122110 012366889999886421 234566666642211111
Q ss_pred -------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.|||++.+ |+.+++++-|.++|+
T Consensus 330 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 381 (386)
T PRK08045 330 VESLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFR 381 (386)
T ss_pred CceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHH
Confidence 11 15789999655 556667777776666
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=173.13 Aligned_cols=294 Identities=14% Similarity=0.121 Sum_probs=184.4
Q ss_pred CCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 111 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
+..+.++....|++.|+++.|.+.+++++||++|+..++..+.. +|+ .|++..++|.+............
T Consensus 47 Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~---------~Gd-~Il~~~~~y~~~~~~~~~~~~~~ 116 (388)
T PRK08861 47 YTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLG---------PDD-LIVAPHDCYGGTYRLFNTRANKG 116 (388)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcC---------CCC-EEEEcCCchHHHHHHHHHHHhcC
Confidence 33456778899999999999999999999999999999987654 455 77777888754321110110000
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g 269 (470)
.. .+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|+++|+++|+||+|. +
T Consensus 117 gi---------~v~~vd~~d~e~l~~~i~~---~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 117 DF---------KVQFVDQSDAAALDAALAK---KPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred Ce---------EEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 01 1233444588999988875 7899998887999999998 9999999999999999999997 2
Q ss_pred CcccCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
+.. .. .....|++ +++|.++| +. ..|++++ ++++.+.++..........+|..+..+...|+.+.-
T Consensus 181 ~~~--~p-----l~~GaDivv~S~tK~l~G~~d~-~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~l- 251 (388)
T PRK08861 181 VLQ--KP-----LELGADFVIHSTTKYINGHSDV-IGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGA- 251 (388)
T ss_pred ccC--CC-----cccCCCEEEeecceeccCCCcc-eeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHH-
Confidence 211 11 12234655 67799985 33 5677776 456666554322222334677777766655554322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCcee
Q 012138 345 KLAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA 409 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~ 409 (470)
..++..+++..+.+.|++... .||... ....+.|.++.+++..+. ....+|++.|.- .++..
T Consensus 252 -R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~--~~~~~f~~~l~l~~~~~s~ 328 (388)
T PRK08861 252 -RMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSF--EQLKVFVKALALFSLAESL 328 (388)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCH--HHHHHHHhcCCcceEccCC
Confidence 233444444555555554211 222110 112466889999886321 244556655532 12111
Q ss_pred c--------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 410 K--------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 410 ~--------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
. |. .++.|||++.+ |+++.+++-|+++|+ .+.+
T Consensus 329 G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~Dl~~al~-~~~~ 386 (388)
T PRK08861 329 GGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGL----EDAQDLIADLDQAFA-KAAE 386 (388)
T ss_pred CCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHH-HHHh
Confidence 1 11 15689999554 567777777777777 5543
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=172.19 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=184.2
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+|+++|+++.|.+..++++||++|+..++..+.. +|+ .|++..+.|++.............
T Consensus 56 R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all~---------pGD-~Vvv~~p~Y~~t~~~~~~~~~~~g- 124 (405)
T PRK08776 56 RSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQ---------PGD-TLVVPHDAYGGSWRLFNALAKKGH- 124 (405)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHhC---------CCC-EEEEccCCchHHHHHHHHHHHhcC-
Confidence 355667789999999998887788889999999988887754 566 677788888653211111000000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
..+..++..|+++|++++++ ++++|+++.++||+|.+.+ +++|.++|++||+++|+||+|.....
T Consensus 125 --------~~v~~v~~~d~~~l~~~i~~---~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~ 189 (405)
T PRK08776 125 --------FALITADLTDPRSLADALAQ---SPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPAL 189 (405)
T ss_pred --------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 11344555589999998865 7888887777999999987 99999999999999999999973211
Q ss_pred cCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
. .. .+ ++ .|++ +.+|.++| +. ..|+++. ++++.+.+........+..+++.+.++...++.++. ..
T Consensus 190 ~-~p--l~-~g--aDivv~S~tK~l~g~~~~-~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl~~--r~ 260 (405)
T PRK08776 190 Q-KP--LE-FG--ADLVLHSTTKYINGHSDV-VGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDA--RL 260 (405)
T ss_pred C-Cc--cc-cc--CCEEEecCceeecCCCCc-eEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcHHH--HH
Confidence 1 11 11 23 3555 66799974 44 5777765 577777664332333345788888888777766533 55
Q ss_pred HHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHc--Ccee---
Q 012138 348 ERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GILA--- 409 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~~--- 409 (470)
++..++...+.+.|++... .||... ....+.|.++.+++.... ....+|++.|.-- +...
T Consensus 261 ~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~l~~~~~s~G~~ 338 (405)
T PRK08776 261 RVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGE--AAVRAFVDGLRYFTLAESLGGV 338 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCH--HHHHHHHHhCCcceEccCCCCC
Confidence 5666666666666665321 122110 012466889999886321 2345666655421 2111
Q ss_pred -----ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 -----KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 -----~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+.+.+++-|+++|+
T Consensus 339 ~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~ 389 (405)
T PRK08776 339 ESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGI----ESAEDLLIDLRAGLA 389 (405)
T ss_pred ceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHH
Confidence 111 15689999655 456666666666665
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=172.97 Aligned_cols=289 Identities=13% Similarity=0.089 Sum_probs=182.0
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...++++.++++.|.+.+++++||++|+..++..+.. +|+ .|++..+.|++.......+ .....
T Consensus 49 r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~---------~GD-~Vlv~~~~y~~~~~~~~~~-~~~g~ 117 (385)
T PRK08574 49 REENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK---------AGD-RVVLPMEAYGTTLRLLKSL-EKFGV 117 (385)
T ss_pred CCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEcCCCchhHHHHHHHh-hccCc
Confidence 345778899999999999999999999999999999886654 566 6777788865432221111 10000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g 271 (470)
.+..+ ..|++++++++++. ++++|++|.++||+|.+++ +++|.++|++||+++|+|++|+ ++.
T Consensus 118 ---------~v~~~-~~d~~~l~~~i~~~--~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~~ 181 (385)
T PRK08574 118 ---------KVVLA-YPSTEDIIEAIKEG--RTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFATPLL 181 (385)
T ss_pred ---------EEEEE-CCCHHHHHHhcCcc--CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcccc
Confidence 01111 12788999888653 6889999999999999998 9999999999999999999996 332
Q ss_pred ccCCccccccCCCCcceeeccccccC-CCcc-eeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGG-GVIP-VSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~g-G~~~-ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
.. . . ..|.+.-+.+++|.++| |- . .|+++ .++++.+.++..........+|+.++.+...|+.+.. ..+
T Consensus 182 ~~--~--l-~~GaDivv~S~sK~l~g~~d-~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~~--R~~ 253 (385)
T PRK08574 182 YR--P--L-RHGADFVVHSLTKYIAGHND-VVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEV--RFE 253 (385)
T ss_pred CC--h--h-hhCCcEEEeeCceeecCCCC-ceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--HHH
Confidence 11 1 1 13332233478899985 43 3 35344 5677777665332223344677777777776665532 444
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCceEE---------E--eccceeEEEEeccCCCchhHHHHHHHHHHc--Cceec-
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYVKE---------V--RGRGLFNAVEFDKTALPVSAYDICLKMKER--GILAK- 410 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~~~---------~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~~~- 410 (470)
+..++..++.+.|+.... .||..... . .+.|.++.+++.... ....+|++.|.-- +....
T Consensus 254 ~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~--~~~~~~~~~l~l~~~~~s~G~ 331 (385)
T PRK08574 254 RQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGR--DAVLKFLRSLKLIKPSPSLGG 331 (385)
T ss_pred HHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCH--HHHHHHHHcCCcceEccCCCC
Confidence 555566666666654321 22211111 1 246889999885321 2455666655321 21111
Q ss_pred -------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.|||+..+ |+.+.+++-|.++++
T Consensus 332 ~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~ 383 (385)
T PRK08574 332 VESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL----EDVEDLIEDLDQALG 383 (385)
T ss_pred CcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 11 14689999554 567777877777776
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=169.75 Aligned_cols=282 Identities=17% Similarity=0.152 Sum_probs=182.0
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
..+.++...+|++.++++.+.+.++.++||++|+.+++. +.+ +|+ .||+..+.|++.. ..+......
T Consensus 49 ~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l~---------~GD-~VI~~~~~yg~~~-~~~~~~~~~- 115 (364)
T PRK07269 49 TRTKNPTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VFP---------VGS-KVVAVRDLYGGSF-RWFNQQEKE- 115 (364)
T ss_pred eCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-HhC---------CCC-EEEEecCCcCchH-HHHHHHHhc-
Confidence 345677889999999999999999999999999999885 333 566 6666777765432 221111000
Q ss_pred cccCCCCCCCCeeeec-CCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 192 AIRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~-~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
. + ..+. ..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+|+++...
T Consensus 116 ~---------~-~~~~~~~d~~~l~~~i~~---~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~~ 178 (364)
T PRK07269 116 G---------R-FHFTYANTEEELIAAIEE---DTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYSP 178 (364)
T ss_pred C---------c-EEEEecCCHHHHHHhcCc---CceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 0 0 1111 1279999999975 7899998888999999998 999999999999999999997521
Q ss_pred cccCCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
..+ ...+...|++ |++|.++| |=.-.|+++. ++++.+.++..........+|+.++.+...|+.+. ..
T Consensus 179 -~~~-----~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~--~r 250 (364)
T PRK07269 179 -IYQ-----RPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS--LR 250 (364)
T ss_pred -ccC-----CchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHH--HH
Confidence 011 1123344666 56698875 2102456665 56777766432212234578888888877776553 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHc----------CceeccC---
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKER----------GILAKPT--- 412 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----------Gv~~~~~--- 412 (470)
.++.+++...+.+.|++ +|...... ++.|.++.+.+... ....+|.+.+.-- ++++.|.
T Consensus 251 ~~~~~~na~~~a~~L~~----~p~v~~v~ypg~gg~~sf~~~~~---~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~ 323 (364)
T PRK07269 251 MERSTANAQEVVAFLKK----SPAVKEVLYTGKGGMISFKVADE---TRIPHILNSLKVFTFAESLGGVESLITYPTTQT 323 (364)
T ss_pred HHHHHHHHHHHHHHHHh----CCCccEEeCCCcCcEEEEEECCH---HHHHHHHHhCCcceEccCCCCcCeEeeCCcccc
Confidence 55556666666666654 33222222 57888999987531 2344555544311 2233231
Q ss_pred --------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 413 --------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 413 --------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++.|||++.+ |+++.+++-|.++|+
T Consensus 324 ~~~~~~~~r~~~Gi~~~liRlsvGl----E~~~dli~dl~~al~ 363 (364)
T PRK07269 324 HADIPAEVRHSYGLTDDLLRLSIGI----EDARDLIADLKQALE 363 (364)
T ss_pred cccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHhc
Confidence 15789999554 567778888877764
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=159.59 Aligned_cols=320 Identities=18% Similarity=0.220 Sum_probs=216.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.+|+|++++.+..-. +-+.. ......++.+.|...++.+ .++++.||+.|+|+++..+.. ||+++
T Consensus 16 v~~~V~~am~~~~~~--h~s~~-F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~---------pgdkV 83 (383)
T COG0075 16 VPPRVLLAMARPMVG--HRSPD-FVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE---------PGDKV 83 (383)
T ss_pred CCHHHHHHhcCCCCC--CCCHH-HHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC---------CCCeE
Confidence 568888887665422 21111 2344567777777777644 477889999999999997765 67866
Q ss_pred EEEEccCccccccchhcccCCccc--ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 169 IVSCCGCFHGRTLAAISMSCDNEA--IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 169 ii~~~~~yhg~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
+++..+.|-.+........+.+.. ...+ ...+ |+++++++|++. +++++|.+.+.-.+||...|
T Consensus 84 Lv~~nG~FG~R~~~ia~~~g~~v~~~~~~w------g~~v---~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnp---- 149 (383)
T COG0075 84 LVVVNGKFGERFAEIAERYGAEVVVLEVEW------GEAV---DPEEVEEALDKD-PDIKAVAVVHNETSTGVLNP---- 149 (383)
T ss_pred EEEeCChHHHHHHHHHHHhCCceEEEeCCC------CCCC---CHHHHHHHHhcC-CCccEEEEEeccCcccccCc----
Confidence 666777763332222222211111 0000 0122 899999999954 35666766665678999999
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCC-------
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------- 319 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~------- 319 (470)
+++|.++|++||+++|+|.|-+ + .|..+..+.|+++.-+..--|++++.- .+|.+..+++..+.+....
T Consensus 150 l~~I~~~~k~~g~l~iVDaVsS-~--Gg~~~~vd~wgiDv~itgSQK~l~~PP-Gla~v~~S~~a~e~~~~~~~~~~ylD 225 (383)
T COG0075 150 LKEIAKAAKEHGALLIVDAVSS-L--GGEPLKVDEWGIDVAITGSQKALGAPP-GLAFVAVSERALEAIEERKHPSFYLD 225 (383)
T ss_pred HHHHHHHHHHcCCEEEEEeccc-C--CCcccchhhcCccEEEecCchhccCCC-ccceeEECHHHHHHHhcCCCCceeec
Confidence 9999999999999999999977 3 344556777887432334449999654 6678888888777664321
Q ss_pred -----------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 320 -----------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 320 -----------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
..+.|+.+.....+..++|+.+.+ ++..++.+++++.+++++++++.+. +...-.....+..+.
T Consensus 226 L~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~--~~~~~~~s~tvta~~ 303 (383)
T COG0075 226 LKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLEL--FADPERRSPTVTAIK 303 (383)
T ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcc--ccCcccCCCceEEEE
Confidence 244556777788888899998876 4566777888888999998876542 221112233444554
Q ss_pred eccCCCchhHHHHHHHHHHc-CceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 386 FDKTALPVSAYDICLKMKER-GILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++... +..++...++++ |+.+.++. +..+||...-..+.+++..++.+|+.+|. ++..
T Consensus 304 ~P~g~---~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~-~~g~ 366 (383)
T COG0075 304 VPEGV---DDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALR-ELGV 366 (383)
T ss_pred CCCCC---CcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHH-HcCC
Confidence 44432 444444466666 99988663 67999988778999999999999999999 7654
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=172.23 Aligned_cols=289 Identities=17% Similarity=0.207 Sum_probs=184.0
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
...++...+|++.|+++.|.+.+++++||++|+..++..+.. +|+ .|++..+.|++... ...... +
T Consensus 54 r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~~---------~Gd-~Vl~~~~~Y~~t~~-~~~~~l-~-- 119 (425)
T PRK06084 54 RIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAE---------AGD-NIVSVAKLYGGTYN-LLAHTL-P-- 119 (425)
T ss_pred CCCCchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHhC---------CCC-EEEEeCCCcchHHH-HHHHhc-c--
Confidence 345677889999999999988899999999999999987765 455 67788888875332 221100 0
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
.....+..++.+|++++++++++ ++++|+++.++||+|.+.+ +++|.++|++||+++|+|++|+. +.
T Consensus 120 -----~~gi~v~~~d~~d~e~le~ai~~---~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a~-~~ 186 (425)
T PRK06084 120 -----RIGIETRFAAHDDIAALEALIDE---RTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVAT-PV 186 (425)
T ss_pred -----cceeEEEEECCCCHHHHHHHhcc---CCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-cc
Confidence 00011334555689999999976 7899999988999999998 99999999999999999999972 11
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcceeEEEec-HHHH--h---h---cCc-----------------------
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVM--L---C---IQP----------------------- 317 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~-~~~~--~---~---~~~----------------------- 317 (470)
.. .......|++ +++|.++| |. ++|.+++. +.+. + . +..
T Consensus 187 ~~-----~p~~~gaDivv~S~tK~l~G~g~-~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (425)
T PRK06084 187 LC-----RPFEHGADIVVHSLTKYIGGHGT-SIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRC 260 (425)
T ss_pred cC-----ChhhcCCCEEEECchhccccccc-ceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHH
Confidence 11 1112234655 78899985 55 67766653 2210 0 0 000
Q ss_pred ---CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEec-cce
Q 012138 318 ---GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRG-RGL 380 (470)
Q Consensus 318 ---~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~-~g~ 380 (470)
...+.....+|..++.+...|+.+. ...++..+++.++.+.|++... .||... ....+ .|.
T Consensus 261 ~~~~~~~~g~~l~~~~a~l~lrgl~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg 338 (425)
T PRK06084 261 RVVPLRNMGAALSPFNAFLILQGLETLA--LRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPAS 338 (425)
T ss_pred HHHHHHhcCCCCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcce
Confidence 0112233467777777766665543 3555666667777777776432 222111 11224 578
Q ss_pred eEEEEeccCCCchhHHHHHHHHHHcCc--ee--------ccC-----------------CCCEEEEecCCCCCHHHHHHH
Q 012138 381 FNAVEFDKTALPVSAYDICLKMKERGI--LA--------KPT-----------------HDTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv--~~--------~~~-----------------~~~~iR~~~~~~~t~e~i~~~ 433 (470)
++.+++..+. ....+|.+.|.--.+ .. .|. .++.|||++.+ |+.+.+
T Consensus 339 ~~s~~~~~~~--~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl----Ed~~dL 412 (425)
T PRK06084 339 ILSFGIKGGQ--AAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGI----EHIDDI 412 (425)
T ss_pred EEEEEecCCH--HHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHH
Confidence 8999886432 234566666542221 11 111 15789999554 667778
Q ss_pred HHHHHHHHh
Q 012138 434 SKALHDVLE 442 (470)
Q Consensus 434 ~~~l~~~l~ 442 (470)
++-|.++|+
T Consensus 413 i~dl~~Al~ 421 (425)
T PRK06084 413 IADLAQALD 421 (425)
T ss_pred HHHHHHHHH
Confidence 888887776
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-18 Score=168.77 Aligned_cols=289 Identities=17% Similarity=0.225 Sum_probs=184.5
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...++++.++++.|.+..+.++||+.|+..++..+.. +|+ .||+..+.| +.+.........
T Consensus 61 r~~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll~---------~Gd-~Viv~~~~y-~~t~~~~~~~~~--- 126 (403)
T PRK07503 61 RISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLLR---------PGD-EVIVDQTLY-GCTFAFLHHGLG--- 126 (403)
T ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHcC---------CCC-EEEEccCcc-chHHHHHHHHHh---
Confidence 355677899999999999988889999999999999886543 566 666666665 433222110000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
.....+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|++||+++|+|++|+.. .
T Consensus 127 -----~~G~~v~~vd~~d~~~l~~~i~~---~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~~-~ 193 (403)
T PRK07503 127 -----EFGVTVRHVDLTDPAALKAAISD---KTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCTP-Y 193 (403)
T ss_pred -----hCCEEEEEeCCCCHHHHHHhcCc---cCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence 00011345555689999998875 7899998888999999998 999999999999999999999732 1
Q ss_pred cCCccccccCCCCccee--eccccccC-C-CcceeEEEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G-~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.+... +...|++ +++|.++| | . +.|+++.++++++.++.. ........+++.++.+...|+.+.. .
T Consensus 194 ~~~~l-----~~g~Di~v~S~tK~l~g~gd~-~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~~--r 265 (403)
T PRK07503 194 LQRPL-----ELGADLVVHSATKYLGGHGDI-TAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLAL--R 265 (403)
T ss_pred cCCch-----hhCCCEEEccccccccCCCce-eEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHHH--H
Confidence 22221 2233554 78899995 4 5 788899889888877532 2222355788888888777765532 3
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCceec-
Q 012138 347 AERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILAK- 410 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~~- 410 (470)
.++..++...+.+.|++... .||... ....+.|.++.+++.... .....+.+.|.- .+....
T Consensus 266 ~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~--~~~~~~~~~l~l~~~~~slG~ 343 (403)
T PRK07503 266 MDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGI--AAGRRFMNALQLFARAVSLGD 343 (403)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCH--HHHHHHHHhCCcceeecccCC
Confidence 34444556666666655321 122110 011245778888775321 233445544331 221110
Q ss_pred -------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.|||++.+ |+++++++-|.++|+
T Consensus 344 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~Al~ 395 (403)
T PRK07503 344 AESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGL----EDVADILADLAQALD 395 (403)
T ss_pred CCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEec----CCHHHHHHHHHHHHH
Confidence 10 14689999655 556667777766666
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=169.12 Aligned_cols=294 Identities=15% Similarity=0.092 Sum_probs=178.4
Q ss_pred CCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 111 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
+..+.++...+|++.++++.|.+.+++++||++|+..++..+.+ +|+ .||+..+.|.+............
T Consensus 59 Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~---------~GD-~Vl~~~~~y~~~~~~~~~~~~~~ 128 (394)
T PRK07050 59 YGLHATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVK---------AGD-DVLIPDNAYGPNRDHGEWLARDF 128 (394)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhC---------CCC-EEEEecCCcccHHHHHHHHHHhc
Confidence 33456677899999999999999999999999999999987754 566 78888888754331110000000
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
. ..+..++..+.+++++++++ ++++|++|.++||+|.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 129 G---------i~v~~vd~~~~~~l~~~i~~---~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~livD~a~a~- 191 (394)
T PRK07050 129 G---------ITVRFYDPLIGAGIADLIQP---NTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTAIDNTYSA- 191 (394)
T ss_pred C---------eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEEEECCccc-
Confidence 0 11233433356788888865 7899998888999998776 99999999999999999999972
Q ss_pred cccCCccccccCCCCccee--eccccccCCC-cceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
|..+.....|. |++ +++|.++||. .+.|+++. ++++++.++........+.++..+..+...++.+. ..
T Consensus 192 ---~~~~~~l~~Ga--Di~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~--~R 264 (394)
T PRK07050 192 ---GLAFKPFEHGV--DISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQ--VR 264 (394)
T ss_pred ---ccccCHHHcCC--eEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHH--HH
Confidence 11111111233 554 7889998542 15787775 67777776543322233456665554443333221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec---
Q 012138 347 AERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK--- 410 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~--- 410 (470)
.++..+++.++.+.|++... .||... ....+.|.++.+.+..........+|.+.|...++.++
T Consensus 265 l~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~ 344 (394)
T PRK07050 265 LAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGG 344 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCC
Confidence 33333444455555544211 112100 01124577788877542112356778887776554332
Q ss_pred ------cC------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 ------PT------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 ------~~------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.|||++.+ |+.+.+++-|.++|+
T Consensus 345 ~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl----E~~~dl~~dl~~al~ 390 (394)
T PRK07050 345 ACSLAMPYDVASMRTAKWPHRGTLVRLYIGL----EDEADLIADLEQALE 390 (394)
T ss_pred ccceEeeCcccccchhhcCCCCCEEEEEeCc----CCHHHHHHHHHHHHH
Confidence 21 13679999665 445555555555554
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-18 Score=168.32 Aligned_cols=289 Identities=17% Similarity=0.198 Sum_probs=182.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...+|++.++++.+.+..+.++||++|+..++..+.. +|+ .|++..+.|.+...........
T Consensus 58 ~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~---------~Gd-~Vl~~~~~y~~t~~~~~~~~~~---- 123 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLR---------PGD-HIVIPNDAYGGTFRLIDKVFTR---- 123 (388)
T ss_pred CCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhC---------CCC-EEEEcCCCchHHHHHHHHhCcC----
Confidence 45667899999999999988888889999999999987754 566 6777888875432211111100
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
....+..++..|+++|++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++|+.. ..
T Consensus 124 -----~gi~~~~~d~~d~e~l~~~i~~---~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~~-~~ 190 (388)
T PRK07811 124 -----WGVEYTPVDLSDLDAVRAAITP---RTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFASP-YL 190 (388)
T ss_pred -----CCeEEEEeCCCCHHHHHHhcCc---CCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCcc-cc
Confidence 0011234444589999998876 7899998888999999988 999999999999999999999732 11
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
+... ....|++ +++|.++| |-...|++++ ++++.+.+...........++..++.+...|+.+ +...++
T Consensus 191 ~~p~-----~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~ 263 (388)
T PRK07811 191 QQPL-----ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDR 263 (388)
T ss_pred CCch-----hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHH
Confidence 1111 1223554 77899985 3215788776 4666665543322223345666666665555543 234455
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCcee-----
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA----- 409 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~----- 409 (470)
..++...+.+.|++... .||... ....+.|.++.++++... ..+.+|.+.|.- .+...
T Consensus 264 ~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s~G~~~s 341 (388)
T PRK07811 264 HSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGE--EAARDFCARTKVFTLAESLGGVES 341 (388)
T ss_pred HHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCH--HHHHHHHHhCCcceeeccCCCCcc
Confidence 56667777777765321 222110 012356889999886321 245566665542 12111
Q ss_pred ---ccC--------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 ---KPT--------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 ---~~~--------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+.+.+++.|.++|+
T Consensus 342 l~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 387 (388)
T PRK07811 342 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGI----EDVADLLADLEQALG 387 (388)
T ss_pred eEeCCcccCcccCCHhhcCCCCCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence 111 14689999655 566777777777765
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=169.38 Aligned_cols=321 Identities=16% Similarity=0.158 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHHHH-c--cccCCCCC--CCcHHHHH----HHHhhhhCCC--eEEec---CChhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQAEK-L--TLSSRAFY--NDKFPVFA----ERLTSMFGYD--MVLPM---NTGAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~--~~~~~~~~--~~~~~~l~----~~l~~~~~~~--~v~~~---~sGteA~~~al~~~~~~~~ 157 (470)
..|.+++++...+.+ + +..+..++ ......++ +.++++++.+ .+.++ +||++||.+++..+.+
T Consensus 46 ~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~--- 122 (452)
T PTZ00094 46 TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQ--- 122 (452)
T ss_pred CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcC---
Confidence 358899988887754 3 11111111 22233333 4677777743 45455 7899999998887743
Q ss_pred hcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEcc
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
+|+ .|++.... ||............. .......-.+..++++ |+++|++++++. +++.|++.
T Consensus 123 ------~gd-~Ii~~~~e-hg~~l~~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~- 189 (452)
T PTZ00094 123 ------PHD-RIMGLDLP-SGGHLTHGFYTAKKK--VSATSIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAG- 189 (452)
T ss_pred ------CCC-EEEecccc-cCCcccccccccccc--cccceeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEe-
Confidence 455 66664444 655443211000000 0000000001112222 899999999754 44556652
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADK 309 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~ 309 (470)
++.+|...| +++|.++|+++|+++++|++|+ |....+ .+..... ..|++++| |++.|.. .|++++++
T Consensus 190 -~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~~G~i~~~-~~~~~~~--~~D~l~~S~hK~l~GP~--Gg~l~~~~ 259 (452)
T PTZ00094 190 -ASAYPRDID----YKRFREICDSVGAYLMADIAHTSGLVAAG-VLPSPFP--YADVVTTTTHKSLRGPR--SGLIFYRK 259 (452)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEeccchhccccCC-CCCCCCC--CCcEEEcCCccCCCCCC--ceEEEEec
Confidence 446889998 9999999999999999999998 432111 1111111 35777555 9887653 36677766
Q ss_pred HHHhhcCcC---CccCCC--CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 310 EVMLCIQPG---EHGSTF--GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 310 ~~~~~~~~~---~~~~t~--~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
++.+.+... .....| +.++..+++..++++.+.. +.+.+++.++.++|.+.|.+.+.. .... ......
T Consensus 260 ~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~---v~~~-~~~~~~ 335 (452)
T PTZ00094 260 KVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYD---LVTG-GTDNHL 335 (452)
T ss_pred ccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcE---EecC-CCCCce
Confidence 544322111 011111 3567788888888988854 457788888999999888763211 1110 111223
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceec----cC-----CCCEEEEecCCCCC----HHHHHHHHHHHHHHHhccc
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAK----PT-----HDTIVRLTPPLSIS----SNELQEGSKALHDVLELDL 445 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~-----~~~~iR~~~~~~~t----~e~i~~~~~~l~~~l~~~~ 445 (470)
..+.+... +.+...+...|.++||.+. |+ .++.+|++++..++ ++|++++++.|.+++. ..
T Consensus 336 ~~v~~~~~--~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~-~~ 409 (452)
T PTZ00094 336 VLVDLRPF--GITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK-LA 409 (452)
T ss_pred EeecCCcC--CCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH-HH
Confidence 33333322 2366788888888899985 22 24789999976665 9999999999999998 53
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=168.49 Aligned_cols=278 Identities=17% Similarity=0.097 Sum_probs=179.3
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~ 190 (470)
+.++...+|++.++++.|.+..++++||+.|+..++..... +|+ .||+..+.|++..... ....+
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~---------~Gd-~Vl~~~~~y~~t~~~~~~~~~~~G-- 127 (389)
T PRK05968 60 GDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVE---------PGD-RIVAVRHVYPDAFRLFETILKRMG-- 127 (389)
T ss_pred CCChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHHHcC--
Confidence 44566889999999999988888889999999988876544 566 6777777875532111 11111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+..++.+|++++++++ + ++++|++|.+.|+.+.+.+ +++|.++|++||+++|+|++|+..
T Consensus 128 ----------~~v~~vd~~d~~~l~~~i-~---~tklV~ie~pt~~~~~~~d----l~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 128 ----------VEVDYVDGRDEEAVAKAL-P---GAKLLYLESPTSWVFELQD----VAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred ----------ceEEEeCCCCHHHHHHhc-c---cCCEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCcch
Confidence 112344555899999887 3 6788888866666666655 999999999999999999999732
Q ss_pred cccCCccccccCCCCccee--eccccccC-C-CcceeEEEecHHHHhhcCcCCc-cCCCCCCHHHHHHHHHHHHHHhhhh
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLADKEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRDEK 345 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G-~~~ig~v~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~~~ 345 (470)
.. .... ..+. |++ +++|.++| | . ..|++++++++++.++.... ......++..++.+...|+.+ ..
T Consensus 190 ~~-~~p~---~~g~--Divv~S~tK~l~g~~~~-~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~ 260 (389)
T PRK05968 190 VF-QRPI---TLGV--DLVIHSASKYLGGHSDT-VAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PL 260 (389)
T ss_pred hc-cCch---hcCC--cEEEeeccccccCCCCe-EEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HH
Confidence 11 1111 1233 554 77899985 3 4 67888889888877653211 112346777777776666655 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-------------ccceeEEEEeccCCCchhHHHHHHHHHHcCceec--
Q 012138 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVR-------------GRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-- 410 (470)
Q Consensus 346 ~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-- 410 (470)
..++..++..++.+.|++. | .+..+. +.|.++.++++.. ....+|++.|...++.++
T Consensus 261 r~~~~~~~a~~la~~L~~~----p-~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~---~~~~~f~~~L~~~~~~~s~G 332 (389)
T PRK05968 261 RMKAHEASALEIARRLKAH----P-VVERVCHPALANHPPAGLSGTSGLFSFIFREG---IDVRAFADALKLFRLGVSWG 332 (389)
T ss_pred HHHHHHHHHHHHHHHHHhC----C-CccEEECCCCCCChHHhCCCCceEEEEEECCH---HHHHHHHHhCCccEEecCCC
Confidence 4444455566677777653 2 222221 4467888887632 367788888876553322
Q ss_pred -------cC------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -------PT------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -------~~------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.+|+++.+.. .+++++-|+++|+
T Consensus 333 ~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~----~~dl~~dl~~al~ 385 (389)
T PRK05968 333 GHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEG----TEALWADLEQALA 385 (389)
T ss_pred CCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCC----HHHHHHHHHHHHH
Confidence 21 1468999976644 4555555555554
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-17 Score=167.34 Aligned_cols=278 Identities=19% Similarity=0.216 Sum_probs=170.6
Q ss_pred HHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc----cCCccccc
Q 012138 121 VFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM----SCDNEAIR 194 (470)
Q Consensus 121 ~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~----~~~~~~~~ 194 (470)
++.+++++++|. +++++++||++++++++...... +++ .|++.++. |......+.. .+....
T Consensus 116 e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~--------~g~-~Vlv~~~~-~~~~~~~~~~~~~~~G~~~~-- 183 (447)
T PRK00451 116 EYQTMICELTGMDVANASMYDGATALAEAALMAVRIT--------KRK-KVLVSGAV-HPEYREVLKTYLKGQGIEVV-- 183 (447)
T ss_pred HHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhc--------CCC-EEEEeCcc-CHHHHHHHHHHHHhCCcEEE--
Confidence 344667888875 46889999999988877655321 344 67766665 4443333221 111111
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE--eccccCCcc
Q 012138 195 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA--DEIQSGLAR 272 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~--Dev~~g~g~ 272 (470)
..+..++ .+ |+++|++++++ ++++|+++.. |++|.+.| +++|.++|+++|+++|+ |.+..|+
T Consensus 184 -~v~~~~~--~~---d~~~l~~~i~~---~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~-- 247 (447)
T PRK00451 184 -EVPYEDG--VT---DLEALEAAVDD---DTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL-- 247 (447)
T ss_pred -EecCCCC--CC---CHHHHHHhcCC---CeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--
Confidence 1111111 22 89999998875 7888887775 88999998 99999999999999998 5443221
Q ss_pred cCCccccccCCCCcceee-----cccccc-CCCcceeEEEecHHHHhhcCcC---------------------------C
Q 012138 273 SGRMLASDWEEVRPDMVI-----LGKALG-GGVIPVSAVLADKEVMLCIQPG---------------------------E 319 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~s-----~sK~l~-gG~~~ig~v~~~~~~~~~~~~~---------------------------~ 319 (470)
......+ ..|+++ |||.+. +|. ++|++++++++++.+.+. .
T Consensus 248 ---~~~~~~~--~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
T PRK00451 248 ---LKPPGEY--GADIVVGEGQPLGIPLSFGGP-YLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRRE 321 (447)
T ss_pred ---CCCcccC--CCCEEEECCCcCCCCCCCCCC-CchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccc
Confidence 1111222 336653 455544 677 899999999888874211 0
Q ss_pred cc-CCCCCCH-HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchh
Q 012138 320 HG-STFGGNP-LASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 394 (470)
Q Consensus 320 ~~-~t~~~~~-~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 394 (470)
++ .+++.+. +...++..+++.+.+ +++.++..++++++.+.|+++. .+... ..+.+..+.+..+. +
T Consensus 322 ~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~-----g~~~~-~~~~~~~~~v~~~~---~ 392 (447)
T PRK00451 322 KATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIG-----GVELF-DGPFFNEFVVRLPK---P 392 (447)
T ss_pred cccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcC-----CEEec-CCCeEEEEEEecCC---C
Confidence 11 1111221 222233334444433 4566777778888888887642 23222 22222222222222 4
Q ss_pred HHHHHHHHHHcCceec-------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 395 AYDICLKMKERGILAK-------PTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 395 ~~~~~~~l~~~Gv~~~-------~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+++++|.++|+.+. +...+++|++++..+|+++++++++.|++++
T Consensus 393 ~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 393 AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6789999999988742 1124689999988899999999999998875
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=172.62 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=121.8
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCC
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCD 189 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~ 189 (470)
.+.++...+|+++++++.|.+.+++++||++|+..++..+.. +|+ .||+..+.|++..... ....+
T Consensus 53 r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~---------~Gd-~Vl~~~~~y~~t~~~~~~~~~~~G- 121 (418)
T TIGR01326 53 RLMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLAQ---------AGD-NIVSSSYLYGGTYNLFKHTLKRLG- 121 (418)
T ss_pred CCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC---------CCC-EEEEECCCcHHHHHHHHHHHHHcC-
Confidence 356677899999999999999999999999999999987754 455 6777788876532211 11111
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..++.+|++++++++++ ++++|++|.++||+|.+.| +++|.++|++||+++|+||+|+.
T Consensus 122 -----------~~v~~v~~~d~~~l~~~l~~---~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~~ 183 (418)
T TIGR01326 122 -----------IEVRFVDPDDPEEFEKAIDE---NTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFAT 183 (418)
T ss_pred -----------cEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCch
Confidence 11345556689999999875 7889999998999999998 99999999999999999999862
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcceeEEEecH
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK 309 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~ 309 (470)
. .. .......+|++ |++|.++| |. ++|++++++
T Consensus 184 ~-~~-----~~~l~~g~Divv~S~sK~l~g~G~-~lGg~v~~~ 219 (418)
T TIGR01326 184 P-YL-----CRPIDHGADIVVHSATKYIGGHGT-AIGGVIVDG 219 (418)
T ss_pred h-hc-----CCchhcCCeEEEECccccccCCcc-ceEEEEEec
Confidence 1 11 11122235765 88899996 87 999988754
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-17 Score=162.60 Aligned_cols=314 Identities=14% Similarity=0.165 Sum_probs=190.0
Q ss_pred HHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCc
Q 012138 97 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 176 (470)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~y 176 (470)
.+++.+.+...... ..+...++++.++++++.+++++++||++|+..++.++.....+..+..+|+ .||+..++|
T Consensus 47 ~~a~~~~~~~~~~~----~G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd-~VIv~~~t~ 121 (438)
T PRK15407 47 LQNLVDASLDFWLT----TGRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGD-EVITVAAGF 121 (438)
T ss_pred HHHHHHHHHhCccc----CChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCC-EEEECCCCc
Confidence 44455555443322 2344688999999999999999999999999999987642111111233565 788888887
Q ss_pred cccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 177 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 177 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
.+........+..+.+ .+..+....+ |++++++++++ ++++|++.++ .|...+ +++|.++|++
T Consensus 122 ~a~~~~v~~~G~~pv~----vdvd~~~~~i---d~~~le~~i~~---~tkaVi~~~~---~G~p~d----l~~I~~la~~ 184 (438)
T PRK15407 122 PTTVNPIIQNGLVPVF----VDVELPTYNI---DASLLEAAVSP---KTKAIMIAHT---LGNPFD----LAAVKAFCDK 184 (438)
T ss_pred HHHHHHHHHcCCEEEE----EecCCCcCCc---CHHHHHHHcCc---CCeEEEEeCC---CCChhh----HHHHHHHHHH
Confidence 5544333322221111 1111111122 89999998875 7888887663 455555 9999999999
Q ss_pred cCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcC------------
Q 012138 257 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG------------ 318 (470)
Q Consensus 257 ~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~------------ 318 (470)
||++||+|++|+ |--..|+.. ..+| |+.+|| |.+..| ..|+++.+ +++.+.++..
T Consensus 185 ~gi~vIeDaa~a~G~~~~g~~~--G~~g---d~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~ 257 (438)
T PRK15407 185 HNLWLIEDNCDALGSTYDGRMT--GTFG---DIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAPG 257 (438)
T ss_pred CCCEEEEECccchhhhcCCeee--eccC---ceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCcccccccc
Confidence 999999999998 322333321 1122 666555 556655 33666654 4444322110
Q ss_pred ---------------------------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--hCC
Q 012138 319 ---------------------------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ--QFP 369 (470)
Q Consensus 319 ---------------------------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~p 369 (470)
..+..+..+.+.++.+...|+.++ .+.++.+++.+++.+.|..+.. ..|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~--~~~~~R~~~a~~y~~~L~~~~~~~~~~ 335 (438)
T PRK15407 258 CDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLP--GFIEARKANFAYLKEGLASLEDFLILP 335 (438)
T ss_pred cccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCccccC
Confidence 123445578889999988888774 4667778888888888865421 111
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-----C-----------------------CCEEEEec
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-----H-----------------------DTIVRLTP 421 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~-----------------------~~~iR~~~ 421 (470)
.........-.++.+.++... +.+..++.+.|.++||.+... + ...+-+-.
T Consensus 336 ~~~~~~~~~~~~~~i~~~~~~-~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~ 414 (438)
T PRK15407 336 EATPNSDPSWFGFPITVKEDA-GFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGV 414 (438)
T ss_pred cCCCCCeeEEEEEEEEECCcC-CCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecC
Confidence 000011111123334343211 235789999999999965411 0 12233333
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 012138 422 PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~ 442 (470)
....|++++++.++.|+++++
T Consensus 415 ~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 415 YPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 345789999999999999875
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=159.24 Aligned_cols=298 Identities=17% Similarity=0.198 Sum_probs=179.6
Q ss_pred HHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhcccC-CCC--------------------CcEEEEEccCcccccc
Q 012138 124 ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKF-SID--------------------EAIIVSCCGCFHGRTL 181 (470)
Q Consensus 124 ~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~~-~~g--------------------~~~ii~~~~~yhg~~~ 181 (470)
++..++++.+.+ +=..||+.||.+++.++.+....++-. .+| .+.|+..+.. ||..+
T Consensus 102 ~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~-~GGHl 180 (493)
T PRK13580 102 EHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLD-SGGHL 180 (493)
T ss_pred HHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCC-CCCee
Confidence 445566787764 334689999999998776510000000 012 3477777665 44332
Q ss_pred chh---cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 182 AAI---SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 182 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
..- ..++. .+.....++.+....+ |++++++.+++ .++.|++....+- |...| +++|+++|++||
T Consensus 181 thg~~~n~~~~-~~~~~~y~vd~~~g~i---D~d~l~~~~~~---~~plvii~g~S~~-~~~~d----l~~i~eia~~~g 248 (493)
T PRK13580 181 THGFRPNISGK-MFHQRSYGVDPDTGLL---DYDEIAALARE---FKPLILVAGYSAY-PRRVN----FAKLREIADEVG 248 (493)
T ss_pred ecCcccchhhh-eeeeEecccCcccCcc---CHHHHHHHHhh---cCCEEEEeCcccc-CCCcC----HHHHHHHHHHcC
Confidence 211 01110 0100001111111223 89999999987 4555665564555 44667 999999999999
Q ss_pred cEEEEecccc-CCcccCCcccc--ccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCCC-CCHHHHH
Q 012138 259 ILMIADEIQS-GLARSGRMLAS--DWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG-GNPLASA 332 (470)
Q Consensus 259 illI~Dev~~-g~g~~G~~~~~--~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~-~~~~~~a 332 (470)
++|++|++|+ |+-. |..+.. ... ...|++ |++|++.|. +.|++++++++.+.+... ....|+ ..+..++
T Consensus 249 A~L~VD~AH~~Glig-g~~~~~~~~~~-~~~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iA 323 (493)
T PRK13580 249 AVLMVDMAHFAGLVA-GKVFTGDEDPV-PHADIVTTTTHKTLRGP--RGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMA 323 (493)
T ss_pred CEEEEECchhhceec-cccchhhcCCC-CCCcEEEeCChhhccCC--CeEEEEecHHHHHHHhhC-CCcccCCCccHHHH
Confidence 9999999998 5321 222210 111 134655 777999654 457788999988887422 233343 2233444
Q ss_pred HHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCcee
Q 012138 333 VAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 409 (470)
Q Consensus 333 aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 409 (470)
++..++..+.+ ..+++++.++.++|++.|.+.+.. .+.. .....++.+.+.... .....+.+.|.+.||++
T Consensus 324 A~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~---vv~g-gTdshIV~V~lg~~~--~~g~~a~~~L~e~GI~v 397 (493)
T PRK13580 324 AKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGAR---LVTG-GTDNHLVLIDVTSFG--LTGRQAESALLDAGIVT 397 (493)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCC---ccCC-CCCCCEEEEEeCCHH--HHHHHHHHHHHHCCeEE
Confidence 44445555543 347889999999999999886432 1110 134566677664432 23346777999999998
Q ss_pred cc----C---C---CCEEEEecCC----CCCHHHHHHHHHHHHHHHhcccC
Q 012138 410 KP----T---H---DTIVRLTPPL----SISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 410 ~~----~---~---~~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+ . + ...|||+++. .++++|++++++.|.++++ ...
T Consensus 398 n~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~-~~~ 447 (493)
T PRK13580 398 NRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS-NTT 447 (493)
T ss_pred ccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH-hhh
Confidence 62 2 2 5679999887 5579999999999999998 653
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-18 Score=167.41 Aligned_cols=291 Identities=12% Similarity=0.081 Sum_probs=176.2
Q ss_pred CCCCHHHHHHHHHHHHHccccCCCCC-------CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 90 GHCHPKIMKALQEQAEKLTLSSRAFY-------NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 90 G~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
+..++.+.+++.+.+......+.... .+..++++++++++++. +.+++++|++++++.+++.+.....
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~--- 84 (353)
T TIGR03235 8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGE--- 84 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc---
Confidence 34679999999988865322222111 13356788889998875 4799999999999999887654210
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
.++++.|++.... |.+................+.+...+ .. .|+++|++++++ ++++|+++.++|++|.+
T Consensus 85 --~~g~~~vi~~~~~-~~s~~~~~~~~~~~G~~v~~v~~~~~-~~---~d~~~l~~~l~~---~~~lv~~~~~~n~tG~~ 154 (353)
T TIGR03235 85 --QKGKKHIITSAIE-HPAVLEPIRALERNGFTVTYLPVDES-GR---IDVDELADAIRP---DTLLVSIMHVNNETGSI 154 (353)
T ss_pred --cCCCCeeeEcccc-cHHHHHHHHHHHhcCCEEEEEccCCC-Cc---CCHHHHHHhCCC---CCEEEEEEcccCCceec
Confidence 1343466665544 33322221110000111100111000 11 278999998865 68888888889999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhh--cC
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLC--IQ 316 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~--~~ 316 (470)
.| +++|.++|++||+++|+|++|+ +|.. .+..+.+ .+|+++++ |.++ .. .+|+++.+++..+. +.
T Consensus 155 ~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~--~~~~~~~--~~D~~~~s~~K~~g-p~-g~g~l~~~~~~~~~~~~~ 223 (353)
T TIGR03235 155 QP----IREIAEVLEAHEAFFHVDAAQV-VGKI--TVDLSAD--RIDLISCSGHKIYG-PK-GIGALVIRKRGKPKAPLK 223 (353)
T ss_pred cC----HHHHHHHHHHcCCEEEEEchhh-cCCc--ccccccc--CCCEEEeehhhcCC-CC-ceEEEEEccCcccccccC
Confidence 98 9999999999999999999998 2211 1122223 35777666 9754 22 57888888775322 22
Q ss_pred cCCc-------cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEe
Q 012138 317 PGEH-------GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEF 386 (470)
Q Consensus 317 ~~~~-------~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~ 386 (470)
+... ....+.++...++..++++.+.+ +.+.++.+++.+++++.|++.+-+ .+... .....+..+.+
T Consensus 224 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~---~~~~~~~~~~~i~~~~~ 300 (353)
T TIGR03235 224 PIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVK---LNGDPAETIPHILNFSI 300 (353)
T ss_pred ceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeE---EeCCcccccCCEEEEEe
Confidence 2111 11234566777777788887653 456778888888888887663211 11100 11233444443
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccC
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
+. .+..++.+.|.+ +|.+.++
T Consensus 301 ~~----~~~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 301 DG----VNSEALIVNLRA-DAAVSTG 321 (353)
T ss_pred CC----cCHHHHHHHHhC-CeEEEch
Confidence 32 356788888865 8888765
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=160.04 Aligned_cols=312 Identities=15% Similarity=0.189 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEE
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSC 172 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~ 172 (470)
++-.+++.+.++...+. ..+...++++.++++++.+++++++||++|+..+++.+ .. +|+ .|++.
T Consensus 10 ~~~~~~v~~~~~~~~~~----~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~---------~Gd-~Viv~ 75 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT----QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVG---------PGD-RVWTT 75 (380)
T ss_pred HHHHHHHHHHHhcCCcc----CChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCC---------CCC-EEEeC
Confidence 45577777777654322 23456889999999999888888899999999999876 22 455 78888
Q ss_pred ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 173 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
.++|..........+.... +.+..++...+ |++++++.+++.+ +++++|++ .+++|...+ +++|.
T Consensus 76 ~~~~~~~~~~~~~~G~~~~----~~~~~~~~~~~---d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~----~~~i~ 141 (380)
T TIGR03588 76 PITFVATANCALYCGAKVD----FVDIDPDTGNI---DEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD----MQAIA 141 (380)
T ss_pred CcchHHHHHHHHHcCCEEE----EEecCCCcCCc---CHHHHHHHhhcccCCCceEEEE---eCCCCccCC----HHHHH
Confidence 8887554322222222111 11111111122 8999999997321 26788774 346788887 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEE-ecHHHHhhcCcC-------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVL-ADKEVMLCIQPG------- 318 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~-~~~~~~~~~~~~------- 318 (470)
++|++||++||+|++|+ |....|..+... . .-|+.++| |.++.| ..|+++ .++++.+.++..
T Consensus 142 ~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~--~-~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~ 216 (380)
T TIGR03588 142 ALAKKHGLKIIEDASHALGAEYGGKPVGNC--R-YADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITK 216 (380)
T ss_pred HHHHHcCCEEEEECCCcccCccCCEeCCCc--c-ccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCC
Confidence 99999999999999998 322233222110 0 22666555 777644 344455 456666554321
Q ss_pred ------------------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE-EEeccc
Q 012138 319 ------------------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRG 379 (470)
Q Consensus 319 ------------------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~~~~~g 379 (470)
..+..+..+.+.++.+.+.|+.+ +.+.++.+++.+++.+.|..+....+.... ......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 294 (380)
T TIGR03588 217 DPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAW 294 (380)
T ss_pred CcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEE
Confidence 01222345667777777777655 456777888888888888765321100000 000111
Q ss_pred eeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------------------------CCEEEEecCCCCCHHHHHHHH
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------------------~~~iR~~~~~~~t~e~i~~~~ 434 (470)
.++.+.+... .+....++.+.|.++||.+.... .+.+++......|++|+++++
T Consensus 295 ~~~~i~~~~~-~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~ 373 (380)
T TIGR03588 295 HLYPILLDQE-FGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVV 373 (380)
T ss_pred EEEEEEECCc-CCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHH
Confidence 2333334321 12367899999999999764210 255777767778999999999
Q ss_pred HHHHHHH
Q 012138 435 KALHDVL 441 (470)
Q Consensus 435 ~~l~~~l 441 (470)
+.|++++
T Consensus 374 ~~l~~~~ 380 (380)
T TIGR03588 374 ETLRKVL 380 (380)
T ss_pred HHHHHhC
Confidence 9998874
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-17 Score=155.69 Aligned_cols=343 Identities=14% Similarity=0.160 Sum_probs=199.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-C----CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-Y----NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVET 147 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~ 147 (470)
.-|||..+. +..+|.|.+++.+.+..+...+... + .+..++.++.++++.+. ++|+||+++||++.+
T Consensus 44 ~vyld~~at------~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 44 PVYLDNQAT------GPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL 117 (428)
T ss_pred cEEEecCcC------CCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence 357776543 4478999999999887754443322 1 11245566778888864 359999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++-.-.. +.+ + .++.||..... |.+.........+......|.|+. +...+ |++.+++.|+. +|++
T Consensus 118 vl~~v~~~-~~~-~---~~k~iitl~~e-H~~v~~s~~~l~~~g~~Vt~lpv~-~~~~~---d~~~~~~~i~~---~T~l 184 (428)
T KOG1549|consen 118 VLKGVARF-FGD-K---TKKHIITLQTE-HPCVLDSCRALQEEGLEVTYLPVE-DSGLV---DISKLREAIRS---KTRL 184 (428)
T ss_pred HHHHhhcc-ccc-c---ccceEEEeccc-CcchhHHHHHHHhcCeEEEEeccC-ccccc---cHHHHHHhcCC---CceE
Confidence 99955331 111 1 23367776666 665554443333333433333432 21222 78999999987 8999
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAV 305 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v 305 (470)
|.|+.++|+.|++.| +++|.++|+++|+.+++|.+|+ .|+.- .+-..+.+|+++++ |.+++- ++|++
T Consensus 185 v~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa----vG~i~-vDV~eln~D~~s~s~HK~ygp~--~iGaL 253 (428)
T KOG1549|consen 185 VSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA----VGKIP-VDVQELNADFLSISAHKIYGPP--GIGAL 253 (428)
T ss_pred EEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh----cCCcc-ccHHHcCchheeeecccccCCC--cceEE
Confidence 999999999999999 9999999999999999999998 33321 34445566887666 877753 48999
Q ss_pred EecHHHHhhcC--cCCccC-----CC--CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH-HHhhCCCceE
Q 012138 306 LADKEVMLCIQ--PGEHGS-----TF--GGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFK-IQQQFPNYVK 373 (470)
Q Consensus 306 ~~~~~~~~~~~--~~~~~~-----t~--~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-l~~~~p~~~~ 373 (470)
++++. ...++ +...++ -. +.+.+.+...-++.+...+ .....+.+++...+..++.. +....-.+..
T Consensus 254 Yvr~~-~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~ 332 (428)
T KOG1549|consen 254 YVRRK-RPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSG 332 (428)
T ss_pred EEccC-CCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCc
Confidence 98861 12222 111111 01 2344444444455555443 22233333344444333322 1100000000
Q ss_pred -EEeccceeEEEEeccCCC-chhH---------------HHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHH
Q 012138 374 -EVRGRGLFNAVEFDKTAL-PVSA---------------YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 374 -~~~~~g~~~~~~~~~~~~-~~~~---------------~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
...+....+.+....... ..+. .+....|+..|+-... ...++||+.....+++|++++++.
T Consensus 333 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~-~~~~iRis~G~y~t~~di~~~~~~ 411 (428)
T KOG1549|consen 333 KSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDL-AHSSIRISIGRYTTEEDIDYLVDA 411 (428)
T ss_pred ccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhh-hcceeEEeeeeeCcHHHHHHHHHH
Confidence 111112222222001110 0000 0112233344442222 267899999999999999999999
Q ss_pred HHHHHhcccCCCCC
Q 012138 437 LHDVLELDLPKMRK 450 (470)
Q Consensus 437 l~~~l~~~~~~~~~ 450 (470)
+.+.+. .++....
T Consensus 412 i~~~v~-~~~~~s~ 424 (428)
T KOG1549|consen 412 IKKLVS-LLREMSP 424 (428)
T ss_pred HHHHHH-hccccCC
Confidence 999998 7665544
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-17 Score=160.22 Aligned_cols=289 Identities=11% Similarity=0.060 Sum_probs=179.0
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++...+|++.++++.+.+.+++++||++|+..++..+.+ +|+ .||+.++.|.+........-.
T Consensus 58 ~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~---------~GD-~Vvv~~~~Y~~t~~l~~~~l~----- 122 (394)
T PRK09028 58 RGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLK---------AGD-HLLMVDSCYEPTRDLCDKILK----- 122 (394)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEECCCcHHHHHHHHHhhh-----
Confidence 34566789999999998878899999999999999887654 566 777778887544321100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
.+...+..++..+.+++++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++|+.
T Consensus 123 ----~~Gi~v~~v~~~~~e~l~~~l~~---~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~---- 187 (394)
T PRK09028 123 ----GFGIETTYYDPMIGEGIRELIRP---NTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS---- 187 (394)
T ss_pred ----hcceEEEEECCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc----
Confidence 00011234444467888888865 7999999999999999987 99999999999999999999972
Q ss_pred CCccccccCCCCccee--eccccccC--CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
+.. +.......|++ +..|.++| .. -.|+++.++++.+.+...........+|..+..+...|+.+. -.+++
T Consensus 188 p~~--~~Pl~~GaDivv~S~tK~l~Gh~d~-~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~ 262 (394)
T PRK09028 188 PIN--SRPFEMGVDISIQAATKYIVGHSDV-MLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLG--VRLAQ 262 (394)
T ss_pred ccc--CCccccCceEEEEeCCeEecCCCCE-EEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHH
Confidence 111 22222334665 67799985 34 567777777776655422222223467777777666555442 23344
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCcee-------
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA------- 409 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~------- 409 (470)
..+++..+.+.|++... .||... ....+.|.++.++++... .....+|.+.|+--.+.+
T Consensus 263 ~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-~~~~~~f~~~l~l~~~~~slG~~~s 341 (394)
T PRK09028 263 HEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD-PKAVTALVEGMQHFKMGFSWGGFES 341 (394)
T ss_pred HHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC-HHHHHHHHHhCCcceEecccCCCcc
Confidence 44555555555554321 222110 112356889999886321 124456666554111111
Q ss_pred ---ccC-------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 ---KPT-------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 ---~~~-------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+.+++++-|.++|+
T Consensus 342 Lv~~p~~~~~~~~~~~~~~~~~liR~svGl----Ed~~dLi~Dl~~Al~ 386 (394)
T PRK09028 342 LILGVFGINKLRTATNWDFSKPLIRLHIGL----EDVDDLIADLEAGFE 386 (394)
T ss_pred eeECCCCcCccCchhhhcCCCCeEEEEeCc----CCHHHHHHHHHHHHH
Confidence 111 13679999655 456666666666665
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=165.33 Aligned_cols=285 Identities=12% Similarity=0.126 Sum_probs=179.3
Q ss_pred CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 115 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
.++...+++++++++++.+.+++++||+.|+.+++. +.+ +|+ .||+..+.|.+.............
T Consensus 45 ~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll~---------~Gd-~Vl~~~~~y~~~~~~~~~~~~~~G--- 110 (378)
T TIGR01329 45 GNPTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LLN---------NGD-EIIAGDDLYGGTDRLLTQVVPRSG--- 110 (378)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC---------CCC-EEEEcCCCchHHHHHHHHHHHHcC---
Confidence 456688999999999998999999999999887765 333 466 676767776543211100000000
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012138 195 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G 274 (470)
..+..++..|++++++++++ ++++|++|.+.||+|.+.+ +++|.++|++||+++|+|++|... ...
T Consensus 111 ------~~v~~vd~~d~~~le~~i~~---~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~-~~~ 176 (378)
T TIGR01329 111 ------VVVVHVDTTDLDKVKAALGP---KTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSP-LLC 176 (378)
T ss_pred ------cEEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc-ccC
Confidence 11345555589999999875 7899999988999999998 999999999999999999998521 111
Q ss_pred CccccccCCCCccee--eccccccCC--CcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 275 RMLASDWEEVRPDMV--ILGKALGGG--VIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~--s~sK~l~gG--~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
.. . .++ .|++ +++|.++|+ . ..|++++ ++++.+.+...........++..++.+...++.+ +...++
T Consensus 177 ~~--l-~~g--~Di~v~S~tK~l~G~~~~-~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~ 248 (378)
T TIGR01329 177 NP--L-ELG--ADIVYHSATKFLAGHSDV-MAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEK 248 (378)
T ss_pred Ch--h-hcC--CcEEEEecceeccCCccc-eeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHH
Confidence 11 1 123 3655 677998853 4 5788877 4555565554332223345666665554444333 223444
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC---
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--- 413 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--- 413 (470)
...+...+.+.|++... .||..- ....+.|.++.+++. .. ..+.+|++.|...++.++-|+
T Consensus 249 ~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~-~~--~~~~~~~~~L~~~~i~~s~G~~~s 325 (378)
T TIGR01329 249 QQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG-SV--ALSKRLVEATKLFSITVSFGSVNS 325 (378)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC-CH--HHHHHHHHhCcCcccccCCCCCCc
Confidence 55555555555554211 122100 011356788889883 22 237788888865565543221
Q ss_pred ------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 414 ------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 414 ------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+||++.+ |+.+++++-|+++|+
T Consensus 326 l~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 374 (378)
T TIGR01329 326 LISMPCFMSHASIPAEVREERGLPEDLVRLSVGI----EDVDDLISDLDIAFV 374 (378)
T ss_pred eeeCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 4689999554 667788888888776
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=158.34 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=172.8
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+|++.++++. .+.+++++||++|+..++..+.+ +|+ .||+..++|++........-...+
T Consensus 47 ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~---------~Gd-~Vl~~~~~y~~~~~~~~~~l~~~G- 114 (366)
T PRK07582 47 RASNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLR---------PGD-TVVVPADGYYQVRALAREYLAPLG- 114 (366)
T ss_pred CCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcC---------CCC-EEEEeCCCcHhHHHHHHHHHhcCe-
Confidence 356677899999999998 56777888999999988876643 465 777778888655332211000000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g 271 (470)
..+..++.++.. + .+. +++++|+++.++||+|.+.+ +++|.++|+++|+++|+|++|. .++
T Consensus 115 --------~~v~~v~~~~~~--~-~~~---~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~ 176 (366)
T PRK07582 115 --------VTVREAPTAGMA--E-AAL---AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLG 176 (366)
T ss_pred --------EEEEEECCCChH--H-Hhc---cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCccc
Confidence 112344443322 1 222 27888888888999999987 9999999999999999999985 222
Q ss_pred ccCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
. .. .+ ...|++ +++|.++| |. ++|++++ ++++++.+...........+++.+..+...|+.+. -.
T Consensus 177 ~--~p--~~---~g~Divv~S~sK~l~G~~g~-~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~--~R 246 (366)
T PRK07582 177 Q--RP--LE---LGADLVVASDTKALTGHSDL-LLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLG--LR 246 (366)
T ss_pred c--Cc--hh---cCCcEEEecccccccCCCCe-eEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHH--HH
Confidence 1 11 11 223555 78899974 66 8899887 47777766543322333467787777666665432 23
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec-c-
Q 012138 347 AERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-P- 411 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~-~- 411 (470)
.++..+++..+.+.|++... .||.... ...+.|.++.++++. ..++.+.+...++... +
T Consensus 247 ~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~------~~~~~~~~~~l~~~~~~~s 320 (366)
T PRK07582 247 FARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD------AAAAERFVAASRLVVAATS 320 (366)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC------HHHHHHHHHhCCcceeccc
Confidence 45666677777777776432 2221111 112468889998852 2233333433344432 0
Q ss_pred -----------------CCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 412 -----------------THDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 412 -----------------~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
..++.||+++.+...++.|+++.++|.
T Consensus 321 ~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~ 364 (366)
T PRK07582 321 FGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD 364 (366)
T ss_pred CCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 114689999877655555555555543
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-17 Score=159.34 Aligned_cols=301 Identities=19% Similarity=0.253 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~ 173 (470)
.+..+++.+.++....+. ..+...++++.+++++|.++++.++|||.|+.+|++++-- ++|+ .|++..
T Consensus 5 ~e~~~~v~~~l~s~~~~~---~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~--------~~gd-eVi~p~ 72 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLST---YGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGL--------GPGD-EVIVPA 72 (363)
T ss_dssp HHHHHHHHHHHHHTCCSS---SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTG--------GTTS-EEEEES
T ss_pred HHHHHHHHHHHHhCCccC---CCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCC--------CcCc-eEecCC
Confidence 355667777777654332 1456789999999999999999999999999999997532 2455 777777
Q ss_pred cCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 174 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
.+|..........+..+.+ .+..++...+ |++++++++++ ++++|++.+.. |...+ +++|.++
T Consensus 73 ~t~~~~~~ai~~~G~~pv~----~Di~~~~~~i---d~~~~~~~i~~---~t~ai~~~h~~---G~~~d----~~~i~~~ 135 (363)
T PF01041_consen 73 YTFPATASAILWAGAEPVF----VDIDPETLNI---DPEALEKAITP---KTKAILVVHLF---GNPAD----MDAIRAI 135 (363)
T ss_dssp SS-THHHHHHHHTT-EEEE----E-BETTTSSB----HHHHHHHHHT---TEEEEEEE-GG---GB-------HHHHHHH
T ss_pred CcchHHHHHHHHhccEEEE----EeccCCcCCc---CHHHHHHHhcc---CccEEEEecCC---CCccc----HHHHHHH
Confidence 7776554444444433322 2332333344 89999999997 88999976634 55555 9999999
Q ss_pred HHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEe-cHHHHhhcCcC---C-----
Q 012138 254 CSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLA-DKEVMLCIQPG---E----- 319 (470)
Q Consensus 254 ~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~-~~~~~~~~~~~---~----- 319 (470)
|++||++||.|.+|+ |--..|+. .|-.-|+.+|| |.++.| -.|+++. ++++.+.++.. .
T Consensus 136 ~~~~~i~lIeD~a~a~g~~~~g~~-----~G~~gd~~~fSf~~~K~i~~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~ 208 (363)
T PF01041_consen 136 ARKHGIPLIEDAAQAFGARYKGRP-----VGSFGDIAIFSFHPTKIITTG--EGGAVVTNDPELAERARALRNHGRSRDA 208 (363)
T ss_dssp HHHTT-EEEEE-TTTTT-EETTEE-----TTSSSSEEEEESSTTSSS-SS--S-EEEEESTHHHHHHHHHHTBTTEETSE
T ss_pred HHHcCCcEEEccccccCceeCCEe-----ccCCCCceEecCCCCCCCcCC--CCeeEEecHHHHHHHhhhhhccCcCccc
Confidence 999999999999998 32223322 12222666665 888755 3456665 45555544321 1
Q ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-------ccceeEE
Q 012138 320 ---------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-------GRGLFNA 383 (470)
Q Consensus 320 ---------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-------~~g~~~~ 383 (470)
.+..+..+.+.++.+.+.|+.+. ...++.+++..++.+.|..+.. +.... .....+.
T Consensus 209 ~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~--~~~~~R~~~a~~y~~~L~~~~~-----~~~~~~~~~~~~~~~~~f~ 281 (363)
T PF01041_consen 209 FRRYRHELPPGYNFRMSELQAAIGLAQLKRLD--EIIARRRENAQRYREALAGIPG-----IKPPPIPDGAERSSYYRFP 281 (363)
T ss_dssp CSTTEESSSS--B-B-BHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHTTGTT-----EEEEGCGTTTEEBCESSEE
T ss_pred cccccccccCCcccccHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCCC-----ccccccccccccccccccc
Confidence 23445688999999988887664 3566777778888888776532 21111 2222344
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC----------------------------CCEEEEecCCCCCHHHHHHHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH----------------------------DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------------------------~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
+.++... ..+..++.+.|.++||.+.+.. ...+.|-.....++++++++++
T Consensus 282 i~~~~~~-~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~ 360 (363)
T PF01041_consen 282 IRLPDEA-LADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAE 360 (363)
T ss_dssp EEETCCG-CSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHH
T ss_pred ccccccc-cchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhh
Confidence 4444321 1257889999999999876431 2345565556789999999998
Q ss_pred HHH
Q 012138 436 ALH 438 (470)
Q Consensus 436 ~l~ 438 (470)
.|+
T Consensus 361 ~ir 363 (363)
T PF01041_consen 361 AIR 363 (363)
T ss_dssp HHH
T ss_pred ccC
Confidence 874
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-16 Score=158.61 Aligned_cols=313 Identities=14% Similarity=0.068 Sum_probs=193.2
Q ss_pred CCHHHHHHHHHHH-HHccccCC--CCC--CCcHHHHHH----HHhhhhCCCe-EE-e---cCChhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQA-EKLTLSSR--AFY--NDKFPVFAE----RLTSMFGYDM-VL-P---MNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~-~~~~~~~~--~~~--~~~~~~l~~----~l~~~~~~~~-v~-~---~~sGteA~~~al~~~~~~~~ 157 (470)
..|.+.+++...+ .++..++. .++ .....++++ +..+.++.+. .+ + .+||+.||.+++..+..
T Consensus 46 ~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~--- 122 (475)
T PLN03226 46 TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ--- 122 (475)
T ss_pred CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC---
Confidence 4578999888888 55544321 121 234555554 3444555443 22 2 38999999999988765
Q ss_pred hcccCCCCCcEEEEEccC---c--cccccchhcccCCcccccCCCCCCCCeeeecCC------CHHHHHHHHHhcCCCeE
Q 012138 158 VKKKFSIDEAIIVSCCGC---F--HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG------DITALEKIFKESGDQIA 226 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~---y--hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~ 226 (470)
+|+ .|+..+.. + |++......++....+ -+...+++| |+++|++++.+. +++
T Consensus 123 ------pgD-~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~--------~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pk 185 (475)
T PLN03226 123 ------PHD-RIMGLDLPHGGHLSHGYQTDGKKISATSIY--------FESMPYRLDESTGLIDYDKLEKKAMLF--RPK 185 (475)
T ss_pred ------CCC-EEEECCCCcCcchhhhhhhcccccccceEE--------EEeeeeeecCCCCCcCHHHHHHHHhhc--CCe
Confidence 566 66664421 1 4443322222221111 001133445 999999999764 566
Q ss_pred EEEE-ccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcce
Q 012138 227 GFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPV 302 (470)
Q Consensus 227 ~vi~-epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~i 302 (470)
.|++ ++ ..|...| +++|.++|++||++|++|++|. |+...+- . ....+ ..|++ +++|+|.|. +.
T Consensus 186 lIv~~~S---~~s~~~D----~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~-~-~~p~~-~~Div~~t~hK~L~GP--~G 253 (475)
T PLN03226 186 LIIAGAS---AYPRDWD----YARMRKIADKVGALLMCDMAHISGLVAAQE-A-ASPFE-YCDVVTTTTHKSLRGP--RG 253 (475)
T ss_pred EEEEecC---cCCCccC----HHHHHHHHHHcCCEEEEEchhhhCcccCCC-C-CCCCC-CCeEEEecCcccccCC--Cc
Confidence 6666 33 2556666 8999999999999999999998 5422211 1 11111 34665 667999764 33
Q ss_pred eEEEecHHHH-----------h---hcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHH
Q 012138 303 SAVLADKEVM-----------L---CIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 303 g~v~~~~~~~-----------~---~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l 364 (470)
|++++++++. + .+.... ....-+.++..+++..++++.+.+ +.+.+++.++.++|.+.|.+.
T Consensus 254 g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 254 GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6677777543 2 121111 111223567777788888998765 346888889999999988774
Q ss_pred HhhCCCceEEEe--ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---------CCCEEEE----ecCCCCCHHH
Q 012138 365 QQQFPNYVKEVR--GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------HDTIVRL----TPPLSISSNE 429 (470)
Q Consensus 365 ~~~~p~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------~~~~iR~----~~~~~~t~e~ 429 (470)
+ +..+. ....+..+.+... +.+..++.+.|.+.||++... .+..+|+ .....++++|
T Consensus 334 G------~~l~~~~t~~hi~lv~~~~~--gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d 405 (475)
T PLN03226 334 G------YKLVTGGTDNHLVLWDLRPL--GLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKD 405 (475)
T ss_pred C------CEEEcCCCCCCEEEEEccCC--CCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHH
Confidence 2 22222 1235555655322 236778888899999998642 2566888 3446688999
Q ss_pred HHHHHHHHHHHHhccc
Q 012138 430 LQEGSKALHDVLELDL 445 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~ 445 (470)
++++.+.|.++++ ..
T Consensus 406 ~~~ia~~i~~~~~-~~ 420 (475)
T PLN03226 406 FEKVAEFLHRAVT-IA 420 (475)
T ss_pred HHHHHHHHHHHHH-Hh
Confidence 9999999999998 54
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-16 Score=154.74 Aligned_cols=331 Identities=13% Similarity=0.049 Sum_probs=201.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC----eEEe--cCChhHHHHHHHHHHHHhchh---cc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD----MVLP--MNTGAEGVETALKLARKWGYV---KK 160 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~----~v~~--~~sGteA~~~al~~~~~~~~~---~~ 160 (470)
.+|++.+.+...+......+... ..+..++..+++++++|.+ .+.+ |+||||||..|+..++..... ..
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999888886432222211 2245566778888888754 4555 799999999999877632111 01
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
+....+..|++.. .-|-+...+....+- ...+.+..++...+ |+++|++++++ ++.+|++...++++|.+
T Consensus 133 g~~~~~~~ii~s~-~~H~sv~ka~~~lg~---~v~~i~~d~~~~~v---d~~~L~~~i~~---~t~lV~~t~g~t~tG~i 202 (431)
T TIGR01788 133 GKPTDKPNLVMGS-NVQVCWEKFARYFDV---ELREVPMDPGRYVI---DPEQVVEAVDE---NTIGVVCILGTTYTGEY 202 (431)
T ss_pred CCCCCCcEEEEcC-cchHHHHHHHHHcCc---eeEEEecCCCceee---CHHHHHHHHhh---CCeEEEEEeCCCCCccc
Confidence 1000122344433 336665544433221 11112222211233 89999999986 68888888889999999
Q ss_pred cCChhhHHHHHHHHHhc------CcEEEEeccccCCcc---cCCc-cccccCCCCcceeecc--ccccCCCcceeEEEec
Q 012138 241 IPPDGYLKAVRDLCSKY------NILMIADEIQSGLAR---SGRM-LASDWEEVRPDMVILG--KALGGGVIPVSAVLAD 308 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~------gillI~Dev~~g~g~---~G~~-~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~ 308 (470)
.| +++|.++|+++ |+++++|.+|+|+.. .++. +.+.. ...|.++++ |.+.+.. .+|+++.+
T Consensus 203 dp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~--~~~DSis~s~HK~~~~P~-g~G~l~~r 275 (431)
T TIGR01788 203 ED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRL--PRVKSINVSGHKYGLVYP-GVGWVIWR 275 (431)
T ss_pred CC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCC--CCceEEEECchhccCCCC-CcEEEEEe
Confidence 99 99999999999 999999999996421 1221 11221 134777776 6654555 88998876
Q ss_pred HH--HHhhcCc---CCc----cCCCCCCHH--HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 309 KE--VMLCIQP---GEH----GSTFGGNPL--ASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 309 ~~--~~~~~~~---~~~----~~t~~~~~~--~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+. +.+.+.. ... ..++..+.. .....+..|..+.. +.+.++..++.+++.+.|+++. .+..
T Consensus 276 ~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~-----~~el 350 (431)
T TIGR01788 276 DEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLG-----PFEI 350 (431)
T ss_pred ChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEEE
Confidence 54 3233211 110 012222211 22334444444443 4466677778888888877642 2332
Q ss_pred Ee--ccceeEEEEeccCC-CchhHHHHHHHHHHcCceec----cC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 375 VR--GRGLFNAVEFDKTA-LPVSAYDICLKMKERGILAK----PT---HDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 375 ~~--~~g~~~~~~~~~~~-~~~~~~~~~~~l~~~Gv~~~----~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
+. +...++.|.+.... ...+..++.++|.++|+.+. |. +.-++|++....++++.++++++.|++++. +
T Consensus 351 ~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~-~ 429 (431)
T TIGR01788 351 ISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALA-Y 429 (431)
T ss_pred eeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH-h
Confidence 22 34556666664311 01356789999999998642 22 235689987667899999999999999987 6
Q ss_pred c
Q 012138 445 L 445 (470)
Q Consensus 445 ~ 445 (470)
+
T Consensus 430 ~ 430 (431)
T TIGR01788 430 L 430 (431)
T ss_pred h
Confidence 5
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=164.27 Aligned_cols=291 Identities=17% Similarity=0.183 Sum_probs=180.4
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|++.++++.|.+..++++||++|+..++..+.. +|+ .|++..+.|++.............
T Consensus 61 ~~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~---------~GD-~Vlv~~~~y~~t~~~~~~~~~~~G-- 128 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIAS---------AGD-EIVSSSSLYGGTYNLFAHTLPKLG-- 128 (431)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEccCchhhHHHHHHHHHHhCC--
Confidence 45677899999999999999999999999999999986654 466 677777776543221111000000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|++||+++|+|++++. +..
T Consensus 129 -------v~v~~vd~~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a~-~~~ 193 (431)
T PRK08248 129 -------ITVKFVDPSDPENFEAAITD---KTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFAS-PYL 193 (431)
T ss_pred -------EEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCCc-ccc
Confidence 11345555689999999875 7899998888999999998 99999999999999999999861 111
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEec-HHHH-----------------------h----------hcC
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVM-----------------------L----------CIQ 316 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~-~~~~-----------------------~----------~~~ 316 (470)
... . .++ .|++ +++|.++| |. ++|+++.. .+.. + ...
T Consensus 194 ~~p--l-~~g--aDivv~S~tK~lgg~g~-~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (431)
T PRK08248 194 LRP--I-EHG--ADIVVHSATKFIGGHGT-SIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARV 267 (431)
T ss_pred CCh--h-HcC--CCEEEEcCccccCCCCC-ceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHH
Confidence 111 1 133 3655 67799985 65 77776653 2210 0 000
Q ss_pred cCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EE-eccceeE
Q 012138 317 PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EV-RGRGLFN 382 (470)
Q Consensus 317 ~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~-~~~g~~~ 382 (470)
..........+|..++.....|+.+ +-..++..+++..+.+.|++... .||.... .. .+.|.++
T Consensus 268 ~~~~~~G~~l~p~~a~l~~rgl~tl--~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~ 345 (431)
T PRK08248 268 QLLRDLGAALSPFNSFLLLQGLETL--HLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAIL 345 (431)
T ss_pred HHHHhcCCCCCHHHHHHHhcCcCcH--HHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEE
Confidence 0000112345666666665555433 22445566666677777766431 2221100 11 3458899
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHH
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
.+++.... ..+.+|.+.|.--.+.++ |. .++.|||++.+ |+.+++++
T Consensus 346 sf~l~~~~--~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----Ed~~dL~~ 419 (431)
T PRK08248 346 TFGIKGGV--EAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGT----EAIDDILD 419 (431)
T ss_pred EEEecCCH--HHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHH
Confidence 99885421 245556665542111111 11 15689999554 67778888
Q ss_pred HHHHHHhcccC
Q 012138 436 ALHDVLELDLP 446 (470)
Q Consensus 436 ~l~~~l~~~~~ 446 (470)
-|.++|+ ..+
T Consensus 420 Dl~~Al~-~~~ 429 (431)
T PRK08248 420 DLRQAIR-QSQ 429 (431)
T ss_pred HHHHHHH-hhh
Confidence 8888877 543
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=162.09 Aligned_cols=288 Identities=15% Similarity=0.183 Sum_probs=181.1
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++...+|++.++++.|.+.+++++||++|+.++++.+.+ +|+ .||+..+.|++...........
T Consensus 60 ~~~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all~---------pGd-~VIv~~~~y~~t~~~~~~~~~~---- 125 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQ---------PGD-EFIAARKLYGGSINQFGHAFKS---- 125 (427)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhC---------CCC-EEEEecCcchhHHHHHHHHHHh----
Confidence 44667889999999999988999999999999999987754 565 7778888876542211000000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
....+..++.+|++++++++++ ++++|++|.++||+|.+.| +++|.++|++||+++|+|++|+.
T Consensus 126 -----~G~~v~~vd~~d~~~l~~ai~~---~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~---- 189 (427)
T PRK05994 126 -----FGWQVRWADADDPASFERAITP---RTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS---- 189 (427)
T ss_pred -----cCcEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----
Confidence 0011345555689999999875 7899999999999999998 99999999999999999999972
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEec-HH-----------------------HHhhcC-------c--
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KE-----------------------VMLCIQ-------P-- 317 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~-~~-----------------------~~~~~~-------~-- 317 (470)
+.. .......+|++ +++|.++| |- .+|+++.. .. +.+.+. .
T Consensus 190 ~~~--~~pl~~gaDivv~S~tK~lgg~~~-~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (427)
T PRK05994 190 PYL--IRPIEHGADIVVHSLTKFLGGHGN-SMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARV 266 (427)
T ss_pred ccc--CCccccCCcEEEEcCccccCCCCC-cEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHH
Confidence 111 22223455766 67799985 32 56655542 11 111000 0
Q ss_pred -CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------E-EeccceeE
Q 012138 318 -GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------E-VRGRGLFN 382 (470)
Q Consensus 318 -~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~-~~~~g~~~ 382 (470)
.........+|..++.+...|+.+. ...++..+++..+.+.|++... .||.... . ..+.|.++
T Consensus 267 ~~~~~~G~~~~~~~A~l~~~~l~tL~--~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~ 344 (427)
T PRK05994 267 LGLRDLGPAISPFNAFLILTGIETLP--LRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVF 344 (427)
T ss_pred HHHHhcCCCCCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEE
Confidence 0011112367777777766665543 3556666677777777765431 2221100 1 13568889
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHH
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
.+++.... ....+|++.|.--.+.++ |. .++.|||++.+ |+.+.+++
T Consensus 345 sf~l~~~~--~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~~dli~ 418 (427)
T PRK05994 345 TFGLKGGY--EAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGI----EDVDDIIA 418 (427)
T ss_pred EEEecCCH--HHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEecc----CCHHHHHH
Confidence 99885321 244556655532111111 11 14689999554 56777777
Q ss_pred HHHHHHh
Q 012138 436 ALHDVLE 442 (470)
Q Consensus 436 ~l~~~l~ 442 (470)
-|.++|+
T Consensus 419 dl~~Al~ 425 (427)
T PRK05994 419 DLEQALA 425 (427)
T ss_pred HHHHHHh
Confidence 7777775
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-17 Score=160.40 Aligned_cols=285 Identities=11% Similarity=0.118 Sum_probs=182.0
Q ss_pred CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCCcc
Q 012138 115 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNE 191 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~ 191 (470)
.++...+|++.++++.+.+.++.++||+.|+.+++..+.. +|+ .||+..+.|.+..... +..-+
T Consensus 59 ~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~---------~GD-~VI~~~~~Y~~T~~~~~~~l~~~G--- 125 (432)
T PRK06702 59 GNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICS---------SGD-HLLCSSTVYGGTFNLFGVSLRKLG--- 125 (432)
T ss_pred CCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcC---------CCC-EEEECCCchHHHHHHHHHHHHHCC---
Confidence 3677899999999999988999999999999999986654 566 7788888875433221 11111
Q ss_pred cccCCCCCCCCeeeecCC-CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 192 AIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+.++..+ |+++++++|++ +|++|++|.+.||++.+.+ +++|.++|++||+++|+|++++
T Consensus 126 ---------i~v~~vd~~~d~~~l~~~I~~---~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~-- 187 (432)
T PRK06702 126 ---------IDVTFFNPNLTADEIVALAND---KTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA-- 187 (432)
T ss_pred ---------CEEEEECCCCCHHHHHHhCCc---CCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC--
Confidence 112344443 88999999986 8999999999999999998 9999999999999999999974
Q ss_pred cccCCccccccCCCCccee--eccccccCCCcceeEEEe-cH----------HHHh---------------------hcC
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLA-DK----------EVML---------------------CIQ 316 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~-~~----------~~~~---------------------~~~ 316 (470)
+ ...+..+..-.|++ |++|.++|--.-+|.++. .. ++.+ ..+
T Consensus 188 --t--P~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (432)
T PRK06702 188 --T--PYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKAR 263 (432)
T ss_pred --c--hhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHH
Confidence 1 11123222334654 888988741113333222 11 1110 000
Q ss_pred -cCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EE-ecccee
Q 012138 317 -PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EV-RGRGLF 381 (470)
Q Consensus 317 -~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~-~~~g~~ 381 (470)
..........+|+.+..+...|+.+. -..++..++...+.+.|++... .||.... .. .+.|.+
T Consensus 264 ~~~~~~~g~~~sp~~a~l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~ 341 (432)
T PRK06702 264 VQLLRDYGNCMSPFNAYISNIGLETLH--LRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGV 341 (432)
T ss_pred HHHHHHccCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceE
Confidence 01122334688888888877776543 3445556667777777765321 2221111 11 356788
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceec----------cC-----------------CCCEEEEecCCCCCHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----------~~-----------------~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+.+++.... ..+.+|++.|+--.+.++ |. .++.|||++. -|+.+.++
T Consensus 342 ~sf~l~~~~--~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG----lEd~eDLi 415 (432)
T PRK06702 342 LTFGIKGGL--EAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVG----IEDVSDII 415 (432)
T ss_pred EEEEecCCH--HHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEec----cCCHHHHH
Confidence 999885321 245566665532111111 11 1468999954 36788999
Q ss_pred HHHHHHHh
Q 012138 435 KALHDVLE 442 (470)
Q Consensus 435 ~~l~~~l~ 442 (470)
+-|.++|+
T Consensus 416 ~Dl~~Al~ 423 (432)
T PRK06702 416 ADLEAALV 423 (432)
T ss_pred HHHHHHHh
Confidence 99999988
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-17 Score=162.08 Aligned_cols=283 Identities=12% Similarity=0.120 Sum_probs=179.2
Q ss_pred CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCcc
Q 012138 115 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDNE 191 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~ 191 (470)
.++.+.+++++++++.+.+.+++++||+.|+.+++. +.+ +|+ .||+..+.|.+.... .+...+.
T Consensus 131 gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il~-ll~---------~GD-~VI~~~~~y~~t~~ll~~~l~~~G~-- 197 (464)
T PLN02509 131 GNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIK---------NGE-EIVAGDDVYGGSDRLLSQVVPRSGV-- 197 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHH-HhC---------CCC-EEEEcCCchhhHHHHHHHHHHHCCe--
Confidence 356789999999999999999999999998865553 333 466 677788887553211 1111111
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.+..++..|+++++++++. ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++|.. +
T Consensus 198 ----------~v~~vd~~d~e~l~~ai~~---~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~-~ 259 (464)
T PLN02509 198 ----------VVKRVNTTNLDEVAAAIGP---QTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMS-P 259 (464)
T ss_pred ----------EEEEeCCCCHHHHHHhCCc---CCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCccc-c
Confidence 1234455689999988865 7899999999999999987 99999999999999999999862 1
Q ss_pred ccCCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
..+.. .+...|++ +++|.++| |-.-.|++++ ++.+.+.+...........+|..++.+...|+.+. ...
T Consensus 260 ~~~~p-----l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~--~R~ 332 (464)
T PLN02509 260 VLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRI 332 (464)
T ss_pred ccCCh-----hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHH--HHH
Confidence 12221 12234665 67799885 3103555665 44444433221111122357888888888777663 355
Q ss_pred HHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCcee---
Q 012138 348 ERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA--- 409 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~--- 409 (470)
++..+++.++.+.|++... .||... ....+.|.++.+.+... ..+..|++.|.- .++-.
T Consensus 333 ~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~---~~~~~f~~~l~l~~~a~slG~~ 409 (464)
T PLN02509 333 EKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV---ALSKHLVETTKYFSIAVSFGSV 409 (464)
T ss_pred HHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCH---HHHHHHHHcCCcceEcccCCCC
Confidence 6667777777777765321 222110 11235688888877321 245566665541 11111
Q ss_pred -----ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 -----KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 -----~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+++++++-|+++|+
T Consensus 410 ~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl----E~~~DLi~Dl~~Al~ 460 (464)
T PLN02509 410 KSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFR 460 (464)
T ss_pred CceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHc
Confidence 011 15789999544 678888888888876
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-17 Score=162.19 Aligned_cols=286 Identities=14% Similarity=0.155 Sum_probs=173.3
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCcccccc--chhcccCCcc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDNE 191 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~--~~~~~~~~~~ 191 (470)
+.++...+|++.++++.|.+..+.++||+.|+..++..+.+ +|+ .||+..+.|.+... ..+...+
T Consensus 44 ~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~---------~Gd-~Vv~~~~~y~~t~~~~~~l~~~G--- 110 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLR---------AGD-HLVSSQFLFGNTNSLFGTLRGLG--- 110 (397)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcC---------CCC-EEEECCCccccHHHHHHHHHhcC---
Confidence 45677899999999999988888999999999999987654 566 67777776643321 1111111
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
..+..++..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++|+..
T Consensus 111 ---------~~v~~v~~~d~e~l~~~l~~---~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~- 173 (397)
T PRK05939 111 ---------VEVTMVDATDVQNVAAAIRP---NTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSP- 173 (397)
T ss_pred ---------CEEEEECCCCHHHHHHhCCC---CCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccc-
Confidence 11345555689999999875 7899999999999999987 999999999999999999998621
Q ss_pred ccCCccccccCCCCcceeeccccccC-CCcceeEEEecHHH---------Hhh-------------cCcC-CccCCCCCC
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLADKEV---------MLC-------------IQPG-EHGSTFGGN 327 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~g-G~~~ig~v~~~~~~---------~~~-------------~~~~-~~~~t~~~~ 327 (470)
..+.....|.+..+.+++|.++| |. .+|+++..... .+. ++.. .....-..+
T Consensus 174 ---~~~~~~~~gaDivv~S~sK~~~g~g~-~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 249 (397)
T PRK05939 174 ---WLFRPKDVGASLVINSLSKYIAGHGN-ALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLS 249 (397)
T ss_pred ---cccCccccCCEEEEecCeecccCCCC-eEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCC
Confidence 11111112332233488899996 66 78887663211 110 1000 000111245
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchh
Q 012138 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVS 394 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~ 394 (470)
|..+......++.+. -..++..+++..+.+.|+.... .||... ....+.|.++.+++... ..
T Consensus 250 p~~a~l~~rgl~tl~--~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~---~~ 324 (397)
T PRK05939 250 SEAAHRIAIGAETLA--LRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG---ID 324 (397)
T ss_pred HHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH---HH
Confidence 555554444444332 1223333355555555554221 222110 01246788999988632 24
Q ss_pred HHHHHHHHHH--cCcee--------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 395 AYDICLKMKE--RGILA--------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 395 ~~~~~~~l~~--~Gv~~--------~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
..+|.+.|+- .+... .|. .++.|||++.+ |+++.+++-|.++|+
T Consensus 325 ~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGl----Ed~~dLi~dl~~Al~ 395 (397)
T PRK05939 325 CFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGI----EDEADLIADFEQALD 395 (397)
T ss_pred HHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 5556665542 12111 111 14689999554 577888888887775
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-16 Score=165.64 Aligned_cols=302 Identities=14% Similarity=0.142 Sum_probs=197.0
Q ss_pred HHHHHHHHhhhhCCCeEEecCChh----HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 119 FPVFAERLTSMFGYDMVLPMNTGA----EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~~~sGt----eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
..++++++++++|.+.|.|+++++ +|+..+++...+ .+|. ..+++||+.. +-||.......+.+-...
T Consensus 570 ~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~----~~Gd-~~r~~vli~~-~aH~sn~a~a~~~G~~vv-- 641 (993)
T PLN02414 570 FEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHL----SRGD-HHRNVCIIPV-SAHGTNPASAAMCGMKIV-- 641 (993)
T ss_pred HHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHh----ccCC-CCCCEEEeCC-CcCccCHHHHHHCCCEEE--
Confidence 457889999999999999998877 677777765543 1110 0123455444 449887766555332111
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cc
Q 012138 195 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-AR 272 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~ 272 (470)
+.+...+ ..+ |+++|+++++++.+++++|++...+|-+|...| +++|.++|+++|+++++|.+|. +. +.
T Consensus 642 -~v~~d~~-G~v---Dle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~a~~~l 712 (993)
T PLN02414 642 -VVGTDAK-GNI---NIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANMNAQVGL 712 (993)
T ss_pred -EeccCCC-CCc---CHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCHHhccCc
Confidence 1111111 122 899999999865457899998887999999998 9999999999999999999996 22 11
Q ss_pred cCCccccccCCCCcceeec--ccccc-----CCCcceeEEEecHHHHhhcCcCC-----------c-c--CCCC----CC
Q 012138 273 SGRMLASDWEEVRPDMVIL--GKALG-----GGVIPVSAVLADKEVMLCIQPGE-----------H-G--STFG----GN 327 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~s~--sK~l~-----gG~~~ig~v~~~~~~~~~~~~~~-----------~-~--~t~~----~~ 327 (470)
. ....+ ..|++.+ .|+|+ ||. .+|.+.+++++...+.... . . .+.. ++
T Consensus 713 ~----~p~~~--GaD~~~~s~HK~f~~P~G~GGP-g~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~ 785 (993)
T PLN02414 713 T----SPGFI--GADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGS 785 (993)
T ss_pred C----Ccccc--CCCEEEecCCccCCcCcccCCC-CeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhh
Confidence 1 01123 3477766 48766 555 7899999988776653210 0 0 1111 23
Q ss_pred HHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCC----CchhHHHHH
Q 012138 328 PLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTA----LPVSAYDIC 399 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~----~~~~~~~~~ 399 (470)
.+.+.++...++.+..+.+ .++...++++++++|.+. ++ +....+.|. +--+.++... .+.+..++.
T Consensus 786 al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~---~~--~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~ 860 (993)
T PLN02414 786 ALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH---YP--VLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVA 860 (993)
T ss_pred HHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh---CC--ccccCCCCCeeeeEEEeccccccccCCCHHHHH
Confidence 3444555566666666666 677778899999988762 21 111111221 1111111111 124568899
Q ss_pred HHHHHcCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 400 LKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 400 ~~l~~~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
++|.+.||..... ..+.+|++|....|++|||+++++|..+.. |+.++..
T Consensus 861 krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~-e~~~~~~ 913 (993)
T PLN02414 861 KRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRE-EIADIEN 913 (993)
T ss_pred HHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHH-HHHHHhc
Confidence 9999989976421 277899999999999999999999999998 8876444
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=161.85 Aligned_cols=288 Identities=16% Similarity=0.187 Sum_probs=177.1
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc-CCccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~-~~~~~ 192 (470)
+.++...++++.++++.|.+.+++++||++|+.+++..+.. +|+ .||+....|++. ...+... ...+
T Consensus 61 ~~~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~---------~Gd-~Vi~~~~~y~~t-~~~~~~~l~~~G- 128 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMG---------AGS-HIVASSALYGGS-HNLLHYTLRRFG- 128 (433)
T ss_pred CcChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEeCCccHHH-HHHHHHHHhhCC-
Confidence 45677899999999999988899999999999999886643 455 677777776543 2221110 0000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g 271 (470)
..+..++.+|+++|+++|++ +|++|+++.+.||+|.+.| +++|.++|++||+++|+|.+|+ ++.
T Consensus 129 --------i~v~~vd~~d~~~l~~~i~~---~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a~~~~ 193 (433)
T PRK08134 129 --------IETTFVKPGDIDGWRAAIRP---NTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFTTPYL 193 (433)
T ss_pred --------eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 11345555589999999986 8999999999999999998 9999999999999999999997 221
Q ss_pred ccCCccccccCCCCccee--eccccccC-CCcceeEEEec-HHH-------HhhcCc-----------------------
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEV-------MLCIQP----------------------- 317 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~-~~~-------~~~~~~----------------------- 317 (470)
. .......|++ +..|.++| |- .+|.++.. ..+ ...+.+
T Consensus 194 -----~--~pl~~GaD~vv~S~tK~l~g~g~-~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 265 (433)
T PRK08134 194 -----L--RPFEHGADLVYHSATKFLGGHGT-AIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRA 265 (433)
T ss_pred -----C--CchhcCCCEEEeccccccCCCCC-ceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHH
Confidence 1 1112234666 55588874 43 35554432 110 000000
Q ss_pred ---CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EE-eccce
Q 012138 318 ---GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EV-RGRGL 380 (470)
Q Consensus 318 ---~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~-~~~g~ 380 (470)
.........++..++.+...|+.+ +...++..+++.++.+.|++... .||.... .. .+.|.
T Consensus 266 ~~~~~~~~G~~ls~~~A~l~~~gL~tl--~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg 343 (433)
T PRK08134 266 RREGLRDFGACLSPMNAWQLLQGIETL--PLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGS 343 (433)
T ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCce
Confidence 001111235666666665555443 33455556666666666665321 2231110 11 35688
Q ss_pred eEEEEeccCCCchhHHHHHHHHHHcCcee----------ccC-----------------CCCEEEEecCCCCCHHHHHHH
Q 012138 381 FNAVEFDKTALPVSAYDICLKMKERGILA----------KPT-----------------HDTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~----------~~~-----------------~~~~iR~~~~~~~t~e~i~~~ 433 (470)
++.+++.... ..+.+|.+.|.--.+.. .|. .++.|||++.+ |+.+++
T Consensus 344 ~~s~~l~~~~--~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl----E~~~dl 417 (433)
T PRK08134 344 VFSFDLKGGR--AAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGL----EDADDL 417 (433)
T ss_pred EEEEEecCCH--HHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHH
Confidence 9999886321 24556666554211111 111 15789999554 567788
Q ss_pred HHHHHHHHhccc
Q 012138 434 SKALHDVLELDL 445 (470)
Q Consensus 434 ~~~l~~~l~~~~ 445 (470)
++-|.++|+ ..
T Consensus 418 i~dl~~Al~-~~ 428 (433)
T PRK08134 418 IDDLKRALK-AA 428 (433)
T ss_pred HHHHHHHHH-hh
Confidence 888888877 54
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=160.63 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=172.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++...++++.++++.|.+..+.+++|+.|+..++. +.. +|+ .||+..+.|++............+
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~---------~Gd-~Vlv~~~~y~~~~~~~~~~~~~~G-- 117 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLS---------KGD-HVLISEDVYGGTYRMITEVLSRFG-- 117 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhC---------CCC-EEEEccCccchHHHHHHHHHHHcC--
Confidence 3466788999999999988788888999999988885 333 455 677778887653321111100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|+++|+++|+|++|..+. .
T Consensus 118 -------~~v~~v~~~d~~~l~~~l~~---~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~~-~ 182 (390)
T PRK08064 118 -------IEHTFVDMTNLEEVAQNIKP---NTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTPL-L 182 (390)
T ss_pred -------CEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCccc-c
Confidence 11345555688999988875 7899998888999999998 9999999999999999999987321 1
Q ss_pred CCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
... . .++ .|++ +++|.++| |. -.|++++ ++++++.++..........++..+..+...++.+ ....+
T Consensus 183 ~~~--~-~~g--~Divv~S~tK~~~G~~~~-laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~ 254 (390)
T PRK08064 183 QKP--L-DLG--ADVVLHSATKFLAGHSDV-LAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLE 254 (390)
T ss_pred cCc--h-hhC--CcEEEeecceeccCCccc-eeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHH
Confidence 111 1 123 3555 77799874 32 3465555 5678777765444333445555555544333322 22334
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHcCce---eccC
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL---AKPT 412 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~---~~~~ 412 (470)
+..++...+.+.|++... .||... ....+.|.++.++++.. .+...|.+.| ++. ++-|
T Consensus 255 ~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~---~~~~~f~~~l---~l~~~~~s~G 328 (390)
T PRK08064 255 HSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE---EAVRQFVSHV---KLPVFAVSLG 328 (390)
T ss_pred HHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH---HHHHHHHHhC---CcceEcccCC
Confidence 444445555555554321 122100 12246788888888531 1333343333 441 1101
Q ss_pred ---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 413 ---------------------------HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 413 ---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.++.+|+++.+..+++.|+++.++|++
T Consensus 329 ~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~ 382 (390)
T PRK08064 329 AVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSY 382 (390)
T ss_pred CCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 157899998776666666655555554
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=154.36 Aligned_cols=291 Identities=10% Similarity=0.005 Sum_probs=177.9
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
...++....|+++++.+.+.+..++++||++|+..++..+.+ +|+ .||+.++.|.+...........-+
T Consensus 60 R~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~---------~GD-~Vlv~~~~Y~~~~~l~~~~l~~~G- 128 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLS---------PGD-HALIVDSVYYPTRHFCDTMLKRLG- 128 (395)
T ss_pred CCCChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcC---------CCC-EEEEccCCcHHHHHHHHHHHHhcC-
Confidence 345778899999999888766777788899999999987654 566 777778888664321111100000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
..+..++.++.+++++++++ ++++|++|.+.||++.+.+ +++|.++|+++|+++|+|++++...
T Consensus 129 --------i~v~~vd~~~~e~l~~al~~---~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p~- 192 (395)
T PRK05967 129 --------VEVEYYDPEIGAGIAKLMRP---NTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATPL- 192 (395)
T ss_pred --------eEEEEeCCCCHHHHHHhcCc---CceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCce-
Confidence 11234444456789988876 7999999988999998887 9999999999999999999997321
Q ss_pred cCCccccccCCCCccee--eccccccC--CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
.+....+|. |++ +.+|.++| .. -.|+++.++++.+.+........-..+|..+......|+.+.- ..+
T Consensus 193 ---~~~pl~~Ga--Divv~S~tKy~~Gh~d~-~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~l--R~~ 264 (395)
T PRK05967 193 ---YFRPLDFGV--DISIHAATKYPSGHSDI-LLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGI--RLE 264 (395)
T ss_pred ---ecChhHcCC--CEEEEecccccCCCCCe-eEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHH--HHH
Confidence 111112344 554 78899885 44 6777777877655553222212223677776666655554432 233
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccC-C-CchhHHHHHHHHHH--cCceec-
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKT-A-LPVSAYDICLKMKE--RGILAK- 410 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~l~~--~Gv~~~- 410 (470)
+..+++..+.+.|++... .||... ....+.|.++.+++... . ....+.+|.+.|.- .++...
T Consensus 265 ~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~ 344 (395)
T PRK05967 265 HHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGG 344 (395)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCC
Confidence 334444444455544211 222110 11235688899988632 0 01245556655542 111110
Q ss_pred ------c------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 ------P------------THDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 ------~------------~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ ..++.+||+..+ |+.+.+++-|.++|+
T Consensus 345 ~~sLi~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~dLi~Dl~~Al~ 390 (395)
T PRK05967 345 YESLALHVKLGDRTVAKAPYAGPVIRLQIGL----EDVPDLKADLERGFA 390 (395)
T ss_pred cceeeeeCCCChhHhhhccCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 0 013579999555 566777777777766
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=158.59 Aligned_cols=291 Identities=15% Similarity=0.167 Sum_probs=176.4
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~~~ 192 (470)
..++...+|++.++++.|.+.+++++||+.|+.+++..+.. +|+ .||+....|.+ +...... -.....
T Consensus 66 ~~~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~---------~Gd-~Vv~~~~~y~~-t~~~~~~~l~~~Gi 134 (436)
T PRK07812 66 IMNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAG---------AGD-HIVSSPRLYGG-TYNLFHYTLPKLGI 134 (436)
T ss_pred CCCchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhC---------CCC-EEEEeCCcchH-HHHHHHHHhhcCeE
Confidence 34677889999999999999999999999999999976654 466 66666666543 3221110 000000
Q ss_pred ccCCCCCCCCeeeec-CCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 193 IRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~-~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.+..++ ..|++++++++++ ++++|++|.+.||+|.+.| +++|.++|++||+++|+|++|+.
T Consensus 135 ---------~v~~vdd~~d~e~l~~ai~~---~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~-- 196 (436)
T PRK07812 135 ---------EVSFVEDPDDLDAWRAAVRP---NTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT-- 196 (436)
T ss_pred ---------EEEEECCCCCHHHHHHhCCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc--
Confidence 122332 2378888888875 7899999999999999998 99999999999999999999872
Q ss_pred ccCCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHH------------------------------HhhcC-
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEV------------------------------MLCIQ- 316 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~------------------------------~~~~~- 316 (470)
+.......+| .|++ |++|.++| |- -+|+++. +..+ +...+
T Consensus 197 --~~~~~pl~~G--aDivv~S~tK~lgg~G~-~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (436)
T PRK07812 197 --PYLIRPLEHG--ADIVVHSATKYLGGHGT-AIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARV 271 (436)
T ss_pred --cccCCchhcC--CCEEEEecccccCCCCC-eEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHH
Confidence 1111111123 4654 77899984 32 3444443 2210 00000
Q ss_pred cCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EE-eccceeE
Q 012138 317 PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EV-RGRGLFN 382 (470)
Q Consensus 317 ~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~-~~~g~~~ 382 (470)
..........+|..++.+...|+.+ +-..++..+++..+.+.|++... .||.... .. .+.|.++
T Consensus 272 ~~~~~~G~~l~p~~a~l~~rgl~tL--~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~ 349 (436)
T PRK07812 272 QLLRDLGSAISPFNAFLIAQGLETL--SLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVL 349 (436)
T ss_pred HHHHhcCCCCCHHHHHHHhcCcCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEE
Confidence 0011112345666666665555443 33455566666667777766421 2221100 11 3568899
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHH
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----------~~-----------------~~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
.+++..+. ..+.+|.+.|.--.+..+ |. .++.|||++.+ |+.+++++
T Consensus 350 sf~l~~~~--~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGl----Ed~~dli~ 423 (436)
T PRK07812 350 SFELAGGV--EAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGI----EGIDDILA 423 (436)
T ss_pred EEEecCCH--HHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHH
Confidence 99885421 245566666542221111 11 15689999544 67788888
Q ss_pred HHHHHHhcccCC
Q 012138 436 ALHDVLELDLPK 447 (470)
Q Consensus 436 ~l~~~l~~~~~~ 447 (470)
-|.++|+ ..++
T Consensus 424 dl~~Al~-~~~~ 434 (436)
T PRK07812 424 DLEAGFA-AAKA 434 (436)
T ss_pred HHHHHHH-hhhc
Confidence 8888887 6543
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=154.68 Aligned_cols=326 Identities=18% Similarity=0.150 Sum_probs=192.9
Q ss_pred CCCHHHHHHHHHHHHHccccCC------CCCCCcHHHHHHHHhhhhCCCeEEec-CChhHHHHHHHHHHHHhchhcccCC
Q 012138 91 HCHPKIMKALQEQAEKLTLSSR------AFYNDKFPVFAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~v~~~-~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
|.+|.+.+++.+......+.+. ....+.+.++++++++++|.+.+.+. ++|+.+...++.+++.+. ..+|.
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~-~~~Gd- 158 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYH-EARGD- 158 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHh-hccCc-
Confidence 4678888888765221121111 01124467788899999998765444 566666655544433211 11110
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc-cC
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI-IP 242 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~-~~ 242 (470)
.++..|++.++.| ..........+..... .+...+ ..+ |+++|++++++ ++++|++.. .|++|.+ .+
T Consensus 159 ~~~~~Vlv~~~~h-p~~~~~~~~~G~~vv~---v~~~~~-~~~---D~e~L~~~i~~---~t~~V~v~~-Pn~tG~~~~d 226 (481)
T PRK04366 159 TKRTEVIVPDSAH-GTNPASAAMAGFKVVE---IPSNED-GLV---DLEALKAAVGE---DTAALMLTN-PNTLGLFERN 226 (481)
T ss_pred CCCCEEEEcCCcc-HhHHHHHHHcCCEEEE---eecCCC-CCc---CHHHHHhhccc---CCeEEEEeC-CCCccccchH
Confidence 0224677777764 4433333332221111 111111 112 89999998875 778877655 3489965 34
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec--ccccc-----CCCcceeEEEecHHHHhhc
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL--GKALG-----GGVIPVSAVLADKEVMLCI 315 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~--sK~l~-----gG~~~ig~v~~~~~~~~~~ 315 (470)
+++|.++|+++|+++++|++|. .+..|.. ....+| .|++++ .|.++ ||. .+|++.+++++.+.+
T Consensus 227 ----l~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp-~~G~l~~~~~~~~~l 297 (481)
T PRK04366 227 ----ILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGP-GSGPVGVKEELAPFL 297 (481)
T ss_pred ----HHHHHHHHHHcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCCCC-CeeeeeehhhhHhhC
Confidence 9999999999999999999986 1112211 122334 377644 48876 444 677888888877766
Q ss_pred CcCC-------------------ccCCCCCCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 316 QPGE-------------------HGSTFGGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 316 ~~~~-------------------~~~t~~~~~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
.... ....++++.+.+.++...+..+..+.+ .++...+.+++.++|.++ .. ...
T Consensus 298 p~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~---~~~ 373 (481)
T PRK04366 298 PVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YD---LPY 373 (481)
T ss_pred CCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-Cc---ccC
Confidence 3110 011122344555566666666655544 345566788999988876 21 111
Q ss_pred EEeccceeEEEEeccC---CCchhHHHHHHHHHHcCceecc----C-CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 374 EVRGRGLFNAVEFDKT---ALPVSAYDICLKMKERGILAKP----T-HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~---~~~~~~~~~~~~l~~~Gv~~~~----~-~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. ...+..+.++.. ..+.+..++.++|.++|+.+.. . ..+.+|+++...+|++|||++++.|.++.+ ++
T Consensus 374 --~-~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~-~~ 449 (481)
T PRK04366 374 --D-RPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAE-EA 449 (481)
T ss_pred --C-CCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHH-HH
Confidence 1 111111112211 0023678899999999998752 1 256899999999999999999999999988 76
Q ss_pred CC
Q 012138 446 PK 447 (470)
Q Consensus 446 ~~ 447 (470)
.+
T Consensus 450 ~~ 451 (481)
T PRK04366 450 KE 451 (481)
T ss_pred Hh
Confidence 55
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-15 Score=146.30 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=186.5
Q ss_pred cHHHHHHHHhhhhCCC--e--EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 118 KFPVFAERLTSMFGYD--M--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~--~--v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
...++.++++++++.+ . .+||+||||+|..++..++.+. +++ .|++.+.. |.+...+...-+.....
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~-------~~~-~ii~s~~~-H~Sv~ka~~~lg~~~~~ 136 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELF-------PDG-TLYYSKDT-HYSVSKIARLLRIKSRV 136 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhC-------CCc-EEEeCCCc-eehHHHHHHHcCCCCce
Confidence 3456677788888753 3 4899999999999998887641 233 55554444 66655544333322211
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC---cEEEEeccccCC
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN---ILMIADEIQSGL 270 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g---illI~Dev~~g~ 270 (470)
. +..+ ...+ |+++|++++++.+.++.+|++...++++|.+.| +++|.++|++|| +++++|.+|+|+
T Consensus 137 V---~~~~-~g~i---d~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~ 205 (380)
T PRK02769 137 I---TSLP-NGEI---DYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM 205 (380)
T ss_pred e---ccCC-CCcC---cHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce
Confidence 1 1111 1123 899999999875445888888888999999999 999999999998 699999999863
Q ss_pred ccc----CCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC-----CccCCCC--CCHHHHHHHHHH
Q 012138 271 ARS----GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFG--GNPLASAVAIAS 337 (470)
Q Consensus 271 g~~----G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~--~~~~~~aaa~a~ 337 (470)
-.. ...+.+.. ..|.++++ |.+++.. ++|+++.+++..+.+.+. ....++. -+....++..++
T Consensus 206 ~~p~~~~~~~~d~~~---~vDsis~s~HK~~~~P~-g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~a 281 (380)
T PRK02769 206 ILPFVNNPPPFSFAD---GIDSIAISGHKFIGSPM-PCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAA 281 (380)
T ss_pred eecccCccccCCccC---CCCEEEECCcccCCCCC-CcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHH
Confidence 211 11122221 35777776 7666566 999999988777665321 0111222 344567777788
Q ss_pred HHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-EeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC
Q 012138 338 LDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 338 l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
|+.+.. ++..++..++.+++.++|++.+ +.. ..+....+.+ ..+. .++. +|..+.+.
T Consensus 282 L~~lg~~G~~~~~~~~~~la~~l~~~L~~~g------~~~~~~p~~~~v~f--~~~~-----~~~~-----~~w~l~~~- 342 (380)
T PRK02769 282 IRSLGSKGLRQRVQHCLDMAQYAVDRLQANG------IPAWRNPNSITVVF--PCPS-----ERIW-----KKWHLATS- 342 (380)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHhCC------CEEEcCCCceEEEE--cCCC-----HHHH-----hCeeEccc-
Confidence 887766 4456677778888888886631 222 2333333333 3321 1222 56655554
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
.+.+|++....+++|.++++++.|.+.+. ...+.
T Consensus 343 ~~~~hi~~~~~~~~~~~~~f~~dl~~~~~-~~~~~ 376 (380)
T PRK02769 343 GNQAHIITMPHHNKQQIDSLIDELIFDLK-NPNKI 376 (380)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHh-ccccc
Confidence 45899998888999999999999998887 54443
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=160.08 Aligned_cols=288 Identities=16% Similarity=0.116 Sum_probs=169.8
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+|+++++++.|.+..++++||+.|+.+++. +.. +|+ .|++.++.|++.............
T Consensus 46 r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~---------pGd-~Vi~~~~~y~~t~~~~~~~~~~~g- 113 (380)
T PRK06176 46 RSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQ---------SGD-HVLLGDDVYGGTFRLFDKVLVKNG- 113 (380)
T ss_pred CCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcC---------CCC-EEEEcCCChhHHHHHHHHHHHhcC-
Confidence 34567789999999999998888999999999987664 333 565 677777777544321111100000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
..+..++..|++++++++++ ++++|++|.++||+|.+.+ +++|.++|++||+++|+|++|+.. .
T Consensus 114 --------i~v~~vd~~d~e~l~~ai~~---~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~ 177 (380)
T PRK06176 114 --------LSCTIIDTSDLSQIKKAIKP---NTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-Y 177 (380)
T ss_pred --------eEEEEcCCCCHHHHHHhcCc---CceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-c
Confidence 01233444589999998875 7899998888999999998 999999999999999999999832 1
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
.+... +...|++ +++|.++| |-.-.|+++. ++++.+.++..........+|..+......++.+. -..+
T Consensus 178 ~~~p~-----~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~--~R~~ 250 (380)
T PRK06176 178 YQNPL-----LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLG--LRME 250 (380)
T ss_pred cCCcc-----ccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHH--HHHH
Confidence 11111 2234665 56699975 3213455665 45666655432221112234554444433333221 1222
Q ss_pred HHHHHHHHHHHHHHHHH----hhCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHc--Cce-----
Q 012138 349 RSAHLGEELRQHLFKIQ----QQFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GIL----- 408 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~----~~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~----- 408 (470)
+..+....+.+.|++.. -.||... ....+.|.++.++++.. ....+|++.|.-- +..
T Consensus 251 ~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~---~~~~~f~~~l~~~~~~~s~G~~~ 327 (380)
T PRK06176 251 AHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND---SEAVAFVESLKLFILGESLGGVE 327 (380)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH---HHHHHHHHcCCcceEccCCCCCC
Confidence 23333334444444321 0111100 11235688899988632 2455666655321 111
Q ss_pred ---eccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 409 ---AKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 409 ---~~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
..|. .++.|||++.+ |+++++++-|+++|+
T Consensus 328 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~Al~ 377 (380)
T PRK06176 328 SLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI----EHEQDLLEDLEQAFA 377 (380)
T ss_pred ceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence 1111 15689999544 677888888888776
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=154.44 Aligned_cols=292 Identities=10% Similarity=0.013 Sum_probs=183.0
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
....++....|+++|+++.|.+.+++++||+.|+.+++..+.+ +|+ .||+....|.+........-.
T Consensus 57 sR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~---------~GD-~Vv~~~~~Yg~t~~l~~~~l~--- 123 (395)
T PRK08114 57 GRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVE---------QGD-HVLMTGTAYEPTQDFCSKILS--- 123 (395)
T ss_pred cCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcC---------CCC-EEEEeCCCcHHHHHHHHHHHH---
Confidence 3346788899999999999999999999999999998886654 566 566666665443322110000
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC--cEEEEeccccC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSG 269 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g--illI~Dev~~g 269 (470)
.+...+..++..|.+++++++++ ++++|++|.+.||+|.+.| +++|.++|+++| +++++|.+++
T Consensus 124 ------~~Gi~v~~vd~~d~~~l~~~l~~---~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a- 189 (395)
T PRK08114 124 ------KLGVTTTWFDPLIGADIAKLIQP---NTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA- 189 (395)
T ss_pred ------hcCcEEEEECCCCHHHHHHhcCC---CceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc-
Confidence 00112345555688999999976 7899999999999999999 999999999985 9999999997
Q ss_pred CcccCCccccccCCCCccee--eccccccCC--CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGGG--VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG--~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~ 345 (470)
++.. ++......|++ +..|.++|. . -.|.++.+++..+.+........-..+|..+..+...|+.+. -
T Consensus 190 ---~p~~--~~pl~~GaDivv~S~tKyl~Ghsdv-~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--l 261 (395)
T PRK08114 190 ---AGVL--FKALDFGIDISIQAGTKYLVGHSDA-MIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLG--V 261 (395)
T ss_pred ---cccc--cCHHHcCCcEEEEcCcccccCCCcc-eeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHH--H
Confidence 2222 23223334666 566988853 4 667677777765555422111222467777776655554432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCce--
Q 012138 346 LAERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGIL-- 408 (470)
Q Consensus 346 ~~~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~-- 408 (470)
..++..+++..+.+.|++... .||... ....+.|.++.+++..........+|++.|.- .++.
T Consensus 262 R~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlG 341 (395)
T PRK08114 262 RLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWG 341 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccC
Confidence 334444555555555554321 222110 11235688999988631001244556555532 1111
Q ss_pred -----ec---c-------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 409 -----AK---P-------------THDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 409 -----~~---~-------------~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+. | -.++.|||++.+ |+++.+++-|.++|+
T Consensus 342 g~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~ 392 (395)
T PRK08114 342 GFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFA 392 (395)
T ss_pred CccceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 11 0 013689999554 567777777777776
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=138.92 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=177.8
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-
Q 012138 131 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG- 209 (470)
Q Consensus 131 ~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 209 (470)
..|.+....|..|.+.+.++.... ||+++|+.+.|+|...+..+. +.... ++.+|.+
T Consensus 85 t~dnic~GvGsDE~ID~iiR~~c~---------PGkeKIl~cPPtysMY~v~A~-iNd~e------------Vvkvpl~p 142 (375)
T KOG0633|consen 85 TSDNICVGVGSDELIDLIIRCVCD---------PGKEKILDCPPTYSMYVVDAA-INDAE------------VVKVPLNP 142 (375)
T ss_pred CccceEEecCcHHHHHHHHhheec---------CCccceeecCCcceeEEEEee-cCCce------------EEEecCCC
Confidence 356788888999999999998877 788899999999865544432 11111 2222221
Q ss_pred ----CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC
Q 012138 210 ----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285 (470)
Q Consensus 210 ----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~ 285 (470)
|.+++-+.++.. ..++++++.++.||+|.+. +.+.+.+|.+.-. +.++++||+|..|.-.+.. ...-.--
T Consensus 143 dF~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p~--nglVVvDEAYidFsg~~S~--~~lV~kY 216 (375)
T KOG0633|consen 143 DFSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSII-KEDDILKILEMPD--NGLVVVDEAYIDFSGVESR--MKLVKKY 216 (375)
T ss_pred CccccHHHHHHHHhcc-ccceEEEEcCCCCCCcccc-cHHHHHHHHhCCC--CcEEEEeeeeEeecccccc--chHhHhC
Confidence 678888877642 3688888666699999999 7777887777665 7899999999987322211 1111113
Q ss_pred ccee---ecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH--Hhh-hhHHHHHHHHHHHHH
Q 012138 286 PDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV--IRD-EKLAERSAHLGEELR 358 (470)
Q Consensus 286 pdi~---s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~~~-~~~~~~~~~~~~~l~ 358 (470)
|+++ +|||++| .|+ |+|+...+.++++.+... -..|+.+.++..+|++++.- +.. +..++.+.+-+.+|.
T Consensus 217 pNLivlqTlSKsfGLAGi-RvG~~~~~~~ia~iln~~--KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~ 293 (375)
T KOG0633|consen 217 PNLIVLQTLSKSFGLAGI-RVGYGAFPLSIAEILNRA--KAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLF 293 (375)
T ss_pred CceeehhhhhhhcCccee-EeecccccHHHHHHHHhc--cCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 4443 8999999 898 999999999998887643 34555566666666666641 111 334444444444444
Q ss_pred HHHHHHHhhCCCceEEE--eccceeEEEEeccCCCchhHHHHHHHH-HHcCceecc-----CCCCEEEEecCCCCCHHHH
Q 012138 359 QHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDICLKM-KERGILAKP-----THDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~-----~~~~~iR~~~~~~~t~e~i 430 (470)
..|.++ +++... .....|+.+++..... .-+..+..++ -+.||.++- +-.+++|++ .-|+||-
T Consensus 294 keLt~v-----~~~~~~~gg~daNFiLi~v~~~~n-~~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~Een 364 (375)
T KOG0633|consen 294 KELTEV-----PFLNDYPGGSDANFILIEVTGGDN-GMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEEN 364 (375)
T ss_pred HHhhcC-----ccccCCCCcccccEEEEEEcCCCc-HHHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccc
Confidence 445443 233322 2345678887754331 2344444444 455999863 347899999 5688889
Q ss_pred HHHHHHHHHHH
Q 012138 431 QEGSKALHDVL 441 (470)
Q Consensus 431 ~~~~~~l~~~l 441 (470)
..+++.|++++
T Consensus 365 tvL~k~~K~~l 375 (375)
T KOG0633|consen 365 TVLMKCLKQFL 375 (375)
T ss_pred hHHHHHHHhhC
Confidence 99999888763
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=156.98 Aligned_cols=285 Identities=13% Similarity=0.133 Sum_probs=173.6
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...+|++.++++.|.+..+++++|+.|+..++. +.. +|+ .|++..+.|.+.............
T Consensus 47 ~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~---------~Gd-~Viv~~~~y~~~~~~~~~~~~~~G-- 113 (377)
T PRK07671 47 TGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFS---------SGD-HVILTDDVYGGTYRVMTKVLNRFG-- 113 (377)
T ss_pred CCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhC---------CCC-EEEECCCccchHHHHHHHHHhcCC--
Confidence 4567789999999999998888889999988876653 332 465 677777887543221111100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+..++..|++++++++++ ++++|+++.++||+|.+.+ +++|.++|+++|+++|+||+|... ..
T Consensus 114 -------~~v~~v~~~d~~~l~~ai~~---~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~~-~~ 178 (377)
T PRK07671 114 -------IEHTFVDTSNLEEVEEAIRP---NTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMTP-YW 178 (377)
T ss_pred -------eEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCcc-cc
Confidence 11244555589999999875 7899998888999999998 999999999999999999998731 11
Q ss_pred CCccccccCCCCccee--eccccccCC--CcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGGG--VIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~gG--~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
+... + ++ .|++ +++|.++|. . -.|++++ ++++++.+........-..++..+..+...++.+.. .++
T Consensus 179 ~~p~--~-~g--~Divv~S~sK~l~G~~~~-~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~--R~~ 250 (377)
T PRK07671 179 QSPI--S-LG--ADIVLHSATKYLGGHSDV-VAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI--RME 250 (377)
T ss_pred CChh--h-hC--CeEEEecCcccccCCccc-eeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHH--HHH
Confidence 1211 1 22 3554 778999842 2 2444554 567777665333222233566666666555444332 334
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCcee----
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA---- 409 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~---- 409 (470)
+..++...+.+.|++... .||..- ....+.|.++.+++. .. ....+|.+.|.- .++..
T Consensus 251 ~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~--~~~~~f~~~l~l~~~~~s~G~~~ 327 (377)
T PRK07671 251 EHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG-SE--ETANKVLERLQYFTLAESLGAVE 327 (377)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC-CH--HHHHHHHHhCCcceEccCCCCCC
Confidence 444555555555554211 122100 012356888889883 21 245566665531 12111
Q ss_pred ----ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 410 ----KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 410 ----~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.|. .++.|||++.+ |+.+.+++-|+++|
T Consensus 328 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al 376 (377)
T PRK07671 328 SLISIPSQMTHASIPADRRKELGITDGLIRISVGI----EDGEDLIEDLAQAL 376 (377)
T ss_pred eEeECCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHh
Confidence 111 15689999554 56777777777765
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-16 Score=152.57 Aligned_cols=308 Identities=14% Similarity=0.075 Sum_probs=186.7
Q ss_pred CCHH-HHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecC-ChhHHHHHHHHHHHHhchhcccCCCCC
Q 012138 92 CHPK-IMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMN-TGAEGVETALKLARKWGYVKKKFSIDE 166 (470)
Q Consensus 92 ~~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~-sGteA~~~al~~~~~~~~~~~~~~~g~ 166 (470)
.+|+ |++++.+..-...+... -......+..+.++++++. ++|+|+. |||++++.++..+.. +++
T Consensus 23 ~~~~~v~~a~~~~~~~~~hr~~-~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~---------~~~ 92 (378)
T PRK03080 23 KRPGWQLEALADALLGRSHRQK-PVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLG---------ARR 92 (378)
T ss_pred CChHHHHHHHHhhhcccCcCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCC---------CCc
Confidence 4577 88888754321112111 1234556777888888874 2577775 999999999986632 223
Q ss_pred cEEEEEccCccccccch-h-cccCCcccccCCCCCCCCeeeecCC---CHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 167 AIIVSCCGCFHGRTLAA-I-SMSCDNEAIRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
..++ ..+. ||..... + ...+.. ... ....+++ |+++++ .++.|.+..+.+.+|.+.
T Consensus 93 ~~vi-~~g~-f~~~~~~~~~~~~g~~--~v~-------~~~~~~g~~~d~~~i~--------~~~~V~~~h~~t~tG~~~ 153 (378)
T PRK03080 93 VDHL-AWES-FGSKWATDVVKQLKLE--DPR-------VLEADYGSLPDLSAVD--------FDRDVVFTWNGTTTGVRV 153 (378)
T ss_pred ceEE-EeCH-HHHHHHHHHHhhcCCC--Cce-------EeccCCCCCCCHhhcC--------CCCCEEEEecCCccceec
Confidence 2343 3454 5543332 1 111110 000 0111111 445432 134577777788999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCC
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE 319 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~ 319 (470)
| +++|.+ ++||+++++|.+|+ +| ...+..+ + .|++++| |++++.. .+|+++.+++..+.+.+..
T Consensus 154 p----i~~I~~--~~~g~~~vVDa~qs-~G--~~pidv~--~--iD~~~~s~~K~l~~P~-G~g~l~v~~~~~~~~~p~~ 219 (378)
T PRK03080 154 P----VARWIG--ADREGLTICDATSA-AF--ALPLDWS--K--LDVYTFSWQKVLGGEG-GHGMAILSPRAVERLESYT 219 (378)
T ss_pred c----chhhcc--ccCCCeEEEecccc-cc--cCCCCHH--H--CcEEEEehhhhCCCCC-ceEEEEECHHHHHhhhccc
Confidence 8 999988 88999999999998 22 1122222 2 3777665 9988765 7899999999887765421
Q ss_pred c----------------------cCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 320 H----------------------GSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 320 ~----------------------~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
. ..++ +.+..+..++.++|+.+.+ +.+.++.+++.+++++.|+++.... .+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~--~~ 297 (378)
T PRK03080 220 PARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWAT--PL 297 (378)
T ss_pred CCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcc--cc
Confidence 0 1122 2444555566778888765 3455667777778888777653210 11
Q ss_pred E-EEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 373 K-EVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 373 ~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
. ... ..+.++.+.++... .....++...|.++|+.+..+. .+.+|+++...+|++||+.+++.|+++++ +++
T Consensus 298 ~~~~~~~s~~i~~~~~~~~~-~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~-~~~ 375 (378)
T PRK03080 298 VADPATRSNTSVTLDFVDAQ-AAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE-RLK 375 (378)
T ss_pred cCCccccCccEEEEEcCCch-HHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH-HHh
Confidence 1 011 12345666544310 0023356777777888876432 47899999999999999999999999988 654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=152.96 Aligned_cols=285 Identities=20% Similarity=0.189 Sum_probs=172.6
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++....+++.|+++.+.+.++.++||..|+.+++..+.+ +|+ .|+.....|++..........
T Consensus 51 R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~---------~Gd-~iv~~~~~Y~~t~~~~~~~l~---- 116 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLK---------PGD-HIVASDDLYGGTYRLLEELLP---- 116 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS----------TTB-EEEEESSSSHHHHHHHHHCHH----
T ss_pred ccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcc---------cCC-ceEecCCccCcchhhhhhhhc----
Confidence 345777899999999999999999999999999999887765 465 788888888664322111110
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC-cEEEEeccccCCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-ILMIADEIQSGLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g-illI~Dev~~g~g 271 (470)
.+...+.+++..|+++|++++++ ++++|++|++.||+..+.+ +++|.++|+++| +++|+|...+..
T Consensus 117 -----~~gv~v~~~d~~d~~~l~~~l~~---~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp- 183 (386)
T PF01053_consen 117 -----RFGVEVTFVDPTDLEALEAALRP---NTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP- 183 (386)
T ss_dssp -----HTTSEEEEESTTSHHHHHHHHCT---TEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT-
T ss_pred -----ccCcEEEEeCchhHHHHHhhccc---cceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccce-
Confidence 00112345656689999999987 8999999999999999998 999999999998 999999997621
Q ss_pred ccCCccccccCCCCccee--eccccccC-CCcceeEEEec--HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD--KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~--~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
+.+..+....|++ |.+|.++| |=.-.|+++.+ +++.+.++..........+|..+......|+.+ .-.
T Consensus 184 -----~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R 256 (386)
T PF01053_consen 184 -----YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLR 256 (386)
T ss_dssp -----TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHH
T ss_pred -----eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHH
Confidence 1122222224665 78899984 22145666654 467665543222112234566666555444433 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHc--C
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKER--G 406 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--G 406 (470)
.++..+++..+.+.|++. | .+..+ .+.|.++.+++.... .....|.+.|.-- |
T Consensus 257 ~~~~~~nA~~lA~~L~~h----p-~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~--~~~~~f~~~l~l~~~~ 329 (386)
T PF01053_consen 257 MERQNENAEALAEFLEEH----P-KVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE--EAARRFLDALKLFSIA 329 (386)
T ss_dssp HHHHHHHHHHHHHHHHTS----T-TEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH--HHHHHHHHH-SSSEES
T ss_pred HHHHHHHHHHHHHHHHhC----C-CCCeEEEcccccccceeeeeecccccCceeEEEeccch--hhhHhHHhhhhhHhhh
Confidence 445555555565655552 2 23322 255678888887531 1455666665321 1
Q ss_pred cee--------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 407 ILA--------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 407 v~~--------~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
... .|. .++.||++..+ |+.+++++.|+++|+
T Consensus 330 ~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 330 PSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADLEQALE 386 (386)
T ss_dssp SS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred hhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHHHHhcC
Confidence 111 111 15789999554 678888888888764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-14 Score=129.36 Aligned_cols=306 Identities=16% Similarity=0.168 Sum_probs=198.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC
Q 012138 87 VNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166 (470)
Q Consensus 87 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~ 166 (470)
.++||.+|++.+-+.+.++...+. -+....--.++..+|+.+.+.|+..+.. |||
T Consensus 39 ~~lgh~sPe~~qIm~~v~egikyV----------------FkT~n~~tf~isgsGh~g~E~al~N~le---------Pgd 93 (385)
T KOG2862|consen 39 PSLGHMSPEFVQIMDEVLEGIKYV----------------FKTANAQTFVISGSGHSGWEAALVNLLE---------PGD 93 (385)
T ss_pred CccccCCHHHHHHHHHHHHHHHHH----------------hccCCCceEEEecCCcchHHHHHHhhcC---------CCC
Confidence 456777777776666555432211 0111223467788899999999998776 788
Q ss_pred cEEEEEccCccccccch-hcccCCcccccCCCCCCCCeeeecCC---CHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 167 AIIVSCCGCFHGRTLAA-ISMSCDNEAIRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
..+++..+.|.-+.... ..++.+ . +++..+.. .++.+++++.+| ++++|++....+.||+..|
T Consensus 94 ~vLv~~~G~wg~ra~D~~~r~ga~----V-------~~v~~~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~ 160 (385)
T KOG2862|consen 94 NVLVVSTGTWGQRAADCARRYGAE----V-------DVVEADIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVLQD 160 (385)
T ss_pred eEEEEEechHHHHHHHHHHhhCce----e-------eEEecCcccCccHHHHHHHHHhc--CCceEEEEecCccccccch
Confidence 66666766652221111 111111 0 01111111 689999999997 7788888777888999875
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCc--
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH-- 320 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~-- 320 (470)
.++.+.++|++|++++++|-|-+ -.|..|.++.|+++.-..---|++++.- .++.+..++...++++....
T Consensus 161 ---~~~~~g~lc~k~~~lllVD~VaS---lggt~F~mDewgVDvaytgSQKaL~aP~-GLsiisfS~ka~~~~~~rK~~~ 233 (385)
T KOG2862|consen 161 ---LLAISGELCHKHEALLLVDTVAS---LGGTEFEMDEWGVDVAYTGSQKALGAPA-GLSIISFSDKALEAIRDRKTKP 233 (385)
T ss_pred ---HHHHHHHHhhcCCeEEEEechhh---cCCccceehhhcccEEEecchhhcCCCC-CcceeecCHHHHHHHhhccCCc
Confidence 24666789999999999999987 3455677888888422223349999544 55667888877776653211
Q ss_pred ---------------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-E
Q 012138 321 ---------------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-V 375 (470)
Q Consensus 321 ---------------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~-~ 375 (470)
...++.+........++|..+.+ ++..++-++++++++..|++++.+. ++.. .
T Consensus 234 ~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~--fv~~e~ 311 (385)
T KOG2862|consen 234 VSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQL--FVVDEE 311 (385)
T ss_pred eEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--eecChh
Confidence 11223555566777788887766 5566777888999999999976542 1111 1
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHc-Cceecc----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKP----THDTIVRLTP-PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~----~~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~ 442 (470)
........+.++. +.+..+++.++..+ ++.+.. ..+.++||.. ....+.|.|+..++.|+.++.
T Consensus 312 ~rlptvttv~vp~---gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq 381 (385)
T KOG2862|consen 312 LRLPTVTTVKVPY---GVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQ 381 (385)
T ss_pred hccCcceeeecCC---CCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHh
Confidence 1222233343333 34888999999999 555543 3478999964 345688999999999999987
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=146.99 Aligned_cols=309 Identities=10% Similarity=0.052 Sum_probs=192.2
Q ss_pred CCHHHHHHHHHHHHHccc---cC---CCCC---CCcHHHHHHHHhhhhCC-C--e-EEecCChhHHHHHHHHHHHHhchh
Q 012138 92 CHPKIMKALQEQAEKLTL---SS---RAFY---NDKFPVFAERLTSMFGY-D--M-VLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~---~~---~~~~---~~~~~~l~~~l~~~~~~-~--~-v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
.+++|++++...+..+.. +. .... .+...++.+.++++++. + . +++++||+.|+|+++..+..
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~---- 89 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG---- 89 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC----
Confidence 579999999988754310 00 0011 24566778888888874 2 3 55668899999999987754
Q ss_pred cccCCCCCcEEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHH-HHHhcCCCeEEEEEccccCC
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK-IFKESGDQIAGFLFEPIQGE 236 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~-~l~~~~~~~~~vi~epi~n~ 236 (470)
++++..++..+.| |.... .....+.... . ...+. ....+..++++ .+++ ++++|.+...-+.
T Consensus 90 -----~g~~~l~i~~G~f-g~r~~~~a~~~g~~~~-~---~~~~~---~g~~~~~~~~~~~l~~---~~~~V~~th~eTs 153 (360)
T PRK05355 90 -----GGKKADYVDTGSW-SKKAIKEAKKYGEVNV-A---ASSED---DGFTYIPPLDEWQLSD---DAAYVHYTSNETI 153 (360)
T ss_pred -----CCCeEEEEECCHH-HHHHHHHHHHhCCceE-E---ecccc---cCCCCCCChhhccCCC---CCCEEEEccCCCc
Confidence 4554555555554 32221 1111111100 0 00000 00113334444 5544 6788888887888
Q ss_pred CccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhh
Q 012138 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLC 314 (470)
Q Consensus 237 ~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~ 314 (470)
||...|+ +++| ||+++|+|.+|+ +| +..+..+.+ |++++| |.++ .. .+|.+++++++.+.
T Consensus 154 tGv~~~~---i~~i------~g~l~vVDavss-~g--~~~idv~~~----d~~~~ssqK~lg-P~-Glg~l~~s~~~l~~ 215 (360)
T PRK05355 154 DGTEFHE---LPDT------GDVPLVADMSSD-IL--SRPIDVSKF----GLIYAGAQKNIG-PA-GLTIVIVREDLLGR 215 (360)
T ss_pred ceEecCc---cccc------CCCcEEEEcCcc-cc--CccCCHHHc----cEEEEecccccc-CC-ceEEEEECHHHHhh
Confidence 9999831 5555 899999999998 21 222223333 466555 9886 33 68999999999887
Q ss_pred cCcC-----------Ccc-CCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 315 IQPG-----------EHG-STFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 315 ~~~~-----------~~~-~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
+.+. ... ..+++|.....+..++|+++.++ ++.++.+++.+++++.|+++.. +......-...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~-~~~~~~~~~rs 294 (360)
T PRK05355 216 ALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDF-YRNPVAPEDRS 294 (360)
T ss_pred cccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC-cccCCChhhcC
Confidence 7652 111 12457777888888999988764 5666777788888888877641 10001000112
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+....+.++.. ....++.+.+.++|+.+.++. .+.+|+++...+|.|||+++++.|+++++
T Consensus 295 ~~v~sf~~~~~---~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 295 RMNVPFTLADE---ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred CcEEEEEcCCh---HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 24455544432 134567788889999986553 47899999999999999999999999876
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-15 Score=143.46 Aligned_cols=308 Identities=12% Similarity=0.080 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHHHHHccccCCCC------CC---CcHHHHHHHHhhhhCC-C--eEEec-CChhHHHHHHHHHHHHhchh
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF------YN---DKFPVFAERLTSMFGY-D--MVLPM-NTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~------~~---~~~~~l~~~l~~~~~~-~--~v~~~-~sGteA~~~al~~~~~~~~~ 158 (470)
.|..|++++.+.+..+.....+. .. +..+++.+.+.++++. + .|+++ +|||+|+++++..+..
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~---- 78 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA---- 78 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC----
Confidence 45688899988887544111111 11 3456677788888874 2 46666 5599999999987654
Q ss_pred cccCCCCCcEEEEEccCccccccch-hcccCCcccccCCCCCCCCeeeecCC---CHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEAIRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
++++..++..+.| |....- ....+.... .... ...++. ++++++ ++ .++++|.+...-
T Consensus 79 -----~~~~~l~i~~G~f-g~r~~~~a~~~g~~~~-~~~~------~~~~~~~~~~~~~~~--~~---~~~~~v~~th~E 140 (349)
T TIGR01364 79 -----EGKVADYIVTGAW-SKKAAKEAKKYGVVNV-VASG------KEGNYTKIPDPSTWE--IS---EDAAYVHYCANE 140 (349)
T ss_pred -----CCCeEEEEECCHH-HHHHHHHHHHhCCcEE-Eecc------ccCCCCCCCCHHhcC--CC---CCCCEEEEcCCC
Confidence 4554444455554 332211 111111000 0000 001122 444443 12 267888888878
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHH
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVM 312 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~ 312 (470)
+.||...+ ++++.+++++++|.+++ + .+.....+.+ |++++| |.++ .. .+|.+++++++.
T Consensus 141 TstGv~~~---------~l~~~~~~l~iVDavss-~--g~~~id~~~~----d~~~~ssqK~lg-P~-Glg~l~~s~~~~ 202 (349)
T TIGR01364 141 TIHGVEFR---------ELPDVKNAPLVADMSSN-I--LSRPIDVSKF----GLIYAGAQKNIG-PA-GLTVVIVRKDLL 202 (349)
T ss_pred CcccEecc---------eecccCCCeEEEEcccc-c--cCccCCHHHc----cEEEEecccccC-CC-ceEEEEECHHHH
Confidence 88999874 67788999999999998 2 1222223332 355554 9886 33 689999999988
Q ss_pred hhcCcCC-----------ccCC-CCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 313 LCIQPGE-----------HGST-FGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 313 ~~~~~~~-----------~~~t-~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+.+.+.. ...+ +++|.....+..++|+++.+ +++.++.+++.+++++.|+++..-+........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~ 282 (349)
T TIGR01364 203 GRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRN 282 (349)
T ss_pred hhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHH
Confidence 7664421 1222 35677788888889998765 346666677777788777776311100010001
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.......+.++... ...++.+.+.++|+.+.++. .+.+|+++...+|+|||+.+++.|+++++
T Consensus 283 rs~~v~sf~~~~~~---~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 283 RSRMNVVFTLGNEE---LEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred cCCeEEEEecCChh---HhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 12244555444321 23567678889999666664 47899999999999999999999999776
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=141.33 Aligned_cols=164 Identities=21% Similarity=0.240 Sum_probs=122.5
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
....++....|+++++.+-|--..+.+.||..|+..|+..+.. +|| .||+-..-| |.+......+-
T Consensus 57 sRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~---------aGD-~iVss~~LY-GGT~~lf~~tl--- 122 (426)
T COG2873 57 TRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAG---------AGD-NIVSSSKLY-GGTYNLFSHTL--- 122 (426)
T ss_pred eeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhcc---------CCC-eeEeecccc-CchHHHHHHHH---
Confidence 3355777899999999988777788899999999999997765 566 677766555 33333322221
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
..+.-++.++.-+|++.++++|++ +|++|++|.+.||.+.+.+ +++|.++|++||+++|+|...+.
T Consensus 123 -----~~~Gi~v~fvd~~d~~~~~~aI~~---nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~at-- 188 (426)
T COG2873 123 -----KRLGIEVRFVDPDDPENFEAAIDE---NTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFAT-- 188 (426)
T ss_pred -----HhcCcEEEEeCCCCHHHHHHHhCc---ccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCc--
Confidence 111123566767789999999998 8999999999999999998 99999999999999999998762
Q ss_pred ccCCccccccCCCCccee--eccccccC-CCcceeEEEec
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD 308 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~ 308 (470)
. +-+.......|++ |++|.++| |- .+|.++..
T Consensus 189 --p--yl~rP~~hGADIVvHS~TK~igGhGt-~iGG~iVD 223 (426)
T COG2873 189 --P--YLCRPIEHGADIVVHSATKYIGGHGT-AIGGVIVD 223 (426)
T ss_pred --c--eecchhhcCCCEEEEeecccccCCcc-ccceEEEe
Confidence 1 1133333345776 78899986 65 77777754
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=151.38 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=172.6
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++...++++.++++.|.+..++++||++|+.+++..+.. +|+ .||+....|.+........-...+
T Consensus 66 ~~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll~---------~Gd-~VI~~~~~y~~t~~~~~~~l~~~G-- 133 (437)
T PRK05613 66 LTNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAG---------AGD-HIVTSPRLYGGTETLFLVTLNRLG-- 133 (437)
T ss_pred ccChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcC---------CCC-EEEECCCccHHHHHHHHHHHHhcC--
Confidence 45677899999999999988899999999999988876543 466 666666675443111100000000
Q ss_pred cCCCCCCCCeeeec-CCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 194 RGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 194 ~~~~~~~~~~~~~~-~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
..+..++ .+|++++++++++ ++++|++|.+.||+|.+.| +++|.++|+++|+++|+|.+|+.
T Consensus 134 -------i~v~~vd~~~d~e~l~~~l~~---~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a~--- 196 (437)
T PRK05613 134 -------IEVTFVENPDDPESWQAAVQP---NTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIAT--- 196 (437)
T ss_pred -------eEEEEECCCCCHHHHHHhCCc---cCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCcc---
Confidence 1123332 2378999998876 7889999888999999998 99999999999999999999862
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHHH------------------------------------
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVM------------------------------------ 312 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~~------------------------------------ 312 (470)
|.......+|. |++ ++.|.++| |- .+|.+++ +.+..
T Consensus 197 -g~~~~p~~~Ga--Divv~S~~K~l~G~gd-~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (437)
T PRK05613 197 -AALVRPLELGA--DVVVASLTKFYTGNGS-GLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGL 272 (437)
T ss_pred -ccccChHHhCC--CEEEeeccceecCCCc-ceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHH
Confidence 21111112343 666 55598886 43 4444443 32210
Q ss_pred hhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------E-Eecc
Q 012138 313 LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------E-VRGR 378 (470)
Q Consensus 313 ~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~-~~~~ 378 (470)
+.............+|..+..+...|+.+. -..++..+++..+.+.|++... .||.... . ..+.
T Consensus 273 ~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~ 350 (437)
T PRK05613 273 KARAGLLRDTGATLSPFNAWVTAQGLDTLS--LRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYT 350 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCC
Confidence 000000112233467777776665555442 2344555556666666665321 2221110 1 1245
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceec----------cC-----------------CCCEEEEecCCCCCHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAK----------PT-----------------HDTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----------~~-----------------~~~~iR~~~~~~~t~e~i~ 431 (470)
|.++.+++.... ..+..|++.|.--.+..+ |. .++.|||++.+ |+.+
T Consensus 351 gg~~sf~l~~~~--~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~~liRlsvGl----E~~~ 424 (437)
T PRK05613 351 GSVLSFDIKGGK--DEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQATVRLSVGI----EDID 424 (437)
T ss_pred ceEEEEEecCCH--HHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCCCeEEEEecc----CCHH
Confidence 788999885321 245566665542211111 11 15789999554 6777
Q ss_pred HHHHHHHHHHh
Q 012138 432 EGSKALHDVLE 442 (470)
Q Consensus 432 ~~~~~l~~~l~ 442 (470)
++++.|.++|+
T Consensus 425 dLi~Dl~~Al~ 435 (437)
T PRK05613 425 DIIADLEGGFA 435 (437)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-14 Score=140.84 Aligned_cols=313 Identities=17% Similarity=0.176 Sum_probs=188.4
Q ss_pred CCHHHHHHHHHHHHHccccCC----CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSR----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
-++++.+++.+.+..+..... ....+....+++.+++++|.+.+++++||+.|+..++..+ . +|+
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l-~---------~Gd- 166 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNAL-A---------AGK- 166 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHh-C---------CCC-
Confidence 458899999998876531100 0112335688999999999999999999999999888643 2 466
Q ss_pred EEEEEccC-cc-ccccc---hhcccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHhcCCCeEEEEEccccCC--C
Q 012138 168 IIVSCCGC-FH-GRTLA---AISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGE--A 237 (470)
Q Consensus 168 ~ii~~~~~-yh-g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~~~~~~~~vi~epi~n~--~ 237 (470)
.||+.+.. |+ |.... .+...+.. ...+++ .+++++++++++ +|++|+++...|+ +
T Consensus 167 eVIvs~~e~~~~ggs~~i~~~~~~~G~~------------l~~v~~~~~t~~~dle~aI~~---~TklV~~vh~sN~~i~ 231 (464)
T PRK04311 167 EVIVSRGELVEIGGAFRIPDVMRQAGAR------------LVEVGTTNRTHLRDYEQAINE---NTALLLKVHTSNYRIE 231 (464)
T ss_pred EEEEcchhhhhcCcchhhHHHHHHCCcE------------EEEECCCCCCCHHHHHHhcCc---cCeEEEEEcCCCcccc
Confidence 45554442 32 22111 11111111 122222 268899999976 7899998877776 3
Q ss_pred c--cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC------CccccccCCCCcceeecc--ccccCCCcceeEEEe
Q 012138 238 G--VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG------RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA 307 (470)
Q Consensus 238 G--~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G------~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~ 307 (470)
| ...| +++|.++|++||+++|+|...+-++..+ .....+......|+++|| |.++|. ..|++++
T Consensus 232 G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g 305 (464)
T PRK04311 232 GFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVG 305 (464)
T ss_pred ccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEE
Confidence 4 5666 9999999999999999999543222111 111111122346898887 888765 5788889
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhH------------HHHHHHHHHHHHHHHHHHHhhCCCc-e
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKL------------AERSAHLGEELRQHLFKIQQQFPNY-V 372 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~------------~~~~~~~~~~l~~~L~~l~~~~p~~-~ 372 (470)
++++++.++.......+...-...++..++|....+ +.+ .++.++++..+.+.|+..... .. +
T Consensus 306 ~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~--~~~~ 383 (464)
T PRK04311 306 KKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGA--AFAV 383 (464)
T ss_pred cHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCC--CeeE
Confidence 999998876433333333344555555555553321 111 144455566666666553210 01 1
Q ss_pred EEEe-----cccee-------EEEEeccCCCchhHHHHHHHHHHc--CceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 373 KEVR-----GRGLF-------NAVEFDKTALPVSAYDICLKMKER--GILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 373 ~~~~-----~~g~~-------~~~~~~~~~~~~~~~~~~~~l~~~--Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
..+. |.|.+ +.+.+... +.++.++.++|++- .|+.. ...+.+.+-+ ....++|++.++++|.
T Consensus 384 ~~~~~~~~~gggs~p~~~~~~~~v~~~~~--~~~~~~l~~~lr~~~~~i~~r-~~~~~~~ld~-r~~~~~~~~~~~~~~~ 459 (464)
T PRK04311 384 EVVPSFSQVGGGSLPVDRLPSAAVTLTPK--DRSLEALAARLRLLPPPVIGR-IEDGRLLLDL-RTLEEEDEERLAAALL 459 (464)
T ss_pred EEEEccCccCCCCCcCCCCCeEEEEEeCC--CCCHHHHHHHHhcCCCCEEEE-EECCEEEEEe-CcCCHHHHHHHHHHHH
Confidence 1111 11221 22333322 23678899999875 45554 3466677765 4678899999999999
Q ss_pred HHHh
Q 012138 439 DVLE 442 (470)
Q Consensus 439 ~~l~ 442 (470)
+++.
T Consensus 460 ~~~~ 463 (464)
T PRK04311 460 EALN 463 (464)
T ss_pred HHhh
Confidence 8875
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=146.97 Aligned_cols=309 Identities=14% Similarity=0.135 Sum_probs=184.7
Q ss_pred CCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhhCC--C-eEEec-CChhHHHHHHHHHHHHhchhcccCCC
Q 012138 92 CHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFGY--D-MVLPM-NTGAEGVETALKLARKWGYVKKKFSI 164 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~--~-~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~ 164 (470)
-+|+|++++....... .+... -..+...+..+.++++++. + +|+|+ +|||.++++++..+..
T Consensus 14 ~~~~v~~a~~~~~~~~~~~~hr~~-~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~---------- 82 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFGTSHRQA-PVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE---------- 82 (361)
T ss_pred CCHHHHHHHHhcCccccccCcCCh-HHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc----------
Confidence 5688999876542111 11111 1234566778888888875 2 57775 7799999999976532
Q ss_pred CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCCh
Q 012138 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244 (470)
Q Consensus 165 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~ 244 (470)
++ .+++..+.| |....-.+... +.. .. ......+. .+.++..+. +++++|.+....|.+|.+.|
T Consensus 83 ~~-~l~i~~G~~-~~~~~~~a~~~-~~~----~~--~~~~~~~~--~~~~~~~~~---~~~~lV~~~h~et~tG~~~p-- 146 (361)
T TIGR01366 83 KK-SLHLSFGEF-SSKFAKAVKLA-PWL----GE--PIIVTADP--GSAPEPQAD---PGVDVIAWAHNETSTGVAVP-- 146 (361)
T ss_pred cc-ccEEecCHH-HHHHHHHHHhh-hcc----CC--ceEEecCC--CCCCCCccC---CCCCEEEEcccCCccceecc--
Confidence 22 333333443 32222111110 000 00 00111111 112222222 37899999998999999997
Q ss_pred hhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCc--
Q 012138 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH-- 320 (470)
Q Consensus 245 ~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~-- 320 (470)
+++| ++++|+++|+|.+|+ +| +.....+ . .|++++| |.+++-- .++.++.++++.+.+.+...
T Consensus 147 --i~~I---~~~~g~~~iVDavqs-~g--~~~idv~--~--~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~ 213 (361)
T TIGR01366 147 --VRRP---EGSDDALVVIDATSG-AG--GLPVDIA--E--TDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASG 213 (361)
T ss_pred --cccc---cccCCCeEEEEcCcc-cc--CCCCCHH--H--CCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCC
Confidence 7665 689999999999998 21 1222222 2 4877666 8887422 34556678887766542111
Q ss_pred ------------------cCC-CCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-
Q 012138 321 ------------------GST-FGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR- 376 (470)
Q Consensus 321 ------------------~~t-~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~- 376 (470)
+.+ ++.+.....+..++++++.+ +...++.+++.+++++.|.++....+ ......
T Consensus 214 ~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~-~~~~~~~ 292 (361)
T TIGR01366 214 RWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATP-FVTDPGK 292 (361)
T ss_pred CCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhh
Confidence 122 23445555577778888765 33556677778888888877642110 111110
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.......+.+.. +.+..++.+.|.++||.+.++. .+.+|++....+|++||+++++.|+++++ ++
T Consensus 293 ~s~~v~~v~~~~---g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~-~~ 361 (361)
T TIGR01366 293 RSQVVGTIDFVD---DIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVE-RL 361 (361)
T ss_pred cccceEEEECCC---ccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHh-hC
Confidence 111222333332 2477889999999999987652 56799999999999999999999999987 53
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-14 Score=137.29 Aligned_cols=281 Identities=15% Similarity=0.086 Sum_probs=175.7
Q ss_pred cHHHHHHHHhhhhCC--CeE--EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 118 KFPVFAERLTSMFGY--DMV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~--~~v--~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
...++.++++++++. +.+ +||+||||||..++..++.+. ++. .| +....-|-+...+....+....
T Consensus 67 ~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~-------~~~-~v-i~s~~~H~Sv~kaa~~lg~~~~- 136 (374)
T PLN03032 67 FEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVF-------PDG-IL-YASRESHYSVFKAARMYRMEAV- 136 (374)
T ss_pred HHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhC-------CCc-EE-EeCCCceeHHHHHHHHcCCCCe-
Confidence 345677788888875 345 999999999999999887631 122 33 4444447666655444332111
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC-----cEEEEecccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-----ILMIADEIQS 268 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g-----illI~Dev~~ 268 (470)
..|..+ ...+ |+++|+++|++...++.+|++...++++|.+.| +++|.++|++|| +++++|.+|+
T Consensus 137 --~V~~d~-~g~i---d~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~g 206 (374)
T PLN03032 137 --KVPTLP-SGEI---DYDDLERALAKNRDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALF 206 (374)
T ss_pred --EeeeCC-CCcC---cHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccch
Confidence 111111 1123 899999999864335777878778999999999 999999999997 5899999998
Q ss_pred CCc-c-c--CCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC-----CccCCCCC--CHHHHHHHH
Q 012138 269 GLA-R-S--GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFGG--NPLASAVAI 335 (470)
Q Consensus 269 g~g-~-~--G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~--~~~~~aaa~ 335 (470)
|+- . . -..+.+. ...|.++++ |.++... ++|+++.+++..+.+... ....|..+ +....+.++
T Consensus 207 g~~~p~~~~~~~~~~~---~~vDSis~s~HK~~g~P~-g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w 282 (374)
T PLN03032 207 GLMMPFVSRAPEVTFR---KPIGSVSVSGHKFLGCPM-PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLW 282 (374)
T ss_pred hhhhhccCCCcccCCC---cCCcEEEECcccccCCCc-CeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHH
Confidence 631 1 0 1111111 135777776 6555465 899999988776655321 11123333 334566677
Q ss_pred HHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC
Q 012138 336 ASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 336 a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
++|+.+..+. +.++..++++++.+.|++.. ......+....+.+ ..+. ... ..+|..+.+.
T Consensus 283 ~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~-----~~~~~~p~~~~V~f--~~~~----~~~-----~~~~w~l~~~ 346 (374)
T PLN03032 283 YTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAG-----LTCRLNELSSTVVF--ERPM----DEA-----FIKKWQLACE 346 (374)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcEEECCCceEEEE--cCCC----cHh-----Hhheeeeccc
Confidence 7777766544 55566667777888777641 22222334333333 3221 111 2246555543
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 413 HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 413 ~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.+.+|++....++++.++++++.|++
T Consensus 347 -~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 347 -GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 45899988877889999999988865
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-14 Score=151.63 Aligned_cols=341 Identities=14% Similarity=0.117 Sum_probs=201.5
Q ss_pred CeEEeccCCcccccCCCCCHHHHHH-HHHHHHHccccCCCC------CCCcHHHHHHHHhhhhCC---C-eEEecCChhH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKA-LQEQAEKLTLSSRAF------YNDKFPVFAERLTSMFGY---D-MVLPMNTGAE 143 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a-~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~---~-~v~~~~sGte 143 (470)
..|+|..+... .+|..+++ +.+.+.....++... ..+..++..+.++++++. + .|+||+|+|+
T Consensus 35 ~iYLD~Aatt~------~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGATL------YSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCCCC------CCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHH
Confidence 57888765521 23444444 444444332222111 123456677888888874 3 4899999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-------CeeeecCCCHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-------GHLKVDFGDITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~Le~ 216 (470)
|+..+...+. + .+|+ .||+.... |.+......+....+....+.+... +...+. .+.++|++
T Consensus 109 alnlva~~l~-~-------~~gd-~Iv~t~~e-H~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~-~~~~~l~~ 177 (805)
T PLN02724 109 ALKLVGETFP-W-------SSES-HFCYTLEN-HNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVV-VKSRGLQR 177 (805)
T ss_pred HHHHHHHHCC-C-------CCCC-eEEEeecc-ccchHHHHHHHHHcCCeEEeccchhccccccccccccc-cchhhhhh
Confidence 9998866441 1 1455 45554333 5554433322111111111111110 000000 01245665
Q ss_pred HHH----h---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc--------CcEEEEeccccCCcccCCcccccc
Q 012138 217 IFK----E---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--------NILMIADEIQSGLARSGRMLASDW 281 (470)
Q Consensus 217 ~l~----~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--------gillI~Dev~~g~g~~G~~~~~~~ 281 (470)
.++ . ..+++++|.+..+.|.+|.+.| ++.+..+++.. ++++++|.+|+ + |.. .++.
T Consensus 178 ~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~---g~~-piDv 248 (805)
T PLN02724 178 RNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-C---GTS-PPDL 248 (805)
T ss_pred hhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-c---CCC-CCCh
Confidence 532 1 1135688889999999999997 76654444422 36899999997 2 211 1222
Q ss_pred CCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCccC-C---------C--------------CCCHHHHHHHH
Q 012138 282 EEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS-T---------F--------------GGNPLASAVAI 335 (470)
Q Consensus 282 ~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~~~-t---------~--------------~~~~~~~aaa~ 335 (470)
..+.+|++++| |.+++.. .+|++++++++.+.+.+...++ + + +.|.++++++.
T Consensus 249 ~~~~~Dfl~~S~HK~~GgP~-G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~ 327 (805)
T PLN02724 249 SRYPADFVVVSFYKIFGYPT-GLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALR 327 (805)
T ss_pred hhcCCCEEEEecceeccCCC-CceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHH
Confidence 23456888776 8777554 7899999998877766532221 1 1 36777777888
Q ss_pred HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCC-CceEEE---------eccceeEEEEeccCCC-chhHHHHHHH
Q 012138 336 ASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFP-NYVKEV---------RGRGLFNAVEFDKTAL-PVSAYDICLK 401 (470)
Q Consensus 336 a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p-~~~~~~---------~~~g~~~~~~~~~~~~-~~~~~~~~~~ 401 (470)
++++.+.+ +.+.++.+.+.+++.+.|.++....+ +.+... ..++.++.|.+..... .....++...
T Consensus 328 aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l 407 (805)
T PLN02724 328 HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKL 407 (805)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHH
Confidence 88888765 66888899999999999988742100 012211 1356677776654321 1223445555
Q ss_pred HHHcCceeccCC---------------------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 402 MKERGILAKPTH---------------------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~Gv~~~~~~---------------------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+.||.++.|. .+.+|+|+.+..|++||+++++.|++.+-
T Consensus 408 ~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 408 ASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred HHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 556688875321 27799999999999999999999999875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-14 Score=150.14 Aligned_cols=306 Identities=15% Similarity=0.167 Sum_probs=189.6
Q ss_pred HHHHHHHHhhhhCCCeEEecC-ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 119 FPVFAERLTSMFGYDMVLPMN-TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~~~-sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
..++++++++++|.+.+-+.. +|+.+..+++.+++.| +..+|. +++++|++.. +-|+.........+-... ..
T Consensus 545 i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~y-h~~~Ge-~~r~~vLIp~-saHgtNpasa~~~GieVv---~V 618 (954)
T PRK12566 545 IDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRY-HRSRGQ-SQRDICLIPS-SAHGTNPASAQMAGMRVV---IV 618 (954)
T ss_pred HHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHH-HHhcCC-CCCCEEEecc-cccccCHHHHHHCCCEEE---Ee
Confidence 457889999999999886665 7888888888887764 233332 3455665555 447766544333322111 11
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRM 276 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~ 276 (470)
+...+ ..+ |+++|+++++++.+++++|++..+++-++...+ +++|.++|+++|+++++|-++. +.+....
T Consensus 619 p~D~~-G~i---Dle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~~a~~~l~~- 689 (954)
T PRK12566 619 ECDPD-GNV---DLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANLNAQVGLAR- 689 (954)
T ss_pred ccCCC-CCc---CHHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeChhhccCCCC-
Confidence 11111 122 899999999865568999987764544444444 9999999999999999999997 2221110
Q ss_pred cccccCCCCcceeecc--cccc-----CCCcceeEEEecHHHHhhcCcCC----------cc---CCCCCCHHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGE----------HG---STFGGNPLASAVAIA 336 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~s--K~l~-----gG~~~ig~v~~~~~~~~~~~~~~----------~~---~t~~~~~~~~aaa~a 336 (470)
...+ ..|+++++ |+++ ||. .+|.+.+.+++...+.... .+ ....++.+...++..
T Consensus 690 --Pg~~--GADi~~~s~HKtf~~P~G~GGP-~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~ 764 (954)
T PRK12566 690 --PADI--GADVSHMNLHKTFCIPHGGGGP-GMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWM 764 (954)
T ss_pred --hhhc--CCCEEEecCCcccCcCccCCCC-ccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHH
Confidence 1223 34887665 8876 454 6777777776655544210 11 112233333445555
Q ss_pred HHHHHhhhhHHHH---HHHHHHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCC----CchhHHHHHHHHHHcCce
Q 012138 337 SLDVIRDEKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTA----LPVSAYDICLKMKERGIL 408 (470)
Q Consensus 337 ~l~~~~~~~~~~~---~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~----~~~~~~~~~~~l~~~Gv~ 408 (470)
.++.+..+ +.+. ...+++++.++|.+. ++ ... ....+. +.-+.++... .+.+..++.++|.+.||.
T Consensus 765 Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~---~~-v~~-~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gih 838 (954)
T PRK12566 765 YIAMMGPQ-LADASEVAILSANYLANQLGGA---FP-VLY-RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFH 838 (954)
T ss_pred HHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh---CC-CCc-CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcE
Confidence 55555544 3332 245788888888662 22 111 111111 1111112110 124668899999998987
Q ss_pred ec----cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCCCC
Q 012138 409 AK----PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPK 452 (470)
Q Consensus 409 ~~----~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~ 452 (470)
.. |. .+.+|++|....+++|||+++++|..+.+ |++++...+
T Consensus 839 apt~~fPv-~~~LmIepTE~eskeEIDrf~eAL~~I~~-e~~~v~~g~ 884 (954)
T PRK12566 839 APTMSFPV-PGTLMVEPTESESKAELDRFVEAMLSIRA-EIGKVQEGN 884 (954)
T ss_pred EeEEeecc-CCEEEEEeeeeCCHHHHHHHHHHHHHHHH-HHHHHHcCC
Confidence 54 33 77899999999999999999999999999 887766544
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-14 Score=150.85 Aligned_cols=307 Identities=14% Similarity=0.141 Sum_probs=186.7
Q ss_pred HHHHHHHHhhhhCCCeEEec-CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 119 FPVFAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
..++.+++++++|.+.+.+. ++|++|+.+++.+++.+.. ++|. .++.+|++.+.. |++...+..+.+-... +.
T Consensus 544 i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~-~~G~-~~r~~vlis~~a-H~snp~sa~~~G~~vv---~v 617 (954)
T PRK05367 544 IDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHE-SRGE-GHRDVCLIPSSA-HGTNPASAVMAGMKVV---VV 617 (954)
T ss_pred HHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhh-ccCC-CCCCEEEEEchh-hhhhHHHHHHCCCEEE---EE
Confidence 45788899999999887665 5677888777766665321 2221 123356555555 8776555444332211 11
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRM 276 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~ 276 (470)
+...+ ..+ |+++|++++++++.++++|++....+.++...| +++|.++|+++|+++++|.+|. ++...-
T Consensus 618 ~~d~~-G~i---D~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~al~~l~-- 687 (954)
T PRK05367 618 ACDEN-GNI---DLDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMNAQVGLA-- 687 (954)
T ss_pred CCCCC-CCc---CHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChhhccCCC--
Confidence 11111 122 799999999875456888876553444333466 9999999999999999999996 321100
Q ss_pred cccccCCCCcceeecc--cccc-----CCCcceeEEEecHHHHhhcCcCCc--------cCCCCCCHH----HHHHHHHH
Q 012138 277 LASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGEH--------GSTFGGNPL----ASAVAIAS 337 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~s--K~l~-----gG~~~ig~v~~~~~~~~~~~~~~~--------~~t~~~~~~----~~aaa~a~ 337 (470)
....+| .|+++++ |.++ ||- .+|.+.+++.+...+..... .++....+. ....++..
T Consensus 688 -~pg~~G--ADi~~~s~HK~f~~P~G~GGP-g~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~y 763 (954)
T PRK05367 688 -RPGDIG--ADVSHLNLHKTFCIPHGGGGP-GVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMY 763 (954)
T ss_pred -ChhhcC--CCEEEecCcccCCCCcCCCCC-ceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHH
Confidence 011233 4777666 8875 454 67888888766554432110 011111222 22224445
Q ss_pred HHHHhhhhHHHHHH---HHHHHHHHHHHHHHhhCCCceEE----EeccceeEEE-EeccCCCchhHHHHHHHHHHcCcee
Q 012138 338 LDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKE----VRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILA 409 (470)
Q Consensus 338 l~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~p~~~~~----~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~ 409 (470)
+..+..+.+++..+ .+++++.++|.+. ++ .... ..-...++-+ .+.. ..+....++.++|.+.|+..
T Consensus 764 i~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~---~~-~~~~~~~~~~~~e~i~~~~~~~~-~~g~~~~di~krL~d~G~~~ 838 (954)
T PRK05367 764 IRMMGAEGLRQATEVAILNANYIAKRLKDH---YP-VLYTGANGRVAHECILDLRPLKE-STGITVDDIAKRLIDYGFHA 838 (954)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHhh---cC-ccccCCCCCcccceEEEeecccc-cCCCCHHHHHHHHHHCCCeE
Confidence 55555566777666 7888999988763 21 1110 0001112222 1111 11236788999999999986
Q ss_pred ccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCCC
Q 012138 410 KPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP 451 (470)
Q Consensus 410 ~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~ 451 (470)
... ..+.+|++|....|++|||+++++|..+.. ++.++...
T Consensus 839 ~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~-e~~~~~~~ 882 (954)
T PRK05367 839 PTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRA-EIDEVEAG 882 (954)
T ss_pred eecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHH-HHHHhhcC
Confidence 432 267899999999999999999999999998 88775443
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=143.28 Aligned_cols=302 Identities=13% Similarity=0.108 Sum_probs=178.7
Q ss_pred CcHHHHHHHHhhhhCCC---eEEecCChh-HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 117 DKFPVFAERLTSMFGYD---MVLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~---~v~~~~sGt-eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+..++++++++++|.+ .++++++|| .++.+++.+++.. .++++ .||....+ |-++..++.+.+-...
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~------~~~gd-~VI~p~~t-h~S~~kAi~~~G~~pv 176 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK------RPKAK-YVIWPRID-QKSCIKAISTAGFEPR 176 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc------CCCCC-EEEEECcC-hHHHHHHHHHcCCeEE
Confidence 34567888888888877 799999999 6888887765421 01244 66666666 6666666655543211
Q ss_pred ccCCCCC--CCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 193 IRGFGPL--LPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 193 ~~~~~~~--~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
+.+. .++...+ |+++|+++|++.. ..+.+|+..|..++.|...+ +++|.++|++||+++|+|++|+.
T Consensus 177 ---~Vd~~~d~~~~~i---D~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg~ 246 (444)
T TIGR03531 177 ---VIETVLDGDELTT---DVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYGL 246 (444)
T ss_pred ---EeeeeecCcCCCc---CHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCcC
Confidence 1111 1122223 8999999998643 23444555553344455555 99999999999999999999983
Q ss_pred Cc-ccCCccccccCCC-Cccee--eccccccCCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-
Q 012138 270 LA-RSGRMLASDWEEV-RPDMV--ILGKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD- 343 (470)
Q Consensus 270 ~g-~~G~~~~~~~~~~-~pdi~--s~sK~l~gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~- 343 (470)
.. ...... ...... ..|++ ++.|.+.... ..|+++. ++++++.+.....+.. .+...+.+....+..-.+
T Consensus 247 ~~~~~~~~~-~~g~~~Grad~vv~s~hK~l~~pg-~Gg~I~~~d~el~~~i~~~y~g~~--~~s~~~~~~~~ll~~G~~g 322 (444)
T TIGR03531 247 QSNKYMELI-NKAIKVGRVDAVVSSTDKNFMVPV-GGAIIYSFDENFIQEISKSYPGRA--SASPSLDVLITLLSLGSKG 322 (444)
T ss_pred cChhhhhhh-hccccccCCCeEEEeCccCCCCCC-CEEEEEECCHHHHHHHHHhccCCC--CChHHHHHHHHHHHhCHHH
Confidence 21 111110 011111 23655 4558877322 3445555 7778777764322211 222333333333332222
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCce----eccCC-----
Q 012138 344 -EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL----AKPTH----- 413 (470)
Q Consensus 344 -~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~----~~~~~----- 413 (470)
+++.++..++.+++.+.|+++..+++..+-..+....-+++.+..-. +.+...+...|..++|. +.++.
T Consensus 323 ~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~ 401 (444)
T TIGR03531 323 YLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVG 401 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-ccCHHHHHHHHHhCCCCCceeecCCCceEEC
Confidence 56777888899999999999887765333333333333444443211 23577788888888763 22221
Q ss_pred ---------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 414 ---------------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 414 ---------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..++-++..+.++++||+.++++|++++
T Consensus 402 ~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 402 GCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred CEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 1234444456789999999999999864
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=140.95 Aligned_cols=306 Identities=10% Similarity=0.031 Sum_probs=182.2
Q ss_pred CCHHHHHHHHHHHHHccccCCCC----C------CCcHHHHHHHHhhhhCC---CeEEecCC-hhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF----Y------NDKFPVFAERLTSMFGY---DMVLPMNT-GAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~----~------~~~~~~l~~~l~~~~~~---~~v~~~~s-GteA~~~al~~~~~~~~ 157 (470)
.++.|.+++.+.+..+. +.+.. . .+...+..+.++++++. +.++|++| ||+|+++++..+..
T Consensus 10 ~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~--- 85 (355)
T cd00611 10 LPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG--- 85 (355)
T ss_pred CCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC---
Confidence 57999999999886543 22111 1 13356778888888874 35888866 99999999986632
Q ss_pred hcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec----CCC-HHHHHHHHHhcCCCeEEEEEcc
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD----FGD-ITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d-~~~Le~~l~~~~~~~~~vi~ep 232 (470)
++++...+..+.|.-+........+.... ....+ ..+ ++..+..++ +++++|.+..
T Consensus 86 ------~~~~~~~i~~g~~~~~~~~~a~~~g~~~~----------~~~~~~~g~~~~~~~~~~~~~~---~~~~lV~~~h 146 (355)
T cd00611 86 ------DKGTADYVVTGAWSAKAAKEAKRYGGVVV----------IVAAKEEGKYTKIPDVETWDLA---PDAAYVHYCS 146 (355)
T ss_pred ------CCCeEEEEECCHHHHHHHHHHHhcCCCcE----------EEecccccCCCCCCCHhhcCCC---CCCCEEEEeC
Confidence 12222222233332111101011010000 01111 112 222222233 3788888888
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 312 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~ 312 (470)
..|.+|...+ ++++.||+++++|.+|+ +| +.....+.+++ ++.+--|.+| .. .+|.+++++++.
T Consensus 147 ~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g--~~~idv~~~~~--~~ss~~K~lG-P~-G~g~l~~~~~~~ 210 (355)
T cd00611 147 NETIHGVEFD---------EVPDTGGVPLVADMSSN-IL--SRPIDVSKFGV--IYAGAQKNLG-PA-GVTVVIVRKDLL 210 (355)
T ss_pred CcccccEEcc---------eecccCCCeEEEEcccc-cc--CCCCCHHHhCE--EEeecccccC-CC-ceEEEEECHHHH
Confidence 8889999763 45666999999999998 21 11223333332 3333458775 43 689999999988
Q ss_pred hhcCcCC-----------ccC-CCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 313 LCIQPGE-----------HGS-TFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 313 ~~~~~~~-----------~~~-t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+.+.+.. ... .+++|.....+..++++++.+. .+.++.+++.+++++.|+++..-+. ......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~-~~~~~~ 289 (355)
T cd00611 211 GKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYR-GPVDKR 289 (355)
T ss_pred hhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccc-cCCCHH
Confidence 7765421 111 2356777888888899987653 4566777788888888877621110 011101
Q ss_pred cc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 377 GR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 377 ~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+ +..+.+.++... ...++...+.++|+.+.++. .+.+|+++...+|+|||+++++.|+++
T Consensus 290 ~rs~~vvsf~~~~~~---l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 290 ARSRMNVPFRLGKEE---LEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HcCceEEEEEcCChh---hhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 12 234555444311 22455567888999865553 478999999999999999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-15 Score=144.61 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=173.2
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh-cccCCccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~ 192 (470)
..++...+|++.++++.|.+.++.++||+.|+.+++..+.+ +|+ .||+....|.+ +.... ..-...+
T Consensus 61 ~~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~---------~GD-~Vl~~~~~yg~-t~~~~~~~~~~~G- 128 (384)
T PRK06434 61 WGNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIK---------KGK-RILSISDLYGQ-TFYFFNKVLKTLG- 128 (384)
T ss_pred CCChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEecCccch-HHHHHHHHHHhcC-
Confidence 45778899999999999999999999999999999987654 566 55555555433 22221 1000000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
..+.+++.++.+.++ ++. +++++|++|.+.||++.+.+ +++|.++|++++ +++|.+++.- .
T Consensus 129 --------i~v~fvd~~~~~~~~--l~~--~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~s~-~ 189 (384)
T PRK06434 129 --------IHVDYIDTDRLNSLD--FDP--SNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFASP-Y 189 (384)
T ss_pred --------cEEEEECCCChhhee--ecC--CCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCCCc-c
Confidence 112344333333443 222 36899999999999999998 999999999998 4669997521 1
Q ss_pred cCCccccccCCCCcceeecc--ccccC-CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 273 SGRMLASDWEEVRPDMVILG--KALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~s~s--K~l~g-G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
.++ ..+...|++++| |.++| |=.-.|+++. ++++.+.++..........+++.++.+...|+.+ +...+
T Consensus 190 ~~~-----pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~ 262 (384)
T PRK06434 190 NQN-----PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRME 262 (384)
T ss_pred cCC-----chhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHH
Confidence 222 223345777555 88875 3113555655 5566565543221223345777777776666554 33566
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCc---eEEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCceec--------c
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNY---VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILAK--------P 411 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~~--------~ 411 (470)
+..+++..+.+.|+.... .||.. -....+.|.++.++++.. ..+.+|.+.|.- .++... |
T Consensus 263 r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~---~~~~~f~~~l~l~~~~~slG~~~sl~~~p 339 (384)
T PRK06434 263 KHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSM---EDVHKFIRNLEIPMVAASLGGVESLITLP 339 (384)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCH---HHHHHHHHhCCcceEccCCCCCCeeeECC
Confidence 667777777777765321 12210 001236688999988632 245566665541 121111 1
Q ss_pred C-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 412 T-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 412 ~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .++.|||++.+ |+++.+++-|.++|.
T Consensus 340 ~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al~ 383 (384)
T PRK06434 340 VETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENALS 383 (384)
T ss_pred CccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHhc
Confidence 1 15689999554 567888888877775
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-13 Score=136.48 Aligned_cols=308 Identities=18% Similarity=0.182 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHHHHHccccCC----CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSR----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
-++++.+++.+.++.+..... ....+....+++.+++++|.+.+++++||+.|+..++..+ . +|+
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l-~---------~Gd- 161 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTL-A---------KGK- 161 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh-C---------CcC-
Confidence 468999999998886541100 1122346789999999999988889999999998888543 2 466
Q ss_pred EEEEEccC---cccccc--chhcccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHhcCCCeEEEEEccccCC--C
Q 012138 168 IIVSCCGC---FHGRTL--AAISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGE--A 237 (470)
Q Consensus 168 ~ii~~~~~---yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~~~~~~~~vi~epi~n~--~ 237 (470)
.||+.+.. |.|... ..+...+. ....+++ .+++++++++++ +|++|+++...|+ .
T Consensus 162 eVIvs~~e~v~~ggs~~i~~~~~~~G~------------~~~~v~~~~~~~l~dle~aI~~---~T~lv~~~h~sN~~~~ 226 (454)
T TIGR00474 162 EVIVSRGELVEIGGSFRIPDVMEQSGA------------KLVEVGTTNRTHLKDYEDAITE---NTALLLKVHTSNYRIV 226 (454)
T ss_pred EEEECCChhhhhcchhhHHHHHHHcCC------------EEEEeCCCCCCCHHHHHHhcCc---CCEEEEEEccCccccc
Confidence 55554444 222111 11111111 1223333 368899998876 7999888777776 3
Q ss_pred c--cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC------ccccccCCCCcceeecc--ccccCCCcceeEEEe
Q 012138 238 G--VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR------MLASDWEEVRPDMVILG--KALGGGVIPVSAVLA 307 (470)
Q Consensus 238 G--~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~------~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~ 307 (470)
| .+.| +++|.++|++||+++|+|....-++..+. ....+......|+++|| |.++|. ..|++++
T Consensus 227 G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp--~~G~i~g 300 (454)
T TIGR00474 227 GFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP--QAGIIVG 300 (454)
T ss_pred CCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC--eEEEEEE
Confidence 6 4677 99999999999999999975322222111 11112222346899888 988764 4788889
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhh--hH------------HHHHHHHHHHHHHHHHHHHhhCCCc-e
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE--KL------------AERSAHLGEELRQHLFKIQQQFPNY-V 372 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~--~~------------~~~~~~~~~~l~~~L~~l~~~~p~~-~ 372 (470)
++++++.++.......+...-+..++..+++....++ .+ .++.++++..+.+.|+.... ++. +
T Consensus 301 ~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~--~~~~~ 378 (454)
T TIGR00474 301 KKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALG--PGFEL 378 (454)
T ss_pred CHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhcc--CCceE
Confidence 9998887764322222223333444444555443221 01 12444456666666655311 001 1
Q ss_pred EEEec-----cce-------eEEEEeccCCCchhHHHHHHHHHHcC--ceeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 373 KEVRG-----RGL-------FNAVEFDKTALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 373 ~~~~~-----~g~-------~~~~~~~~~~~~~~~~~~~~~l~~~G--v~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
..+.. .|. -+.+.+... +.++.++.++|++.. |+.. ...+.+.+-+ .+..++|++.++++|
T Consensus 379 ~~~~~~~~~ggg~~p~~~l~~~~v~~~~~--~~~~~~l~~~lr~~~~~ii~r-~~~~~~~ld~-r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 379 EIVPGLSQVGGGSLPDERLPSYAVTLTPD--GLSAEKLEARLRELPPPIIGR-IEDDRFLLDL-RTLLEDEEELLIEAL 453 (454)
T ss_pred EEEEcCCcccCCCCcCCCCCeEEEEEecC--CCCHHHHHHHHhcCCCCEEEE-EECCEEEEEe-CcCCHHHHHHHHHHh
Confidence 11111 121 122333322 246788999998774 4443 3466667764 356788888888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-13 Score=124.01 Aligned_cols=334 Identities=19% Similarity=0.193 Sum_probs=217.6
Q ss_pred EeCCCCeEEeccCCcccccCCCCCHHHHHHHHH-HHHHcccc---CC----CCCCCcHHHHHHHHhhhhC--CCeEEecC
Q 012138 70 WDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQE-QAEKLTLS---SR----AFYNDKFPVFAERLTSMFG--YDMVLPMN 139 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~-~~~~~~~~---~~----~~~~~~~~~l~~~l~~~~~--~~~v~~~~ 139 (470)
.+.+|-.|||- ++||-.++.+.+...+ ..+..... ++ ....++-+.+..+|+.+.| ..+|+.++
T Consensus 27 ~lp~~viyLdg------nSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~d 100 (407)
T COG3844 27 ALPGGVIYLDG------NSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTD 100 (407)
T ss_pred cCCCCeEEeec------cccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeC
Confidence 34556667663 4567555455544433 33332211 11 1123344566777777776 45788888
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
|-+--+...+.++.+. .+|+.+|++...+|......+..+..-. ...+. - ...+ .+++++++++
T Consensus 101 tts~nl~k~L~aalr~-------~~~r~vIv~E~~~fpTdly~a~g~~~~~--~~~~~---~-~~~~---~P~~~~~~~~ 164 (407)
T COG3844 101 TTSINLFKVLAAALRP-------QEGRRVIVSEGDNFPTDLYIAEGLADLL--GIGYD---L-EGVI---APRALEEAIT 164 (407)
T ss_pred CcchHHHHHHHHHhcc-------CCCceEEeecCCCCCcchhhhcchhhhh--ccccc---c-eeee---ChHHHHHhhc
Confidence 8776666666666542 1467777777777754433322211100 00000 0 0111 6889999998
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCCCcceeeccccccCC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVRPDMVILGKALGGG 298 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~~pdi~s~sK~l~gG 298 (470)
+ +++.|++..++--||...+ +.+|..++++||++++.|=+|+ .|.. ......|.+.-+.|.-|-+.||
T Consensus 165 d---d~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs----aGavp~~Lh~~gaDfaigcsyKYLNgG 233 (407)
T COG3844 165 D---DVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS----AGAVPVDLHAAGADFAIGCSYKYLNGG 233 (407)
T ss_pred c---ceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc----cCCcceeecccCCCeeeeeeceeccCC
Confidence 7 8999999999999999998 9999999999999999999998 2221 1123345554566777988866
Q ss_pred CcceeEEEecHHHHhhcCcC--------------------CccCCC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHH
Q 012138 299 VIPVSAVLADKEVMLCIQPG--------------------EHGSTF---GGNPLASAVAIASLDVIRD---EKLAERSAH 352 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~--------------------~~~~t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~ 352 (470)
-...+++.+.++..+...+. .+...| +.+.+++++...+|++..+ .+++++...
T Consensus 234 PGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSla 313 (407)
T COG3844 234 PGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLA 313 (407)
T ss_pred CCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhH
Confidence 54566666666555443221 111112 2466678888888988766 567788888
Q ss_pred HHHHHHHHHHHHHhhCCCceEEE-----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEec-CCCCC
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEV-----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP-PLSIS 426 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~-~~~~t 426 (470)
+.+++.+.++.....++ +..+ ..+|..+.+..+ ....+++.|.++||+..-..++.+||.| |+..+
T Consensus 314 LTd~fieLvEa~~~~~~--l~l~tPr~~~~rGsqvS~~hp------~~~~V~qaLi~rGVigD~R~P~vlRfgftPlY~~ 385 (407)
T COG3844 314 LTDYFIELVEARCEYYG--LTLVTPRAHEERGSQVSLYHP------HGYQVMQALIDRGVIGDFREPDVLRFGFTPLYVS 385 (407)
T ss_pred HHHHHHHHHHhccccCC--cEEeccchhhhccceeeEecC------cHHHHHHHHHHcCccccccCCCeeeecCccceec
Confidence 88888888877655443 2222 234666666443 5788999999999998766789999988 78999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 012138 427 SNELQEGSKALHDVLELDL 445 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~~~~ 445 (470)
.+|+-.+++.|.++++ ..
T Consensus 386 ~~DVw~AV~~L~evL~-t~ 403 (407)
T COG3844 386 FVDVWDAVDALEEVLD-TL 403 (407)
T ss_pred hhHHHHHHHHHHHHHH-hh
Confidence 9999999999999998 54
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-13 Score=143.57 Aligned_cols=307 Identities=16% Similarity=0.199 Sum_probs=195.7
Q ss_pred cHHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 118 KFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
...++.++|++++|++.+ +..++|+.|..+++.+++.|. ..+|. .++.+|++. .+-||....+....+-... .
T Consensus 531 ~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~-~~rge-~~R~~vlip-~saHgtnPasa~~~G~~Vv---~ 604 (939)
T TIGR00461 531 LIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYH-ESRGE-NHRNICLIP-VSAHGTNPASAAMAGMQVV---P 604 (939)
T ss_pred HHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHH-HhcCC-CCCCEEEEE-ccccCcCHHHHHHCCCEEE---E
Confidence 356789999999999864 566778888877888887642 33331 134344444 4458877655444332111 1
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-CcccCC
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGR 275 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g-~g~~G~ 275 (470)
.+... ...+ |+++|+++++++++++++|++...++ .|.+.++ +++|.++|+++|.++++|-+|.. +...-
T Consensus 605 V~~d~-~G~i---Dle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~~l~- 675 (939)
T TIGR00461 605 VNCDQ-DGNI---DLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQVGLT- 675 (939)
T ss_pred eccCC-CCCc---CHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCCCCC-
Confidence 11110 1122 89999999987666899999877566 6766433 89999999999999999999962 32110
Q ss_pred ccccccCCCCcceeecc--cccc-----CCCcceeEEEecHHHHhhcCcCC----------------ccCCCCCCHHHHH
Q 012138 276 MLASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGE----------------HGSTFGGNPLASA 332 (470)
Q Consensus 276 ~~~~~~~~~~pdi~s~s--K~l~-----gG~~~ig~v~~~~~~~~~~~~~~----------------~~~t~~~~~~~~a 332 (470)
... ....|++.++ |+|+ ||. .+|.+.+++++...+.... ..+.+.++.....
T Consensus 676 --~Pg--~~GaDi~~~s~HKtf~~P~G~GGP-g~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l 750 (939)
T TIGR00461 676 --SPG--DLGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILP 750 (939)
T ss_pred --Ccc--ccCCCEEEecCCccCCCCCCCCCC-CeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHH
Confidence 011 2235888775 9887 676 8899999887665443111 1112335555556
Q ss_pred HHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHhhCCCceEEEec-cce-e--EEEEecc--CCCchhHHHHHHHHH
Q 012138 333 VAIASLDVIRDEKLA---ERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGL-F--NAVEFDK--TALPVSAYDICLKMK 403 (470)
Q Consensus 333 aa~a~l~~~~~~~~~---~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g~-~--~~~~~~~--~~~~~~~~~~~~~l~ 403 (470)
.++..+..+..+.+. +..-.+++++.++|.+. ++ .+. .+ .+. + +.+.+.. ...+....++.++|.
T Consensus 751 ~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~~-~l~--~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~ 824 (939)
T TIGR00461 751 ISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---YP-ILF--VGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQ 824 (939)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---Cc-ccc--cCCCCceeEEEEEeccchhhhcCCCHHHHHHHHH
Confidence 677777777765544 44555788888888762 21 121 11 111 1 2222221 011346889999999
Q ss_pred HcCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCCC
Q 012138 404 ERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP 451 (470)
Q Consensus 404 ~~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~ 451 (470)
+.|+..... -.+.+-+.|.-..|++|||++++++.++-+ +++++.+.
T Consensus 825 d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~-e~~~~~~g 874 (939)
T TIGR00461 825 DYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKE-EINALVAG 874 (939)
T ss_pred hCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHH-HHHHhhcC
Confidence 999985321 124788888899999999999999999888 87775443
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-14 Score=142.13 Aligned_cols=316 Identities=13% Similarity=0.047 Sum_probs=186.4
Q ss_pred CCcHHHHHHHHhhhhCCCe---------EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 116 NDKFPVFAERLTSMFGYDM---------VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~---------v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
.....++.+|+++++|.+. -++|+|||+||..|+.++|.+.....+.......++..+..-|.+...+..+
T Consensus 121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~ 200 (490)
T PLN02880 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQI 200 (490)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHH
Confidence 3445667788888887653 5789999999999999999754332221111224454454448777666555
Q ss_pred cCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 187 SCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
-+-........|... +...+ |+++|+++|++. +..+.+|+.+--...+|.+.| +++|.++|++||++++
T Consensus 201 lGlg~~~v~~Vp~d~~~~~~m---d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlH 273 (490)
T PLN02880 201 AGIHPENCRLLKTDSSTNYAL---APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFH 273 (490)
T ss_pred cCCCHHHEEEeecCCCcCCcC---CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEE
Confidence 543211000011111 01223 899999999752 233556666665678999999 9999999999999999
Q ss_pred EeccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH--HHhhcCcC----Cc-----cCC-----
Q 012138 263 ADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCIQPG----EH-----GST----- 323 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~--~~~~~~~~----~~-----~~t----- 323 (470)
+|.+|+|+...-..+.....++ ..|.+++ -|.+...+ +.|+++.+.. +.+.+... .. ..+
T Consensus 274 VDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~-~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~ 352 (490)
T PLN02880 274 VDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNF-DCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKD 352 (490)
T ss_pred EehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCc-cEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhc
Confidence 9999986432211111112343 3566644 48888777 8899887642 22222110 00 000
Q ss_pred CC---CCHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCC-----
Q 012138 324 FG---GNPLASAVAIASLDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTAL----- 391 (470)
Q Consensus 324 ~~---~~~~~~aaa~a~l~~~~~~~~~~~~~---~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~----- 391 (470)
++ +........+.+|+.+..+.+.++++ ++++++.+.|++. | .+..+ ++.-.++.+.+.....
T Consensus 353 ~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~----~-~~el~~~~~~~iv~Fr~~~~~~~~~~~ 427 (490)
T PLN02880 353 WQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD----S-RFEVVTPRIFSLVCFRLVPPKNNEDNG 427 (490)
T ss_pred cCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEecCCceEEEEEEEeCCCCChhhH
Confidence 11 11112334445566666677777777 7777777766542 2 22222 2344456665543210
Q ss_pred chhHHHHHHHHHHcCce-ecc---CCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhccc
Q 012138 392 PVSAYDICLKMKERGIL-AKP---THDTIVRLTPPLS-ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 392 ~~~~~~~~~~l~~~Gv~-~~~---~~~~~iR~~~~~~-~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.....++.++|.+.|-+ +.+ .+..++|+++... +++++++.+++.|.+..+ ++
T Consensus 428 ~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~-~~ 485 (490)
T PLN02880 428 NKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS-KL 485 (490)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 01123566677766543 332 2467899987544 457999999999999887 65
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-13 Score=131.99 Aligned_cols=339 Identities=16% Similarity=0.152 Sum_probs=191.2
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~ 153 (470)
..-|||+.+-.+. +.+.++....+....-.+ .-.+...+|++.+++++|.+.+++++||+.|++.+..+..
T Consensus 44 ~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~Y--agd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v 114 (460)
T PRK13237 44 EDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEAY--AGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAI 114 (460)
T ss_pred CcEEEECcccCCc-------hhccHHHHHHHhhcchhh--cCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC
Confidence 3467898877543 223344333332211111 1244578999999999999999999999999998644322
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccch-hcccCCcccccC-----CCC--CCCCeeeecCCCHHHHHHHHHhcC-CC
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEAIRG-----FGP--LLPGHLKVDFGDITALEKIFKESG-DQ 224 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~-----~~~--~~~~~~~~~~~d~~~Le~~l~~~~-~~ 224 (470)
+ +|+ .| .+.+|-.+..+ +...+. .+... +.+ ..+....+ |++.|+++|++.+ .+
T Consensus 115 ~---------pGd-~V---p~n~~f~Tt~ahI~~~Ga-~fvDi~~d~a~~~~~~~p~tgnl---D~d~Le~~I~~~~~~~ 177 (460)
T PRK13237 115 K---------PGQ-YV---PGNMYFTTTRYHQELNGG-IFVDIIIDEAHDAQSDHPFKGNV---DLDKLQALIDEVGAEN 177 (460)
T ss_pred C---------CcC-EE---CCccchHhhHHHHHhCCc-EEEeeecccccccccCCCCCCCc---CHHHHHHHhccccCCc
Confidence 2 465 33 23323222222 222221 01000 000 00111222 8999999998643 34
Q ss_pred eEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C---Cc------ccCCccc---cccCCCCcceee
Q 012138 225 IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G---LA------RSGRMLA---SDWEEVRPDMVI 290 (470)
Q Consensus 225 ~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g---~g------~~G~~~~---~~~~~~~pdi~s 290 (470)
++.+. +.++|.-+|..+ +.+.++++.++|++||+.||.|.++. | |- +.|+... .+... -.|.++
T Consensus 178 ~~lV~a~itvn~~GGqpv-s~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s-~aD~~t 255 (460)
T PRK13237 178 IAYICLAVTVNLAGGQPV-SMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFS-YADGCT 255 (460)
T ss_pred cCceEEEEecccCCCeeC-CHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccC-cCcEEE
Confidence 44444 444344457877 78889999999999999999999998 3 21 1221110 01111 237665
Q ss_pred cc--ccccCCCcceeEEE-ecHHHHhhcCcC----CccCCCCCCHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012138 291 LG--KALGGGVIPVSAVL-ADKEVMLCIQPG----EHGSTFGGNPL-ASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 291 ~s--K~l~gG~~~ig~v~-~~~~~~~~~~~~----~~~~t~~~~~~-~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~ 362 (470)
|| |.++.+. -|+++ .++++.+.++.. ....|+++-.- -+.+....|+...++++.++.-...++|.+.|.
T Consensus 256 ~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~ 333 (460)
T PRK13237 256 MSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLL 333 (460)
T ss_pred EeCCCCCCCCC--ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 55 6555321 13344 577888777643 23335544211 233333334444444566666667788888887
Q ss_pred HHHhhCCCceEEEeccceeEEEEeccCC-------CchhHHHHHHHHHHc-Cceec----------cC-C------CCEE
Q 012138 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTA-------LPVSAYDICLKMKER-GILAK----------PT-H------DTIV 417 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~l~~~-Gv~~~----------~~-~------~~~i 417 (470)
+. .+..+.+.|....+ ++... ....++.++.+|... ||-.. |. + -..+
T Consensus 334 ~~------Gvpv~~p~ggH~v~-vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~ 406 (460)
T PRK13237 334 AA------GVPIVEPVGGHAVF-LDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELV 406 (460)
T ss_pred HC------CCceecCCCceEEE-EEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCcccee
Confidence 73 34444445443333 32211 023577788777655 76432 10 0 2679
Q ss_pred EEecCC-CCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 418 RLTPPL-SISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 418 R~~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
|+++|. +.|.++++..+++|..+.+ +...+.-
T Consensus 407 rlaiprr~yt~~h~~~v~~~~~~~~~-~~~~~~g 439 (460)
T PRK13237 407 RLTIPRRVYTYAHMDVVADSVIKLYK-HREDIRG 439 (460)
T ss_pred eeccccccccHHHHHHHHHHHHHHHH-hHhhcCC
Confidence 998764 5699999999999999988 6555544
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=134.04 Aligned_cols=289 Identities=19% Similarity=0.190 Sum_probs=179.4
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++.+..|++.++++.|.+..+.++||..|+..++..+.+ +|+ .|+..+..|.|.......+-..
T Consensus 60 ~~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~---------~GD-~vl~~~~~YG~t~~~~~~~l~~---- 125 (396)
T COG0626 60 TGNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLK---------AGD-HVLLPDDLYGGTYRLFEKILQK---- 125 (396)
T ss_pred CCCccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcC---------CCC-EEEecCCccchHHHHHHHHHHh----
Confidence 45788999999999999999999999999999998887765 466 6666666775433222111111
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
+.-++..+...+.+++++++.+ +++++|++|++.||+-.+.+ +++|.++|+++|+++|+|+++..
T Consensus 126 -----~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat---- 190 (396)
T COG0626 126 -----FGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT---- 190 (396)
T ss_pred -----cCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc----
Confidence 0011233433355566666653 37999999999999999998 99999999999999999999873
Q ss_pred CCccccccCCCCccee--eccccccCCC-cceeEEEe-cHHHHhhcCcCCc-cCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLA-DKEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~-~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
+-. +..+..-.|++ +.+|-++|.- .=.|.+++ ++++.+.+..... ......+|..+...+..|+.+.- ..+
T Consensus 191 P~~--q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~~--Rm~ 266 (396)
T COG0626 191 PVL--QRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLAL--RME 266 (396)
T ss_pred ccc--cChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHHH--HHH
Confidence 111 22233334766 7789998632 13344554 4455554421111 12233677777766665554432 334
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCCc---------eEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec-----
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPNY---------VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----- 410 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~~---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----- 410 (470)
+..+++..+.+.|++... .||.. .....+.|.++.+++.... ...+|.+.|+--.+..+
T Consensus 267 ~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~---~~~~f~~~L~l~~~a~SlGgve 343 (396)
T COG0626 267 RHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEE---AAKKFLDSLKLFKLAESLGGVE 343 (396)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChH---HHHHHHHhCCccEEeccCCCcc
Confidence 444455555555555211 11210 0011247889999887522 56666666543222211
Q ss_pred -----cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -----PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -----~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.+|+++.+ |+++.+++-|+++++
T Consensus 344 SLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~ 393 (396)
T COG0626 344 SLISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALA 393 (396)
T ss_pred cccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHH
Confidence 10 16889999554 677777777777776
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=139.87 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=137.3
Q ss_pred CCCcHHHHHHHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 115 YNDKFPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.....++++.+++++|.+++++ ++|+++++..++..+.. +|+ .|++..++ |.+...++.+.+....
T Consensus 57 ~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~---------~gd-~Vlv~~~~-h~s~~~~~~~~g~~~~- 124 (294)
T cd00615 57 PTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCG---------PGD-KILIDRNC-HKSVINGLVLSGAVPV- 124 (294)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCC---------CCC-EEEEeCCc-hHHHHHHHHHCCCEEE-
Confidence 45557888999999999887665 88889999998886654 455 77777777 4444444444332111
Q ss_pred cCCCCCCCC-eeee-cCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-C
Q 012138 194 RGFGPLLPG-HLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-L 270 (470)
Q Consensus 194 ~~~~~~~~~-~~~~-~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g-~ 270 (470)
+.+...+ ...+ ..-|+++++++++++ .++++|++.. .|++|.+.| +++|.++|++||+++|+||+|.. +
T Consensus 125 --~v~~~~~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~-p~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~ 196 (294)
T cd00615 125 --YLKPERNPYYGIAGGIPPETFKKALIEH-PDAKAAVITN-PTYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHF 196 (294)
T ss_pred --EecCccCcccCcCCCCCHHHHHHHHHhC-CCceEEEEEC-CCCCCEecC----HHHHHHHHHhcCCeEEEECcchhhh
Confidence 1111000 0000 012899999999753 2577777554 368999998 99999999999999999999984 3
Q ss_pred cccCCccccccCCCCccee--eccccccCCCcceeE-EEecHHHH--hhcC-cCCccCCCCCCHHHHHHHHHHHHHHhh-
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSA-VLADKEVM--LCIQ-PGEHGSTFGGNPLASAVAIASLDVIRD- 343 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~-v~~~~~~~--~~~~-~~~~~~t~~~~~~~~aaa~a~l~~~~~- 343 (470)
...+... ........|++ +++|+++ |+ +.|+ +..+.+.. +.+. ......+.+++.+.+++..++++.+..
T Consensus 197 ~~~~~~~-~~~~~~~~div~~S~hK~l~-g~-~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~ 273 (294)
T cd00615 197 RFHPILP-SSAAMAGADIVVQSTHKTLP-AL-TQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALE 273 (294)
T ss_pred ccCcccC-cchhhcCCcEEEEchhcccc-hH-hHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2222211 11111233655 7779875 33 4433 33433211 1111 111223445677777887788877653
Q ss_pred -hhHHHHHHHHHHHHHHHHH
Q 012138 344 -EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 344 -~~~~~~~~~~~~~l~~~L~ 362 (470)
.++.++..++.+++++.|+
T Consensus 274 g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 274 GKELVEELIELALYARQEIN 293 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 4466677777777776654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=131.24 Aligned_cols=341 Identities=15% Similarity=0.180 Sum_probs=193.5
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHH-HHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKA-LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
..-|||+.+-.+. +.+.++ +......-. .+ .-.+...+|++.+++++|.+.+++++||+.|++.+..+.
T Consensus 37 ~~v~iDLltDsgT-------~aMs~~q~a~~~~GDe-~y--ag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~ 106 (450)
T TIGR02618 37 EDVYIDLLTDSGT-------NAMSDKQWAGLMMGDE-AY--AGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIA 106 (450)
T ss_pred CceEEEcccCCCc-------HHHHHHHHHHhhhcch-hh--cCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhC
Confidence 3467898876433 345554 333321111 11 124557899999999999999999999999988654322
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccC-----CCCC--CCCeeeecCCCHHHHHHHHHhcC-CC
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-----FGPL--LPGHLKVDFGDITALEKIFKESG-DQ 224 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~d~~~Le~~l~~~~-~~ 224 (470)
.+ +|+ .| ..+.|-..+...+...+. .+... +.+. .+....+ |+++|+++|++.+ .+
T Consensus 107 l~---------pGD-eV--psn~~f~Tt~ahIe~~Ga-v~vDi~~dea~~~~~~~p~~Gni---D~~~Le~aI~~~~~~~ 170 (450)
T TIGR02618 107 IK---------PGD-YV--PGNMYFTTTRYHQEKNGA-TFVDIIIDEAHDAQLNIPFKGNV---DLKKLQKLIDEVGADK 170 (450)
T ss_pred CC---------CcC-EE--CCceeHHHHHHHHHhCCe-EEEeeecccccccccCCCCCCCc---CHHHHHHHhccccCcc
Confidence 22 566 44 333331222221222221 11000 0000 0111222 8999999998642 24
Q ss_pred eEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C---C------cccCCcc---ccccCCCCcceee
Q 012138 225 IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G---L------ARSGRML---ASDWEEVRPDMVI 290 (470)
Q Consensus 225 ~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g---~------g~~G~~~---~~~~~~~~pdi~s 290 (470)
+++|. +.++|..+|..+ +.+.++++.++|++||+.||.|.++. | | |+.+... .-+.+. ..|.++
T Consensus 171 ~~lV~~e~t~N~~GG~pv-s~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~-~aD~~~ 248 (450)
T TIGR02618 171 IPYICLAVTVNLAGGQPV-SMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMS-YADGCT 248 (450)
T ss_pred cCceEEEEecccCCCeeC-CHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhc-cCcEEE
Confidence 55555 444444678888 88889999999999999999999987 1 1 1111110 000011 125544
Q ss_pred cccccc-CCCcceeEEEe--cHHHHhhcCcC----CccCCCCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA--DKEVMLCIQPG----EHGSTFGG-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~--~~~~~~~~~~~----~~~~t~~~-~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~ 362 (470)
+| +.- ++. ++|.+++ +++++++.+.. ....++++ ..-.+.+...+|+..-+....++.....++|.+.|.
T Consensus 249 ~S-~~Kd~~~-~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~ 326 (450)
T TIGR02618 249 MS-GKKDCLV-NIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLK 326 (450)
T ss_pred Ee-eccCCCC-CCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 43 332 333 6565554 78888776543 11223333 222334444456555455566677777888888888
Q ss_pred HHHhhCCCceEEEeccceeEEEEecc--CCC---chhHHHHHHHHHHc-Cceec----------cC-----C--CCEEEE
Q 012138 363 KIQQQFPNYVKEVRGRGLFNAVEFDK--TAL---PVSAYDICLKMKER-GILAK----------PT-----H--DTIVRL 419 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~g~~~~~~~~~--~~~---~~~~~~~~~~l~~~-Gv~~~----------~~-----~--~~~iR~ 419 (470)
+.+ .| .+ .+..|..+.+.... +.. ...++.++-+|... ||-.. |. . -..+|+
T Consensus 327 ~~G--vp-v~--~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rl 401 (450)
T TIGR02618 327 AAG--VP-IV--EPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRL 401 (450)
T ss_pred HCC--Cc-cc--CCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeee
Confidence 862 22 21 23455555554432 111 23567777777655 76422 10 0 257999
Q ss_pred ecCC-CCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 420 TPPL-SISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 420 ~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
++|. +.|.++++..+++|..+.+ +...+.-
T Consensus 402 aiprr~yt~~h~~~v~~~~~~~~~-~~~~~~g 432 (450)
T TIGR02618 402 TIPRRVYTYAHMDVVADGIIKLYK-HRDDIRG 432 (450)
T ss_pred ccccccccHhHHHHHHHHHHHHHh-hHhhcCc
Confidence 8764 5699999999999999998 6655544
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=134.53 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=137.9
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....+++.++++.|...++.++||..|+..++..+.. .++ .|+..+..|.|..........
T Consensus 74 ~~nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~---------~g~-~iV~~~~~Y~gT~~~l~~~~~----- 138 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLP---------AGD-HIVATGDVYGGTLRILRKFLP----- 138 (409)
T ss_pred CCCCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcC---------CCC-cEEEeCCCcccHHHHHHHHHH-----
Confidence 45778899999999999999999999999999999987764 355 777777888664322211110
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
.|+ -...++...|++++++++++ ++++|++|.+.||+..+.+ +++|+++|+++|+++++|+..++..
T Consensus 139 -~~g---ie~~~vd~~~~~~~~~~i~~---~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p~-- 205 (409)
T KOG0053|consen 139 -KFG---GEGDFVDVDDLKKILKAIKE---NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSPY-- 205 (409)
T ss_pred -HhC---ceeeeechhhHHHHHHhhcc---CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCccc--
Confidence 111 11234433356666666665 8999999999999999998 9999999999999999999976431
Q ss_pred CCccccccCCCCccee--eccccccCCC-cceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 340 (470)
-++.+....||+ |.+|.++|.- .=.|.++.+ +++...+......-.+..+|..+......++.
T Consensus 206 ----~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt 272 (409)
T KOG0053|consen 206 ----NQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKT 272 (409)
T ss_pred ----ccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch
Confidence 133344446887 6779999632 134456664 77777776554445566788887776655543
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=116.34 Aligned_cols=317 Identities=20% Similarity=0.255 Sum_probs=197.2
Q ss_pred CCHHHHHHHHHHHHHccccCC-------CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSR-------AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSI 164 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~ 164 (470)
-.++.++++.+--+.++.... ....++..++-+.|++++|.|.+-+|+++-+|-.+++..+.. +
T Consensus 29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~---------~ 99 (382)
T COG1103 29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCK---------E 99 (382)
T ss_pred CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhcc---------C
Confidence 456777777666554432211 113566778888899999999999999999999998887765 3
Q ss_pred CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH----hcCCCeEEEEEccccCCCccc
Q 012138 165 DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK----ESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 165 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~----~~~~~~~~vi~epi~n~~G~~ 240 (470)
|+ .|+ .+...|-.+..+....+-.....+-..+ | .+.+ +++...+.|+ +.++.+++.++..+.+..|.+
T Consensus 100 gd-~vV-~D~~aHYttyvAAEragl~v~eVp~tg~-P-ey~i---~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl 172 (382)
T COG1103 100 GD-WVV-VDSLAHYTTYVAAERAGLNVAEVPNTGY-P-EYKI---TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL 172 (382)
T ss_pred CC-EEE-EcCcchHHHHHHHHhcCCeEEecCCCCC-C-ceEe---cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCc
Confidence 44 444 4444476666655444322221110000 1 1222 5555544443 334567778888889999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG 318 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~ 318 (470)
.+ .+++.++|+++|++++...+|+ .|++- .+...+.+|+++-| |+++..- |+|.+..+++..+.....
T Consensus 173 ~D----akkva~ic~e~gvPlllN~AYt----~Grmp-vs~ke~g~DFiVgSGHKsmAAs~-PiGvl~~~eE~ae~V~r~ 242 (382)
T COG1103 173 AD----AKKVAKICREYGVPLLLNCAYT----VGRMP-VSGKEIGADFIVGSGHKSMAASA-PIGVLAMSEEWAEIVLRR 242 (382)
T ss_pred hh----hHHHHHHHHHcCCceEeeccee----ecccc-ccccccCCCEEEecCccchhccC-CeeEEeehhHHHHHHHhh
Confidence 98 9999999999999999999998 33332 33345667887655 8888654 999999999887754211
Q ss_pred -----------CccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-eeEEE
Q 012138 319 -----------EHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAV 384 (470)
Q Consensus 319 -----------~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g-~~~~~ 384 (470)
..+-|-.+.|+.... |++-...+ ..|.+.+ +..+++.+.|++++.-- .+.. ++.. -+.-
T Consensus 243 Sg~~~~~KEvellGCT~rGapivTlm--ASfP~V~eRVkrWdeEv-~kaR~fv~elEkigg~~--qlG~-rPk~HdLm~- 315 (382)
T COG1103 243 SGRAFPKKEVELLGCTVRGAPIVTLM--ASFPHVVERVKRWDEEV-EKARWFVAELEKIGGVK--QLGE-RPKNHDLMK- 315 (382)
T ss_pred cccccccceeeeecccccCchHHHHH--hcCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHH--HhCC-CCcccceee-
Confidence 123333344443222 22322222 2233333 34567777787775210 1111 1211 1122
Q ss_pred EeccCCC-------chhHHHHHHHHHHcCce-eccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 385 EFDKTAL-------PVSAYDICLKMKERGIL-AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 385 ~~~~~~~-------~~~~~~~~~~l~~~Gv~-~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
|..+.. ......+.+.|+++||. +.|+...++.++. +..++|+++..+++++++++ +
T Consensus 316 -Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~e-k 380 (382)
T COG1103 316 -FETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLSV-YGLSWEQVEYVVDAFKEIAE-K 380 (382)
T ss_pred -ecCchHHHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEEe-ecCCHHHHHHHHHHHHHHHH-h
Confidence 222211 12344567889999987 6678788899985 57899999999999999987 5
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-12 Score=123.03 Aligned_cols=307 Identities=19% Similarity=0.193 Sum_probs=202.5
Q ss_pred CcHHHHHHHHhhhhCCCeEEec-CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 195 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 195 (470)
++..+|++||+++.|+|.|-+. ++|+++=.+.+.+++.| +..+|. ..++++|+.+ +.||....+..+.+-.
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~Y-He~rG~-~~R~~~LIP~-SAHGTNPASAam~G~~----- 180 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAY-HESRGE-GHRNICLIPD-SAHGTNPASAAMAGFK----- 180 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHH-HHHcCC-CcCcEEEeec-cccCCChhhHhhcCce-----
Confidence 4457899999999999987665 77999888888888876 333442 2344555555 4599877766665532
Q ss_pred CCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc--
Q 012138 196 FGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-- 268 (470)
Q Consensus 196 ~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-- 268 (470)
++.++-+ |+++|++++.+ +++++++.. .|.-|..- +.+++|.++.+++|.+|..|-+--
T Consensus 181 -------VV~V~~~~~G~VDlddLk~k~~~---~~AalMiTn-PsT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA 246 (496)
T COG1003 181 -------VVVVKCDENGNVDLDDLRAKAED---NLAALMITN-PSTLGVFE---EDIREICEIVHEAGGQVYYDGANLNA 246 (496)
T ss_pred -------EEEEecCCCCCccHHHHHHHhcc---ceeEEEecc-Ccccccch---hhHHHHHHHHHHcCCEEEecCcchhh
Confidence 2233322 89999999986 899999766 45567643 458999999999999999997644
Q ss_pred --CCcccCCc-cccccCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCc----CC---------------ccCCCC
Q 012138 269 --GLARSGRM-LASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQP----GE---------------HGSTFG 325 (470)
Q Consensus 269 --g~g~~G~~-~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~----~~---------------~~~t~~ 325 (470)
|..|.|.+ +...|+++. -||+-.-| ||- ..|-|.+++++...+.. .. ....|-
T Consensus 247 ~vG~~rPGd~G~DV~HlNLH---KTF~iPHGGGGP-G~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~ 322 (496)
T COG1003 247 IVGLARPGDMGFDVVHLNLH---KTFCIPHGGGGP-GAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPY 322 (496)
T ss_pred hhccccccccccceEEeecc---cccccCCCCCCC-CCCceehHhhccccCCCCcccCCCccccccCCCCccceeecccc
Confidence 45566654 233333332 13443333 454 66667777777665532 00 112233
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEe--ccC----CCchhHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAE---RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--DKT----ALPVSAY 396 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~---~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~--~~~----~~~~~~~ 396 (470)
+|......+++.+..|..+.+.+ ..--+++++..+|+.- |+ ... .+.. .+.-++ +.. ..+.+..
T Consensus 323 Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~---y~-~~y--~~~~-~~~HE~ild~r~l~~~~Gv~~~ 395 (496)
T COG1003 323 GSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY---YP-VPY--TGEN-RVAHECILDARPLKKETGVRAL 395 (496)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc---Cc-ccc--CCCC-cceeEEEeechHhHhhcCCcHH
Confidence 56666677777788777655443 4455788888888762 22 111 1221 222222 221 1257889
Q ss_pred HHHHHHHHcCceeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 012138 397 DICLKMKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAP 457 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~-----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~~~~~ 457 (470)
+++++|++.|+..-+- =.+.+.+-|.-.-+++++|++++++.++.+ +.++......+++|
T Consensus 396 DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~-Ea~~~~~~~~~~~P 460 (496)
T COG1003 396 DVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIRE-EADAVPAGPLKDNP 460 (496)
T ss_pred HHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHH-HHHhccCCccccCc
Confidence 9999999999986432 157889999999999999999999999999 88877654334443
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-12 Score=129.45 Aligned_cols=316 Identities=12% Similarity=0.046 Sum_probs=183.0
Q ss_pred CcHHHHHHHHhhhhCCCe---------EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 117 DKFPVFAERLTSMFGYDM---------VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~---------v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
.+..++.+||++++|.+. -++++|||+||..|+.++|.......+.....+.++..+..-|-+...+..+-
T Consensus 170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il 249 (539)
T PLN02590 170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG 249 (539)
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc
Confidence 445567788888887543 57899999999999999987533222211112245544544577666665554
Q ss_pred CCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 188 CDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+-........+... +...+ |+++|+++|++. +..+-+|+.+--...+|.+-| +++|.++|++||++|++
T Consensus 250 Glg~~~vr~Vp~d~~~~~~m---d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHV 322 (539)
T PLN02590 250 GIHEENIRLLKTDSSTNYGM---PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHV 322 (539)
T ss_pred CCCcccEEEEeCCCCCCCcC---CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEE
Confidence 42211000011110 11223 899999999752 223455666555667999998 99999999999999999
Q ss_pred eccccCCcccCCccccccCCC-Ccceeecc--ccccCCCcceeEEEecHH--HHhhcCcC---C-c----------cC--
Q 012138 264 DEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQPG---E-H----------GS-- 322 (470)
Q Consensus 264 Dev~~g~g~~G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~~~~--~~~~~~~~---~-~----------~~-- 322 (470)
|.+|+|+...-+.+..-..++ ..|-+++. |.+.-.+ ..|+++.+.. +.+.+... . . ..
T Consensus 323 DaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~-~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~ 401 (539)
T PLN02590 323 DAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ-TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDW 401 (539)
T ss_pred ecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc-CEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCcccc
Confidence 999998532211111111233 24655444 8888787 8898887643 22222100 0 0 00
Q ss_pred CC-CCCHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCC-----c
Q 012138 323 TF-GGNPLASAVAIASLDVIRDEKLAERS---AHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTAL-----P 392 (470)
Q Consensus 323 t~-~~~~~~~aaa~a~l~~~~~~~~~~~~---~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~-----~ 392 (470)
+. .+-.+.....+.+|+.+..+.+.+.+ -++++++.+.|++. | .+..+ ++.=.++.|.+..... .
T Consensus 402 ~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~----~-~fel~~~~~l~iVcFr~~~~~~~~~~~~ 476 (539)
T PLN02590 402 QISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD----P-SFEVVTTRYFSLVCFRLAPVDGDEDQCN 476 (539)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEecCCceEEEEEEecCCCCCHHHHH
Confidence 11 12234455566667766665555544 44566666655442 2 23322 2233334444432110 1
Q ss_pred hhHHHHHHHHHHcCcee-ccC---CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 393 VSAYDICLKMKERGILA-KPT---HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 393 ~~~~~~~~~l~~~Gv~~-~~~---~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
....++.++|.+.|... .+. +..++|+++ ...+++++|+.+++.|.+... ++-
T Consensus 477 ~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~-~~~ 534 (539)
T PLN02590 477 ERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS-KFT 534 (539)
T ss_pred HHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-Hhc
Confidence 12346777777777553 332 356899976 456789999999999999887 653
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=122.50 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=184.5
Q ss_pred CHHHHHHHHHHHHHccccCCCC-----CCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHHHhchhcccCC
Q 012138 93 HPKIMKALQEQAEKLTLSSRAF-----YNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
+.++++...+.++..+-+.+.| ..-.+..+++.+.++-| .+.|++|.|++.|+...|+++.+
T Consensus 88 p~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~--------- 158 (475)
T KOG0258|consen 88 PTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA--------- 158 (475)
T ss_pred CHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc---------
Confidence 3455666666665543222222 23447778888877765 35799999999999999998876
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC--CC-eEEEEEccccCCCccc
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG--DQ-IAGFLFEPIQGEAGVI 240 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~--~~-~~~vi~epi~n~~G~~ 240 (470)
..++-|++.-|-|.-.+.....+++. ..+|----...|.. |.++|++.+++.. -+ .+++++|| .||||.+
T Consensus 159 ~~~~GvliPiPQYPLYsAti~l~~~~---~v~YyLdEe~~W~l---d~~el~~~~~eA~k~i~~r~lvvINP-GNPTGqv 231 (475)
T KOG0258|consen 159 GKKTGVLIPIPQYPLYSATISLLGGT---QVPYYLDEESNWSL---DVAELERSVDEARKGINPRALVVINP-GNPTGQV 231 (475)
T ss_pred CCCCceEeecCCCchhHHHHHHhCCc---ccceeeccccCCCC---CHHHHHHHHHHHhccCCceEEEEECC-CCccchh
Confidence 23446777777775433322222221 00000000123444 8999999887753 23 35667999 9999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccC-CcccC-Ccccccc----CC-CCcc------eeeccccccC--CCcceeEE
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSG-RMLASDW----EE-VRPD------MVILGKALGG--GVIPVSAV 305 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g-~g~~G-~~~~~~~----~~-~~pd------i~s~sK~l~g--G~~~ig~v 305 (470)
. +++-+++|.++|.++|++|+.||||.. ....+ +++++.. .+ ..|| +-+.||++.| |. |-|++
T Consensus 232 l-s~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~-RGGYm 309 (475)
T KOG0258|consen 232 L-SEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQ-RGGYM 309 (475)
T ss_pred h-cHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecc-cCCee
Confidence 9 999999999999999999999999995 33344 4433321 12 1232 2266788663 54 55554
Q ss_pred E---ecHHHHhhcCcCCccCCCCCCHHHHHHH----------HHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012138 306 L---ADKEVMLCIQPGEHGSTFGGNPLASAVA----------IASLDV--IRDEKLAERSAHLGEELRQHLFKIQQQFPN 370 (470)
Q Consensus 306 ~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa----------~a~l~~--~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~ 370 (470)
= ..+++.+.+.... ......+..+++.. ....+. -+++.+.+.++.++..+.+.++.+ +
T Consensus 310 Ev~n~~prv~~qi~Kl~-si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~-----~ 383 (475)
T KOG0258|consen 310 ESLNRDPRVKQQIKKLA-SIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL-----E 383 (475)
T ss_pred ecccCChhHHHHHHHHH-hhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc-----C
Confidence 3 2333333221110 00000000111100 001111 123567777777777777777765 4
Q ss_pred ceEEEeccceeEEEEecc-CCC--------ch-hHHHHHHHHHHc-CceeccCC-----C--CEEEEecCCCCCHHHHHH
Q 012138 371 YVKEVRGRGLFNAVEFDK-TAL--------PV-SAYDICLKMKER-GILAKPTH-----D--TIVRLTPPLSISSNELQE 432 (470)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~-~~~--------~~-~~~~~~~~l~~~-Gv~~~~~~-----~--~~iR~~~~~~~t~e~i~~ 432 (470)
.+.+-+.+|.|+.+.-.. +.. +. .....|.+|++. ||.+.|++ + -++|..+ . ... + +
T Consensus 384 gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~Ti--L-p~~-~-~ 458 (475)
T KOG0258|consen 384 GISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTI--L-PPG-L-E 458 (475)
T ss_pred ceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEee--c-Cch-h-H
Confidence 688889999999984322 110 11 122345677776 99999884 2 3466552 2 122 3 5
Q ss_pred HHHHHHHHHh
Q 012138 433 GSKALHDVLE 442 (470)
Q Consensus 433 ~~~~l~~~l~ 442 (470)
.++++.++-+
T Consensus 459 ~i~~~~~fH~ 468 (475)
T KOG0258|consen 459 IIEKFKKFHA 468 (475)
T ss_pred HHHHHHHHHH
Confidence 5666655444
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-12 Score=118.92 Aligned_cols=318 Identities=18% Similarity=0.221 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHH-cccc--CCCCC--C---CcHHHHH-HHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEK-LTLS--SRAFY--N---DKFPVFA-ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~--~~~~~--~---~~~~~l~-~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
..|.|.++.-..+.+ +..+ ...|| . +..+.++ ++..+++|.+.+ +=-.||++||.+++.++.+
T Consensus 38 ~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~------- 110 (413)
T COG0112 38 TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQ------- 110 (413)
T ss_pred CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcC-------
Confidence 357888887766643 3222 11222 1 2233333 345567788765 3346899999999988876
Q ss_pred CCCCCcEEEEEccCccccccc---hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G 238 (470)
||+ .|+..+-+ ||..+. ....++.- ++...-++.++...+ |.|++++...++ ++++||+=. +---
T Consensus 111 --pGD-timgm~l~-~GGHltHg~~v~~sG~~-~~~v~Y~vd~et~~I---DyD~~~k~a~e~--kPK~ii~G~--SaY~ 178 (413)
T COG0112 111 --PGD-TIMGLDLS-HGGHLTHGSPVNFSGKL-FNVVSYGVDPETGLI---DYDEVEKLAKEV--KPKLIIAGG--SAYS 178 (413)
T ss_pred --CCC-eEecccCC-CCCcccCCCCCCcccee-EEeEecccccccCcc---CHHHHHHHHHHh--CCCEEEECc--cccc
Confidence 666 77776666 443222 12223321 211111222233334 899999999887 778888632 2233
Q ss_pred cccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEec-HHHHhh
Q 012138 239 VIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLC 314 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~-~~~~~~ 314 (470)
...| +++++++|++.|++|++|-+|- |+.-.|.+- +... ..|++|-+ |+|-|. |-|.|+++ +++.++
T Consensus 179 r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p--~P~~-~AdvVTtTTHKTlrGP--rGG~Il~~~eel~kk 249 (413)
T COG0112 179 RPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGVHP--NPLP-HADVVTTTTHKTLRGP--RGGIILTNDEELAKK 249 (413)
T ss_pred cccC----HHHHHHHHHHhCceEEehHHHHHHHHhcccCC--CCCC-ccceEeCCcccCCCCC--CceEEEeccHHHHHH
Confidence 4444 9999999999999999999998 665555432 1122 24777544 888765 77778887 488888
Q ss_pred cCcCCccCCCCCCHHH-HHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEecc
Q 012138 315 IQPGEHGSTFGGNPLA-SAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDK 388 (470)
Q Consensus 315 ~~~~~~~~t~~~~~~~-~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~ 388 (470)
+...-.....+++-+- +|+-..++....+ +++.+++.++++.|.+.|.+.+ +..+. ....++.+++..
T Consensus 250 in~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G------~~vvsGgTdnHl~lVDl~~ 323 (413)
T COG0112 250 INSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERG------FKVVSGGTDNHLVLVDLRS 323 (413)
T ss_pred hhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcC------CeEecCCccceEEEEEccc
Confidence 8654444444433332 2222234444433 4566777778888888887743 33332 234456666552
Q ss_pred CCCchhHHHHHHHHHHcCceec----cC------CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhcccC
Q 012138 389 TALPVSAYDICLKMKERGILAK----PT------HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~----~~------~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
. +....+....|.+.||.+. |. .+.-||+..|.. +.++|+++..+.|.+++. ...
T Consensus 324 ~--~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~-~~~ 392 (413)
T COG0112 324 K--GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLD-GLK 392 (413)
T ss_pred C--CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHh-ccc
Confidence 2 2356666667777799875 22 255689976643 568999999999999998 654
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-11 Score=121.71 Aligned_cols=284 Identities=13% Similarity=0.035 Sum_probs=177.8
Q ss_pred cHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 118 KFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
...++-+|++++++.+ .-++|+||||||..|+.++|.+. .+ .++..+-.-|-+...+..+-+-....
T Consensus 134 ~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~--------~~-~vvy~S~~aH~Sv~KAa~llgi~~~~ 204 (470)
T PLN02263 134 FEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF--------PD-GILYASRESHYSVFKAARMYRMECVK 204 (470)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc--------CC-cEEEEcCCccHHHHHHHHhcCCcceE
Confidence 3456777888888753 25889999999999999999842 12 24444444477766665554432111
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc-----EEEEecccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI-----LMIADEIQS 268 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi-----llI~Dev~~ 268 (470)
. |.. +...+ |+++|+++|.+...++.+|+.+-...++|.+-| +++|.++|++||+ +|++|.+++
T Consensus 205 V---p~d-~~g~m---D~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~G 273 (470)
T PLN02263 205 V---DTL-VSGEI---DCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALF 273 (470)
T ss_pred e---ccC-CCCcC---cHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccch
Confidence 1 111 11223 899999999874334556666665778999998 9999999999997 999999999
Q ss_pred CCcc----cCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC-----CccCCCCC--CHHHHHHHH
Q 012138 269 GLAR----SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFGG--NPLASAVAI 335 (470)
Q Consensus 269 g~g~----~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~--~~~~~aaa~ 335 (470)
|+.. .-..+.+. ...|-++++ |.+...+ +.|+++.++...+.+... ....+..+ +....+.++
T Consensus 274 G~~lPf~~~~~~~df~---~~vDSIsvD~HK~l~~P~-~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW 349 (470)
T PLN02263 274 GLMMPFVKRAPKVTFK---KPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 349 (470)
T ss_pred hhHhhhcccccccCCC---cCccEEEECCccccCCCc-CEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHH
Confidence 8532 11112111 123555444 8887777 999999887665444221 01112222 222345566
Q ss_pred HHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC
Q 012138 336 ASLDVIRDEKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 336 a~l~~~~~~~~~~~---~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
.+|+.+..+++.+. ..++++++.+.|++.+ ......+....+.+. .+. + .+..+|..+.+.
T Consensus 350 ~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g-----~~~~~~p~s~~V~f~--~p~---~------~~~~~gW~L~~~ 413 (470)
T PLN02263 350 YTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAG-----ISAMLNELSSTVVFE--RPK---D------EEFVRRWQLACQ 413 (470)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-----CeEEeCCCceEEEEe--cCc---h------HHhhcceEEccC
Confidence 67776665554444 4456677777776642 222334455544443 221 1 123467766653
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 413 HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 413 ~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.++++....++.+.++++++.|++...
T Consensus 414 -~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 414 -GNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred -CCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 46789987777789999999999998877
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=116.49 Aligned_cols=303 Identities=15% Similarity=0.184 Sum_probs=157.7
Q ss_pred CcHHHHHHHHhhhhCC--CeEEecCChhHHH-HHHHHHHHHhchhc--cc-CCCCCcEEEEEccCccccccchhcccCCc
Q 012138 117 DKFPVFAERLTSMFGY--DMVLPMNTGAEGV-ETALKLARKWGYVK--KK-FSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~--~~v~~~~sGteA~-~~al~~~~~~~~~~--~~-~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
+-..++.+.++++++. ++++...+.+-.+ .-++..+..++... +. ...++-++++..|+|-.+.......+-
T Consensus 69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~Gi-- 146 (425)
T PF12897_consen 69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFGI-- 146 (425)
T ss_dssp S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT---
T ss_pred CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhCc--
Confidence 3457788888888864 5676654444333 22333332222110 00 012355788899998222111111110
Q ss_pred ccccCCCCCCCCeeeecCC----CHHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHH-HHhcCcEEEEe
Q 012138 191 EAIRGFGPLLPGHLKVDFG----DITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDL-CSKYNILMIAD 264 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~----d~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l-~~~~gillI~D 264 (470)
+.+.+|.+ |++.+|+++.+. +.++.|.|-| ..||+|.++ +.+..++|+.+ +...+..|+.|
T Consensus 147 -----------emi~VpM~~dGPDmD~Ve~LV~~D-~svKGiWcVP~ySNPtG~ty-Sde~vrrlA~m~~AA~DFRI~WD 213 (425)
T PF12897_consen 147 -----------EMIPVPMTEDGPDMDMVEELVAED-PSVKGIWCVPKYSNPTGITY-SDEVVRRLAAMKTAAPDFRIFWD 213 (425)
T ss_dssp -----------EEEEEEEETTEE-HHHHHHHTHTS-TTEEEEEE-SSS-TTT------HHHHHHHHHS--SSTT-EEEEE
T ss_pred -----------EEEecCCCCCCCCHHHHHHHHhcC-CccceEEeCCCccCCCCccC-CHHHHHHHhcCCcCCcCeEEEee
Confidence 11233332 899999998643 4799999999 789999999 99999999998 44689999999
Q ss_pred cccc--CCcccCCc------c-ccccCCCCcce----eeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHH
Q 012138 265 EIQS--GLARSGRM------L-ASDWEEVRPDM----VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLAS 331 (470)
Q Consensus 265 ev~~--g~g~~G~~------~-~~~~~~~~pdi----~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~ 331 (470)
++|+ .+...... + .+...| .||. .|+||---+|- .++++.++++-++.+.......+.+.+-+.+
T Consensus 214 NAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~Ga-Gva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQ 291 (425)
T PF12897_consen 214 NAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPGA-GVAFFAASEANLAWIKKHLSVQTIGPDKVNQ 291 (425)
T ss_dssp -TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TTS-S-EEEEE-HHHHHHHHHHHHHH-S---HHHH
T ss_pred cCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCCc-ceeeeecCHHHHHHHHHHhcCceeCccHHHH
Confidence 9998 23111110 0 011122 4553 38889765665 8999999998888776555555666666666
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHhhCC---CceEEEeccce-eEEEEeccCCCchhHHHHHHHHH
Q 012138 332 AVAIASLDVIRDEKLAERSAHLGEELRQH----LFKIQQQFP---NYVKEVRGRGL-FNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 332 aaa~a~l~~~~~~~~~~~~~~~~~~l~~~----L~~l~~~~p---~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
..-...++..+ .++.++.++.++.++-+ ++.+..++. +...-..+.|. |+.+.... . .+.++++.++
T Consensus 292 LRHvrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~-G---~AkrvV~lak 366 (425)
T PF12897_consen 292 LRHVRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLD-G---TAKRVVELAK 366 (425)
T ss_dssp HHHHHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEEST-T----HHHHHHHHH
T ss_pred HHHHHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCC-C---hHHHHHHHHH
Confidence 65443343222 14555555544444433 333333322 23333445555 44454433 2 7899999999
Q ss_pred HcCceeccCC----------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 404 ERGILAKPTH----------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 404 ~~Gv~~~~~~----------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.||.+.|.+ +..||++|++ -+.||++.+++.+.-+++
T Consensus 367 eAGV~LT~AGAtfPyg~DP~D~nIRiAPS~-P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 367 EAGVALTPAGATFPYGKDPRDSNIRIAPSY-PSLEELETAMDVFATCVK 414 (425)
T ss_dssp HTTEE---TTTTSGGG--TTS-EEEE--SS-S-HHHHHHHHHHHHHHHH
T ss_pred HhCceeCCCCCCCCCCCCCCCCcEEecCCC-CCHHHHHHHHHHHHHHHH
Confidence 9999988642 6789999875 688999999999988775
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-13 Score=116.91 Aligned_cols=158 Identities=23% Similarity=0.338 Sum_probs=109.9
Q ss_pred HHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 119 FPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+.++++++++++ +.+.+++++||++|+..+++.+.. ++ +.|++..+.|++.........+..
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~---------~~-~~v~~~~~~~~~~~~~~~~~~g~~------ 65 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG---------PG-DEVIVDANGHGSRYWVAAELAGAK------ 65 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC---------CC-CEEEEeecccceehhhHHHhcCCE------
Confidence 367888999999 888999999999999999998754 23 478888888776652222222211
Q ss_pred CCCCCCeeeecCC-------CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 197 GPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 197 ~~~~~~~~~~~~~-------d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
...++.+ +.+.+++... ..+++++++++.++++|...| +++|.++|+++|+++|+|++|.+
T Consensus 66 ------~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~ 133 (170)
T cd01494 66 ------PVPVPVDDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAG 133 (170)
T ss_pred ------EEEeccCCCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEeccccc
Confidence 1111111 1224433332 247899999988999999997 79999999999999999999996
Q ss_pred CcccCCccccccCCCCcceeecc--ccccCCCcceeEEEec
Q 012138 270 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD 308 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~ 308 (470)
+......+ +.....+|+++.| |.+++ . ++|+++++
T Consensus 134 ~~~~~~~~--~~~~~~~d~~~~s~~K~~~~-~-~~G~l~~~ 170 (170)
T cd01494 134 GASPAPGV--LIPEGGADVVTFSLHKNLGG-E-GGGVVIVK 170 (170)
T ss_pred cccccccc--ccccccCCEEEEEcccccCC-C-ceEEEEeC
Confidence 64433221 2222346887666 99987 5 88988764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.1e-11 Score=118.26 Aligned_cols=286 Identities=13% Similarity=0.025 Sum_probs=165.9
Q ss_pred HHHhhhhCCCe----E-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh--------cccCCc
Q 012138 124 ERLTSMFGYDM----V-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--------SMSCDN 190 (470)
Q Consensus 124 ~~l~~~~~~~~----v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~--------~~~~~~ 190 (470)
++..++++.+. + +-.-||+.||.+++..+.+ ||| .|+..+..+-|+..... ..++.
T Consensus 201 era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~---------PGD-~IL~ldl~~GGHlshg~~~~~g~~vs~sG~- 269 (586)
T PLN02271 201 ERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLL---------PGD-RIMGLDSPSGGHMSHGYYTPGGKKVSGASI- 269 (586)
T ss_pred HHHHHHhCCcccccccceeeccHHHHHHHHHHHhcC---------CCC-EEEEecCCCCCchhcccccccccccccccc-
Confidence 34445567443 1 2233999999999987754 666 77777666433222111 11110
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g 269 (470)
.++...-++.+....+ |++++++..... ++++|++....++ ...| +++++++|+++|++|++|.+|. |
T Consensus 270 ~~~~vpY~~d~~~g~I---Dyd~lek~a~~~--rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aG 338 (586)
T PLN02271 270 FFESLPYKVNPQTGYI---DYDKLEEKALDF--RPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISG 338 (586)
T ss_pred eEEEEEcccccccCcc---CHHHHHHHhhhc--CCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECccccc
Confidence 0000000000111112 889999855443 8999999775555 5666 9999999999999999999999 6
Q ss_pred CcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH--------------------HHhhcCcCCccCCCCC-
Q 012138 270 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE--------------------VMLCIQPGEHGSTFGG- 326 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~--------------------~~~~~~~~~~~~t~~~- 326 (470)
+-..|... .... ..|+++++ |+|.|. +-|.++.+++ +.+.+.........++
T Consensus 339 LIa~g~~~--sP~~-~aDvvt~TTHKtLrGP--rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGp 413 (586)
T PLN02271 339 LVAAKECV--NPFD-YCDIVTSTTHKSLRGP--RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGP 413 (586)
T ss_pred ccccCcCC--CCCc-CCcEEEeCCcccCCCC--CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccCh
Confidence 53333211 1111 24877554 998865 3366777653 3333322112211122
Q ss_pred CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH
Q 012138 327 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
....+++...+++.+.. ..+.+++.++++.|.+.|.+.+-+ ++.. .....++++.+..- +.+...+.+.|.
T Consensus 414 hn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~---vv~g-gTdnHlvLvDl~~~--g~~G~~ae~~Le 487 (586)
T PLN02271 414 HNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCR---LVTG-GTDNHLLLWDLTTL--GLTGKNYEKVCE 487 (586)
T ss_pred hHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCe---EeeC-CCCcceeeecCccc--CCCHHHHHHHHH
Confidence 22234444455665543 457777788888888888774322 2221 12344555555332 235666777777
Q ss_pred HcCceec----cC-----CCCEEEEecCCC----CCHHHHHHHHHHHHHHHh
Q 012138 404 ERGILAK----PT-----HDTIVRLTPPLS----ISSNELQEGSKALHDVLE 442 (470)
Q Consensus 404 ~~Gv~~~----~~-----~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~ 442 (470)
+.||.+. |+ .+..+||..+.. +.++|++++.+.|.++++
T Consensus 488 ~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 488 MCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred HcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 7799874 32 245689976543 567999999999998887
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-12 Score=123.23 Aligned_cols=293 Identities=16% Similarity=0.160 Sum_probs=166.5
Q ss_pred CCCcHHHHHHHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccc
Q 012138 115 YNDKFPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEA 192 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 192 (470)
+.....+.++.+++.+|.++.+| +||.|.+|.+++.++.+ +|+ .|++..++ |-+...++.+++. +.|
T Consensus 64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~---------~gd-~VLv~RN~-HkSv~~alil~ga~Pvy 132 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCR---------PGD-KVLVDRNC-HKSVYNALILSGAIPVY 132 (417)
T ss_dssp TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTT---------TTC-EEEEETT---HHHHHHHHHHTEEEEE
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcC---------CCC-EEEEcCCc-HHHHHHHHHHcCCeEEE
Confidence 34557888899999999988655 56667778888877765 455 77777777 9998888777764 333
Q ss_pred ccCCCCCCCCeeeecCC--CHHHHHHHHHhcCCCe--EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 193 IRGFGPLLPGHLKVDFG--DITALEKIFKESGDQI--AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~--d~~~Le~~l~~~~~~~--~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
-.+-.....-...++.. +.+.++++|+++++.. +++++.. .+-.|.+.+ +++|.++|++++++|++||+|.
T Consensus 133 i~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~-PTY~Gv~~d----i~~I~~~~h~~~~~llvDEAhG 207 (417)
T PF01276_consen 133 IPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTS-PTYYGVCYD----IKEIAEICHKHGIPLLVDEAHG 207 (417)
T ss_dssp EEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEES-S-TTSEEE-----HHHHHHHHCCTECEEEEE-TT-
T ss_pred ecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeC-CCCCeEEEC----HHHHHHHhcccCCEEEEEcccc
Confidence 21110000001122100 2489999999875432 2355444 355799998 9999999999999999999998
Q ss_pred C-CcccCCccccccCCCCcc-------eeecc--ccccCCCcceeEEEecHHH---HhhcCc-CCccCCCCCCHHHHHHH
Q 012138 269 G-LARSGRMLASDWEEVRPD-------MVILG--KALGGGVIPVSAVLADKEV---MLCIQP-GEHGSTFGGNPLASAVA 334 (470)
Q Consensus 269 g-~g~~G~~~~~~~~~~~pd-------i~s~s--K~l~gG~~~ig~v~~~~~~---~~~~~~-~~~~~t~~~~~~~~aaa 334 (470)
+ |++. .+. .+......| +++-| |.+++ +...+++-.+.+. .+.++. .....|-+++-+.++..
T Consensus 208 ah~~F~-~lp-~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASl 284 (417)
T PF01276_consen 208 AHFGFH-PLP-RSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASL 284 (417)
T ss_dssp TTGGCS-GGG-TTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHH
T ss_pred ccccCC-CCc-cchhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 5 3333 222 122333345 66444 77663 3134445544331 122221 12344556778888888
Q ss_pred HHHHHHH-hh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE-----EEeccce------------------eEE-----
Q 012138 335 IASLDVI-RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK-----EVRGRGL------------------FNA----- 383 (470)
Q Consensus 335 ~a~l~~~-~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-----~~~~~g~------------------~~~----- 383 (470)
..+.+.| .. +.+.++..++...+++.|+++... ..+. .+.+.+. .+.
T Consensus 285 D~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K 362 (417)
T PF01276_consen 285 DVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDI--WGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTK 362 (417)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT---SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCC--ceEecCCccccCCccccccCccccchhchhcccCccccCCcE
Confidence 8887877 33 568888888899999998653221 1111 1222220 111
Q ss_pred --EEec---c----CCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHH
Q 012138 384 --VEFD---K----TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSN 428 (470)
Q Consensus 384 --~~~~---~----~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e 428 (470)
+.++ . ...+.++..+.+.|+++||.+--.+.+.+-+.++...|++
T Consensus 363 ~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 363 LTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE 416 (417)
T ss_dssp EEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred EEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence 1110 0 1125678889999999999987777777777766666654
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-11 Score=118.92 Aligned_cols=323 Identities=10% Similarity=0.061 Sum_probs=194.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--------cCCC-CCCCcHHHHHHHHhhhhCCC----eEEecCChh
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--------SSRA-FYNDKFPVFAERLTSMFGYD----MVLPMNTGA 142 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--------~~~~-~~~~~~~~l~~~l~~~~~~~----~v~~~~sGt 142 (470)
+.+.|..|... -+++|++++.+.+-.+.. +.+. -..+...+..+.|.++++.+ -+++..|||
T Consensus 7 ~~~~f~pGP~~-----lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt 81 (365)
T PLN02452 7 RVFNFSAGPAT-----LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAS 81 (365)
T ss_pred ceEeeeCCCCC-----CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccH
Confidence 34578777554 459999998887643221 1110 01344567777888888642 356668899
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~ 221 (470)
.++++++..+.. ++++..++..+.| |.... ....-+...... .. +........+++++ +.
T Consensus 82 ~~~ea~~~nl~~---------~~~~~l~~~~G~f-g~r~~~~a~~~g~~~~~~-~~---~~~~~~~~~~~~~~----~~- 142 (365)
T PLN02452 82 TQFAAIPLNLCK---------PGDKADFVVTGSW-SKKAAKEAKKYCKTNVIA-SG---KDEKYTKIPSVSEW----EL- 142 (365)
T ss_pred HHHHHHHHhcCC---------CCCeEEEEECCHH-HHHHHHHHHHhCCCcEEE-ec---CCCCCCCCCChHHc----CC-
Confidence 999999987754 4554555556555 32221 111111100000 00 00000001145543 21
Q ss_pred CCCeEEEEEccccCCCccc-cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCc
Q 012138 222 GDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~-~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~ 300 (470)
..+.+.|.+.+....+|+. .+ ++++. ++++|+|.+++ + .+.....+.+++ |+.+.-|.+| ..
T Consensus 143 ~~~~~~v~~~hnETstGv~~~~----~~~i~------~~~lvVDa~Ss-~--g~~pidv~~~~v--~~~saqK~lG-P~- 205 (365)
T PLN02452 143 TPDAKFVHICANETIHGVEFKD----YPDVG------NVPLVADMSSN-F--LSKPVDVSKYGV--IYAGAQKNVG-PS- 205 (365)
T ss_pred CCCCcEEEECCCCCCCcEecCc----ccccC------CCeEEEECCcc-c--cCcccCHHHcCE--EEEecccccC-CC-
Confidence 1256666666645568985 43 44442 38999999998 2 233344555665 6667779896 33
Q ss_pred ceeEEEecHHHHhhcCcC-----------CccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 012138 301 PVSAVLADKEVMLCIQPG-----------EHGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~-----------~~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l 364 (470)
.+|.+++++++++..... ...+++ +++...+.+..++|+++.+ +.+.++.+++.+++++.|++.
T Consensus 206 Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~ 285 (365)
T PLN02452 206 GVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDES 285 (365)
T ss_pred CeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999998765432 122333 5677788888899998876 356777778888888888764
Q ss_pred HhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
..-+...+..-......+.+.+.... ...+|.+.+.++|+...+++ -+.+|++.--.++.++++.+++.++++-+
T Consensus 286 ~G~y~~~~~~~~rs~~~vsF~~~~~~---~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 286 NGFYVCPVEKSVRSLMNVPFTLGGSE---LEAEFVKEAAKAGMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred CCcccCCCChHHhCCeEEEEEcCCch---hHHHHHHHHHHCCCcccCCccccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 21110011000012234444444332 67889999999999998875 22399998888999999999999998866
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.7e-11 Score=121.67 Aligned_cols=301 Identities=16% Similarity=0.084 Sum_probs=168.0
Q ss_pred CcHHHHHHHHhhhhC-C--------------CeEEecCChhHHHHHHHHHHHHhchhcc---------cCC------CCC
Q 012138 117 DKFPVFAERLTSMFG-Y--------------DMVLPMNTGAEGVETALKLARKWGYVKK---------KFS------IDE 166 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~-~--------------~~v~~~~sGteA~~~al~~~~~~~~~~~---------~~~------~g~ 166 (470)
++...+.+|++++++ . ..-++|+|||+||..|+.++|....... |.. ..+
T Consensus 129 ~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~ 208 (522)
T TIGR03799 129 PLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYD 208 (522)
T ss_pred HHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCC
Confidence 344556667777653 1 1257899999999999999987532111 000 001
Q ss_pred cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHh---cCCCeEEEEEccccCCCc
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKE---SGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~---~~~~~~~vi~epi~n~~G 238 (470)
..+|.....-|.+...+....+.... .+..+|.+ |+++|+++|++ .+.++.+|+.....+.+|
T Consensus 209 ~~~v~~S~~~H~S~~kaa~~lglg~~---------~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tG 279 (522)
T TIGR03799 209 GLAILVSERGHYSLGKAADVLGIGRD---------NLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETG 279 (522)
T ss_pred ceEEEECCCchHHHHHHHHHcCCCcc---------cEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCC
Confidence 23344444447666554433332110 11222221 89999999974 222333444334456899
Q ss_pred cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Ccceeecc--ccccCCCcceeEEEec-HHHHhh
Q 012138 239 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLAD-KEVMLC 314 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~~-~~~~~~ 314 (470)
.+.| +++|.++|++||+++++|.+|+|....-.-+.....++ ..|.++++ |.+.+.+ .+|+++.+ +++.+.
T Consensus 280 aiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~-g~G~llvr~~~~~~~ 354 (522)
T TIGR03799 280 NIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPM-GAGMVLFKDPALMSA 354 (522)
T ss_pred CcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCc-ccEEEEEeCHHHHHH
Confidence 9999 99999999999999999999986321111000011243 46888777 8787776 88998875 455554
Q ss_pred cCcC-----Ccc------CCCCCC-HHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-ecc
Q 012138 315 IQPG-----EHG------STFGGN-PLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGR 378 (470)
Q Consensus 315 ~~~~-----~~~------~t~~~~-~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~ 378 (470)
+... ..+ .++.++ +.......++|+.+.. +.+.++..++++++.+.|++. | .+..+ .+.
T Consensus 355 ~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~----~-~~el~~~p~ 429 (522)
T TIGR03799 355 IEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ----P-DFELVTEPE 429 (522)
T ss_pred hccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----C-CeEEecCCC
Confidence 4331 000 112121 1222246677777665 446666666777777777653 2 22222 222
Q ss_pred ceeEEEEeccCCC-------------------chhHHHHHHHHHHcCceecc-C----------CCCEEEEec-CCCCCH
Q 012138 379 GLFNAVEFDKTAL-------------------PVSAYDICLKMKERGILAKP-T----------HDTIVRLTP-PLSISS 427 (470)
Q Consensus 379 g~~~~~~~~~~~~-------------------~~~~~~~~~~l~~~Gv~~~~-~----------~~~~iR~~~-~~~~t~ 427 (470)
-.++.+.+..... ..-...+.+++.+.|..... . +..++|+++ ...+|+
T Consensus 430 l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~ 509 (522)
T TIGR03799 430 LCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTH 509 (522)
T ss_pred ccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCH
Confidence 3344444322110 00123566777778765321 1 124689976 445788
Q ss_pred HHHHHHHHH
Q 012138 428 NELQEGSKA 436 (470)
Q Consensus 428 e~i~~~~~~ 436 (470)
++|+.+++.
T Consensus 510 ~~i~~~l~~ 518 (522)
T TIGR03799 510 EILQDILDE 518 (522)
T ss_pred HHHHHHHHH
Confidence 888887654
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=120.93 Aligned_cols=281 Identities=19% Similarity=0.195 Sum_probs=155.6
Q ss_pred HHHhhhhCCC----eE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc------cCC-cc
Q 012138 124 ERLTSMFGYD----MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM------SCD-NE 191 (470)
Q Consensus 124 ~~l~~~~~~~----~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~------~~~-~~ 191 (470)
++..++++.+ .+ +=..||+.|+.+++.++.+ ||| .|+.++.. ||..+..-.. +.. ..
T Consensus 73 ~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~---------pGD-~Im~l~l~-~GGHlshg~~~~~~~~~~~~~~ 141 (399)
T PF00464_consen 73 ERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLK---------PGD-TIMGLSLP-HGGHLSHGSSVNFKKISASGLY 141 (399)
T ss_dssp HHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT----------TT--EEEEEEGG-GT--GGGT-TTSHSBSSHHHHH
T ss_pred HHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHh---------hcC-cEEecChh-hcccccccccccccccccccce
Confidence 4455677877 54 4457899999999988876 566 77777666 3332211000 000 00
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~ 270 (470)
+....-++.++...+ |.+++++.++++ ++++|++..-. .-..+| +++++++|++.|++|++|-+|. |+
T Consensus 142 ~~~~~y~~d~~~~~I---D~d~l~~~a~~~--kPklIi~G~S~--y~~~~d----~~~~reIad~vga~l~~D~sH~~GL 210 (399)
T PF00464_consen 142 FESVPYPVDPDTGLI---DYDELEKLAKEH--KPKLIICGASS--YPRPID----FKRFREIADEVGAYLMADISHIAGL 210 (399)
T ss_dssp SEEEEEEB-TTTSSB----HHHHHHHHHHH----SEEEEE-SS--TSS-------HHHHHHHHHHTT-EEEEE-TTTHHH
T ss_pred EEEEeeeeecCCCeE---CHHHHHHHHhhc--CCCEEEECchh--ccCccC----HHHHHHHHHhcCcEEEecccccccc
Confidence 100000111222333 899999999987 78889987622 122333 8999999999999999999998 66
Q ss_pred cccCCccccccCCCCcceeecc--ccccCCCcceeEEEec--------------HHHHhhcCcCCccCCCCCCHH-HHHH
Q 012138 271 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD--------------KEVMLCIQPGEHGSTFGGNPL-ASAV 333 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~--------------~~~~~~~~~~~~~~t~~~~~~-~~aa 333 (470)
.-.|.. .+.+.. .|+++.| |+|.|. +-|.|+.+ +++.+.+......+..+++.. ..++
T Consensus 211 Ia~g~~--~~P~~~-ADvvt~sThKtl~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaa 285 (399)
T PF00464_consen 211 IAGGLF--PNPFPY-ADVVTGSTHKTLRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAA 285 (399)
T ss_dssp HHTTSS----GCCT-SSEEEEESSGGG-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHH
T ss_pred eehhee--cCcccc-ceEEEeecccccccc--CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHH
Confidence 444432 122332 5888665 888865 67788888 788887764333333332233 3333
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec
Q 012138 334 AIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 410 (470)
Q Consensus 334 a~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 410 (470)
...++..+.. .++.+++.++++.|.+.|.+.+-+ .+.. .....++++.+... +.+..+..+.|.+.||.+.
T Consensus 286 lAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~---v~~g-gTd~H~vlvd~~~~--~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 286 LAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFK---VVTG-GTDNHQVLVDLRSF--GIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-E---EGGG-S-SSSEEEEEGGGG--TS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEC-CCCCCeEEEEeccc--ccchHHHHHHHHhcCeeec
Confidence 3345555433 467778888888888888885432 1211 12345666665432 2367778888888899985
Q ss_pred ----cCC-----CCEEEEecCC----CCCHHHHHHHHHHH
Q 012138 411 ----PTH-----DTIVRLTPPL----SISSNELQEGSKAL 437 (470)
Q Consensus 411 ----~~~-----~~~iR~~~~~----~~t~e~i~~~~~~l 437 (470)
|.. ...+||..+. ...++|++++.+.|
T Consensus 360 kn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 360 KNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp EE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 332 4679997543 35677777766543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-10 Score=123.14 Aligned_cols=308 Identities=14% Similarity=0.070 Sum_probs=183.2
Q ss_pred CcHHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccccc
Q 012138 117 DKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIR 194 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~ 194 (470)
....+.++..++.+|.++. +.+||.|.+|.+++..+.. +|+ +|++..++ |-+...++.+++. |.|..
T Consensus 205 G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~---------~gd-~Vlv~RN~-HKSv~~al~L~ga~Pvyl~ 273 (755)
T PRK15029 205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT---------DND-VVVVDRNC-HKSIEQGLILTGAKPVYMV 273 (755)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcC---------CCC-EEEeeccc-HHHHHHHHHHcCCeEEEec
Confidence 4456777888888998875 5567777778777776654 455 77777777 9998888888764 33322
Q ss_pred CCCCCCCC-eeeec--CCCHHHHHHHHHhcCC-------CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 195 GFGPLLPG-HLKVD--FGDITALEKIFKESGD-------QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 195 ~~~~~~~~-~~~~~--~~d~~~Le~~l~~~~~-------~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
+-..- .+ ...++ +-+++.+++++++++. +++++++.. .+-.|.+.+ +++|.++|+++|++|++|
T Consensus 274 P~~~~-~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~-PTY~Gv~~d----i~~I~~~~h~~~~~llvD 347 (755)
T PRK15029 274 PSRNR-YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTN-CTYDGVCYN----AKEAQDLLEKTSDRLHFD 347 (755)
T ss_pred ccccc-cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEEC-CCCcceeeC----HHHHHHHHHhcCCeEEEE
Confidence 11100 00 01110 0148999999987642 223566544 355799998 999999999999999999
Q ss_pred ccccCCcccCCcccc-ccC-----C-CCcc-eeecc--ccccCCCcceeEEEecHH--HH--hhcCc-CCccCCCCCCHH
Q 012138 265 EIQSGLARSGRMLAS-DWE-----E-VRPD-MVILG--KALGGGVIPVSAVLADKE--VM--LCIQP-GEHGSTFGGNPL 329 (470)
Q Consensus 265 ev~~g~g~~G~~~~~-~~~-----~-~~pd-i~s~s--K~l~gG~~~ig~v~~~~~--~~--~~~~~-~~~~~t~~~~~~ 329 (470)
|+|.+...-...+.- ... . ..+| +++-| |.+++ +...+++-.+.. .+ +.++. .....|-+++-+
T Consensus 348 EAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~ 426 (755)
T PRK15029 348 EAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYA 426 (755)
T ss_pred CccccccccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHH
Confidence 999852222222211 111 1 3467 65444 77662 201122223211 11 12211 123345567777
Q ss_pred HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC------------CCc-----------------------
Q 012138 330 ASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF------------PNY----------------------- 371 (470)
Q Consensus 330 ~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~------------p~~----------------------- 371 (470)
.+|..-.+.+.++. +.+.++..+....+++.+.++...+ |..
T Consensus 427 LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 506 (755)
T PRK15029 427 ICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTV 506 (755)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhhccc
Confidence 77777777777763 4567777778888888887654210 000
Q ss_pred --eEEEec--c--c------ee-------EEEEecc-CCC------chhHHHHHHHHHHcCceeccCCCCEEEEecCCCC
Q 012138 372 --VKEVRG--R--G------LF-------NAVEFDK-TAL------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI 425 (470)
Q Consensus 372 --~~~~~~--~--g------~~-------~~~~~~~-~~~------~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~ 425 (470)
+....+ . | .+ +.+.+.. ..+ +..+..+.+.|.++||.+--.+...+-+.++...
T Consensus 507 ~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s~g~ 586 (755)
T PRK15029 507 QDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGV 586 (755)
T ss_pred cceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeCCCC
Confidence 010100 0 0 00 0011100 000 2234589999988899998777888888888899
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012138 426 SSNELQEGSKALHDVLE 442 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~ 442 (470)
|++++++++++|.++-+
T Consensus 587 t~~~~~~L~~aL~~~~~ 603 (755)
T PRK15029 587 TRGKWGTLVNTLCSFKR 603 (755)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988755
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=116.03 Aligned_cols=295 Identities=18% Similarity=0.134 Sum_probs=172.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCC-Ce--EEecCChhHHHHHHHHHHHHhchhcc---cCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGY-DM--VLPMNTGAEGVETALKLARKWGYVKK---KFS 163 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~-~~--v~~~~sGteA~~~al~~~~~~~~~~~---~~~ 163 (470)
.++...+.+...+.+.......+ ......++..+++++++. +. -.||+||||||..++.+++..+.... +..
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~ 153 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGK 153 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 45667777777766533222222 223345666777787765 33 58999999999999999987543111 111
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE--EEEccccCCCcccc
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG--FLFEPIQGEAGVII 241 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~--vi~epi~n~~G~~~ 241 (470)
+++...|++....|-+...+..+-+-.... .+..+....+ |+++|++++++ .+.. |+..-...++|.+-
T Consensus 154 ~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~---v~~~~~~~~i---d~~~l~~~i~~---~t~~g~vV~~aGtT~~G~iD 224 (460)
T COG0076 154 PGGKPNIVCSETAHFSFEKAARYLGLGLRR---VPTVPTDYRI---DVDALEEAIDE---NTIGGVVVGTAGTTDTGSID 224 (460)
T ss_pred cCCCCeEEecCcchhHHHHHHHHhCCCcee---EEeccCcccc---CHHHHHHHHHh---hccCceEEEEecCCCCCccC
Confidence 112234445555587766665554422111 1111112333 89999999998 3443 66555578899999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCcc-----cCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH--HH
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLAR-----SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE--VM 312 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~-----~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~--~~ 312 (470)
| +++|.++|++||+++++|.+++||-. .+. |.+...+ .|.++++ |.+-..+ +.|+++.+++ +.
T Consensus 225 d----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~-~~f~l~~--vdSIt~d~HK~g~aP~-~~G~il~rd~e~l~ 296 (460)
T COG0076 225 D----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR-WDFGLEG--VDSITVDGHKYGLAPI-GCGVVLFRDEEALR 296 (460)
T ss_pred C----HHHHHHHHHHcCCcEEEEccccceeecccCccch-hhcCCCC--ceEEEECcccccCCCC-CceEEEEECHHHhh
Confidence 8 99999999999999999999998532 111 1122112 2555544 6655565 8889987654 43
Q ss_pred hhcC--c-CCcc---CCC----CCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceE-EEecc
Q 012138 313 LCIQ--P-GEHG---STF----GGNPLASAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGR 378 (470)
Q Consensus 313 ~~~~--~-~~~~---~t~----~~~~~~~aaa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~~~~~ 378 (470)
+.+. . ...+ .++ +-+....+++++.++.+..++ +.++..++.+++.+.|+++. .+. ...+.
T Consensus 297 ~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~-----~~e~~~~p~ 371 (460)
T COG0076 297 RILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLG-----DFELVNEPE 371 (460)
T ss_pred hhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCC-----CcEeecCCc
Confidence 3332 1 1111 111 222335566667777775544 55555578888888887752 122 22356
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceec
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAK 410 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 410 (470)
...+.+..+... ....+..+++.+.|..+.
T Consensus 372 l~~V~fr~~~~~--~~~~~~~~~~~~~gw~v~ 401 (460)
T COG0076 372 LPIVAFRLKDDE--DTLADLSERLDRRGWQVP 401 (460)
T ss_pred cceEEEEcCCcc--cchhchHHHHHhcCceee
Confidence 666667663221 013445556666676654
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-10 Score=108.16 Aligned_cols=340 Identities=18% Similarity=0.190 Sum_probs=191.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~ 154 (470)
.+||+.+-.+... ..++..++|.. . ...| -.+...+|++..++++|.+.+++|.+|..+...+++...+
T Consensus 42 V~IDLrSDTgT~a---pS~~m~aAM~~----G---DD~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~ 111 (467)
T TIGR02617 42 VFIDLLTDSGTGA---VTQSMQAAMMR----G---DEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_pred eEEECccCCCCCC---CCHHHHHHHHc----C---CcccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcc
Confidence 4689988755421 34566666654 1 1112 2445689999999999999999999999999998886654
Q ss_pred hchhcccCCCCCcEEE-----EEccCcccccc-chhcccCCccccc----CCCCCCC-C-eeeecCCCHHHHHHHHHhcC
Q 012138 155 WGYVKKKFSIDEAIIV-----SCCGCFHGRTL-AAISMSCDNEAIR----GFGPLLP-G-HLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii-----~~~~~yhg~~~-~~~~~~~~~~~~~----~~~~~~~-~-~~~~~~~d~~~Le~~l~~~~ 222 (470)
++|+..++ +....||-.+. +...+++-..... .+.+... . .-.+ |+++|+++|++++
T Consensus 112 --------~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~---dl~~le~~I~~~g 180 (467)
T TIGR02617 112 --------KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNF---DLEGLERGIEEVG 180 (467)
T ss_pred --------cccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCc---CHHHHHHHHhhcC
Confidence 02221111 11223333322 2222332110000 0000000 0 0112 8999999998754
Q ss_pred -CCeEEEEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEecccc----CC------cccCCcc---ccccCCCCcc
Q 012138 223 -DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS----GL------ARSGRML---ASDWEEVRPD 287 (470)
Q Consensus 223 -~~~~~vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~----g~------g~~G~~~---~~~~~~~~pd 287 (470)
+++..+.++-.+| -+|.++ |.+.++++.++|++||+.++.|.+.- -| +..+... +-+.+. ..|
T Consensus 181 ~~~i~~v~~tlt~N~~GGqpv-slenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~-~aD 258 (467)
T TIGR02617 181 PNNVPYIVATITCNSAGGQPV-SLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYK-YAD 258 (467)
T ss_pred CCCceeeeeeEEEecCCCEEe-CHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhc-cCC
Confidence 3455554444444 478888 99999999999999999999997653 01 2222211 001111 236
Q ss_pred ee--eccccccCCCcceeEEE-ecHH----HHhhcCc----CCccCCCCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012138 288 MV--ILGKALGGGVIPVSAVL-ADKE----VMLCIQP----GEHGSTFGG-NPLASAVAIASLDVIRDEKLAERSAHLGE 355 (470)
Q Consensus 288 i~--s~sK~l~gG~~~ig~v~-~~~~----~~~~~~~----~~~~~t~~~-~~~~~aaa~a~l~~~~~~~~~~~~~~~~~ 355 (470)
.+ |+||.++. |+|.++ ++++ +.+..+. .....||++ +.--+.+....|+..-++++.++.-.-.+
T Consensus 259 svt~slsKglgA---pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~ 335 (467)
T TIGR02617 259 MLAMSAKKDAMV---PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQ 335 (467)
T ss_pred EEEEEcCCCCCC---cccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHH
Confidence 55 66676652 655544 4443 3333222 234556653 32333333334555445556666666677
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-------CchhHHHHHHHHHHc-Cceec----------cC-----
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-------LPVSAYDICLKMKER-GILAK----------PT----- 412 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~l~~~-Gv~~~----------~~----- 412 (470)
+|.+.|.+. .+..+. .|....+ ++... ....++.++-+|... ||-.. |.
T Consensus 336 yl~~~L~~~------Gvpi~~-~Gghav~-iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~ 407 (467)
T TIGR02617 336 YLVNGLEEI------GVVCQQ-AGGHAAF-VDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQL 407 (467)
T ss_pred HHHHHHHhC------CCcEEe-cCccEEE-EehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccC
Confidence 888888774 333344 3433332 22111 023567787777655 76521 10
Q ss_pred --CCCEEEEecCC-CCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 413 --HDTIVRLTPPL-SISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 413 --~~~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
.-..+|+++|. +.|.+++|..+++|..+.+ +...+.-
T Consensus 408 ~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~-~~~~i~g 447 (467)
T TIGR02617 408 PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE-NAPNIKG 447 (467)
T ss_pred CCccceeeeccccccccHhHHHHHHHHHHHHHh-hhhhcCC
Confidence 02679998764 5699999999999999988 6555443
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-10 Score=106.31 Aligned_cols=273 Identities=14% Similarity=0.177 Sum_probs=162.4
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 214 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 214 (470)
-+-|.|||-|+..+.+.+.++ -++..|-+.+|++.-+.......+.. .. .|.-+......+ |.+.+
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~--------~~~~~vwis~PtW~NH~~If~~aGl~-v~--~Y~Yyd~~~~~~---df~~m 162 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARF--------FPDATVWISDPTWPNHKAIFEAAGLE-VE--TYPYYDAETKGL---DFDGM 162 (396)
T ss_pred heecCCcchHHHHHHHHHHHh--------CCCceEEeCCCCcHhHHHHHHhcCCc-ee--eeeccccccccc---cHHHH
Confidence 466789999999999877664 24446777888873222111111111 00 001111122223 67777
Q ss_pred HHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC------Ccc
Q 012138 215 EKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV------RPD 287 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~------~pd 287 (470)
-+.|++.+.+. +|++.+ .|||||.-+ +.+.+++|.++.++.|.+-++|=+|.||+... .-+.+++ .+.
T Consensus 163 la~L~~a~~~~-vvLLH~CcHNPTG~D~-t~~qW~~l~~~~~~r~lip~~D~AYQGF~~Gl---eeDa~~lR~~a~~~~~ 237 (396)
T COG1448 163 LADLKTAPEGS-VVLLHGCCHNPTGIDP-TEEQWQELADLIKERGLIPFFDIAYQGFADGL---EEDAYALRLFAEVGPE 237 (396)
T ss_pred HHHHHhCCCCC-EEEEecCCCCCCCCCC-CHHHHHHHHHHHHHcCCeeeeehhhhhhccch---HHHHHHHHHHHHhCCc
Confidence 66776654443 455554 899999998 99999999999999999999999999996431 1121111 222
Q ss_pred e-e--ecccccc-CCCcceeEEE---ecHHHHhhcCc---CCccCCCCCCHH-HHHHHHHHHHH--H----h-h-hhHHH
Q 012138 288 M-V--ILGKALG-GGVIPVSAVL---ADKEVMLCIQP---GEHGSTFGGNPL-ASAVAIASLDV--I----R-D-EKLAE 348 (470)
Q Consensus 288 i-~--s~sK~l~-gG~~~ig~v~---~~~~~~~~~~~---~~~~~t~~~~~~-~~aaa~a~l~~--~----~-~-~~~~~ 348 (470)
+ + ||||.+| =|- |+|+.. -+++..+.+.. ...-++|+.+|- +++.....|+- + + + +.+++
T Consensus 238 ~lva~S~SKnfgLYgE-RVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~ 316 (396)
T COG1448 238 LLVASSFSKNFGLYGE-RVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQ 316 (396)
T ss_pred EEEEehhhhhhhhhhh-ccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3 2 8899998 344 666644 34555444422 123345654443 33333333321 1 1 1 55777
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCCCCEEEEecCCCCCH
Q 012138 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTHDTIVRLTPPLSISS 427 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~iR~~~~~~~t~ 427 (470)
++.+++..|.+.|++..... -+..+..+-.|+.. .. .+...+ .+|+++ ||++...+ |+++. ..++
T Consensus 317 Ri~~mR~~lv~~L~~~~~~~--~f~~i~~Q~GMFsy-~G-----ls~~QV-~rLree~~IY~v~sG----Ri~va-Gl~~ 382 (396)
T COG1448 317 RILEMRQALVDALKALGAPR--NFDFIISQRGMFSY-TG-----LSPEQV-DRLREEFGIYLVASG----RINVA-GLNT 382 (396)
T ss_pred HHHHHHHHHHHHHHhhCCCc--ccchHhhcCceeec-CC-----CCHHHH-HHHHHhccEEEecCC----eeeec-cCCh
Confidence 78888888888887754331 23333344444444 12 244444 455554 99987654 77764 5788
Q ss_pred HHHHHHHHHHHHHH
Q 012138 428 NELQEGSKALHDVL 441 (470)
Q Consensus 428 e~i~~~~~~l~~~l 441 (470)
.+|+.+++.|.+++
T Consensus 383 ~ni~~va~ai~~v~ 396 (396)
T COG1448 383 SNIDYVAKAIAAVL 396 (396)
T ss_pred hhHHHHHHHHHhhC
Confidence 89999999998763
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-12 Score=119.06 Aligned_cols=198 Identities=21% Similarity=0.225 Sum_probs=119.7
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.+|++.+++.+... +.. .....+...++++++++++|.+.++|+.|||.||..+++...+ +++ .||+
T Consensus 7 ~~~~m~~a~~~a~~--gd~-~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~---------~~~-~vi~ 73 (290)
T PF01212_consen 7 PTPAMLEAMAAANV--GDD-AYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLR---------PGE-SVIC 73 (290)
T ss_dssp S-HHEEHHHHHTTS--B-C-CTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHH---------TTE-EEEE
T ss_pred CCHHHHHHHHcccc--CCc-ccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHh---------cCC-ceec
Confidence 68999999844331 111 1123456789999999999999999999999999999998775 454 5555
Q ss_pred EccC-ccccccchh-cccCCcccccCCCCCCCCe-eeecCCCHHHHHHHHHhc---CCCeEEEEEccccCC-CccccCCh
Q 012138 172 CCGC-FHGRTLAAI-SMSCDNEAIRGFGPLLPGH-LKVDFGDITALEKIFKES---GDQIAGFLFEPIQGE-AGVIIPPD 244 (470)
Q Consensus 172 ~~~~-yhg~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~-~G~~~~~~ 244 (470)
...+ .+....++. .+++..... +.... ..+ |+++|++.+... ..++++|.+|..++. +|.++ +.
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~~~~~-----l~~~~~G~l---~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~-s~ 144 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGAKLIP-----LPSDDDGKL---TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVY-SL 144 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTCEEEE-----EBECTGTBB----HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB----H
T ss_pred cccceeeeeccchhhHhcCcEEEE-----CCCcccCCC---CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeC-CH
Confidence 4443 222333332 223321110 00000 122 899999999884 347899998885664 58888 99
Q ss_pred hhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCCcceeeccccccCCCcceeEEE-ecHHHHhh
Q 012138 245 GYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL-ADKEVMLC 314 (470)
Q Consensus 245 ~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~-~~~~~~~~ 314 (470)
+++++|.++|++||+.|+.|-+.-. ....|... -+.. --.|+++||-+-++|. +.|.++ +++++++.
T Consensus 145 ~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~-~e~~-~~~D~v~~~~tK~~g~-~~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 145 EELRAISELAREHGLPLHMDGARLANAAAALGVSL-AEIA-AGADSVSFGGTKNGGA-PGGAVLAGNKEFIAK 214 (290)
T ss_dssp HHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHH-HHHH-TTSSEEEEETTSTT-S-SSEEEEEESHHHHHH
T ss_pred HHHHHHHHHHHhCceEEEEehhhHHHhhhcccccH-HHHh-hhCCEEEEEEEccccc-ccceEEEechHHHHH
Confidence 9999999999999999999977431 00011111 1111 1248876664444454 555554 78885543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.8e-10 Score=108.00 Aligned_cols=320 Identities=16% Similarity=0.149 Sum_probs=188.2
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHcccc-------CCC--CCCCcHHHHHHHHhhhhCC-C--eE-EecCChhH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS-------SRA--FYNDKFPVFAERLTSMFGY-D--MV-LPMNTGAE 143 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-------~~~--~~~~~~~~l~~~l~~~~~~-~--~v-~~~~sGte 143 (470)
.++|+.|...+ |++|.+++.+.+-.+... +.. -..+...+..+.|.++++. + +| ++..|||.
T Consensus 5 ~~nF~aGPa~l-----p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~ 79 (364)
T PRK12462 5 QLNFSGGPGAL-----PDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSL 79 (364)
T ss_pred cceecCCCcCC-----CHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHH
Confidence 34677775553 589999988877553221 000 0134456677778888864 2 35 55566999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEE-EEEccCccccccch-hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAII-VSCCGCFHGRTLAA-ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~i-i~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~ 221 (470)
+.++++..+.. ++++.+ .+..+.| |....- ...-++ ..........+...+| ++++++ +.
T Consensus 80 ~~ea~~~Nll~---------~g~~~~~~~~tG~f-g~r~~~ea~~~g~--v~~~~~~~~~~~~~~p--~~~~~~--~~-- 141 (364)
T PRK12462 80 QFSMIPMNFSR---------PGAAAPEYVTTGYW-SRKAIGEASRVAA--MRVVWDGAASGYRTLP--SLAELD--WD-- 141 (364)
T ss_pred HHHHHHHHcCC---------CCCcEEEEEeCCHH-HHHHHHHHHhcCC--ceEecCcCCCCCCcCC--CHHHhc--cC--
Confidence 99999887754 455344 3455544 322211 111111 0000000000001111 445441 11
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCC
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGV 299 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~ 299 (470)
.+.+.|.+.+....+|+..| ++.+.+++++|+|-+-+ + .+..+.++.+ |++..| |.++ .-
T Consensus 142 -~d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-~--~s~pid~~~~----dvi~agsQKnlg-P~ 203 (364)
T PRK12462 142 -ARAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-F--MSRPFDVEAY----GMVYAHAQKNLG-PA 203 (364)
T ss_pred -CCCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-h--hCCCCChHHc----cEEEeeccccCC-CC
Confidence 24566666664556898884 34444799999998765 2 2333444444 666444 9998 33
Q ss_pred cceeEEEecHHHHhhcCcC-----------CccCCC-CCCHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHH
Q 012138 300 IPVSAVLADKEVMLCIQPG-----------EHGSTF-GGNPLASAVAIASLDVIRDE-----KLAERSAHLGEELRQHLF 362 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~-----------~~~~t~-~~~~~~~aaa~a~l~~~~~~-----~~~~~~~~~~~~l~~~L~ 362 (470)
.++.++.+++.++..... ...+++ +++.....++..+|+++.++ .+.++.+++++.+++.+.
T Consensus 204 -Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id 282 (364)
T PRK12462 204 -GVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLD 282 (364)
T ss_pred -ceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 667888999888765431 123444 56677888888999998765 455666667777777777
Q ss_pred HHHhhCCCceEEEeccceeEEE-EeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 363 KIQQQFPNYVKEVRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+...-+. .......+..+... .+..+ ....+|.+.+.++|+.-..|+ -+.+|.+.--.++.|.++.+++-+++
T Consensus 283 ~~~~~~~-~~~~~~~RS~mnv~f~~~~~---~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~ 358 (364)
T PRK12462 283 ALNEVID-CHAHRAARSTMNVAFRFRQP---RLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKD 358 (364)
T ss_pred hCCCccc-CCCChhhcCcceEEEEcCCH---HHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 6532221 11122223333332 22322 357789999999999876654 35699998888999999999999988
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+-+
T Consensus 359 f~~ 361 (364)
T PRK12462 359 FAI 361 (364)
T ss_pred HHH
Confidence 765
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=113.21 Aligned_cols=311 Identities=17% Similarity=0.200 Sum_probs=201.6
Q ss_pred CCcHHHHHHHHhhhhCCCeEEec-CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
..+..+|+++|+++.|.|.+.|- |||.++-.+-++.+|.|... +| .+...|....-+.||.......+.+-...-.
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~-kg--e~hRnvClIPvSAHGTNPASA~MagmkvvpV 657 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLES-KG--EGHRNVCLIPVSAHGTNPASAAMAGMKVVPV 657 (1001)
T ss_pred HHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHh-cc--CCcceeEEEeecccCCChhhHHhcCCEEEEe
Confidence 34467899999999999987655 78998888888888876332 33 4555676666677998766655554321100
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecc----ccCC
Q 012138 195 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI----QSGL 270 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev----~~g~ 270 (470)
..+. ...+ |+.+|+++.+++.++.+++++.. .+..|..-+ -++++.++.++||--+..|.+ |.|+
T Consensus 658 ---~~~~-~G~i---d~~dLk~kaekh~~~Laa~MvTY-PST~GvfE~---~i~d~cd~iHehGGQVYlDGANMNAqVGl 726 (1001)
T KOG2040|consen 658 ---GCDA-NGNI---DMVDLKAKAEKHKDNLAALMVTY-PSTHGVFEE---GIDDICDIIHEHGGQVYLDGANMNAQVGL 726 (1001)
T ss_pred ---eccC-CCCc---cHHHHHHHHHHhhhhhheeEEec-ccccccccc---cHHHHHHHHHhcCCEEEecCCCccceecc
Confidence 0000 0111 78999999998888999999887 555676543 388999999999999999964 5577
Q ss_pred cccCCcc-ccccCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCC--------cc---CCC----CCCHHHHHH
Q 012138 271 ARSGRML-ASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGE--------HG---STF----GGNPLASAV 333 (470)
Q Consensus 271 g~~G~~~-~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~--------~~---~t~----~~~~~~~aa 333 (470)
.+.|... ...|.++. -+|+-.-| ||. .+|-|.+.+.++..+.... .. ++. -++......
T Consensus 727 c~pGd~GaDV~HLNLH---KTFcIPHGGGGP-g~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpI 802 (1001)
T KOG2040|consen 727 CRPGDIGADVCHLNLH---KTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPI 802 (1001)
T ss_pred cCCccccccceeeccc---ceeeecCCCCCC-CCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehh
Confidence 7777553 23334332 13333333 444 5566666776666553210 00 011 144455566
Q ss_pred HHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccC--CC----chhHHHHHHHHHH
Q 012138 334 AIASLDVIRDEKLAE---RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT--AL----PVSAYDICLKMKE 404 (470)
Q Consensus 334 a~a~l~~~~~~~~~~---~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~--~~----~~~~~~~~~~l~~ 404 (470)
.++.+++|....+.+ -+..+++++.++|+.. |+ .+ .++.-..++-+|..+ +. +..+.+++++|.+
T Consensus 803 SwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h---Yk-il--~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~D 876 (1001)
T KOG2040|consen 803 SWAYIKMMGSGGLKDASKIAILNANYMAKRLESH---YK-IL--FRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMD 876 (1001)
T ss_pred HHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc---cc-ee--EecCCcceeeeeeeechhhccccCCcHHHHHHHHHh
Confidence 778888887644433 3445778888888763 22 11 123323455444221 11 4678899999999
Q ss_pred cCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCCC
Q 012138 405 RGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP 451 (470)
Q Consensus 405 ~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~ 451 (470)
.|+....- -.+.+.+-|.-.-+.+|+|++++++-.+-+ |++++.+.
T Consensus 877 YgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIre-EI~~ie~G 925 (1001)
T KOG2040|consen 877 YGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIRE-EIAQIEEG 925 (1001)
T ss_pred ccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHH-HHHHHHcc
Confidence 99986432 267899999988999999999999988877 77665554
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-10 Score=111.48 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=174.7
Q ss_pred CHH-HHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--C--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 93 HPK-IMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--D--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 93 ~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
+|. ..+++.+.+-...|.+.. ..+...++.+.|.++++. + -++++.|||.++|+++..+..- +++
T Consensus 15 ~~~~~~~~~~~~~~~~~HRs~~-F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~--------~g~- 84 (374)
T TIGR01365 15 RPGWSIEELKNAPLGRSHRSKL-GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGC--------RGV- 84 (374)
T ss_pred CchhhHHHHhhhhcccCcCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCC--------CCC-
Confidence 455 455555433222222111 234456677778887764 2 3677999999999999977520 344
Q ss_pred EEEEEccCccccc-c-chhcccCCcccccCCCCCCCCeeeecCC---CHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 168 IIVSCCGCFHGRT-L-AAISMSCDNEAIRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 168 ~ii~~~~~yhg~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
.+++. +.| |.. . .....-+.+.. .....+++ ++++++. ++ . |.+...-..||+..|
T Consensus 85 ~vLv~-g~F-G~r~~~eia~~~g~~~v---------~~l~~~~g~~~~~~~ve~--~~---~---v~~vhnETSTGv~np 145 (374)
T TIGR01365 85 DVLAW-ESF-GKGWVTDVTKQLKLPDV---------RVLEAEYGKLPDLKKVDF--KN---D---VVFTWNGTTSGVRVP 145 (374)
T ss_pred eEEEE-CHH-HHHHHHHHHHhcCCCCc---------EEEcCCCCCCCCHHHcCC--CC---C---EEEecCCCchheecc
Confidence 44443 344 333 2 22111111100 01122222 6777762 11 2 333332456899997
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC--
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG-- 318 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~-- 318 (470)
++++...+ +++++|+|.+-+ +| +..+..+ + .|++..| |++++.- .++.++.+++.++.....
T Consensus 146 ----v~~i~~~~--~~~lliVDavSs-~g--~~~l~~d--~--iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~ 211 (374)
T TIGR01365 146 ----NGDFIPAD--REGLTICDATSA-AF--AQDLDYH--K--LDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTP 211 (374)
T ss_pred ----cccccccc--CCCcEEEEccch-hc--CCCCChh--H--CcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCC
Confidence 65444222 589999998876 32 3333333 2 4766444 9999543 567888888877654310
Q ss_pred ---------------------CccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH-hhCCCce
Q 012138 319 ---------------------EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQ-QQFPNYV 372 (470)
Q Consensus 319 ---------------------~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~-~~~p~~~ 372 (470)
...+.++++.....++..+|+++++ ++..++.+++++.+++.+++++ ..+ ..
T Consensus 212 y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~--~~ 289 (374)
T TIGR01365 212 AWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHF--LA 289 (374)
T ss_pred CCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCccc--CC
Confidence 0112233455566666667776554 3566777788888888888875 221 11
Q ss_pred E--EEeccceeEEEEeccCCC---chh-----HHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 373 K--EVRGRGLFNAVEFDKTAL---PVS-----AYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 373 ~--~~~~~g~~~~~~~~~~~~---~~~-----~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
. ..++ .....+.+..+.. ..+ ..++.+.|+++||.+.++. ++.+||...-.++.++++.+++.|+
T Consensus 290 ~~~~~rS-~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 290 ETPEIRS-NTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred CChhhcC-CCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 1 1222 2233343422210 002 5789999999999888653 5889998888899999999999998
Q ss_pred HHHh
Q 012138 439 DVLE 442 (470)
Q Consensus 439 ~~l~ 442 (470)
=+.+
T Consensus 369 ~~~~ 372 (374)
T TIGR01365 369 WAFA 372 (374)
T ss_pred HHHh
Confidence 6654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-10 Score=117.11 Aligned_cols=308 Identities=12% Similarity=0.059 Sum_probs=176.8
Q ss_pred CCcHHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch-hcccCC-ccc
Q 012138 116 NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCD-NEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~-~~~ 192 (470)
.....+.++..++.+|.++. +++||.|.+|.+++.++.. +|+ .|++..++ |-+...+ +.+++. |.|
T Consensus 173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~---------~Gd-~VLvdRN~-HKSv~hgaLiLsGa~PVY 241 (720)
T PRK13578 173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLT---------PGD-LVLFDRNN-HKSNHHGALIQAGATPVY 241 (720)
T ss_pred ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcC---------CCC-EEEeeccc-HHHHHHHHHHHcCCeEEE
Confidence 44567788888899999875 5557777778777776654 455 77777666 8887764 665553 444
Q ss_pred ccCCCCCCCC-eeeecCC--CHHHHHHHHHhcC-C------CeEEEEEccccCCCccccCChhhHHHHHHH-HHhcCcEE
Q 012138 193 IRGFGPLLPG-HLKVDFG--DITALEKIFKESG-D------QIAGFLFEPIQGEAGVIIPPDGYLKAVRDL-CSKYNILM 261 (470)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~--d~~~Le~~l~~~~-~------~~~~vi~epi~n~~G~~~~~~~~l~~l~~l-~~~~gill 261 (470)
..+-..- -+ ...++.. +.+.++++|++++ + ..+++++.. .+-.|.+++ +++|.++ |++++ .|
T Consensus 242 l~P~~n~-~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~-pTYdG~~yd----i~~I~~~~~h~~~-~l 314 (720)
T PRK13578 242 LETARNP-FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQL-GTYDGTIYN----ARQVVDKIGHLCD-YI 314 (720)
T ss_pred eeccccc-cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEEC-CCCcceeec----HHHHHHHhhccCC-cE
Confidence 2211100 00 0112111 3677999998762 2 156666554 455799998 9999998 78888 99
Q ss_pred EEeccccCCcccCCc---cccccCCCCcc----eeecc--ccccCCCcceeEEEecHHHH---------hhcCc-CCccC
Q 012138 262 IADEIQSGLARSGRM---LASDWEEVRPD----MVILG--KALGGGVIPVSAVLADKEVM---------LCIQP-GEHGS 322 (470)
Q Consensus 262 I~Dev~~g~g~~G~~---~~~~~~~~~pd----i~s~s--K~l~gG~~~ig~v~~~~~~~---------~~~~~-~~~~~ 322 (470)
++||+|.+.-.-... +.-......+| +++-| |.+++ +...+++-.+...+ +.+.. .....
T Consensus 315 lvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~q 393 (720)
T PRK13578 315 LFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHA 393 (720)
T ss_pred EEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHHHHc
Confidence 999999863211121 11111223445 55444 76652 21222333322211 11211 12233
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCce-EEE-----------------------
Q 012138 323 TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYV-KEV----------------------- 375 (470)
Q Consensus 323 t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~-~~~----------------------- 375 (470)
|-+++-+.+|..-.+-..++. ..+.+...+.+..+++.|.+....+-.+. ..+
T Consensus 394 STSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~ 473 (720)
T PRK13578 394 STSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFE 473 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccccc
Confidence 445566666665555555543 45677777777778877732211110000 000
Q ss_pred ecc---c-------ee------EEEEec-cC-C------CchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHH
Q 012138 376 RGR---G-------LF------NAVEFD-KT-A------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 376 ~~~---g-------~~------~~~~~~-~~-~------~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~ 431 (470)
++. | .+ +.+... .+ . .+..+..+.+.|+++||.+--.+.+.+-|.++...|+++++
T Consensus 474 p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~ 553 (720)
T PRK13578 474 PGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQ 553 (720)
T ss_pred cCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHH
Confidence 000 0 00 001010 00 0 02236889999989999998888888888888899999999
Q ss_pred HHHHHHHHHHh
Q 012138 432 EGSKALHDVLE 442 (470)
Q Consensus 432 ~~~~~l~~~l~ 442 (470)
.++++|.++-+
T Consensus 554 ~Lv~aL~~f~~ 564 (720)
T PRK13578 554 QLVAMLARFEK 564 (720)
T ss_pred HHHHHHHHHHH
Confidence 99999998755
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-09 Score=112.05 Aligned_cols=305 Identities=11% Similarity=0.049 Sum_probs=180.7
Q ss_pred CCcHHHHHHHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-cccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 193 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~ 193 (470)
.-...+.++..++.+|.++.+| +||.|.+|.+++.++.. +|+ .|++..++ |-+...++.+++. |.|.
T Consensus 194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~---------~Gd-~VLvdRN~-HKSv~~aLilsga~PVYl 262 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAP---------AGS-TLLIDRNC-HKSLAHLLMMSDVVPIWL 262 (713)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcC---------CCC-EEEeeccc-HHHHHHHHHHcCCeeEEe
Confidence 3446677888888999988655 56667778777776654 455 77766666 9888888777764 3332
Q ss_pred cCCCCCCCC-eeeecCC--CHHHHHHHHHhcCCC--eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEE-EEeccc
Q 012138 194 RGFGPLLPG-HLKVDFG--DITALEKIFKESGDQ--IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM-IADEIQ 267 (470)
Q Consensus 194 ~~~~~~~~~-~~~~~~~--d~~~Le~~l~~~~~~--~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gill-I~Dev~ 267 (470)
.+-..- -+ ...++.. +.+.++++++++++. ++++++.. .+-.|.+++ +++|.++| |+.+ ++||+|
T Consensus 263 ~P~~n~-~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~-pTYdGi~yd----~~~I~~~~---g~~~ilvDEAh 333 (713)
T PRK15399 263 KPTRNA-LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITN-STYDGLLYN----TDWIKQTL---DVPSIHFDSAW 333 (713)
T ss_pred cccccc-cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEEC-CCCCceeeC----HHHHHHHh---CCCEEEEeccc
Confidence 211100 00 0111100 459999999887532 23444433 255799998 89999988 6666 699999
Q ss_pred cCCcccCCc----cccccCCCCccee-----eccccccCCCcceeEEEecHHHH-hhcCc-CCccCCCCCCHHHHHHHHH
Q 012138 268 SGLARSGRM----LASDWEEVRPDMV-----ILGKALGGGVIPVSAVLADKEVM-LCIQP-GEHGSTFGGNPLASAVAIA 336 (470)
Q Consensus 268 ~g~g~~G~~----~~~~~~~~~pdi~-----s~sK~l~gG~~~ig~v~~~~~~~-~~~~~-~~~~~t~~~~~~~~aaa~a 336 (470)
.++-.-.+. .+.. .+-.+|.+ |.-|.+++ +...+++-.+..+- +.+.. .....|-+++-+.+|..-.
T Consensus 334 gah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~ 411 (713)
T PRK15399 334 VPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVET 411 (713)
T ss_pred hhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 963221121 1121 11134655 44477663 21333343322211 11111 1233444566777777777
Q ss_pred HHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEEecc-----------------c-------------eeE
Q 012138 337 SLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRGR-----------------G-------------LFN 382 (470)
Q Consensus 337 ~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~~~~-----------------g-------------~~~ 382 (470)
+..+++. ..+.+...+.+..+++.|.++.....++ +....+. | .=+
T Consensus 412 a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~Kl 491 (713)
T PRK15399 412 AAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKV 491 (713)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceE
Confidence 7676763 4577788888888888887754311111 1111100 0 000
Q ss_pred EEEecc---C----CCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDK---T----ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~---~----~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.... . ..+..+..+.+.|.++||.+--.+.+.+-|.++...|+++++.+++.|.++-+
T Consensus 492 tI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~ 558 (713)
T PRK15399 492 TILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR 558 (713)
T ss_pred EEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 111110 0 11456788999999999999888888888888899999999999999987744
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=112.42 Aligned_cols=302 Identities=11% Similarity=0.048 Sum_probs=180.0
Q ss_pred CCcHHHHHHHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-cccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 193 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~ 193 (470)
.....+.++..++.+|.++.+| +||.|.+|.+++.++.. +|+ .|++..++ |-+...++.+++. |.|.
T Consensus 194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~---------~Gd-~VLvdRN~-HKSv~haLilsga~PVYl 262 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAP---------AGS-TVLIDRNC-HKSLTHLMMMSDVTPIYF 262 (714)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcC---------CCC-EEEeeccc-HHHHHHHHHHcCCeEEEe
Confidence 3446778888889999988655 46667777777776654 455 77766666 9988888777764 4332
Q ss_pred cCCCCCCCC-eeeecCC--CHHHHHHHHHhcCCCe---EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 194 RGFGPLLPG-HLKVDFG--DITALEKIFKESGDQI---AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 194 ~~~~~~~~~-~~~~~~~--d~~~Le~~l~~~~~~~---~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
.+-..- -+ ...++.. +.+.++++++++++.. .+|+.+| +-.|.+++ ++.|.++|+.++ |++||+|
T Consensus 263 ~P~rn~-~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p--TYdG~~yd----~~~I~~~~~~~~--ilvDEAw 333 (714)
T PRK15400 263 RPTRNA-YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDSAW 333 (714)
T ss_pred cccccc-cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC--CCccEecC----HHHHHHHhCCCC--EEEEccc
Confidence 211100 00 0111100 4899999998865321 3455555 55799998 999999999888 6899999
Q ss_pred cCCcccCCcc----ccccCCCCc-c--ee--eccccccCCCcceeEEEe----c-HHHHhhcCcCCccCCCCCCHHHHHH
Q 012138 268 SGLARSGRML----ASDWEEVRP-D--MV--ILGKALGGGVIPVSAVLA----D-KEVMLCIQPGEHGSTFGGNPLASAV 333 (470)
Q Consensus 268 ~g~g~~G~~~----~~~~~~~~p-d--i~--s~sK~l~gG~~~ig~v~~----~-~~~~~~~~~~~~~~t~~~~~~~~aa 333 (470)
.++-.-...+ +.. .+-.+ | ++ |.-|.+++ +...+++-. + +.+.+.+ ....|-+++-+.+|.
T Consensus 334 gah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~---~m~~STSPsY~l~AS 408 (714)
T PRK15400 334 VPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAY---MMHTTTSPHYGIVAS 408 (714)
T ss_pred hhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHH---HHHcCCCcHHHHHHH
Confidence 8632211221 111 12111 3 44 34476652 101111111 1 2222222 233444566777777
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEEecc-----------------c--e----------
Q 012138 334 AIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRGR-----------------G--L---------- 380 (470)
Q Consensus 334 a~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~~~~-----------------g--~---------- 380 (470)
.-.+..+++. +.+.+...+.+..+++.|.++.....++ +....+. | .
T Consensus 409 LD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP 488 (714)
T PRK15400 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (714)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCC
Confidence 7777777763 4577778888888888887753210001 1111100 0 0
Q ss_pred -eEEEEecc---C----CCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 381 -FNAVEFDK---T----ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 381 -~~~~~~~~---~----~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
=+.+.... . ..+..+..+.+.|.++||.+--.+.+.+-|.++...|+++++.+++.|.++-+
T Consensus 489 ~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~ 558 (714)
T PRK15400 489 IKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (714)
T ss_pred ceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00111100 0 01345778999999999999888888899988899999999999999987744
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-09 Score=115.13 Aligned_cols=272 Identities=14% Similarity=0.082 Sum_probs=161.7
Q ss_pred HHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCC-CcEEEEEccCccccccchhccc-CCcccccC
Q 012138 120 PVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSID-EAIIVSCCGCFHGRTLAAISMS-CDNEAIRG 195 (470)
Q Consensus 120 ~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g-~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~ 195 (470)
.++...+++++|.+ ++.++.++|.+.++++... ++ . ++ +++|++.+..| ..+...+... ...++
T Consensus 124 ~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~-~~--~-----~~~~~~vlv~~~~h-P~~~~v~~t~a~~~G~--- 191 (954)
T PRK05367 124 LNFQTMVADLTGLEIANASLLDEATAAAEAMALAK-RV--S-----KSKSNRFFVDDDVH-PQTLDVLRTRAEPLGI--- 191 (954)
T ss_pred HHHHHHHHHHHCCChhhccccccHHHHHHHHHHhh-hh--c-----cCCCCEEEEcCccC-HHHHHHHHHHHHhCCC---
Confidence 35667788888876 5788999999998766544 32 1 12 24777777674 4433322111 10111
Q ss_pred CCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC
Q 012138 196 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 275 (470)
Q Consensus 196 ~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~ 275 (470)
.+..++.++ +++ .+++.++++.. .|.+|.+.| +++|.++|+++|+++++|..+..++..-
T Consensus 192 ------ev~~~~~~~--d~~------~~~~~~vlvq~-p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l~- 251 (954)
T PRK05367 192 ------EVVVGDAAK--ALD------HDDVFGVLLQY-PGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLLT- 251 (954)
T ss_pred ------EEEEecCcc--CCC------cccEEEEEEec-CCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCCC-
Confidence 123333322 111 12666665544 678999998 9999999999999999998663221110
Q ss_pred ccccccCCCCcceeecc--cc---cc-CCCcceeEEEecHHHHhhcCcCCcc-------C---C-----------C---C
Q 012138 276 MLASDWEEVRPDMVILG--KA---LG-GGVIPVSAVLADKEVMLCIQPGEHG-------S---T-----------F---G 325 (470)
Q Consensus 276 ~~~~~~~~~~pdi~s~s--K~---l~-gG~~~ig~v~~~~~~~~~~~~~~~~-------~---t-----------~---~ 325 (470)
....+| .|+++.+ |. ++ ||- ..|++.+++++.+.+.+...+ . . + +
T Consensus 252 --~pge~G--aDi~vgs~qkfg~P~g~GGP-~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaT 326 (954)
T PRK05367 252 --PPGEMG--ADIAVGSAQRFGVPMGFGGP-HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKAT 326 (954)
T ss_pred --ChhhcC--CCEEEeeCcccCCCCCCCCC-CEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccc
Confidence 122233 3665432 43 22 565 688899999888776432111 0 0 0 1
Q ss_pred CCHHHH---HHHHH--HHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHH
Q 012138 326 GNPLAS---AVAIA--SLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397 (470)
Q Consensus 326 ~~~~~~---aaa~a--~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 397 (470)
.|.... .++.+ .+.++.. +.+.+++..+..++.++|++.+... ... .....+.+.+ +. ++.+
T Consensus 327 sNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~---~~~--~~f~~~~~~~--~~---~~~~ 396 (954)
T PRK05367 327 SNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEV---VHD--SFFDTLTVEV--GG---DAAA 396 (954)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCccc---CCC--CCCCeEEEeC--CC---CHHH
Confidence 111111 11111 1233333 4567778888888888886633221 111 1111222322 22 6789
Q ss_pred HHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 398 ~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+.++|.++||.+.....+.+|+++....|++||+.+++.|.
T Consensus 397 i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 397 VLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred HHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 99999999999866556789999999999999999999997
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=110.53 Aligned_cols=300 Identities=13% Similarity=0.102 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCC-------cHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYND-------KFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKF 162 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~ 162 (470)
.++.|.+++.+..+.++.+ ..|..+ ...++...+++++|.+ ++-++.++|.+.++++.... + ++
T Consensus 117 ~P~~v~~~i~~~~~~~Tay-tPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~-~--~~--- 189 (993)
T PLN02414 117 VPPVILRNILENPGWYTQY-TPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNN-I--LK--- 189 (993)
T ss_pred CCHHHHHHHHhChHHHhhc-CCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHh-c--cc---
Confidence 4555658887766544322 123222 1345667788888865 69999999999987765442 2 11
Q ss_pred CCCCcEEEEEccCccccccchhccc-CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 163 SIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 163 ~~g~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
.++++|++.+..| ..+...+..- ...+ -.+..++. +... ... +.+.++++.. .|.+|.+.
T Consensus 190 -g~~~~VlVs~~~h-P~~~~v~~t~a~~~G---------ieV~~v~~---~~~~-~~~---~~v~~vlvq~-P~~~G~v~ 250 (993)
T PLN02414 190 -GKKKKFLIASNCH-PQTIDVCQTRADGLG---------LEVVVADE---KDFD-YSS---GDVCGVLVQY-PATDGEVL 250 (993)
T ss_pred -CCCCEEEEcCccC-HhHHHHHHHhhhhcC---------CEEEEecc---hhhc-ccc---CceEEEEEec-CCCCeEEc
Confidence 1234677766664 4433322111 1011 11234432 2211 111 2565665433 55699999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccc---c-CCCcceeEEEecHHHHhh
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KAL---G-GGVIPVSAVLADKEVMLC 314 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l---~-gG~~~ig~v~~~~~~~~~ 314 (470)
| +++|.++|+++|+++++ .++. +++..- ....+| .|+++.+ |.. + ||. ..|++.+++++.+.
T Consensus 251 d----v~~I~~~ah~~GaL~iV-aad~lal~~l~---~pge~G--ADi~vgsgqKwg~P~G~GGP-~aGflavr~~~~r~ 319 (993)
T PLN02414 251 D----YAEFVKNAHANGVKVVM-ATDLLALTMLK---PPGEWG--ADIVVGSAQRFGVPMGYGGP-HAAFLATSQEYKRL 319 (993)
T ss_pred C----HHHHHHHHHHcCCEEEE-EECHHHhcCCC---CHhhcc--CcEEEECCCccccCCCCCCC-CeeEEEECHHHHhh
Confidence 8 99999999999999999 4444 221110 122233 3666443 332 2 666 68999999988665
Q ss_pred cCcCCc-------c-C----------------CCCCCHHHHHHHHHHHH-----HHhh---hhHHHHHHHHHHHHHHHHH
Q 012138 315 IQPGEH-------G-S----------------TFGGNPLASAVAIASLD-----VIRD---EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 315 ~~~~~~-------~-~----------------t~~~~~~~~aaa~a~l~-----~~~~---~~~~~~~~~~~~~l~~~L~ 362 (470)
+..... + . ..+.|..+..+..+++. .+.. +++.+++..+..++.++|.
T Consensus 320 ~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~ 399 (993)
T PLN02414 320 MPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLK 399 (993)
T ss_pred CCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 431100 0 0 11234433333333332 2222 4567788888899999887
Q ss_pred HHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+++.+ .... ..-..+.+.+ + +..++.++|.++||.+.....+.+|+|+...+|++||+.++++|..
T Consensus 400 ~~G~~---~~~~--~~f~~vt~~~--~----~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 400 KLGFQ---VQSL--PFFDTVKVKC--S----DADAIADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred hcCCc---cCCC--CCcCeEEEec--C----CHHHHHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 64322 1111 1111223332 2 3478999999999988766577899999999999999999999963
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=105.16 Aligned_cols=221 Identities=16% Similarity=0.146 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHHcccc---C-CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 93 HPKIMKALQEQAEKLTLS---S-RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
+|++.+++.+.++....- - .+...+-...+++.++...+.+.+.++|+-+.|+..++.... +++++
T Consensus 40 ~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~----------~~~Ev 109 (395)
T COG1921 40 SPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA----------EGKEV 109 (395)
T ss_pred CHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc----------cCCeE
Confidence 588899888877653211 0 011112233566667777788899999999999888776553 24556
Q ss_pred EEEEcc---CccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-Ecc-ccCCCccccCC
Q 012138 169 IVSCCG---CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FEP-IQGEAGVIIPP 243 (470)
Q Consensus 169 ii~~~~---~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi-~ep-i~n~~G~~~~~ 243 (470)
|+..-+ ++|-+....+.+.+..-.. +.........+++.+|.+ ++++++ +-. -.+.+|.+.
T Consensus 110 Vis~g~lV~gg~~~v~d~~~~aG~~l~E---------vG~tn~t~~~d~~~AIne---~ta~llkV~s~~~~f~~~l~-- 175 (395)
T COG1921 110 VVSRGELVEGGAFRVPDIIRLAGAKLVE---------VGTTNRTHLKDYELAINE---NTALLLKVHSSNYGFTGMLS-- 175 (395)
T ss_pred EEEccccccCCCCChhHHHHHcCCEEEE---------ecccCcCCHHHHHHHhcc---CCeeEEEEeecccccccccc--
Confidence 665211 4565666666555532111 111111268899999988 677766 433 224566665
Q ss_pred hhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCc
Q 012138 244 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH 320 (470)
Q Consensus 244 ~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~ 320 (470)
+++++++|++||+++|+|..-....+ +.... ......+|+++|| |.|+|. +.|.+++++++++.++....
T Consensus 176 ---~~~l~~ia~~~~lpvivD~aSg~~v~--~e~~l~~~la~GaDLV~~SgdKllgGP--qaGii~GkKelI~~lq~~~l 248 (395)
T COG1921 176 ---EEELVEIAHEKGLPVIVDLASGALVD--KEPDLREALALGADLVSFSGDKLLGGP--QAGIIVGKKELIEKLQSHPL 248 (395)
T ss_pred ---HHHHHHHHHHcCCCEEEecCCccccc--cccchhHHHhcCCCEEEEecchhcCCC--ccceEechHHHHHHHHhhhh
Confidence 88999999999999999987543322 11111 2233457999998 666653 78889999999999886655
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 321 GSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
...+-......++..++|+.+...
T Consensus 249 ~Ralrv~K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 249 KRALRVDKETLAALEAALELYLQP 272 (395)
T ss_pred hhhhhcCcHhHHHHHHHHHHHcCc
Confidence 666667888999999999987764
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-11 Score=113.45 Aligned_cols=227 Identities=21% Similarity=0.250 Sum_probs=57.4
Q ss_pred ccccCCCC--CHHHHHHHHHHHHHccccC---C-CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchh
Q 012138 85 SAVNQGHC--HPKIMKALQEQAEKLTLSS---R-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 85 ~~~~lG~~--~p~v~~a~~~~~~~~~~~~---~-~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
...+||.+ ++++.+++.+.+..+..-- . +--..-+..+++.++++.|.+..+++|+...|+..++..+..
T Consensus 9 lHTnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~---- 84 (367)
T PF03841_consen 9 LHTNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAK---- 84 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 34556653 4777888777765432110 0 000111345677788888999999999999999988886643
Q ss_pred cccCCCCCcEEEE------EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-Ec
Q 012138 159 KKKFSIDEAIIVS------CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FE 231 (470)
Q Consensus 159 ~~~~~~g~~~ii~------~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi-~e 231 (470)
++++|++ .-++| +....+..++..-.. +-.-..-.+++.|++|.+ +|++++ +.
T Consensus 85 ------~~EvIvsRGelVeiGgsF--Rip~vm~~sGa~lvE---------VGttN~t~~~Dye~AI~e---~Ta~ll~Vh 144 (367)
T PF03841_consen 85 ------GKEVIVSRGELVEIGGSF--RIPDVMRQSGARLVE---------VGTTNRTHLSDYEKAITE---NTAALLKVH 144 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccccccccccccccccc--ccccccccccccccc---------cccccccccccccccccc---ccccccccc
Confidence 5555554 12222 122233333321110 000000147888999987 888887 76
Q ss_pred c----ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC------CcccCCccccccCCCCcceeecc--ccccCCC
Q 012138 232 P----IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG------LARSGRMLASDWEEVRPDMVILG--KALGGGV 299 (470)
Q Consensus 232 p----i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g------~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~ 299 (470)
+ +.+-++.+. ++++.+++++|++++|+|-.-+. +|..+..-..+......|+++|| |.++|.
T Consensus 145 ~Sn~~i~GFt~~~~-----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP- 218 (367)
T PF03841_consen 145 TSNFRIQGFTGEVS-----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP- 218 (367)
T ss_dssp ---------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--
T ss_pred cccccccccccccc-----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC-
Confidence 4 223355553 89999999999999999976521 12222221123333446999999 666654
Q ss_pred cceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh
Q 012138 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 342 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~ 342 (470)
..|.+++++++++.++.......+-..-+..++..++|+...
T Consensus 219 -QaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 219 -QAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp -S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--
T ss_pred -CeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHH
Confidence 678999999999999866666667788899999999998754
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-08 Score=90.79 Aligned_cols=334 Identities=16% Similarity=0.136 Sum_probs=198.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHccc------cCCCC-CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhch
Q 012138 87 VNQGHCHPKIMKALQEQAEKLTL------SSRAF-YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 87 ~~lG~~~p~v~~a~~~~~~~~~~------~~~~~-~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~ 157 (470)
+++|..+....+.+.+.+++..- ..+.. .-...+-+-..++.+.|. +.|-++|+=|.-+...+-.+.+.+
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPT- 152 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPT- 152 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCc-
Confidence 66887888888888888876421 11100 001112233445555554 457777876665555554443321
Q ss_pred hcccCCCCCcEEEEEccCccccccch---hcccCCcccccCC---CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGF---GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
+.+.+|+....+|....... +.+-+.. ....+ .|- .+-..+ -.+++-+.|+..++.++.|++.
T Consensus 153 ------ekR~KILlE~kaFPSDhYAiesQ~~lhG~~-~e~sm~~iePR-EGEetl---RteDILd~IEkngDeiA~v~fS 221 (465)
T KOG3846|consen 153 ------EKRFKILLEKKAFPSDHYAIESQCKLHGIS-PENSMIQIEPR-EGEETL---RTEDILDTIEKNGDEIALVCFS 221 (465)
T ss_pred ------chhhhhhhccCCCCchHHHHHhhhhhcCCC-hHHheEEeccc-ccccch---hHHHHHHHHHhcCCeEEEEEee
Confidence 34567888777773322221 1111100 00000 000 001111 3567777788888899999999
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHH
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 311 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~ 311 (470)
.+|--||..++ +.+|...-+..|+++=.|=+|+ +|- ...-...||++.-..+--|-+..|...+|.+...++.
T Consensus 222 GvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgN--VpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh 294 (465)
T KOG3846|consen 222 GVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGN--VPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKH 294 (465)
T ss_pred cceeecccccc----hhhhhhcccCCCcEechhhhhh-hcC--CceEEeecCCceEEEeeecccccCCCccceeeeehhh
Confidence 99999999998 9999977788899999999887 221 1122334677544455667776444366766665443
Q ss_pred HhhcCc------------------------CCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 012138 312 MLCIQP------------------------GEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 312 ~~~~~~------------------------~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 363 (470)
.....+ +..+...+ ++.+..++...+|++..+ ++++++.--+..++...++.
T Consensus 295 ~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~ 374 (465)
T KOG3846|consen 295 TKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKA 374 (465)
T ss_pred hcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHH
Confidence 332211 12233333 444566667778887765 34444444444444444443
Q ss_pred HH-hhCC-----CceEE-----EeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEec-CCCCCHHHHH
Q 012138 364 IQ-QQFP-----NYVKE-----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP-PLSISSNELQ 431 (470)
Q Consensus 364 l~-~~~p-----~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~-~~~~t~e~i~ 431 (470)
.. .++| ..+.. ...+|.-+.+.+.. ....+.++|.++|+++....+|.||++| |+..+..++.
T Consensus 375 ~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-----p~~~vfqeL~krGv~~DkR~PNvIRvAPvpLYN~f~Dvy 449 (465)
T KOG3846|consen 375 SKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-----PTPKVFQELHKRGVIGDKRRPNVIRVAPVPLYNTFSDVY 449 (465)
T ss_pred hcccCchhhhcceeEEEeCCcccccccceEEEEeCC-----CchHHHHHHHHcCeeccccCCCceEeecchhhccHHHHH
Confidence 21 1111 01211 23346666665554 3467899999999999888899999998 8999999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
.+++.|.+++. .+
T Consensus 450 ~f~n~L~e~~d-~~ 462 (465)
T KOG3846|consen 450 IFVNALNEAMD-KL 462 (465)
T ss_pred HHHHHHHHHHH-Hh
Confidence 99999999987 54
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-08 Score=104.75 Aligned_cols=275 Identities=15% Similarity=0.109 Sum_probs=162.0
Q ss_pred HHHHHHHhhhhCCCe--EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 120 PVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 120 ~~l~~~l~~~~~~~~--v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
-++...+++++|++. +-+..+++.+.|+++.+.+. ++ ..+++|++.+.. |-.+...+.....
T Consensus 112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~---~~----~~~~~vlv~~~~-hP~~~~v~~t~a~-------- 175 (939)
T TIGR00461 112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNV---SK----KKANKFFVAKDL-HPQTKSVLHTRAK-------- 175 (939)
T ss_pred HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHh---hc----CCCCEEEECCCC-CcchHHHHHHHHH--------
Confidence 356778888999874 57788888888866554332 11 123467666655 5444322221110
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
+..-++..+ |+++|++.+ +++++++.. .|-.|.+.+ +++|.++++++|.++|++.-...++-.-+
T Consensus 176 ~~g~~v~~~---~~~~l~~~~-----~~~~v~~q~-Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~-- 240 (939)
T TIGR00461 176 PFGIEVIVV---DCSDIKKAV-----DVFGCLLQY-PATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTP-- 240 (939)
T ss_pred hcCcEEEEE---cHHHHhhcC-----CEEEEEEEC-CCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCC--
Confidence 000112344 666666544 467777755 566899887 99999999999999999755442211111
Q ss_pred ccccCCCCccee-ecccccc-----CCCcceeEEEecHHHHhhcCcCCc----------------------------cCC
Q 012138 278 ASDWEEVRPDMV-ILGKALG-----GGVIPVSAVLADKEVMLCIQPGEH----------------------------GST 323 (470)
Q Consensus 278 ~~~~~~~~pdi~-s~sK~l~-----gG~~~ig~v~~~~~~~~~~~~~~~----------------------------~~t 323 (470)
...+|. |++ -.+|.++ ||. ..|++.+++++.+.+..... .+.
T Consensus 241 -Pge~Ga--Di~vg~~q~fg~p~g~GGP-~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSN 316 (939)
T TIGR00461 241 -PGHYGA--DIVLGSSQRFGVPMGYGGP-HAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSN 316 (939)
T ss_pred -HHHcCC--cEEeeCCCccCCCCCCCCC-ceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcc
Confidence 112232 655 2234444 565 57888888887776532100 011
Q ss_pred CCCCHHHHH-HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHH
Q 012138 324 FGGNPLASA-VAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 399 (470)
Q Consensus 324 ~~~~~~~~a-aa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (470)
...+...++ .+...+..+..+ ++.++...+..++.+.|.+.+- ..+.. ..|--+.+..+. .++.++.
T Consensus 317 ICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~------~~~~~-~fF~~~~v~~~~--~~~~~i~ 387 (939)
T TIGR00461 317 ICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPH------ELINK-TWFDTLTVKVGN--GISSELL 387 (939)
T ss_pred hhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccCC-CccceEEEEeCC--CCHHHHH
Confidence 111222222 222223444443 4455666777888888877432 22222 223233333221 2578899
Q ss_pred HHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 400 ~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+++.++||.+....++.+++++...+|++||+.+++.+.
T Consensus 388 ~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 388 KAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 999999999887667799999999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-07 Score=85.96 Aligned_cols=317 Identities=16% Similarity=0.207 Sum_probs=176.6
Q ss_pred CcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
..+..|++...+.+|.+.++.|.-|-.|-...+..+++.+-.. || .+.+.+++.|.-.+.+-....+. ..+.-+
T Consensus 79 rs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~----pg-~~~~~~sN~~FdTTr~h~~~ng~-~~~n~~ 152 (471)
T COG3033 79 RSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQE----PG-SKMVAFSNYHFDTTRGHIQINGA-TPRNVY 152 (471)
T ss_pred ccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhcccc----CC-ccccccccceecchhHHHHhcCC-cccccc
Confidence 3457888889999999999999988888777766666532222 34 35666665542222222222111 011111
Q ss_pred CCCCCC-eeeecCC---CHHHHHHHHHhcC-CCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-
Q 012138 197 GPLLPG-HLKVDFG---DITALEKIFKESG-DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG- 269 (470)
Q Consensus 197 ~~~~~~-~~~~~~~---d~~~Le~~l~~~~-~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g- 269 (470)
.+.-.+ .+..|+. |++.|+++|++-+ +++..|++.- .|+.+|.-. +-+-++++.++|++||+.++.|.+...
T Consensus 153 ~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpV-Sm~n~r~v~~ia~ky~ipvv~Da~RfaE 231 (471)
T COG3033 153 VDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPV-SMANMKAVYEIAKKYDIPVVMDAARFAE 231 (471)
T ss_pred ccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcc-hHHhHHHHHHHHHHcCCcEEeehhhhhh
Confidence 111000 1122221 8999999999876 4566666443 355678777 999999999999999999999987641
Q ss_pred ---CcccCCccccccCCCC---------cceeecc-ccccCCCcceeE-EEecHH----HHhhcCc----CCccCCCCC-
Q 012138 270 ---LARSGRMLASDWEEVR---------PDMVILG-KALGGGVIPVSA-VLADKE----VMLCIQP----GEHGSTFGG- 326 (470)
Q Consensus 270 ---~g~~G~~~~~~~~~~~---------pdi~s~s-K~l~gG~~~ig~-v~~~~~----~~~~~~~----~~~~~t~~~- 326 (470)
|-..-. -.+..|.+. .|-.++| |. -|+..+|. ++.+++ +...++. .....||++
T Consensus 232 NaYFIk~rE-~gYrd~sI~~IarEm~sYaD~~~mS~KK--D~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl 308 (471)
T COG3033 232 NAYFIKQRE-PGYRDWSIEEIAREMYSYADGCTMSAKK--DGLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGL 308 (471)
T ss_pred hhhhhhhcC-cccccccHHHHHHHHHhhhhhheeeccc--cceeccccEEEecCccHHHHHHHHHhheEeeccccccCcc
Confidence 211100 011222221 1333443 21 12224443 444433 3333321 123344542
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-------chhHHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-------PVSAYDIC 399 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~ 399 (470)
..-.+.+....|..--+.++.++.-+-.++|.++|.+. .+..+.+.|..-.+ ++.... ...++.++
T Consensus 309 ~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~------GVpi~~paGGHavf-vda~~~lphip~eqFpaqala 381 (471)
T COG3033 309 AGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA------GVPIVQPAGGHAVF-VDAGKFLPHIPAEQFPAQALA 381 (471)
T ss_pred cchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc------CCeeEecCCCceEE-eehhhhcCCCChhhCcHHHHH
Confidence 22223333333443334455566666678888888885 34344455444333 332211 13466777
Q ss_pred HHHHHc-CceeccC-----------------CCCEEEEecCC-CCCHHHHHHHHHHHHHHHhcccCCCCCC
Q 012138 400 LKMKER-GILAKPT-----------------HDTIVRLTPPL-SISSNELQEGSKALHDVLELDLPKMRKP 451 (470)
Q Consensus 400 ~~l~~~-Gv~~~~~-----------------~~~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~~~~ 451 (470)
-+|... ||-+.-- .-..+|+.+|. +.|.+++|..++.++++.+ +...++-.
T Consensus 382 ~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e-~~~~ikgL 451 (471)
T COG3033 382 CELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE-NAEDIKGL 451 (471)
T ss_pred HHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh-ccccCCCc
Confidence 777555 8765311 13679998765 4689999999999999998 66555443
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-08 Score=99.53 Aligned_cols=234 Identities=20% Similarity=0.154 Sum_probs=129.4
Q ss_pred cHHHHHHHHhhhhCCC---------eEEecCChhHHHHHHHHHHHHhchhc---ccCCCCCcEEEEEccCccccccchhc
Q 012138 118 KFPVFAERLTSMFGYD---------MVLPMNTGAEGVETALKLARKWGYVK---KKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~---------~v~~~~sGteA~~~al~~~~~~~~~~---~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
...++.+++++++|.+ .-++|+|||+||..|+.++|.+.... ++.+...+.++.....-|-+...+..
T Consensus 80 ~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~ 159 (373)
T PF00282_consen 80 IEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAAR 159 (373)
T ss_dssp HHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHH
T ss_pred chHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcc
Confidence 3456667888888765 36899999999999999998753221 12110223455555544776666655
Q ss_pred ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC--CCeE-EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 186 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG--DQIA-GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~--~~~~-~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
+-+-.....+..+ ...+ |+++|+++|++.. ..+. +|+..--...+|.+-| +++|.++|++|+++|+
T Consensus 160 ~lGlg~~~I~~~~----~~~m---d~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlH 228 (373)
T PF00282_consen 160 ILGLGVRKIPTDE----DGRM---DIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLH 228 (373)
T ss_dssp HTTSEEEEE-BBT----TSSB----HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEE
T ss_pred eeeeEEEEecCCc----chhh---hHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhccccceeee
Confidence 5543311110000 0112 7899999987632 2233 4555555667899998 9999999999999999
Q ss_pred EeccccCCcccCCccccccCCCC-cceeec--cccccCCCcceeEEEecHH--HHhhcC--c-CCc-------------c
Q 012138 263 ADEIQSGLARSGRMLASDWEEVR-PDMVIL--GKALGGGVIPVSAVLADKE--VMLCIQ--P-GEH-------------G 321 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~~~~~~~~~-pdi~s~--sK~l~gG~~~ig~v~~~~~--~~~~~~--~-~~~-------------~ 321 (470)
+|.+++|....-+.+..-..++. .|-+++ -|.+...+ +.|+++.+.. +.+.+. . +.. .
T Consensus 229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~-~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~ 307 (373)
T PF00282_consen 229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY-GCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGD 307 (373)
T ss_dssp EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS-S-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEE
T ss_pred ecccccccccccccccccccccccccccccchhhhhcCCc-cceeEEeecccchHHHhccChhhhccccccccccccccc
Confidence 99999973221111111112221 354443 48888777 8999887653 222221 0 000 0
Q ss_pred CCCCCC-HHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHH
Q 012138 322 STFGGN-PLASAVAIASLDVIRDEKLAERS---AHLGEELRQHLFK 363 (470)
Q Consensus 322 ~t~~~~-~~~~aaa~a~l~~~~~~~~~~~~---~~~~~~l~~~L~~ 363 (470)
.++.++ ......++.+|+.+..+.+.+.+ .++++++.+.|++
T Consensus 308 ~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~ 353 (373)
T PF00282_consen 308 YTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRK 353 (373)
T ss_dssp GSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222 34445556666766665555544 4455555555554
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-07 Score=92.52 Aligned_cols=278 Identities=15% Similarity=0.144 Sum_probs=137.2
Q ss_pred HHHHHHHHhhhhCCCeE--EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 119 FPVFAERLTSMFGYDMV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v--~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
.-++...+++++|++.+ -+..+++.+-|+++.+.+. +++ .+++|++.... |..+...+.....+.
T Consensus 112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~---~~~----~~~~vlv~~~~-hP~~~~v~~t~a~~~----- 178 (429)
T PF02347_consen 112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRA---TKR----KRNKVLVPESL-HPQTRAVLRTYAAPL----- 178 (429)
T ss_dssp HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHH---HTT-------EEEEETTS--CHHHHHHHHHCCHC-----
T ss_pred HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHh---ccc----CCcEEEEcCCc-ChhhHHHHHHhhhhC-----
Confidence 34678889999999864 5566777777765444443 111 22366665554 666554433222110
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.-+++.++.++-.... .+++++|+++. .|-.|.+.+ +++|.++++++|.++|+ -+ ..--.+-+
T Consensus 179 ---g~~iv~~~~~~~~~~d------~~~~a~v~vq~-Pn~~G~~ed----~~~i~~~~h~~gal~~~-~a--d~~aL~~l 241 (429)
T PF02347_consen 179 ---GIEIVEVPLDEDGTTD------DDDTAAVMVQN-PNTFGVFED----IKEIADIAHAAGALVIV-GA--DPNALGGL 241 (429)
T ss_dssp ---CEEEEEE-BBTTCSB-------STTEEEEEEES-S-TTSB--T----HHHHHHHHHHTT-EEEE-CG--GCCGCCTC
T ss_pred ---CeEEEEecccccCCcc------ccCeEEEEeec-CCCCceEee----HHHHHHHHHHcCCEEEE-ec--CHHHHhCc
Confidence 0112333322111000 24899999877 566899886 99999999999999987 22 11111111
Q ss_pred cccccCCCCccee-ecccccc-----CCCcceeEEEecHHHHhhcCcC----------------------------CccC
Q 012138 277 LASDWEEVRPDMV-ILGKALG-----GGVIPVSAVLADKEVMLCIQPG----------------------------EHGS 322 (470)
Q Consensus 277 ~~~~~~~~~pdi~-s~sK~l~-----gG~~~ig~v~~~~~~~~~~~~~----------------------------~~~~ 322 (470)
-.-..+|. ||+ -.+|.|| ||- ..|.+.++++++..+... ...+
T Consensus 242 ~~Pge~GA--DI~vg~~Q~fg~p~~~GGP-~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtS 318 (429)
T PF02347_consen 242 KSPGEYGA--DIVVGEHQTFGIPMGFGGP-GAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATS 318 (429)
T ss_dssp --GGGGT---SEEEECCTTTT---CCC-S---EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT
T ss_pred CChhhcCc--cEEeeCCCCCcccCCCCCC-CeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhh
Confidence 11122333 665 2245555 666 788888988877766211 0122
Q ss_pred CCCCCHHHHH-HHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHH
Q 012138 323 TFGGNPLASA-VAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 398 (470)
Q Consensus 323 t~~~~~~~~a-aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 398 (470)
.++.|...++ ++...+..+.. .++.++...++.++.++|.++ ...+ -....|+-+.+.... .....++
T Consensus 319 NIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~~------~~~~~f~e~v~~~~~-~~~~~~l 390 (429)
T PF02347_consen 319 NICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGLP------FDNPFFFEFVVVFSK-DKEVEEL 390 (429)
T ss_dssp ---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBEC------SSSSSBSSEEEEESS--HHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc------cCCCCceeeeeecCC-cHHHHHH
Confidence 3334444433 34444555555 345566777888888888774 1111 111122222122221 1233446
Q ss_pred HHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 399 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.+++...|+.......+.+-+++.-.+|+||||.++++|
T Consensus 391 ~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 391 LKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp HHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred HHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 666666675554444569999999999999999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-07 Score=86.45 Aligned_cols=280 Identities=20% Similarity=0.210 Sum_probs=165.1
Q ss_pred HHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCC
Q 012138 121 VFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 198 (470)
Q Consensus 121 ~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 198 (470)
++...+++++|++ ..-....+|.+-|+++.+-+. ++ .+++++++.... |-.+...+..-.. +
T Consensus 124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~---~k----~k~~~~~V~~~v-hpqt~~Vl~Tra~--------~ 187 (450)
T COG0403 124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRV---TK----KKRNKFLVPKDV-HPQTLDVLRTRAE--------G 187 (450)
T ss_pred HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHh---hc----CcCceEEecCCC-CHHHHHHHHhhcc--------c
Confidence 3445677777766 355666777777766654443 11 124466665555 6665555433221 1
Q ss_pred CCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCc-cccCChhhHHHHHHHHHhcCcEEEEe--ccccCC-cccC
Q 012138 199 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAG-VIIPPDGYLKAVRDLCSKYNILMIAD--EIQSGL-ARSG 274 (470)
Q Consensus 199 ~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G-~~~~~~~~l~~l~~l~~~~gillI~D--ev~~g~-g~~G 274 (470)
+.-.+...+++|.++|+++ ++ ..+.+++++. .|-.| .+.+ +++|.+.++++|+++++= -.--++ -..|
T Consensus 188 ~g~~i~~~~~~d~~~l~~~-~~--~~~~gv~vQy-P~~~G~~~~d----~~~l~~~~h~~~al~~v~aDplaL~LL~pPG 259 (450)
T COG0403 188 LGIEIEVVDADDLDDLESA-DD--GDVFGVLVQY-PNTFGIVEED----LRALIEAAHSAGALVIVAADPLALGLLKPPG 259 (450)
T ss_pred CceEEEEeccchhhhhhhc-cc--cCeEEEEEec-CCCCCccchh----HHHHHHHHhhcCCEEEEEechhHhhccCCcc
Confidence 1122455666688888887 43 2789999988 44556 5555 999999999999987762 111121 1222
Q ss_pred CccccccCCCCccee-----ecccccc-CCCcceeEEEecHHHHhhcCcCC-----------------------------
Q 012138 275 RMLASDWEEVRPDMV-----ILGKALG-GGVIPVSAVLADKEVMLCIQPGE----------------------------- 319 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~-----s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~----------------------------- 319 (470)
.+ | .||+ -|+=.++ ||. ..|++.+++++...+ |+.
T Consensus 260 e~------G--ADIvvG~~QrfGvPmgfGGP-hag~fA~~~~~~R~m-PGRlVG~S~D~~G~~A~rLaLQTREQHIRReK 329 (450)
T COG0403 260 EF------G--ADIVVGSAQRFGVPMGFGGP-HAGYFAVKDEFKRQM-PGRLVGVSVDAAGKRAFRLALQTREQHIRREK 329 (450)
T ss_pred cc------C--CceEEecCcccCCCcCCCCc-ceeeeeEhHhHhhcC-CCceeeeeecCCCCchhhhhHHHHHHHHhhhc
Confidence 22 2 2554 4555555 776 888888998887665 221
Q ss_pred ccCCCCCCHHHHHHHHH-HHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhH
Q 012138 320 HGSTFGGNPLASAVAIA-SLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 395 (470)
Q Consensus 320 ~~~t~~~~~~~~aaa~a-~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 395 (470)
..++.+.|....|.+.+ .+-++.. .++.++..++..++.++|++... .+..+.. ..|--+.+..+. ...
T Consensus 330 ATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~----g~~~~~~-~fFdt~~v~~~~--~~~ 402 (450)
T COG0403 330 ATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGA----GVELVFD-HFFDTFTVRVPE--EVA 402 (450)
T ss_pred cchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCC----ceEeccc-cceeeEEEecch--hHH
Confidence 11222223332222222 2222333 44666777788888888886532 1222222 333333333321 246
Q ss_pred HHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 396 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 396 ~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+.++....|+-+..-....+-++..-.+|+++|+.+++.+....
T Consensus 403 ~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 403 EALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred HHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 6677777777888776666688888888899999999999987654
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-07 Score=91.16 Aligned_cols=293 Identities=12% Similarity=0.100 Sum_probs=158.2
Q ss_pred CCCcHHHHHHHHhhhhCCCe-EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC-ccc
Q 012138 115 YNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEA 192 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~~~~-v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~ 192 (470)
+.....+.++..++.+|.++ .+.+||-|.||..++..+.. +|+ .|++..++ |-+...++-+++. |.+
T Consensus 68 p~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~---------~GD-~VLvdRN~-HKSi~~glilaGa~Pvy 136 (557)
T COG1982 68 PEGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLT---------PGD-KVLVDRNC-HKSIHHGLILAGATPVY 136 (557)
T ss_pred CCccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcC---------CCC-EEEecCCc-cHHHHHHHHHcCCceEE
Confidence 34557788888999999986 45557777777777776654 455 77777776 8887777666654 333
Q ss_pred ccCCC-CCCCCeeeecCCCHHHHHHHHHhcCCC-eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-
Q 012138 193 IRGFG-PLLPGHLKVDFGDITALEKIFKESGDQ-IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG- 269 (470)
Q Consensus 193 ~~~~~-~~~~~~~~~~~~d~~~Le~~l~~~~~~-~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g- 269 (470)
..+.. +...=...+ +.+.+++.+.++... ..+|+.+| +-.|.++. +++|++.+.++++++.+||++.-
T Consensus 137 l~p~~np~~gi~ggI---~~~~~~~~l~~~~~~~k~~vitnp--TYdGv~~n----~~~i~~~~~~~~a~v~~deah~~~ 207 (557)
T COG1982 137 LEPSRNPLYGIIGGI---PLETFKEALLAHPDAEKLAVITNP--TYDGVCYN----LRKIVELLHHYGAWVLYDEAHPAH 207 (557)
T ss_pred ecCCCCccccccCCC---CHHHHHHHHHhChhhheeEEEecC--ccceEeec----HHHHHHHHhhcCceEEhhhcCccc
Confidence 22111 100001222 789999888876544 34555555 34699998 99999999999999999999972
Q ss_pred CcccCCccccccCCCCcceeecc--ccccCCCcceeEEEec-------HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH
Q 012138 270 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-------KEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~-------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 340 (470)
++..+.... ...+...|+++-| |.+++.- -.+.+-.+ +.+-+.+. ...+-+++-..+|..-. -+.
T Consensus 208 ~~~~~~l~~-~~~~~~~~~~tqS~HK~l~alS-QaS~iHv~~~~~~~~~r~nea~~---~h~STSPsY~l~ASlD~-Ar~ 281 (557)
T COG1982 208 FDFSPMLPE-SALNGGADFVTQSTHKLLAALS-QASMIHVKDGRAVNHERFNEALM---MHQSTSPSYPLMASLDV-ARM 281 (557)
T ss_pred ccccccCcc-hhhhcCceEEEechhhhhhhhh-hhHHHhhCCCccCCHHHHHHHHH---HHccCCchHHHHHHHHH-HHH
Confidence 333333322 1111233666555 6665321 22333333 23333332 22333444455554444 232
Q ss_pred Hhh---hhH----HHHHHHHHHHHHHHHHHHHhhCCCceEEEecc------c---------eeEEE-----EeccCCCch
Q 012138 341 IRD---EKL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGR------G---------LFNAV-----EFDKTALPV 393 (470)
Q Consensus 341 ~~~---~~~----~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~------g---------~~~~~-----~~~~~~~~~ 393 (470)
+.. ..+ .+..-+.++.+++...++. ++..+.+. + ..+.+ .+..+..|.
T Consensus 282 ~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gi 356 (557)
T COG1982 282 QEGNAGRELWQEVIDEAIDFRKALRRLINEIG-----FFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGI 356 (557)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----CeeeccccccCCcccccccccccccceeccccEEEEecCCCCC
Confidence 222 223 2333334444444443332 22211111 1 01111 011112367
Q ss_pred hHHHHHHHHHHcCceeccCCCCEEEEecCC--CCCHHHHHHHHHHHH
Q 012138 394 SAYDICLKMKERGILAKPTHDTIVRLTPPL--SISSNELQEGSKALH 438 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~--~~t~e~i~~~~~~l~ 438 (470)
.+..+++.|+++|++..-.+...+-|.++. ......++.+++.+.
T Consensus 357 pg~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r 403 (557)
T COG1982 357 PGAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR 403 (557)
T ss_pred cHHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence 889999999999998876665544443322 233444444444444
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-07 Score=88.58 Aligned_cols=202 Identities=18% Similarity=0.241 Sum_probs=111.3
Q ss_pred CHHHHHHHHHH-HHHccc--cCCCCCCCc-HHHHHHHHhhhhCCCeEEec---CChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQ-AEKLTL--SSRAFYNDK-FPVFAERLTSMFGYDMVLPM---NTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~-~~~~~~--~~~~~~~~~-~~~l~~~l~~~~~~~~v~~~---~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
..+|++|+++. +....+ ++...+.+. ++.|++-+++.++.+..++= -|||.|+..+|...++ ||
T Consensus 26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~Lr---------pG 96 (403)
T PF06838_consen 26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLR---------PG 96 (403)
T ss_dssp HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH-----------TT
T ss_pred HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCC---------CC
Confidence 34566666552 222111 122223443 78899999999999886643 5899999999998877 67
Q ss_pred CcEEEEEccCccccccchhcccCC-cccccCC------CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 012138 166 EAIIVSCCGCFHGRTLAAISMSCD-NEAIRGF------GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G 238 (470)
| .+++..+.=.-.....+.+.++ +.....| .++.++. .+ |.+.++++++. ++++|++.---+-.-
T Consensus 97 D-~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg-~~---D~~~i~~~~~~---~tk~v~IQRSrGYs~ 168 (403)
T PF06838_consen 97 D-ELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDG-TI---DWEAIKKALKP---NTKMVLIQRSRGYSW 168 (403)
T ss_dssp --EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTS-SB----HHHHHHHHHT---TEEEEEEE-S-TTSS
T ss_pred C-eEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCC-Cc---CHHHHHHhhcc---CceEEEEecCCCCCC
Confidence 7 6665443311111122222221 1111111 1111111 11 89999999986 899999865222222
Q ss_pred cccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCccee-EEEecHHHHh
Q 012138 239 VIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS-AVLADKEVML 313 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig-~v~~~~~~~~ 313 (470)
.-.-+.+.++++.+++|+. ++++++|.+|..|..+- +...+-.|++ |+-|..|||+.|.| +|++++++++
T Consensus 169 R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~-----EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe 243 (403)
T PF06838_consen 169 RPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ-----EPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVE 243 (403)
T ss_dssp S----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS------GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc-----CccccchhheeccceeCCCCCccCcCCEEechHHHHH
Confidence 2222566677777777764 68999999999885442 3233445776 88899999986665 6789999988
Q ss_pred hcC
Q 012138 314 CIQ 316 (470)
Q Consensus 314 ~~~ 316 (470)
...
T Consensus 244 ~~a 246 (403)
T PF06838_consen 244 RAA 246 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-07 Score=85.32 Aligned_cols=270 Identities=15% Similarity=0.145 Sum_probs=148.3
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCc-----cccccchhcccCCcccccCCC-CCCCCeeeecCC
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF-----HGRTLAAISMSCDNEAIRGFG-PLLPGHLKVDFG 209 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~y-----hg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 209 (470)
+-.-||+.||..+..++.. |++ .|...+-.- ||.......+++...+...+. .+.+....+
T Consensus 110 VQp~SGSPANfavYtall~---------Ph~-RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~I--- 176 (477)
T KOG2467|consen 110 VQPYSGSPANFAVYTALLK---------PHE-RIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYI--- 176 (477)
T ss_pred eccCCCCchhhHHHhhhcC---------CCC-eeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCce---
Confidence 3445889999988887765 454 555533321 444333333333222211100 011223333
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCcc-ccccCCCCcc
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML-ASDWEEVRPD 287 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~-~~~~~~~~pd 287 (470)
|.|.||+....- ++++||+-. +..-..++ ..+++++|++.|++|++|=+|. |+...|... -+++. |
T Consensus 177 DYD~Le~~A~~f--rPk~iiaG~--SaY~R~~D----YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~----D 244 (477)
T KOG2467|consen 177 DYDKLEKTATLF--RPKLIIAGT--SAYSRLID----YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC----D 244 (477)
T ss_pred ehHHHHHHHHhc--CCcEEEecc--ccchhhcc----HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----c
Confidence 788898877664 677888633 22223343 8999999999999999999987 665444331 13332 6
Q ss_pred eee--ccccccCCCcceeEEEecHHHHh---------------hcC----cCCccCCCCCCHHHHHHHHHHHHHHhh---
Q 012138 288 MVI--LGKALGGGVIPVSAVLADKEVML---------------CIQ----PGEHGSTFGGNPLASAVAIASLDVIRD--- 343 (470)
Q Consensus 288 i~s--~sK~l~gG~~~ig~v~~~~~~~~---------------~~~----~~~~~~t~~~~~~~~aaa~a~l~~~~~--- 343 (470)
+++ .-|+|-|. |.|.|..++-+.. ++. |+.+++..+ -.+++...+|+....
T Consensus 245 iVTTTTHKsLRGP--Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHN---htIaalAvALkQa~tpef 319 (477)
T KOG2467|consen 245 IVTTTTHKSLRGP--RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHN---HTIAALAVALKQAMTPEF 319 (477)
T ss_pred eeeccccccccCC--cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCc---chHHHHHHHHHhhCCHHH
Confidence 764 44888764 5566665543221 111 112222222 233333334554333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-chhHHHHHHHHHHcCceec----cC-----C
Q 012138 344 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAK----PT-----H 413 (470)
Q Consensus 344 ~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~----~~-----~ 413 (470)
..+.+++..++..|.+.|.+.+-+ .+.. .....++.|.+..... +...+.+++.+ +|.+. |+ .
T Consensus 320 k~Yq~qV~~Nakala~~l~~~Gy~---lvtg-GTDnHlvLvDLr~~G~dGarvE~vle~~---~I~~NKNtvpGD~Sal~ 392 (477)
T KOG2467|consen 320 KEYQKQVLKNAKALASALISRGYK---LVTG-GTDNHLVLVDLRPKGVDGARVEKVLELC---HIALNKNTVPGDKSALS 392 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCce---EecC-CccceEEEEeccccCCchHHHHHHHHHh---hhhhcCCcCCCCccccC
Confidence 446677777888888888775432 1221 1234566666644331 22333444433 44332 33 3
Q ss_pred CCEEEEecCCCC----CHHHHHHHHHHHHHHHh
Q 012138 414 DTIVRLTPPLSI----SSNELQEGSKALHDVLE 442 (470)
Q Consensus 414 ~~~iR~~~~~~~----t~e~i~~~~~~l~~~l~ 442 (470)
++-+|+..|..+ .++|.++..+-|.++++
T Consensus 393 PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 393 PGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 677999776554 47888888888887776
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-06 Score=82.01 Aligned_cols=331 Identities=18% Similarity=0.180 Sum_probs=181.1
Q ss_pred CHHHHHHHHHHHHHcccc-CCCC--CCCcHHHHHHHHhhhhCCC-e--EEecCChhHHHHHHHHHHHHhchhcccCCCCC
Q 012138 93 HPKIMKALQEQAEKLTLS-SRAF--YNDKFPVFAERLTSMFGYD-M--VLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~-~~~~--~~~~~~~l~~~l~~~~~~~-~--v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~ 166 (470)
+++..+-+.+.+..++.. ...+ ......+.-..++.+++.. . =.-|.||||++.++.+.-+......+++ ..
T Consensus 93 ~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I--~~ 170 (491)
T KOG1383|consen 93 EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI--DK 170 (491)
T ss_pred CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCC--CC
Confidence 566666666666654221 1111 1223345555666666322 2 2456789999777777655432222332 12
Q ss_pred cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
..|++.... |-....+...-. .+..-.++.++...+ |+..+.+.+++ +|.+++.+-.+-|+|.+-+
T Consensus 171 p~iv~~~~v-~~a~eK~a~yf~---v~l~~V~~~~~~~~~---D~~k~~~~i~e---Nti~lv~~~~~~p~G~~e~---- 236 (491)
T KOG1383|consen 171 PNIVTPQNV-HAAFEKAARYFE---VELREVPLDEGDYRV---DPGKVVRMIDE---NTIMLVGSLPNFPTGEIED---- 236 (491)
T ss_pred ccccchHHH-HHHHHHHHhhEE---EEEEeeeccccceEe---cHHHHHHHhcc---ceEEEEEEcCCCCccchhh----
Confidence 234433222 322111111000 011112222333444 88999998887 8889887777999999887
Q ss_pred HHHHHHHHHh-cCcEEEEeccccCCccc-CCccccccCCCC-c---ceeecc-c-cccCCCcceeEEEe-cHHHH-hhcC
Q 012138 247 LKAVRDLCSK-YNILMIADEIQSGLARS-GRMLASDWEEVR-P---DMVILG-K-ALGGGVIPVSAVLA-DKEVM-LCIQ 316 (470)
Q Consensus 247 l~~l~~l~~~-~gillI~Dev~~g~g~~-G~~~~~~~~~~~-p---di~s~s-K-~l~gG~~~ig~v~~-~~~~~-~~~~ 316 (470)
+++|.++.-+ +++++.+|.+-+||--. +.. ....|++. | .+.+-+ | ++..- .++|++- ++++. +.+.
T Consensus 237 ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~-~~~~fdFr~p~V~Sisa~~HKYGl~~~--G~~~vl~r~k~~~~~q~~ 313 (491)
T KOG1383|consen 237 VEKLADLLLEIWDIPIHVDACLGGFINPAGYL-NEEEFDFRVPGVTSISADGHKYGLAPA--GSSWVLYRNKELLPHQLF 313 (491)
T ss_pred HHHHHHHHHHHhCCceeecccCcccccccccc-CccccccCCCCceeEeeccceeeeeec--CcEEEEEcccccccceEE
Confidence 9999999999 99999999999887543 211 11223332 2 222223 2 23311 3456663 33332 2111
Q ss_pred --cCCccC-----C--CCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 317 --PGEHGS-----T--FGGNPLASAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 317 --~~~~~~-----t--~~~~~~~~aaa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
....|+ | ++-+....++.++++-.+..++ ..+++.+....++++++++. .+.. .+...+..+
T Consensus 314 ~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~-----~i~i-~gkp~vs~~ 387 (491)
T KOG1383|consen 314 FHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIK-----GIKI-VGKPLVSFI 387 (491)
T ss_pred EeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccc-----ccee-cCCCcEEEE
Confidence 001111 1 1222234444555554444443 44556667778888887743 2332 234444444
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccC-CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhcccCCCCCC
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNE-LQEGSKALHDVLELDLPKMRKP 451 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~~~~t~e~-i~~~~~~l~~~l~~~~~~~~~~ 451 (470)
.++... .+-.++.+.|+++|..+... -+..+.+++...+..++ .++++.-|+++++ ++......
T Consensus 388 ~~~s~~--~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~-el~~~p~~ 453 (491)
T KOG1383|consen 388 LFGSND--VNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVADIRKVVE-ELKSLPES 453 (491)
T ss_pred EccCCc--cchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHH-HHHhCCCc
Confidence 333332 46778999999999887532 24466777667777666 5888889999999 88766553
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-05 Score=80.55 Aligned_cols=234 Identities=17% Similarity=0.116 Sum_probs=132.5
Q ss_pred CcHHHHHHHHhhhhCCCe--EEecCChhHHHHHHHHHHHHhchh---cccCCC---------------------------
Q 012138 117 DKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYV---KKKFSI--------------------------- 164 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~--v~~~~sGteA~~~al~~~~~~~~~---~~~~~~--------------------------- 164 (470)
....++.+++++++|++. -.||+|||+||..+|.+||..... .+...+
T Consensus 123 ~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~ 202 (608)
T TIGR03811 123 QMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAG 202 (608)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccc
Confidence 445677788999988654 468999999999999999873100 000000
Q ss_pred -----------------CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc-
Q 012138 165 -----------------DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES- 221 (470)
Q Consensus 165 -----------------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~- 221 (470)
.+-.++..+..-|-+...+..+-+-.. ..++.+|.+ |+++|+++|++.
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~---------~~vv~VpvD~~~rmd~~~L~~~I~~~~ 273 (608)
T TIGR03811 203 DQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGL---------DQVIPVPVDSNYRMDINELEKIIRKLA 273 (608)
T ss_pred cchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCc---------ccEEEeecCCCCcCCHHHHHHHHHHHH
Confidence 000022233233544444433332210 113344432 799999998752
Q ss_pred --CCCeEEEEEccccCCCccccCChhhHHHHHHHH---HhcCc--EEEEeccccCCccc------CCccc----------
Q 012138 222 --GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC---SKYNI--LMIADEIQSGLARS------GRMLA---------- 278 (470)
Q Consensus 222 --~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~---~~~gi--llI~Dev~~g~g~~------G~~~~---------- 278 (470)
+..+-+|+..--...+|.+-| +++|.++| +++|+ +|++|.+++|+.+. +.+..
T Consensus 274 ~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~ 349 (608)
T TIGR03811 274 AEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAE 349 (608)
T ss_pred hcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccc
Confidence 234556665554677899998 88888888 77898 69999999986311 00000
Q ss_pred ---c-------------ccCCC-Ccceeecc--ccccCCCcceeEEEecHH-HHhhcCc---CC--cc---------CCC
Q 012138 279 ---S-------------DWEEV-RPDMVILG--KALGGGVIPVSAVLADKE-VMLCIQP---GE--HG---------STF 324 (470)
Q Consensus 279 ---~-------------~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~~~~-~~~~~~~---~~--~~---------~t~ 324 (470)
+ ...++ ..|-+++- |.+.-.+ +.|+++.+.. +.+.+.. +. .+ .+.
T Consensus 350 ~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py-~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~l 428 (608)
T TIGR03811 350 YGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPY-SAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYIL 428 (608)
T ss_pred ccccccccccccHhHHHHHhcCcCceEEEeCcccccccCC-CeEEEEEeCHHHHHHHhcCcchhccccccCcccccccce
Confidence 0 00122 13444443 7666666 8888887643 3332211 10 00 111
Q ss_pred CCCH--HHHHHHHHHHHHH--hh---hhHHHHHHHHHHHHHHHHHHH
Q 012138 325 GGNP--LASAVAIASLDVI--RD---EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 325 ~~~~--~~~aaa~a~l~~~--~~---~~~~~~~~~~~~~l~~~L~~l 364 (470)
.++. ..+++.+.+++.+ .. ..+.++..++++++.+.|++.
T Consensus 429 egSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 429 EGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred ecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2332 3355666777776 33 456677777888888888774
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-06 Score=80.92 Aligned_cols=221 Identities=14% Similarity=0.134 Sum_probs=123.7
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc---CCc-cccccCCCC
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS---GRM-LASDWEEVR 285 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~---G~~-~~~~~~~~~ 285 (470)
|.+++|+++++.+....+.+++......+... +.+++|.++|++|||+.|+-.+|+ +--. ... -+.. .|..
T Consensus 140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~---D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~~-~GRv 214 (389)
T PF05889_consen 140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLP---DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAWR-VGRV 214 (389)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHHH-HSTC
T ss_pred cHHHHHHHHHHhCCCCeEEEEEecCccCCCCC---ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHHh-cCCc
Confidence 68999999987765544555544354455543 359999999999999999999986 2000 000 0001 1222
Q ss_pred -cceeecccccc---CCCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q 012138 286 -PDMVILGKALG---GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEEL 357 (470)
Q Consensus 286 -pdi~s~sK~l~---gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l 357 (470)
.++-++.|-|= ||- .+. .++..++.+....-+..+..+.+- ....|..+.. ..+.....+.-.++
T Consensus 215 da~vqS~dkNF~VPvGga----i~As~~~~~i~~vs~~YpGRas~sp~ld---~~itLl~LG~~g~~~ll~~r~~~f~~l 287 (389)
T PF05889_consen 215 DAFVQSTDKNFMVPVGGA----IMASFDPSGILAVSKEYPGRASASPSLD---LFITLLSLGCTGYGALLKERKASFPYL 287 (389)
T ss_dssp SEEEEEHHHHHCEESSHE----EEEESSHHHHHHHHHTSHSHBTSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecCCCEEecCCCc----EEEecCHHHHHHHHHHhhhhhhcccchH---HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 23446667654 332 233 345555555432222222222221 2233333333 45666777788888
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHHHHcCce----eccCC-----------CCEEEEe
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGIL----AKPTH-----------DTIVRLT 420 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~----~~~~~-----------~~~iR~~ 420 (470)
.++|+++..++...+...+.+...+.+.+..-.. ..+...+...|+.+||. +.+.+ ..++-++
T Consensus 288 ~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~A 367 (389)
T PF05889_consen 288 KERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAA 367 (389)
T ss_dssp HHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHH
Confidence 8999988877542333333444445555542110 12567889999999775 22221 2788887
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 012138 421 PPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
-.+.+++|||+.++++|+++++
T Consensus 368 saiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 368 SAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp E-TT--HHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhC
Confidence 7889999999999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-05 Score=84.20 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=153.6
Q ss_pred HHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 120 PVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 120 ~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
-++...+++++|++ ..-+...+|.+-|+++ ++.++ +++ .++++++.+.. |-.+...+..-...
T Consensus 127 ~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~-ma~~~--~~~----k~~~~~v~~~~-hP~~~~v~~t~~~~------- 191 (954)
T PRK12566 127 LNFQQMTIDLTGLDLANASLLDEATAAAEAMA-LAKRV--AKS----KSNRFFVDEHC-HPQTLSVLRTRAEG------- 191 (954)
T ss_pred HHHHHHHHHHhCchhhhhhhccchhHHHHHHH-HHHHH--hhc----CCCEEEECCCC-CHHHHHHHHHhhhc-------
Confidence 35666788888887 4466667777766444 34432 111 13456555544 54444332211110
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
.+ ..+ -.+++++.+.+ ++.+|++.. .|-.|.+.+ +++|.++++++|+++|+-----.++- +-
T Consensus 192 ---~g-~~i---~~~~~~~~~~~---~~~~v~vq~-P~~~G~i~d----~~~i~~~~h~~gal~~~~~d~laL~l---l~ 253 (954)
T PRK12566 192 ---FG-FEL---VVDAVDNLAAH---AVFGALLQY-PDTHGEIRD----LRPLIDQLHGQQALACVAADLLSLLV---LT 253 (954)
T ss_pred ---CC-cEE---EEcchhhcCCC---CEEEEEEEC-CCCceEEcc----HHHHHHHHHHcCCEEEEEeCHHHHhC---CC
Confidence 00 111 12445554443 688998866 456898886 99999999999998774211101111 10
Q ss_pred ccccCCCCccee-----ecccccc-CCCcceeEEEecHHHHhhcCcCC----------------------------ccCC
Q 012138 278 ASDWEEVRPDMV-----ILGKALG-GGVIPVSAVLADKEVMLCIQPGE----------------------------HGST 323 (470)
Q Consensus 278 ~~~~~~~~pdi~-----s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~----------------------------~~~t 323 (470)
.-..+| .||+ .|+-.++ ||- ..|++.+++++...+.... ..+.
T Consensus 254 ~Pge~G--ADI~vG~~Q~fGvp~~~GGP-~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSN 330 (954)
T PRK12566 254 PPGELG--ADVVLGSTQRFGVPMGYGGP-HAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSN 330 (954)
T ss_pred ChhhcC--CcEEeeCCCcCCCCCCCCCC-CeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccch
Confidence 111223 2664 3444444 665 6888888888777663210 1122
Q ss_pred CCCCHHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHH
Q 012138 324 FGGNPLASAVAIASL-DVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 399 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l-~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (470)
.+.+...+|.+.+.. -++..+. +.++...+..++.+.|.+.+.+ ... ...|--+.+.... .+.++.
T Consensus 331 ICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~------~~~-~~fF~~~~v~~~~---~~~~~~ 400 (954)
T PRK12566 331 ICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIK------RLN-RHFFDTLTLEVGG---AQAAII 400 (954)
T ss_pred hhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCc------ccc-CCccceEEEEccC---CHHHHH
Confidence 223333333222222 2233333 4445666777888888774322 111 1233333333321 467788
Q ss_pred HHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 400 ~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
++..++|+-+.-.+.+.+.+++--.+|++|++.+++++.
T Consensus 401 ~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 401 ESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred HHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 899999998877667889999888999999999999985
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-06 Score=78.65 Aligned_cols=279 Identities=13% Similarity=0.106 Sum_probs=141.6
Q ss_pred HHHHHHHHhhhh---C-----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 119 FPVFAERLTSMF---G-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 119 ~~~l~~~l~~~~---~-----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
..+|++.|.++. | -..|+|.+|.|+.+++|+-++... ... +.....||+..|-|......+--+.. .
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~-~~~---~~~p~~VVa~aPYY~~Y~~qt~~f~s-~ 119 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPN-ASP---SSSPASVVAAAPYYSSYPEQTDFFDS-R 119 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHH-T-T---TSSSEEEEE-SS--CHHHHHCCCT-B-T
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCC-CCC---CCCCceeEecCCCccchHHHHHhccc-c
Confidence 456666666654 3 235889999999998888766431 001 12334677766655322211110000 0
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
.+++ .= |...... ++.+...-=+++.| |||.|.+-- .+++.-+..+|.|-+|-.-
T Consensus 120 ~y~w----------~G---da~~~~~--~~~~~~~IElVTSP-NNPDG~lr~---------~V~~g~~~k~I~D~AYYWP 174 (363)
T PF04864_consen 120 LYKW----------AG---DASNFKN--SDNPSPYIELVTSP-NNPDGQLRE---------AVLNGSSGKVIHDLAYYWP 174 (363)
T ss_dssp TEEE----------EE---ECCCGTT---S-CCGEEEEEESS--TTT---------------SSTTTEEEEEEE-TT-ST
T ss_pred Cccc----------cc---cHHhhcc--CCCCCCeEEEEeCC-CCCcccccc---------hhcCCCCcceeeeeeeecc
Confidence 0100 00 1111110 01112344455666 999998652 3456667788999988632
Q ss_pred cccCCccccccCCCCccee--ecccccc-CCCcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--- 343 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--- 343 (470)
-++. +.. -.+-|++ |+||.-| +|- |+||.+.+ +++.+++......+|.+.+-=++.-+...|+.+.+
T Consensus 175 hyTp----I~~-~aD~DiMLFT~SK~TGHAGS-R~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~ 248 (363)
T PF04864_consen 175 HYTP----ITA-PADHDIMLFTLSKLTGHAGS-RFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYG 248 (363)
T ss_dssp TTS-------S--B--SEEEEEHHHHCS-GGG--EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCC
T ss_pred cccc----cCC-CCCCceEEEEEecccCcccc-ccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhccc
Confidence 1221 111 1123655 8889887 787 99998864 56777776666667777777777777777776543
Q ss_pred -h----hHHHHHHH-HHHHHHHHHHHHHhhC--------CC----ce-EEEeccceeEEEEeccCCCchhHHHHHHHHHH
Q 012138 344 -E----KLAERSAH-LGEELRQHLFKIQQQF--------PN----YV-KEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 404 (470)
Q Consensus 344 -~----~~~~~~~~-~~~~l~~~L~~l~~~~--------p~----~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (470)
+ ++.+-.++ +.++. +.|+++.... ++ +. ....+.+.|.++.+...+ ..+....|++
T Consensus 249 ~~~~~~~~F~f~~~~M~~RW-~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee----d~DC~~~l~~ 323 (363)
T PF04864_consen 249 TEKGTEDIFHFGYSTMRERW-EKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE----DEDCYAVLRE 323 (363)
T ss_dssp HHTTTTSHHHHHHHHHHHHH-HHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG----GSSHHHHHHC
T ss_pred CCCCccchHHHHHHHHHHHH-HHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc----cccHHHHHHh
Confidence 1 23332222 22222 2333332211 10 11 123445777777776432 2456667777
Q ss_pred cCceeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 405 RGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 405 ~Gv~~~~~-----~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.||+...| +..++|++ +..++++.+.++++|...
T Consensus 324 ~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 324 AKIITRSGVLFGADSRYVRLS--MLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp TTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHHHHHHHCC
T ss_pred CCcccCCCCccCCCCCeEEEe--ccCCHHHHHHHHHHHHhh
Confidence 79987654 47899999 889999999999999753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-05 Score=74.82 Aligned_cols=196 Identities=17% Similarity=0.155 Sum_probs=119.6
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcce
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPV 302 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~i 302 (470)
.+-|...+-..-+|+-+|...+ +.. +.++++|-.-.-|++. ..+. .-|++.+| |.+|+- .+
T Consensus 145 ~ayv~~~~NeTi~Gv~v~~~p~------~~~--~~~~v~D~SS~ilsr~---iDvs----k~dviyagaQKnlGpa--Gl 207 (365)
T COG1932 145 DAYVHFCWNETISGVEVPELPD------IGS--DGLLVADASSAILSRP---IDVS----KYDVIYAGAQKNLGPA--GL 207 (365)
T ss_pred ccEEEEecCCcccceEccCCCC------CCC--CceEEEecccHHhcCC---CChh----HcceEEEehhhccCcc--ce
Confidence 3335554523345777752121 111 2788999654423222 1122 23677776 888852 46
Q ss_pred eEEEecHHHHhhcCcC------------CccCCCCCCHH-HHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHH
Q 012138 303 SAVLADKEVMLCIQPG------------EHGSTFGGNPL-ASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~------------~~~~t~~~~~~-~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+.++.++++.++.+.. ..+++|+.+|. +.....-+++++.. +.+.++.+++.+.|.+.+.+-.
T Consensus 208 tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~ 287 (365)
T COG1932 208 TVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD 287 (365)
T ss_pred EEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7888999999887553 34667775544 55556667888876 5577777777777777776531
Q ss_pred hhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 366 QQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 366 ~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.-.+ .+.. ..+..|.. +.+... .-...|..++.++|+....++ .+-+|.+.--.++.|+++.+++-++.+.+
T Consensus 288 fy~~-~v~~-~~RS~mnV~f~~~~~---~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 288 FYRN-LVAK-ANRSRMNVTFTLVDA---ELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred cccc-ccch-hhccceeEEEEcCcH---HHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 1111 1211 22333332 223332 245678888889988776553 34499998888999999999999988876
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.8e-05 Score=68.50 Aligned_cols=277 Identities=12% Similarity=0.160 Sum_probs=148.7
Q ss_pred ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHH
Q 012138 137 PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 216 (470)
Q Consensus 137 ~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~ 216 (470)
-+-|||.|+..+-..+..+- +++.|-+..|++..+.......+-.......| ...+...+ |++-+-.
T Consensus 104 QslsGTGAl~~~A~Fl~~~~--------~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~y--Wd~~~k~~---d~e~~Ls 170 (410)
T KOG1412|consen 104 QSLSGTGALRIAADFLATFY--------NKNTVYVSNPTWENHHAIFEKAGFTTVATYPY--WDAENKCV---DLEGFLS 170 (410)
T ss_pred eeccccchhhhhHHHHHHhc--------ccceeEecCCchhHHHHHHHHcCCceeeeeee--ecCCCcee---cHHHHHH
Confidence 44578999988888665531 34456556666522221111111000000000 00112223 6666666
Q ss_pred HHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccccC---CCCcce
Q 012138 217 IFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDWE---EVRPDM 288 (470)
Q Consensus 217 ~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~~---~~~pdi 288 (470)
.|+..+.. ..|++.. -+||||.-+ +++.+.+|.+.-++.+.+-+.|-+|.||. .|.. |+..++ |.. =+
T Consensus 171 dl~~APe~-si~iLhaCAhNPTGmDP-T~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~DawAiR~fV~~g~e-~f 246 (410)
T KOG1412|consen 171 DLESAPEG-SIIILHACAHNPTGMDP-TREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADAWAIRYFVEQGFE-LF 246 (410)
T ss_pred HHhhCCCC-cEEeeeccccCCCCCCC-CHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccHHHHHHHHhcCCe-EE
Confidence 66654332 3444544 599999877 99999999999999999999999999984 4433 333221 221 12
Q ss_pred e--ecccccc-CCCcceeE---EEecHHHHhhcCcC---CccCCCC-CCHHHHHHHHHHHHHHh--h------hhHHHHH
Q 012138 289 V--ILGKALG-GGVIPVSA---VLADKEVMLCIQPG---EHGSTFG-GNPLASAVAIASLDVIR--D------EKLAERS 350 (470)
Q Consensus 289 ~--s~sK~l~-gG~~~ig~---v~~~~~~~~~~~~~---~~~~t~~-~~~~~~aaa~a~l~~~~--~------~~~~~~~ 350 (470)
+ +|+|.+| -+- |+|. ++-++.++..+... ..-++++ ++..++......|..-+ + ..+..++
T Consensus 247 v~QSFaKNfGlYne-RvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI 325 (410)
T KOG1412|consen 247 VCQSFAKNFGLYNE-RVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRI 325 (410)
T ss_pred EEhhhhhhcccccc-cccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 2 8999888 232 5553 34455555444321 1223444 33334444444443211 1 2344455
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCCCCEEEEecCCCCCHHH
Q 012138 351 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTHDTIVRLTPPLSISSNE 429 (470)
Q Consensus 351 ~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~iR~~~~~~~t~e~ 429 (470)
++++..|++.|.+|+. |+....+..+-.|+.+. . ..... ++.|.++ .|++.+.+ |++++ ......
T Consensus 326 ~~MR~aLrd~L~aL~T--PGtWDHI~~QiGMFSyT-G-----Ltp~q-V~~li~~h~vyLl~~G----RInis-GLN~~N 391 (410)
T KOG1412|consen 326 KKMRTALRDHLVALKT--PGTWDHITQQIGMFSYT-G-----LTPAQ-VDHLIENHKVYLLSDG----RINIS-GLNMKN 391 (410)
T ss_pred HHHHHHHHHHHHhcCC--CCcHHHHHhhccceeec-C-----CCHHH-HHHHHHhceEEEecCC----cEeee-cccccc
Confidence 6666666666666543 12222222333344441 1 23433 4555555 77776543 45443 345568
Q ss_pred HHHHHHHHHHHHhcccC
Q 012138 430 LQEGSKALHDVLELDLP 446 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~~ 446 (470)
++....+|.+.++ .+.
T Consensus 392 veyVAkAIde~Vr-~~~ 407 (410)
T KOG1412|consen 392 VEYVAKAIDETVR-AIK 407 (410)
T ss_pred HHHHHHHHHHHHH-hhc
Confidence 9999999999887 653
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00011 Score=67.56 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc-cCccccccchhcccCC-----
Q 012138 119 FPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD----- 189 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~-~~yhg~~~~~~~~~~~----- 189 (470)
+..|++-.++.++.+..++ .-|||.|+..||--.++ ||| .++... ..|. .....+.+.+.
T Consensus 67 RdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LR---------pgD-ell~i~G~PYD-TLeevIG~rg~~~gSL 135 (416)
T COG4100 67 RDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILR---------PGD-ELLYITGSPYD-TLEEVIGLRGEGQGSL 135 (416)
T ss_pred hhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccC---------CCC-eEEEecCCcch-hHHHHhccCCCCcccH
Confidence 7788888999998764322 23789999999987766 677 444433 3331 11111111111
Q ss_pred cccccCC--CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc--CcEEEEec
Q 012138 190 NEAIRGF--GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADE 265 (470)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~De 265 (470)
..+...| .++.++ ..+ |.+.++..+++ +|++|.+.---+-.-.---+-.++++++++.++- ++++.+|.
T Consensus 136 ~dfgi~Y~~v~Lt~~-gki---D~~~v~~~i~~---~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDN 208 (416)
T COG4100 136 KDFGIKYKAVPLTAD-GKI---DIQAVKTAISD---RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDN 208 (416)
T ss_pred HHhCcceeecccccC-Ccc---cHHHHHHhcCc---cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEec
Confidence 0111111 111111 122 78899988886 8999887552221111111455678888888774 68999999
Q ss_pred cccCCcccCCccccccCCCCccee--eccccccCCCcce-eEEEecHHHHhhcC
Q 012138 266 IQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPV-SAVLADKEVMLCIQ 316 (470)
Q Consensus 266 v~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~i-g~v~~~~~~~~~~~ 316 (470)
+|..|... .+...+..|++ |+-|..+||+... |++.+++++.+...
T Consensus 209 CYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 209 CYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred cchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 99887544 22233445766 7889988876444 45778888887653
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00036 Score=67.32 Aligned_cols=304 Identities=15% Similarity=0.120 Sum_probs=155.7
Q ss_pred HHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchh---cccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 121 VFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 121 ~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~---~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
++-.++.+..|++ .=+|++||+-+|..++.+++--.+- .+|...=...|+..+..-|-+...+...-+-..
T Consensus 145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gt--- 221 (510)
T KOG0629|consen 145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGT--- 221 (510)
T ss_pred HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCC---
Confidence 4444555555543 4689999999999999988742111 111100112444433333555443333222100
Q ss_pred CCCCCCCCeeeecCC-----CHHHHHHHHHhcCCC--eEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEecc
Q 012138 195 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQ--IAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~--~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev 266 (470)
..+..++.+ ++++||+.|.+...+ +..++ ++.-..--|..-| |..|+++|++|++++++|.+
T Consensus 222 ------d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAA 291 (510)
T KOG0629|consen 222 ------DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAA 291 (510)
T ss_pred ------ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeecc
Confidence 112233332 689999999764322 22333 4332333477777 99999999999999999999
Q ss_pred ccC-CcccCCccccccCCCC-cceeecc--ccccCCCcceeEEEecHHH-HhhcCcCCccCC----------C-CCCH-H
Q 012138 267 QSG-LARSGRMLASDWEEVR-PDMVILG--KALGGGVIPVSAVLADKEV-MLCIQPGEHGST----------F-GGNP-L 329 (470)
Q Consensus 267 ~~g-~g~~G~~~~~~~~~~~-pdi~s~s--K~l~gG~~~ig~v~~~~~~-~~~~~~~~~~~t----------~-~~~~-~ 329 (470)
..| +- ..+..-+...|+. .|-++.. |-++.++ +.++.+.+.+- ...........- | ++.- +
T Consensus 292 wGGglL-mS~k~R~kl~Giera~SvtwnpHK~~gapl-qCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~i 369 (510)
T KOG0629|consen 292 WGGGLL-MSRKHRHKLTGIERANSVTWNPHKLMGAPL-QCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAI 369 (510)
T ss_pred cccccc-cChhhHhhccCccccCceeecHHHhhcCcc-hhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchh
Confidence 885 21 1111111222443 3444443 7788777 88887766543 222221110000 0 1111 1
Q ss_pred HHHHHHHHHH---HHhh------hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-ceeEEEEeccCC--C------
Q 012138 330 ASAVAIASLD---VIRD------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTA--L------ 391 (470)
Q Consensus 330 ~~aaa~a~l~---~~~~------~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g~~~~~~~~~~~--~------ 391 (470)
.|--=.-.++ .+.. +...+++-++++++.++|++..... .+....++ -.+..|.++..- .
T Consensus 370 QCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~--~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~ 447 (510)
T KOG0629|consen 370 QCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFE--MLFELEPEHVNVCFWYVPPSLRGWQENPER 447 (510)
T ss_pred hcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccce--ehhcCCCceEEEeeccCchHhccCcccchh
Confidence 1110000111 1111 4456677788999999988753211 11111122 122222111100 0
Q ss_pred ----chhHHHHHHHHHHcCceec---cC--CCCEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 012138 392 ----PVSAYDICLKMKERGILAK---PT--HDTIVRLTP-PLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 392 ----~~~~~~~~~~l~~~Gv~~~---~~--~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l 441 (470)
..-+-.+-.+|.++|-... |. .++++|+.. +...+.++++.+++.|...=
T Consensus 448 ~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 448 DSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred hhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 0112245567888886643 32 267888643 23678999999999887653
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0004 Score=67.67 Aligned_cols=311 Identities=16% Similarity=0.124 Sum_probs=154.4
Q ss_pred HHHHHHhhhhCCCe-----------EEecCChhHHHHHHHHHHHHhchhccc-CCC-------CCcEEEEEccCcccccc
Q 012138 121 VFAERLTSMFGYDM-----------VLPMNTGAEGVETALKLARKWGYVKKK-FSI-------DEAIIVSCCGCFHGRTL 181 (470)
Q Consensus 121 ~l~~~l~~~~~~~~-----------v~~~~sGteA~~~al~~~~~~~~~~~~-~~~-------g~~~ii~~~~~yhg~~~ 181 (470)
-..+||.++++... =++..|++|++..++.+++.-...+-+ .+| ..+-|+.++..-|.+.-
T Consensus 117 ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssve 196 (511)
T KOG0628|consen 117 IVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVE 196 (511)
T ss_pred HHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHH
Confidence 34467777664321 234456789999999888752111111 010 11233334444455544
Q ss_pred chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC--CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 182 AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~--~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
.+..+.+-. . ...+... ...+ ..+.|+++|++.. +-+..+++-. .+.||.. .-+.+.+|..+|+++|+
T Consensus 197 ka~~i~~Vk-l--R~l~td~-n~~m---r~~~L~~AIe~D~arGlIPf~v~at-~GTT~~c--a~D~l~elg~Vc~~~gl 266 (511)
T KOG0628|consen 197 KACLIAGVK-L--RALPTDE-NFGM---RGDTLRKAIEEDIARGLIPFFVCAT-LGTTSSC--AFDELEELGPVCREEGL 266 (511)
T ss_pred HhHhhccee-E--EEeeccc-CcCC---CHHHHHHHHHHHHhCCCccEEEEEe-ecCcccc--ccccHHHhcchhhhcCE
Confidence 333333211 0 0001000 1122 5788999997632 3355666655 5666655 55679999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCC-ccee--ecccccc-----------CCCcceeEEE-ecHHHHhhcCcCCccCCC
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVR-PDMV--ILGKALG-----------GGVIPVSAVL-ADKEVMLCIQPGEHGSTF 324 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~-pdi~--s~sK~l~-----------gG~~~ig~v~-~~~~~~~~~~~~~~~~t~ 324 (470)
+|.+|.+|+|-...-+.+..-.-|+. .|-. ..+|.+- .|. .+.-.. +++...+.-.... ...|
T Consensus 267 WLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~-~~~~~~~vdp~yL~h~~~~~-~~Dy 344 (511)
T KOG0628|consen 267 WLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGT-KLSRAFNVDPLYLKHAYQGS-APDY 344 (511)
T ss_pred EEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCc-eeeeeeecChHhhcchhhcc-CCCc
Confidence 99999999962111000000000111 1111 1233322 343 333222 2332222111110 1111
Q ss_pred --CCCHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEEeccceeEEEEeccCCCchhHHH
Q 012138 325 --GGNPLA----SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRGRGLFNAVEFDKTALPVSAYD 397 (470)
Q Consensus 325 --~~~~~~----~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 397 (470)
-.-|++ ..-.+-.++.+.-+++++++++..+ |.+....+...-|.+ +...+-.|+ +.+.+..++ ....+
T Consensus 345 rhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~-La~~fe~lv~~d~~FE~~~~~~lgL-vcFRlk~~N--~~ne~ 420 (511)
T KOG0628|consen 345 RHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVR-LAKEFETLVRADPRFEIVNKRILGL-VCFRLKGDN--EINEA 420 (511)
T ss_pred cccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhhcCCcceeecccccce-eEEeecCCc--HHHHH
Confidence 111221 1222334454555667666665433 334444443332211 112223343 444454433 36677
Q ss_pred HHHHHHHc-CceeccC---CCCEEEEecCC-CCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 398 ICLKMKER-GILAKPT---HDTIVRLTPPL-SISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 398 ~~~~l~~~-Gv~~~~~---~~~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
+.+++-.. .|.+.|. +.-.+|+++.. ..+++++++..+.|.+... ++.+.
T Consensus 421 Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~-~l~~~ 475 (511)
T KOG0628|consen 421 LLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAAD-ELFEA 475 (511)
T ss_pred HHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHH-HHHhh
Confidence 88888777 5666654 35578998643 4678899999999999888 65443
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00049 Score=64.65 Aligned_cols=270 Identities=15% Similarity=0.138 Sum_probs=136.9
Q ss_pred CeEEe--cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-
Q 012138 133 DMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG- 209 (470)
Q Consensus 133 ~~v~~--~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 209 (470)
+++++ +-|||-|+..+-..+.++. ++ ..|.+.+|++ |.........+-+ +..++|-
T Consensus 119 ~Ri~tvQ~lSGTGaLriga~Fl~~f~-------~~-~~I~ip~PTW-gNh~~if~~ag~~------------~~~yrYyd 177 (427)
T KOG1411|consen 119 KRIVTVQTLSGTGALRVGAEFLARFY-------PS-RDIYIPDPTW-GNHKNIFKDAGLP------------VKFYRYYD 177 (427)
T ss_pred cceeEEEeccCcchhhHHHHHHHhhc-------cc-cceeecCCcc-cccCccccccCcc------------eeeeeecc
Confidence 35544 3578888877777555542 33 3777788885 2211111111110 1223322
Q ss_pred ------CHHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc----c
Q 012138 210 ------DITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML----A 278 (470)
Q Consensus 210 ------d~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~----~ 278 (470)
|.+-+-+-+.+.++. ..|++.. -+||||+-. +.+.+++|.++-++.+.+-++|-+|.||. .|... +
T Consensus 178 ~~t~gld~~g~ledl~~~p~g-s~ilLhaCaHNPTGvDP-t~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG~~d~DA~a 254 (427)
T KOG1411|consen 178 PKTRGLDFKGMLEDLGEAPEG-SIILLHACAHNPTGVDP-TKEQWEKISDLIKEKNLLPFFDMAYQGFA-SGDLDKDAQA 254 (427)
T ss_pred ccccccchHHHHHHHhcCCCC-cEEEeehhhcCCCCCCc-cHHHHHHHHHHhhhccccchhhhhhcccc-cCCchhhHHH
Confidence 444333333333222 3455555 799999877 99999999999999999999999999983 44432 1
Q ss_pred cc---cCCCCcce-eecccccc-CCCcceeE---EEecHHHHhhcCcC---CccCCCCCCHH-HHHHHHHHHHH--H---
Q 012138 279 SD---WEEVRPDM-VILGKALG-GGVIPVSA---VLADKEVMLCIQPG---EHGSTFGGNPL-ASAVAIASLDV--I--- 341 (470)
Q Consensus 279 ~~---~~~~~pdi-~s~sK~l~-gG~~~ig~---v~~~~~~~~~~~~~---~~~~t~~~~~~-~~aaa~a~l~~--~--- 341 (470)
.. ..|...-+ -+|+|.+| =|- |+|+ ++-+.+...+.... .....|+.+|+ ++..+...|.. +
T Consensus 255 vR~F~~~g~~~~laQSyAKNMGLYgE-RvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~ 333 (427)
T KOG1411|consen 255 VRLFVEDGHEILLAQSYAKNMGLYGE-RVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQ 333 (427)
T ss_pred HHHHHHcCCceEeehhhhhhcchhhh-ccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHH
Confidence 11 11221111 28899988 222 5555 34444444433211 11223343333 22222222221 1
Q ss_pred --hh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCE
Q 012138 342 --RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTI 416 (470)
Q Consensus 342 --~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~ 416 (470)
.+ +.+.+++..++..|.+.|+...... ....+ ...|. +.+. . .+.+. ++.|.+ ..|+.... +
T Consensus 334 W~~evk~MadRi~~mR~~L~d~L~~~gs~~--~W~hI~~QIGM-F~fT-g-----l~peQ-v~~l~ke~~iYmT~d--G- 400 (427)
T KOG1411|consen 334 WLGEVKGMADRIISMRQQLFDALEKEGSPG--NWSHITKQIGM-FCFT-G-----LNPEQ-VDWLTKEYHIYLTKD--G- 400 (427)
T ss_pred HHHHHHHHHHhhhhhHHHHhHHhhcCCCCc--cHHHHHHhhhe-eeec-C-----CCHHH-HHHHHhhheeeeccC--c-
Confidence 11 2344455555555555554432211 01111 22343 3331 1 23343 445544 47776532 2
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 417 VRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 417 iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|++.+- .+...+..+.++|.++.+
T Consensus 401 -RiS~aG-~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 401 -RISMAG-LSSSNVPYLADAIHAVTK 424 (427)
T ss_pred -eEeecc-ccccCCcccchhhHhHhc
Confidence 666543 455678888888877655
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.14 Score=52.61 Aligned_cols=263 Identities=17% Similarity=0.275 Sum_probs=138.3
Q ss_pred HhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCe
Q 012138 126 LTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH 203 (470)
Q Consensus 126 l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (470)
++++.|.+ ..-+..-||.|-|+.....+. ..++++++...+ |-.+...+.....+ + +
T Consensus 172 i~dlTGL~~aNASLLDEgTAaaEAm~l~~~~---------~krkk~vvd~~~-hpqtlsV~~TRa~~-~----~------ 230 (1001)
T KOG2040|consen 172 ITDLTGLPMANASLLDEGTAAAEAMALCNRI---------NKRKKFVVDSNC-HPQTLSVVKTRAKG-F----G------ 230 (1001)
T ss_pred hhhccCCcccchhhhccchhHHHHHHHHHhh---------cccceEEecCCC-Ccchhhhhhccccc-c----c------
Confidence 44555643 455556677777665544443 123355555544 77666655433221 1 1
Q ss_pred eeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC---CcccCCccccc
Q 012138 204 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG---LARSGRMLASD 280 (470)
Q Consensus 204 ~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g---~g~~G~~~~~~ 280 (470)
..+...|+++... ...++..+++.. .+..|.+.+ +.++++.+++.|.++++---.-. +-..|
T Consensus 231 i~v~~~~~~~~~~----s~~~v~gvlvQY-P~t~G~i~d----~~el~~~a~~~~s~vv~atDLLaLtiLrpPg------ 295 (1001)
T KOG2040|consen 231 IKVVVSDIKEADY----SSKDVSGVLVQY-PDTEGSVLD----FDELVELAHANGSLVVMATDLLALTILRPPG------ 295 (1001)
T ss_pred eeEEecCHHHhhc----cccceeEEEEEc-CCCCCcccC----HHHHHHHhhccCceEEEeehhhHHHccCChh------
Confidence 1121114433221 123688888877 556788887 99999999999988765311100 11112
Q ss_pred cCCCCcceee-----cccccc-CCCcceeEEEecHHHHhhcCcCCc-cCC------------------------CCCCHH
Q 012138 281 WEEVRPDMVI-----LGKALG-GGVIPVSAVLADKEVMLCIQPGEH-GST------------------------FGGNPL 329 (470)
Q Consensus 281 ~~~~~pdi~s-----~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~-~~t------------------------~~~~~~ 329 (470)
.+|. ||.+ |+-.+| ||. ..|++.+++++...+ ++.. +-+ -+.|.-
T Consensus 296 efGa--DIavGSsQRFGVPlGYGGP-HAaFfAv~~~l~R~m-PGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNIC 371 (1001)
T KOG2040|consen 296 EFGA--DIAVGSSQRFGVPLGYGGP-HAAFFAVSESLVRMM-PGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNIC 371 (1001)
T ss_pred hcCc--eeeeccccccCccccCCCc-hHHHHHHHHHHHhhC-CCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhh
Confidence 2222 4331 333344 454 445555565555443 2210 000 011222
Q ss_pred HHHHHHHHHHHHh----h----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHH
Q 012138 330 ASAVAIASLDVIR----D----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 401 (470)
Q Consensus 330 ~~aaa~a~l~~~~----~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 401 (470)
.+.|.+|-+..+. - +++.+++......|..+|+..+.+. + ....|=.+.+... .+..++.++
T Consensus 372 TAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel---~----~k~fFDTLkI~~~---~s~~~~l~r 441 (1001)
T KOG2040|consen 372 TAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHEL---Q----HKPFFDTLKIRCG---CSAEEVLDR 441 (1001)
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhh---c----cccccceEEEEec---CcHHHHHHH
Confidence 2222222222221 1 3455555666666777776544321 1 1112222222222 267888888
Q ss_pred HHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 402 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 402 l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
..++++-..-..++.+-++.--..+++|++.++..+.
T Consensus 442 A~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 442 AAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred HHhhcCceEEeecCceEEeecccccHHHHHHHHHHHc
Confidence 8888887776677888888778899999999999886
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=50.34 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=44.7
Q ss_pred CCCCcHHHHHHHHhhhhC------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccc
Q 012138 114 FYNDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG 178 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg 178 (470)
...++++++++++.+.++ .++|++|+|+++|++.+++.+.. +|+ .|++..|.|+|
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d---------pGD-~VlVp~P~Y~~ 153 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD---------PGD-AFLVPTPYYAA 153 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC---------CCC-EEEEeCCCCCC
Confidence 456778899999988755 35799999999999999998865 555 88889999864
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.025 Score=51.43 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhcCCC-eEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 210 DITALEKIFKESGDQ-IAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 210 d~~~Le~~l~~~~~~-~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
|++.+++++++.+++ +-+|.... ...| -+++-+++|..+|..|+++-|+..+|+
T Consensus 142 dleav~~~iee~g~dcilci~sttscfap-----r~pd~leaiaaica~~diphivnnayg 197 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHSTTSCFAP-----RSPDNLEAIAAICAAHDIPHIVNNAYG 197 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeecccccCC-----CCCchHHHHHHHHHccCchhhhccccc
Confidence 789999999987654 22222111 1222 257789999999999999999999885
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 470 | ||||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 1e-121 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 1e-121 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 1e-120 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 1e-118 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 1e-114 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 1e-113 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 1e-109 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-59 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 3e-58 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 1e-57 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-57 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 1e-53 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 3e-53 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 2e-50 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 1e-48 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 1e-46 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 3e-46 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 4e-46 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 1e-45 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 1e-45 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 2e-43 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 4e-42 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 5e-41 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 5e-41 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 9e-41 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 9e-41 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 1e-39 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 1e-39 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 2e-36 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 6e-36 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 3e-35 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 6e-34 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 9e-34 | ||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 3e-33 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 5e-33 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 5e-33 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 5e-33 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 8e-33 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 8e-33 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 1e-32 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 2e-32 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 8e-32 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 1e-31 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 3e-31 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 4e-31 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 1e-30 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 2e-30 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 3e-30 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 3e-30 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 4e-30 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 4e-30 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 7e-30 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 7e-30 | ||
| 2epj_A | 434 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 8e-30 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 9e-30 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 9e-30 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 1e-29 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 2e-29 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 4e-29 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 5e-29 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 1e-28 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 2e-27 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 2e-27 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 6e-27 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 1e-26 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 2e-26 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 7e-26 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 1e-24 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 2e-24 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 3e-24 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 3e-23 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 4e-22 | ||
| 2yku_A | 465 | Structural Determinants Of The Beta-Selectivity Of | 3e-20 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 5e-19 | ||
| 2cy8_A | 453 | Crystal Structure Of D-Phenylglycine Aminotransfera | 3e-17 | ||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 3e-07 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 6e-06 |
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
| >pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
| >pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453 | Back alignment and structure |
|
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 675 bits (1743), Expect = 0.0
Identities = 217/443 (48%), Positives = 286/443 (64%), Gaps = 7/443 (1%)
Query: 1 MNSMGATRRNLHCLLSRVCRK-RSYGAQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPI 59
M S A + L V S + T +S + EY+Y AHNYHP+P+
Sbjct: 1 MFSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYGAHNYHPLPV 60
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119
+ KG +WD EG KY DFLS+YSAVNQGHCHPKI+ AL+ Q +KLTL+SRAFYN+
Sbjct: 61 ALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVL 120
Query: 120 PVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 179
+ E +T +F Y VLPMNTG E ETA KLARKWGY K +A IV G F GR
Sbjct: 121 GEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGR 180
Query: 180 TLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239
TL+AIS S D + GFGP +PG + + D+ ALE+ +A F+ EPIQGEAGV
Sbjct: 181 TLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERAL--QDPNVAAFMVEPIQGEAGV 238
Query: 240 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 299
++P GYL VR+LC+++ +L IADEIQ+GLAR+GR LA D+E VRPD+V+LGKAL GG+
Sbjct: 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGL 298
Query: 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359
PVSAVL D ++ML I+PGEHGST+GGNPL VAIA+L+V+ +E LAE + LG LR
Sbjct: 299 YPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRN 358
Query: 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRL 419
L K+ + V VRG+GL NA+ + A+ +CL++++ G+LAKPTH I+R
Sbjct: 359 ELMKLPS---DVVTAVRGKGLLNAIVIKE-TKDWDAWKVCLRLRDNGLLAKPTHGDIIRF 414
Query: 420 TPPLSISSNELQEGSKALHDVLE 442
PPL I +EL+E + ++ +
Sbjct: 415 APPLVIKEDELRESIEIINKTIL 437
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 673 bits (1738), Expect = 0.0
Identities = 194/423 (45%), Positives = 271/423 (64%), Gaps = 7/423 (1%)
Query: 22 RSYGAQPQGGTSP--SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLD 79
S G P+G + + IN E +Y AHNY P+P+V +AKG ++D +Y D
Sbjct: 10 HSSGLVPRGSMEFVKDLKTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYD 69
Query: 80 FLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMN 139
FLSAYS+VNQGHCHP I+ A+ QA+ LT+ SRAF++ + LT++ GYD VL MN
Sbjct: 70 FLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMN 129
Query: 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL 199
TGAE ETA KL RKWGY KK + A IV C F GRTL IS S + FGP
Sbjct: 130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPF 189
Query: 200 LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259
P KV + D+ ALE+ K + F+ EPIQGEAGVI+P D YL+ V D+C KYN+
Sbjct: 190 APQFSKVPYDDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNV 247
Query: 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE 319
L +ADE+Q+GL R+G++L V+PD+++LGKAL GG P+SAVLA+ ++ML I+PGE
Sbjct: 248 LFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE 307
Query: 320 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379
HGST+GGNPLA+++ + +L+V+ +EKL E + LG ++L + + V++VRG+G
Sbjct: 308 HGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSK-IVRDVRGKG 366
Query: 380 LFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439
L A+EF V+ DICLK+KE G++ + HD +RLTPPL I+ +L E ++ +
Sbjct: 367 LLCAIEFKNEL--VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVK 424
Query: 440 VLE 442
++
Sbjct: 425 TVK 427
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 664 bits (1716), Expect = 0.0
Identities = 199/402 (49%), Positives = 276/402 (68%), Gaps = 11/402 (2%)
Query: 40 QQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
+ +I L Y A+NYHP+PIV S+A+G + DPEGN+Y+D LSAYSAVNQGH HPKI+ A
Sbjct: 1 KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINA 60
Query: 100 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 159
L +QA ++TL+SRAF++D+ + E++ + +MVLPMNTGAE VETA+K AR+W Y
Sbjct: 61 LIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDV 120
Query: 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219
KK + A I+ C FHGRT+ A+SMS + E RGFGP+LPG + + +GD+ AL+
Sbjct: 121 KKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI- 179
Query: 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS 279
A F+ EPIQGEAG+ IPP G+LK ++C K N+L +ADEIQ+GL R+G++ A
Sbjct: 180 --TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC 237
Query: 280 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339
DW+ V PDM ILGKALGGGV P+S A+++++ +PG HGSTFGGNPLA AV+IA+L+
Sbjct: 238 DWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALE 297
Query: 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 399
V+ +EKL ERS LGE+L L +I + EVRG+GLF +E ++ A C
Sbjct: 298 VLEEEKLTERSLQLGEKLVGQLKEID---NPMITEVRGKGLFIGIELNE-----PARPYC 349
Query: 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
++K G+L K TH+ ++R+ PPL IS +L+ + + VL
Sbjct: 350 EQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 471 bits (1214), Expect = e-165
Identities = 129/413 (31%), Positives = 211/413 (51%), Gaps = 23/413 (5%)
Query: 32 TSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH 91
+ + + L+ E + Y+ ++ + +G+ +WD EGN+Y+D + Y N GH
Sbjct: 2 ETRTLEDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGH 61
Query: 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETAL 149
+P++++A++ QAE L + F LT++ ++ V P+N+G E E AL
Sbjct: 62 GNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAAL 121
Query: 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDF 208
K AR KK V+ F GRT+ ++S++ R F PL+ + +
Sbjct: 122 KFARAHTGRKK--------FVAAMRGFSGRTMGSLSVT-WEPKYREPFLPLVEPVEFIPY 172
Query: 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268
D+ AL++ ++ A + EP+QGE GV +L+A R++ + L+I DEIQ+
Sbjct: 173 NDVEALKRAV---DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT 229
Query: 269 GLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 328
G+ R+G+ A + + PD++ L KALGGGV P+ + +EV + G HG+TFGGNP
Sbjct: 230 GMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNP 288
Query: 329 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388
LA A +A++ + +L ER+A LG + L I ++EVRG GL +E +
Sbjct: 289 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSP---KIREVRGMGLMVGLELKE 345
Query: 389 TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
A A I KE +LA T++R PPL I +L+ +A+ VL
Sbjct: 346 KA----APYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 431 bits (1110), Expect = e-149
Identities = 122/443 (27%), Positives = 204/443 (46%), Gaps = 42/443 (9%)
Query: 32 TSPSSSSSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG 90
T+ SQ LI+ + A +P+ +A G + D +GN+ +D S + G
Sbjct: 17 TAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVG 76
Query: 91 HCHPKIMKALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVE 146
+ PK+++A++ Q T + + + E+L + G N+G+E VE
Sbjct: 77 NSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVE 136
Query: 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLK 205
A+K+AR + K +V+ +HGRT ++++ + GFGP P +
Sbjct: 137 NAVKIARS--HTHKPA------VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYR 188
Query: 206 VDFGD------------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDG 245
+ + D +A + EPIQGE G I+P DG
Sbjct: 189 APLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADG 248
Query: 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 305
+L + D C K +++ IADE+Q+G AR+G M A + E + PD+++ K + GG+ P+SAV
Sbjct: 249 FLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGL-PLSAV 307
Query: 306 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 365
E+M G T+GGNP+A A A+A+++ I E L R+ + + ++ L ++Q
Sbjct: 308 TGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQ 367
Query: 366 QQFPNYVKEVRGRGLFNAVEF----DKTALPVSAYDICLKMKERGILAKP--THDTIVRL 419
+ + +VRGRG A+E +C G++ T+ +VR
Sbjct: 368 AEDD-RIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRF 426
Query: 420 TPPLSISSNELQEGSKALHDVLE 442
PPLSI + L EG L +VL
Sbjct: 427 LPPLSIGDDLLNEGLDVLEEVLR 449
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 415 bits (1068), Expect = e-143
Identities = 135/425 (31%), Positives = 204/425 (48%), Gaps = 13/425 (3%)
Query: 21 KRSYGAQPQGGTSP-SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLD 79
+ S+ G S ++ + E Y P + + KGS +WD +G +Y+D
Sbjct: 2 RGSHHHHHHGMASHMATEQTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYID 61
Query: 80 FLSAYSAVNQ-GHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPM 138
F AV GHCHP +++AL+ Q E L +S F N+ +L + VL M
Sbjct: 62 FAGGI-AVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFM 120
Query: 139 NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFG 197
N+G E ETA KLAR + + S + I++ FHGR+L +S+ GFG
Sbjct: 121 NSGTEANETAFKLARHYAC--VRHSPFKTKIIAFHNAFHGRSLFTVSVG-GQPKYSDGFG 177
Query: 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 257
P + V F D+ A++ + D + EPIQGE GV +LK +RDLC ++
Sbjct: 178 PKPADIIHVPFNDLHAVKAVM---DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH 234
Query: 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 317
L++ DE+Q G+ R+G + A V PD++ KALGGG PVSA+L +E+
Sbjct: 235 QALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHV 293
Query: 318 GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377
G HGST+GGNPLA AVA A+ D+I ++ + ++ QHL I +QF ++RG
Sbjct: 294 GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFD-IFSDIRG 352
Query: 378 RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437
GL E A D E G++ ++R P L + ++ EG +
Sbjct: 353 MGLLIGAELKP-KYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRF 411
Query: 438 HDVLE 442
+
Sbjct: 412 AQAVG 416
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 411 bits (1060), Expect = e-142
Identities = 136/408 (33%), Positives = 214/408 (52%), Gaps = 16/408 (3%)
Query: 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPK 95
S + + + Y + Y P F KGS I+D +GN YLDF S AVN GH HP+
Sbjct: 2 GSDKIHHHHHHMYLMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGI-AVNVLGHSHPR 60
Query: 96 IMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKW 155
+++A+++QAEKL S F+N AE L+ V NTG E E A+K+ARK+
Sbjct: 61 LVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKY 120
Query: 156 GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITAL 214
G K S + I+S FHGRTL +++ + + F PL+PG +F ++ L
Sbjct: 121 GKKK---SEKKYRILSAHNSFHGRTLGSLTAT-GQPKYQKPFEPLVPGFEYFEFNNVEDL 176
Query: 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274
+ + + EPIQGE+G++ +L+ R LC +Y+ L++ DE+Q G+ R+G
Sbjct: 177 RRKM---SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG 233
Query: 275 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 334
++ A V PD++ K LGGGV P+ AV+ E ++PG+HG+TFGGNPLA
Sbjct: 234 KLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIV-NERANVLEPGDHGTTFGGNPLACRAG 291
Query: 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 394
+ + + E E G L + L ++++++ V +VRG GL ++F + VS
Sbjct: 292 VTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-VVADVRGMGLMIGIQFRE---EVS 347
Query: 395 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
++ K E +L P + +R PPL++ E+ + L VL+
Sbjct: 348 NREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-141
Identities = 123/405 (30%), Positives = 205/405 (50%), Gaps = 16/405 (3%)
Query: 41 QLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKA 99
++ E + Y IV + +G ++D + KYLDF S V G+ H K
Sbjct: 2 KMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGI-GVCALGYNHAKFNAK 60
Query: 100 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 159
++ Q +KL +S +YN+ A+ L + V N+G E +E A+K ARK+ + K
Sbjct: 61 IKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNK 120
Query: 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEKIF 218
+ ++ FHGRTL A+S++ NE + F PL+ G + DI+++EK+
Sbjct: 121 ---GVKGGQFIAFKHSFHGRTLGALSLT-ANEKYQKPFKPLISGVKFAKYNDISSVEKLV 176
Query: 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
++ + E +QGE G+ + KA+R LC + +IL+IADEIQ G+ RSG+ A
Sbjct: 177 ---NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFA 233
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-MLCIQPGEHGSTFGGNPLASAVAIAS 337
+ ++ PD++ KALG G+ V A + +++V ++ G+HGST+GGNPL A A
Sbjct: 234 YEHAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAV 292
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397
++ ++EK+ E L L Q L ++ +F + K+ +G G + DK V
Sbjct: 293 FEIFKEEKILENVNKLTPYLEQSLDELINEFD-FCKKRKGLGFMQGLSLDK---SVKVAK 348
Query: 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ K +E +L + +R PPL + + E S+ L L+
Sbjct: 349 VIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALK 393
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 410 bits (1055), Expect = e-141
Identities = 112/435 (25%), Positives = 207/435 (47%), Gaps = 39/435 (8%)
Query: 37 SSSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPK 95
+S+++L+ + PI +A+ +WD EG +YLDF + +N GH HPK
Sbjct: 2 NSNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPK 61
Query: 96 IMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKL 151
++ A++ Q +KL+ + + + E + L + TG+E VE A+K+
Sbjct: 62 VVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI 121
Query: 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD 210
AR K+ ++ G +HGRT ++++ G G + + +
Sbjct: 122 ARA--ATKRSG------TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 211 ----------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258
I ++ +IFK + + IA + EP+QGE G +++ +R LC ++
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 318
I++IADE+QSG R+G + A + V PD+ K++ GG P++ V EVM + PG
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPG 292
Query: 319 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378
G T+ GNP+A A+ L V E L +++ LG++L+ L I ++ P + +VRG
Sbjct: 293 GLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGL 351
Query: 379 GLFNAVEF-----DKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPLSISSNELQ 431
G A+E +I + +++G++ + ++R+ PL+I +++
Sbjct: 352 GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIR 411
Query: 432 EG----SKALHDVLE 442
+G S+ + +
Sbjct: 412 QGLEIISQCFDEAKQ 426
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 400 bits (1029), Expect = e-136
Identities = 118/438 (26%), Positives = 190/438 (43%), Gaps = 37/438 (8%)
Query: 32 TSPSSSSSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG 90
T S L + P+ A G I D +GN ++D + + G
Sbjct: 20 TPLPGPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVG 79
Query: 91 HCHPKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVE 146
HP + A+ +QA T +++ AE L ++ N+GAE VE
Sbjct: 80 ASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVE 139
Query: 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLK 205
A+K+AR + +V+ +HGRT ++++ + + FGP P +
Sbjct: 140 NAIKVARL--ATGRPA------VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYR 191
Query: 206 VDFGD-------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAV 250
+ + +A + EPIQGE G I+P G+L +
Sbjct: 192 MPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATL 251
Query: 251 RDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKE 310
S+ ++ IADE+Q+G AR+G AS+ E + PD+V + K + GG +P+SAV E
Sbjct: 252 TAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAE 310
Query: 311 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPN 370
+M + G G T+GGNP+ A A+A+L V+R+ L R+ + + L + ++
Sbjct: 311 LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVD- 369
Query: 371 YVKEVRGRGLFNAVEF----DKTALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLS 424
+ EVRGRG A+E I + +G IL T ++RL PPL
Sbjct: 370 IIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLV 429
Query: 425 ISSNELQEGSKALHDVLE 442
I + L EG AL D++
Sbjct: 430 IGDDLLDEGITALSDIIR 447
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-136
Identities = 120/440 (27%), Positives = 193/440 (43%), Gaps = 43/440 (9%)
Query: 35 SSSSSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCH 93
S + + P++ +AKGS ++D +G LDF S + GHCH
Sbjct: 2 SLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCH 61
Query: 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKL 151
P+I+ + E A KL + A RL ++ G D L ++TGAE E A+++
Sbjct: 62 PEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRM 121
Query: 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD- 210
A+ K IV +HG T AA S + +G GP G +
Sbjct: 122 AKL--VTGKYE------IVGFAQSWHGMTGAAASATYSAGR-KGVGPAAVGSFAIPAPFT 172
Query: 211 -------------ITALEKIFK----ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253
+ L+ F +S +A F+ EPI G+I PDGY+ A++
Sbjct: 173 YRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRK 232
Query: 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 313
C +L+I DE Q+G+ R+G M A + V PD++ L K LG G +P++A++ +
Sbjct: 233 CEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEE 291
Query: 314 CIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 371
+T +PL +AV + LDV++ + L R+ +G+ LR+ L + ++F
Sbjct: 292 RAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-C 350
Query: 372 VKEVRGRGLFNAVEF-----DKTALPVSAYDICLKMKERGILAK----PTHDTIVRLTPP 422
+ +VRGRGL VE K I + G+ P + R+ PP
Sbjct: 351 IGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPP 410
Query: 423 LSISSNELQEGSKALHDVLE 442
L++S +E+ G L +E
Sbjct: 411 LTVSEDEIDLGLSLLGQAIE 430
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-136
Identities = 134/396 (33%), Positives = 206/396 (52%), Gaps = 25/396 (6%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKL 107
Y +NY +P+ F + KG ++D EG +YLDF+S VN GH +PK+ +AL+EQ EKL
Sbjct: 2 YLMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGI-GVNSLGHAYPKLTEALKEQVEKL 60
Query: 108 TLSSRAFYNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166
S + N A +L F + V N+G E VE A+KLARK+ K ++
Sbjct: 61 LHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDK---GKNK 117
Query: 167 AIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEKIFKESGDQI 225
+S FHGRT ++S + GF PL+PG DI ++ K+ ++
Sbjct: 118 WKFISFENSFHGRTYGSLSAT-GQPKFHKGFEPLVPGFSYAKLNDIDSVYKLL---DEET 173
Query: 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 285
AG + E IQGE GV + +L ++++C + ++L+I DE+Q+G+ R+G A ++
Sbjct: 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLK 233
Query: 286 PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
PD++ L K LGGGV P+ A+LA +EV PG HGSTFGGNPLA +D + EK
Sbjct: 234 PDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EK 290
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405
L +G ++ L ++ + +V+GRGL +E ++ K E+
Sbjct: 291 LLPHVREVGNYFKEKLKELGK------GKVKGRGLMLGLELERECKDYVL-----KALEK 339
Query: 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
G+L T ++R PPL I + L ++L
Sbjct: 340 GLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 396 bits (1020), Expect = e-135
Identities = 97/445 (21%), Positives = 169/445 (37%), Gaps = 34/445 (7%)
Query: 28 PQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDP-EGNKYLDFLSAYSA 86
+ ++ ++ + + + + +++ GS + D G +YLD + ++
Sbjct: 6 KSVALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVAS 65
Query: 87 VNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPV-----FAERLTSMF---GYDMVLPM 138
G P ++ + AE + + N F E + + +
Sbjct: 66 SALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFV 125
Query: 139 NTGAEGVETALKLARKWGYVK----KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI- 193
GA VE ALK A W ++ G FHGR+ +S++ +
Sbjct: 126 EGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN-TKPTI 184
Query: 194 -RGFGPLLPGHLKVDFG---------------DITALEKIFKESGDQIAGFLFEPIQGEA 237
F + + + F+ IA F+ EPIQGE
Sbjct: 185 TARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEG 244
Query: 238 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG 297
G + A+R+LC +++ L+I DE+Q+G +G A +V PD+V GK
Sbjct: 245 GDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQV 304
Query: 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 357
+ + + + P ST+GGN A L+VI E L ER+ G+ L
Sbjct: 305 CGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364
Query: 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 417
R L ++ FP V + RGRGL A ++ ++ +R ++ P V
Sbjct: 365 RARLDELAADFPAVVLDPRGRGLMCAFSLPT---TADRDELIRQLWQRAVIVLPAGADTV 421
Query: 418 RLTPPLSISSNELQEGSKALHDVLE 442
R PPL++S+ E+ A+ L
Sbjct: 422 RFRPPLTVSTAEIDAAIAAVRSALP 446
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 392 bits (1010), Expect = e-134
Identities = 132/438 (30%), Positives = 215/438 (49%), Gaps = 56/438 (12%)
Query: 38 SSQQLINLEYEYSAHNYHPV---PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCH 93
S+++I Y A + P+V +G I+D +GNKYLDF S N G H
Sbjct: 2 LSRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSH 61
Query: 94 PKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETAL 149
P+++K EQ +KL ++ FYN A++L + + V N+G E +E ++
Sbjct: 62 PEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121
Query: 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDF 208
K+ + G +K I++ G FHGRT +IS++ R GP +PG + V +
Sbjct: 122 KVVKNTG--RKY-------IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPY 172
Query: 209 GD---------------------ITALEK-IFKE--SGDQIAGFLFEPIQGEAGVIIPPD 244
+ I +E IF +++AG FEPIQGE G +IPP
Sbjct: 173 PNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPK 232
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
+ ++ L KY IL++ DE+Q GL R+G++ A + PD++ L KALGGG++P+ A
Sbjct: 233 NFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGA 292
Query: 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364
+ K++ +PG H +TFGGN LA A+ +D++ + L +G+ + L +
Sbjct: 293 TIFRKDLDF--KPGMHSNTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGL 348
Query: 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLS 424
+VRG GL +E+++ I + +RG+L P + +R+ PPL
Sbjct: 349 -------ADDVRGIGLAWGLEYNE---KKVRDRIIGESFKRGLLLLPAGRSAIRVIPPLV 398
Query: 425 ISSNELQEGSKALHDVLE 442
IS E ++G L V++
Sbjct: 399 ISEEEAKQGLDILKKVIK 416
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 389 bits (1003), Expect = e-133
Identities = 104/435 (23%), Positives = 197/435 (45%), Gaps = 41/435 (9%)
Query: 36 SSSSQQLINLEYEYSAHNYHP--VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCH 93
S ++ L + + + P+ S +G+ + + G + +D A+ A + G+ H
Sbjct: 2 SHMTKALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGH 61
Query: 94 PKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETAL 149
P I+ A+ A + + N AERL + F G + ++G++ E A
Sbjct: 62 PAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAY 121
Query: 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209
+ K + +++ G +HG T+ +++ S + ++ G + + +
Sbjct: 122 RAIVK--ATGRSG------VIAFAGAYHGCTVGSMAFSGHS--VQADAAKADGLILLPYP 171
Query: 210 D--------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254
D +T L + I EPIQ + G+I+PPDG+L+ D+C
Sbjct: 172 DPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADIC 231
Query: 255 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC 314
+ IL++ DE++ GLARSGR+ + E PD+++LGK LGGG +P+SAV+A E++ C
Sbjct: 232 RAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDC 290
Query: 315 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374
T GNP+++A +A L+ I + L + G LR L ++ ++ P + +
Sbjct: 291 -ASAFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGD 348
Query: 375 VRGRGLFNAVEF-----DKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPLSISS 427
+RGRGL +E + + + + G++ + ++ TPPL+I+
Sbjct: 349 IRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITE 408
Query: 428 NELQEGSKALHDVLE 442
++ + L
Sbjct: 409 TDIHKALDLLDRAFS 423
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 374 bits (962), Expect = e-126
Identities = 91/465 (19%), Positives = 174/465 (37%), Gaps = 59/465 (12%)
Query: 26 AQPQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYS 85
P T S++L+ + +++G+ + D +GN+ LD S S
Sbjct: 14 DGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQIS 73
Query: 86 AVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF------GYDMVLPM 138
++ G+ HP ++K +Q+ T +R A F E+L G ++ M
Sbjct: 74 SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITM 133
Query: 139 NTGAEGVETALKLARKWGYVKKKFSIDEAI------------------IVSCCGCFHGRT 180
G+ E A K W K++ + I+S G FHGRT
Sbjct: 134 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRT 193
Query: 181 LAAISMSCDNEAI--RGFGPLLPGHLKV-----------------DFGDITALEKIFKE- 220
+ ++ + ++AI + + +E + +
Sbjct: 194 MGCLATTH-SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKY 252
Query: 221 --SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278
+AG + EPIQ E G D + + +RD+ K+ + DE+Q+G +G+ A
Sbjct: 253 RKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWA 312
Query: 279 SDWEEVR--PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 336
+ + D++ K + G E P +T+ G+P + +
Sbjct: 313 HEHWGLDDPADVMTFSKKMMTGG-FFHK-----EEFRPNAPYRIFNTWLGDPSKNLLLAE 366
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 396
+++I+ E L +AH G+ L L +Q ++P ++ VRGRG F + + ++
Sbjct: 367 VINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI---RN 423
Query: 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
+ + +G++ D +R P L + D+L
Sbjct: 424 KLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = e-102
Identities = 113/459 (24%), Positives = 207/459 (45%), Gaps = 58/459 (12%)
Query: 32 TSPSSSSSQQLINLEYEYSAHNYHPV----PIVFSQAKGSSIWDPEGNKYLDFLSAYSAV 87
+ + + +L+ + +Y H P V ++A+G + D +G +YLD +S V
Sbjct: 2 NAMKTKQTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCV 61
Query: 88 NQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVE 146
N G+ ++ +A +Q + L+ + ++ AE+L G ++ N+G+E E
Sbjct: 62 NSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANE 121
Query: 147 TALKLARKWGYV-----KKKF-SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL 200
TA K+AR++ + KF S +HG T+A ++ + + + P
Sbjct: 122 TAFKIARQYYAQKGEPHRYKFMSRYRG--------YHGNTMATMAATGQAQRRYQYEPFA 173
Query: 201 PGHLKVD---------------FGD--ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIP 242
G L V + + ++++ + IA F+ EPI G+++
Sbjct: 174 SGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITGGGILMA 233
Query: 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPV 302
P Y+KAV + C K+ L+I+DE+ G R+G+ +V+PD++ + K + +P+
Sbjct: 234 PQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPL 293
Query: 303 SAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356
SA +E+ + H +TFGGNP A A+A+ +L++I +E L ERSA +G
Sbjct: 294 SATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSL 353
Query: 357 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS--------AYDICLKMK 403
L + L + + P V ++RG+GL +E K + + L +
Sbjct: 354 LLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIG 412
Query: 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
G+ ++ + L PPL ISS E+ L +E
Sbjct: 413 RNGMTTAGYNNILT-LAPPLVISSEEIAFVIGTLKTAME 450
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 5e-98
Identities = 117/478 (24%), Positives = 194/478 (40%), Gaps = 72/478 (15%)
Query: 30 GGTSPSSSSSQQLINLEYEYSAHNYHPV----------PIVFSQAKGSSIWDPEGNKYLD 79
GG S + + E ++ + +V + +G I D G +YLD
Sbjct: 6 GGQQMGRGSMNKPQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLD 65
Query: 80 FLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGY 132
S + G H ++ A + Q E+ Y+ F +E+L + +
Sbjct: 66 ANSGLWNMVAGFDHKGLIDAAKAQYERF-----PGYHAFFGRMSDQTVMLSEKLVEVSPF 120
Query: 133 DM--VLPMNTGAEGVETALKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186
D V N+G+E +T +K+ G +K+ I++ +HG T + SM
Sbjct: 121 DSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKR------KILTRWNAYHGVTAVSASM 174
Query: 187 SCDNEAIRGFGPLLPGHLKV----------------DFGDITALE---KIFKESGDQIAG 227
+ FG LPG + + F A E I +E D IAG
Sbjct: 175 T-GKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAG 233
Query: 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD 287
F EP+ G GVI P GY +A+ + KY+I +I+DE+ G R+G + PD
Sbjct: 234 FFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPD 293
Query: 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDV 340
+I K L G P+ AV+ E+ ++ HG T G+P+ A+A+ ++DV
Sbjct: 294 AIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDV 353
Query: 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS- 394
+ +E LAE L + L I + PN + E RG G A+E KT +
Sbjct: 354 VMNEGLAENVRRLAPRFEERLKHI-AERPN-IGEYRGIGFMWALEAVKDKASKTPFDGNL 411
Query: 395 --AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450
+ I + G++ +P ++V L PP ++ ++ E L L+ ++
Sbjct: 412 SVSERIANTCTDLGLICRPLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAEVAA 468
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 3e-96
Identities = 114/434 (26%), Positives = 186/434 (42%), Gaps = 55/434 (12%)
Query: 51 AHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110
+ P P+ + +G ++D G +YLD S N GH ++ + + QA +L
Sbjct: 6 YRSSKPYPVA-VRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL--- 61
Query: 111 SRAFYNDKF----PVF--AERLTSMFGYDM--VLPMNTGAEGVETALKLARKW----GYV 158
F + + A RL G ++ G+E E+A+KLAR++ G
Sbjct: 62 --PFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119
Query: 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV--------DFGD 210
+ +++ +HG +L +++ S + PL+ G
Sbjct: 120 GRF------KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA 173
Query: 211 ITA--LEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266
A L + + G + +A F+ EP+ G + P GY + VRD+C + I+ IADE+
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 267 QSGLARSGRMLASD-WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE----HG 321
SG+ R G LA W V PD+ +LGK L G P++ +LA +V + G HG
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381
T+ G+P++ A ++ LD++ E L + G +L L +Q +FP + +VRG GL
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFP-QMMQVRGTGLL 352
Query: 382 NAVEF----DKTALPVS--AYDICLKMKERGILAKPTHDTIVR-------LTPPLSISSN 428
V A A I +RG++ P L PPLSI++
Sbjct: 353 LGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAA 412
Query: 429 ELQEGSKALHDVLE 442
E+ L LE
Sbjct: 413 EVDGLLALLAGALE 426
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 295 bits (757), Expect = 1e-95
Identities = 108/465 (23%), Positives = 194/465 (41%), Gaps = 74/465 (15%)
Query: 34 PSSSSSQQLINLEYEYSAHNYHPV---------PIVFSQAKGSSIWDPEGNKYLDFLSAY 84
P + + L+ ++ P P + A+GS + D +G K D LS
Sbjct: 3 PEHAGASLASQLK---LDAHWMPYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGL 59
Query: 85 SAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--V 135
GH +I +A+ +Q L + F F AE++T + ++ V
Sbjct: 60 WTCGAGHTRKEIQEAVAKQLSTL-----DYSP-GFQYGHPLSFQLAEKITDLTPGNLNHV 113
Query: 136 LPMNTGAEGVETALKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191
++G+E TA+K+ R + G K ++ +HG +A S+ N
Sbjct: 114 FFTDSGSECALTAVKMVRAYWRLKGQATKT------KMIGRARGYHGVNIAGTSLGGVNG 167
Query: 192 AIRGFGPLLPGHLKV----------------DFGDITA---LEKIFKESGDQIAGFLFEP 232
+ FG + + + G A L+ I IA EP
Sbjct: 168 NRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEP 227
Query: 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292
+ G AGV++PP+GYLK R++C+++NIL++ DE+ +G R+G M +D V PD++ +
Sbjct: 228 LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIA 287
Query: 293 KALGGGVIPVSAVLADKEVMLCIQPGE---------HGSTFGGNPLASAVAIASLDVIRD 343
K + G IP+ AV+A E+ HG T+ +P+A A +A+L +++
Sbjct: 288 KQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK 347
Query: 344 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--DKTALPVSAYDICLK 401
E L + A + + L I + N V ++R GL A++ V ++ +
Sbjct: 348 ENLVQSVAEVAPHFEKALHGI-KGAKN-VIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMA 405
Query: 402 MKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHDVLE 442
+ + G + DT+ P + +L + L+ +L+
Sbjct: 406 LWKAGFYVRFGGDTLQ-FGPTFNSKPQDLDRLFDAVGEVLNKLLD 449
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 293 bits (752), Expect = 7e-95
Identities = 111/455 (24%), Positives = 179/455 (39%), Gaps = 78/455 (17%)
Query: 51 AHNYHPV------------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMK 98
H +HP + + +G ++WD G K +D + VN G+ KI
Sbjct: 15 DHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIAD 74
Query: 99 ALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETAL 149
A+ QA+ L A+Y+ A+ + M V +G++ ET +
Sbjct: 75 AIATQAKNL-----AYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNI 129
Query: 150 KLARKWGYV-----KKKF-SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH 203
KL + V KKK S +HG + S++ + F
Sbjct: 130 KLIWYYNNVLGRPEKKKIISRWRG--------YHGSGVMTGSLTGLDLFHNAFDLPRAPV 181
Query: 204 LKV----------------DFGDITA--LE-KIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
L F A LE I E + IA F+ EPI G G++ PP
Sbjct: 182 LHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPA 241
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304
GY + ++ + KY++L++ADE+ +G R G M SD ++PD++ + K L P+S
Sbjct: 242 GYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSG 301
Query: 305 VLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 357
V+ V + G HG T+ +P+ A +A+L++I + L + G
Sbjct: 302 VIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYF 361
Query: 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGIL- 408
R L K N V EVRG G+ AVEF D+ S + + G++
Sbjct: 362 RAELAKAVGGHKN-VGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIG 420
Query: 409 -AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
A P D + PPL ++ + D ++
Sbjct: 421 RAMPQGDILG-FAPPLCLTREQADIVVSKTADAVK 454
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 291 bits (748), Expect = 2e-94
Identities = 114/437 (26%), Positives = 199/437 (45%), Gaps = 55/437 (12%)
Query: 49 YSAH-NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107
++ +Y P++ G + D G +Y D S+ GH ++ A+++Q K+
Sbjct: 17 FTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI 76
Query: 108 ---TLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARK-W---GYV 158
TL N AE L + + V ++GAE +E ALK+A + W G
Sbjct: 77 AHSTLLG--MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP 134
Query: 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKVDF--------- 208
+K+ ++ +HG T+ A+S+ E +GPL+ K
Sbjct: 135 EKQ------KFIAMKNGYHGDTIGAVSV-GSIELFHHVYGPLMFESYKAPIPYVYRSESG 187
Query: 209 -------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNIL 260
+ L ++ +E ++IA E +QG +G+I+ P+GYL VR+LC+ Y++L
Sbjct: 188 DPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVL 247
Query: 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE- 319
MI DE+ +G R+G+M A + E V+PD++ GK + GG +P++ A +++
Sbjct: 248 MIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYE 307
Query: 320 ------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 373
HG ++ GN L AVA+ +L + E + E+ A ++L L + P+ V
Sbjct: 308 NLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDL-HALPH-VG 365
Query: 374 EVRGRGLFNAVEFDKTALPVSAYD--------ICLKMKERGILAKPTHDTIVRLTPPLSI 425
++R G E ++ Y + LKM+E G+L +P D I PPL+
Sbjct: 366 DIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIA-FLPPLAS 424
Query: 426 SSNELQEGSKALHDVLE 442
++ EL E + +
Sbjct: 425 TAEELSEMVAIMKQAIH 441
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 292 bits (749), Expect = 3e-94
Identities = 106/484 (21%), Positives = 205/484 (42%), Gaps = 66/484 (13%)
Query: 32 TSPSSSSSQQLINLEYEYSAHNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFL 81
+ + ++ L+ +AH+ HP V ++A+G + D EG + LD +
Sbjct: 2 SLATITNHMPTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAM 61
Query: 82 SAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM 134
+ VN G+ ++ + Q +L +YN F P A++L + D+
Sbjct: 62 AGLWCVNIGYGRDELAEVAARQMREL-----PYYNTFFKTTHVPAIALAQKLAELAPGDL 116
Query: 135 --VLPMNTGAEGVETALKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188
V G+E +T +++ R + G +K +I+S +HG T+A+ ++
Sbjct: 117 NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKT------VIISRKNAYHGSTVASSALGG 170
Query: 189 DNEAIRGFGPLLPGHLKVD---------------FGDITA--LE-KIFKESGDQIAGFLF 230
+ L+P ++ FG A LE I + +++A F+
Sbjct: 171 -MAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIA 229
Query: 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI 290
EP+QG GVI+ PD Y ++ +C KY+IL+IADE+ G R+G + +RP ++
Sbjct: 230 EPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT 289
Query: 291 LGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDEKLAE 348
+ K L G P+ + EV I E HG T+ G+P+A+AVA+ +L ++ +E + +
Sbjct: 290 IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILD 349
Query: 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS----AYDIC 399
++ + ++ P V E + G+ ++ + Y
Sbjct: 350 HVRNVAAPYLKEKWEALTDHPL-VGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICR 408
Query: 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPAT 459
+ ++ + D ++ ++PPL I+ E+ E + L+ ++ K +
Sbjct: 409 ERCFANNLIMRHVGDRMI-ISPPLVITPAEIDEMFVRIRKSLDEAQAEIEKQGLMKSEGH 467
Query: 460 PCHR 463
H
Sbjct: 468 HHHH 471
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 287 bits (737), Expect = 1e-92
Identities = 116/445 (26%), Positives = 191/445 (42%), Gaps = 66/445 (14%)
Query: 51 AHNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKAL 100
AH+ HP V ++ +G +WD EGNK +D ++ VN G+ +A
Sbjct: 16 AHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAA 75
Query: 101 QEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETALKL 151
+ Q E+L FYN F V + L + V N+G+E V+T +++
Sbjct: 76 RRQMEEL-----PFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRM 130
Query: 152 ARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV- 206
R++ G +KK ++ +HG T+ S+ +PG +
Sbjct: 131 VRRYWDVQGKPEKK------TLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIE 184
Query: 207 --------------DFGDITA--LE-KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249
+FG + A LE KI + D++A F+ EPIQG GVI+PP Y
Sbjct: 185 QPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPE 244
Query: 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADK 309
+ +C KY++L++ADE+ G R+G +PD+ K L G +P+ AV K
Sbjct: 245 IERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGK 304
Query: 310 EVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQ 365
V + G HG T+ G+P+ +AVA A++ +RDE + +R +G +++ +
Sbjct: 305 RVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETF 364
Query: 366 QQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAKPTHDTIV 417
+F + V +VRG G+ A + P ++ + D IV
Sbjct: 365 SRFEH-VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIV 423
Query: 418 RLTPPLSISSNELQEGSKALHDVLE 442
PPL ++ E+ E LE
Sbjct: 424 -SAPPLVMTRAEVDEMLAVAERCLE 447
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 1e-90
Identities = 111/420 (26%), Positives = 194/420 (46%), Gaps = 40/420 (9%)
Query: 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108
+++ A+G + +G + +D +S++ A G+ HP++ A++ Q + ++
Sbjct: 17 FTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS 76
Query: 109 LSSRA-FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLA----RKWGYVKKK 161
+ +L +M + V ++G+ VE A+K+A + G +++
Sbjct: 77 HVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQR 136
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI--RGFGPLLPGHLKVDF----------- 208
F ++ +HG T A+S+ CD + + LP +L
Sbjct: 137 F-------LTFRNGYHGDTFGAMSV-CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDE 188
Query: 209 GDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267
D+ ++ +IA + EPI QG G+ + +LK +R +C + IL+IADEI
Sbjct: 189 RDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA 248
Query: 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGS 322
+G R+G++ A + E+ PD++ LGKAL GG + +SA L +EV I GE HG
Sbjct: 249 TGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382
TF GNPLA A A ASL ++ ++ A + +LR+ L + V +VR G
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIG 366
Query: 383 AVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
VE PV+ + E+G+ +P I L PP I +LQ + A++ ++
Sbjct: 367 VVETTH---PVNMAALQKFFVEQGVWIRPFGKLIY-LMPPYIILPQQLQRLTAAVNRAVQ 422
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 8e-90
Identities = 100/487 (20%), Positives = 184/487 (37%), Gaps = 71/487 (14%)
Query: 33 SPSSSSSQQLINLEYEYSAHNYHPV----------PIVFSQAKGSSIWDPEGNKYLDFLS 82
S + ++ + H P V + A+G + +G + +D +
Sbjct: 2 SLRNDATNAAGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPA 61
Query: 83 AYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF----PVF--AERLTSMFGYDM-- 134
G+ +I+ A+ QA L + + + P AE++ ++ D+
Sbjct: 62 GMWCAQVGYGRREIVDAMAHQAMVL-----PYASPWYMATSPAARLAEKIATLTPGDLNR 116
Query: 135 VLPMNTGAEGVETALKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190
+ G+ V++AL+ + + G +KK I+ +HG T + +
Sbjct: 117 IFFTTGGSTAVDSALRFSEFYNNVLGRPQKK------RIIVRYDGYHGSTALTAACTGRT 170
Query: 191 EAIRGFGPLLPGHLKV--------------DFGDITA---LEKIFKESGDQIAGFLFEPI 233
F + F D ++I D IA FL EPI
Sbjct: 171 GNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPI 230
Query: 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVRPDMVILG 292
GVIIPP GY + +C K++IL I+DE+ +G R G AS+ V PD++
Sbjct: 231 LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFA 290
Query: 293 KALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEK 345
K + G +P+ + + V+ I +G T+ P+A A A+A+++++ E
Sbjct: 291 KGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREG 350
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYD 397
+ +++ + + L + + P V E R GL V+
Sbjct: 351 IVDQAREMADYFAAALASL-RDLPG-VAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLK 408
Query: 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE--LDLPKMRKPKPAD 455
I + E G++ +P D V ++PPL IS ++ E + + + +PA
Sbjct: 409 IDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAA 467
Query: 456 APATPCH 462
H
Sbjct: 468 VEGHHHH 474
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 7e-89
Identities = 113/456 (24%), Positives = 195/456 (42%), Gaps = 53/456 (11%)
Query: 23 SYGAQPQGGTSPSSS-SSQQLINLEYE-----YSAH-NYHPVPIVFSQAKGSSI---WDP 72
+ + + + +Q+I ++ YS+ P+V A G+ + D
Sbjct: 13 GLVPRGSHMAAATGGLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDG 72
Query: 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVF--AERLT 127
+ + LD +S++ GH HP + +AL Q + ++ P A+ L
Sbjct: 73 QPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGG--LTHE--PAARLAKLLV 128
Query: 128 SMF--GYDMVLPMNTGAEGVETALKLA----RKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181
+ G D V ++G+ VE A K+A R G K+ +++ G +HG T
Sbjct: 129 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR------RLMTWRGGYHGDTF 182
Query: 182 AAISMSCDNEAIRG--FGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEP 232
A+S+ CD + +L + A E + ++A + EP
Sbjct: 183 LAMSI-CDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEP 241
Query: 233 I-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291
+ QG G+ YL +RD+C +Y +L+I DEI +G R+G + A+D V PD++ +
Sbjct: 242 VVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCV 301
Query: 292 GKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKL 346
GKAL GG + ++A L +V I G HG TF NPLA AV++AS++++ +
Sbjct: 302 GKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDW 361
Query: 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG 406
R L L L + V +VR G +E D+ PV +RG
Sbjct: 362 RTRITELAAGLTAGLDTARAL--PAVTDVRVCGAIGVIECDR---PVDLAVATPAALDRG 416
Query: 407 ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ +P + + PP + E+ + + A+ +V
Sbjct: 417 VWLRPFRNLVY-AMPPYICTPAEITQITSAMVEVAR 451
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 3e-67
Identities = 74/475 (15%), Positives = 143/475 (30%), Gaps = 92/475 (19%)
Query: 56 PVPIVFSQAKGSSIW------DPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLT 108
V ++ S G + + ++ D +++ ++ + + A +
Sbjct: 356 TVTVIDS-RCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414
Query: 109 LSSRA-FYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSI 164
+ AE L G V + G+ +E ALK+A + V F
Sbjct: 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCE 474
Query: 165 DEAI-------IVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLL---------------- 200
+++ G +HG TL A+ G
Sbjct: 475 ATEEEKHIVVKVIALRGSYHGDTLGAMEA-QAPSPYTGFLQQPWYTGRGLFLDPPTVFLS 533
Query: 201 --------PGHLKVDFGD------------------------ITALEKIFKE-----SGD 223
P + L K +E
Sbjct: 534 NGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSA 593
Query: 224 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+ + EP+ G G+ + + + + + C I +I DE+ +G R G ++
Sbjct: 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 336
+PD+ K L GG++P++ LA V HG ++ + + A A
Sbjct: 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQ----QQFPNYVKEVRGRGLFNAVEFD----- 387
++ +D + G+ LR+ + V+ V G A+E
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSA-VQRVVVIGTLFALELKADASN 772
Query: 388 KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ A + + ++E GI +P + I L S + L+ L
Sbjct: 773 SGYASLYAKSLLIMLREDGIFTRPLGNVIY-LMCGPCTSPEICRRLLTKLYKRLG 826
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 3e-60
Identities = 83/331 (25%), Positives = 128/331 (38%), Gaps = 54/331 (16%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113
+ P P+V +Q GS D +G+ Y++FL Y+A GH HP I A++
Sbjct: 79 HRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN---- 134
Query: 114 FYNDKF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----K 161
+FAE + F D+V N+G E AL A +
Sbjct: 135 -----LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATAT--AITGRKTVLA 187
Query: 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGH-LKVDFGDITALEKIFK 219
F G +HG L S G P P H + + D+ + K
Sbjct: 188 FD----------GGYHGGLLNFAS---------GHAPTNAPYHVVLGVYNDVEGTADLLK 228
Query: 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGRMLA 278
G A L EP+ G G + +L +R S+ L+I DE+ + L+ G A
Sbjct: 229 RHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG---A 285
Query: 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAV 333
+ + D+ LGK +GGG + A +++M P G+ TF N L +
Sbjct: 286 QEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSA 344
Query: 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKI 364
A+L I + A + G+ R +L +I
Sbjct: 345 GHAALTQIYTRQAASDLSASGDRFRANLNRI 375
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-57
Identities = 86/409 (21%), Positives = 144/409 (35%), Gaps = 89/409 (21%)
Query: 54 YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113
+ P + S A+G D +GN YLDF + A+ GH HP++ A+ E
Sbjct: 36 FDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ---- 91
Query: 114 FYNDKF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----K 161
+ +AER+ + F + +G E AL++AR + + +
Sbjct: 92 -----YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVAR--AFTGRRMILR 144
Query: 162 FSIDEAIIVSCCGCFHGRT--LAAISMSCDNEAIRGFGPLLPGH-------------LKV 206
F G +HG A+ G+ G L +
Sbjct: 145 FE----------GHYHGWHDFSAS-----------GYNSHFDGQPAPGVLPETTANTLLI 183
Query: 207 DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266
DI + ++F G IA F+ EP+ GV D +L+ +L +Y L I DE+
Sbjct: 184 RPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEV 243
Query: 267 QSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-- 322
SG + G +V+PD+ L KA GG +P + ++VM + G
Sbjct: 244 ISGFRVGNHG---MQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVL 299
Query: 323 ---TFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375
TF GNP+ +A AIA++D I + K+ + E + + +
Sbjct: 300 HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFAR--KGLNWLAYGR 357
Query: 376 RG-RGLFNAVEFDKTALPVSAYDICLK------------MKERGILAKP 411
L + + T + + G+
Sbjct: 358 FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGG 406
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 4e-53
Identities = 106/346 (30%), Positives = 155/346 (44%), Gaps = 77/346 (22%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
PI + KG+ WD +GNKY+D+L+AY + GH HP I KA+ AE L
Sbjct: 38 PIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVL-------- 89
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
+ P FA+ L D V +N+G E V T +++AR Y + KF+
Sbjct: 90 -YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVAR--AYTGRTKIMKFA-- 144
Query: 166 EAIIVSCCGCFHGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDF 208
GC+HG + L A A G GP G + V F
Sbjct: 145 --------GCYHGHSDLVLVA--------A--GSGPSTLGTPDSAGVPQSIAQEVITVPF 186
Query: 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268
++ L++ + G ++A L EPI G G++ P G+L+ V +L + L+I DE+ +
Sbjct: 187 NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246
Query: 269 G--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---- 322
G A D V PD+ LGK +GGG +P+ A KE+M + P G
Sbjct: 247 AFRFMYGG---AQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPL--GPAYQA 300
Query: 323 -TFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFK 363
T GNP + A IA L+V++ EKL E A L + + + K
Sbjct: 301 GTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAK 346
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 2e-52
Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 75/345 (21%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P + +G+ ++ +G + +D + AY + GH HP++++A++E + L
Sbjct: 39 PFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWL-------- 90
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
+ P + AE++ M+ +N+G E TA++LAR GY + KF
Sbjct: 91 -YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLAR--GYTGRDLILKFD-- 145
Query: 166 EAIIVSCCGCFHGRT----LAAISMSCDNEAIRG---FG-PLLPG-------H-LKVDFG 209
GC+HG +AA S +G P G L +
Sbjct: 146 --------GCYHGSHDAVLVAAGS---------AAAHYGVPTSAGVPEAVARLTLVTPYN 188
Query: 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269
D+ ALE++F E GD+IAG + EP+ AGVI P +L A++ L + L+I DE+ +G
Sbjct: 189 DVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTG 248
Query: 270 --LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS----- 322
L G A + + D+++LGK +GGG PV AV +EVM + P G
Sbjct: 249 FRLGLEG---AQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQ--GKVFNAG 302
Query: 323 TFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFK 363
TF +P+ A +A+L + + E + L E + L +
Sbjct: 303 TFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDR 347
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 3e-52
Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 77/346 (22%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T
Sbjct: 35 PIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS-------- 86
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
F P V AE + +MV +N+G E L++ R Y + KF
Sbjct: 87 -FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMR--AYTGRDKIIKFE-- 141
Query: 166 EAIIVSCCGCFHGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDF 208
GC+HG L A G G G L +
Sbjct: 142 --------GCYHGHADMFLVK--------A--GSGVATLGLPSSPGVPKKTTANTLTTPY 183
Query: 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268
D+ A++ +F E+ +IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +
Sbjct: 184 NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT 243
Query: 269 G--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---- 322
G +A G + V PD+ LGK +GGG +PV A +E+M + P G
Sbjct: 244 GFRIAYGG---VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA--GPMYQA 297
Query: 323 -TFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFK 363
T GNPLA I +L+++R E L + + L + L +
Sbjct: 298 GTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 6e-52
Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 76/345 (22%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P+ + KGS ++D +GN+Y+D++ ++ + GH + ++++AL+ AE+ T
Sbjct: 36 PLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS-------- 87
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
F P A+ + ++V +N+G E +AL+LAR GY + KF
Sbjct: 88 -FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLAR--GYTGRNKILKFI-- 142
Query: 166 EAIIVSCCGCFHGRT---LAAISMSCDNEAIRGFGPL---LPGH-----------LKVDF 208
GC+HG L A G G LP + V +
Sbjct: 143 --------GCYHGHGDSLLIK--------A--GSGVATLGLPDSPGVPEGVAKNTITVAY 184
Query: 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268
D+ +++ F++ GD IA + EP+ G GV+ P G+L+ +R++ + L+I DE+ +
Sbjct: 185 NDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT 244
Query: 269 G--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---- 322
G +A + + V PD+ LGK +GGG +PV A E+M + P G
Sbjct: 245 GFRVAYNC---GQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAPS--GPIYQA 298
Query: 323 -TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK 363
T GNPLA A +L + + ++ L LR+ K
Sbjct: 299 GTLSGNPLAMAAGYETLVQLTPESYVEFERKAEMLEAGLRKAAEK 343
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 179 bits (458), Expect = 7e-52
Identities = 97/346 (28%), Positives = 151/346 (43%), Gaps = 77/346 (22%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P+ +A G+ ++D +G Y+D++ ++ + GH HP I +A+ E E+
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS-------- 87
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
F P A+ +T + DMV +N+G E +A++LAR GY + KF
Sbjct: 88 -FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLAR--GYTGRDKIIKFE-- 142
Query: 166 EAIIVSCCGCFHGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDF 208
GC+HG L A G G L G L +
Sbjct: 143 --------GCYHGHADCLLVK--------A--GSGALTLGQPNSPGVPTDFAKHTLTCTY 184
Query: 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268
D+ ++ + F++ ++A + EP+ G I P +L +R LC ++ L+I DE+ +
Sbjct: 185 NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT 244
Query: 269 G--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---- 322
G +A +G A D+ V PD+ LGK +GGG +PV A +EVM + P G
Sbjct: 245 GFRVALAG---AQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPT--GPVYQA 298
Query: 323 -TFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFK 363
T GNP+A A A L I E L E + L LR +
Sbjct: 299 GTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKE 344
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 4e-49
Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 79/347 (22%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P + +G+ +WD +GN+YLD++ ++ + GH HPK++ ++E E+
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLT-------- 86
Query: 118 KF--P-----VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSID 165
F P A+++ + D+V +N+G E +AL+LAR GY + KF
Sbjct: 87 -FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLAR--GYTGRPYIVKFR-- 141
Query: 166 EAIIVSCCGCFHGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDF 208
G +HG L A G G L G L +++
Sbjct: 142 --------GNYHGHADGLLVE--------A--GSGALTLGVPSSAGVPEEYAKLTLVLEY 183
Query: 209 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268
D L ++ K G++IA +FEP+ G AGV++P + +LKA+ + Y +L+IADE+ +
Sbjct: 184 NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMT 242
Query: 269 G--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---- 322
G LA G A++ ++PD+V LGK LGGG +P +A +E+M + P G
Sbjct: 243 GFRLAFGG---ATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPL--GPVYQA 296
Query: 323 -TFGGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFK 363
T GNPLA A +A+L+++ + L + A L L++ L +
Sbjct: 297 GTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKE 343
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 5e-10
Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 47/350 (13%)
Query: 122 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181
++ +F YD ++P + G + K+ +A FH T
Sbjct: 81 LKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQ-----KEGKAKNPVFISNFHFDTT 135
Query: 182 AAISMSCDNEAIRGFGP-LLPGHLKVDFG---DITALEK-IFKESGDQIAGFLFEPIQGE 236
AA +AI D+ DI L++ I + D I +
Sbjct: 136 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNS 195
Query: 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA------RSGRMLASDWEEVRPDMVI 290
AG LK V ++ ++ I ++ D + R + + +EV DM
Sbjct: 196 AGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK 255
Query: 291 LG--------KALGGGVIPVSAVLADKEVMLCI----QPGEHGSTFGGNP--LASAVAIA 336
K + + A+ ++E+ P E T+GG +A+
Sbjct: 256 YADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQG 315
Query: 337 SLDVIRDEKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV---EFDKTA 390
+ +E L R +LG+ LR+ IQ + V + L + +F A
Sbjct: 316 LEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQA 375
Query: 391 LPVSAYDIC-LKMKERGILA----------KPTHDTIVRLTPPLSISSNE 429
+ + Y ++ E G K +RLT + +N+
Sbjct: 376 VINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTND 425
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 8e-07
Identities = 65/377 (17%), Positives = 118/377 (31%), Gaps = 54/377 (14%)
Query: 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLAR 153
+ ++ A + ++ F + +FG+ ++P + G +LA
Sbjct: 52 GTNAMSDKQWAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAI 111
Query: 154 KWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 210
K G F+ + + D L K D D
Sbjct: 112 KPGQYVAGNMYFTTTRYHQEKNGA-------VFVDIVRD----EAHDAGLNIAFKGDI-D 159
Query: 211 ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS- 268
+ L+K+ E G + IA AG ++AVR+L + I + D +
Sbjct: 160 LKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCV 219
Query: 269 ------GLARSGRMLASDWEEVRP-----DMV------ILGKALGGGVIPVSAVLADKEV 311
G S E V D +GG + +
Sbjct: 220 ENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAK 279
Query: 312 MLCIQPGEHGSTFGGN--PLASAVAIASLDVIRDEKLAER---SAHLGEELRQHLFKIQQ 366
L E ++GG A+AI + ++ E + R +LG++L+ I +
Sbjct: 280 ELV-VVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVE 338
Query: 367 QFPNYVKEVRGRGLFNAV---EFDKTALPVSAYDIC-LKMKERGILAKPTHDT------- 415
+ + R + EF +L S Y ++ ERGI++ ++
Sbjct: 339 PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRP 398
Query: 416 ---IVRLTPPLSISSNE 429
VRLT P + +
Sbjct: 399 KLETVRLTIPRRVYTYA 415
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 58/327 (17%), Positives = 95/327 (29%), Gaps = 101/327 (30%)
Query: 216 KIFKESGDQIA-GFLFEPIQGEA-GVIIPPDGYLKAVRDLC------SKYNI--LMIADE 265
+ F E +I FL PI+ E + Y++ L +KYN+ L +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 266 IQSGLARSGRMLASDWEEVRPD--MVILGKALGGG--VIPVSAVLADKEVMLCIQPGEHG 321
++ L E+RP ++I G G G + V +V +
Sbjct: 140 LRQAL-----------LELRPAKNVLIDGVL-GSGKTWV-ALDVCLSYKVQCKMDFKIFW 186
Query: 322 STFG--GNPLASAVAIASLDVIRDEKLAERSAH----------LGEELRQHLFKIQQQFP 369
+P + L D RS H + ELR L K + +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLK-SKPYE 244
Query: 370 N---YVKEVRGRGLFNAVEFD---KTAL------------PVSAYDICLKMKERG----- 406
N + V+ +NA F+ K L + I L
Sbjct: 245 NCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 407 ---ILAKPTHDTIVRLTP------PLSIS--SNELQEG-----------SKALHDVLE-- 442
+L K L P +S + +++G L ++E
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 443 ---LDLPKMRK--------PKPADAPA 458
L+ + RK P A P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 61/416 (14%), Positives = 119/416 (28%), Gaps = 122/416 (29%)
Query: 87 VNQGHCH-PK-IMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEG 144
+N +C+ P+ +++ LQ P + R +
Sbjct: 187 LNLKNCNSPETVLEMLQ-----------KLLYQIDPNWTSRSDHSSNI----KLRI--HS 229
Query: 145 VETALK-LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-------DNEAIRGF 196
++ L+ L + Y + V + + A ++SC +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLN---VQ-----NAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQG---EAGVIIPPDGYLKAVRDL 253
H+ +D +T L E + +L Q E P
Sbjct: 282 SAATTTHISLDHHSMT-LTP--DEVKSLLLKYLDCRPQDLPREVLTTNP----R-----R 329
Query: 254 CSKYNILMIADEIQSGLARSGR------------MLAS----DWEEVRP---DMVILGKA 294
S +IA+ I+ GLA + +S + E R + +
Sbjct: 330 LS-----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP- 383
Query: 295 LGGGV-IPVSAVLA-------DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRDEK 345
IP + +L+ +VM+ + S P S ++I S+ + ++ +
Sbjct: 384 ---SAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 346 LAERSAHLGEELRQHLFKIQQQFP----------NYVKEVRGRGLFNAVEFDKTALPVSA 395
E + H + H + I + F Y G L N ++ L
Sbjct: 440 ENEYALH--RSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 396 Y-DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450
+ D R + K HD+ S ++ + L L +
Sbjct: 497 FLDF------RFLEQKIRHDSTAW-------------NASGSILNTL-QQLKFYKP 532
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 51/193 (26%)
Query: 244 DGY---LKAVRDLCSKYN-ILMIADEIQSG-LARSGRMLASDWEEVRPD--MVILGKALG 296
DG L ++ + ++N LM+ D +G + GR ++V+P+ +V GK G
Sbjct: 181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG 239
Query: 297 --GGVIPVSAVLADKEVM-LCIQPGEHGSTF----GGNPLASAVAIASLDVIRDEKLAER 349
G AVL V +Q P + ASL VIR ++
Sbjct: 240 VSGA-----AVLCSSTVADYLLQ---FARHLIYSTSMPPAQAQALRASLAVIRSDE---- 287
Query: 350 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD----KTA-LPV------SAYDI 398
G+ R+ L + +F R + F +A P+ A +
Sbjct: 288 ----GDARREKLAALITRF---------RAGVQDLPFTLADSCSAIQPLIVGDNSRALQL 334
Query: 399 CLKMKERGILAKP 411
K++++G
Sbjct: 335 AEKLRQQGCWVTA 347
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.98 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.98 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.98 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.98 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.98 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.98 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.98 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.98 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.97 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.97 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.97 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.97 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.97 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.97 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.97 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.96 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.96 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.96 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.96 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.96 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.96 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.96 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.95 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.95 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.95 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.95 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.95 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.95 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.95 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.95 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.95 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.95 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.95 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.94 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.94 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.94 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.94 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.94 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.94 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.94 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.94 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.94 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.94 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.94 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.93 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.93 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.93 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.93 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.93 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.93 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.93 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.93 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.93 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.93 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.93 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.92 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.92 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.92 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.92 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.92 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.92 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.92 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.92 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.92 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.92 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.91 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.91 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.91 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.91 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.91 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.91 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.9 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.9 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.9 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.9 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.9 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.89 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.89 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.88 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.88 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.88 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.87 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.87 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.87 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.86 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.86 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.86 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.86 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.85 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.85 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.85 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.84 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.84 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.84 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.83 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.83 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.81 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.8 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.79 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.79 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.78 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.77 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.77 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.76 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.74 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.73 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.72 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.7 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.7 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.61 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.58 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.41 |
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-70 Score=550.68 Aligned_cols=402 Identities=29% Similarity=0.507 Sum_probs=355.2
Q ss_pred CCCCCCchHHHHHHHhhhcccCC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 110 (470)
+..|+|+|++++++.++++...+ .++|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.+|++++.+.
T Consensus 20 t~iPGP~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~ 99 (456)
T 4atq_A 20 GAFPGPKSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT 99 (456)
T ss_dssp SSSSCHHHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC
T ss_pred CCCCChHHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc
Confidence 45678899999999999987765 46799999999999999999999999999999999999999999999999998765
Q ss_pred CCC-CCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 111 SRA-FYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 111 ~~~-~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
... ..++...+++++|.++.+ .++++|+|||+||++.|+|+++.+ .++..|+.++++|||++.+++++
T Consensus 100 ~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~--------t~r~~ii~~~~~yHG~t~~als~ 171 (456)
T 4atq_A 100 CFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLA--------TGRDAVVAFDHAYHGRTNLTMAL 171 (456)
T ss_dssp TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSHHHHHH
T ss_pred ccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhh--------hcCCeEEEEecccCCcccccccc
Confidence 442 345667889999999874 568999999999999999999986 36779999999999999999998
Q ss_pred cCCc-ccccCCCCCCCCeeeecCC-----------CHHHHHHHHHh-----cCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 187 SCDN-EAIRGFGPLLPGHLKVDFG-----------DITALEKIFKE-----SGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~~~~~~-----------d~~~Le~~l~~-----~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
++.. .++..+.++.+++..+|++ +.+.+++.++. .++++++||+||+++.+|.+.|+++|+++
T Consensus 172 t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~ 251 (456)
T 4atq_A 172 TAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPA 251 (456)
T ss_dssp CCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred ccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHH
Confidence 8765 3566778888887777654 23444443332 23589999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHH
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~ 329 (470)
|+++|++||++||+||||+||||+|++|+++++|+.||+++++|+++||+ |+|++++++++++.+.+..+++||++||+
T Consensus 252 lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~-P~~av~~~~~i~~~~~~~~~~~Tf~gnpl 330 (456)
T 4atq_A 252 LSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGL-PLSAITGRADLLDAVHPGGLGGTYGGNPV 330 (456)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred HHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcC-CceeeEecHHHHhcccccCCCCCCCCChH
Confidence 99999999999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC----CceEEEeccceeEEEEeccCCC----chhHHHHHHH
Q 012138 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP----NYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLK 401 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p----~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~ 401 (470)
+|+++.++|+.++++++.+++++++++++++|+++..++| +.+.++|+.|+|+++++..+.. ......+.+.
T Consensus 331 a~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~ 410 (456)
T 4atq_A 331 ACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAA 410 (456)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764 4688999999999999965432 2246678999
Q ss_pred HHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 402 MKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|+++||++.+++ ++.|||.||+++|+++|++++++|+++|+
T Consensus 411 ~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~ 453 (456)
T 4atq_A 411 CLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIK 453 (456)
T ss_dssp HHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 999999987653 68999999999999999999999999997
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-68 Score=540.06 Aligned_cols=400 Identities=27% Similarity=0.414 Sum_probs=346.7
Q ss_pred hHHHHHHHhhhcccCCCC-------CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYHP-------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
.+.+.+++++|.+|.|.+ .|++++||+|+|+||.|||+|||+.++++++++||+||+|.+++.+|++++.+..
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~ 103 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH 103 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence 345778888999998764 3899999999999999999999999999999999999999999999999987543
Q ss_pred C--CCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 R--AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 ~--~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. ...++...+|+++|.+..+ .++|+|+|||+||++.|+|+++.|+. .+|. +++.+||++.++|||++.++++++
T Consensus 104 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~-~~g~-~~r~~ii~~~~~yHG~t~~a~s~t 181 (473)
T 4e3q_A 104 AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHA-AEGK-PQKRKILTRWNAYHGVTAVSASMT 181 (473)
T ss_dssp CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHHHS
T ss_pred ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHH-hcCC-CCcceEEEeeceECCCcccccccc
Confidence 3 2246677899999999884 67999999999999999999987532 2222 467799999999999999999999
Q ss_pred CCcccccCCCCCCCCeeeecCCC------------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d------------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
+.+ ++..|.+..++...++.++ .+++++.+.+.+ +++++||+||+++.+|.+.|+++|++
T Consensus 182 g~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~ 260 (473)
T 4e3q_A 182 GKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQ 260 (473)
T ss_dssp CCG-GGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred ccc-cccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHH
Confidence 864 5556666667766655432 345677776543 57999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC-------cCCcc
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ-------PGEHG 321 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~-------~~~~~ 321 (470)
+|+++|++||++||+||||+||||+|++|+++++++.||+++++|+++||++|+|++++++++++.+. ...|+
T Consensus 261 ~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg 340 (473)
T 4e3q_A 261 AILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 340 (473)
T ss_dssp HHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999669999999999988763 45789
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------ch
Q 012138 322 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PV 393 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~ 393 (470)
+||++||++|++++++|+.++++++.+++++++++|+++|+++... | .+.++++.|+|+++++..+.. ..
T Consensus 341 ~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~-~-~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~ 418 (473)
T 4e3q_A 341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER-P-NIGEYRGIGFMWALEAVKDKASKTPFDGNLS 418 (473)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTS-T-TEEEEEEETTEEEEEECSBTTTTBCCCGGGC
T ss_pred CCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcC-C-CeeEEeecceEEEEEEecCccccccccccHH
Confidence 9999999999999999999999999999999999999999998654 3 689999999999999854431 12
Q ss_pred hHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 394 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
....+.+.|+++||++.+. ++.+||+||+++|++|+++++++|+++|+ ++
T Consensus 419 ~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~al~-~v 468 (473)
T 4e3q_A 419 VSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKALD-KV 468 (473)
T ss_dssp HHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 3567999999999999887 47999999999999999999999999998 64
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-65 Score=510.80 Aligned_cols=386 Identities=23% Similarity=0.334 Sum_probs=338.5
Q ss_pred CCchHHHHHHHhhhccc-------CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc
Q 012138 36 SSSSQQLINLEYEYSAH-------NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 108 (470)
.+.|++++++.++++.. .|.|+|+++++++|+|+||.|||+||||.+++++.++||+||+|++|+.+++++..
T Consensus 41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~ 120 (454)
T 4ao9_A 41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI 120 (454)
T ss_dssp CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence 46789999999998742 37789999999999999999999999999999999999999999999999998765
Q ss_pred ccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 109 LSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
... .++....+++++|++.+ +.++++|+|||+||++.|+++++.++ ++++||.++++|||++......+
T Consensus 121 ~~~--~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~t--------gr~~ii~~~~~yHG~t~~~~~~~ 190 (454)
T 4ao9_A 121 NLT--GHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFT--------GRRKIVVFSGGYHGGVLGFGARP 190 (454)
T ss_dssp CCC--SEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH--------TCCEEEEETTCBCSTTCBBSSSB
T ss_pred Ccc--CCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcc--------cCCeEEEEeCCcCCccccccccc
Confidence 432 35667889999999987 68999999999999999999999863 67799999999999998876655
Q ss_pred CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
..... ..+...+||||++++++.++++++++++||+||+++++|.+.|+++||++|+++|++||++||+||||
T Consensus 191 ~~~~~-------~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~ 263 (454)
T 4ao9_A 191 SPTTV-------PFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVM 263 (454)
T ss_dssp CTTSC-------CSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred cCccC-------CCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCC
Confidence 43211 12357889999999999999887789999999999999999999999999999999999999999999
Q ss_pred cCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHHhh
Q 012138 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRD 343 (470)
Q Consensus 268 ~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~~~ 343 (470)
+ ||+|.+++++++|+.||+++++|+++||+ |+|++++++++++.+.+. .+++||++||++|++++++|+.+++
T Consensus 264 t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~-Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~ 340 (454)
T 4ao9_A 264 T--SRLAPHGLANKLGIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT 340 (454)
T ss_dssp G--GGGSTTCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC
T ss_pred c--CCCccccchhccCCCCcEEEeccccCCCC-cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc
Confidence 9 59999999999999999999999999998 999999999999998653 5889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHcCceeccCC
Q 012138 344 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 344 ~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
+++.+++++++++|+++|+++..++| .+..+++.|+|+.+++..... ......+...|+++||++.|.+
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~ 419 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEG-VAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-BSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCC-CCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC
Confidence 99999999999999999999988876 788999999999998854321 1223567788999999998764
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++.++..+|++|||+++++|+++|. ++..
T Consensus 420 ----~~~~s~~~T~~dId~~l~al~~~l~-~~~a 448 (454)
T 4ao9_A 420 ----FVVLSLPLTDADIDRYVAAIGSFIG-GHGA 448 (454)
T ss_dssp ----EEECCTTCCHHHHHHHHHHHHHHHH-HSGG
T ss_pred ----CEEEeCCCCHHHHHHHHHHHHHHHH-hccc
Confidence 3445677999999999999999998 7643
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-61 Score=492.38 Aligned_cols=402 Identities=22% Similarity=0.359 Sum_probs=349.2
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
..++.+.++++.++.+. ..|+++++++|+++||.+|++||||+++++++++||+||+|++++.++++++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~ 90 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS 90 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC
T ss_pred chHHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc
Confidence 34567777888887653 25899999999999999999999999999999999999999999999999977654
Q ss_pred C-CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 112 R-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 112 ~-~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
. .+.++.+.+++++|++++ +.++|+|++||+||++.|+++++.+. +.+|. +++..||+++++|||++..++++++
T Consensus 91 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~-~~~g~-~~~~~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 91 PWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYN-NVLGR-PQKKRIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp TTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHH-HHTTC-TTCCEEEEETTCCCCSSHHHHHTCC
T ss_pred cCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcCC-CCCCEEEEEcCCcCcCChhhccccC
Confidence 4 567788999999999998 57899999999999999999998752 33332 3566899999999999999999999
Q ss_pred CcccccCCCCCCCCeeeecCCC----------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d----------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
.+.++..|.+..+++..++++. +++||+++++.+ +++++|++||++|++|.+.++++||++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~ 248 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFK 248 (476)
T ss_dssp CGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHH
T ss_pred ChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHH
Confidence 8888888888877766665332 789999997543 47899999999999999888999999999
Q ss_pred HHHHhcCcEEEEeccccCCcccCCccccc-cCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC-------CccC
Q 012138 252 DLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG-------EHGS 322 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~~G~~~~~~-~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~-------~~~~ 322 (470)
++|++||++||+||||+||||+|++++++ ++++.||+++|||++++| + |+|++++++++++.+.+. .+++
T Consensus 249 ~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~-plg~v~~~~~i~~~~~~~~~~~~~~~~~~ 327 (476)
T 3i5t_A 249 AICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV-PLGGLAISEAVLARISGENAKGSWFTNGY 327 (476)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSS-CCEEEEECHHHHHTTSGGGCTTCEECCCC
T ss_pred HHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCc-CeEEEEECHHHHHHHhcCCcccccccccC
Confidence 99999999999999999999999988888 999999999999999999 6 999999999999998764 6789
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-c-------hh
Q 012138 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-P-------VS 394 (470)
Q Consensus 323 t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-~-------~~ 394 (470)
||++||++++++.++|+.++++++.++++++++++++.|+++. .+| .+..+++.|+|+++++..+.. . ..
T Consensus 328 t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~ 405 (476)
T 3i5t_A 328 TYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DLP-GVAETRSVGLVGCVQCLLDPTRADGTAEDKAF 405 (476)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TST-TEEEEEEETTEEEEEECCC-----CCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCC-CeEEEEecCceeEEEEecCccccccccchhHH
Confidence 9999999999999999999888899999999999999998764 454 788999999999998865321 0 02
Q ss_pred HHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 395 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 395 ~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
...+++.|+++||++.+.+ +++||+||+.+|+++|++++++|+++++ ++.+
T Consensus 406 ~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~-~~~~ 456 (476)
T 3i5t_A 406 TLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAIT-EVSA 456 (476)
T ss_dssp HHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence 5678899999999999875 8999999999999999999999999998 7654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-61 Score=492.79 Aligned_cols=401 Identities=27% Similarity=0.429 Sum_probs=345.9
Q ss_pred CchHHHHHHHhhhcccCCCCC------ceEEEeecCCEEEeC-CCC--eEEeccCCcccccCCCCCHHHHHHHHHHHHHc
Q 012138 37 SSSQQLINLEYEYSAHNYHPV------PIVFSQAKGSSIWDP-EGN--KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~g~~~~d~-~G~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 107 (470)
.+++++++.++++.++.|.++ |+++++++|+++||. ||+ +||||.++++.+++||+||+|.+++.++++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~ 107 (457)
T 3tfu_A 28 LTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVM 107 (457)
T ss_dssp CCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhc
Confidence 457889999999999998875 899999999999999 999 99999999999999999999999999999987
Q ss_pred cccC-CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh
Q 012138 108 TLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 108 ~~~~-~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~ 184 (470)
.+.+ ..+.++...+++++|++++ +.++|+|++||+||++.|+++++.+++.. + .++++.||+++++|||++..++
T Consensus 108 ~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~-g-~~g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 108 NHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGR-G-LPGKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp SCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHT-T-CTTCCEEEEETTCCCCSSHHHH
T ss_pred cCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhc-C-CCCCceEEEEcCCcCCccHHhh
Confidence 7654 3456778899999999998 46799999999999999999998753322 2 1356799999999999999999
Q ss_pred cccC-CcccccCCCCCCCCeeeecC-------CCHHHHHHHHHhcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHH
Q 012138 185 SMSC-DNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCS 255 (470)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~Le~~l~~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~ 255 (470)
+++. .+.++..|.+..++...+++ +|+++|+++++++++++++|++|| ++|++|.+.|+++++++|+++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 8854 45566667777666666665 478999999986545899999999 99999999999999999999999
Q ss_pred hcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC---cC--CccCCCCCCHHH
Q 012138 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PG--EHGSTFGGNPLA 330 (470)
Q Consensus 256 ~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~---~~--~~~~t~~~~~~~ 330 (470)
+||++||+||+|+|||++|.+++++++++.||++||||+++||+.|+|++++++++++.+. .. .+++||++|+++
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a 345 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLA 345 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence 9999999999999999999999889999999999999999999559999999999999883 33 678999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec
Q 012138 331 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 410 (470)
Q Consensus 331 ~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 410 (470)
++++.++|+.++++++.++++++++++++.|+++. .+| .+..+++.|+|+++++..+. +..++++.|+++||++.
T Consensus 346 ~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~v~~vr~~G~~~~i~l~~~~---~~~~~~~~l~~~Gv~v~ 420 (457)
T 3tfu_A 346 CAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALP-AVTDVRVCGAIGVIECDRPV---DLAVATPAALDRGVWLR 420 (457)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GST-TEEEEEECSSCEEEEESSCC---CHHHHHHHHHHTTEECC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCC-CeeeeecCCeEEEEEECCcc---cHHHHHHHHHHCCeEEE
Confidence 99999999999888899999999999999998875 454 67889999999999887643 57889999999999998
Q ss_pred cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 411 PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 411 ~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|. ++++||+||+.+|+|++++++++|+++++ ++.
T Consensus 421 ~~-~~~lRi~p~~~~t~eei~~~l~~L~~~l~-~~~ 454 (457)
T 3tfu_A 421 PF-RNLVYAMPPYICTPAEITQITSAMVEVAR-LVG 454 (457)
T ss_dssp CB-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC-
T ss_pred ec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hhc
Confidence 86 57999999999999999999999999998 764
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-61 Score=492.13 Aligned_cols=403 Identities=23% Similarity=0.408 Sum_probs=347.6
Q ss_pred CchHHHHHHHhhhcccCCCC-------CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc
Q 012138 37 SSSQQLINLEYEYSAHNYHP-------VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 109 (470)
.+++++.+.++++.++.|.. .|+++++++|+++||.+|++||||.++++++++||+||+|++++.++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~ 89 (472)
T 3hmu_A 10 MPTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPY 89 (472)
T ss_dssp SCHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSC
T ss_pred cCHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccc
Confidence 34677888888999887653 68999999999999999999999999999999999999999999999998763
Q ss_pred cC--CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 110 SS--RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 110 ~~--~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
.+ ..+.++...+|+++|++++ +.++|+|+|||+||++.|+++++.++. .+|. ++++.||+++++|||++..+++
T Consensus 90 ~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~-~~g~-~~~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 90 YNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQ-NKGQ-PEKTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp CCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEEcCcCCCccHHhhh
Confidence 22 2356778899999999998 467899999999999999999987532 2222 3566899999999999999999
Q ss_pred ccCCcccccCCCCCCCCeeeecCC------C-----------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhH
Q 012138 186 MSCDNEAIRGFGPLLPGHLKVDFG------D-----------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~------d-----------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+++.+.++..|. ..+++..++.+ + +++|++++++.+ +++++|++||++|++|.+.|+++|+
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l 246 (472)
T 3hmu_A 168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW 246 (472)
T ss_dssp HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence 998887777777 66666666532 2 788999997543 4789999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC--cCCccCCCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ--PGEHGSTFG 325 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~--~~~~~~t~~ 325 (470)
++|+++|++||++||+||||+||||+|++++++++++.||+++|||+++||++|+|++++++++++.+. ...+++||+
T Consensus 247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence 999999999999999999999999999988889999999999999999987339999999999999883 336788999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC---------chhH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------PVSA 395 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~-~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~---------~~~~ 395 (470)
+|+++++++.++|+.++++++.++++ ++++++++.|+++.. +| .+..+++.|+|+++++..+.. ....
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~ 404 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTD-HP-LVGEAKIVGMMASIALTPNKASRAKFASEPGTIG 404 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGG-ST-TEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-CC-CeEEEEecCceEEEEEecCccccccccchhHHHH
Confidence 99999999999999998888999999 999999999987744 54 788999999999998864310 0126
Q ss_pred HHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 396 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 396 ~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
..+++.|+++||++.+++ +++||+||+.+|++++++++++|+++++ ++.
T Consensus 405 ~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~-~~~ 453 (472)
T 3hmu_A 405 YICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLD-EAQ 453 (472)
T ss_dssp HHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 788999999999999876 9999999999999999999999999987 653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-60 Score=480.90 Aligned_cols=403 Identities=52% Similarity=0.927 Sum_probs=356.6
Q ss_pred CCCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC
Q 012138 34 PSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113 (470)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~ 113 (470)
+...+++++++.+.++..+.|.++|+++++++|+++||.+|++||||.++++..++||+||+|.+++.++++++.+.+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~ 114 (439)
T 2oat_A 35 QGPPTSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRA 114 (439)
T ss_dssp -CCCCHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTT
T ss_pred CCCCCHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCc
Confidence 33456888999888898888888899999999999999999999999999998999999999999999999887655444
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+..+...+++++|+++++.+++++++||++|++.++++++.|+++.+|.++|++.||+++++|||++..++.+++.+.++
T Consensus 115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 56778999999999999999999999999999999999987665655555565689999999999999888887766666
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..|.|..+++..+|++|+++|+++++. +++++|++||++|++|.+.++++++++|+++|++||++||+||+|+||+++
T Consensus 195 ~~~~p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~ 272 (439)
T 2oat_A 195 DGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART 272 (439)
T ss_dssp TTSCSCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred cCCCCCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence 777888788889999999999999953 379999999999999998879999999999999999999999999999999
Q ss_pred CCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 352 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 352 (470)
|.+++++++++.||+++|||++++| + |+|++++++++++.+....++++|++|+++++++.++|+.++++++.+++++
T Consensus 273 g~~~~~~~~~~~~Di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 351 (439)
T 2oat_A 273 GRWLAVDYENVRPDIVLLGKALSGGLY-PVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK 351 (439)
T ss_dssp SSSSGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CcchhHHHhCCCCcEEEecccccCCCC-CeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9988888899999999999999999 6 9999999999999998777889999999999999999999887889999999
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHH
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~ 432 (470)
+++++++.|+++. +| .+..+++.|.++++++.... ..+..++++.|+++||++.|.+++++||+|++.+|++++++
T Consensus 352 ~~~~l~~~L~~l~--~~-~~~~~~~~g~~~~v~l~~~~-~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~ 427 (439)
T 2oat_A 352 LGIILRNELMKLP--SD-VVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRE 427 (439)
T ss_dssp HHHHHHHHHTTSC--TT-TEEEEEEETTEEEEEECCCS-SCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhc--CC-CcEEEEeeeeEEEEEEecCc-cHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHH
Confidence 9999999998762 43 56677899999999886431 01477899999999999999878999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 012138 433 GSKALHDVLELD 444 (470)
Q Consensus 433 ~~~~l~~~l~~~ 444 (470)
++++|+++++ +
T Consensus 428 ~l~~l~~~l~-~ 438 (439)
T 2oat_A 428 SIEIINKTIL-S 438 (439)
T ss_dssp HHHHHHHHHH-T
T ss_pred HHHHHHHHHH-h
Confidence 9999999987 5
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-60 Score=480.07 Aligned_cols=403 Identities=47% Similarity=0.854 Sum_probs=336.0
Q ss_pred CchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC
Q 012138 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 116 (470)
.+++++++..+++..+.|.++|+++++++|+++||.+|++||||.++++..++||+||++.+++.++++++.+.+..+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~ 106 (433)
T 1z7d_A 27 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS 106 (433)
T ss_dssp CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred ccHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCC
Confidence 45788889888888888888899999999999999999999999999888999999999999999999887654444556
Q ss_pred CcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+...+++++|+++++.++++|++||++|++.++++++.++++.+|.++|++.||+++++|||++..++.+++.+.++..|
T Consensus 107 ~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 67899999999999999999999999999999999887655555555665689999999999998888777765556667
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.|..+++..+|++|+++|+++++. +++++|++||++|++|.+.++++++++|+++|++||++||+||+|+||+++|.+
T Consensus 187 ~p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~ 264 (433)
T 1z7d_A 187 GPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 264 (433)
T ss_dssp -----CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcc
Confidence 777777888999999999999952 379999999999999998779999999999999999999999999999999998
Q ss_pred cccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 355 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~ 355 (470)
++++.+++.||+++|||++++| + |+|++++++++++.+.+..++.+|++|+++++++.++|+.++++++.++++++++
T Consensus 265 ~~~~~~~~~~di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 343 (433)
T 1z7d_A 265 LCVHHYNVKPDVILLGKALSGGHY-PISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGG 343 (433)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhHhcCCCCCEEEECccccCCCC-CeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888889999999999999999 6 9999999999999998777889999999999999999999887789999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
++++.|+++...+| .+..+++.|.++++++.... .+..++++.|+++||++.+++.+++|++|++.+|+++++++++
T Consensus 344 ~l~~~L~~l~~~~~-~~~~~~~~g~~~~i~~~~~~--~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~ 420 (433)
T 1z7d_A 344 PFLENLKRELKDSK-IVRDVRGKGLLCAIEFKNEL--VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTE 420 (433)
T ss_dssp HHHHHHHHHHTTCT-TEEEEEEETTEEEEEECTTT--CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CeEEEEeeeeEEEEEEccCh--hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHH
Confidence 99999998865564 56778899999999886431 1477899999999999998778899999999999999999999
Q ss_pred HHHHHHhcccC
Q 012138 436 ALHDVLELDLP 446 (470)
Q Consensus 436 ~l~~~l~~~~~ 446 (470)
+|+++++ ++.
T Consensus 421 ~l~~~l~-~~~ 430 (433)
T 1z7d_A 421 IIVKTVK-FFD 430 (433)
T ss_dssp HHHHHHH-HHC
T ss_pred HHHHHHH-HHH
Confidence 9999998 653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-60 Score=482.72 Aligned_cols=401 Identities=30% Similarity=0.522 Sum_probs=351.9
Q ss_pred CCCCCCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 110 (470)
+..+.+++++++++.+++..+.+. +.|+++++++|+++||.+|++||||.++++.+++||+||+|++++.++++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~ 96 (451)
T 3oks_A 17 TAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHT 96 (451)
T ss_dssp SCSSCHHHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCC
T ss_pred cCCCCCcHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccc
Confidence 345567789999999999888765 7899999999999999999999999999999999999999999999999887654
Q ss_pred C-CCCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 111 S-RAFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 111 ~-~~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
. ..+.++.+.+++++|++.++ .++|+|++||+||++.|+++++.+ ++++.||+++++|||++..++++
T Consensus 97 ~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~--------~g~~~ii~~~~~yhG~~~~~~~~ 168 (451)
T 3oks_A 97 CFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH--------THKPAVVAFDHAYHGRTNLTMAL 168 (451)
T ss_dssp TTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSHHHHHH
T ss_pred cCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh--------cCCCeEEEEcCCcCCccHHHHHh
Confidence 3 23567778999999999884 478999999999999999999875 36679999999999999999999
Q ss_pred cCCc-ccccCCCCCCCCeeeecCC------------------CHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChh
Q 012138 187 SCDN-EAIRGFGPLLPGHLKVDFG------------------DITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~~~~~~------------------d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
++.. .++..|.+..+++..++++ +++.+++.+++. ++++++|++||+++++|.+.++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~ 248 (451)
T 3oks_A 169 TAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADG 248 (451)
T ss_dssp CCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTT
T ss_pred cCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHH
Confidence 8864 6777788887787777776 244444555531 247899999999999999999999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCC
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG 325 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~ 325 (470)
|+++|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.+..+++||+
T Consensus 249 ~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~-~iG~v~~~~~~~~~~~~~~~~~t~~ 327 (451)
T 3oks_A 249 FLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSPHVSGLGGTYG 327 (451)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTCSCTTSBCCSSS
T ss_pred HHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCc-ceEEEEECHHHHhhhcCCCcCCCCC
Confidence 999999999999999999999999999999888999999999999999999998 9999999999999998888999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----CchhHHHHHHH
Q 012138 326 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----LPVSAYDICLK 401 (470)
Q Consensus 326 ~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~ 401 (470)
+|+++++++.++|+.++++++.++++++++++++.|+++...+| .+..+++.|+|+++++.... ......++++.
T Consensus 328 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (451)
T 3oks_A 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD-RIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAG 406 (451)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHH
Confidence 99999999999999988888999999999999999999877776 78889999999999885311 02356789999
Q ss_pred HHHcCceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 402 MKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|+++||++.|++. +++||+|++.+|+++|++++++|+++++
T Consensus 407 l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 407 AHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp HHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999988654 8999999999999999999999999987
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-60 Score=481.62 Aligned_cols=401 Identities=30% Similarity=0.502 Sum_probs=351.2
Q ss_pred CCCCCchHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 33 SPSSSSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
..+.+++++++++.++++.+.+. +.|+++++++|+++||.+|++||||.++++.+++||+||+|++++.++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~ 100 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC 100 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT
T ss_pred CCCCCCHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccc
Confidence 34556788999999999888764 78999999999999999999999999999999999999999999999999876543
Q ss_pred -CCCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 -RAFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 -~~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
..+..+.+.+++++|+++++ .++|+|+|||+||++.|+++++.+ ++++.||+++++|||++..+++++
T Consensus 101 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~--------~g~~~ii~~~~~yhg~~~~~~~~~ 172 (453)
T 4ffc_A 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA--------TGRPAVVAFDNAYHGRTNLTMALT 172 (453)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSHHHHHHC
T ss_pred cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh--------cCCCEEEEEcCccCCcchHHHhhc
Confidence 23567778999999999985 478999999999999999999875 366799999999999999999998
Q ss_pred CCc-ccccCCCCCCCCeeeecCC----C-------------HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDN-EAIRGFGPLLPGHLKVDFG----D-------------ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~~~~~~----d-------------~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+.. .++..|.+..+++..++++ | +++|++.+.. +++++|++||+++++|.+.++++|+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~--~~~aavi~ep~~~~gG~~~~~~~~l~~ 250 (453)
T 4ffc_A 173 AKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA--QSLAAIIIEPIQGEGGFIVPAPGFLAT 250 (453)
T ss_dssp CCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG--GGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred CCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC--CCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence 865 6777788877777777665 4 2344444422 378999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHH
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~ 329 (470)
|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.+..+++||++|++
T Consensus 251 l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~i~~~~~~~~~~~t~~~~~~ 329 (453)
T 4ffc_A 251 LTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGM-PLSAVTGRAELMDAVYAGGLGGTYGGNPV 329 (453)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTSCTTSSCCSSSSCHH
T ss_pred HHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCc-CeEEEEECHHHHhhhcccCcCCCCCcCHH
Confidence 99999999999999999999999999888899999999999999999998 99999999999999988889999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----CchhHHHHHHHHHHc
Q 012138 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----LPVSAYDICLKMKER 405 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~l~~~ 405 (470)
+++++.++|+.++++++.++++++++++++.|+++...+| .+..+++.|+|+++++.... ......++++.|+++
T Consensus 330 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (453)
T 4ffc_A 330 TCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVD-IIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQ 408 (453)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS-SEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhC
Confidence 9999999999988888999999999999999999887776 78889999999999885411 023577899999999
Q ss_pred CceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 406 GILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 406 Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
||++.|++. +++||+|++.+|++++++++++|+++++ ++.
T Consensus 409 Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~ 450 (453)
T 4ffc_A 409 GVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIR-AKA 450 (453)
T ss_dssp TEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHC
T ss_pred CCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 999988754 8999999999999999999999999998 764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=471.57 Aligned_cols=403 Identities=24% Similarity=0.397 Sum_probs=345.3
Q ss_pred HHHHHHHhhhcccCCC---------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc
Q 012138 40 QQLINLEYEYSAHNYH---------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS 110 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~---------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 110 (470)
+++.+.++++.++.|. +.|+++++++|+++||.+|++||||+++++.+++||+||+|.+++.++++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~ 86 (460)
T 3gju_A 7 NELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYY 86 (460)
T ss_dssp SCHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 3467777888887653 3459999999999999999999999999988999999999999999999886632
Q ss_pred C--CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 111 S--RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 111 ~--~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
+ ..+.++.+.+++++|++++ +.++|+|++||++|++.|+++++.++.. +|. ++++.||+++++|||++..++++
T Consensus 87 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~-~g~-~~~~~vi~~~~~yhg~~~~~~~~ 164 (460)
T 3gju_A 87 HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNV-LGR-PEKKKIISRWRGYHGSGVMTGSL 164 (460)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHH-TTC-TTCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHh-cCC-CCCCEEEEECCCcCCCCHHHhhc
Confidence 2 2345677899999999987 5678999999999999999999875321 222 35669999999999999999999
Q ss_pred cCCcccccCCCCCCCCeeeec--C----CC------------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhH
Q 012138 187 SCDNEAIRGFGPLLPGHLKVD--F----GD------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~--~----~d------------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
++.+.++..|.+..+++..++ + +| +++||+++++.+ +++++|++||++|++|.+.++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l 244 (460)
T 3gju_A 165 TGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYW 244 (460)
T ss_dssp CCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred cCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHH
Confidence 988888888888777766555 2 33 689999997532 3789999999999999988899999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhc-------CcCCc
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI-------QPGEH 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~-------~~~~~ 320 (470)
++|+++|++||++||+||||+|||++|+.++++++++.||+++|||+++||+.|+|++++++++++.+ ....+
T Consensus 245 ~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~ 324 (460)
T 3gju_A 245 EKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGH 324 (460)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSC
T ss_pred HHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhccccccccccc
Confidence 99999999999999999999999999998888899999999999999999833999999999999988 34478
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--------c
Q 012138 321 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------P 392 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~ 392 (470)
++||++|+++++++.++|+.++++++.++++++.+++++.|.+....+| .+..+++.|.++++++..+.. .
T Consensus 325 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 403 (460)
T 3gju_A 325 GWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHK-NVGEVRGDGMLAAVEFVADKDDRVFFDASQ 403 (460)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEETTEEEEEECSBTTTTBCCCGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEeeeeEEEEEEEccCccccccccchH
Confidence 8999999999999999999998888999999999999999987766665 788899999999998864320 0
Q ss_pred hhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 393 VSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 393 ~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
....++++.|+++||++.+++ .+++||+||+.+|++++++++++|+++++ ++.
T Consensus 404 ~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~ 457 (460)
T 3gju_A 404 KIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK-SVF 457 (460)
T ss_dssp CHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 126688999999999998875 48999999999999999999999999998 653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=471.35 Aligned_cols=403 Identities=27% Similarity=0.471 Sum_probs=322.3
Q ss_pred HHHHHHHhhhcccCCC------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-C
Q 012138 40 QQLINLEYEYSAHNYH------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-R 112 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~ 112 (470)
+++.+.+++|.++.+. +.|+++++++|+++||.+|++||||.+++++.++||+||+|.+++.+++++..+++ .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 82 (448)
T 3dod_A 3 HDLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82 (448)
T ss_dssp CHHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS
T ss_pred hHHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc
Confidence 4677888888887654 35899999999999999999999999999999999999999999999998875532 3
Q ss_pred CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 113 AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
.+.++...+++++|++++ +.++|+|++||++|++.|+++++.+... .|. ++++.||+++++|||.+..++++++.+
T Consensus 83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~-~G~-~~~~~vi~~~~~yhg~~~~~~~~~~~~ 160 (448)
T 3dod_A 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKN-IGK-PEKQKFIAMKNGYHGDTIGAVSVGSIE 160 (448)
T ss_dssp SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHH-TTC-TTCCEEEEEC-----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHh-hCC-CCCCEEEEECCCCCCccHHHHHhcCCc
Confidence 455677899999999988 4679999999999999999999874211 111 125699999999999999999998877
Q ss_pred ccccCCCCCCCCeeeecCCC----------------HHHHHHHHHhcCCCeEEEEEcccc-CCCccccCChhhHHHHHHH
Q 012138 191 EAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESGDQIAGFLFEPIQ-GEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d----------------~~~Le~~l~~~~~~~~~vi~epi~-n~~G~~~~~~~~l~~l~~l 253 (470)
.++..|.+..+++..+++++ +++||++++++++++++|++||++ |++|.+.++++++++|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l 240 (448)
T 3dod_A 161 LFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVREL 240 (448)
T ss_dssp ------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred cccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence 77777777777777776654 899999998444479999999998 9999998899999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-------CCccCCCCC
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTFGG 326 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-------~~~~~t~~~ 326 (470)
|++||++||+||+|+|||++|..++++++++.||+++|||++++|++|+|++++++++++.+.. ..+++||++
T Consensus 241 ~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 320 (448)
T 3dod_A 241 CTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG 320 (448)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred HHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence 9999999999999999999999888899999999999999999994499999999999999876 668899999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCc------h--hHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP------V--SAYDI 398 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~------~--~~~~~ 398 (470)
++++++++.++|+.++++++.++++++++++++.|++ ...+| .+..+++.|.++++++..+... . .+.++
T Consensus 321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (448)
T 3dod_A 321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALP-HVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKV 398 (448)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTST-TEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCC-CeEEEEeeeEEEEEEEccCcccccccchhhHHHHHH
Confidence 9999999999999988888999999999999999988 44554 6788899999999988643210 0 14789
Q ss_pred HHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 399 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
++.|+++||++.|++ +++||+|++.+|+++|++++++|+++++ ++..+
T Consensus 399 ~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~~ 446 (448)
T 3dod_A 399 SLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIH-EVTSL 446 (448)
T ss_dssp HHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhcc
Confidence 999999999999874 8999999999999999999999999998 76543
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-58 Score=465.63 Aligned_cols=401 Identities=28% Similarity=0.475 Sum_probs=344.5
Q ss_pred chHHHHHHHhhhccc---CC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC
Q 012138 38 SSQQLINLEYEYSAH---NY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA 113 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~---~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~ 113 (470)
+++++.+.+++|.++ .| .+.|+++++++|+++||.+|++||||.++++.+++||+||+|.+++.++++++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~ 87 (452)
T 3n5m_A 8 QTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS 87 (452)
T ss_dssp HHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTT
T ss_pred cHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccc
Confidence 467788889999888 44 35799999999999999999999999999999999999999999999999887663334
Q ss_pred CCCCcHHHHHHHHhhhhCCC-eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 114 FYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~-~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
+.++.+.+++++|++.++.+ .|+|++||+||++.|+++++.++.. ++. ++++.||+++++|||.+..++.+++.+.+
T Consensus 88 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~-~g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 165 (452)
T 3n5m_A 88 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQ-KGE-PHRYKFMSRYRGYHGNTMATMAATGQAQR 165 (452)
T ss_dssp SEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHT-TTC-TTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred cCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHh-cCC-CCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence 56677899999999988532 3999999999999999999864211 111 24568999999999999999999988777
Q ss_pred ccCCCCCCCCeeeec--------CCC---------HHHHHHHHH-hcCCCeEEEEEccc-cCCCccccCChhhHHHHHHH
Q 012138 193 IRGFGPLLPGHLKVD--------FGD---------ITALEKIFK-ESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~--------~~d---------~~~Le~~l~-~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l 253 (470)
+..+.+..+++..++ ++| +++||++++ .+++++++|++||+ +| +|.++|+++++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l 244 (452)
T 3n5m_A 166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET 244 (452)
T ss_dssp TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence 777777766655554 355 899999998 22247999999998 89 99999899999999999
Q ss_pred HHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCc------CCccCCCCC
Q 012138 254 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQP------GEHGSTFGG 326 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~------~~~~~t~~~ 326 (470)
|++||++||+||||+|||++|.+++++++++.||+++|||++++| + |+|++++++++++.+.. ..+++||++
T Consensus 245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~-~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~ 323 (452)
T 3n5m_A 245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYL-PLSATAVKREIYEAFKGKGEYEFFRHINTFGG 323 (452)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTT
T ss_pred HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCc-ceEEEEECHHHHHHHhhccCCCCccccCCCCC
Confidence 999999999999999999999988899999999999999999999 6 99999999999998843 247789999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------chhHHHHHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------PVSAYDICL 400 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~ 400 (470)
|+++++++.++|+.++++++.++++++++++++.|+++...+| .+..+++.|.++++++..+.. .....++++
T Consensus 324 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~ 402 (452)
T 3n5m_A 324 NPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVN 402 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHH
Confidence 9999999999999988888999999999999999999877775 788899999999998743210 012457899
Q ss_pred HHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 401 KMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 401 ~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
.|+++||++.|++ ++++||+|++.+|+++|++++++|+++++ +
T Consensus 403 ~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~ 451 (452)
T 3n5m_A 403 ACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME-R 451 (452)
T ss_dssp HHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-h
Confidence 9999999998876 68999999999999999999999999987 5
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=472.51 Aligned_cols=402 Identities=25% Similarity=0.423 Sum_probs=328.7
Q ss_pred hHHHHHHHhhhcccCCC-------CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 39 SQQLINLEYEYSAHNYH-------PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-------~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
+.++.+.++++.++.+. ..|+++++++|+++||.+|++||||+++++.+++||+||+|.+++.++++++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 86 (459)
T 4a6r_A 7 TSQWRELDAAHHLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYN 86 (459)
T ss_dssp ---------------------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHhhhhccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccc
Confidence 45667777777777653 25899999999999999999999999999999999999999999999999876322
Q ss_pred --CCCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 112 --RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 112 --~~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
..+.++.+.+++++|++++ +.++|+|++||++|++.|+++++.++. .+|. ++++.||+++++|||.+..+.+++
T Consensus 87 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~-~~g~-~~~~~vi~~~~~yhg~~~~~~~~~ 164 (459)
T 4a6r_A 87 TFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWD-VQGK-PEKKTLIGRWNGYHGSTIGGASLG 164 (459)
T ss_dssp TTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHHHS
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEECCCcCCccHHHHhhc
Confidence 2456778899999999988 468999999999999999999987532 2222 355699999999999999999999
Q ss_pred CCcccccCCCCCCCCeeeecCC---------C--------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHH
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFG---------D--------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~---------d--------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+.+.++..|.+..+++..++.+ | +++||+++++.+ +++++|++||+++++|.+.++++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~ 244 (459)
T 4a6r_A 165 GMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPE 244 (459)
T ss_dssp CCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHH
T ss_pred CChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHH
Confidence 8888877788877776666532 2 789999997533 478999999999999999989999999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC---cCCccCCCCC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PGEHGSTFGG 326 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~---~~~~~~t~~~ 326 (470)
|+++|++||++||+||||+|||++|.+++++++++.||+++|||+++||+.|+|++++++++++.+. ...+++||++
T Consensus 245 l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~ 324 (459)
T 4a6r_A 245 IERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSG 324 (459)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCS
T ss_pred HHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCC
Confidence 9999999999999999999999999988888899999999999999987339999999999999886 5567889999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHH-HHHHhhCCCceEEEeccceeEEEEeccCCC--------chhHH
Q 012138 327 NPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHL-FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--------PVSAY 396 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~~~~~~~~~-~~~~~l~~~L-~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--------~~~~~ 396 (470)
|+++++++.++|+.++++++.++++ ++++++++.| +.+ ..+| .+..+++.|+|+++++..+.. .....
T Consensus 325 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (459)
T 4a6r_A 325 HPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETF-SRFE-HVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGT 402 (459)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHH-TTCT-TEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-hcCC-CeEEEEEEEEEEEEEEecCccccccccchHHHHH
Confidence 9999999999999988888999999 9999999999 555 4454 788899999999998864320 11267
Q ss_pred HHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 397 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++++.|+++||++.+++ +++||+||+.+|++++++++++|+++++ ++.
T Consensus 403 ~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~ 450 (459)
T 4a6r_A 403 LCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLE-EFE 450 (459)
T ss_dssp HHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 89999999999999875 8999999999999999999999999998 654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-57 Score=453.22 Aligned_cols=387 Identities=31% Similarity=0.552 Sum_probs=347.6
Q ss_pred HHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHH
Q 012138 45 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAE 124 (470)
Q Consensus 45 ~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (470)
.+.+|..+.|.+.|+++++++|+++||.+|++||||.++++.+++||+||++.+++.++++...+.+..+..+.+.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (395)
T 3nx3_A 6 KEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAK 85 (395)
T ss_dssp --CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHH
T ss_pred hhhhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHH
Confidence 34567777788899999999999999999999999999999999999999999999999988776555566788899999
Q ss_pred HHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCee
Q 012138 125 RLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 204 (470)
Q Consensus 125 ~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (470)
+++++++.+++++++||++|++.++++++.+. +.+| ++++.||+++++|||.+..+..+++.+.++..+.+...++.
T Consensus 86 ~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (395)
T 3nx3_A 86 NLAKASALERVFFTNSGTESIEGAMKTARKYA-FNKG--VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVK 162 (395)
T ss_dssp HHHHHHTCSEEEEESSHHHHHHHHHHHHHHHH-HHTT--CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEE
T ss_pred HHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHh-hccC--CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcE
Confidence 99999999999999999999999999887642 1122 24568999999999999999998887777777778778889
Q ss_pred eecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC
Q 012138 205 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 205 ~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
.++++|+++|++++++ ++++|+++|++|++|.+.++++++++|.++|++||++||+||+|+|||++|..++.+++++
T Consensus 163 ~~~~~d~~~l~~~l~~---~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~ 239 (395)
T 3nx3_A 163 FAKYNDISSVEKLVNE---KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI 239 (395)
T ss_dssp EECTTCHHHHHTTCCT---TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred EeCCCCHHHHHHhccC---CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC
Confidence 9999999999999874 7999999999999999988999999999999999999999999999999998888888999
Q ss_pred CcceeeccccccCCCcceeEEEecHHH-HhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 012138 285 RPDMVILGKALGGGVIPVSAVLADKEV-MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 285 ~pdi~s~sK~l~gG~~~ig~v~~~~~~-~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (470)
.||+++|||++++|+ |+|++++++++ ++.+.+..++.+|+.++++++++.++|+.++++++.++++++.+++++.|++
T Consensus 240 ~~d~~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~ 318 (395)
T 3nx3_A 240 LPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDE 318 (395)
T ss_dssp CCSEEEECGGGTTTS-CCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecccccCCC-ceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 99999999999 8889887788999999999999999999887788999999999999999999
Q ss_pred HHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 364 IQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 364 l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+...+| .+..+++.|.++++.+.... +..++++.|+++||++.+++.+++||+|++.+|++++++++++|+++++
T Consensus 319 ~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 319 LINEFD-FCKKRKGLGFMQGLSLDKSV---KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHCT-TEEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CeEEEEeEEEEEEEEeCCcc---hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 877775 67788899999999886543 5788999999999999998889999999999999999999999999987
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-59 Score=498.79 Aligned_cols=400 Identities=21% Similarity=0.312 Sum_probs=323.4
Q ss_pred HHHHhhhcccCCCC-------CceEEEeecCC--EEEeCCCC----eEEeccCCcccccCCCC-CHHHHHHHHHHHHHcc
Q 012138 43 INLEYEYSAHNYHP-------VPIVFSQAKGS--SIWDPEGN----KYLDFLSAYSAVNQGHC-HPKIMKALQEQAEKLT 108 (470)
Q Consensus 43 ~~~~~~~~~~~~~~-------~p~~~~~~~g~--~~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~ 108 (470)
.+.+++++||.|.. .|+++++++|. |+||.||+ +|||++++++++++||+ ||+|.+|+.+|++++.
T Consensus 335 ~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~ 414 (831)
T 4a0g_A 335 AKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFG 414 (831)
T ss_dssp HHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc
Confidence 34455677776532 37899999995 99999999 99999999999999999 9999999999999988
Q ss_pred ccCC-CCCCCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHH-HhchhcccCC-------CCCcEEEEEccCc
Q 012138 109 LSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLAR-KWGYVKKKFS-------IDEAIIVSCCGCF 176 (470)
Q Consensus 109 ~~~~-~~~~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~-~~~~~~~~~~-------~g~~~ii~~~~~y 176 (470)
+... .+.++...+|+++|+++.+ .++|+|++||+|||+.|||+++ .|+ ..+|.+ +++..||+++++|
T Consensus 415 h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~-~~~g~~~~~~~~~~~r~~iI~~~~sy 493 (831)
T 4a0g_A 415 HVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC-VDHNFCEATEEEKHIVVKVIALRGSY 493 (831)
T ss_dssp SCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHH-HTTTC---------CCEEEEEETTCC
T ss_pred cccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHH-hhcCCCccccccccCccEEEEecCCc
Confidence 7642 3567888999999999986 6799999999999999999994 443 223321 1577899999999
Q ss_pred cccccchhcccCCccccc--------CCCCCC--------CCeeee--c------------CCCH---------------
Q 012138 177 HGRTLAAISMSCDNEAIR--------GFGPLL--------PGHLKV--D------------FGDI--------------- 211 (470)
Q Consensus 177 hg~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~--~------------~~d~--------------- 211 (470)
||+|.+++++++...++. ++.++. +++..+ | |++.
T Consensus 494 HG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (831)
T 4a0g_A 494 HGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLAR 573 (831)
T ss_dssp CCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHH
T ss_pred ccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhH
Confidence 999999999998654433 111111 111111 2 2332
Q ss_pred ---HHHHHHHHh-----cCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC
Q 012138 212 ---TALEKIFKE-----SGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282 (470)
Q Consensus 212 ---~~Le~~l~~-----~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~ 282 (470)
++|+++|++ .++++++||+||+ ++.+|.+.++++|+++|+++|++||++||+||||+||||+|++|+++++
T Consensus 574 ~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~ 653 (831)
T 4a0g_A 574 IYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653 (831)
T ss_dssp HHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhc
Confidence 567777763 2457999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeccccccCCCcceeEEEecHHHHhhcCcC------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012138 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356 (470)
Q Consensus 283 ~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~ 356 (470)
++.||++||||+++||++|+|++++++++++.+... .+++||++||++|+++.++|+.++++++.+++++++++
T Consensus 654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~ 733 (831)
T 4a0g_A 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT 733 (831)
T ss_dssp SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999955999999999999988653 48899999999999999999999887777777665555
Q ss_pred HHH----HHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCH
Q 012138 357 LRQ----HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISS 427 (470)
Q Consensus 357 l~~----~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~ 427 (470)
+++ .+.+....+| .+..+++.|+|+++++..+.. ...+.++++.|+++||++.|. ++.+||+||+.+|+
T Consensus 734 l~~~l~~~l~~~l~~~~-~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-g~~lrl~pp~~~t~ 811 (831)
T 4a0g_A 734 LRELWDEELVQQISSHS-AVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-GNVIYLMCGPCTSP 811 (831)
T ss_dssp BCCCSCHHHHHHHHHST-TEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB-TTEEEEECCTTCCH
T ss_pred HHHHHHHHHHHHHhhCC-CceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-CCEEEEECCCCCCH
Confidence 432 3433334454 789999999999999864311 124678999999999999987 58999999999999
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 012138 428 NELQEGSKALHDVLELDLP 446 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~ 446 (470)
++|++++++|.++++ ++.
T Consensus 812 e~id~~~~~l~~~l~-~l~ 829 (831)
T 4a0g_A 812 EICRRLLTKLYKRLG-EFN 829 (831)
T ss_dssp HHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHHHHHH-Hhc
Confidence 999999999999998 764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-57 Score=454.62 Aligned_cols=398 Identities=32% Similarity=0.549 Sum_probs=329.7
Q ss_pred hHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCc
Q 012138 39 SQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDK 118 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 118 (470)
+.++++.+.++..+.|.+.|+++++++|+++||.+|++||||.++++..++||+||++.+++.+++++..+.+..+..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~ 100 (420)
T 2pb2_A 21 TAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEP 100 (420)
T ss_dssp ------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHH
T ss_pred HHHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHH
Confidence 34566777788888888889999999999999999999999999998899999999999999999988765444456678
Q ss_pred HHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCC
Q 012138 119 FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 198 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 198 (470)
..+++++|+++++.+++++++||++|++.++++++.+... ++. ++++.||+++++|||.+..++.+++.+.++.+|.|
T Consensus 101 ~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~-~~~-~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 178 (420)
T 2pb2_A 101 ALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACV-RHS-PFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP 178 (420)
T ss_dssp HHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHH-HTC-TTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred HHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhh-ccC-CCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence 8999999999999999999999999999999988764322 111 35558999999999999888877776656667778
Q ss_pred CCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc
Q 012138 199 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 278 (470)
Q Consensus 199 ~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~ 278 (470)
..+++..++++|+++|++++++ ++++|++||++|++|.+.++++++++|+++|++||++||+||+|+||+++|+.++
T Consensus 179 ~~~~~~~~~~~d~~~le~~i~~---~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~ 255 (420)
T 2pb2_A 179 KPADIIHVPFNDLHAVKAVMDD---HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255 (420)
T ss_dssp CCSCEEEECTTCHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH
T ss_pred CCCCeEEecCCCHHHHHHHhcc---CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH
Confidence 8788888999999999999975 8999999999999997666999999999999999999999999999999998877
Q ss_pred cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 012138 279 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 358 (470)
Q Consensus 279 ~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~ 358 (470)
++.+++.||+++|||++++|+ |+|++++++++++.+....++.+|++|+++++++.++|+.++++++.++++++++++.
T Consensus 256 ~~~~~~~~diit~sK~l~~G~-~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~ 334 (420)
T 2pb2_A 256 YMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFV 334 (420)
T ss_dssp HHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEecccccCCC-ceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777888999999999999998 9999999999999888766788999999999999999999887789999999999999
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+.|+++...+| .+..+++.|.++++++.... ..+..++++.|+++||++.+++++++||+||+.+|++++++++++|+
T Consensus 335 ~~L~~~~~~~~-~~~~~~~~g~~~~v~~~~~~-~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 335 QHLQAIDEQFD-IFSDIRGMGLLIGAELKPKY-KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HHHHHHHHHHC-CEEEEEEETTEEEEEECGGG-TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CeEEEEecceEEEEEECCCc-hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99988754454 56677889999999875421 01467899999999999998878999999999999999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ ++
T Consensus 413 ~~l~-~~ 418 (420)
T 2pb2_A 413 QAVG-KV 418 (420)
T ss_dssp HHHH-HH
T ss_pred HHHH-HH
Confidence 9987 54
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=446.34 Aligned_cols=395 Identities=27% Similarity=0.411 Sum_probs=334.4
Q ss_pred CCchHHHHHHHhhhcccCC-------C----CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHH
Q 012138 36 SSSSQQLINLEYEYSAHNY-------H----PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQA 104 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-------~----~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 104 (470)
.+++++++++.++++.... . +.|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++
T Consensus 5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~ 84 (434)
T 3l44_A 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA 84 (434)
T ss_dssp CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence 3568889999998876432 1 5799999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch
Q 012138 105 EKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 183 (470)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~ 183 (470)
++... ..+..+...++++++++.+ +.++++|++||++|++.|+++++.+ ++++.||+++++|||++..+
T Consensus 85 ~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~--------~~~~~vi~~~~~yhg~~~~~ 154 (434)
T 3l44_A 85 ENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY--------TGRTKIMKFAGCYHGHSDLV 154 (434)
T ss_dssp HHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCCSSGGG
T ss_pred HhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHh--------hCCCEEEEEcCccCCCcHHH
Confidence 87532 2355677889999999987 6789999999999999999998864 25568999999999999988
Q ss_pred hcccCCccccc--CCCCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 184 ISMSCDNEAIR--GFGPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 184 ~~~~~~~~~~~--~~~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
+..++...... +..+.. +++..+|++|+++|+++++++++++++|++||++|++|.+.|+++++++|+++|++
T Consensus 155 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 234 (434)
T 3l44_A 155 LVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHE 234 (434)
T ss_dssp GBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHT
T ss_pred HhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHH
Confidence 87766432211 111111 25678899999999999986545799999999999999999999999999999999
Q ss_pred cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHH
Q 012138 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAV 333 (470)
Q Consensus 257 ~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aa 333 (470)
||++||+||+|+|| ++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.. ..+++||++|++++++
T Consensus 235 ~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aa 312 (434)
T 3l44_A 235 AGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMAS 312 (434)
T ss_dssp TTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHH
T ss_pred cCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCc-CeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHH
Confidence 99999999999999 9998888888999999999999999998 99999999999998875 3578899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHH
Q 012138 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMK 403 (470)
Q Consensus 334 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~ 403 (470)
+.++|+.++++++.++++++++++++.|+++...++ .+..+++.|.++++++..... .....++++.|+
T Consensus 313 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 391 (434)
T 3l44_A 313 GIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHN-IDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLML 391 (434)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHH
Confidence 999999988888999999999999999999876664 567789999999998843210 123467899999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++||++.+++.+.+|++ +.+|++++++++++|+++++ +++
T Consensus 392 ~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~~l~-~~~ 431 (434)
T 3l44_A 392 QEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGRAFA-ALA 431 (434)
T ss_dssp HTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHHHHH-HHH
Confidence 99999999887888885 78999999999999999998 764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=438.97 Aligned_cols=390 Identities=51% Similarity=0.902 Sum_probs=350.3
Q ss_pred HHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHH
Q 012138 41 QLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP 120 (470)
Q Consensus 41 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 120 (470)
++++.++++..+.|.+.|+++++++|+++||.+|++||||.+++++.++||+||++.+++.++++...+.+..+..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 81 (392)
T 3ruy_A 2 DIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLG 81 (392)
T ss_dssp CHHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHH
T ss_pred hHHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999999998877665556678899
Q ss_pred HHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC
Q 012138 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL 200 (470)
Q Consensus 121 ~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 200 (470)
+++++++++++.+++++++||++|++.++++++.++++.++.+++++.|++..++|||.+..+..+++.+.++..+.+..
T Consensus 82 ~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (392)
T 3ruy_A 82 PWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPML 161 (392)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCC
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCC
Confidence 99999999999999999999999999999988775445555556677999999999999999988888777888888888
Q ss_pred CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc
Q 012138 201 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 280 (470)
Q Consensus 201 ~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~ 280 (470)
+++..++++|+++|+++++. ++++|++++++||+|.++|+++++++|.++|++||++||+||+|++|+++|..+..+
T Consensus 162 ~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 238 (392)
T 3ruy_A 162 PGIIVIPYGDLEALKAAITP---NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238 (392)
T ss_dssp SSEEEECTTCHHHHHHHCCT---TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGG
T ss_pred CCCeeeCcccHHHHHHHhcc---CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhh
Confidence 88889999999999999974 899999999999999999888889999999999999999999999999999888888
Q ss_pred cCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 012138 281 WEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 359 (470)
Q Consensus 281 ~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~ 359 (470)
.+++.||+++|||+++|| + |+|++++++++++.+....++.+|+.++++++++.++++.++.+++.++++++++++.+
T Consensus 239 ~~~~~~d~~~~SK~l~gG~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 317 (392)
T 3ruy_A 239 WDNVTPDMYILGKALGGGVF-PISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVG 317 (392)
T ss_dssp GGTCCCSEEEECGGGGTTTS-CCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEchhhhCChh-hhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 889999999999999999 6 99999999999999988888889999999999999999988778899999999999999
Q ss_pred HHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.|+++.. +.+...++.|.+++|.+.. +..++++.|+++||.+.+++.+++|++|++.+|++++++++++|++
T Consensus 318 ~L~~~~~---~~~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 318 QLKEIDN---PMITEVRGKGLFIGIELNE-----PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp HHTTCCC---TTEEEEEEETTEEEEEESS-----CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEeeeeEEEEEEcc-----hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8877532 2567778899999998754 4568999999999999999889999999999999999999999998
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 390 ~l~ 392 (392)
T 3ruy_A 390 VLS 392 (392)
T ss_dssp HHC
T ss_pred HhC
Confidence 874
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-55 Score=443.45 Aligned_cols=392 Identities=29% Similarity=0.475 Sum_probs=313.8
Q ss_pred hcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHh
Q 012138 49 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLT 127 (470)
Q Consensus 49 ~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~ 127 (470)
+.++.|.+.|+++++++|+++||.+|++||||.++++.+++||+||+|.+++.++++...+++. .+..+.+.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la 82 (430)
T 3i4j_A 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82 (430)
T ss_dssp CBCCSSSSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHH
T ss_pred ccccCCCCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 4556667789999999999999999999999999998899999999999999999988765443 455677899999999
Q ss_pred hhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC--Ce
Q 012138 128 SMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP--GH 203 (470)
Q Consensus 128 ~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~ 203 (470)
+.++ .++|++++||+||++.++++++.+. +.+|. ++++.||+++++|||.+..+..+++.+.++..+.+..+ ++
T Consensus 83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
T 3i4j_A 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYH-VERGE-PGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAW 160 (430)
T ss_dssp HHTTCTTCEEEEESSHHHHHHHHHHHHHHHH-HHTTC-TTCCEEEEETTC-------------------------CGGGS
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHH-HhcCC-CCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCc
Confidence 9884 6799999999999999999888642 22222 24568999999999999988888877666666777666 67
Q ss_pred eeecCCC--------HHHHHHHHHhcC-CCeEEEEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 204 LKVDFGD--------ITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 204 ~~~~~~d--------~~~Le~~l~~~~-~~~~~vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+++++ +++||+++++.+ +++++|++||++| ++|.+.++++++++|+++|++||++||+||+|+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~ 240 (430)
T 3i4j_A 161 PKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC 240 (430)
T ss_dssp CEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred eEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 7777764 489999998533 3789999999999 99998889999999999999999999999999999999
Q ss_pred CCccccccC-CCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 274 GRMLASDWE-EVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 274 G~~~~~~~~-~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
|..++++++ ++.||+++|||++++| + |+|++++++++++.+... .++++|++|+++++++.++|+.++++++.
T Consensus 241 g~~~~~~~~~~~~~di~t~sK~l~~G~~-r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 319 (430)
T 3i4j_A 241 GSPLALSRWSGVTPDIAVLGKGLAAGYA-PLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLT 319 (430)
T ss_dssp SSSSGGGGTTTCCCSEEEECGGGTTTSS-CCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred cchhhhhhhcCCCCcEEEEcccccCCcc-ccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHH
Confidence 998888989 9999999999999999 7 999999999999988753 67889999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC------chhHHHHHHHHHHcCceeccC-------CC
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------PVSAYDICLKMKERGILAKPT-------HD 414 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~l~~~Gv~~~~~-------~~ 414 (470)
++++++++++++.|+++...+| .+..+++.|.|+++++..... ...+.++++.|+++||++.|+ ++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~ 398 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFP-QMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRG 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCC
Confidence 9999999999999999877775 678889999999998753210 012467999999999999886 37
Q ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 415 TIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 415 ~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++||+|++.+|++++++++++|+++++ ++
T Consensus 399 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 428 (430)
T 3i4j_A 399 DHLLLGPPLSITAAEVDGLLALLAGALE-DV 428 (430)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 8999999999999999999999999998 64
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-55 Score=443.91 Aligned_cols=397 Identities=25% Similarity=0.433 Sum_probs=335.8
Q ss_pred hHHHHHHHhhhcccCCC-CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCC
Q 012138 39 SQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYN 116 (470)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~ 116 (470)
.++++++.+++....+. ..|+++++++|+++||.+|++||||.++.++.++||+||++.+++.+++++..+++ ..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 85 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85 (439)
T ss_dssp CCHHHHHHHHBCGGGCCCSSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEE
T ss_pred HHHHHHHHHHhccCccCCCCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCC
Confidence 45677887777665443 46899999999999999999999999999999999999999999999998875443 33456
Q ss_pred CcHHHHHHHHhhhh--CC-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc--
Q 012138 117 DKFPVFAERLTSMF--GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-- 191 (470)
Q Consensus 117 ~~~~~l~~~l~~~~--~~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~-- 191 (470)
+.+.+++++|++++ +. ++++|++||++|++.++++++.+. ++..||+++++|||.+..++.+++...
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~--------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 157 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT--------GRSGVIAFAGAYHGCTVGSMAFSGHSVQA 157 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTCCCCSSHHHHCC-------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh--------CCCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence 77899999999998 56 699999999999999999886531 445888999999999999988877655
Q ss_pred cccCCCCCCCCeeeecCC----------CHHHHHHHHH-hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcE
Q 012138 192 AIRGFGPLLPGHLKVDFG----------DITALEKIFK-ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 260 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~----------d~~~Le~~l~-~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gil 260 (470)
++..|.+..+++..++++ |+++|+++++ .+.+++++|++||++|++|.+.|+++++++|.++|++||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 237 (439)
T 3dxv_A 158 DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGIL 237 (439)
T ss_dssp ------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred hccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 555666655555666766 6899999994 22347999999999999999999999999999999999999
Q ss_pred EEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH
Q 012138 261 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 261 lI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 340 (470)
||+||+|+||+++|..+..+++++.||+++|||++++|+ |+|++++++++++.+....+..+| +++++++++.++|+.
T Consensus 238 li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~ 315 (439)
T 3dxv_A 238 VVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGL-PLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLET 315 (439)
T ss_dssp EEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-CCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHH
T ss_pred EEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCc-ceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHH
Confidence 999999999999998888888999999999999999999 999999999999999887788899 999999999999998
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-----CchhHHHHHHHHHHcCceeccCCC-
Q 012138 341 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGILAKPTHD- 414 (470)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gv~~~~~~~- 414 (470)
++++++.++++++++++++.|+++...+| .+..+++.|.++++.+.... ......++++.|+++||++.+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 394 (439)
T 3dxv_A 316 IDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN 394 (439)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC
Confidence 88888999999999999999999887775 67888999999999874210 023577899999999999988754
Q ss_pred -CEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 415 -TIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 415 -~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+++||+|++.+|++++++++++|+++++ ++.+
T Consensus 395 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~ 427 (439)
T 3dxv_A 395 GNVLEFTPPLTITETDIHKALDLLDRAFS-ELSA 427 (439)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHH-TGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhc
Confidence 8999999999999999999999999999 8765
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-54 Score=440.18 Aligned_cols=393 Identities=24% Similarity=0.400 Sum_probs=334.2
Q ss_pred CchHHHHHHHhhhcccC-------C---CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHN-------Y---HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~---~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
++|++++++.++++... + .+.|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++++
T Consensus 5 ~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 84 (429)
T 3k28_A 5 DKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER 84 (429)
T ss_dssp HHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhh
Confidence 56888999988877543 2 3679999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
.... .+.++...++++++++++ +.++++|++||++|++.|+++++.+ ++++.||+++++|||++..++.
T Consensus 85 ~~~~--~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~--------~~~~~vi~~~~~yhg~~~~~~~ 154 (429)
T 3k28_A 85 GTSF--GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY--------TGRNKILKFIGCYHGHGDSLLI 154 (429)
T ss_dssp CSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH--------HTCCEEEEEETCCCCSCGGGCS
T ss_pred CcCc--CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh--------hCCCEEEEECCCcCCCcHHHHH
Confidence 6532 345677889999999988 6889999999999999999998864 2566899999999999988877
Q ss_pred ccCCcccccCC--CCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNEAIRGF--GPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.++.......+ .+.. .....++++|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||
T Consensus 155 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 155 KAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp SCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred hcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 66543221111 1111 2467889999999999998655578999999999999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~ 335 (470)
++||+||+|+|| ++|.+++.+++++.||+++|||++++|+ |+|++++++++++.+... .+++||++|+++++++.
T Consensus 235 ~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~ 312 (429)
T 3k28_A 235 ALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGY 312 (429)
T ss_dssp CEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCC-CeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHH
Confidence 999999999999 9998888888899999999999999998 999999999999988653 47789999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHc
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKER 405 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~ 405 (470)
++|+.++ +++.++++++++++++.|+++...++ .+..+++.|.++++.+..... .....++++.|+++
T Consensus 313 aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (429)
T 3k28_A 313 ETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHG-IPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ 390 (429)
T ss_dssp HHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCC-CCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHC
Confidence 9999876 77899999999999999999877665 667889999999998753210 12357889999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
||++.+++.+.+|++ +.+|++++++++++|+++++ +++
T Consensus 391 Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~~l~-~~~ 428 (429)
T 3k28_A 391 GVFLPPSQFEGLFLS--TVHSDADIEATIAAAEIAMS-KLK 428 (429)
T ss_dssp TEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHHHHH-TCC
T ss_pred CeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHHHHH-HHh
Confidence 999999877888885 79999999999999999998 763
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=435.29 Aligned_cols=391 Identities=26% Similarity=0.422 Sum_probs=332.0
Q ss_pred CchHHHHHHHhhhcccCC----------CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHNY----------HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~----------~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
+++.++.++.++++.... .+.|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++++
T Consensus 4 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (427)
T 3fq8_A 4 IKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK 83 (427)
T ss_dssp HHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHh
Confidence 567889999888765422 3679999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
..+. .+..+...++++++++.+ +.++++|++||++|++.|+++++.+ ++++.||+++++|||.+..+..
T Consensus 84 ~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~--------~~~~~vi~~~~~yhg~~~~~~~ 153 (427)
T 3fq8_A 84 GTSF--GAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAY--------TGRDKIIKFEGCYHGHADMFLV 153 (427)
T ss_dssp CSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEEETCCCCSCGGGCS
T ss_pred CCCc--CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh--------hCCCEEEEECCCcCCCCHHHHH
Confidence 6542 236677899999999988 5789999999999999999988764 2456899999999999988777
Q ss_pred ccCCcccccCC--CCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNEAIRGF--GPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.++.......+ .+.. .++..++++|+++|+++++++++++++|++||++|++|.+.++++++++|+++|++||
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 233 (427)
T 3fq8_A 154 KAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHD 233 (427)
T ss_dssp SCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTT
T ss_pred hcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 66543221111 1111 2367889999999999998866689999999999999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~ 335 (470)
++||+||+|+|| ++|..+..+++++.||+++|||++++|+ |+|++++++++++.+... .++++|++|+++++++.
T Consensus 234 ~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~ 311 (427)
T 3fq8_A 234 ALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGI 311 (427)
T ss_dssp CEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHH
T ss_pred CEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCc-ceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHH
Confidence 999999999999 8998887888999999999999999998 999999999999988753 47889999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHc
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKER 405 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~ 405 (470)
++|+.++++++.++++++++++++.|+++...++ ....+++.|+++++++..... .....++++.|+++
T Consensus 312 aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 390 (427)
T 3fq8_A 312 KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ 390 (427)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC
Confidence 9999988888999999999999999999876654 556778899999998754321 11256789999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
||++.+++.. |+.+++.+|++++++++++|+++++
T Consensus 391 Gi~v~~~~~~--r~~~~~~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 391 GIYLAPSQFE--AGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp TEECCSSTTS--CEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CcEEecCCCC--CEEeeCcCCHHHHHHHHHHHHHHHH
Confidence 9999987655 5556799999999999999999987
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=436.62 Aligned_cols=390 Identities=24% Similarity=0.394 Sum_probs=321.2
Q ss_pred chHHHHHHHhhhcccC----------CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc
Q 012138 38 SSQQLINLEYEYSAHN----------YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~----------~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 107 (470)
++.++.++.++++... +.+.|+++++++|+++||.+|++||||.++++++++||+||+|++++.+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~ 85 (429)
T 4e77_A 6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG 85 (429)
T ss_dssp HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence 5788899888876432 234799999999999999999999999999999999999999999999999875
Q ss_pred cccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 108 TLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
... .++++...++++++++.+ +.++++|++||+||++.|+++++.+ +++..||+++++|||.+...+..
T Consensus 86 ~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~--------~~~~~ii~~~~~yhg~~~~~~~~ 155 (429)
T 4e77_A 86 LSF--GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGY--------TGRDKIIKFEGCYHGHADCLLVK 155 (429)
T ss_dssp SCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH--------HCCCEEEEETTCCCC--------
T ss_pred ccc--CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHh--------hCCCEEEEEcCccCCCChhhhhh
Confidence 432 245677889999999987 5789999999999999999988764 25568999999999998865543
Q ss_pred cCCcccc--cC----C-CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 187 SCDNEAI--RG----F-GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 187 ~~~~~~~--~~----~-~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
.+..... .+ + .........++++|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~ 235 (429)
T 4e77_A 156 AGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGA 235 (429)
T ss_dssp ----------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC
T ss_pred cCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 3321110 00 0 011124677889999999999987656899999999999999999899999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIA 336 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a 336 (470)
+||+||+|+|| ++|..++.+++++.||+++|||++++|+ |+|++++++++++.+... .+++||++|+++++++.+
T Consensus 236 lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~a 313 (429)
T 4e77_A 236 LLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFA 313 (429)
T ss_dssp EEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTS-CCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHH
T ss_pred EEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCC-CeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHH
Confidence 99999999999 9998888889999999999999999998 999999999999988753 478899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----------chhHHHHHHHHHHc
Q 012138 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSAYDICLKMKER 405 (470)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~l~~~ 405 (470)
+|+.++++++.++++++++++++.|+++...++ .+..+++.|+++++++..... .....++++.|+++
T Consensus 314 al~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (429)
T 4e77_A 314 CLTEISQVGVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE 392 (429)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC
Confidence 999998888999999999999999998876664 566788999999998865310 12347899999999
Q ss_pred CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 406 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 406 Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
||++.+++...+|+ ++.+|++++++++++|+++++
T Consensus 393 Gi~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 393 GVYLAPSAFEAGFM--SLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp TEECCSSTTSCEEC--CTTCCHHHHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCEEE--eccCCHHHHHHHHHHHHHHHH
Confidence 99999887666665 589999999999999999987
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-55 Score=443.54 Aligned_cols=399 Identities=26% Similarity=0.394 Sum_probs=331.7
Q ss_pred chHHHHHHHhhhcccCCCCCceEEEeecCCEEEe-CCCCeEEeccCCcccccCCCCCHHHH-H-HHHH---HHHHccccC
Q 012138 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWD-PEGNKYLDFLSAYSAVNQGHCHPKIM-K-ALQE---QAEKLTLSS 111 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d-~~G~~~lD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~ 111 (470)
+++++.+...++......+.++.+++++|+++|| .+|++||||.++++++++||+||+|+ + ++.+ +++...+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~ 95 (449)
T 2cjg_A 16 TPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95 (449)
T ss_dssp CGGGHHHHHHTTSCCCSCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT
T ss_pred CHHHHHHHHHHhhcccCCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456777777765332224555567999999999 99999999999999999999999999 9 9999 887765444
Q ss_pred CCCCCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchhc---ccCC-CCCcEEEEEccCccccccchh
Q 012138 112 RAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVK---KKFS-IDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~~---~~~~-~g~~~ii~~~~~yhg~~~~~~ 184 (470)
..+..+...+++++|++++ +.++|+|++||+||++.|+++++.++... ++.+ ++++.||+++++|||++..++
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 3456667899999999987 46799999999999999999887643210 0111 124589999999999999998
Q ss_pred cccCC-cccccCCCCCCCCeeeecCCC--HH-------------HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 185 SMSCD-NEAIRGFGPLLPGHLKVDFGD--IT-------------ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~-------------~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
.+++. +.++..+.++.+++..+|++| .+ +|+++++++.+++++|++||++|++|.+.+++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 88875 455667777777788888877 43 388888754458999999999999998777999999
Q ss_pred HHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhh-----cCcCCccCC
Q 012138 249 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC-----IQPGEHGST 323 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~-----~~~~~~~~t 323 (470)
+|+++|++||++||+||+|+|||++|.+++++++++.||+++|||++ |+|++++++++++. +....+++|
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t 330 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNST 330 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccC
Confidence 99999999999999999999999999888788889999999999988 78999999999886 333467789
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH
Q 012138 324 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
|++|+++++++.++|+.++++++.++++++++++++.|+++...+|..+..+++.|.|+++++... ....++++.|+
T Consensus 331 ~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~l~ 407 (449)
T 2cjg_A 331 WGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTT---ADRDELIRQLW 407 (449)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSH---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECCh---HHHHHHHHHHH
Confidence 999999999999999998878899999999999999999987666522677889999999877532 24678999999
Q ss_pred HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 404 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 404 ~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++||++.+++.+++||+|++.+|+++|++++++|+++++ ++
T Consensus 408 ~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~ 448 (449)
T 2cjg_A 408 QRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALP-VV 448 (449)
T ss_dssp HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred HCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 999999988789999999999999999999999999987 53
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-54 Score=440.62 Aligned_cols=399 Identities=23% Similarity=0.359 Sum_probs=319.2
Q ss_pred CCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc--cccCC
Q 012138 35 SSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL--TLSSR 112 (470)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~ 112 (470)
+.+++++++++.+++......++|.++++++|+++||.||++||||.+++++.++||+||+|++++.+++... .+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~ 102 (472)
T 1ohv_A 23 PGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPA 102 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCC
T ss_pred CCccHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccc
Confidence 3456788888888877554455678899999999999999999999999999999999999999999987543 22211
Q ss_pred ---CCCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhc-cc---------------CCCC--CcEE
Q 012138 113 ---AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVK-KK---------------FSID--EAII 169 (470)
Q Consensus 113 ---~~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~-~~---------------~~~g--~~~i 169 (470)
....++.++++++|+++. +.++|+|++||+||++.|+++++.|+..+ ++ ..+| ++.|
T Consensus 103 ~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~i 182 (472)
T 1ohv_A 103 LGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSI 182 (472)
T ss_dssp TTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEE
T ss_pred cccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeE
Confidence 113456667777777766 57899999999999999999998653100 11 0124 4689
Q ss_pred EEEccCccccccchhcccCCcccccCCCCCCCCe-------ee------ecCC------CHHHHHHHHHhcCC---CeEE
Q 012138 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH-------LK------VDFG------DITALEKIFKESGD---QIAG 227 (470)
Q Consensus 170 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~------d~~~Le~~l~~~~~---~~~~ 227 (470)
|+++++|||++.+++.+++....+....+.. ++ .. +++| |+++|+++++++++ ++++
T Consensus 183 i~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 261 (472)
T 1ohv_A 183 LSFMGAFHGRTMGCLATTHSKAIHKIDIPSF-DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAG 261 (472)
T ss_dssp EEETTCCCCSSHHHHHHCCSCHHHHTTSCCC-CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCcccccHHHHhcCCCccccccCCCCC-CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 9999999999999988877543321111110 00 00 1122 68899999976432 7999
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC--cceeecccc-ccCCCcceeE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKA-LGGGVIPVSA 304 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~--pdi~s~sK~-l~gG~~~ig~ 304 (470)
|++||++|++|.+.|+++|+++|+++|++||++||+||+|+|||++|.+++++++++. ||+++|||+ ++||+
T Consensus 262 vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~----- 336 (472)
T 1ohv_A 262 IIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF----- 336 (472)
T ss_dssp EEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----
T ss_pred EEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----
Confidence 9999999999998889999999999999999999999999999999988888888886 999999999 78776
Q ss_pred EEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE
Q 012138 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV 384 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~ 384 (470)
++ ++++ ..+....+++||++|+++++++.++|+.++++++.++++++++++++.|+++...+|..+..+++.|.|+++
T Consensus 337 ~~-~~~~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~ 414 (472)
T 1ohv_A 337 FH-KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSF 414 (472)
T ss_dssp EE-CGGG-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEE
T ss_pred cC-chhh-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEE
Confidence 33 6665 334556678899999999999999999988888999999999999999999866665236778899999998
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++... .....+++.|+++||++.+++.+++||+|++.+|+++|++++++|+++++ ++
T Consensus 415 ~~~~~---~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~-~~ 471 (472)
T 1ohv_A 415 DTPDE---SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA-DF 471 (472)
T ss_dssp ECSSH---HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCh---hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 76532 25678999999999999987778999999999999999999999999998 65
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-53 Score=429.95 Aligned_cols=396 Identities=29% Similarity=0.480 Sum_probs=330.2
Q ss_pred chHHHHHHHhhhcccCCCC-CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC
Q 012138 38 SSQQLINLEYEYSAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 116 (470)
++.++.+..+++....+.. .|+++++++|+++||.+|++|||+.++.++.++||+||+|.+++.++++...+.+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 84 (433)
T 1zod_A 5 DDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLS 84 (433)
T ss_dssp TCHHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCC
T ss_pred hhHHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCC
Confidence 4677888877776665554 589999999999999999999999999888899999999999999999886543344556
Q ss_pred CcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 117 DKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
+...+++++++++++ .++|++++||++|++.++++++.+ ++++.||+++++|||.+..++.+++.. ++.
T Consensus 85 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~--------~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~ 155 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV--------TGKYEIVGFAQSWHGMTGAAASATYSA-GRK 155 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH--------HTCCEEEEETTCCCCSSHHHHHTCCSS-CCS
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh--------hCCCeEEEECCCcCCCChhHHhhcCCc-ccc
Confidence 678899999999985 578999999999999999987653 245589999999999999888776543 233
Q ss_pred CCCCCCCCeeeec--------CC---------CHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 195 GFGPLLPGHLKVD--------FG---------DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 195 ~~~~~~~~~~~~~--------~~---------d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
.+.+...++..++ ++ |+++|++++++++ +++++|++||++|++|.+.++++++++|+++|++
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~ 235 (433)
T 1zod_A 156 GVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA 235 (433)
T ss_dssp SSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH
T ss_pred ccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 4444444443332 33 3899999998532 4789999999999999887799999999999999
Q ss_pred cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC--CccCCCCCCHHHHHHH
Q 012138 257 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVA 334 (470)
Q Consensus 257 ~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa 334 (470)
||++||+||+|+||+++|..++++.+++.||+++|||++++|+ |+|++++++++++.+... .+++++++|+++++++
T Consensus 236 ~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 236 RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVG 314 (433)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred hCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCC-CeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence 9999999999999999998777787889999999999999998 999999999999888653 3448899999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC-C----chhHHHHHHHHHHcCcee
Q 012138 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-L----PVSAYDICLKMKERGILA 409 (470)
Q Consensus 335 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~-~----~~~~~~~~~~l~~~Gv~~ 409 (470)
.++|+.++++++.++++++++++++.|+++...+| .+..+++.|.|+++++.... . .....++++.|+++||++
T Consensus 315 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 393 (433)
T 1zod_A 315 LRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSM 393 (433)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeE
Confidence 99999988888999999999999999998866665 56778899999998875310 0 124678999999999999
Q ss_pred ccCC--C--CEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 410 KPTH--D--TIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 410 ~~~~--~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.++. . +++||+|++.+|++++++++++|+++++ ++
T Consensus 394 ~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~-~~ 432 (433)
T 1zod_A 394 NIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE-RA 432 (433)
T ss_dssp CEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred eccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH-Hh
Confidence 8764 2 8999999999999999999999999987 54
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=466.27 Aligned_cols=386 Identities=23% Similarity=0.317 Sum_probs=327.6
Q ss_pred CCchHHHHHHHhhhcccC-------CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc
Q 012138 36 SSSSQQLINLEYEYSAHN-------YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT 108 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 108 (470)
.+++++++++.++++... |.++|+++++++|+++||.|||+||||.+++++.++||+||+|++++.+++++..
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~ 133 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL 133 (465)
Confidence 456788888888887632 4457999999999999999999999999999999999999999999999998743
Q ss_pred ccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc
Q 012138 109 LSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS 187 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~ 187 (470)
. ..++++...+|+++|++++ +.++++|+|||+||++.|+++++.+ ++++.||+++++|||++..++ +
T Consensus 134 ~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~--------tgr~~ii~~~~~yHG~~~~~~--s 201 (465)
T 2yky_A 134 N--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAI--------TGRKTVLAFDGGYHGGLLNFA--S 201 (465)
Confidence 2 2356788899999999998 7889999999999999999998764 356689999999999998877 2
Q ss_pred CCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 188 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
+ +. ..++ .+.+..++|+|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||++||+||+|
T Consensus 202 g-~~-~~g~---~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 276 (465)
T 2yky_A 202 G-HA-PTNA---PYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276 (465)
Confidence 2 10 1111 01346778899999999998644589999999998889998889999999999999999999999999
Q ss_pred cCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-----CCccCCCCCCHHHHHHHHHHHHHHh
Q 012138 268 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLASAVAIASLDVIR 342 (470)
Q Consensus 268 ~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~l~~~~ 342 (470)
+ | ++|.+++++++++.||+++|||++++|+ |+|++++++++++.+.+ ..+++||++||++++++.++|+.++
T Consensus 277 ~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~-piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~ 353 (465)
T 2yky_A 277 T-S-RLSGGGAQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY 353 (465)
Confidence 9 6 8898888899999999999999999998 99999999999998876 2477899999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHHcCceeccC
Q 012138 343 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
++++.+++++++++++++|+++..+++ .+..+++.|+|+++++..... ......+++.|+++||++.|+
T Consensus 354 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~ 432 (465)
T 2yky_A 354 TRQAASDLSASGDRFRANLNRIAVENQ-APLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPR 432 (465)
Confidence 888999999999999999999876664 566789999999998754110 012567889999999999887
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 413 HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 413 ~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.... |++.+|++||++++++|+++++ +++.
T Consensus 433 ~~~~----~s~~~t~edid~~l~~l~~~l~-~~~~ 462 (465)
T 2yky_A 433 GMYA----LSLEIADAGRDAFAEALADFIG-EQRA 462 (465)
Confidence 5332 7789999999999999999998 7643
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-53 Score=426.26 Aligned_cols=394 Identities=25% Similarity=0.400 Sum_probs=324.8
Q ss_pred CCchHHHHHHHhhhcccC-------C-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc
Q 012138 36 SSSSQQLINLEYEYSAHN-------Y-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL 107 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-------~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 107 (470)
.+++++++++.++++... + .++|+++++++|+++||.+|++||||.++++++++||+||++.+++.+++++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~ 88 (434)
T 2epj_A 9 GEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG 88 (434)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC
Confidence 456889999998887532 2 45599999999999999999999999999998899999999999999999874
Q ss_pred cccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc
Q 012138 108 TLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM 186 (470)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~ 186 (470)
.. ..+..+...+++++|++++ +.++++|++||++|++.++++++.++ +++.||+++++|||.+..++..
T Consensus 89 ~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~--------~~~~vi~~~~~yhg~~~~~~~~ 158 (434)
T 2epj_A 89 WL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT--------GRDLILKFDGCYHGSHDAVLVA 158 (434)
T ss_dssp SC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEEETCCCCSSGGGSEE
T ss_pred CC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh--------CCCeEEEEcCCcCCCCHHHHHh
Confidence 32 2355677899999999998 78999999999999999999876531 3447888899999998877655
Q ss_pred cCCcccc--cCCC-CC----CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 187 SCDNEAI--RGFG-PL----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 187 ~~~~~~~--~~~~-~~----~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
++..... .+.. .. ..++..++++|+++|+++++++++++++|++||+++++|.+.|+++++++|+++|++||+
T Consensus 159 ~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ 238 (434)
T 2epj_A 159 AGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA 238 (434)
T ss_dssp CC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC
Confidence 4321100 0011 11 023567888999999999986434789999999999999998899999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC---CccCCCCCCHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIA 336 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~~~t~~~~~~~~aaa~a 336 (470)
+||+||+|+|| ++|..++++++++.||+++|||++++|+ |+|++++++++++.+... .+++||++|+++++++.+
T Consensus 239 ~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 239 LLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp EEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHH
T ss_pred EEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCc-ceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHH
Confidence 99999999999 7787777778899999999999999998 999999999999988752 367889999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----------CchhHHHHHHHHHHcC
Q 012138 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAYDICLKMKERG 406 (470)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~l~~~G 406 (470)
+|+.++++++.++++++++++++.|+++...++ ....+++.|.++++.+.... ......++++.|+++|
T Consensus 317 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 395 (434)
T 2epj_A 317 TLKALEEEPVYSVSREAAKALEEAASEVLDRTG-LPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRG 395 (434)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCC
Confidence 999988788999999999999999998765443 45567889999999886411 0124678999999999
Q ss_pred ceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 407 ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 407 v~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|++.+++...+| +++.+|++++++++++|+++++ ++
T Consensus 396 v~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~~l~-~~ 431 (434)
T 2epj_A 396 VFIAPSNLEAVF--TGLPHQGEALEIAVEGLRSSLK-TV 431 (434)
T ss_dssp EECCSSTTSCEE--CCTTCSHHHHHHHHHHHHHHHH-HH
T ss_pred eEEeccCCCcEE--EeccCCHHHHHHHHHHHHHHHH-HH
Confidence 999988655454 5589999999999999999988 65
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=414.16 Aligned_cols=392 Identities=31% Similarity=0.505 Sum_probs=340.1
Q ss_pred HhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHH
Q 012138 46 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAER 125 (470)
Q Consensus 46 ~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (470)
..+|..+.|.+.|+++++++|+++||.+|++||||.++.+..++||+||++.+++.++++...+....+..+...+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (406)
T 4adb_A 10 FDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKK 89 (406)
T ss_dssp HHHHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHH
T ss_pred HHHHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHH
Confidence 34567788888999999999999999999999999999988999999999999999999876554444566778999999
Q ss_pred HhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 126 LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 126 l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
++++++.+++++++||++|++.++++++.+.... +. ++++.|++.+++||+....+...++.+.+...+.+...++..
T Consensus 90 la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~-~~-~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
T 4adb_A 90 LIDATFADRVFFCNSGAEANEAALKLARKFAHDR-YG-SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRH 167 (406)
T ss_dssp HHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHH-TC-TTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEE
T ss_pred HHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhc-CC-CCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceE
Confidence 9999999999999999999999999887532111 11 244589999999999999988888877777777777778889
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCc-cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G-~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
++++|+++|++++++ ++++|+++| +||+| .+.++.+++++|.++|++||++||+||+|+||+++|..++.+.+++
T Consensus 168 ~~~~d~~~l~~~l~~---~~~~v~~~p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 243 (406)
T 4adb_A 168 AAYNDINSASALIDD---STCAVIVEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV 243 (406)
T ss_dssp ECTTCHHHHHTTCST---TEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC
T ss_pred eCCCcHHHHHHHhcC---CeEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC
Confidence 999999999998874 899999998 55555 4445889999999999999999999999999999998887788888
Q ss_pred CcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 012138 285 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 285 ~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l 364 (470)
.||+++|||++++|+ |+|++++++++++.+....++.+++.++++++++.++|+.++++++.++++++++++.+.|+++
T Consensus 244 ~~d~~t~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 322 (406)
T 4adb_A 244 TPDLLTTAKALGGGF-PVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI 322 (406)
T ss_dssp CCSEEEECGGGGTTS-CCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEechhhcCCC-CeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 9999999999999998878888999999999999999998877889999999999999999988
Q ss_pred HhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 365 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
...++ .+..+++.|.++++.+.... ..+..++++.|.++||.+.+++.+++|+++++.+|++++++++++|+++++ +
T Consensus 323 ~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~-~ 399 (406)
T 4adb_A 323 NHRYG-LFSEVRGLGLLIGCVLNADY-AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACE-H 399 (406)
T ss_dssp HHHHC-CEEEEEEETTEEEEEECTTT-TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHH-H
T ss_pred HHhCC-CceEEEEEEEEEEEEEeCCc-HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHHHHH-H
Confidence 66543 56677888999999886531 124788999999999999998889999999999999999999999999998 7
Q ss_pred cCC
Q 012138 445 LPK 447 (470)
Q Consensus 445 ~~~ 447 (470)
+.+
T Consensus 400 ~~~ 402 (406)
T 4adb_A 400 FVS 402 (406)
T ss_dssp HHC
T ss_pred HHh
Confidence 643
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=423.72 Aligned_cols=382 Identities=26% Similarity=0.422 Sum_probs=317.6
Q ss_pred CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhh--CCC
Q 012138 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYD 133 (470)
Q Consensus 57 ~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~ 133 (470)
.|+++++++|+++||.+|++|||+.+++++.++||+||+|.+++.+++++...... .+..+...+++++|++++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 48899999999999999999999999998889999999999999999987642111 355667889999999998 567
Q ss_pred eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----
Q 012138 134 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---- 209 (470)
Q Consensus 134 ~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 209 (470)
+|++++||++|++.++++++.++. .+|. ++++.||+++++|||.+..++.+++.+.++..|.+..+++..++.+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~-~~g~-~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 189 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWR-LKGQ-ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHH-HTTC-TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGG
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHH-hcCC-CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcccc
Confidence 899999999999999998876431 1222 2345899999999999988887776655555666555554433321
Q ss_pred ------C--------HHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC
Q 012138 210 ------D--------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 274 (470)
Q Consensus 210 ------d--------~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G 274 (470)
| +++|++++++++ +++++|++||++|++|.+.|+++++++|.++|++||++||+||+|+|||++|
T Consensus 190 ~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g 269 (449)
T 3a8u_X 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG 269 (449)
T ss_dssp GTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred CccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccC
Confidence 5 899999998543 3789999999989999988899999999999999999999999999999999
Q ss_pred CccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC---------CccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 275 RMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG---------EHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~---------~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
..+.++.+++.||+++|||++++| + |+|++++++++++.+... .++.++++|+++++++.++|+.++++
T Consensus 270 ~~~~~~~~~~~~di~s~sK~l~~G~~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 348 (449)
T 3a8u_X 270 SMFGADSFGVTPDLMCIAKQVTNGAI-PMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE 348 (449)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhcCCCCCEEEEcccccCCCC-ceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence 877778888899999999999998 6 999999999999887653 35678899999999999999998877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCch--hHHHHHHHHHHcCceeccCCCCEEEEecC
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV--SAYDICLKMKERGILAKPTHDTIVRLTPP 422 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~ 422 (470)
++.++++++++++++.|+++. .+| .+..+++.|.++++++....... +..++++.|+++||++.+++ +++||+|+
T Consensus 349 ~~~~~~~~~~~~l~~~L~~l~-~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~ 425 (449)
T 3a8u_X 349 NLVQSVAEVAPHFEKALHGIK-GAK-NVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPT 425 (449)
T ss_dssp THHHHHHHHHHHHHHHHHTTT-TST-TEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHh-cCC-CeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECC
Confidence 899999999999999998743 344 56667889999999886432111 23479999999999999875 89999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhccc
Q 012138 423 LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+|++++++++++|+++++ ++
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~-~~ 447 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLN-KL 447 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-HC
T ss_pred CcCCHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999998 64
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=414.58 Aligned_cols=382 Identities=34% Similarity=0.605 Sum_probs=315.1
Q ss_pred hHHHHHHHhhh-cccCCCC--CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCC-CHHHHHHHHHHHHHccccC-CC
Q 012138 39 SQQLINLEYEY-SAHNYHP--VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHC-HPKIMKALQEQAEKLTLSS-RA 113 (470)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~--~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~ 113 (470)
++++++...+| ..+.+.+ .|+++++++|+++||.+|++|||+.++.+.+++||+ ||+|++++.++++...+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~ 82 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence 56778888888 6777765 799999999999999999999999999988899999 9999999999998764422 23
Q ss_pred CCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
+..+...+++++++++++. ++|++++||+||++.++++++.+ + ++.||+++++|||.+..+..+++..
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~--------~-~~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT--------G-RKYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT--------S-CCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred cCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh--------h-CCcEEEECCCcCCCCHhhHhhcCCc
Confidence 5566688999999999874 58999999999999999987653 2 3489999999999999888777654
Q ss_pred -ccccCCCCCCCCeeeecCC---------------------CHHHHH-HHHHhcC--CCeEEEEEccccCCCccccCChh
Q 012138 191 -EAIRGFGPLLPGHLKVDFG---------------------DITALE-KIFKESG--DQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~---------------------d~~~Le-~~l~~~~--~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
.++..+.+...++..+|++ |+++|+ ++++++. +++++|++||++|++|.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~ 233 (419)
T 2eo5_A 154 AVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKN 233 (419)
T ss_dssp GGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTT
T ss_pred cccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHH
Confidence 4444555555556666654 367888 8887421 37899999998889998777999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcCCccCCC
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTF 324 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~ 324 (470)
++++|+++|++||++||+||+|++|+++|..++++.+++.||++||||++++| + |+|+++++++++ .+ ...+..+|
T Consensus 234 ~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~-riG~~~~~~~~~-~~-~~~~~~t~ 310 (419)
T 2eo5_A 234 FFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIM-PIGATIFRKDLD-FK-PGMHSNTF 310 (419)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTS-CCEEEEEEGGGC-CC-------CC
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCcc-ceEEEEEchHhh-cC-CcccCCCC
Confidence 99999999999999999999999999999877778788899999999999999 7 999999999988 77 44677899
Q ss_pred CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH
Q 012138 325 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 404 (470)
Q Consensus 325 ~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (470)
+.|+++++++.++|+.+++ +.++++++++++.+.|+++ +..+++.|.|+++++.... .... +++.|++
T Consensus 311 ~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~-------~~~~~~~g~~~~i~~~~~~--~~~~-~~~~l~~ 378 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL-------ADDVRGIGLAWGLEYNEKK--VRDR-IIGESFK 378 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS-------SSEEEEETTEEEEECSCHH--HHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-------hhheEeeeEEEEEEEecCc--cHHH-HHHHHHH
Confidence 9999999999999998764 8888999999998888663 3356788999988773211 1355 9999999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+||++.+++.+++||+|++.+|++++++++++|+++++ ++
T Consensus 379 ~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~-~~ 418 (419)
T 2eo5_A 379 RGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIK-VV 418 (419)
T ss_dssp TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 99999988778999999999999999999999999987 64
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-51 Score=411.55 Aligned_cols=393 Identities=27% Similarity=0.456 Sum_probs=317.8
Q ss_pred HHHHhhhcccCCC----CCceE-EEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCCC
Q 012138 43 INLEYEYSAHNYH----PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFYN 116 (470)
Q Consensus 43 ~~~~~~~~~~~~~----~~p~~-~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~ 116 (470)
++.++++.++.+. +.|++ +++++|+++||.+|+.|||+.++.++.++||+||+|.+++.++++.....+ ..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~ 85 (429)
T 1s0a_A 6 LAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85 (429)
T ss_dssp HHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEEC
T ss_pred hhHHHHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 4455566666543 34665 999999999999999999999999888999999999999999998764432 23445
Q ss_pred CcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc-cc
Q 012138 117 DKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-AI 193 (470)
Q Consensus 117 ~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~-~~ 193 (470)
+...++++++++++ +.++|+|++||++|++.++++++.++. .+|. + ++.||+++++||+.+..+..+++... ++
T Consensus 86 ~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~-~~g~-~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 162 (429)
T 1s0a_A 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQ-AKGE-A-RQRFLTFRNGYHGDTFGAMSVCDPDNSMH 162 (429)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHH-HHTC-C-CCEEEEETTCCCCSSHHHHTTSCTTTTTG
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhc-ccCC-C-CCeEEEECCCCCCCchhhhhhcCCchhhc
Confidence 66789999999998 568999999999999999998764321 0111 2 34888999999999887776655322 23
Q ss_pred cCCCCCCCCeeeec-----------CCCHHHHHHHHHhcCCCeEEEEEccc-cCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 194 RGFGPLLPGHLKVD-----------FGDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 194 ~~~~~~~~~~~~~~-----------~~d~~~Le~~l~~~~~~~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
..+.+..++...++ +.|+++|+++++++++++++|++||+ +||+|.+.|+++++++|.++|++||++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~l 242 (429)
T 1s0a_A 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL 242 (429)
T ss_dssp GGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEE
T ss_pred ccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 33333333322222 24789999999864447899999998 9999988879999999999999999999
Q ss_pred EEeccccCCcccCCccccccCCCCcceeeccccccCC-CcceeEEEecHHHHhhcCcC-----CccCCCCCCHHHHHHHH
Q 012138 262 IADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG-----EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 262 I~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aaa~ 335 (470)
|+||+|+|||++|..++++.+++.||+++|||+++|| + |+|++++++++++.+... .++.++++|+++++++.
T Consensus 243 i~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~-~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~ 321 (429)
T 1s0a_A 243 IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTM-TLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAAN 321 (429)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSS-CCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHH
T ss_pred EEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCc-cceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHH
Confidence 9999999999998877777788899999999999999 7 999999999998887653 25678899999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCC
Q 012138 336 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDT 415 (470)
Q Consensus 336 a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 415 (470)
++++.++++++.++++++++++++.|+++.. +| .+..+++.|.++++.+.... +..++++.|+++||++.+. ++
T Consensus 322 aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~Gi~v~~~-~~ 395 (429)
T 1s0a_A 322 ASLAILESGDWQQQVADIEVQLREQLAPARD-AE-MVADVRVLGAIGVVETTHPV---NMAALQKFFVEQGVWIRPF-GK 395 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CT-TEEEEEEETTEEEEEESSCB---CHHHHHHHHHHTTEECCCB-TT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CC-CEEEEEEeeEEEEEEECCcc---cHHHHHHHHHHCCCEEecc-CC
Confidence 9999888778889999999999999987643 44 46667888999888875432 5678999999999999886 47
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++||+|++.+|++++++++++|+++++ +++
T Consensus 396 ~iRis~~~~~t~e~i~~~~~~l~~~~~-~~~ 425 (429)
T 1s0a_A 396 LIYLMPPYIILPQQLQRLTAAVNRAVQ-DET 425 (429)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHTS-SGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH-hhh
Confidence 999999999999999999999999988 654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-51 Score=413.49 Aligned_cols=389 Identities=26% Similarity=0.434 Sum_probs=319.6
Q ss_pred CchHHHHHHHhhhcccC-------CC---CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHH
Q 012138 37 SSSQQLINLEYEYSAHN-------YH---PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK 106 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~~---~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 106 (470)
+++++++++.++++... +. ..|+++++++|+++||.+|++||||.++++++++||+||+|.+++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 83 (424)
T 2e7u_A 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83 (424)
T ss_dssp HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence 45788999998887532 22 248999999999999999999999999999999999999999999999987
Q ss_pred ccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc
Q 012138 107 LTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS 185 (470)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~ 185 (470)
... ..+..+...++++++++++ +.+++++++||++|++.++++++.++ +++.||+++++|||.+..++.
T Consensus 84 ~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~--------~~~~vi~~~~~yhg~~~~~~~ 153 (424)
T 2e7u_A 84 GLT--FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYT--------GRPYIVKFRGNYHGHADGLLV 153 (424)
T ss_dssp CSC--CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEETTCCCCCCGGGSE
T ss_pred CCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh--------CCCEEEEECCCcCCCcHHHHH
Confidence 432 2355667899999999998 78899999999999999999876542 345788999999999887765
Q ss_pred ccCCccc--ccCCCCCC-----CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 186 MSCDNEA--IRGFGPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 186 ~~~~~~~--~~~~~~~~-----~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
..+.... ..+..... .+...++++|+++|++++++.++++++|++||+++++|.+.|+++++++|+++ ++||
T Consensus 154 ~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g 232 (424)
T 2e7u_A 154 EAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYG 232 (424)
T ss_dssp ECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGT
T ss_pred hcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcC
Confidence 5432110 00111100 24577888999999999985334789999999888899988899999999999 9999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-C--CccCCCCCCHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-G--EHGSTFGGNPLASAVAI 335 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-~--~~~~t~~~~~~~~aaa~ 335 (470)
++||+||+|+|| ++|..++++++++.||++||||++++|+ |+|++++++++++.+.. . .+++||++|+++++++.
T Consensus 233 ~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 310 (424)
T 2e7u_A 233 VLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGL 310 (424)
T ss_dssp CEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHH
T ss_pred CEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCc-ceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHH
Confidence 999999999999 7787777778899999999999999998 99999999999998875 2 36778999999999999
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC----------CchhHHHHHHHHHH
Q 012138 336 ASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAYDICLKMKE 404 (470)
Q Consensus 336 a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~l~~ 404 (470)
++|+.+++ +++.++++++++++++.|+++..++| .+..+++.|.|+++++.... ......++++.|++
T Consensus 311 aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 389 (424)
T 2e7u_A 311 ATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD 389 (424)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH
Confidence 99999887 88999999999999999998866554 44567889999999875411 01246689999999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+||++.+++...+| +++.+|++++++++++|++++
T Consensus 390 ~Gv~v~~~~~~~~~--~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 390 RGIYWPPSNFEAAF--LSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp TTEECCSSSSSCEE--CCTTCCHHHHHHHHHHHHHHC
T ss_pred CCeEEeccCCCceE--eeccCCHHHHHHHHHHHHHhC
Confidence 99999988655555 558999999999999998864
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-51 Score=415.22 Aligned_cols=391 Identities=24% Similarity=0.308 Sum_probs=307.2
Q ss_pred CchHHHHHHHhhhcccC-------CCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc
Q 012138 37 SSSQQLINLEYEYSAHN-------YHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL 109 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 109 (470)
+++++++++.++++... +.++|+++++++|+++||.+|++||||.+++++.++||+||+|.+++.++++....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~ 91 (453)
T 2cy8_A 12 EGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ 91 (453)
T ss_dssp HHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS
T ss_pred chhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC
Confidence 45788999998887542 45679999999999999999999999999999999999999999999999977432
Q ss_pred cCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 110 SSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 110 ~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
..+..+.+.++++++++.+ +.++|++++||++|++.++++++.++ +++.||+++++|||.+.......+
T Consensus 92 --~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~--------~~~~vi~~~~~yhg~~~~~~~~~~ 161 (453)
T 2cy8_A 92 --YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT--------GRRMILRFEGHYHGWHDFSASGYN 161 (453)
T ss_dssp --SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH--------CCCEEEEECC--------------
T ss_pred --CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh--------CCCEEEEEcCCcCCCchhhHhhcC
Confidence 2356778899999998887 67899999999999999999876431 334788899999999887655432
Q ss_pred C----cccccCCC-CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 189 D----NEAIRGFG-PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 189 ~----~~~~~~~~-~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
. +.. .++. ...+++..++++|+++|+++++++++++++|++||++|++|.+.|+++++++|+++|++||++||+
T Consensus 162 ~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~ 240 (453)
T 2cy8_A 162 SHFDGQPA-PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFIL 240 (453)
T ss_dssp ---------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred CccCCCcC-CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2 100 0010 011235677889999999999864347899999999889999888999999999999999999999
Q ss_pred eccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc-----CCccCCCCCCHHHHHHHHHHH
Q 012138 264 DEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLASAVAIASL 338 (470)
Q Consensus 264 Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~-----~~~~~t~~~~~~~~aaa~a~l 338 (470)
||+|+|| ++|..++++++++.||+++|||++++|+ |+|++++++++++.+.. ..+++||++|+++++++.++|
T Consensus 241 DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal 318 (453)
T 2cy8_A 241 DEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318 (453)
T ss_dssp ECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHH
T ss_pred ecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCc-ceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHH
Confidence 9999999 8887777778889999999999999998 99999999999998876 136678999999999999999
Q ss_pred HH-HhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc-----C-------C----CchhHHHHHHH
Q 012138 339 DV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-----T-------A----LPVSAYDICLK 401 (470)
Q Consensus 339 ~~-~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~-----~-------~----~~~~~~~~~~~ 401 (470)
+. + .+++.++++++++++++.|+++...+| .+..+++.|.++++.+.. . . ......++++.
T Consensus 319 ~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (453)
T 2cy8_A 319 DTIL-EDDVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMA 396 (453)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHH
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHH
Confidence 98 7 777899999999999999998865554 555678999999998864 1 0 01236789999
Q ss_pred HHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 402 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 402 l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
|+++||++.|.+ .+| +++.++++++++++++|+++++ ++.+
T Consensus 397 l~~~Gv~v~~~~--~~~--l~~~~t~~~i~~~l~~l~~~l~-~~~~ 437 (453)
T 2cy8_A 397 LILEGVDIGGRG--SVF--LSAQHEREHVEHLVTTFDRVLD-RLAD 437 (453)
T ss_dssp HHHTTEECBTTT--EEE--CCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHCCeEEeCCC--CEE--eeccCCHHHHHHHHHHHHHHHH-HHHh
Confidence 999999997652 355 4589999999999999999998 7754
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=398.73 Aligned_cols=380 Identities=34% Similarity=0.621 Sum_probs=320.2
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 131 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 131 (470)
..+.+.|+++++++|+++||.+|++|+||.++++..++|+++|++.+++.++++.....+..+..+...++++++++++|
T Consensus 17 ~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g 96 (397)
T 2ord_A 17 NTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF 96 (397)
T ss_dssp SCCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT
T ss_pred hcccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC
Confidence 34556799999999999999999999999999888899999999999999999886554333445678899999999999
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCH
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI 211 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (470)
.+++++++||++|++.++++++.+... + .++++.|++.+++||+....++...+...++.++.|...++..++++|+
T Consensus 97 ~~~v~~~~gg~~a~~~al~~~~~~~~~--~-~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 173 (397)
T 2ord_A 97 GGKVFFANTGTEANEAAIKIARKYGKK--K-SEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV 173 (397)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHH--H-CTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhc--C-CCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH
Confidence 999999999999999999987642110 0 0234478888999999988666665554444456666667788888999
Q ss_pred HHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec
Q 012138 212 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL 291 (470)
Q Consensus 212 ~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~ 291 (470)
++|++++++ ++++|++++++||+|.+..+.+++++|.++|++||++||+||+|+||+++|..+..+.++..||+++|
T Consensus 174 ~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~ 250 (397)
T 2ord_A 174 EDLRRKMSE---DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTT 250 (397)
T ss_dssp HHHHHHCCT---TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE
T ss_pred HHHHHHhhc---CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeee
Confidence 999999875 89999999999999993338999999999999999999999999999888876655666777999999
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
||++++|+ |+|+++++++++ .+....+..+|+.++++++++.++|+.+.++++.++++++++++.+.|+++...+| .
T Consensus 251 sK~~~~G~-r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~ 327 (397)
T 2ord_A 251 AKGLGGGV-PIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-V 327 (397)
T ss_dssp CGGGGTTS-CCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred ccccCCCc-CeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-c
Confidence 99999998 999999998887 77655667788999999999999999887777899999999999999988754454 4
Q ss_pred eEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 372 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
+..+++.|.++++.+.... +..++++.|+++||.+.+++++++||++++.++++++++++++|+++++ +
T Consensus 328 ~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~-~ 396 (397)
T 2ord_A 328 VADVRGMGLMIGIQFREEV---SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ-G 396 (397)
T ss_dssp EEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-T
T ss_pred eEEEEEEeEEEEEEECChH---HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHHHHh-h
Confidence 5556788999988876432 5788999999999999988788999999999999999999999999987 5
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=399.13 Aligned_cols=398 Identities=28% Similarity=0.544 Sum_probs=326.5
Q ss_pred chHHHHHHHhhhcccCCCC-CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCC
Q 012138 38 SSQQLINLEYEYSAHNYHP-VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFY 115 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~-~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 115 (470)
+++++.++..++.++.+.. .|+++++++|+++||.+|++||||.++.+..++||++|++.+++.++++...... ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~ 82 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 82 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEE
T ss_pred hHHHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccC
Confidence 4677888888888877654 6899999999999999999999999998888899999999999999987654432 2234
Q ss_pred CCcHHHHHHHHhhhh-C-C-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-c
Q 012138 116 NDKFPVFAERLTSMF-G-Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-E 191 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~-~-~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~ 191 (470)
.+...++++.|++++ + . ++|++++||++|++.++++++.+ . .++ .|++++++||+....++.+.+.. .
T Consensus 83 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~--~-----~~~-~vi~~~p~y~~~~~~~~~~~g~~~~ 154 (426)
T 1sff_A 83 YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA--T-----KRS-GTIAFSGAYHGRTHYTLALTGKVNP 154 (426)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--H-----TCC-EEEEETTCCCCSSHHHHHHSSCCTT
T ss_pred CHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh--h-----CCC-eEEEECCCcCCCchHhhhhcCCccc
Confidence 556788999999988 5 4 78999999999999999965432 1 123 78899999999987766665432 2
Q ss_pred cccCCCCCCCCeeeecCC----------CHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 192 AIRGFGPLLPGHLKVDFG----------DITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~----------d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
++..+.+...++..++++ |+++|++++++. +.++++|+++|+++++|.+.++++++++|.++|++||+
T Consensus 155 ~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~ 234 (426)
T 1sff_A 155 YSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI 234 (426)
T ss_dssp TTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 333444444445445442 688999999741 13789999999766699777799999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 339 (470)
+||+||+|+||+++|..++++.+++.||+++|||++++|+ |+|++++++++++.+....+..+++.++++++++.++|+
T Consensus 235 ~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~Gl-riG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~ 313 (426)
T 1sff_A 235 MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLK 313 (426)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred EEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCC-ceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH
Confidence 9999999999999998777778888899999999999998 999999999999988766677888999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccC-----CCchhHHHHHHHHHHcCceeccCC-
Q 012138 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-----ALPVSAYDICLKMKERGILAKPTH- 413 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gv~~~~~~- 413 (470)
.++++++.++++++++++++.|+++...+| .+..+++.|.++++.+... ..+.+..++++.|.++||++.++.
T Consensus 314 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 392 (426)
T 1sff_A 314 VFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP 392 (426)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC
Confidence 888778899999999999999998865564 5566677899999988421 001356789999999999998875
Q ss_pred -CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 414 -DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 -~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+++||++++.++++++++++++|+++++ +++
T Consensus 393 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~-~~~ 425 (426)
T 1sff_A 393 YYNVLRILVPLTIEDAQIRQGLEIISQCFD-EAK 425 (426)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHC
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHHHHHH-HHh
Confidence 68999999999999999999999999998 663
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-49 Score=392.22 Aligned_cols=384 Identities=32% Similarity=0.555 Sum_probs=319.6
Q ss_pred hHHHHHHHhhhcc---cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC
Q 012138 39 SQQLINLEYEYSA---HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY 115 (470)
Q Consensus 39 ~~~~~~~~~~~~~---~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~ 115 (470)
.+++++.+++|.+ ..+.++|+++++++|+++||.+|+.|||+.++.+.+++||.+|++.+++.++++.....+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~ 85 (395)
T 1vef_A 6 LEDWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLP 85 (395)
T ss_dssp ---CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSC
T ss_pred HHHHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccC
Confidence 4567777777765 6677889999999999999999999999999988788999999999999999987654433345
Q ss_pred CCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 116 NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
.+...++++++++++ +.+++++++||++|++.++++++.+. +++ .||+.+++||+....++...+.....
T Consensus 86 ~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~-------~~~-~vi~~~~~y~~~~~~~~~~~g~~~~~ 157 (395)
T 1vef_A 86 TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT-------GRK-KFVAAMRGFSGRTMGSLSVTWEPKYR 157 (395)
T ss_dssp CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH-------SCC-EEEEETTCCCCSSHHHHHTCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh-------CCC-eEEEEcCCcCCCchhhhhhcCCcccc
Confidence 667889999999998 56789999999999999999775321 344 68888999999887666665544333
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+.+...++..++++|+++|++++++ ++++|+++|++||+|.+.|+++++++|.++|++||++||+||+|+||++.
T Consensus 158 ~~~~p~~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~ 234 (395)
T 1vef_A 158 EPFLPLVEPVEFIPYNDVEALKRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRT 234 (395)
T ss_dssp GGGCSCSSCEEEECTTCHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cccCCCCCCeeEeCCCcHHHHHHHhcc---CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccC
Confidence 344555556677788899999999875 78999999999999998888999999999999999999999999999888
Q ss_pred CCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 353 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~ 353 (470)
|..+.++..++.+|+++|||++++|+ |+|++++++++++.+....+..+++.++++++++.++++.+.++++.++++++
T Consensus 235 g~~~~~~~~~~~~d~~s~sK~~~~g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 313 (395)
T 1vef_A 235 GKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAEL 313 (395)
T ss_dssp SSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CchhHhhhcCCCCCEEEEcccccCCC-ceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 87665666777899999999999998 99999999999998876556778889999999999999988777788899999
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCCCCEEEEecCCCCCHHHHHH
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~ 432 (470)
++++.+.|+++.. + .+...++.|.++++.+.. ...++++.|. ++||.+.+++.+++||++++.++++++++
T Consensus 314 ~~~l~~~l~~~~~--~-~~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~ 385 (395)
T 1vef_A 314 GPWFMEKLRAIPS--P-KIREVRGMGLMVGLELKE-----KAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLER 385 (395)
T ss_dssp HHHHHHHHHTSCC--T-TEEEEEEETTEEEEEESS-----CSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhc--C-ceEEEEEEEEEEEEEEcC-----hHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHH
Confidence 9999998877532 2 344566788888887753 2567899999 88999998878999999999999999999
Q ss_pred HHHHHHHHHh
Q 012138 433 GSKALHDVLE 442 (470)
Q Consensus 433 ~~~~l~~~l~ 442 (470)
++++|+++++
T Consensus 386 ~~~~l~~~l~ 395 (395)
T 1vef_A 386 VVEAVRAVLA 395 (395)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998864
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=372.46 Aligned_cols=371 Identities=36% Similarity=0.636 Sum_probs=307.1
Q ss_pred ccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh
Q 012138 51 AHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 51 ~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 130 (470)
...+.+.|+++++++|+++||.+|+.||||.++...+++||.+|++.+++.++++........+..+...++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~ 83 (375)
T 2eh6_A 4 MNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHF 83 (375)
T ss_dssp CSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTS
T ss_pred cccCcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhc
Confidence 44556789999999999999999999999999987778999999999999999987643323344455788999999999
Q ss_pred CC-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 131 GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 131 ~~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
|. +++++++||++|++.++++++.+ ..++ .+|++.|++.+++||+....+....+...+...+.+..+++..++++
T Consensus 84 g~~~~v~~~~g~t~a~~~~~~~~~~~--~~~~-~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T 2eh6_A 84 WTEGKVFFANSGTESVEAAIKLARKY--WRDK-GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLN 160 (375)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHH--HHHT-TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTT
T ss_pred CCCCeEEEeCchHHHHHHHHHHHHHH--hccC-CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCc
Confidence 88 89999999999999999875432 1000 14545899999999999887776665544334455555567778888
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV 289 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~ 289 (470)
|+++|++++++ ++++|+++|++||+|.+.++++++++|.++|++||++||+||+|++|++.+..+..+.++..+|++
T Consensus 161 d~~~l~~~l~~---~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~ 237 (375)
T 2eh6_A 161 DIDSVYKLLDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237 (375)
T ss_dssp CHHHHHTTCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred hHHHHHHHhcC---CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE
Confidence 99999998875 799999999999999998789999999999999999999999999998887665566677778999
Q ss_pred eccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 290 s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
+|||.+++|+ |+|++++++++++.+....++.+++.++++++++.++|+.+. ++.++++++++++.+.|+++.
T Consensus 238 s~SK~~~~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~---- 310 (375)
T 2eh6_A 238 ALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELG---- 310 (375)
T ss_dssp EECGGGGTTS-CCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT----
T ss_pred EEcccccCCC-CeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 999999999999988765567788899999999999888775 678888889999998887742
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
. ..+++.|.++++.+.. +..++++.|+++||.+.+++.+++||++++.++++++++++++|++++
T Consensus 311 -~-~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 311 -K-GKVKGRGLMLGLELER-----ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp -S-SEEEEETTEEEEECSS-----CCHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred -c-CCceEEEEEEEEEEcC-----cHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 1 3446778888887643 356789999999999998778999999999999999999999998764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=327.62 Aligned_cols=365 Identities=14% Similarity=0.102 Sum_probs=284.0
Q ss_pred chHHHHHHHhhhcccC-CCCCceEEE-eecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccCCC-
Q 012138 38 SSQQLINLEYEYSAHN-YHPVPIVFS-QAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSSRA- 113 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~-~~~~p~~~~-~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~- 113 (470)
.++++.++.+++.... ..+.+..+. +++|+++|| +|++||||.++ .++| +.||++.+++.++++.+......
T Consensus 26 ~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~ 101 (427)
T 2w8t_A 26 KFDGLIAERQKLLDSGVTDPFAIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGS 101 (427)
T ss_dssp GGHHHHHHHHHHHHTTCCCTTCCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSC
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCccc
Confidence 4667777766665554 344455677 999999999 99999999998 3567 68999999999999875432111
Q ss_pred ----CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 114 ----FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 114 ----~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
...+...+++++++++++.+.+++++||++|+..+++++.. +|+ .|++..++ |+.....+...+.
T Consensus 102 ~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~---------~gd-~vl~~~~~-h~~~~~~~~~~g~ 170 (427)
T 2w8t_A 102 RMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAG---------KGE-YVILDADS-HASIYDGCQQGNA 170 (427)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC---------TTC-EEEEETTC-CHHHHHHHHHSCS
T ss_pred ccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcC---------CCC-EEEECCcc-cHHHHHHHHHcCC
Confidence 13456789999999999999999999999999999887643 344 67666665 6666555544432
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC-CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 268 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~-~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~ 268 (470)
.+..++++|+++|++++++..+ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+
T Consensus 171 ------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~ 234 (427)
T 2w8t_A 171 ------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHS 234 (427)
T ss_dssp ------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred ------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 2356778899999999987543 7899999999999999997 9999999999999999999999
Q ss_pred CC--cccCCccccccCCCCcc----eeeccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHH
Q 012138 269 GL--ARSGRMLASDWEEVRPD----MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDV 340 (470)
Q Consensus 269 g~--g~~G~~~~~~~~~~~pd----i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~ 340 (470)
++ +++|..+ .+.+++.+| +.||||+++ . +.|++++++++++.+.... ...+++.++++++++.++|+.
T Consensus 235 ~~~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~g--~-~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~ 310 (427)
T 2w8t_A 235 MGFFGPNGRGV-YEAQGLEGQIDFVVGTFSKSVG--T-VGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRK 310 (427)
T ss_dssp TTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTC--S-CCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred ccccCCCCCch-HhhcCCCcCCcEEEecchhhhc--c-CCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence 63 4445443 444566555 569999996 3 6689999999998886542 233567899999999999998
Q ss_pred Hhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-ec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----
Q 012138 341 IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---- 413 (470)
Q Consensus 341 ~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---- 413 (470)
++. ++++++++++++++.+.|++++ +... .+ .|.++++.+... ....++++.|.++||++.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~Gi~v~~~~~~~~ 381 (427)
T 2w8t_A 311 LMTAHEKRERLWSNARALHGGLKAMG------FRLGTETCDSAIVAVMLEDQ---EQAAMMWQALLDGGLYVNMARPPAT 381 (427)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHT------CEESCSSCCSSEEEEEESSH---HHHHHHHHHHHHTTEECEEECTTTS
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHcC------CcccCCCCCCCEEEEEECCH---HHHHHHHHHHHHCCeEEeeeCCCCC
Confidence 876 6788999999999999998862 2222 34 677888877532 257889999999999987653
Q ss_pred ---CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 414 ---DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 414 ---~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.+++||+++..+|++++++++++|+++++ ++.+
T Consensus 382 ~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~-~~~~ 417 (427)
T 2w8t_A 382 PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGR-AVGV 417 (427)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHTC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH-HhCc
Confidence 36899999998999999999999999998 7543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.37 Aligned_cols=357 Identities=14% Similarity=0.153 Sum_probs=270.5
Q ss_pred CCCCCceEEEeecCCEEEeCC--CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh
Q 012138 53 NYHPVPIVFSQAKGSSIWDPE--GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF 130 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~--G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 130 (470)
.|...+++.++++|+++||.+ |+.||||..+ .+.++.+|+|.+++.++++...+.+.....++++++++++++.+
T Consensus 37 ~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~ 113 (421)
T 3l8a_A 37 RYDFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEH 113 (421)
T ss_dssp -CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 455567889999999999999 8999999777 44556899999999999987544333333556778888888876
Q ss_pred C----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCee
Q 012138 131 G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHL 204 (470)
Q Consensus 131 ~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~ 204 (470)
+ .++|++++||++|++.+++++.. +| +.|++..++||+........+... .. .++. .+.+
T Consensus 114 g~~~~~~~v~~~~g~~ea~~~a~~~~~~---------~g-d~Vi~~~~~y~~~~~~~~~~g~~~-~~---~~~~~~~~~~ 179 (421)
T 3l8a_A 114 DYAVVKEDILFIDGVVPAISIALQAFSE---------KG-DAVLINSPVYYPFARTIRLNDHRL-VE---NSLQIINGRF 179 (421)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHSC---------TE-EEEEEEESCCHHHHHHHHHTTEEE-EE---EECEEETTEE
T ss_pred CCCCCHHHEEEcCCHHHHHHHHHHHhcC---------CC-CEEEECCCCcHHHHHHHHHCCCEE-Ee---ccccccCCCe
Confidence 6 46799999999999999998754 34 478899999998766544433211 11 1110 1111
Q ss_pred eecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc----
Q 012138 205 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS---- 279 (470)
Q Consensus 205 ~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~---- 279 (470)
.+ |+++|++++++. ++++|++++++||+|.++ +++++++|+++|++||++||+||+|++++++|..+ .+
T Consensus 180 ~~---d~~~le~~i~~~--~~~~vil~~p~nptG~~~-~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 253 (421)
T 3l8a_A 180 EI---DFEQLEKDIIDN--NVKIYLLCSPHNPGGRVW-DNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLD 253 (421)
T ss_dssp EC---CHHHHHHHHHHT--TEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred ee---CHHHHHHHhhcc--CCeEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcC
Confidence 22 899999999842 789999888899999888 88899999999999999999999999998887532 11
Q ss_pred -ccCCCCcceeecccccc-CCCcceeEEEec-HHHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q 012138 280 -DWEEVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHL 353 (470)
Q Consensus 280 -~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~ 353 (470)
+..+..+++.++||+++ +|+ |+|+++++ +++++.+.... ...++++|+++++++.++++..++ +++.++++++
T Consensus 254 ~~~~~~~i~~~s~sK~~g~~G~-~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~ 332 (421)
T 3l8a_A 254 ASYKDFTIILSSATKTFNIAGT-KNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGN 332 (421)
T ss_dssp TTGGGTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhcCcEEEEEeChhhccCchh-heEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 22344567889999998 898 99999988 89988887654 334557999999999999885432 4566677777
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSI 425 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~ 425 (470)
++++.+.|+++ | .+..+++.|.++. +.+.... .+..++.+.|+++ ||++.++ +.+++||+++ +
T Consensus 333 ~~~l~~~L~~~----~-~i~~~~~~~~~~~~v~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~ 403 (421)
T 3l8a_A 333 IKLVIKELEAK----T-KIKVMEPEGTYLVWLDFSAYA--IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--T 403 (421)
T ss_dssp HHHHHHHHHHH----C-SCEEECCSBSSEEEEECGGGT--CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--S
T ss_pred HHHHHHHHHhC----C-CceEeCCCeeEEEEEeccccC--CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--C
Confidence 77777777665 2 5677788888887 5554311 2566889999765 9999874 3689999976 6
Q ss_pred CHHHHHHHHHHHHHHHh
Q 012138 426 SSNELQEGSKALHDVLE 442 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~ 442 (470)
++++|++++++|+++++
T Consensus 404 ~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 404 PKNTVQEALSRIISVFG 420 (421)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=311.28 Aligned_cols=351 Identities=18% Similarity=0.245 Sum_probs=274.5
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccCC--CC---CCCcHHHHHHH
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSSR--AF---YNDKFPVFAER 125 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~l~~~ 125 (470)
....+.+..+++++|.++|| +|++||||.++ .++| +++|++.+++.++++.+...+. .+ ..+...+++++
T Consensus 21 ~~~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 96 (399)
T 3tqx_A 21 AGLYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKD 96 (399)
T ss_dssp TTCCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHH
T ss_pred cCCccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHH
Confidence 34445677889999999999 99999999998 5677 6899999999999987654321 11 23447899999
Q ss_pred HhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 126 LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 126 l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
++++++.+..+++++|++|+..+++.+.. +++ .|++..++ |+.........+. .+..
T Consensus 97 la~~~~~~~~i~~~sGt~a~~~~l~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~------------~~~~ 153 (399)
T 3tqx_A 97 ISEFLGTDDTILYSSCFDANGGLFETLLG---------PED-AIISDELN-HASIIDGIRLCKA------------QRYR 153 (399)
T ss_dssp HHHHHTCSEEEEESCHHHHHHTTHHHHCC---------TTC-EEEEETTC-CHHHHHHHHSCCS------------EEEE
T ss_pred HHHHHCCCcEEEECchHHHHHHHHHHhcC---------CCC-EEEECCcc-cHHHHHHHHHcCC------------ceeE
Confidence 99999988888888999999999887643 344 77777776 4554444444332 1356
Q ss_pred ecCCCHHHHHHHHHhcCC---CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCccccc
Q 012138 206 VDFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLASD 280 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~---~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~~ 280 (470)
+++.|+++|++++++... ++++|++++++||+|.+.| +++|.++|++||++||+||+|+ |+ +..+.. ..+
T Consensus 154 ~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~ 228 (399)
T 3tqx_A 154 YKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPE 228 (399)
T ss_dssp ECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHH
T ss_pred eCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHH
Confidence 677799999999987533 7899999999999999997 9999999999999999999995 54 444443 244
Q ss_pred cCCC--Cccee--eccccccCCCcceeEEEecHHHHhhcCcCCc--cCCCCCCHHHHHHHHHHHHHH-h-hhhHHHHHHH
Q 012138 281 WEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVI-R-DEKLAERSAH 352 (470)
Q Consensus 281 ~~~~--~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~~-~-~~~~~~~~~~ 352 (470)
.+++ .+|++ ++||+++ |+ +.|++++++++++.+..... ..+.+.++++++++.++++.+ + .+++++++++
T Consensus 229 ~~~~~~~~di~~~s~sK~~~-g~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (399)
T 3tqx_A 229 YCGVADRVDILTGTLGKALG-GA-SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQE 306 (399)
T ss_dssp HHTCTTCCSEEEEESSSSSC-SS-CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhCCCCCCcEEEecchHhcc-cC-ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4554 67887 9999999 66 88999999999988865322 223468899999999999887 3 2678889999
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-------CCCEEEEecCCCC
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSI 425 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~~~~iR~~~~~~~ 425 (470)
+++++.+.|++++. ...++.|.++++.+... .+..++++.|.++||.+.++ +.+++||+++..+
T Consensus 307 ~~~~l~~~L~~~g~------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~ 377 (399)
T 3tqx_A 307 NSRYFRAGMEKLGF------QLVPGNHPIIPVMLGDA---QLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVH 377 (399)
T ss_dssp HHHHHHHHHHHHTC------CBCCCSSSEEEEEEECH---HHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCC------CcCCCCCCEEEEEeCCH---HHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCC
Confidence 99999999988732 22367888888877543 26789999999999998743 3469999999899
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+++++++++++|+++++ ++.
T Consensus 378 ~~~~i~~~~~~l~~~~~-~~~ 397 (399)
T 3tqx_A 378 TQQQLDRAIEAFGQVGK-KLG 397 (399)
T ss_dssp CHHHHHHHHHHHHHHHH-HTT
T ss_pred CHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999998 753
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=304.76 Aligned_cols=351 Identities=18% Similarity=0.273 Sum_probs=271.1
Q ss_pred CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC--CC---CCCcHHHHHHHH
Q 012138 53 NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR--AF---YNDKFPVFAERL 126 (470)
Q Consensus 53 ~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~l~~~l 126 (470)
...+.|.++.+++|+++||.+|+.||||.++ .++|+ ++|++.+++.++++.+..... .+ ..+...++++.+
T Consensus 23 ~~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 99 (401)
T 1fc4_A 23 GLFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL 99 (401)
T ss_dssp TCCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred CCeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHH
Confidence 3445788899999999999999999999988 46886 899999999999987543221 11 145578899999
Q ss_pred hhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeee
Q 012138 127 TSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV 206 (470)
Q Consensus 127 ~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (470)
++++|.+..+++++|++|+..+++++.. +++ .|++..++ |+.....+...+. .+..+
T Consensus 100 a~~~g~~~~i~~~sGs~a~~~~~~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~------------~~~~~ 156 (401)
T 1fc4_A 100 AAFLGMEDAILYSSCFDANGGLFETLLG---------AED-AIISDALN-HASIIDGVRLCKA------------KRYRY 156 (401)
T ss_dssp HHHHTCSEEEEESCHHHHHHTTHHHHCC---------TTC-EEEEETTC-CHHHHHHHHTSCS------------EEEEE
T ss_pred HHHhCCCcEEEeCChHHHHHHHHHHHcC---------CCC-EEEEcchh-HHHHHHHHHHcCC------------ceEEE
Confidence 9999988888889999999998887643 444 67666666 5554444433331 13456
Q ss_pred cCCCHHHHHHHHHhcCC---CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCc-ccCCcccccc
Q 012138 207 DFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA-RSGRMLASDW 281 (470)
Q Consensus 207 ~~~d~~~Le~~l~~~~~---~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g-~~G~~~~~~~ 281 (470)
++.|+++|++++++..+ ++++|++++++||+|.+.+ +++|.++|++||++||+||+|+ |+. ++|..+ .+.
T Consensus 157 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~ 231 (401)
T 1fc4_A 157 ANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEY 231 (401)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHH
T ss_pred CCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHH
Confidence 66799999999976322 5789998888999999997 9999999999999999999996 873 456543 222
Q ss_pred CCCC--ccee--eccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 012138 282 EEVR--PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLG 354 (470)
Q Consensus 282 ~~~~--pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 354 (470)
.++. .|++ ++||.++|+. .|++++++++++.+.... ...+++.++++++++.++++.+.+ +++.+++++++
T Consensus 232 ~~~~~~~di~~~s~sK~~~~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 309 (401)
T 1fc4_A 232 CDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANA 309 (401)
T ss_dssp TTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCcCCcEEEecchhhccCCC--CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3433 3666 9999997764 489999999988876433 223567899999999999998764 67888999999
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCCCH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISS 427 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~t~ 427 (470)
+++.+.|++++ ++ . ..+.|.++++.+... .+..++.+.|.++||.+.++. .+++||+++..+++
T Consensus 310 ~~l~~~L~~~g--~~-~---~~~~~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~ 380 (401)
T 1fc4_A 310 RQFREQMSAAG--FT-L---AGADHAIIPVMLGDA---VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTP 380 (401)
T ss_dssp HHHHHHHHHTT--CC-B---CCSSSSEEEEEEECH---HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCH
T ss_pred HHHHHHHHHcC--Cc-c---cCCCCCEEEEEcCCh---HHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCH
Confidence 99999998762 21 2 246788888877532 367789999999999987653 35899999888999
Q ss_pred HHHHHHHHHHHHHHhcccC
Q 012138 428 NELQEGSKALHDVLELDLP 446 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~ 446 (470)
+++++++++|+++++ ++.
T Consensus 381 ~~i~~~~~~l~~~~~-~~~ 398 (401)
T 1fc4_A 381 EQITRAVEAFTRIGK-QLG 398 (401)
T ss_dssp HHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHH-HhC
Confidence 999999999999998 764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=306.08 Aligned_cols=355 Identities=15% Similarity=0.166 Sum_probs=262.6
Q ss_pred eEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC----CCe
Q 012138 59 IVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDM 134 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 134 (470)
++.++++|+++||.+|++||||..+ .+..+.+|++.+++.++++...+.+.....++++++++++++.++ .++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6778899999999999999999987 344558999999999998764332222234556778888887766 568
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDIT 212 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~ 212 (470)
+++++||++|++.+++.+.. +|+ .|++..++||+........+... . +.+.. .+...+ |++
T Consensus 88 i~~~~g~~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~~~~---d~~ 150 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFTS---------PGD-QILVQEPVYNMFYSVIEGNGRRV-I---SSDLIYENSKYSV---NWA 150 (391)
T ss_dssp EEEESCHHHHHHHHHHHHSC---------TTC-EEEECSSCCHHHHHHHHHTTCEE-E---ECCCEEETTEEEC---CHH
T ss_pred EEECCCHHHHHHHHHHHhCC---------CCC-eEEECCCCcHHHHHHHHHcCCEE-E---EeeeeecCCceee---cHH
Confidence 99999999999999998743 454 88899999987655444332211 1 11110 111112 899
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCC-Ccc---
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEV-RPD--- 287 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~-~pd--- 287 (470)
+|++++++. ++++|+++.++||+|.++ +++.+++|.++|++||++||+||+|+++.+.|.. ......+. .+|
T Consensus 151 ~l~~~l~~~--~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i 227 (391)
T 3dzz_A 151 DLEEKLATP--SVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVV 227 (391)
T ss_dssp HHHHHHTST--TEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEE
T ss_pred HHHHHHhcc--CceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEE
Confidence 999999742 788888777799999999 8888999999999999999999999988877743 23333332 267
Q ss_pred -eeecccccc-CCCcceeEEEec-HHHHhhcCcCCc-cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Q 012138 288 -MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 288 -i~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L 361 (470)
+.++||.++ +|+ |+|+++++ +++++.+..... ..+++.++++++++.++++...+ +.+.++.+++.+++.+.|
T Consensus 228 ~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 306 (391)
T 3dzz_A 228 SLISPSKTFNLAAL-HAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFL 306 (391)
T ss_dssp EEECSHHHHTCTTT-CCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeChhhccccch-hheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999998 898 99999997 888888765432 34567889999999888876332 456666777777777777
Q ss_pred HHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHH
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~ 433 (470)
++. +| .+....+.+.++. +.+.... .+..++.+.|+ ++||.+.++. .+++|++++ +++++++++
T Consensus 307 ~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~ 378 (391)
T 3dzz_A 307 AKE---VP-EVKVLDSNASYLAWVDISALG--MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDG 378 (391)
T ss_dssp HHH---CT-TSEECCCCBSSEEEEECGGGC--SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHH
T ss_pred Hhh---CC-CcEEeccCceEEEEEehhhcC--CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHH
Confidence 663 22 3444455666555 5454321 36788999996 7899998753 489999965 799999999
Q ss_pred HHHHHHHHhcccC
Q 012138 434 SKALHDVLELDLP 446 (470)
Q Consensus 434 ~~~l~~~l~~~~~ 446 (470)
+++|.++++ +++
T Consensus 379 l~~l~~~l~-~~~ 390 (391)
T 3dzz_A 379 MQRLKQGVL-NLN 390 (391)
T ss_dssp HHHHHHHHH-TCC
T ss_pred HHHHHHHHH-Hhh
Confidence 999999998 764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=303.27 Aligned_cols=343 Identities=15% Similarity=0.146 Sum_probs=254.8
Q ss_pred EEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc-cCCCCCCCcHHHHHHHHhhhhC----CCeE
Q 012138 61 FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-SSRAFYNDKFPVFAERLTSMFG----YDMV 135 (470)
Q Consensus 61 ~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~----~~~v 135 (470)
..+++|+++||.+|++||||.++. +..+.+|++.+++.++++...+ ++... .++++.+++++.+.++ .+++
T Consensus 9 ~~~~~g~~~~d~~g~~~idl~~~~---~~~~~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 9 DLRARNTMKWTRYGQGVLPLWVAE---SDFSTCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHTCCHHHHSSCTTSEECCSSC---CCSCCCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HhcCCCCceeeccCCCeeeecccC---CCCCCCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHHE
Confidence 348999999999999999999884 3334899999999999976322 22222 6677788888776643 4689
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC---CHH
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---DIT 212 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~ 212 (470)
++|+||++|++.+++.+.. +|+ .|++..++|++........+.. +..++.+ |++
T Consensus 85 ~~t~g~~~a~~~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~ 141 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHFTP---------AQS-KVIVPTPAYPPFFHLLSATQRE-------------GIFIDATGGINLH 141 (377)
T ss_dssp EEESCHHHHHHHHHHHHSC---------TTC-CEEEEESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHH
T ss_pred EEeCChHHHHHHHHHHhcC---------CCC-EEEEcCCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHH
Confidence 9999999999999997754 454 7888999998766544433322 1233332 899
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC-Cc----cccccCCCCcc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG-RM----LASDWEEVRPD 287 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G-~~----~~~~~~~~~pd 287 (470)
+|++++++ ++++++++.++||+|.++ +.+++++|+++|++||+++|+||+|+++.+.| .. ..++..+..++
T Consensus 142 ~l~~~l~~---~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~ 217 (377)
T 3fdb_A 142 DVEKGFQA---GARSILLCNPYNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCIT 217 (377)
T ss_dssp HHHHHHHT---TCCEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEE
T ss_pred HHHHHhcc---CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEE
Confidence 99999987 456666555599999999 88889999999999999999999999987777 22 12212222345
Q ss_pred eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 288 i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
+.++||.++ +|+ |+|+++. ++++++.+.......+++.++++++++.++++..++ ++..++++++++++.+.|++
T Consensus 218 ~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 218 ITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp EECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 679999996 888 9998775 788888887666666788999999999988876432 45666777777777777766
Q ss_pred HHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHc-CceeccCC------CCEEEEecCCCCCHHHHHHHHH
Q 012138 364 IQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 364 l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
. +| .+....+.+.++. +.+.... ...++++.|+++ ||.+.|+. .+++|++++ .++++++++++
T Consensus 297 ~---~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~ 367 (377)
T 3fdb_A 297 R---IP-GAKITPMQATYLMWIDFRDTT---IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAID 367 (377)
T ss_dssp H---ST-TCEECCCSBCSEEEEECTTSC---CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHH
T ss_pred h---CC-CceEecCCeeEEEEEECcccC---CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHH
Confidence 3 22 3445566666664 5554322 124677788776 99998753 689999965 58999999999
Q ss_pred HHHHHHhccc
Q 012138 436 ALHDVLELDL 445 (470)
Q Consensus 436 ~l~~~l~~~~ 445 (470)
+|.++++ ++
T Consensus 368 ~l~~~l~-~~ 376 (377)
T 3fdb_A 368 RMAKAVS-HH 376 (377)
T ss_dssp HHHHHHT-TC
T ss_pred HHHHHHh-hc
Confidence 9999998 64
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=295.86 Aligned_cols=346 Identities=14% Similarity=0.179 Sum_probs=264.7
Q ss_pred CCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhh
Q 012138 56 PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSM 129 (470)
Q Consensus 56 ~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~ 129 (470)
+.|+++++++|.++| .+|+.++||.++. ++|+ .+|++.+++.++++....... ....+.+.+++++++++
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNS---YLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCSC---TTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeeccc---ccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 478889999999999 8999999999883 3566 789999999999876543211 12346688999999999
Q ss_pred hCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 130 FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 130 ~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
++.+++++++||++|++.+++++.. +|+ .|++..++| +.....+...+.. +..+++.
T Consensus 101 ~g~~~v~~~~ggt~a~~~~~~~~~~---------~gd-~V~~~~p~~-~~~~~~~~~~g~~------------~~~v~~~ 157 (398)
T 3a2b_A 101 VGKEAAILFSTGFQSNLGPLSCLMG---------RND-YILLDERDH-ASIIDGSRLSFSK------------VIKYGHN 157 (398)
T ss_dssp HTCSEEEEESSHHHHHHHHHHHSSC---------TTC-EEEEETTCC-HHHHHHHHHSSSE------------EEEECTT
T ss_pred hCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEECCccC-HHHHHHHHHcCCc------------eEEeCCC
Confidence 9999999999999999999987743 444 777788775 4444444433321 3456667
Q ss_pred CHHHHHHHHHhcCC-CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCC-
Q 012138 210 DITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVR- 285 (470)
Q Consensus 210 d~~~Le~~l~~~~~-~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~- 285 (470)
|+++|++++++..+ ++++|++++++||+|.+.+ +++|.++|++||++||+||+|+. +++.+..+ .+.+++.
T Consensus 158 d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~ 232 (398)
T 3a2b_A 158 NMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLND 232 (398)
T ss_dssp CHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGG
T ss_pred CHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCc
Confidence 99999999987432 6889998888999999997 99999999999999999999974 34444433 2333432
Q ss_pred -ccee--eccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Q 012138 286 -PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQ 359 (470)
Q Consensus 286 -pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~ 359 (470)
+|++ +|||.++. +.|++++++++++.+.... ...+...++..++++.++|+.++. ++++++++++++++.+
T Consensus 233 ~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 233 DVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp GCSEEEEESSSTTCS---SCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CCeEEEecccccccC---CCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4776 99999983 1178999999988876532 344555777777777788887644 5688888999999999
Q ss_pred HHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCCCHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~ 432 (470)
.|++++ + ....+.|.++++.+... .+..++++.|.++||.+.++. .+++|++++..++++++++
T Consensus 310 ~L~~~g--~----~~~~~~g~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~ 380 (398)
T 3a2b_A 310 QLLDHG--F----DLGATESPILPIFIRSN---EKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDE 380 (398)
T ss_dssp HHHHTT--C----CBCSCCSSEEEEECCCH---HHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHH
T ss_pred HHHhcC--C----CcCCCCCCEEEEEcCCH---HHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHH
Confidence 998752 2 22345678877766431 367889999999999998753 4789999888889999999
Q ss_pred HHHHHHHHHhcccC
Q 012138 433 GSKALHDVLELDLP 446 (470)
Q Consensus 433 ~~~~l~~~l~~~~~ 446 (470)
++++|+++++ ++.
T Consensus 381 ~~~~l~~~l~-~~~ 393 (398)
T 3a2b_A 381 AIEKMVKVFK-QAE 393 (398)
T ss_dssp HHHHHHHHHH-HCC
T ss_pred HHHHHHHHHH-HhC
Confidence 9999999998 763
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=291.64 Aligned_cols=349 Identities=20% Similarity=0.250 Sum_probs=264.0
Q ss_pred hhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCC-CCCHHHHHHHHHHHHHccccC--CC---CCCCcHHH
Q 012138 48 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQG-HCHPKIMKALQEQAEKLTLSS--RA---FYNDKFPV 121 (470)
Q Consensus 48 ~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~--~~---~~~~~~~~ 121 (470)
+.....+.+.|.++.+++|+++| .+|+.||||.++. ++| +.+|++.+++.++++.....+ .. ...+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (384)
T 1bs0_A 13 ARRAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQA 88 (384)
T ss_dssp HCCGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHH
T ss_pred HHHhcCCccccccccCCCCceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHH
Confidence 33344455678889999999999 7999999999873 356 589999999999998743211 11 13356789
Q ss_pred HHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC
Q 012138 122 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP 201 (470)
Q Consensus 122 l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 201 (470)
+++.+++++|.+.++++++|++|+..+++.+.. +|+ .|++..+. |+.....+...+..
T Consensus 89 l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~---------~gd-~v~~~~~~-~~~~~~~~~~~g~~----------- 146 (384)
T 1bs0_A 89 LEEELAEWLGYSRALLFISGFAANQAVIAAMMA---------KED-RIAADRLS-HASLLEAASLSPSQ----------- 146 (384)
T ss_dssp HHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC---------TTC-EEEEETTC-CHHHHHHHHTSSSE-----------
T ss_pred HHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCC---------CCc-EEEEcccc-cHHHHHHHHHcCCC-----------
Confidence 999999999988888999999999999987643 344 66666655 66655555444321
Q ss_pred CeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC-cccCCcccc
Q 012138 202 GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL-ARSGRMLAS 279 (470)
Q Consensus 202 ~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~-g~~G~~~~~ 279 (470)
+..+|+.|+++|++++++..+++++|++++++||+|.+.| +++|.++|++||++||+||+|+ ++ +++|..+ .
T Consensus 147 -~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~ 220 (384)
T 1bs0_A 147 -LRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-C 220 (384)
T ss_dssp -EEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-H
T ss_pred -EEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-H
Confidence 3566777999999999875334788888888999999997 9999999999999999999997 43 4455543 2
Q ss_pred ccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHH
Q 012138 280 DWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAH 352 (470)
Q Consensus 280 ~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~ 352 (470)
+.++..+|++ ++||.++. +.|++++++++++.+.... ...+.+.++++++++.++++.+.+ +++.+++++
T Consensus 221 ~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 297 (384)
T 1bs0_A 221 WLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAA 297 (384)
T ss_dssp HHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HhcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4455567887 99999973 4488999999988776432 223346899999999999988762 467788888
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------CCEEEEecCCCC
Q 012138 353 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSI 425 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------~~~iR~~~~~~~ 425 (470)
+++++.+.|++++ +....+.|.++++.+... .+..++.+.|.++||.+.++. .+++||+++..+
T Consensus 298 ~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 298 LITRFRAGVQDLP------FTLADSCSAIQPLIVGDN---SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp HHHHHHHHHTTSS------CEECSCCSSBCCEEEESH---HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred HHHHHHHHHHhcC------CcccCCCCCEEEEEeCCH---HHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 8888888887641 222236677777766432 367889999999999998652 378999999888
Q ss_pred CHHHHHHHHHHHHHH
Q 012138 426 SSNELQEGSKALHDV 440 (470)
Q Consensus 426 t~e~i~~~~~~l~~~ 440 (470)
+++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=299.41 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=260.3
Q ss_pred EeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC-----CCCCCcHHHHHHHHhhhhCCCeE
Q 012138 62 SQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMV 135 (470)
Q Consensus 62 ~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~v 135 (470)
.++.+.+++|.+|++||||.++ ..+|. .||++.+++.++++++..... ....+...+++++++++++.+..
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~ 122 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDEC 122 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEE
T ss_pred cCCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeE
Confidence 4677888899999999999887 33444 689999999999987543211 12346678899999999999988
Q ss_pred EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHH
Q 012138 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALE 215 (470)
Q Consensus 136 ~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le 215 (470)
+++++|++|+..+++++.. +|+ .|++..+. |+....++...+.. ...++++|+++|+
T Consensus 123 i~~~sGt~a~~~~l~~~~~---------~gd-~Vl~~~~~-~~~~~~~~~~~g~~------------~~~~~~~d~~~le 179 (409)
T 3kki_A 123 LLSQSGWNANVGLLQTICQ---------PNT-NVYIDFFA-HMSLWEGARYANAQ------------AHPFMHNNCDHLR 179 (409)
T ss_dssp EEESCHHHHHHHHHHHHCC---------TTC-EEEEETTS-CHHHHHHHHHTTCE------------EEEECTTCHHHHH
T ss_pred EEecchHHHHHHHHHHhcC---------CCC-EEEECCCc-CHHHHHHHHHcCCe------------EEEecCCCHHHHH
Confidence 8999999999999987753 454 67766666 55555544444321 2456667999999
Q ss_pred HHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCC--Ccce--e
Q 012138 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEV--RPDM--V 289 (470)
Q Consensus 216 ~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~--~pdi--~ 289 (470)
+++++. ++++|++++++||+|.+.| +++|.++|++||++||+||+|++ ++++|..+. ..+++ .+|+ .
T Consensus 180 ~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~ 252 (409)
T 3kki_A 180 MLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTA 252 (409)
T ss_dssp HHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEE
T ss_pred HHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEe
Confidence 999874 4689999999999999997 99999999999999999999997 777776653 33444 3566 6
Q ss_pred eccccccCCCcceeEEEecHHHHhhcCcCCccC--CCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 290 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--TFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 290 s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
|+||++++| .|++++++++++.+....... +.+.++++++++.++++.+++ +.++++++++++++.+.|++++.
T Consensus 253 s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (409)
T 3kki_A 253 SLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGL 329 (409)
T ss_dssp ESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ecchhhCCC---ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999865 488999998888775432222 223688899999999998766 57888889999999999887632
Q ss_pred hCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 367 QFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
. +.+.+.++++.+... .+..++++.|.++||++.+ .+.+++||+++..+|+++|++++++|++
T Consensus 330 ~-------~~~~~~~~~~~~~~~---~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 399 (409)
T 3kki_A 330 T-------IRSESQIIGLETGDE---RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSD 399 (409)
T ss_dssp C-------CCCSSSEEEEEEESH---HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred c-------cCCCCCEEEEEeCCH---HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1 125777888777543 2567899999999999853 3467999999999999999999999999
Q ss_pred HHhccc
Q 012138 440 VLELDL 445 (470)
Q Consensus 440 ~l~~~~ 445 (470)
+++ ..
T Consensus 400 ~l~-~~ 404 (409)
T 3kki_A 400 AVN-YG 404 (409)
T ss_dssp HHH-HS
T ss_pred HHh-cC
Confidence 998 53
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=297.63 Aligned_cols=351 Identities=15% Similarity=0.127 Sum_probs=255.2
Q ss_pred ceEEEeecCCEEEeCCCCe-----EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-
Q 012138 58 PIVFSQAKGSSIWDPEGNK-----YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG- 131 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~~-----~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 131 (470)
.++.++++|+++||.+|++ ++||..+ .+..+.+|++.+++.++++...+.......++++++++++++.++
T Consensus 10 ~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 10 EIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp SCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3456789999999998654 4999887 344558899999999999764333322345667888888888876
Q ss_pred ---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC---CCeee
Q 012138 132 ---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL---PGHLK 205 (470)
Q Consensus 132 ---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 205 (470)
.+++++++||++|++.+++.+.. +|+ .|++..++|++........+... .. .+.. .+...
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~~---~~~~~~~~~~~~ 152 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINELTK---------AND-KIMIQEPVYSPFNSVVKNNNREL-II---SPLQKLENGNYI 152 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHSC---------TTC-EEEECSSCCTHHHHHHHHTTCEE-EE---CCCEECTTSCEE
T ss_pred CCcHHHeEEcCChHHHHHHHHHHhCC---------CCC-EEEEcCCCCHHHHHHHHHcCCeE-Ee---eeeeecCCCceE
Confidence 46899999999999999998754 354 78889999988665544333211 11 1111 11122
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC--
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE-- 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~-- 282 (470)
+ |+++|++++++ +++|+++.++||+|.++ +.+.+++|.++|++||++||+||+|+++.+.|... .+...
T Consensus 153 ~---d~~~l~~~l~~----~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 224 (391)
T 4dq6_A 153 M---DYEDIENKIKD----VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISK 224 (391)
T ss_dssp C---CHHHHHHHCTT----EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred e---eHHHHHHHhhc----CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCc
Confidence 3 89999998864 77777666699999999 88889999999999999999999999987776532 12211
Q ss_pred ---CCCcceeecccccc-CCCcceeEEEecH-HHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Q 012138 283 ---EVRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLG 354 (470)
Q Consensus 283 ---~~~pdi~s~sK~l~-gG~~~ig~v~~~~-~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~ 354 (470)
+....+.|+||.++ +|+ |+|++++++ ++++.+.... ...+++.++++++++.++++..++ +...++++++.
T Consensus 225 ~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (391)
T 4dq6_A 225 EFEKNTITCMAPTKTFNIAGL-QSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNI 303 (391)
T ss_dssp HHHHTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEechhhccCccc-ceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 11234568999998 888 999999875 8888776542 334567899999999888876332 44556666666
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCC
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSIS 426 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t 426 (470)
+++.+.|++. +| .+....+.+.++. +.+.... .+..++++.|.++ ||.+.++ ..+++|++++ ++
T Consensus 304 ~~l~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~ 375 (391)
T 4dq6_A 304 DFAIKYINEN---MP-KLKVRKPEGTYLLWVDFSALG--LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CP 375 (391)
T ss_dssp HHHHHHHHHH---CT-TSEECCCSBSSEEEEECGGGC--CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SC
T ss_pred HHHHHHHHhh---CC-CCEecCCCccEEEEEEhhhcC--CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CC
Confidence 7776666552 22 3555566777666 5554311 2678899999999 9999764 2589999965 79
Q ss_pred HHHHHHHHHHHHHHHh
Q 012138 427 SNELQEGSKALHDVLE 442 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~ 442 (470)
++++++++++|.++++
T Consensus 376 ~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 376 RSMLEEALIRIKNAIN 391 (391)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998874
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=290.68 Aligned_cols=353 Identities=14% Similarity=0.124 Sum_probs=235.0
Q ss_pred eEEEeecCCEEEeCCCC-----eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC-cHHHHHHHHhhhhC-
Q 012138 59 IVFSQAKGSSIWDPEGN-----KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND-KFPVFAERLTSMFG- 131 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~-----~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~- 131 (470)
++-++++|+++||.+|+ .+|||..+.. +++ .+|++.+++.++++.....+.....+ +++++++++.+.+|
T Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~ 83 (390)
T 1d2f_A 7 VVDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYT 83 (390)
T ss_dssp -----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCC
Confidence 34578999999999997 7899987754 355 78999999999986522111111344 56666766665544
Q ss_pred ---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeee
Q 012138 132 ---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKV 206 (470)
Q Consensus 132 ---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 206 (470)
.++|++++||++|++.+++++.. +|+ .|++..++||+........+.. ... .+..++ .+.
T Consensus 84 ~~~~~~v~~t~g~~~al~~~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~~- 148 (390)
T 1d2f_A 84 AIDSQTVVYGPSVIYMVSELIRQWSE---------TGE-GVVIHTPAYDAFYKAIEGNQRT-VMP---VALEKQADGWF- 148 (390)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHSSC---------TTC-EEEEEESCCHHHHHHHHHTTCE-EEE---EECEECSSSEE-
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHhcC---------CCC-EEEEcCCCcHHHHHHHHHCCCE-EEE---eecccCCCccc-
Confidence 46799999999999999997643 454 8888999999876554333221 110 011000 011
Q ss_pred cCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCc
Q 012138 207 DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 286 (470)
Q Consensus 207 ~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~p 286 (470)
.|+++|++++++. ++++|++..++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|..+. ....+.+
T Consensus 149 --~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~ 222 (390)
T 1d2f_A 149 --CDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVAR 222 (390)
T ss_dssp --CCHHHHHHHHTST--TEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCC
T ss_pred --cCHHHHHHHhccC--CCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcch
Confidence 2899999999753 678887555599999998 889999999999999999999999998877765321 1112222
Q ss_pred ---c-eeecccccc-CCCcceeEEEec-HHHHhhcCcCCc-cCCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Q 012138 287 ---D-MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GSTF-GGNPLASAVAIASLDVIRD--EKLAERSAHLGEE 356 (470)
Q Consensus 287 ---d-i~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~-~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~ 356 (470)
| +.++||.++ +|+ |+|+++++ +++++.+..... ..++ +.++++++++.++++..++ +...+++++++++
T Consensus 223 ~~~d~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 301 (390)
T 1d2f_A 223 GDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTY 301 (390)
T ss_dssp SSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhHhhccCccHhhcccCh-hheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3 889999998 898 99999985 788887765444 4565 6899999998888875322 3455566667777
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeE-EEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSN 428 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e 428 (470)
+.+.|++. +| .+...++.|.++ ++.+.... .+..++.+.|. ++||.+.++. .+++|++++. +++
T Consensus 302 l~~~L~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~ 373 (390)
T 1d2f_A 302 IADKMNAA---FP-ELNWQIPQSTYLAWLDLRPLN--IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRS 373 (390)
T ss_dssp HHHHHHHH---CS-SCCCCCCSBCSEEEEECGGGC--CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHH
T ss_pred HHHHHHhh---CC-CCEEecCCccEEEEEEccccC--CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHH
Confidence 77766652 22 233345666555 45554321 25678999999 5799998752 5799999664 689
Q ss_pred HHHHHHHHHHHHHhccc
Q 012138 429 ELQEGSKALHDVLELDL 445 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~ 445 (470)
++++++++|.++++ ++
T Consensus 374 ~l~~~l~~l~~~l~-~~ 389 (390)
T 1d2f_A 374 KLEKGVAGLINAIR-AV 389 (390)
T ss_dssp HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHH-hh
Confidence 99999999999987 64
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=292.10 Aligned_cols=356 Identities=14% Similarity=0.130 Sum_probs=249.3
Q ss_pred eEEEeecCCEEEeCCCC-------eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC
Q 012138 59 IVFSQAKGSSIWDPEGN-------KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 131 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~-------~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 131 (470)
++.++++|+++||.+|+ .++||.++.. +++ .+|.+.+++.++++.....+.....++++.+++++.+.+|
T Consensus 8 ~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g 84 (399)
T 1c7n_A 8 KISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQ 84 (399)
T ss_dssp CCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 34568999999998873 7899988753 244 7899999999998753221111123344555555554445
Q ss_pred ----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-C-Ceee
Q 012138 132 ----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-P-GHLK 205 (470)
Q Consensus 132 ----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 205 (470)
.++|++|+||++|++.+++++.. +|+ .|++..++||+........+. ... +.+.. . +.+.
T Consensus 85 ~~~~~~~v~~t~g~~~a~~~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~g~-~~~---~~~~~~~~g~~~ 150 (399)
T 1c7n_A 85 WDIQTDWIINTAGVVPAVFNAVREFTK---------PGD-GVIIITPVYYPFFMAIKNQER-KII---ECELLEKDGYYT 150 (399)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHCC---------TTC-EEEECSSCCTHHHHHHHTTTC-EEE---ECCCEEETTEEE
T ss_pred CCCChhhEEEcCCHHHHHHHHHHHhcC---------CCC-EEEEcCCCcHhHHHHHHHcCC-EEE---ecccccCCCCEE
Confidence 46799999999999999997743 454 788899999987655443322 111 11111 0 0112
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC--
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE-- 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~-- 282 (470)
+ |+++|++++++. ++++|++..++||+|.++ +++++++|.++|++||++||+||+|+++.+.|.. ..+..+
T Consensus 151 ~---d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 224 (399)
T 1c7n_A 151 I---DFQKLEKLSKDK--NNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDE 224 (399)
T ss_dssp C---CHHHHHHHHTCT--TEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred E---cHHHHHHHhccC--CCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCc
Confidence 2 899999999742 788888666699999998 8999999999999999999999999988776642 222222
Q ss_pred ---CCCcceeecccccc-CCCcceeEEEec-HHHHhhcCcCCccCCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Q 012138 283 ---EVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD--EKLAERSAHLG 354 (470)
Q Consensus 283 ---~~~pdi~s~sK~l~-gG~~~ig~v~~~-~~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~ 354 (470)
+....+.++||.++ +|+ |+|+++++ +++++.+.......++ +.++++++++.++|+...+ +...+++++++
T Consensus 225 ~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (399)
T 1c7n_A 225 QLADKTITFTAPSKTFNIAGM-GMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQ 303 (399)
T ss_dssp HHHTTEEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEeChhhccccch-heEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 22234569999998 898 99999986 6788887654444444 5789999998888875321 34555566666
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCC
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSIS 426 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t 426 (470)
+++.+.|++. +| .+...++.|.++. +.+.... .+..++++.|+ ++||.+.|+ ..+++||+++. +
T Consensus 304 ~~l~~~L~~~---~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~ 375 (399)
T 1c7n_A 304 RIVKDFFEVN---HP-EIKAPLIEGTYLQWIDFRALK--MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--P 375 (399)
T ss_dssp HHHHHHHHHH---CT-TSBCCCCSBSSEEEEECGGGC--CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--C
T ss_pred HHHHHHHHhh---CC-CCeEecCCceEEEEEEcccCC--CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--C
Confidence 7776666552 22 2444456666664 5554311 25678999997 679999875 25799999664 5
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 012138 427 SNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++++++++++|.++++ ++++
T Consensus 376 ~~~l~~~l~~l~~~l~-~~~~ 395 (399)
T 1c7n_A 376 SSVIQESLERLNKALK-DLKN 395 (399)
T ss_dssp HHHHHHHHHHHHHHHH-HHC-
T ss_pred HHHHHHHHHHHHHHHH-HHHh
Confidence 8999999999999998 7753
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=291.76 Aligned_cols=357 Identities=15% Similarity=0.119 Sum_probs=244.5
Q ss_pred eEEEeecCCEEEeCCCC---eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC
Q 012138 59 IVFSQAKGSSIWDPEGN---KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY 132 (470)
Q Consensus 59 ~~~~~~~g~~~~d~~G~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 132 (470)
-++..++|.++++..++ ++|||.+|... +++ .+|+|.+++.++++... +.......++++++++++++++|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 34667777776655444 59999986332 233 78999999999987532 222223456788899999988875
Q ss_pred -----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCC--CCCCeee
Q 012138 133 -----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP--LLPGHLK 205 (470)
Q Consensus 133 -----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 205 (470)
+++++|+||++|++.+++.+.. +|+ .|++..++|++........... ....+..+ ...+...
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 166 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAATVA---------RGD-KVAIVQPDYFANRKLVEFFEGE-MVPVQLDYVSADETRAG 166 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTTCC---------TTC-EEEEEESCCTHHHHHHHHTTCE-EEEEEBCCCSSCCSSCC
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhCC---------CCC-EEEEcCCcccchHHHHHHcCCE-EEEeecccccccCcCCC
Confidence 6899999999999999987643 344 7888999987655443332221 11000000 0001111
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC--
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE-- 282 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~-- 282 (470)
+ |+++|++++++ ++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|..+ .....
T Consensus 167 ~---d~~~l~~~l~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~ 239 (407)
T 3nra_A 167 L---DLTGLEEAFKA---GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAA 239 (407)
T ss_dssp B---CHHHHHHHHHT---TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTT
T ss_pred c---CHHHHHHHHhh---CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCc
Confidence 2 89999999986 566766555599999999 89999999999999999999999999887776543 22222
Q ss_pred ---CCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Q 012138 283 ---EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEE 356 (470)
Q Consensus 283 ---~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~ 356 (470)
+...++.||||.++ +|+ |+|++++++++++.+.......+++.++++++++.++|+...+ ++..++.++++++
T Consensus 240 ~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (407)
T 3nra_A 240 VDAENVVTIMGPSKTESLSGY-RLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDE 318 (407)
T ss_dssp SCGGGEEEEECSSSTTCCGGG-CCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCcccccCCCee-eEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 22344669999998 898 9999999999999887666666777888888887766652111 3345555666666
Q ss_pred HHHHHHHHHhhCCCceEEEeccc-eeEEEEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSN 428 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e 428 (470)
+.+.|+++ | .+....+.+ .++++.+... +.+..++++.|+++ ||.+.++ ..+++|++++ .+++
T Consensus 319 l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~ 389 (407)
T 3nra_A 319 LLHVLRGC----E-GVFARTPQAGSYLFPRLPKL--AVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHE 389 (407)
T ss_dssp HHHHHHTS----T-TCBCCCCSBSSEECCBCCCB--SSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHH
T ss_pred HHHHHhcC----C-CceeccCCeeEEEEEeCCCC--CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHH
Confidence 66666543 2 344334554 5555544331 13678899999765 9998864 3689999976 4999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 012138 429 ELQEGSKALHDVLELDLP 446 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~~ 446 (470)
+|++++++|.++++ +++
T Consensus 390 ~i~~~~~~l~~~~~-~~~ 406 (407)
T 3nra_A 390 AAVAAARRIVTLVE-RYR 406 (407)
T ss_dssp HHHHHHHHHHHHHH-HHB
T ss_pred HHHHHHHHHHHHHH-Hhh
Confidence 99999999999998 654
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=279.22 Aligned_cols=335 Identities=16% Similarity=0.167 Sum_probs=243.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhh----C----CCeEEecCChhHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMF----G----YDMVLPMNTGAEG 144 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~----~----~~~v~~~~sGteA 144 (470)
|+.+|||.++.+. ..+++++.+.+++.++++....... |. .....++++.+++++ | .+++++|+||++|
T Consensus 33 g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 33 GVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 6788999988654 3477889999999999976431111 21 112344555555444 6 4679999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHH-
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFK- 219 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~- 219 (470)
++.+++.+.. +|+ .|++..++||+....... .+... ..++. .|+++|+++++
T Consensus 111 ~~~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~-~g~~~------------~~v~~~~~~~d~~~l~~~l~~ 167 (407)
T 2zc0_A 111 LDLLGRVLID---------PGD-VVITENPSYINTLLAFEQ-LGAKI------------EGVPVDNDGMRVDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHT-TTCEE------------EEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHHhcC---------CCC-EEEEeCCChHHHHHHHHH-cCCEE------------EEcccCCCCCCHHHHHHHHHh
Confidence 9999998753 454 788999999886543322 22111 12221 28999999997
Q ss_pred ---hcCCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC---CCCcceeec
Q 012138 220 ---ESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE---EVRPDMVIL 291 (470)
Q Consensus 220 ---~~~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~---~~~pdi~s~ 291 (470)
+ +.++++|+ ++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..+..+ +...++.+|
T Consensus 168 ~~~~-~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 245 (407)
T 2zc0_A 168 LKAK-GQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTL 245 (407)
T ss_dssp HHHT-TCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEES
T ss_pred hhcc-cCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccc
Confidence 3 13678875 555799999998 8899999999999999999999999988766643 222222 223456799
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--h-h--hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--R-D--EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~-~--~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
||.+++|+ |+|++++++++++.+.......+++.+++.++++.++++.. + + +.+.++++++++++.+.|++..
T Consensus 246 sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 323 (407)
T 2zc0_A 246 SKVLGTGF-RIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL- 323 (407)
T ss_dssp TTTTCTTS-CCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccCCCc-ceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 99999998 99999999999988876556667778999999988888753 2 2 4566777778888888877641
Q ss_pred hCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC--------CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 367 QFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT--------HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 367 ~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
| .+..+ +..|.++++.+... .+..++++.|.++ ||.+.++ ..+++||+++.. +++++++++++
T Consensus 324 --~-~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~ 396 (407)
T 2zc0_A 324 --P-NAEFTKPIAGMFVMFFLPEG---ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKK 396 (407)
T ss_dssp --T-TSCBCCCSBSSEEEEECSTT---CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHH
T ss_pred --C-CCEEecCCCcEEEEEEcCCC---CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHH
Confidence 1 12222 34566777766432 2678899999999 9999875 257999998766 89999999999
Q ss_pred HHHHHhccc
Q 012138 437 LHDVLELDL 445 (470)
Q Consensus 437 l~~~l~~~~ 445 (470)
|.++++ ++
T Consensus 397 l~~~l~-~~ 404 (407)
T 2zc0_A 397 LAKLYK-EK 404 (407)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHH-HH
Confidence 999998 65
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=286.69 Aligned_cols=350 Identities=15% Similarity=0.071 Sum_probs=247.5
Q ss_pred CceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC----
Q 012138 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---- 131 (470)
Q Consensus 57 ~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---- 131 (470)
.|+....+.+..++|.+|+++|||.++....+ .+|.+.+++.++++....++. ....++++++++++.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~---~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~ 88 (396)
T 3jtx_A 12 YPFARLHEAMQGISAPEGMEAVPLHIGEPKHP---TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTV 88 (396)
T ss_dssp CHHHHHHHHTTTCCCCTTCCCEECSCCSCCSC---CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCC
T ss_pred ChHHHHHHHHHhhhhccCCCeEEeCCcCCCCC---CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCC
Confidence 34444456677778899999999999864433 789999999998865433322 2234567778888777655
Q ss_pred -CC-eEEecCChhHHHHHHHHHHHHhchhcccCCCCC----cEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 132 -YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDE----AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 132 -~~-~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~----~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
.+ ++++|+||++|++.+++.+.. +|+ +.|++..++|++........+..... . +...+...
T Consensus 89 ~~~~~i~~t~g~~~al~~~~~~~~~---------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~-v---~~~~~g~~ 155 (396)
T 3jtx_A 89 DADNEILPVLGSREALFSFVQTVLN---------PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHF-A---NCPAPSFN 155 (396)
T ss_dssp CTTTSEEEESSHHHHHHHHHHHHCC---------C---CCCCEEEEEESCCHHHHHHHHHTTCEEEE-E---ECCTTTCC
T ss_pred CCCCeEEEcCCcHHHHHHHHHHHhC---------CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEE-e---ecCCCCCc
Confidence 45 899999999999999998754 442 58999999998776544333322111 0 11011111
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC-Cccccc----
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG-RMLASD---- 280 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G-~~~~~~---- 280 (470)
+ |+++|++++++ ++++|+++.++||+|.++ +.+.+++|.++|++||++||+||+|+++.+.| ......
T Consensus 156 ~---d~~~l~~~~~~---~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 228 (396)
T 3jtx_A 156 P---DWRSISEEVWK---RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAA 228 (396)
T ss_dssp C---CGGGSCHHHHH---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHH
T ss_pred c---CHHHHHHhhcc---CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhh
Confidence 2 78899999987 788888656699999999 88889999999999999999999999987776 333221
Q ss_pred ----cCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHH
Q 012138 281 ----WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLG 354 (470)
Q Consensus 281 ----~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~ 354 (470)
..+..+++.||||.++ +|+ |+|++++++++++.+.......+++.++++++++.++|+..+. +..+++++++.
T Consensus 229 ~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 307 (396)
T 3jtx_A 229 QLGRSRQKLLMFTSLSKRSNVPGL-RSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKF 307 (396)
T ss_dssp HTTCCCTTEEEEEESTTTSSCGGG-CCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccccCcEEEEeccccccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1344556779999876 788 9999999999999887665666788999999999888863111 23444455555
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccC------------CCCEEEEec
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT------------HDTIVRLTP 421 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~------------~~~~iR~~~ 421 (470)
+++.+.|.++ .+ +. ....|.++++.+.. .+..++++.|.+ +||.+.|+ ..+++||++
T Consensus 308 ~~l~~~l~~~---~~--~~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~ 377 (396)
T 3jtx_A 308 ERVIPILQQV---FD--VK-LPDASFYIWLKVPD----GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIAL 377 (396)
T ss_dssp HHHHHHHTTT---SC--CC-CCSSSSEEEEECTT----SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEEC
T ss_pred HHHHHHHHhc---CC--cc-CCCeeEEEEEECCC----CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEE
Confidence 5555554432 11 11 12335566665543 256788888865 59998764 258999996
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 012138 422 PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ .+++++++++++|.++++
T Consensus 378 ~--~~~~~i~~~l~~l~~~l~ 396 (396)
T 3jtx_A 378 V--ADVATCVKAAEDIVSLYR 396 (396)
T ss_dssp C--SCHHHHHHHHHHHHHHCC
T ss_pred c--CCHHHHHHHHHHHHHHhC
Confidence 5 499999999999998763
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=280.86 Aligned_cols=337 Identities=13% Similarity=0.149 Sum_probs=238.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-----CCCcHHHHHHHHhhhhC----CC-eEEecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-----YNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~ 145 (470)
.+|||.++.. +++ .+|.+.+++.++++........| ..++++++++++.+.+| .+ ++++++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 4789988864 345 78999999999987521111111 22345555555555444 46 899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-----eeeecC-CCHHHHHHHHH
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-----HLKVDF-GDITALEKIFK 219 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~d~~~Le~~l~ 219 (470)
+.+++++.. +|+ .|++..++||+........+. ..... +..++ .....+ .|+++|+++++
T Consensus 115 ~~~~~~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~-~~~~~---~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 180 (429)
T 1yiz_A 115 YATIQGHVD---------EGD-EVIIIEPFFDCYEPMVKAAGG-IPRFI---PLKPNKTGGTISSADWVLDNNELEALFN 180 (429)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTC-EEEEE---ECBCCCSSSSEEGGGCBCCHHHHHHHCC
T ss_pred HHHHHHhcC---------CCC-EEEEcCCCchhHHHHHHHcCC-EEEEE---eCCcccccccccccCcccCHHHHHHHhc
Confidence 999998743 454 788899999986654332221 11111 11110 000011 28999999886
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccc----cCCCCcceeecccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASD----WEEVRPDMVILGKA 294 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~----~~~~~pdi~s~sK~ 294 (470)
+ ++++|++++++||+|.++ +++++++|.++|++||++||+||+|++|.+.|.. ..+. ..+..+++.++||.
T Consensus 181 ~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~ 256 (429)
T 1yiz_A 181 E---KTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKT 256 (429)
T ss_dssp T---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHH
T ss_pred c---CceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhc
Confidence 4 789888777899999998 8999999999999999999999999998776642 1121 23445567799999
Q ss_pred cc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-----H--hh--hhHHHHHHHHHHHHHHHHHHH
Q 012138 295 LG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-----I--RD--EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 295 l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----~--~~--~~~~~~~~~~~~~l~~~L~~l 364 (470)
++ +|+ |+|++++++++++.+.......+++.++++++++.++|+. . ++ ++++++++++++++.+.|+++
T Consensus 257 ~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 335 (429)
T 1yiz_A 257 FSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV 335 (429)
T ss_dssp HTCGGG-CCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc-ceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 898 9999999999998887655667888999999999999987 3 21 345566667777777777765
Q ss_pred HhhCCCceEEEec-cceeEEEEeccCCC---------chhHHHHHHHHH-HcCceeccCC-----------CCEEEEecC
Q 012138 365 QQQFPNYVKEVRG-RGLFNAVEFDKTAL---------PVSAYDICLKMK-ERGILAKPTH-----------DTIVRLTPP 422 (470)
Q Consensus 365 ~~~~p~~~~~~~~-~g~~~~~~~~~~~~---------~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~iR~~~~ 422 (470)
+ +....+ .|.++++.+..... ..+..+++++|. ++||.+.|+. .+++||+++
T Consensus 336 g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~ 409 (429)
T 1yiz_A 336 G------MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF 409 (429)
T ss_dssp T------CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC
T ss_pred C------CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec
Confidence 1 233334 46677776653200 025678888886 6899998752 579999976
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 012138 423 LSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++++|++++++|+++++
T Consensus 410 --~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 410 --KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp --SCHHHHHHHHHHHHHHSC
T ss_pred --CCHHHHHHHHHHHHHhcc
Confidence 599999999999999876
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=274.35 Aligned_cols=329 Identities=15% Similarity=0.123 Sum_probs=245.6
Q ss_pred ecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCCh
Q 012138 64 AKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTG 141 (470)
Q Consensus 64 ~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sG 141 (470)
.+|.++++.+|+.+|||.++... ++ .+|++.+++.++++.... |......+++++++++++ .+++++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNENP--LG-MSPKAQAAARDAVVKANR----YAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCCS--SC-CCHHHHHHHHHTGGGTTS----CCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCCC--CC-CCHHHHHHHHHHHhhCcC----CCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 45677888999999999998643 33 889999999998875322 333456789999999987 4689999999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHH
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEK 216 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~ 216 (470)
++|++.+++.+.. +|+ .|++..++|++........+.. +..++++ |+++|++
T Consensus 78 ~~a~~~~~~~l~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~~ 134 (354)
T 3ly1_A 78 SEGIRAAIEAYAS---------LEA-QLVIPELTYGDGEHFAKIAGMK-------------VTKVKMLDNWAFDIEGLKA 134 (354)
T ss_dssp HHHHHHHHHHHCC---------TTC-EEEEESSSCTHHHHHHHHTTCE-------------EEEECCCTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCC-eEEECCCCchHHHHHHHHcCCE-------------EEEecCCCCCCCCHHHHHH
Confidence 9999999997743 454 7888999988765443332221 1233333 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc----cccC-CCCcceeec
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA----SDWE-EVRPDMVIL 291 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~----~~~~-~~~pdi~s~ 291 (470)
+++++ +++++|+++.++||+|.++ +.+.+++|.++| +||+++|+||+|+++.+.+.... .+.. +....+.++
T Consensus 135 ~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 135 AVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEES
T ss_pred HhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeC
Confidence 99841 2788888777799999999 777788888888 79999999999998876664321 1222 333455699
Q ss_pred ccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 292 GKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
||.++ +|+ |+|++++++++++.+..... .++.++++++++.++|+.... +..+++++++.+++.+.|++++
T Consensus 212 sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~---- 284 (354)
T 3ly1_A 212 SKIHAMAGM-RVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDLK---- 284 (354)
T ss_dssp SSTTCCGGG-CCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred hhhccChhh-hheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC----
Confidence 99998 898 99999999999998875433 378899999999888874322 4566777778888888887762
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec---cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK---PTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~---~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+...++.|.++++.+.. +..++.+.|.++||.+. .+..+++|+++. +++++++++++|+++++
T Consensus 285 --~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 285 --LPYLPSEGNFVFHQLVV-----PLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMREFRK 350 (354)
T ss_dssp --CCBCCCCSSEEEEECSS-----CHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred --CeECCCCceEEEEECCC-----CHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 22335678887776543 56789999999999987 123689999943 89999999999999987
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=280.07 Aligned_cols=338 Identities=16% Similarity=0.201 Sum_probs=240.8
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-----ccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-----LSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~ 145 (470)
+..+|||.+|.+.. .+++++++.+++.++++... +.......++++.+++++.+..|. ++|++|+||++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 34689999887543 35678999999999887632 111111223344444444333364 7899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHh-
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKE- 220 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~- 220 (470)
+.+++++.. +|+ .|++..++|++........+. . +..++. .|+++|+++++.
T Consensus 154 ~~~~~~l~~---------~Gd-~Vlv~~p~y~~~~~~~~~~g~-~------------~~~v~~~~~g~d~~~L~~~l~~~ 210 (448)
T 3aow_A 154 DLIGRVFLN---------PGD-IVVVEAPTYLAALQAFNFYEP-Q------------YIQIPLDDEGMKVEILEEKLKEL 210 (448)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHTTCC-E------------EEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHHcC---------CCC-EEEEeCCChHHHHHHHHHcCC-E------------EEEeccCCCCCCHHHHHHHHhhh
Confidence 999998754 454 888899999886654433221 1 112222 289999999971
Q ss_pred --cCCCeEEEEEc-cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccccCCCCcceeeccc
Q 012138 221 --SGDQIAGFLFE-PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDWEEVRPDMVILGK 293 (470)
Q Consensus 221 --~~~~~~~vi~e-pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~~~~~pdi~s~sK 293 (470)
.+.++++|++. .++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..++..+..+++.+|||
T Consensus 211 ~~~~~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 211 KSQGKKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp HHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred hccCCCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchh
Confidence 11368887644 4699999998 8999999999999999999999999988766642 23333344457779999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+++|+ |+||+++++++++.+.......+++.++++++++.++|+.. .+ +.+++.++++++++.+.|++. +|
T Consensus 290 ~~~~Gl-riG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~ 365 (448)
T 3aow_A 290 ILAPGF-RIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MP 365 (448)
T ss_dssp TTCGGG-CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_pred hccccc-cEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CC
Confidence 999998 99999999999998876555556778999999988888742 11 334555556666676666653 22
Q ss_pred CceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 370 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
..+....+. |.|+++.+... .+..+++++|.++||.+.|+ ..+++|++++. .++++|++++++|.++
T Consensus 366 ~g~~~~~p~~g~~~~v~~~~~---~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~ 441 (448)
T 3aow_A 366 EGVKWTKPEGGMFIWVTLPDG---IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAET 441 (448)
T ss_dssp TTCEECCCSBSSEEEEECSTT---CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHH
T ss_pred CCeEEeCCCccEEEEEEcCCC---CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 124443444 56666666432 26778999999999999864 35799999775 4899999999999999
Q ss_pred Hhccc
Q 012138 441 LELDL 445 (470)
Q Consensus 441 l~~~~ 445 (470)
++ +.
T Consensus 442 l~-~~ 445 (448)
T 3aow_A 442 IK-EE 445 (448)
T ss_dssp HH-HH
T ss_pred HH-HH
Confidence 97 54
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=302.25 Aligned_cols=353 Identities=12% Similarity=0.118 Sum_probs=249.3
Q ss_pred ceEEEeecCCEEEeCCCC--eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC----
Q 012138 58 PIVFSQAKGSSIWDPEGN--KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG---- 131 (470)
Q Consensus 58 p~~~~~~~g~~~~d~~G~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---- 131 (470)
.++.++++|+++||.+|+ .++||..+... ++ .+|++.+++.++++.....+.....++++++++++.+.++
T Consensus 12 ~~~~~~~~g~~~~d~~g~~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 12 TAPNRLSHHTYKWKETETDPQLLPAWIADMD--FE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 355678999999999999 99999887542 33 6899999999988653222111144566677777766554
Q ss_pred CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeeecCC
Q 012138 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKVDFG 209 (470)
Q Consensus 132 ~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 209 (470)
.++|++++||++|++.+++++.. +|+ .|++..++||+........+.... ..+..+. ...+
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~~~----~~~~~~~~g~~~~--- 151 (392)
T 3b1d_A 89 KEDIVFVEGVVPAISIAIQAFTK---------EGE-AVLINSPVYPPFARSVRLNNRKLV----SNSLKEENGLFQI--- 151 (392)
Confidence 46899999999999999998754 344 788899999887655433322111 0111000 0112
Q ss_pred CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----ccccc--CC
Q 012138 210 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDW--EE 283 (470)
Q Consensus 210 d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~--~~ 283 (470)
|+++|++++++. ++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|++|.+.|.. +.+.. .+
T Consensus 152 d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 228 (392)
T 3b1d_A 152 DFEQLENDIVEN--DVKLYLLCNPHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKD 228 (392)
Confidence 788899888732 677777666799999998 8889999999999999999999999998776632 22222 34
Q ss_pred CCcceeecccccc-CCCcceeEEEecH-HHHhhcCcCCccCCC-CCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 012138 284 VRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD--EKLAERSAHLGEELR 358 (470)
Q Consensus 284 ~~pdi~s~sK~l~-gG~~~ig~v~~~~-~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~ 358 (470)
..+++.||||+++ +|+ |+|++++++ ++++.+.......++ +.++++++++.++|+..++ ++++++++++.+++.
T Consensus 229 ~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 229 FALVLSSATKTFNIAGT-KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAV 307 (392)
Confidence 4566789999998 898 999999865 588888765555544 4688888888888874222 334555556666666
Q ss_pred HHHHHHHhhCCCceEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCCHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t~e~i 430 (470)
+.|++. +| .+...++.|.++. +.+.... .+..++++.|+ ++||++.|+ .++++||+ +..+++++
T Consensus 308 ~~l~~~---~~-~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i 379 (392)
T 3b1d_A 308 EYFAQE---AP-RLKVMKPQGTYLIWLDFSDYG--LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLV 379 (392)
Confidence 665541 22 3445567777776 4443211 25667889997 779999875 25789999 45578999
Q ss_pred HHHHHHHHHHHh
Q 012138 431 QEGSKALHDVLE 442 (470)
Q Consensus 431 ~~~~~~l~~~l~ 442 (470)
++++++|.++++
T Consensus 380 ~~~l~~l~~~l~ 391 (392)
T 3b1d_A 380 EEICKRIVCCLP 391 (392)
Confidence 999999998875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=266.66 Aligned_cols=321 Identities=14% Similarity=0.083 Sum_probs=242.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~ 150 (470)
.+.+|||.++... ...+|++.+++.++++.... ..|......+++++++++++. +++++|+||++|++.+++
T Consensus 29 ~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~--~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAMENP---YRLPPALRSELAARLGEVAL--NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSCCC---CCCCHHHHHHHHHHHHHHHT--TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCCCC---CCCCHHHHHHHHHHhhhhhh--hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 3578999988632 33789999999999875321 123344578999999999887 789999999999999998
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCe
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQI 225 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~ 225 (470)
.+.. +|+ .|++..++|++........+.. +..++. .|+++|+++++++ ++
T Consensus 104 ~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~l~~~--~~ 158 (367)
T 3euc_A 104 AAAR---------PGA-KVMAPVPGFVMYAMSAQFAGLE-------------FVGVPLRADFTLDRGAMLAAMAEH--QP 158 (367)
T ss_dssp HTCC---------TTC-EEEEEESCSCCSCHHHHTTTCE-------------EEEEECCTTSCCCHHHHHHHHHHH--CC
T ss_pred HHcC---------CCC-EEEEcCCCHHHHHHHHHHcCCe-------------EEEecCCCCCCCCHHHHHHHhhcc--CC
Confidence 7743 454 7888999998876554333221 112221 2899999999874 57
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig 303 (470)
++|+++.++||+|.++ +.+.+++|.++|++| |+++|+||+|++|+..+.....+..+..+++.+|||...+|+ |+|
T Consensus 159 ~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G 236 (367)
T 3euc_A 159 AIVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGI-RLG 236 (367)
T ss_dssp SEEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSC-CEE
T ss_pred CEEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhccccc-Cce
Confidence 7888767799999999 888899999999999 999999999998865444333444454556779999955788 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
++++++++++.+.... .+++.++++++++.++|+..+. +...++.+++++++.+.|++ +| .+...++.|.++
T Consensus 237 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~-g~~~~~~~~~~~ 309 (367)
T 3euc_A 237 YVAGDPQWLEQLDKVR--PPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA----HG-GVTVFPSAANFL 309 (367)
T ss_dssp EEEECHHHHHHHGGGC--CSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT----ST-TCEECCCSSSEE
T ss_pred eeeeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CC-CcEECCCCCeEE
Confidence 9999999998887533 4677899999999988875221 34555666666666666654 33 355556677777
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+. +..++.+.|.++||.+.++. .+++|+++. +++++++++++|+++++
T Consensus 310 ~~~~~------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 310 LARVP------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp EEECS------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred EEECC------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 77654 36788999999999998764 589999943 99999999999999876
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=281.45 Aligned_cols=337 Identities=13% Similarity=0.153 Sum_probs=240.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc--cccC-CCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL--TLSS-RAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGV 145 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~-~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~ 145 (470)
.|+.+|||..|.+. ++ .+|.+.+++.++++.. ..++ .....++++++++++.+.+|. ++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~~--~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFFS--YS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSCS--SC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCCC--CC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 45678999988653 33 7899999999998752 1111 112234566666776665553 5799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC--------CCCeeeecCCCHHHHHHH
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL--------LPGHLKVDFGDITALEKI 217 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~Le~~ 217 (470)
+.+++.+.. +|+ .|++..++||+........+... ...+..+. ......+ |+++|+++
T Consensus 132 ~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~~-~~v~~~~~~~~~~~~~~~~~~~~---d~~~l~~~ 197 (447)
T 3b46_A 132 LSCLMGLLN---------AGD-EVIVFEPFFDQYIPNIELCGGKV-VYVPINPPKELDQRNTRGEEWTI---DFEQFEKA 197 (447)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEE-EEEEEECCGGGGTSCBCSTTSEE---CHHHHHTT
T ss_pred HHHHHHHcC---------CCC-EEEEeCCCchhHHHHHHHcCCEE-EEEeCCCccccccccccccCccc---CHHHHHHh
Confidence 999998754 455 78889999987655433322211 11000000 0001122 89999988
Q ss_pred HHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc-----cCCCCcceeecc
Q 012138 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-----WEEVRPDMVILG 292 (470)
Q Consensus 218 l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~-----~~~~~pdi~s~s 292 (470)
+++ ++++|++++++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|....+. .++..+.+.++|
T Consensus 198 l~~---~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~s 273 (447)
T 3b46_A 198 ITS---KTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAG 273 (447)
T ss_dssp CCT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHH
T ss_pred hcc---CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCc
Confidence 864 789888777799999999 89999999999999999999999999887766322221 235556677999
Q ss_pred cccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHh
Q 012138 293 KALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 293 K~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
|.++ +|+ |+||+++ ++++++.+.......+++.+++.++++.++|+.... +.++++++++++++.+.|++++
T Consensus 274 K~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 351 (447)
T 3b46_A 274 KSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG- 351 (447)
T ss_dssp HHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 9998 898 9999999 999998887655566788899999999888887532 3466777788888888887762
Q ss_pred hCCCceEEEec-cceeEEEEeccCCC------------chhHHHHHHHHH-HcCceeccCC-----------CCEEEEec
Q 012138 367 QFPNYVKEVRG-RGLFNAVEFDKTAL------------PVSAYDICLKMK-ERGILAKPTH-----------DTIVRLTP 421 (470)
Q Consensus 367 ~~p~~~~~~~~-~g~~~~~~~~~~~~------------~~~~~~~~~~l~-~~Gv~~~~~~-----------~~~iR~~~ 421 (470)
+....+ .|.++++.+..... ..+..+++++|. ++||.+.|+. .+++||++
T Consensus 352 -----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~ 426 (447)
T 3b46_A 352 -----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426 (447)
T ss_dssp -----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred -----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence 222334 45566666543100 125678998887 5799998762 68999996
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 012138 422 PLSISSNELQEGSKALHD 439 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~ 439 (470)
+ .++++|++++++|.+
T Consensus 427 ~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 427 C--KDDAYLENAVERLKL 442 (447)
T ss_dssp C--SCHHHHHHHHHHGGG
T ss_pred e--CCHHHHHHHHHHHHH
Confidence 5 589999999999977
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=275.28 Aligned_cols=333 Identities=11% Similarity=0.113 Sum_probs=233.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+++|||.++....+ .+|++.+++.++++.....+ .....++++.+++++.+.++ .++|++|+||++|++
T Consensus 29 ~g~~~i~l~~g~~~~~---~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~ 105 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTG---APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFL 105 (391)
T ss_dssp TTCCCEECCCSSCSSC---SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHH
T ss_pred cCCCeEEccCCCCCCC---CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHH
Confidence 6788999999875433 58999999999886532211 11133445556666655443 468999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEKIFK 219 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~~l~ 219 (470)
.+++.+.. +|+ .|++..++|++........+.. +..++++ |+++|+++
T Consensus 106 ~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~~-- 160 (391)
T 3h14_A 106 LAFTALFD---------SGD-RVGIGAPGYPSYRQILRALGLV-------------PVDLPTAPENRLQPVPADFAGL-- 160 (391)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHTTCE-------------EEEEECCGGGTTSCCHHHHTTS--
T ss_pred HHHHHhcC---------CCC-EEEEcCCCCccHHHHHHHcCCE-------------EEEeecCcccCCCCCHHHHHhc--
Confidence 99998754 455 7888999998765443332221 1222221 77777655
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC-CCCcceeecccccc-C
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVRPDMVILGKALG-G 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~-~~~pdi~s~sK~l~-g 297 (470)
++++|+++.++||+|.++ +.+++++|.++|++||+++|+||+|++|.+.|.......+ +....+.++||.++ +
T Consensus 161 ----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 161 ----DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp ----CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT
T ss_pred ----CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc
Confidence 456777666699999999 8889999999999999999999999998777654322222 22233448999998 8
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
|+ |+|++++++++++.+.......+++.++++++++.++++..+. +..+++++++.+++.+.|+++. .....+
T Consensus 236 G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~ 309 (391)
T 3h14_A 236 GW-RVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAG-----FTRIAP 309 (391)
T ss_dssp TS-CCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCBCC
T ss_pred cc-eeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC-----CCcccC
Confidence 98 9999999999998887666677888999999998888762111 4456666777777777776652 222234
Q ss_pred ccc-eeEEEEeccCCCchhHHHHHHHHHHc-CceeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 377 GRG-LFNAVEFDKTALPVSAYDICLKMKER-GILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 377 ~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+.| .++++.+.... .+..++++.|+++ ||.+.|+ ..+++|++++. +++++++++++|.++++ +...
T Consensus 310 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~-~~~~ 384 (391)
T 3h14_A 310 PDGAFYVYADVSDLT--DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQ-ARGE 384 (391)
T ss_dssp CCBTTEEEEECTTTC--SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHH-HC--
T ss_pred CCeeEEEEEecCccC--CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHH-Hhcc
Confidence 555 44555554311 3678899998876 9999864 25799999654 89999999999999998 7654
Q ss_pred CC
Q 012138 448 MR 449 (470)
Q Consensus 448 ~~ 449 (470)
.+
T Consensus 385 ~~ 386 (391)
T 3h14_A 385 GH 386 (391)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=279.60 Aligned_cols=345 Identities=17% Similarity=0.167 Sum_probs=242.9
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-----ccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-----LSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGte 143 (470)
++.+|||.++.+. ..++++|++.+++.++++... +.......++++++++++.+.+| .++|++|+||++
T Consensus 42 ~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 5678999988754 357889999999999987632 11111223345555555544436 357999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc--
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES-- 221 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~-- 221 (470)
|++.+++++.. +|+ .|++..++|++........+.. .... +..++ .+ |+++|++++++.
T Consensus 121 al~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~-~~~v---~~~~~--~~---d~~~l~~~l~~~~~ 181 (425)
T 1vp4_A 121 ALDLIGKLFLD---------DES-YCVLDDPAYLGAINAFRQYLAN-FVVV---PLEDD--GM---DLNVLERKLSEFDK 181 (425)
T ss_dssp HHHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHTTTCE-EEEE---EEETT--EE---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---------CCC-EEEEeCCCcHHHHHHHHHcCCE-EEEe---ccCCC--CC---CHHHHHHHHHhhhh
Confidence 99999997743 454 8888999998866544332221 1100 10011 12 899999999751
Q ss_pred ---CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccc---ccCCCCcceeeccc
Q 012138 222 ---GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LAS---DWEEVRPDMVILGK 293 (470)
Q Consensus 222 ---~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~---~~~~~~pdi~s~sK 293 (470)
+.++++|+ +..++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..+ +..+....+.+|||
T Consensus 182 ~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK 260 (425)
T 1vp4_A 182 NGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK 260 (425)
T ss_dssp TTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTT
T ss_pred cccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccc
Confidence 12688874 555699999999 8999999999999999999999999988776643 222 21222233569999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+++|+ |+|++++++++++.+.......+++.++++++++.++|+.. .+ +.++++++++++++.+.|+++...+|
T Consensus 261 ~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 339 (425)
T 1vp4_A 261 VLAPGL-RIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 339 (425)
T ss_dssp TTCGGG-CEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTST
T ss_pred cccccc-ceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999998 99999999999988875555556778999999999888764 22 44566677777888887776421110
Q ss_pred CceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 370 NYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 370 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+..+ +..|.++++.+... .+..++++.|.++||.+.|+ ..+++||+++.. +++++++++++|.++
T Consensus 340 -g~~~~~~~~g~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 340 -GVKWVKSEGGLFIWLTLPEG---FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREV 414 (425)
T ss_dssp -TCEECCCSBSSEEEEECCTT---CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred -ceEEecCCccEEEEEEcCCC---CCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 23333 34466777766532 24567899999999998764 257999998764 899999999999999
Q ss_pred HhcccC
Q 012138 441 LELDLP 446 (470)
Q Consensus 441 l~~~~~ 446 (470)
++ ++.
T Consensus 415 l~-~~~ 419 (425)
T 1vp4_A 415 VL-EYG 419 (425)
T ss_dssp HH-HHH
T ss_pred HH-HHH
Confidence 98 654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=281.76 Aligned_cols=355 Identities=11% Similarity=0.066 Sum_probs=251.9
Q ss_pred hhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-ccCC--CCCCCcHHHHH
Q 012138 47 YEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSR--AFYNDKFPVFA 123 (470)
Q Consensus 47 ~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~ 123 (470)
+++....+.+.++.........+++.+|+.+|||.++... ++ .+|++.+++.++++... ..+. ....++++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la 92 (437)
T 3g0t_A 16 NELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPG--LP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEAS 92 (437)
T ss_dssp HHHTCSCGGGCCHHHHHHHHHHHHHHHTCCCEECCCCSCC--SC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHH
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHHHhcCCCEEeccCcCCC--CC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHH
Confidence 3444444444444333344455667788999999998754 33 78999999999987522 1111 11223344455
Q ss_pred HHHhhhhC----CCeEEecCChhHHHHHHHHHHH--HhchhcccCCCCCc-EEEEEccCccccccchhcccCCcccccCC
Q 012138 124 ERLTSMFG----YDMVLPMNTGAEGVETALKLAR--KWGYVKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 124 ~~l~~~~~----~~~v~~~~sGteA~~~al~~~~--~~~~~~~~~~~g~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
+++.+.++ .+++++|+||++|++.+++.+. . +|+. .|++..++|++........+...
T Consensus 93 ~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~---------~gd~~~Vl~~~p~~~~~~~~~~~~g~~~------ 157 (437)
T 3g0t_A 93 RFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTH---------KNREYGTLFIDPGFNLNKLQCRILGQKF------ 157 (437)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSC---------TTCSCCEEEEESCCHHHHHHHHHHTCCC------
T ss_pred HHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCC---------CCCccEEEEeCCCcHhHHHHHHHcCCEE------
Confidence 55544332 5689999999999999999875 3 3542 67778999987655444333221
Q ss_pred CCCCCCeeeecCC------CHHHHHHHHHhcCCCeEEEEE-ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 197 GPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 197 ~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~~vi~-epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..++.+ |+++|++++++. ++++|++ +| +||+|.++ +.+.+++|.++|++||++||+||+|++
T Consensus 158 -------~~v~~~~~~~~~d~~~l~~~l~~~--~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~ 226 (437)
T 3g0t_A 158 -------ESFDLFEYRGEKLREKLESYLQTG--QFCSIIYSNP-NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFG 226 (437)
T ss_dssp -------EEEEGGGGCTTHHHHHHHHHHTTT--CCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred -------EEEeecCCCCccCHHHHHHHHhcC--CceEEEEeCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhh
Confidence 222221 789999999432 6777764 55 99999999 888999999999999999999999997
Q ss_pred CcccCCc---------ccccc-CCCCcceeecccccc-CCCcceeEEEecHHHHh-h-----------------cCcCCc
Q 012138 270 LARSGRM---------LASDW-EEVRPDMVILGKALG-GGVIPVSAVLADKEVML-C-----------------IQPGEH 320 (470)
Q Consensus 270 ~g~~G~~---------~~~~~-~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~-~-----------------~~~~~~ 320 (470)
+.+.+.. ..+.. .+....+.++||.++ +|+ |+|++++++++++ . +.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (437)
T 3g0t_A 227 MDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ-RIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY 305 (437)
T ss_dssp CCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG-CCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHH
T ss_pred cccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc-eeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHh
Confidence 6554322 11211 233334569999999 898 9999999999998 7 665555
Q ss_pred cCCCCCCHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-------e-ccceeEEEEec
Q 012138 321 GSTFGGNPLASAVAIASLDVIR-----DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-------R-GRGLFNAVEFD 387 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-------~-~~g~~~~~~~~ 387 (470)
..+++.++++++++.++|+... .+.++++++++++++.+.|++++ +... + ..|.++++.+.
T Consensus 306 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~~~~~~~ 379 (437)
T 3g0t_A 306 ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNG------FNIVYDKDGNEPLADGFYFTVGYK 379 (437)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTT------EEESSCEETTEECCSSSEEEEEET
T ss_pred hhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC------CEEeccccCCCCCceeEEEEEecC
Confidence 5677889999999999998765 34577777888888888877651 3322 4 45666777665
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+..++.+.|.++||.+.++. .+++|++++. .+++++++++++|.++++
T Consensus 380 -~---~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 380 -G---MDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp -T---CCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHHHHHHHHHHHH
T ss_pred -C---CCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 2 267889999999999998764 2789999884 499999999999999876
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=275.83 Aligned_cols=329 Identities=16% Similarity=0.178 Sum_probs=232.7
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC-CcHHHHHHHHhhhh----CC----C-eEEecCChh
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN-DKFPVFAERLTSMF----GY----D-MVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~----~-~v~~~~sGt 142 (470)
+|+.+|||.++.. +++ .+|.+.+++.++++.... ..|.. ....++++.+++++ |. + +|++++||+
T Consensus 23 ~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPTT--YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGGG--SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCCc--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 4788999998865 355 589999999998864211 11222 12345555555544 64 3 899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+|++.+++.+.. +|+ .|++..++||+........+.. .... +. .+... .|+++|+++++.
T Consensus 98 ~a~~~~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~~---~~-~~~~~---~d~~~l~~~l~~-- 157 (376)
T 2dou_A 98 EGLAHLLLALTE---------PED-LLLLPEVAYPSYFGAARVASLR-TFLI---PL-REDGL---ADLKAVPEGVWR-- 157 (376)
T ss_dssp HHHHHHHHHHCC---------TTC-EEEEESSCCHHHHHHHHHTTCE-EEEE---CB-CTTSS---BCGGGSCHHHHH--
T ss_pred HHHHHHHHHhcC---------CCC-EEEECCCCcHhHHHHHHHcCCE-EEEe---eC-CCCCC---CCHHHHHHhhcc--
Confidence 999999987743 454 7888999998876554433221 1111 11 11111 278899988875
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-ccc---CCCCcceeecccccc-C
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDW---EEVRPDMVILGKALG-G 297 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~---~~~~pdi~s~sK~l~-g 297 (470)
++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.... .+. .+....+.++||.++ +
T Consensus 158 -~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 235 (376)
T 2dou_A 158 -EAKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLA 235 (376)
T ss_dssp -HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCG
T ss_pred -CceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCCh
Confidence 688888766699999998 899999999999999999999999998876654321 222 233345669999998 8
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
|+ |+|++++++++++.+.......+++.++++++++.++|+..++ +...++++++++++.+.|+++ +...
T Consensus 236 G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~ 307 (376)
T 2dou_A 236 GF-RLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-------LSLL 307 (376)
T ss_dssp GG-CCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-------SEEC
T ss_pred hh-eeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcc
Confidence 98 9999999999998887655556677899999988888864221 334555566666666666542 2223
Q ss_pred ecc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 376 RGR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 376 ~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.+. |.++++.+... .+..++.+.|.++||.+.++. .+++|++++ .+++++++++++|++++
T Consensus 308 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 308 PPRATMYLWGRLPEG---VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALV--RPLEELLEAAKRIREAL 375 (376)
T ss_dssp CCCBSSEEEEECCTT---CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred CCCeeEEEEEECCCC---CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHh
Confidence 344 45566666432 256789999999999998752 589999965 48999999999998865
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=274.88 Aligned_cols=338 Identities=16% Similarity=0.143 Sum_probs=238.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.++||.++... ++ .+|.+.+++.++++.....+. ....++++++++++.+.++ .+++++|+||++|++
T Consensus 28 ~g~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEPD--FN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 57889999988643 44 689999999998865321111 1123345556666655444 467999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..++|++........ +..... .+..++ ...+ |+++|++++++ ++
T Consensus 105 ~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~-g~~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~ 164 (388)
T 1j32_A 105 NLMLAMIE---------PGD-EVIIPAPFWVSYPEMVKLA-EGTPVI---LPTTVETQFKV---SPEQIRQAITP---KT 164 (388)
T ss_dssp HHHHHHCC---------TTC-EEEEESSCCTHHHHHHHHT-TCEEEE---ECCCGGGTTCC---CHHHHHHHCCT---TE
T ss_pred HHHHHhcC---------CCC-EEEEcCCCChhHHHHHHHc-CCEEEE---ecCCcccCCCC---CHHHHHHhcCc---Cc
Confidence 99998743 454 8888999998765433222 211110 111000 0111 79999998875 78
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----ccccc--CCCCcceeecccccc-CC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDW--EEVRPDMVILGKALG-GG 298 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~~--~~~~pdi~s~sK~l~-gG 298 (470)
++|++++++||+|.++ +++++++|.++|++||+++|+||+|+++.+.|.. ..+.. .+..+++.++||.++ +|
T Consensus 165 ~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 165 KLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred eEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc
Confidence 8888777799999998 8899999999999999999999999988766532 11211 334456779999998 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+|++++++++++.+.......+++.++++++++.++|+..++ +++.++++++++++.+.|+++ | .+....
T Consensus 244 ~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~ 317 (388)
T 1j32_A 244 W-RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----P-GLECPK 317 (388)
T ss_dssp T-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----T-TCBCCC
T ss_pred c-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC----C-CCcccC
Confidence 8 9999999999988887655667788899999888888864322 346667777777777777653 2 233334
Q ss_pred ccceeEEE-EeccCCCchhHHHHHHHHHH-cCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 GRGLFNAV-EFDKTALPVSAYDICLKMKE-RGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~~g~~~~~-~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+.++.| .+... +.+..++++.|.+ +||.+.++. ++++|++++ ++++++++++++|.++++ ++
T Consensus 318 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~-~~ 387 (388)
T 1j32_A 318 PDGAFYMFPSIAKT--GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLH-GI 387 (388)
T ss_dssp CCBTTEECCBCGGG--TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred CCeeEEEEEecCCC--CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence 45444443 33320 1257789999986 699998753 689999965 799999999999999987 54
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=276.61 Aligned_cols=337 Identities=10% Similarity=0.127 Sum_probs=236.1
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGte 143 (470)
.+|+++|||.++.. +++ .+|.+.+++.++++... +.......++++.+++++.+.+|. +++++|+||++
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 46788999998864 345 78999999998876531 111111223344444444443363 58999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~ 216 (470)
|++.+++.+.. +|+ .|++..++||+........+.. +..++.+ |+++|++
T Consensus 111 a~~~~~~~~~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 167 (412)
T 2x5d_A 111 GLAHLMLATLD---------HGD-TILVPNPSYPIHIYGAVIAGAQ-------------VRSVPLVPGIDFFNELERAIR 167 (412)
T ss_dssp HHHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHHTCE-------------EEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCCE-------------EEEeecCCccCCCCCHHHHHH
Confidence 99999997743 454 7888999998876544332221 1122221 5677877
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccccc----CCCCcceeec
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDW----EEVRPDMVIL 291 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~----~~~~pdi~s~ 291 (470)
+++. ++++|++..++||+|.++ +.+++++|.++|++||++||+||+|+++.++|.. ..... .+....+.++
T Consensus 168 ~i~~---~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 243 (412)
T 2x5d_A 168 ESIP---KPRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTL 243 (412)
T ss_dssp TEES---CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEEC
T ss_pred hccc---CceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecC
Confidence 7753 667777644599999998 8899999999999999999999999988766532 12211 2333446699
Q ss_pred ccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 292 GKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
||.++ +|+ |+|++++++++++.+.......+++.++++++++.++|+..++ +.+.++++++++++.+.|++++
T Consensus 244 sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--- 319 (412)
T 2x5d_A 244 SKSYNMAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREAG--- 319 (412)
T ss_dssp C-CCSCTTS-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred ccccCCccc-ceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 99998 898 9999999999998887655556788999999999888875332 4567778888888888888762
Q ss_pred CCceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 369 PNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 369 p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+....+. |.++++.++......+..++++.|.+ +||.+.++. .+++||+++. +++++++++++|.++
T Consensus 320 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 320 ---WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp ---CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred ---CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 1223445 44566655321000146789999875 599998752 5799999765 899999999999999
Q ss_pred HhcccCCC
Q 012138 441 LELDLPKM 448 (470)
Q Consensus 441 l~~~~~~~ 448 (470)
++ ++..+
T Consensus 395 l~-~~~~~ 401 (412)
T 2x5d_A 395 FR-ADGLL 401 (412)
T ss_dssp HH-HTTCC
T ss_pred HH-hcCCc
Confidence 99 76543
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=276.95 Aligned_cols=337 Identities=11% Similarity=0.077 Sum_probs=238.3
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc---cccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGte 143 (470)
..|+++|||.++... ++ .+|.+.+++.++++.. .+.......++++.+++++.+.+|. ++|++++||++
T Consensus 44 ~~g~~~idl~~g~~~--~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGIPD--GP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCSCS--SC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 357889999988653 45 6899999999887432 1111112223444555555444464 57999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
|++.+++.+.. +|+ .|++..++||+........+.. .... +..++... .|+++|+++++.
T Consensus 121 al~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~-~~~v---~~~~~~~~---~d~~~l~~~l~~--- 180 (404)
T 2o1b_A 121 GLVAVPTCVIN---------PGD-YVLLPDPGYTDYLAGVLLADGK-PVPL---NLEPPHYL---PDWSKVDSQIID--- 180 (404)
T ss_dssp HHHHHHHHHCC---------TTC-EEEEEESCCSSHHHHHHHTTCE-EEEE---ECCTTTCC---CCGGGSCHHHHH---
T ss_pred HHHHHHHHhcC---------CCC-EEEEcCCCchhHHHHHHHCCCE-EEEe---ccCcccCc---CCHHHHHHhhcc---
Confidence 99999997743 454 7888999999876554333221 1111 11110111 278899988875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC----CCCcceeecccccc-CC
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE----EVRPDMVILGKALG-GG 298 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~----~~~pdi~s~sK~l~-gG 298 (470)
++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|........ +....+.++||.++ +|
T Consensus 181 ~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 259 (404)
T 2o1b_A 181 KTKLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG 259 (404)
T ss_dssp HEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG
T ss_pred CceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch
Confidence 788888766699999998 8999999999999999999999999988766532211111 22334669999998 89
Q ss_pred CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+ |+|++++++++++.+.......+++.++++++++.++|+..++ ++++++++++++++.+.|++++ +....
T Consensus 260 ~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 332 (404)
T 2o1b_A 260 F-RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKAD------LPFVH 332 (404)
T ss_dssp G-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT------CCEEC
T ss_pred h-heEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC------CeecC
Confidence 8 9999999999998887655556778899999999888876322 4456667777777777777641 33344
Q ss_pred ccce-eEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 GRGL-FNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~~g~-~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.+. ++++.+... .+..+++++|. ++||.+.++. .+++||+++. +++++++++++|.++++ +.
T Consensus 333 ~~~g~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~-~~ 403 (404)
T 2o1b_A 333 AKGGIYVWLETPPG---YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAY-LY 403 (404)
T ss_dssp CCBSSEEEEECCTT---CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGG-GG
T ss_pred CCcceEEEEeCCCC---CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHH-hh
Confidence 5544 466666432 25678899987 5699998752 5799999764 78899999999999887 54
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=265.52 Aligned_cols=336 Identities=13% Similarity=0.110 Sum_probs=230.8
Q ss_pred ceEEEeecCCEEEe-CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCe
Q 012138 58 PIVFSQAKGSSIWD-PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDM 134 (470)
Q Consensus 58 p~~~~~~~g~~~~d-~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~ 134 (470)
++++.+|.+.+.++ .+|+++|||.++... ++ .+|++.+++.++++....+ ..+...+++++++++++ .++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~~--~~-~~~~v~~a~~~~~~~~~~y----~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNINP--LG-IPKSFLNNIDEGIKNLGVY----PDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCCT--TC-SCHHHHTTHHHHHHGGGSC----CCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCCC--CC-CCHHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHhCCCcce
Confidence 45566666655554 489999999998644 33 6899999999998874332 33445889999999886 468
Q ss_pred EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHH
Q 012138 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 214 (470)
Q Consensus 135 v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L 214 (470)
+++|+||++|++.+++.+ +.|++..++|++........+..... .+..++ ..+ ++++|
T Consensus 81 i~~~~g~t~al~~~~~~~--------------d~vi~~~~~~~~~~~~~~~~g~~~~~----~~~~~~-~~~---~~~~l 138 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF--------------EKILIIVPSYAEYEINAKKHGVSVVF----SYLDEN-MCI---DYEDI 138 (361)
T ss_dssp EEEESSHHHHHHHHHTTC--------------SEEEEEESCCTHHHHHHHHTTCEEEE----EECCTT-SCC---CHHHH
T ss_pred EEEcCCHHHHHHHHHHHc--------------CcEEEecCChHHHHHHHHHcCCeEEE----eecCcc-cCC---CHHHH
Confidence 999999999999998754 27888999998765544433221111 010000 011 67889
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc---eeec
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD---MVIL 291 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd---i~s~ 291 (470)
++++++ +++|+++.++||+|.++ +.+++++|.++|++||+++|+||+|+++.+.+........+..++ +.++
T Consensus 139 ~~~l~~----~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 213 (361)
T 3ftb_A 139 ISKIDD----VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAM 213 (361)
T ss_dssp HHHTTT----CSEEEEETTBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEES
T ss_pred HHhccC----CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeC
Confidence 988864 55666554599999999 888999999999999999999999998766421222222222223 3489
Q ss_pred ccccc-CCCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 292 GKALG-GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
||.++ +|+ |+|+++ +++++++.+... ..+++.++++++++.++|+..+. ++.+++.+++.+++.+.|++ +
T Consensus 214 sK~~~~~G~-r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~ 286 (361)
T 3ftb_A 214 TKFFAMPGI-RFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK----I 286 (361)
T ss_dssp SSTTSCGGG-CCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH----S
T ss_pred hhhcCCCCc-ceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----C
Confidence 99998 888 999998 899999888753 34678899999999888763211 33455555666666666554 4
Q ss_pred CCceE-EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 369 PNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 369 p~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
| .+. ..++.|.++++.+.. . +..++++.|.++||.+.++. .+++|++++ ++++++++++.|+++.
T Consensus 287 ~-~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 287 G-FIKRVFSPHANFVLCRLEN-I---SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVE 358 (361)
T ss_dssp S-SEEEEECCSSSEEEEEESS-S---CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred C-CCceecCCCCeEEEEEcCC-C---CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 3 465 677889888887754 2 57889999999999998753 689999954 8889999999998877
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
+
T Consensus 359 ~ 359 (361)
T 3ftb_A 359 N 359 (361)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=272.96 Aligned_cols=323 Identities=12% Similarity=0.035 Sum_probs=232.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVET 147 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~ 147 (470)
+| .+|||.++... ++ .+|.+.+++.+++.....++. ....++++++++++.+.+|. +++++|+||++|++.
T Consensus 22 ~g-~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~ 97 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQ--FE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFN 97 (376)
T ss_dssp SS-CCCBCSSCCCC--SC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHH
T ss_pred cC-CEEEeCCCCCC--CC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHH
Confidence 56 88999988644 33 689999999988744332222 12345566777777666553 689999999999999
Q ss_pred HHHHHHHhchhcccCCC-CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc
Q 012138 148 ALKLARKWGYVKKKFSI-DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES 221 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~-g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~ 221 (470)
+++.+.. + +++.|++..++|++........+.. +..++.+ ++ +|++++.+
T Consensus 98 ~~~~~~~---------~~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~-~l~~~~~~- 153 (376)
T 3ezs_A 98 FPSFVLF---------DYQNPTIAYPNPFYQIYEGAAKFIKAK-------------SLLMPLTKENDFTP-SLNEKELQ- 153 (376)
T ss_dssp HHHHHTT---------TCSSCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTSCC-CCCHHHHH-
T ss_pred HHHHHcC---------CCCCCEEEEecCCcHhHHHHHHHcCCE-------------EEEcccCCCCCcch-hHHhhhcc-
Confidence 9998754 3 1348889999998765544333221 1222222 22 56666765
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc---------cCCCCcceeecc
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD---------WEEVRPDMVILG 292 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~---------~~~~~pdi~s~s 292 (470)
++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|+++.+.+...... ..+..+.+.|+|
T Consensus 154 --~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 154 --EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp --HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred --CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecch
Confidence 567777655599999999 88899999999999999999999999987777443221 344445677999
Q ss_pred cccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012138 293 KALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPN 370 (470)
Q Consensus 293 K~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~ 370 (470)
|.++ +|+ |+|++++++++++.+.......+++.++++++++.++++..+. +...++++++.+++.+.|+ .
T Consensus 231 K~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~--- 302 (376)
T 3ezs_A 231 KRSSAPGL-RSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK----N--- 302 (376)
T ss_dssp TTTTCGGG-CCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST----T---
T ss_pred hccCCccc-eeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc----C---
Confidence 9997 898 9999999999999887666667888999999999888874211 3344444445555544443 1
Q ss_pred ceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 371 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+. .+..|.++++.+. +..++++.|.+ +||.+.|+ ..+++||+++ .+++++++++++|.+++
T Consensus 303 -~~-~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 303 -TL-IYPYSFYVYLPVQ------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYR 372 (376)
T ss_dssp -CC-CCSBSSEEEEECS------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred -CC-CCCcceEEEEECC------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHH
Confidence 22 3456666666554 36788999988 79999763 4689999965 49999999999999999
Q ss_pred hccc
Q 012138 442 ELDL 445 (470)
Q Consensus 442 ~~~~ 445 (470)
+ +.
T Consensus 373 ~-~~ 375 (376)
T 3ezs_A 373 E-NH 375 (376)
T ss_dssp C-C-
T ss_pred H-hc
Confidence 8 54
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=271.95 Aligned_cols=344 Identities=13% Similarity=0.139 Sum_probs=242.8
Q ss_pred EeCCCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhC-------CCeEEecCC
Q 012138 70 WDPEGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFG-------YDMVLPMNT 140 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~-------~~~v~~~~s 140 (470)
.+.+|+.+|||..|.... +..+.+|.+.+++.++++..... .| ......++++.++++++ .+++++|+|
T Consensus 49 ~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g 126 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSG 126 (427)
T ss_dssp CCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESS
T ss_pred cccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecC
Confidence 345678899999886322 12457899999999998864321 12 22335677777777665 468999999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFK 219 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~ 219 (470)
|++|++.+++.+.. +|+ .|++..++|++........+..... .++.+ +...+ |+++|+++++
T Consensus 127 ~t~al~~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~---d~~~l~~~l~ 189 (427)
T 3dyd_A 127 CSQAIDLCLAVLAN---------PGQ-NILVPRPGFSLYKTLAESMGIEVKL----YNLLPEKSWEI---DLKQLEYLID 189 (427)
T ss_dssp HHHHHHHHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTCEEEE----EEEEGGGTTEE---CHHHHHSSCC
T ss_pred cHHHHHHHHHHhcC---------CCC-EEEEcCCCchhHHHHHHHcCCEEEE----EecccccCCCC---CHHHHHHHhc
Confidence 99999999998754 454 7888999998765544433321110 00000 01112 7899998886
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCccee---eccccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDMV---ILGKAL 295 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~pdi~---s~sK~l 295 (470)
+ ++++|++..++||+|.++ +++++++|.++|++||+++|+||+|++|++.|..+ ....++..++++ ||||.+
T Consensus 190 ~---~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~ 265 (427)
T 3dyd_A 190 E---KTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW 265 (427)
T ss_dssp T---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS
T ss_pred c---CCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC
Confidence 5 677777555599999999 89999999999999999999999999998877543 344444455555 999996
Q ss_pred c-CCCcceeEEEec-------HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHH
Q 012138 296 G-GGVIPVSAVLAD-------KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 296 ~-gG~~~ig~v~~~-------~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l 364 (470)
+ +|+ |+|+++++ +++++.+.... ..+++.++++++++.++|+.... ++..++++++++++.+.|+++
T Consensus 266 ~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (427)
T 3dyd_A 266 LVPGW-RLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI 343 (427)
T ss_dssp SCGGG-CCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCc-ceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 788 99999987 46776665432 23678899999999998885322 345566666677777776653
Q ss_pred HhhCCCceEEEecc-ceeEEEEeccCCC--chhHHHHHHHHH-HcCceeccC----CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGR-GLFNAVEFDKTAL--PVSAYDICLKMK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 365 ~~~~p~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~l~-~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
| .+..+.+. |.++++.++.... ..+..+++++|+ ++||++.|+ .++++|+++ .+++++|++++++
T Consensus 344 ----~-g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~ 416 (427)
T 3dyd_A 344 ----P-GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSR 416 (427)
T ss_dssp ----T-TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHH
T ss_pred ----C-CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHH
Confidence 3 45555455 4455555642110 125678888886 779999876 368999994 5899999999999
Q ss_pred HHHHHhcccC
Q 012138 437 LHDVLELDLP 446 (470)
Q Consensus 437 l~~~l~~~~~ 446 (470)
|.++++ +++
T Consensus 417 l~~~l~-~~~ 425 (427)
T 3dyd_A 417 IQEFCE-QHY 425 (427)
T ss_dssp HHHHHH-HHC
T ss_pred HHHHHH-Hhh
Confidence 999998 764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=269.57 Aligned_cols=321 Identities=12% Similarity=0.122 Sum_probs=231.8
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.++||.++.. ++++ +|.+.+++.++++.....+. ....++++.+++++.+.++ .+++++++||++|++
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 3677899988864 3554 79999999999875321111 1122344555555544332 368999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
.+++++.. +|+ .|++..++||+........+.. +..++ .|+++|++++++ +++
T Consensus 104 ~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~-------------~~~v~-~d~~~l~~~l~~---~~~ 156 (370)
T 2z61_A 104 FALSSIID---------DGD-EVLIQNPCYPCYKNFIRFLGAK-------------PVFCD-FTVESLEEALSD---KTK 156 (370)
T ss_dssp HHHHHHCC---------TTC-EEEEESSCCTHHHHHHHHTTCE-------------EEEEC-SSHHHHHHHCCS---SEE
T ss_pred HHHHHhcC---------CCC-EEEEeCCCchhHHHHHHHcCCE-------------EEEeC-CCHHHHHHhccc---Cce
Confidence 99998743 454 8899999998866544332211 23333 489999998875 788
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC----CCCcceeecccccc-CCCcc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE----EVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~----~~~pdi~s~sK~l~-gG~~~ 301 (470)
+|+++.++||+|.+++ ++ |.++|++||++||+||+|+++.+.|.......+ +....+.++||.++ +|+ |
T Consensus 157 ~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 230 (370)
T 2z61_A 157 AIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGW-R 230 (370)
T ss_dssp EEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGG-C
T ss_pred EEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccc-e
Confidence 8887777999999996 55 999999999999999999987766644333222 22223559999998 888 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
+|++++++++++.+.......+++.++++++++.++|+. ..+ +++.++++++++++.+.|++++ +....+.
T Consensus 231 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~ 304 (370)
T 2z61_A 231 IGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFG------WEVNNPI 304 (370)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CBCCCCC
T ss_pred EEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcC------CeecCCC
Confidence 999999999998887655666778899999998888865 222 4566777888888888887752 1222344
Q ss_pred cee-EEEEeccCCCchhHHHHHHHHH-HcCceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLF-NAVEFDKTALPVSAYDICLKMK-ERGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~-~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+ +++.+.. +..++.+.|. ++||.+.++ ..+++|++++ ++++++++++++|.++++
T Consensus 305 ~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 305 GAYYVFPNIGE-----DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp BTTEECCBCSS-----CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred cceEEEEecCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 444 4444432 4678999997 679999875 2679999977 799999999999999876
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=267.20 Aligned_cols=315 Identities=13% Similarity=0.114 Sum_probs=230.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
+.+|||.++... ++ .+|++.+++.++++.... +......+++++++++++. +++++++||++|++.+++.+
T Consensus 32 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~ 104 (363)
T 3ffh_A 32 TKITKLSSNENP--LG-TSKKVAAIQANSSVETEI----YPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL 104 (363)
T ss_dssp SCCEECSSCSCT--TC-CCHHHHHHHHTCBSCCCB----C----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEccCCCCC--CC-CCHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH
Confidence 568999988543 33 789999999887654322 2334457889999988874 68999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAG 227 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~ 227 (470)
.. +|+ .|++..++|++........+.. +..++++ |+++|++++++ ++++
T Consensus 105 ~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~~---~~~~ 158 (363)
T 3ffh_A 105 LD---------TTT-NTVMATPTFVQYRQNALIEGAE-------------VREIPLLQDGEHDLEGMLNAIDE---KTTI 158 (363)
T ss_dssp CS---------TTC-EEEEEESSCHHHHHHHHHHTCE-------------EEEEECCTTSCCCHHHHHHHCCT---TEEE
T ss_pred cc---------CCC-EEEEcCCChHHHHHHHHHcCCE-------------EEEecCCCCCCcCHHHHHHhccc---CCCE
Confidence 43 454 7888889988755443332221 1233333 89999999875 7888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc----eeecccccc-CCCcce
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD----MVILGKALG-GGVIPV 302 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd----i~s~sK~l~-gG~~~i 302 (470)
|+++.++||+|.++ +.+++.+|.+.|++ |+++|+||+|++|++ +...........+| +.++||.++ +|+ |+
T Consensus 159 v~~~~p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~ 234 (363)
T 3ffh_A 159 VWICNPNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASA-RV 234 (363)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSC-CC
T ss_pred EEEeCCCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchh-ce
Confidence 88777799999999 66666666666666 999999999998876 54432222211223 558999998 898 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
|++++++++++.+.... .+++.++++++++.++|+..+. ++..++.+++.+++.+.|++. + .+...++.|.+
T Consensus 235 G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~-g~~~~~~~~~~ 307 (363)
T 3ffh_A 235 GYGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF----E-KVKLYPANGNF 307 (363)
T ss_dssp EEEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC----T-TCEECCCCSSE
T ss_pred eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC----C-CceECCCCCeE
Confidence 99999999998887543 3678999999999998863321 345556666666666666552 1 34455677888
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+++.+.. +..++.+.|.++||.+.++. ++++|++++ +++|+++++++|++++
T Consensus 308 ~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 308 VLIDLGI-----EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp EEEECSS-----CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred EEEECCC-----CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 7776643 57789999999999998764 689999954 9999999999998864
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=272.89 Aligned_cols=340 Identities=15% Similarity=0.128 Sum_probs=240.5
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~ 150 (470)
++.+|||.++... +.++++|++.+++.++++........|. .....++++.+++++|. ++|++++||++|++.+++
T Consensus 31 ~~~~i~l~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPA-PELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCC-GGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCC-chhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 4568899888654 3577889999999998876321111121 22357788888887764 689999999999999999
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL- 229 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi- 229 (470)
++.. +|+ .|++..++||+........+. ..... +..++ .+ |+++|++++++. ++++|+
T Consensus 110 ~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~-~~~~~---~~~~~--~~---d~~~l~~~l~~~--~~~~v~~ 168 (397)
T 2zyj_A 110 VFLD---------EGS-PVLLEAPSYMGAIQAFRLQGP-RFLTV---PAGEE--GP---DLDALEEVLKRE--RPRFLYL 168 (397)
T ss_dssp HHCC---------TTC-EEEEEESCCHHHHHHHHTTCC-EEEEE---EEETT--EE---CHHHHHHHHHHC--CCSCEEE
T ss_pred HhCC---------CCC-EEEEeCCCcHHHHHHHHHcCC-EEEec---CcCCC--CC---CHHHHHHHHhhc--CCeEEEE
Confidence 7743 454 788899999886654433222 11100 10011 12 899999999863 566764
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC------CCCcceeeccccccCCCcce
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE------EVRPDMVILGKALGGGVIPV 302 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~------~~~pdi~s~sK~l~gG~~~i 302 (470)
+..++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. .....+ +....+.++||.+++|+ |+
T Consensus 169 ~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~ 246 (397)
T 2zyj_A 169 IPSFQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL-RV 246 (397)
T ss_dssp CCBSCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG-CC
T ss_pred CCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc-ee
Confidence 444699999998 8899999999999999999999999988776653 222222 22234569999999998 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-cc
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GR 378 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~ 378 (470)
|++++++++++.+.......+++.++++++++.++|+... + +.+.++++++.+++.+.|++. +|..+.... ..
T Consensus 247 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~~~~ 323 (397)
T 2zyj_A 247 AFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTRPKG 323 (397)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECCCSB
T ss_pred EEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEccCCc
Confidence 9999999999888655555567778999988888776421 1 334455556666666666553 221233333 45
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|.++++.+... .+..++++.|.++||.+.++ ..+++||+++.. +++++++++++|.++++ ++
T Consensus 324 g~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~ 393 (397)
T 2zyj_A 324 GMFVWMELPKG---LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK-GL 393 (397)
T ss_dssp SSEEEEECSTT---CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred cEEEEEEcCCC---CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH-HH
Confidence 66677766432 25788999999999999864 357999998764 89999999999999987 64
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=269.00 Aligned_cols=335 Identities=13% Similarity=0.120 Sum_probs=235.8
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCe-EEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDM-VLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~-v~~~~sGteA~~~a 148 (470)
.++||.++... ++ .+|++.+++.++++.....+. ....++++.+++++.+.+| .++ +++|+||++|++.+
T Consensus 27 ~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~ 103 (389)
T 1gd9_A 27 DVISLGIGEPD--FD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMG 103 (389)
T ss_dssp SCEECCCCSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHH
T ss_pred CeEecCCCCCC--CC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHH
Confidence 57888887643 44 689999999999876322111 1123344555555554445 467 99999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
++.+.. +|+ .|++..++||+........+. .... .+..++ ...+ |+++|++++++ ++++
T Consensus 104 ~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~g~-~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~~~ 163 (389)
T 1gd9_A 104 LSAFLK---------DGE-EVLIPTPAFVSYAPAVILAGG-KPVE---VPTYEEDEFRL---NVDELKKYVTD---KTRA 163 (389)
T ss_dssp HTTTCC---------TTC-EEEEEESCCTTHHHHHHHHTC-EEEE---EECCGGGTTCC---CHHHHHHHCCT---TEEE
T ss_pred HHHhCC---------CCC-EEEEcCCCchhHHHHHHHCCC-EEEE---eccCCccCCCC---CHHHHHHhcCc---CceE
Confidence 987643 344 888999999886544332221 1110 011000 0111 89999998875 6888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC-ccccccC-CC-Ccc--eeecccccc-CCCcc
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWE-EV-RPD--MVILGKALG-GGVIP 301 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~-~~~~~~~-~~-~pd--i~s~sK~l~-gG~~~ 301 (470)
|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|. ......+ +. ..| +.++||.++ +|+ |
T Consensus 164 v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 241 (389)
T 1gd9_A 164 LIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW-R 241 (389)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG-C
T ss_pred EEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCccc-c
Confidence 88777799999998 899999999999999999999999998877664 2222222 21 224 458999998 888 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
+|++++++++++.+.......+++.++++++++.++|+.... +.+.++++++++++.+.|++++ + ....+
T Consensus 242 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~----~~~~~ 315 (389)
T 1gd9_A 242 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG--L----PTVKP 315 (389)
T ss_dssp CEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--C----CCCCC
T ss_pred eEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcC--C----eecCC
Confidence 999999999998887666666788899999998888875332 4456667777788888777652 1 12234
Q ss_pred c-ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 378 R-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 378 ~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
. |.++++.+.... .+..++++.|. ++||.+.++. .+++||+++ .+++++++++++|.++++ +.+
T Consensus 316 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~-~~~ 387 (389)
T 1gd9_A 316 KGAFYIFPRIRDTG--LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLK-ERK 387 (389)
T ss_dssp CBTTEECCBCGGGT--CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-HTT
T ss_pred CeeeEEEEeccCCC--CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-hcc
Confidence 4 444444553211 25778999998 8899998752 679999966 499999999999999998 654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.90 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=236.7
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc------ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT------LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGte 143 (470)
++.+|||.++. +....+|++.+++.++++... +.......++++++++++.+.+| .++|++|+||++
T Consensus 34 ~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGN---PSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCC---CCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCC---CCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 45789999883 333478999999999987631 11112223556677777766554 468999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
|++.+++.+.. +|++.|++..++|++........+... .. .+..++...+ |+++|++++++
T Consensus 111 al~~~~~~l~~---------~g~d~vl~~~p~~~~~~~~~~~~g~~~-~~---v~~~~~~~~~---d~~~l~~~l~~--- 171 (398)
T 3ele_A 111 SLSICFRALTS---------DAYDEFITIAPYFPEYKVFVNAAGARL-VE---VPADTEHFQI---DFDALEERINA--- 171 (398)
T ss_dssp HHHHHHHHHCC---------STTCEEEEESSCCTHHHHHHHHTTCEE-EE---ECCCTTTSSC---CHHHHHHTCCT---
T ss_pred HHHHHHHHHcC---------CCCCEEEEeCCCchhhHHHHHHcCCEE-EE---EecCCcCCcC---CHHHHHHHhCc---
Confidence 99999998754 462488899999987655443332211 10 1111111122 89999998875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHh------cCcEEEEeccccCCcccCCcc--ccccCCCCcceeeccccc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNILMIADEIQSGLARSGRML--ASDWEEVRPDMVILGKAL 295 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~------~gillI~Dev~~g~g~~G~~~--~~~~~~~~pdi~s~sK~l 295 (470)
++++|+++.++||+|.++ +.+.+++|+++|++ ||++||+||+|++|.+.|... ..+.++....+.|+||.+
T Consensus 172 ~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 250 (398)
T 3ele_A 172 HTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL 250 (398)
T ss_dssp TEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS
T ss_pred CCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC
Confidence 788888766699999999 88889999999999 999999999999987776432 123334444566999999
Q ss_pred c-CCCcceeEEEecHHHHh------hcCcC-CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 296 G-GGVIPVSAVLADKEVML------CIQPG-EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 296 ~-gG~~~ig~v~~~~~~~~------~~~~~-~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
+ +|+ |+|++++++++++ .+... ....+++.++++++++.+.++ .....++++++++++.+.|++++
T Consensus 251 ~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~g-- 324 (398)
T 3ele_A 251 SLPGE-RIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRIG-- 324 (398)
T ss_dssp SCTTT-CCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHHT--
T ss_pred CCccc-eeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHcC--
Confidence 8 898 9999999887433 22211 122356677777777655543 33456788888899999988762
Q ss_pred CCCceEEEecccee-EEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 368 FPNYVKEVRGRGLF-NAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 368 ~p~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+....+.|.+ +++.+.. .+..++++.|.++||.+.++. ++++||++ .+++++|++++++|.++++
T Consensus 325 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 325 ----YHCFKPDGAFYMFVKALE----DDSNAFCEKAKEEDVLIVAADGFGCPGWVRISY--CVDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp ----CCEECCSBSSEEEEECSS----SCHHHHHHHHHTTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHH
T ss_pred ----CeecCCCeeEEEEEEcCC----CCHHHHHHHHHHCCEEEeCccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence 2334455555 5554432 257789999999999998764 68999996 4799999999999999998
Q ss_pred cccC
Q 012138 443 LDLP 446 (470)
Q Consensus 443 ~~~~ 446 (470)
+++
T Consensus 395 -~~~ 397 (398)
T 3ele_A 395 -KYN 397 (398)
T ss_dssp -HHC
T ss_pred -Hhh
Confidence 764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=269.68 Aligned_cols=339 Identities=14% Similarity=0.155 Sum_probs=235.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc----ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT----LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVE 146 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA~~ 146 (470)
.+|||..+.... ..+|.+.+++.++++... +.......++++.+++++.+.++. ++|++|+||++|++
T Consensus 29 ~~i~l~~g~~~~---~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~ 105 (422)
T 3fvs_A 29 DVVNLGQGFPDF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALF 105 (422)
T ss_dssp CCEECCCSSCSS---CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHH
T ss_pred CceEeCCCCCCC---CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHH
Confidence 578898886432 378999999999987632 111112234566666666665543 57999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC--------CCCeeeecCCCHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL--------LPGHLKVDFGDITALEKIF 218 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d~~~Le~~l 218 (470)
.+++.+.. +|+ .|++..++||+........+... ...+..+. ..+.+.+ |+++|++++
T Consensus 106 ~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~G~~~~~~~~~~---d~~~l~~~~ 171 (422)
T 3fvs_A 106 TAFQALVD---------EGD-EVIIIEPFFDCYEPMTMMAGGRP-VFVSLKPGPIQNGELGSSSNWQL---DPMELAGKF 171 (422)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEE-EEEECBCCCCCSSSCCBGGGSBC---CHHHHHTTC
T ss_pred HHHHHHcC---------CCC-EEEEcCCCchhhHHHHHHcCCEE-EEEecccccccccccccccCCCC---CHHHHHhhc
Confidence 99997743 454 78889999988654433322211 11111000 0001122 899999888
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC----CCCcceeeccc
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE----EVRPDMVILGK 293 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~----~~~pdi~s~sK 293 (470)
++ ++++|+++.++||+|.++ +++++++|.++|++||++||+||+|++|.++|... .+..+ +....+.|+||
T Consensus 172 ~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 247 (422)
T 3fvs_A 172 TS---RTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGK 247 (422)
T ss_dssp CT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHH
T ss_pred CC---CceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchh
Confidence 65 788888777799999999 89999999999999999999999999988777432 22222 22244568999
Q ss_pred ccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-------Hhh--hhHHHHHHHHHHHHHHHHHH
Q 012138 294 ALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-------IRD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 294 ~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-------~~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
.++ +|+ |+|++++++++++.+.......+++.++++++++.++++. ..+ +++.++++++++++.+.|++
T Consensus 248 ~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 326 (422)
T 3fvs_A 248 TFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS 326 (422)
T ss_dssp HHTCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccc-eEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 898 9999999999998887666677888999999999988875 111 34556666677777777665
Q ss_pred HHhhCCCceEEEec-cceeEEEEeccCCC----------chhHHHHHHHHHH-cCceeccC-----------CCCEEEEe
Q 012138 364 IQQQFPNYVKEVRG-RGLFNAVEFDKTAL----------PVSAYDICLKMKE-RGILAKPT-----------HDTIVRLT 420 (470)
Q Consensus 364 l~~~~p~~~~~~~~-~g~~~~~~~~~~~~----------~~~~~~~~~~l~~-~Gv~~~~~-----------~~~~iR~~ 420 (470)
+ .+....+ .|.++++.+..... .....++++.|++ +||.+.|+ +.+++||+
T Consensus 327 ~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis 400 (422)
T 3fvs_A 327 V------GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFC 400 (422)
T ss_dssp T------TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEE
T ss_pred c------CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEE
Confidence 3 2333344 45555554432100 0005578887665 59998774 25899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 421 PPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+..++++|++++++|+++++ ++
T Consensus 401 --~~~~~e~i~~~l~~l~~~l~-~l 422 (422)
T 3fvs_A 401 --FVKDEATLQAMDEKLRKWKV-EL 422 (422)
T ss_dssp --CCCCHHHHHHHHHHHHHHHH-CC
T ss_pred --ecCCHHHHHHHHHHHHHHHh-hC
Confidence 45599999999999999987 53
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=268.30 Aligned_cols=331 Identities=14% Similarity=0.153 Sum_probs=234.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
.|+.++||.++.. +++ .+|.+.+++.++++.....+. ....++++++++++.+.+| .+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 4778899988864 345 479999999998865321111 1122334455555544435 358999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..++|++........+. .... .+..+ +...+ |+++|++++++ ++
T Consensus 116 ~~~~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~-~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~ 175 (389)
T 1o4s_A 116 NAFMALLD---------PGD-EVIVFSPVWVSYIPQIILAGG-TVNV---VETFMSKNFQP---SLEEVEGLLVG---KT 175 (389)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTC-EEEE---EECCGGGTTCC---CHHHHHHTCCT---TE
T ss_pred HHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCC-EEEE---EecCCccCCCC---CHHHHHHhccc---Cc
Confidence 99998743 454 788899999876544332221 1110 01000 00111 78999988865 78
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc----CCCCcceeecccccc-CCCc
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW----EEVRPDMVILGKALG-GGVI 300 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~----~~~~pdi~s~sK~l~-gG~~ 300 (470)
++|+++.++||+|.++ +++++++|.++|++||++||+||+|+++.+.|....... .+....+.++||.++ +|+
T Consensus 176 ~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~- 253 (389)
T 1o4s_A 176 KAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW- 253 (389)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG-
T ss_pred eEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCccc-
Confidence 8888777799999998 889999999999999999999999998776654322221 222233558999998 888
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-c
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-G 379 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g 379 (470)
|+|++++++++++.+.......+++.++++++++.++|+.. .+++.++++++++++.+.|++++ +. . ..+. |
T Consensus 254 r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~g--~~-~---~~~~~~ 326 (389)
T 1o4s_A 254 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKMG--VK-F---VEPEGA 326 (389)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHTT--CC-C---CCCSBS
T ss_pred ceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhcC--Ce-e---ecCCcc
Confidence 99999999999888876555567788899888887776532 35677888888889988888752 21 1 2234 4
Q ss_pred eeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++++.+. . +..++.+.|+ ++||.+.++. ++++|++++ .+++++++++++|.++++
T Consensus 327 ~~~~~~~~--~---~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 327 FYLFFKVR--G---DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SEEEEECS--S---CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCC--C---CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 44555554 2 5678999997 7899998763 579999976 499999999999999886
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=270.11 Aligned_cols=341 Identities=13% Similarity=0.065 Sum_probs=236.0
Q ss_pred CCCCeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHH
Q 012138 72 PEGNKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEG 144 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA 144 (470)
.+|+.++||..+.... .++ .+|++.+++.++++.....+ .....++++.+++++.+..+ .+++++|+||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 3578899999886532 344 57999999999887543111 11123345555555554433 3689999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++.+++.+.. +|+ .|++..++|++........+..... .+..+ +...+ |+++|++++++
T Consensus 114 l~~~~~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~~~~---d~~~l~~~l~~--- 173 (406)
T 1xi9_A 114 LQLIFGALLD---------PGD-EILVPGPSYPPYTGLVKFYGGKPVE----YRTIEEEDWQP---DIDDIRKKITD--- 173 (406)
T ss_dssp HHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHTTCEEEE----EEEEGGGTSEE---CHHHHHHHCCT---
T ss_pred HHHHHHHhCC---------CCC-EEEEcCCCCccHHHHHHHcCCEEEE----eecCCCcCCcC---CHHHHHHhhCc---
Confidence 9999997743 454 8888999998765444322211100 00000 00112 89999999875
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCc-ce--eecccccc-CCC
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP-DM--VILGKALG-GGV 299 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~p-di--~s~sK~l~-gG~ 299 (470)
++++|++++++||+|.++ +++++++|.++|++||++||+||+|+++.+.+....+..++... ++ .++||.++ +|+
T Consensus 174 ~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 252 (406)
T 1xi9_A 174 RTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW 252 (406)
T ss_dssp TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG
T ss_pred CceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCcc
Confidence 788888777799999998 88999999999999999999999999876644333333332111 33 37899998 788
Q ss_pred cceeEEE--ecH----HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 300 IPVSAVL--ADK----EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 300 ~~ig~v~--~~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
|+|+++ +++ ++++.+....... ++.++++++++.++|+...+ +++.++++++++++.+.|+++ | .
T Consensus 253 -r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~ 325 (406)
T 1xi9_A 253 -RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----P-G 325 (406)
T ss_dssp -CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----T-T
T ss_pred -EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----C-C
Confidence 999999 898 8888876543333 77888999988888863322 446667777777777777653 2 3
Q ss_pred eEEEeccceeEE-EEeccCCCchhHHHHHHHHH-HcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 012138 372 VKEVRGRGLFNA-VEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLEL 443 (470)
Q Consensus 372 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 443 (470)
+....+.+.++. +.+.... +.+..++++.|. ++||.+.++. .+++||+++ ++++++++++++|.++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~- 401 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP-WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMK- 401 (406)
T ss_dssp EECCCCCBSSEECCEECSCS-CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-
T ss_pred CeeecCCeeEEEEEecCccC-CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-
Confidence 443445554444 4554310 125778999987 7899988753 679999976 899999999999999998
Q ss_pred cc
Q 012138 444 DL 445 (470)
Q Consensus 444 ~~ 445 (470)
++
T Consensus 402 ~~ 403 (406)
T 1xi9_A 402 ER 403 (406)
T ss_dssp HC
T ss_pred HH
Confidence 65
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=271.11 Aligned_cols=342 Identities=15% Similarity=0.113 Sum_probs=230.6
Q ss_pred EeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC---------CCCC-CCcHHHHHHHHhhhhC--------
Q 012138 70 WDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS---------RAFY-NDKFPVFAERLTSMFG-------- 131 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---------~~~~-~~~~~~l~~~l~~~~~-------- 131 (470)
||.+++.+.++..+...+++. ++.+.+++.++.....+.. ..|. .....++++.++++++
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 677776655555555444444 6777777777654332210 0111 1123566666666554
Q ss_pred --CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC
Q 012138 132 --YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 209 (470)
Q Consensus 132 --~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470)
.+++++++||++|++.+++++.. +|+ .|++..++|++.........+.. +..++++
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~~---------~gd-~vl~~~p~~~~~~~~~~~~~g~~------------~~~~~~~ 166 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLAD---------PGE-AVLIPTPYYPGFDRDLKWRTGVE------------IVPIHCT 166 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHCC---------TTC-EEEEEESCCTTHHHHTTTTTCCE------------EEEEECC
T ss_pred CCHHHEEEcCChHHHHHHHHHHhcC---------CCC-eEEECCCccccHHHHHHHhcCCE------------EEEeeCC
Confidence 57899999999999999998754 454 78889999876554332122221 1222221
Q ss_pred -------CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-
Q 012138 210 -------DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA- 278 (470)
Q Consensus 210 -------d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~- 278 (470)
|+++|+++++++ +.++++|++++++||+|.++ +.+.+++|+++|++||++||+||+|+++++.|..+.
T Consensus 167 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~ 245 (435)
T 3piu_A 167 SSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFIS 245 (435)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCC
T ss_pred CccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcC
Confidence 899999999762 23788888776699999999 888999999999999999999999998776665431
Q ss_pred cccC----CCC-----cc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-
Q 012138 279 SDWE----EVR-----PD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR- 342 (470)
Q Consensus 279 ~~~~----~~~-----pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~- 342 (470)
.... +++ +| +.+|||+++ +|+ |+|++++ ++++.+.+.. ....++.++++++++.++++...
T Consensus 246 ~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 322 (435)
T 3piu_A 246 VMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKL 322 (435)
T ss_dssp HHHHHHC-------CGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHhccccccccccCCCCCEEEEEeeecccCCCce-eEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHH
Confidence 1111 111 34 568999998 898 9999998 5677776653 33445678888888877776332
Q ss_pred --h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-eeEEEEeccCCC---chhHHHHHHHHHHc-CceeccC-
Q 012138 343 --D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKTAL---PVSAYDICLKMKER-GILAKPT- 412 (470)
Q Consensus 343 --~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g-~~~~~~~~~~~~---~~~~~~~~~~l~~~-Gv~~~~~- 412 (470)
+ ++.+++++++.+++.+.|+++ .+....+.+ .++++.+..... .....+++++|+++ ||.+.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 396 (435)
T 3piu_A 323 TKNYIAENHKRLKQRQKKLVSGLQKS------GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGS 396 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT------TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCc
Confidence 1 334455566666666666553 244445555 677776643210 11456888999888 9999864
Q ss_pred -----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 413 -----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 413 -----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.++++||+++.. +++++++++++|.++++ ++.+
T Consensus 397 ~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~-~~~~ 434 (435)
T 3piu_A 397 SCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG-EYYN 434 (435)
T ss_dssp GGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HHC-
T ss_pred ccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH-HHhC
Confidence 368999998655 99999999999999998 7653
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-31 Score=264.19 Aligned_cols=323 Identities=16% Similarity=0.179 Sum_probs=228.3
Q ss_pred EeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHH
Q 012138 70 WDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVET 147 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~ 147 (470)
++.+|++++||.++.. +++ .+|++.+++.++++.... |......++++.++++++. +++++++||++|++.
T Consensus 19 ~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 19 LGISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCIER----YPDADYFHLHQALARHHQVPASWILAGNGETESIFT 91 (364)
T ss_dssp HTSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred cCCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence 3457888999998863 356 789999999998865322 2223457888889888874 589999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----C-HHHHHHHHHhc
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----D-ITALEKIFKES 221 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~Le~~l~~~ 221 (470)
+++.+ . + +.|++..++||+........+.. +..++.+ + ++++.+.+.
T Consensus 92 ~~~~~-~----------g-d~vl~~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~~~~~-- 144 (364)
T 1lc5_A 92 VASGL-K----------P-RRAMIVTPGFAEYGRALAQSGCE-------------IRRWSLREADGWQLTDAILEALT-- 144 (364)
T ss_dssp HHHHH-C----------C-SEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTTCCCTTHHHHCC--
T ss_pred HHHHc-C----------C-CeEEEeCCCcHHHHHHHHHcCCe-------------EEEEeCCcccccchhHHHHHhcc--
Confidence 99877 3 4 47888999999876554433221 1222221 1 233333332
Q ss_pred CCCeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c-cccCCCCcceeecccccc-C
Q 012138 222 GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A-SDWEEVRPDMVILGKALG-G 297 (470)
Q Consensus 222 ~~~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~-~~~~~~~pdi~s~sK~l~-g 297 (470)
.++++|+ ++| +||+|.++ +.+++++|.++|++||++||+||+|+++++.+..+ . .+..+....+.++||.++ +
T Consensus 145 -~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 221 (364)
T 1lc5_A 145 -PDLDCLFLCTP-NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIP 221 (364)
T ss_dssp -TTCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCT
T ss_pred -CCCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCC
Confidence 3667666 566 99999998 89999999999999999999999999876544322 1 122333344569999998 8
Q ss_pred CCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 298 GVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 298 G~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
|+ |+|+++ +++++++.+.... .+++.++++++++.++|+.... +...++++++++++.+.|++ +| .+...
T Consensus 222 G~-r~G~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~-~~~~~ 293 (364)
T 1lc5_A 222 GL-RLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ----LP-LLTVY 293 (364)
T ss_dssp TT-CCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT----ST-TEEEC
T ss_pred cc-ceEEEEECCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc----CC-CCEEC
Confidence 98 999999 9999988876432 4678899999988887764111 33444555556666665544 33 35555
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++.|.++++.+.. ...++++.|.++||.+.++. .+++|+++ .++++++++++.|+++++ ++.
T Consensus 294 ~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~---~~~~~~~~l~~~l~~~~~-~~~ 361 (364)
T 1lc5_A 294 PGRANYLLLRCER-----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVLT-GIA 361 (364)
T ss_dssp CCSSSEEEEEESC-----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEECCC-----cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEe---CCHHHHHHHHHHHHHHhh-ccc
Confidence 6778888876643 23468889999999998753 57999993 468999999999999988 764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-30 Score=254.54 Aligned_cols=321 Identities=12% Similarity=0.053 Sum_probs=230.8
Q ss_pred EeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhh------hC--CCeEEecCChhHHHHHHH
Q 012138 78 LDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSM------FG--YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~--~~~v~~~~sGteA~~~al 149 (470)
|||.++.. +++ .+|++.+++.++++........|......++++.++++ .+ .+++++++|+++|++.++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89988864 344 78999999999987642111122222224566655555 33 367999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
+.+.. +|+ .|++..++||+........+.. .... +...+ .. .|+++|+++++++ ++++|+
T Consensus 110 ~~l~~---------~gd-~Vl~~~~~y~~~~~~~~~~g~~-~~~v---~~~~~-~~---~d~~~l~~~i~~~--~~~~v~ 169 (369)
T 3cq5_A 110 QAFGG---------PGR-TALGFQPSYSMHPILAKGTHTE-FIAV---SRGAD-FR---IDMDVALEEIRAK--QPDIVF 169 (369)
T ss_dssp HHHCS---------TTC-EEEEEESSCTHHHHHHHHTTCE-EEEE---ECCTT-SS---CCHHHHHHHHHHH--CCSEEE
T ss_pred HHhcC---------CCC-EEEEcCCChHHHHHHHHHcCCE-EEEe---cCCcC-CC---CCHHHHHHHhhcc--CCCEEE
Confidence 87743 454 8888999998765544333221 1100 00000 11 1799999999763 567888
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCC-CCcceeecccccc-CCCcceeEEE
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEE-VRPDMVILGKALG-GGVIPVSAVL 306 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~-~~pdi~s~sK~l~-gG~~~ig~v~ 306 (470)
+++++||+|.++| ++++.++|+.+++++|+||+|+++++....+.. +.++ ..+.+.++||.++ +|+ |+|+++
T Consensus 170 ~~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~ 244 (369)
T 3cq5_A 170 VTTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG-RLGYFV 244 (369)
T ss_dssp EESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGG-CCEEEE
T ss_pred EeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCccc-ceEEEE
Confidence 8778999999996 777788888888999999999987654222222 3334 3456779999998 898 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
+++++++.+... ..+|+.++++++++.++|+..+. +..+++++++++++.+.|++. .+...++.|.++++.
T Consensus 245 ~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~~~~~~~ 316 (369)
T 3cq5_A 245 ANPAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL------GYAVVPSESNFVFFG 316 (369)
T ss_dssp ECTHHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH------TCEEECCSSSEEEEE
T ss_pred eCHHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC------CCEECCCCCeEEEEE
Confidence 999998888643 34567899999999888875322 456777788888888888764 233446778888776
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+. . +..++.+.|.++||.+.+++ ++++|++++ +++++++++++|+++++
T Consensus 317 ~~--~---~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DF--S---DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CC--S---SHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CC--C---CHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 64 2 56789999999999998863 689999965 89999999999999886
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=267.11 Aligned_cols=334 Identities=15% Similarity=0.158 Sum_probs=233.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHc-cccC-CCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-TLSS-RAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETAL 149 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~al 149 (470)
+|||.++... ++ .+|.+.+++.++++.. ..++ .....++++++++++.+.+| .+ +|++|+||++|++.++
T Consensus 27 ~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFPD--ED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 6888887543 44 6899999999999762 1111 11123345556666655445 34 8999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC--eeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++.. +|+ .|++..++||+....... .+..... .+..++ ... .|+++|++++++ ++++
T Consensus 104 ~~~~~---------~gd-~Vl~~~~~y~~~~~~~~~-~g~~~~~---v~~~~~~~~~~---~d~~~l~~~l~~---~~~~ 163 (411)
T 2o0r_A 104 LGLVE---------PGS-EVLLIEPFYDSYSPVVAM-AGAHRVT---VPLVPDGRGFA---LDADALRRAVTP---RTRA 163 (411)
T ss_dssp HHHCC---------TTC-EEEEEESCCTTHHHHHHH-TTCEEEE---EECEEETTEEE---CCHHHHHHHCCT---TEEE
T ss_pred HHhcC---------CCC-EEEEeCCCcHhHHHHHHH-cCCEEEE---eeccccccCCC---CCHHHHHHhhcc---CceE
Confidence 97743 454 788899999886543322 2211110 011000 111 289999999875 7888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-ccccc----CCCCcceeecccccc-CCCcc
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDW----EEVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~----~~~~pdi~s~sK~l~-gG~~~ 301 (470)
|+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. ..+.. .+....+.++||.++ +|+ |
T Consensus 164 v~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r 241 (411)
T 2o0r_A 164 LIINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGW-K 241 (411)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTT-C
T ss_pred EEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccc-e
Confidence 88777799999998 8899999999999999999999999988776642 12221 233344669999998 898 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR- 378 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~- 378 (470)
+|++++++++++.+.......+++.++++++++.++|+...+ +++.++++++++++.+.|++++ +....+.
T Consensus 242 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~ 315 (411)
T 2o0r_A 242 IGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEIG------FAVHDSYG 315 (411)
T ss_dssp EEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHT------CEECCCCB
T ss_pred EEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcC------CEecCCCe
Confidence 999999999998876554555677788888888888875422 4567777888888888887752 2222333
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
|.++++.+.... ..+..+++++|. ++||.+.++ ..+++||+++ .+++++++++++|.++
T Consensus 316 g~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~ 392 (411)
T 2o0r_A 316 TYFLCADPRPLG-YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVL 392 (411)
T ss_dssp SSEEEEECGGGT-CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGG
T ss_pred eEEEEEecCCCC-CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 556666665310 024678888887 569998753 2468999964 5899999999999988
Q ss_pred Hhccc
Q 012138 441 LELDL 445 (470)
Q Consensus 441 l~~~~ 445 (470)
++ +.
T Consensus 393 ~~-~~ 396 (411)
T 2o0r_A 393 AE-RP 396 (411)
T ss_dssp GC---
T ss_pred Hh-cc
Confidence 87 54
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=261.91 Aligned_cols=325 Identities=17% Similarity=0.193 Sum_probs=234.2
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~ 153 (470)
++||.++... ++ .+|.+.+++.++++... .|. .....++++.++++++. +++++++||++|++.+++.+.
T Consensus 27 ~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFPS--NP-PPPFLLEAVRRALGRQD----QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSCS--SC-CCHHHHHHHHHHTTTSC----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCCC--CC-CCHHHHHHHHHHHHHhc----CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 6788888643 34 78999999999886511 122 22467889999988875 579999999999999999874
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
. +|+ .|++..++||+...... ..+..... .+.. ++...+ |+++|++++++ ++++|+++
T Consensus 100 ~---------~gd-~Vl~~~~~~~~~~~~~~-~~g~~~~~---v~~~~~~~~~~~---d~~~l~~~l~~---~~~~v~~~ 159 (381)
T 1v2d_A 100 G---------PGD-EVVVLEPFFDVYLPDAF-LAGAKARL---VRLDLTPEGFRL---DLSALEKALTP---RTRALLLN 159 (381)
T ss_dssp C---------TTC-EEEEEESCCTTHHHHHH-HTTCEEEE---EECEEETTEEEC---CHHHHHTTCCT---TEEEEEEE
T ss_pred C---------CCC-EEEEcCCCchhHHHHHH-HcCCEEEE---EeCCCCCccCCc---CHHHHHHhcCc---CCEEEEEC
Confidence 3 344 88889999988654332 22211110 1110 011122 89999988864 78888877
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccc--cCCCCcceeecccccc-CCCcceeEEEe
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASD--WEEVRPDMVILGKALG-GGVIPVSAVLA 307 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~--~~~~~pdi~s~sK~l~-gG~~~ig~v~~ 307 (470)
.++||+|.++ +.+++++|.++|++||++||+||+|+++.+ |.. .... ..+..+++.+++|.++ +|+ |+|++++
T Consensus 160 ~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~ 236 (381)
T 1v2d_A 160 TPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGY-RVGWIVG 236 (381)
T ss_dssp SSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGG-CCEEEEC
T ss_pred CCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCccc-ceEEEEe
Confidence 7899999998 889999999999999999999999998754 321 1111 3456667789999998 788 9999999
Q ss_pred cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-ceeE
Q 012138 308 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI--RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFN 382 (470)
Q Consensus 308 ~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g~~~ 382 (470)
++++++.+.......+++.++++++++.++|+.. ++ +++.++++++++++.+.|++++ +....+. |.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~ 310 (381)
T 1v2d_A 237 PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMG------LRVYVPEGTYFL 310 (381)
T ss_dssp CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT------CCEECCSBSSEE
T ss_pred CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCC------CEecCCCcceEE
Confidence 9998888765445557788999999998998865 32 4567778888888888887731 3333444 4555
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++.+... + +.+.|.++||.+.++ ..+++||+++. +++++++++++|.++++ +.++
T Consensus 311 ~~~~~~~----~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~-~~r~ 373 (381)
T 1v2d_A 311 MAELPGW----D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVN-SPRE 373 (381)
T ss_dssp EEECTTC----C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred EEecChH----h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHh-hccc
Confidence 5554321 2 667778889998764 36799999765 99999999999999998 7654
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=264.59 Aligned_cols=330 Identities=14% Similarity=0.149 Sum_probs=229.4
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccc-cC-CCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL-SS-RAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETA 148 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~a 148 (470)
.+|||..+.. +++ .+|.+.+++.++++.... ++ .....++++.+++++.+.+| .+ ++++|+||++|++.+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 3678888754 344 689999999999875211 11 11123345555555555445 35 899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++.+.. +|+ .|++..++||+.......... ..... +..++... .|+++|+++++. ++++|
T Consensus 108 ~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~-~~~~v---~~~~~~~~---~d~~~l~~~l~~---~~~~v 167 (386)
T 1u08_A 108 ITALVR---------NGD-EVICFDPSYDSYAPAIALSGG-IVKRM---ALQPPHFR---VDWQEFAALLSE---RTRLV 167 (386)
T ss_dssp HHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTC-EEEEE---ECCTTTCC---CCHHHHHHHCCT---TEEEE
T ss_pred HHHhCC---------CCC-EEEEeCCCchhHHHHHHHcCC-EEEEe---ecCcccCc---CCHHHHHHhhcc---cCEEE
Confidence 998743 344 888899999876543322221 11100 11000011 289999998864 78888
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc----cccc-cCCCCcceeecccccc-CCCcce
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASD-WEEVRPDMVILGKALG-GGVIPV 302 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~----~~~~-~~~~~pdi~s~sK~l~-gG~~~i 302 (470)
+++.++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|.. .... ..+..+.+.++||.++ +|+ |+
T Consensus 168 ~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~ 245 (386)
T 1u08_A 168 ILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW-KV 245 (386)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-CC
T ss_pred EEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCccc-ce
Confidence 8777799999998 8899999999999999999999999988766642 1221 2344455679999998 798 99
Q ss_pred eEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc-c
Q 012138 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-G 379 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~-g 379 (470)
|++++++++++.+.......+++.++++++++.++|+...+ ++++++++++++++.+.|+++ .+....+. |
T Consensus 246 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~g 319 (386)
T 1u08_A 246 GYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES------RLEILPCEGT 319 (386)
T ss_dssp EEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS------SCEECCCCBS
T ss_pred EEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC------CCeecCCCce
Confidence 99999999998887655556788889998888888875422 445666667777776666553 13333344 5
Q ss_pred eeEEEEeccCCCchhHHHHHHHHH-HcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.++++.+.... ..+..++++.|. ++||.+.|+ ..+++||+++ .++++|++++++|++
T Consensus 320 ~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 320 YFLLVDYSAVS-TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp SEEEEECTTTC-CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEEEEecCCCC-CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 56666654320 025678888887 579998764 3579999965 589999999999864
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=262.22 Aligned_cols=323 Identities=14% Similarity=0.136 Sum_probs=231.4
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al 149 (470)
.+|+.+|||.++.... ..+|++.+++.++++........+......++++.++++++ .+++++|+||++|++.++
T Consensus 23 ~~~~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNENPY---PPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCCSS---CCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCCCC---CCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 4678899999886432 38899999999998764211122333345789999999887 568999999999999999
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
+.+.. +|+ .|++..++|++........+.. +..++.++-..++++++.. ++++++
T Consensus 100 ~~l~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~--~~~~v~ 154 (360)
T 3hdo_A 100 RAFAA---------EGE-EIGYVHPSYSYYGTLAEVQGAR-------------VRTFGLTGDFRIAGFPERY--EGKVFF 154 (360)
T ss_dssp HHHCC---------TTC-EEEEESSSCTHHHHHHHHHTCE-------------EEEECBCTTSSBTTCCSSB--CSSEEE
T ss_pred HHHhC---------CCC-EEEEcCCChHHHHHHHHHCCCE-------------EEEeeCCCCCCHHHHHhhc--CCCEEE
Confidence 97754 455 7888999998765444333221 1222222111112222222 234666
Q ss_pred EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEec
Q 012138 230 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 230 ~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~ 308 (470)
++.++||+|.++| ++++.++|+++|++||+||+|++|...+.....+..+....+.++||.++ +|+ |+|+++++
T Consensus 155 i~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~ 229 (360)
T 3hdo_A 155 LTTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGM-RIGLAIAR 229 (360)
T ss_dssp EESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTS-CCEEEECC
T ss_pred EeCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCcc-ceeeEeeC
Confidence 5556999999998 88999999999999999999998743322222233343445669999997 888 99999999
Q ss_pred HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 309 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 309 ~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++++.+.... .+++.++++++++.++|+..+. ++..++++++.+++.+.|+++ .+...++.|.++++.+.
T Consensus 230 ~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 230 PEVIAALDKIR--DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI------GYDVIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHHHHHS--CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT------TCEECCCSSSEEEEECT
T ss_pred HHHHHHHHHhC--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC------CCEEcCCCccEEEEECC
Confidence 99998886433 4578999999999988875221 456666777777777777664 13445677888877654
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+..++.+.|.++||.+.++. .+++|+++. +++|+++++++|+++.+
T Consensus 302 ~----~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 D----RDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp T----CCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred C----CCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 2 267889999999999998764 489999943 89999999999998876
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=259.05 Aligned_cols=308 Identities=15% Similarity=0.198 Sum_probs=226.1
Q ss_pred HHHHHHHHHccccCCCCCCCcHHHHHHHHhhhh---CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEcc
Q 012138 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174 (470)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~ 174 (470)
+++.+++......+ .......++++.+++++ +.+++++++||++|++.+++++.. +|+ .|++..+
T Consensus 46 ~~~~~~~~~~~~~y--~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~---------~gd-~Vl~~~~ 113 (375)
T 3op7_A 46 EDFYKKLQGTKLNY--GWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE---------PGD-HVISLYP 113 (375)
T ss_dssp HHHHHHHHTSCCSS--CCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC---------TTC-EEEEEES
T ss_pred HHHHHHHhcCCcCC--CCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC---------CCC-EEEEeCC
Confidence 44555554433221 12233578888888875 347899999999999999997754 455 7888999
Q ss_pred CccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+|++........+... ..++.+ |+++|++++++ ++++|++++++||+|.++ +.+++
T Consensus 114 ~~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~-~~~~l 176 (375)
T 3op7_A 114 TYQQLYDIPKSLGAEV-------------DLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVM-DRTYL 176 (375)
T ss_dssp SCTHHHHHHHHTTCEE-------------EEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCC-CHHHH
T ss_pred CchhHHHHHHHcCCEE-------------EEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCC-CHHHH
Confidence 9887554333222211 122211 89999999875 788889888899999999 89999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCC
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~ 326 (470)
++|.++|++||++||+||+|+++++.+.....+.++..+++.||||.++ +|+ |+|++++++++++.+.......+++.
T Consensus 177 ~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~v~~~~~l~~~~~~~~~~~~~~~ 255 (375)
T 3op7_A 177 EELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGI-RIGWVAANHQVTDILRDYRDYTMICA 255 (375)
T ss_dssp HHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGG-CCEEEECCHHHHHHHTTTGGGTTSCC
T ss_pred HHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCccc-ceEEEEeCHHHHHHHHHHHhhhccCC
Confidence 9999999999999999999998776533333444555677889999998 898 99999999999999987777788889
Q ss_pred CHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCCCchhHHHHHHHH-
Q 012138 327 NPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTALPVSAYDICLKM- 402 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l- 402 (470)
++++++++.++++..++ +..++.++++.+.+.+.|++ +| .+..+.+.|. +.++.+.... +..++++.|
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll 327 (375)
T 3op7_A 256 GVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEE----EP-LVSYIRPAVVSTSFVKIAVDM---PMEDFCLQLL 327 (375)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----CT-TEEECCCSSSSCEEEEECCSS---CHHHHHHHHH
T ss_pred CcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh----CC-CceEecCCCeEEEeEEcCCCC---CHHHHHHHHH
Confidence 99999999888875432 33444445566666665554 32 4555555544 4555454432 677888888
Q ss_pred HHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 403 KERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 403 ~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.++||.+.|+. .+++|++ +..+++++++++++|.++++ ++.
T Consensus 328 ~~~gi~v~~g~~~~~~~~iRi~--~~~~~~~i~~~l~~l~~~l~-~~~ 372 (375)
T 3op7_A 328 QEHGVLLVPGNRFERDGYVRLG--FACEQETLIKGLEKLSQFLR-RFD 372 (375)
T ss_dssp HHHCEECEEGGGGTCTTEEEEC--CCSCHHHHHHHHHHHHHHHG-GGC
T ss_pred HhCCEEEeChhhhCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH-HHh
Confidence 47799998764 6899999 55677999999999999999 764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=255.44 Aligned_cols=332 Identities=15% Similarity=0.167 Sum_probs=236.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC----C-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA----F-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVET 147 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~ 147 (470)
+|++|+||.++.. ..++ .+|++.+++.++++.....+.. + ..+...++++.++++++.+..+++++|++++..
T Consensus 44 ~g~~~i~~~~~~~-~~~~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~ 121 (401)
T 2bwn_A 44 GKQDITVWCGNDY-LGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDA 121 (401)
T ss_dssp CEEEEEECSCSCT-TSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHH
T ss_pred CCCcEEEeeCCCc-ccCC-CCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHH
Confidence 6899999987621 1233 4789999999999875432211 1 234578899999999987766666778889988
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~ 226 (470)
++.++..+. +|+ .|++..++|++. .......+ ..+..++++|+++|++++++.. ++++
T Consensus 122 ~~~~l~~~~-------~gd-~Vl~~~~~~~~~-~~~~~~~g------------~~~~~v~~~d~~~le~~l~~~~~~~~~ 180 (401)
T 2bwn_A 122 TLSTLRVLF-------PGL-IIYSDSLNHASM-IEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPK 180 (401)
T ss_dssp HHHHHHHHS-------TTC-EEEEETTCCHHH-HHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCE
T ss_pred HHHHHhcCC-------CCC-EEEECchhhHHH-HHHHHHcC------------CeEEEEcCCCHHHHHHHHHhhccCCce
Confidence 888653210 354 777777775443 33332222 1245677789999999998543 3789
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCCC----CcceeeccccccCCCc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV----RPDMVILGKALGGGVI 300 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~~----~pdi~s~sK~l~gG~~ 300 (470)
+|++++++||+|.+.| +++|.++|++||+++|+||+|+ | +++.|..+. ..+++ .+.+.+|||+++.
T Consensus 181 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~--- 252 (401)
T 2bwn_A 181 LIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV--- 252 (401)
T ss_dssp EEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---
T ss_pred EEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC---
Confidence 9999999999999997 9999999999999999999999 4 566665542 33333 2334599999983
Q ss_pred ceeEEEecHHHHhhcCcCCc--cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 301 PVSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+.|++++++++++.+..... ..+.+.++++++++.++++.+++ +++.++++++++++.+.|++++ +. ..
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~--- 326 (401)
T 2bwn_A 253 FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALG--MP-II--- 326 (401)
T ss_dssp CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHT--CC-BC---
T ss_pred CCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCC--Cc-cc---
Confidence 22678889988877653211 11223467888888999998765 4678888999999999998862 21 22
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~-------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+.++++.+... .+..++++.|+ ++||.+.|+. .+++|++++..+|++++++++++|+++++ ++
T Consensus 327 ~~~~~~~~~~~~~~---~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~-~~ 400 (401)
T 2bwn_A 327 DHGSHIVPVVIGDP---VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA-RC 400 (401)
T ss_dssp CCSSSCEEEECCCH---HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC----
T ss_pred CCCCCeEEEEeCCh---HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH-hc
Confidence 34566777766431 36778999996 7799987542 25899999988999999999999999887 54
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=267.35 Aligned_cols=329 Identities=13% Similarity=0.119 Sum_probs=231.7
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.++||.++... ++ .+|.+.+++ ++++.....+ .....++++.+++++.+..+ .+++++|+||++|++
T Consensus 41 ~g~~~i~l~~~~~~--~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~ 116 (409)
T 2gb3_A 41 RGVRIHHLNIGQPD--LK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 116 (409)
T ss_dssp TTCEEEECSSCCCC--SC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEeccCCCCC--CC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence 57889999888653 34 578999999 8875432111 11122334455555544333 368999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----C-HHHHHHHHHh
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----D-ITALEKIFKE 220 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~Le~~l~~ 220 (470)
.+++++.. +|+ .|++..++|++........+. . +..++.+ + +++|++++++
T Consensus 117 ~~~~~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~g~-~------------~~~v~~~~~~~~~~~~~l~~~l~~ 173 (409)
T 2gb3_A 117 FSFAVIAN---------PGD-EILVLEPFYANYNAFAKIAGV-K------------LIPVTRRMEEGFAIPQNLESFINE 173 (409)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHHTC-E------------EEEEECCGGGTSCCCTTGGGGCCT
T ss_pred HHHHHhCC---------CCC-EEEEcCCCchhHHHHHHHcCC-E------------EEEeccCCCCCCccHHHHHHhhCc
Confidence 99997743 354 788899999876554332221 1 1223322 1 5677777754
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Cccee--ecccccc-
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMV--ILGKALG- 296 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~- 296 (470)
++++|++++++||+|.++ +.+++++|.++|++||++||+||+|+++.+.|..... ..+. ..|++ ++||.++
T Consensus 174 ---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~ 248 (409)
T 2gb3_A 174 ---RTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSA 248 (409)
T ss_dssp ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTC
T ss_pred ---CCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCC
Confidence 788888777799999998 8899999999999999999999999988776644332 1122 23544 8899998
Q ss_pred CCCcceeEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 297 GGVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 297 gG~~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+|+ |+|++++++ ++++.+.......+ +.++++++++.++|+...+ +.+.++++++++++.+.|++++ +. .+
T Consensus 249 ~G~-r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~- 322 (409)
T 2gb3_A 249 CGA-RVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG--LK-RF- 322 (409)
T ss_dssp GGG-CCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--CC-CB-
T ss_pred ccc-eEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcC--ce-ee-
Confidence 788 999999998 88888765444445 7889999988888853221 4466777778888888887752 11 10
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHc------CceeccC---------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKER------GILAKPT---------HDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~~~~~---------~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
..+..|.+.++.+. . .+..++++.|.++ ||.+.++ ..+++|++++ ++++++++++++|+
T Consensus 323 ~~~~~~~~~~~~~~-~---~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~ 396 (409)
T 2gb3_A 323 TKPSGAFYITAELP-V---EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLM 396 (409)
T ss_dssp CCCSBSSEEEEECS-S---SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHH
T ss_pred eCCCeeEEEEEEeC-C---CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHH
Confidence 11233555555554 2 2678899999987 9998764 2679999976 89999999999999
Q ss_pred HHHhcccC
Q 012138 439 DVLELDLP 446 (470)
Q Consensus 439 ~~l~~~~~ 446 (470)
++++ +++
T Consensus 397 ~~l~-~~~ 403 (409)
T 2gb3_A 397 EGLK-MFC 403 (409)
T ss_dssp HHHH-HHH
T ss_pred HHHH-Hhh
Confidence 9998 764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=266.88 Aligned_cols=339 Identities=12% Similarity=0.091 Sum_probs=234.7
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc--CCCC-CCCcHHHHHHHHhhhh------CCCeEEecCChh
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS--SRAF-YNDKFPVFAERLTSMF------GYDMVLPMNTGA 142 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~-~~~~~~~l~~~l~~~~------~~~~v~~~~sGt 142 (470)
.+|+++|||.++....+ .+|+|.+++.++++..... ...| ......++++.+++++ ..+.+++++|++
T Consensus 66 ~~~~~~i~l~~g~~~~~---~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGDTTEP---LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCCCCCC---CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCCCCCC---CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 46889999999864433 7899999999999864321 1122 1233567777777776 346899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+++..+ ..+.. +|+ .|++..++|++................ ....++..+++++.+.+...+.+.
T Consensus 143 ~al~~~-~~l~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 207 (449)
T 3qgu_A 143 CDIARI-QMMFG---------SKP-TVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFFPDLSKA- 207 (449)
T ss_dssp HHHHHH-HHHHC---------SSS-CEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTCCCGGGC-
T ss_pred HHHHHH-HHHhC---------CCC-EEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCcCChhHc-
Confidence 999988 54443 454 788899999887655444333210000 000113444444221211111211
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccC----CCCcceeecccccc-
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE----EVRPDMVILGKALG- 296 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~----~~~pdi~s~sK~l~- 296 (470)
.++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|++|++.|.. ..+..+ +..+.+.+|||.++
T Consensus 208 ~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 286 (449)
T 3qgu_A 208 KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF 286 (449)
T ss_dssp CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence 2677777666699999999 8999999999999999999999999998776632 122222 23345679999998
Q ss_pred CCCcceeEEEecHHHHhh--------cCcCCccCCCCCCHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLADKEVMLC--------IQPGEHGSTFGGNPLASAVAIASLDVIR---DEKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 297 gG~~~ig~v~~~~~~~~~--------~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+|+ |+|++++++++++. +.......+++.++++++++.++++... .+++.++++++++++.+.|++++
T Consensus 287 ~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 365 (449)
T 3qgu_A 287 TGV-RLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG 365 (449)
T ss_dssp TTC-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccc-eeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 898 99999999887652 2222334455789999999988886521 14577778888888888887752
Q ss_pred hhCCCceEEEecc-ceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC------CCEEEEecCCCCCHHHHHHHHHHH
Q 012138 366 QQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 366 ~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+....+. |.++++.+. . .+..++++.|+++ ||.+.|+. .+++||+ +..++++|++++++|
T Consensus 366 ------~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l 433 (449)
T 3qgu_A 366 ------FSVYGGDDAPYIWVGFP-G---KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRF 433 (449)
T ss_dssp ------CCEEESSSSSEEEEECT-T---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHH
T ss_pred ------CeeeCCCCeeEEEEECC-C---CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHH
Confidence 3334454 666666554 2 3678899888877 99988652 6899999 667999999999999
Q ss_pred HHHHh
Q 012138 438 HDVLE 442 (470)
Q Consensus 438 ~~~l~ 442 (470)
+++++
T Consensus 434 ~~~~~ 438 (449)
T 3qgu_A 434 KEAYG 438 (449)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99998
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=256.66 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=233.1
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~ 152 (470)
+.+|||.++... ++ .+|++++++.++++.... +......++++.++++++ .+++++++||++|++.+++.+
T Consensus 30 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNENP--FG-TPPKAIECLRQNANKAHL----YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCCT--TC-SCHHHHHHHHHHGGGTTS----CCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCCC--CC-CCHHHHHHHHHHHHhhcc----CCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 678999988544 33 789999999998874332 222233788999999887 468999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.. +|+ .|++..++|++........+... . +.+...+.. + |+++|+++++. ++++|+++.
T Consensus 103 ~~---------~gd-~vl~~~~~~~~~~~~~~~~g~~~-~---~v~~~~~~~-~---d~~~l~~~l~~---~~~~v~~~~ 161 (365)
T 3get_A 103 LN---------SKN-AFLQAGVTFAMYEIYAKQCGAKC-Y---KTQSITHNL-D---EFKKLYETHKD---EIKLIFLCL 161 (365)
T ss_dssp CC---------TTC-EEEECSSCCTHHHHHHHHHTCEE-E---ECSSSSCCH-H---HHHHHHHHTTT---TEEEEEEES
T ss_pred hC---------CCC-EEEEeCCChHHHHHHHHHcCCEE-E---EEecCCCCC-C---CHHHHHHHhCC---CCCEEEEcC
Confidence 53 454 78888999876554433322211 1 111101112 3 78999998874 789998766
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc--c-CCccc----cccCCCCcceeecccccc-CCCcceeE
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR--S-GRMLA----SDWEEVRPDMVILGKALG-GGVIPVSA 304 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~--~-G~~~~----~~~~~~~pdi~s~sK~l~-gG~~~ig~ 304 (470)
++||+|.++ +.+.+++|.++| ++|+++|+||+|+++.+ . +.... .+..+....+.|+||.++ +|+ |+|+
T Consensus 162 p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~ 238 (365)
T 3get_A 162 PNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGL-RIGY 238 (365)
T ss_dssp SCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTT-CCEE
T ss_pred CCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcch-heEE
Confidence 699999999 777777777777 57999999999997652 2 22111 122233334559999998 898 9999
Q ss_pred EEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 305 VLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 305 v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
+++++++++.+.... .+++.++++++++.++|+..+. +...++++++.+++.+.|+++ .+...++.|.+++
T Consensus 239 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~~~~~~~~ 310 (365)
T 3get_A 239 GIANANIISAFYKLR--APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH------NIKIIDSYTNFIT 310 (365)
T ss_dssp EEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT------TCEECCCSSSEEE
T ss_pred EEcCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC------CCEECCCCCeEEE
Confidence 999999998886433 3467899999999888874321 445666677777777777664 2444567788877
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.+... +..++.+.|.++||.+.++. .+++|++++ +++++++++++|+++++
T Consensus 311 ~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 311 YFFDEK----NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKILR 365 (365)
T ss_dssp EECSSS----CHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred EECCCC----CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHhC
Confidence 765432 57789999999999998876 689999954 89999999999998864
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=258.12 Aligned_cols=335 Identities=11% Similarity=0.111 Sum_probs=228.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc---cCCCCCCCcHHHHHHHHhhhhC----C-CeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL---SSRAFYNDKFPVFAERLTSMFG----Y-DMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~----~-~~v~~~~sGteA~~ 146 (470)
..+|||..+.... ..+|++.+++.++++.... .......++++.+++++.+.++ . ++|++++||++|++
T Consensus 23 ~~~i~l~~~~~~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGFPDI---SPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCCCCS---CCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCCCCC---CCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 4578888885432 2789999999999875321 1111123445555555554433 3 68999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-------CCeeeecCCCHHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-------PGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~Le~~l~ 219 (470)
.+++.+.. +|+ .|++..++|++........+.. ....++.+.. .....+ |+++|+++++
T Consensus 100 ~~~~~~~~---------~gd-~vl~~~p~~~~~~~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~~~---d~~~l~~~~~ 165 (410)
T 3e2y_A 100 NSIQGLVD---------PGD-EVIIMVPFYDCYEPMVRMAGAV-PVFIPLRSKPTDGMKWTSSDWTF---DPRELESKFS 165 (410)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCE-EEEEECEECCCCSSCCBGGGEEC---CHHHHHTTCC
T ss_pred HHHHHhcC---------CCC-EEEEeCCCchhhHHHHHHcCCE-EEEEeccccccccccccccCCcC---CHHHHHhhcC
Confidence 99998753 454 7888999987765443332221 1111000000 001122 8899998886
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC----CCCcceeecccc
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE----EVRPDMVILGKA 294 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~----~~~pdi~s~sK~ 294 (470)
+ ++++|++++++||+|.++ +++.+++|.++|++||++||+||+|++|.+.|..+ .+... +...++.+|||.
T Consensus 166 ~---~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 241 (410)
T 3e2y_A 166 S---KTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKT 241 (410)
T ss_dssp T---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHH
T ss_pred C---CceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhh
Confidence 5 789998878899999999 88899999999999999999999999988777532 22222 222345589999
Q ss_pred cc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH-------hh--hhHHHHHHHHHHHHHHHHHHH
Q 012138 295 LG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI-------RD--EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 295 l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-------~~--~~~~~~~~~~~~~l~~~L~~l 364 (470)
++ +|+ |+|++++++++++.+.......+++.++++++++.++|+.. .+ +++.++++++++++.+.|+++
T Consensus 242 ~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 320 (410)
T 3e2y_A 242 FSVTGW-KLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV 320 (410)
T ss_dssp SSCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCc-eEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 98 898 99999999999998876666778889999999999888741 11 345556666667777666653
Q ss_pred HhhCCCceEEEe-ccceeEEEEeccCCCc--------hhHHHHHHHHH-HcCceeccCC-----------CCEEEEecCC
Q 012138 365 QQQFPNYVKEVR-GRGLFNAVEFDKTALP--------VSAYDICLKMK-ERGILAKPTH-----------DTIVRLTPPL 423 (470)
Q Consensus 365 ~~~~p~~~~~~~-~~g~~~~~~~~~~~~~--------~~~~~~~~~l~-~~Gv~~~~~~-----------~~~iR~~~~~ 423 (470)
.+.... ..|.++++.+.....+ .+..++++.|+ ++||.+.|+. .+++||+ +
T Consensus 321 ------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~ 392 (410)
T 3e2y_A 321 ------GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--F 392 (410)
T ss_dssp ------TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--C
T ss_pred ------CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--E
Confidence 133333 4455555555331100 12347777665 5699987642 4799999 5
Q ss_pred CCCHHHHHHHHHHHHH
Q 012138 424 SISSNELQEGSKALHD 439 (470)
Q Consensus 424 ~~t~e~i~~~~~~l~~ 439 (470)
..++++|++++++|++
T Consensus 393 ~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 393 IKKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6699999999999875
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=256.26 Aligned_cols=334 Identities=15% Similarity=0.148 Sum_probs=228.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
|+.++||..+... ++ .+|.+.+++.+.++.....+ .....++++++++++.+.++ .++|++|+||++|+..
T Consensus 30 ~~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEPD--FD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSCS--SC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCCC--CC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 4556788877442 22 57899999988886532111 11233455666666655444 3679999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
+++.+.. +|+ .|++..++|++........+. .... .+..+ +...+ |+++|++++++ +++
T Consensus 107 ~~~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~-~~~~---v~~~~~~~~~~---d~~~l~~~l~~---~~~ 166 (385)
T 1b5p_A 107 LFQAILD---------PGD-EVIVLSPYWVSYPEMVRFAGG-VVVE---VETLPEEGFVP---DPERVRRAITP---RTK 166 (385)
T ss_dssp HHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTC-EEEE---EECCGGGTTCC---CHHHHHTTCCT---TEE
T ss_pred HHHHhcC---------CCC-EEEEcCCCchhHHHHHHHcCC-EEEE---eecCcccCCCC---CHHHHHHhcCC---CCE
Confidence 9987743 455 788899998765433322211 1110 01000 00111 78999888865 688
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC--CCCcceeecccccc-CCCccee
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE--EVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~--~~~pdi~s~sK~l~-gG~~~ig 303 (470)
+|++..++||||.++ +.+.+++|.++|++||++||+||+|+.+.+.|....+..+ +....+.+|||.++ +|+ |+|
T Consensus 167 ~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG 244 (385)
T 1b5p_A 167 ALVVNSPNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGW-RIG 244 (385)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGG-CCE
T ss_pred EEEEeCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCccc-ceE
Confidence 777544599999999 8999999999999999999999999987655532222222 11122348999998 798 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecc
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV---IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 378 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~---~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~ 378 (470)
++++++++++.+.......+++.+.+++.++.++|+. ..+ ++.+++++++++++.+.|++++ +....+.
T Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~ 318 (385)
T 1b5p_A 245 YACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG------LKAVRPS 318 (385)
T ss_dssp EEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CCBCCCS
T ss_pred EEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCC------CeecCCC
Confidence 9999999988876554455677888888888888863 222 4466777778888888887762 1122344
Q ss_pred ceeEEE-EeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 379 GLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.++.| .+... +.+..++++.|.++||.+.++. ++++||++ ..+++++++++++|.++++
T Consensus 319 ~~~~~~~~~~~~--~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~--~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 319 GAFYVLMDTSPI--APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARVLG 383 (385)
T ss_dssp BTTEEEEECTTT--CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGGC-
T ss_pred eeEEEEEecCCC--CCCHHHHHHHHHHCCeEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHh
Confidence 544444 44311 1367889999999999998763 57999995 4899999999999987765
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=266.64 Aligned_cols=340 Identities=10% Similarity=0.058 Sum_probs=235.0
Q ss_pred CeEEeccCCcccccCCCCCHHH--HHHHHHHHHHccccCCCCCC-CcHHHHHHHHhhhh-----C--CCe---EEecCCh
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKI--MKALQEQAEKLTLSSRAFYN-DKFPVFAERLTSMF-----G--YDM---VLPMNTG 141 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v--~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-----~--~~~---v~~~~sG 141 (470)
+.++||..+... ++|. +|.+ .+++.++++... ...|.. ....++++.+++++ + .++ +++|+||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDE--IFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGG--TSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 468999988652 4553 5666 777666654311 111211 12456666666655 4 367 9999999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
++|++.+++.+.. +|+ .|++..++|++....... .+. .... .+..++...+ |+++|++++++
T Consensus 123 ~~al~~~~~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~~g~-~~~~---~~~~~~~~~~---d~~~l~~~l~~ 185 (430)
T 2x5f_A 123 THGLSLVGDLFVN---------QDD-TILLPEHNWGNYKLVFNTRNGA-NLQT---YPIFDKDGHY---TTDSLVEALQS 185 (430)
T ss_dssp HHHHHHHHHHHCC---------TTC-EEEEESSCCTHHHHHHTTTTCC-EEEE---ECCBCTTSCB---CSHHHHHHHHH
T ss_pred hHHHHHHHHHHhC---------CCC-EEEEcCCcCccHHHHHHHhcCC-eEEE---EeccCccCCc---CHHHHHHHHHh
Confidence 9999999997753 454 788899999887554433 222 1111 1111100112 78999999987
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-----cCcEEEEeccccCCcccCCcc-cc--ccCCCCcc-----
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-----YNILMIADEIQSGLARSGRML-AS--DWEEVRPD----- 287 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-----~gillI~Dev~~g~g~~G~~~-~~--~~~~~~pd----- 287 (470)
++.+++++++..++||+|.++ +.+++++|.++|++ ||+++|+||+|+++.+.|..+ .. ...+..++
T Consensus 186 ~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 264 (430)
T 2x5f_A 186 YNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPI 264 (430)
T ss_dssp CCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEE
T ss_pred cCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEE
Confidence 544677766444499999998 89999999999999 999999999999887766421 11 11122333
Q ss_pred -eeecccccc-CCCcceeEEEe---cHHHHhhcCcCCcc----CCCCCCHHHHHHHHHHHH-H---Hhh-hhHHHHHHHH
Q 012138 288 -MVILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STFGGNPLASAVAIASLD-V---IRD-EKLAERSAHL 353 (470)
Q Consensus 288 -i~s~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~~~~----~t~~~~~~~~aaa~a~l~-~---~~~-~~~~~~~~~~ 353 (470)
+.++||.++ +|+ |+|++++ ++++++.+...... .+++.++++++++.++|+ . .+. +.+.++++++
T Consensus 265 ~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 343 (430)
T 2x5f_A 265 RLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKER 343 (430)
T ss_dssp EEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 458999998 898 9999999 99998887654433 678899999999998887 3 222 2356666666
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccce-eEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCEEEEecCCCCCHHHHH
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~~~~~~t~e~i~ 431 (470)
++++.+.|++..... .+....+.+. ++++.+. . .+..++++.|.+ +||.+.|+..+++||+++. .++++++
T Consensus 344 ~~~l~~~L~~~~~~~--g~~~~~~~~g~~~~~~~~-~---~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~ 416 (430)
T 2x5f_A 344 YEVTKEVVYADQYHS--HWQAYDFNSGYFMAIKVH-D---VDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIP 416 (430)
T ss_dssp HHHHHHHHTCGGGTT--TEEECCCCBSSEEEEEES-S---SCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHH
T ss_pred HHHHHHHHHhhCCCC--CceeeCCCceEEEEeCCC-C---CCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHH
Confidence 777766665221111 2444455554 4666665 2 267789999998 8999999877899999875 5999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
+++++|+++++ ++
T Consensus 417 ~~~~~l~~~l~-~~ 429 (430)
T 2x5f_A 417 HVFDSIAKAID-DL 429 (430)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHH-hc
Confidence 99999999998 65
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=251.26 Aligned_cols=326 Identities=13% Similarity=0.073 Sum_probs=222.4
Q ss_pred EeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecC
Q 012138 62 SQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMN 139 (470)
Q Consensus 62 ~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~ 139 (470)
.+++|..+++.+|+.+|||.++....+ .+|++.+++.+++..... +......+++++++++++. +++++|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~~~~---~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVWTDG---DKDHLEKHLVENLNCIRH----YPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSCCCS---CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCCCCC---CCHHHHHHHHHhHhHHhc----CCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 467899999999999999999864433 789999999888743322 2223337899999998875 5899999
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-CCHHHHHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIF 218 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~Le~~l 218 (470)
||++|+..+++++. | +.|++..++|++........+.. +..++. ++.+.+..
T Consensus 75 g~~~al~~~~~~l~-----------g-d~Vi~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~-- 127 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR-----------G-SRSLIAIPSFAEYEDACRMYEHE-------------VCFYPSNEDIGEADF-- 127 (350)
T ss_dssp HHHHHHHHHHHHTT-----------T-CEEEEEESCCHHHHHHHHHTTCE-------------EEEEETTSCGGGSCC--
T ss_pred CHHHHHHHHHHHHC-----------C-CEEEEeCCCcHHHHHHHHHcCCe-------------EEEEecCCccccCcc--
Confidence 99999999998762 2 37888999998765443332221 234443 22222211
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc--ccccCCCCcceeecccccc
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML--ASDWEEVRPDMVILGKALG 296 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~--~~~~~~~~pdi~s~sK~l~ 296 (470)
+++++|+++.++||+|.++ +.+.+++|.++|+++ +||+||+|+++++.+... ..+..+....+.||||.++
T Consensus 128 ----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 128 ----SNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG 200 (350)
T ss_dssp ----TTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS
T ss_pred ----CCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc
Confidence 2677777666699999999 666666666666654 999999999887766442 1222232334558999998
Q ss_pred -CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 297 -GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+|+ |+|++++++++++.+.... .+++.++++++++.++|+.... +.+.+.. ++++++.+.|+++ | .+.
T Consensus 201 ~~G~-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~~----~-~~~ 271 (350)
T 3fkd_A 201 IPGL-RIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNRL----D-GVE 271 (350)
T ss_dssp CGGG-CCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHHS----T-TEE
T ss_pred Ccch-heEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhcC----C-CcE
Confidence 898 9999999999999887543 4677899999999888875441 3344433 6667777776653 2 455
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
..++.|.++++.++.. ++.++++.|.+ +||.+.++. .+++||++ .+++++++++++|+++++ +-
T Consensus 272 ~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~---~~~~~~~~l~~al~~~~~-~~ 342 (350)
T 3fkd_A 272 VHPSGTTFFLLRLKKG----TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITT---QRPAQNQLFIKALETFLE-KY 342 (350)
T ss_dssp ECCCSSSEEEEEESSS----CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHHT-C-
T ss_pred ECCCCCcEEEEECCCC----CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEc---CCHHHHHHHHHHHHHHHH-Hh
Confidence 5667788887766542 57789999999 899998763 68999994 388999999999999987 53
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=258.94 Aligned_cols=338 Identities=12% Similarity=0.079 Sum_probs=226.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHH------------HHccccCC-CCCCCcHHHHHHHHhhhhC------CCeEE
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQA------------EKLTLSSR-AFYNDKFPVFAERLTSMFG------YDMVL 136 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~~~v~ 136 (470)
.++||.++.. +++ +|.+.+++.++. .....++. ....++++.+++++.+.+| .++++
T Consensus 37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 4678876643 333 467888777432 11111111 1122334444554443322 46899
Q ss_pred ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHH
Q 012138 137 PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALE 215 (470)
Q Consensus 137 ~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le 215 (470)
+++|++++++.+++++.. +|+ .|++..++|++.........+...... +... +...+ |+++|+
T Consensus 113 ~~~G~~~ai~~~~~~~~~---------~gd-~Vl~~~p~y~~~~~~~~~~~g~~~~~v---~~~~~~~~~~---d~~~l~ 176 (428)
T 1iay_A 113 MAGGATGANETIIFCLAD---------PGD-AFLVPSPYYPAFNRDLRWRTGVQLIPI---HCESSNNFKI---TSKAVK 176 (428)
T ss_dssp EEEHHHHHHHHHHHHHCC---------TTC-EEEEESSCCTTHHHHTTTTTCCEEEEE---CCCTTTTTCC---CHHHHH
T ss_pred EccChHHHHHHHHHHhCC---------CCC-eEEEccCCCcchHHHHHHhcCCEEEEe---ecCCccCCcC---CHHHHH
Confidence 999999999999998754 454 888899999876543322222211111 1100 00111 799999
Q ss_pred HHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c---cccC----CC
Q 012138 216 KIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A---SDWE----EV 284 (470)
Q Consensus 216 ~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~---~~~~----~~ 284 (470)
+++++. +.++++|++..++||+|.++ +.+++++|.++|++||++||+||+|+++++.+..+ . .... ++
T Consensus 177 ~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (428)
T 1iay_A 177 EAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC 255 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS
T ss_pred HHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccC
Confidence 998752 23688777555599999999 89999999999999999999999999876655322 1 1111 22
Q ss_pred Ccc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh---h--hhHHHHHHHH
Q 012138 285 RPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---D--EKLAERSAHL 353 (470)
Q Consensus 285 ~pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~--~~~~~~~~~~ 353 (470)
.+| +.|+||.++ +|+ |+|++++ ++++++.+... ..+++.++++++++.++|+... + +++.++++++
T Consensus 256 ~~d~viv~~s~sK~~g~~Gl-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 256 NKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp CTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCCCCc-eEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 356 569999998 898 9999998 68888877532 3346788999998888876432 1 4466677777
Q ss_pred HHHHHHHHHHHHhhCCCceEEEec-cceeEEEEeccCCC---chhHHHHHHHHHHc-CceeccCC------CCEEEEecC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTAL---PVSAYDICLKMKER-GILAKPTH------DTIVRLTPP 422 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~-~g~~~~~~~~~~~~---~~~~~~~~~~l~~~-Gv~~~~~~------~~~iR~~~~ 422 (470)
++++.+.|++++ +...++ .|.|+++.+..... .....++++.|+++ ||.+.++. ++++|++++
T Consensus 333 ~~~l~~~L~~~g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~ 406 (428)
T 1iay_A 333 HKHFTNGLEVVG------IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA 406 (428)
T ss_dssp HHHHHHHHHHTT------CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS
T ss_pred HHHHHHHHHhcC------CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe
Confidence 888888877652 222344 56677776643110 01456789999987 99998753 579999987
Q ss_pred CCCCHHHHHHHHHHHHHHHhccc
Q 012138 423 LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 423 ~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.++++++++++++|+++++ +.
T Consensus 407 -~~~~e~i~~~~~~l~~~l~-~~ 427 (428)
T 1iay_A 407 -NMDDGTVDIALARIRRFVG-VE 427 (428)
T ss_dssp -SSCHHHHHHHHHHHHHHHH-TT
T ss_pred -cCCHHHHHHHHHHHHHHHh-cc
Confidence 5899999999999999987 53
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=257.96 Aligned_cols=335 Identities=12% Similarity=0.042 Sum_probs=218.9
Q ss_pred EEeCCCCeEEeccCCcccccCC--CCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh--------CCCeEEe
Q 012138 69 IWDPEGNKYLDFLSAYSAVNQG--HCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF--------GYDMVLP 137 (470)
Q Consensus 69 ~~d~~G~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~--------~~~~v~~ 137 (470)
+.+..|+.+|||.+|....+.+ +.+|.+.+++.++++.... ..| ......++++.+++++ ..++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT--KNYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc--cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 3333467899999997544555 5679999999988865311 112 2223455555555554 2567888
Q ss_pred --cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---C---
Q 012138 138 --MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---G--- 209 (470)
Q Consensus 138 --~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 209 (470)
|+||++|++.+++++..+. +|+ .|++..++||+........+.. ...++. +
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~-------~gd-~Vl~~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~ 156 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNT-------SVK-RVWVSNPSWPNHKSVFNSAGLE-------------VREYAYYDAENHT 156 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHS-------CCC-EEEEEESCCTHHHHHHHHTTCE-------------EEEEECEETTTTE
T ss_pred EecccchhhHHHHHHHHHHhC-------CCC-EEEEcCCCchhHHHHHHHcCCc-------------eEEEecccCCCCC
Confidence 9999999999998775321 344 7888999999876554433321 122222 1
Q ss_pred -CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--CccccccCCCCc
Q 012138 210 -DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLASDWEEVRP 286 (470)
Q Consensus 210 -d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~~~~~~~p 286 (470)
|+++|++++++...+++++++..++||||.++ +.+++++|.++|++||++||+||+|++|++.| ..+.+..+...+
T Consensus 157 ~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T 2q7w_A 157 LDFDALINSLNEAQAGDVVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH 235 (396)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcC
Confidence 89999999976433467777666699999998 89999999999999999999999999887654 222222121111
Q ss_pred c----eeecccccc-CCCcceeEEEe---cH----HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH------hh--hhH
Q 012138 287 D----MVILGKALG-GGVIPVSAVLA---DK----EVMLCIQPGEHGSTFGGNPLASAVAIASLDVI------RD--EKL 346 (470)
Q Consensus 287 d----i~s~sK~l~-gG~~~ig~v~~---~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~ 346 (470)
| +.|+||.++ +|+ |+|++++ ++ ++++.+.........+.++++++++.++|+.. .+ +.+
T Consensus 236 ~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~ 314 (396)
T 2q7w_A 236 KELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp SCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred CcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 2 458999999 898 9999997 55 45544432222222335888998888887643 11 345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCC
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSIS 426 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t 426 (470)
.++++++++++.+.|+++... ..+....+.+.++.| +.. ....+.+.|.++||.+.++ +||+++. .+
T Consensus 315 ~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gv~v~~~----~Ris~~~-~~ 381 (396)
T 2q7w_A 315 RQRIQRMRQLFVNTLQEKGAN--RDFSFIIKQNGMFSF-SGL-----TKEQVLRLREEFGVYAVAS----GRVNVAG-MT 381 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCC--SCCTHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCTT----CEEEGGG-CC
T ss_pred HHHHHHHHHHHHHHHHhcCCC--CCcceecCCCceEEE-ecC-----CHHHHHHHHHhcCeeecCC----ceEEEee-cC
Confidence 556677777777777765310 012222345555554 222 2345666777889999875 6999874 38
Q ss_pred HHHHHHHHHHHHHHH
Q 012138 427 SNELQEGSKALHDVL 441 (470)
Q Consensus 427 ~e~i~~~~~~l~~~l 441 (470)
++++++++++|++++
T Consensus 382 ~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 382 PDNMAPLCEAIVAVL 396 (396)
T ss_dssp TTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998864
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=250.94 Aligned_cols=318 Identities=15% Similarity=0.149 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHHHHccccCCCC-------CCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAF-------YNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
+.+|++.+++.++++.....+..+ ..+...++++.++++++. +.+++++||++|++.+++.++++. .
T Consensus 34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~-~-- 110 (406)
T 1kmj_A 34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN-V-- 110 (406)
T ss_dssp CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-C--
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc-C--
Confidence 578999999999998753211111 134467899999999886 679999999999999999874210 0
Q ss_pred cCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA 237 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~ 237 (470)
.+|+ .|++..++||+..... ....+..... .+...+ ..+ |+++|++++++ ++++|++++++||+
T Consensus 111 --~~gd-~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~-~~~---d~~~l~~~l~~---~~~~v~~~~~~npt 177 (406)
T 1kmj_A 111 --RAGD-NIIISQMEHHANIVPWQMLCARVGAELRV---IPLNPD-GTL---QLETLPTLFDE---KTRLLAITHVSNVL 177 (406)
T ss_dssp --CTTC-EEEEETTCCGGGTHHHHHHHHHHTCEEEE---ECBCTT-SCB---CGGGHHHHCCT---TEEEEEEESBCTTT
T ss_pred --CCCC-EEEEecccchHHHHHHHHHHHhCCCEEEE---EecCCC-CCc---CHHHHHHHhcc---CCeEEEEeCCCccc
Confidence 1344 8888999998765332 1111211110 111111 111 78999998875 78999999999999
Q ss_pred ccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhc
Q 012138 238 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCI 315 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~ 315 (470)
|.+.| +++|.++|++||++||+||+|+.. .. .+..... .+|++ +++|.++ +. .+|++++++++++.+
T Consensus 178 G~~~~----l~~i~~l~~~~~~~li~D~~~~~g-~~--~~~~~~~--~~d~~~~s~~K~~g-~~-G~G~~~~~~~~~~~~ 246 (406)
T 1kmj_A 178 GTENP----LAEMITLAHQHGAKVLVDGAQAVM-HH--PVDVQAL--DCDFYVFSGHKLYG-PT-GIGILYVKEALLQEM 246 (406)
T ss_dssp CCBCC----HHHHHHHHHHTTCEEEEECTTTTT-TS--CCCHHHH--TCSEEEEEGGGTTS-CT-TCEEEEECHHHHHHC
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEEchhhcC-CC--CCccccc--CCCEEEEEchhccC-CC-CcEEEEEeHHHHhhc
Confidence 99997 999999999999999999999832 22 1112222 35664 7999884 32 479999999999888
Q ss_pred CcCCccC---------------------CCCCCHHHHHHHH-HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 012138 316 QPGEHGS---------------------TFGGNPLASAVAI-ASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPN 370 (470)
Q Consensus 316 ~~~~~~~---------------------t~~~~~~~~aaa~-a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~ 370 (470)
.+...+. ..+.+++.++++. ++++.+.+ +.+.++.+++++++.+.|+++ |
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~- 321 (406)
T 1kmj_A 247 PPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV----P- 321 (406)
T ss_dssp CCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS----T-
T ss_pred CCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC----C-
Confidence 7544321 1233445555444 77887754 356677777788887777653 2
Q ss_pred ceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC------------CCEEEEecCCCCCHHHHHHHHHH
Q 012138 371 YVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 371 ~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
.+....+ .|.++.|.+.. .+..++.+.|.++||.+.++. ++++||+++..+|++++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~ 397 (406)
T 1kmj_A 322 DLTLYGPQNRLGVIAFNLGK----HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTG 397 (406)
T ss_dssp TEEEESCTTCCSEEEEEETT----CCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHH
T ss_pred CeEEecCCCcCCEEEEEECC----CCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHH
Confidence 3444455 78888887642 256788999999999987653 58999999998999999999999
Q ss_pred HHHHHhccc
Q 012138 437 LHDVLELDL 445 (470)
Q Consensus 437 l~~~l~~~~ 445 (470)
|+++++ .+
T Consensus 398 l~~~~~-~l 405 (406)
T 1kmj_A 398 LQRIHR-LL 405 (406)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHH-hh
Confidence 999987 54
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=255.86 Aligned_cols=341 Identities=11% Similarity=0.075 Sum_probs=231.3
Q ss_pred CCeEEeccCCccccc--CCCCCHHHHHHHHHHHHH--ccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHH
Q 012138 74 GNKYLDFLSAYSAVN--QGHCHPKIMKALQEQAEK--LTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVE 146 (470)
Q Consensus 74 G~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~ 146 (470)
|+.++||..|..... .-..++.+.+++.+.... ..+.+.....++++++++++....+.+ ++++|+||++|+.
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~ 116 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIH 116 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHHH
Confidence 445677777643111 112567888877664432 122222223445666666666656677 9999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc--CCC
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES--GDQ 224 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~--~~~ 224 (470)
.+++.+.. +|+ .|++..++|++........+..... .+..++...+ |+++|++++++. ...
T Consensus 117 ~~~~~l~~---------~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~---d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 117 HLIHNYTE---------PGD-EVLTADWYWGAYRVICSDTGRTLVT----YSLFDEHNNF---NHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHHSC---------TTC-EEEEESSCCTHHHHHHHHTTCEEEE----ECSBCTTSSB---CHHHHHHHHHHHHHHCS
T ss_pred HHHHHhcC---------CCC-EEEECCCCchhHHHHHHHcCCEEEE----EeeeCCCCCc---CHHHHHHHHHHhhccCC
Confidence 99997754 455 7888999987765544333322111 1110111122 899999999752 013
Q ss_pred eEEEEEccc-cCCCccccCChhhHHHHHHHHH------hcCcEEEEeccccCCcccCCc---cccccCCCCcc---ee--
Q 012138 225 IAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS------KYNILMIADEIQSGLARSGRM---LASDWEEVRPD---MV-- 289 (470)
Q Consensus 225 ~~~vi~epi-~n~~G~~~~~~~~l~~l~~l~~------~~gillI~Dev~~g~g~~G~~---~~~~~~~~~pd---i~-- 289 (470)
.++++++.+ +||+|.++ +.+.+++|+++|+ +||++||+||+|.+|++.|.. +.....++.++ ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp EEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 346777755 99999999 8888999999999 899999999999998876642 22233445555 22
Q ss_pred ecccccc-CCCcceeEEEe---cHHHHhhcCcCCc----cCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHH
Q 012138 290 ILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEH----GSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHL 353 (470)
Q Consensus 290 s~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~ 353 (470)
||||.++ +|+ |+|++++ ++++++.+..... +...+.+.++++++.++++.. .+ ..++++++++
T Consensus 259 S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
T 3rq1_A 259 SLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDR 337 (418)
T ss_dssp ESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998 798 9999998 8999888764321 122347888888887777432 11 2455677777
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHH
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~ 433 (470)
++++.+.|++++ +....+.|.++.| ++.. +..++++.|.++||.+.|+ .+++||++. .+++++++++
T Consensus 338 ~~~l~~~L~~~g------~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~ 404 (418)
T 3rq1_A 338 ADIFKQEAAQVG------LPMLPYRGGFFIT-IPTD----SANAICEELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGL 404 (418)
T ss_dssp HHHHHHHHHHHT------CCCCCCCSSSEEE-EECT----THHHHHHHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTH
T ss_pred HHHHHHHHHhcC------CCCCCCCceEEEE-cCCC----CHHHHHHHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHH
Confidence 888888887762 2223456666555 3222 5678999999999999987 578999954 4699999999
Q ss_pred HHHHHHHHhcccCC
Q 012138 434 SKALHDVLELDLPK 447 (470)
Q Consensus 434 ~~~l~~~l~~~~~~ 447 (470)
+++|+++++ ++.+
T Consensus 405 ~~~l~~~l~-~~~~ 417 (418)
T 3rq1_A 405 AEKIYNAMK-SLGK 417 (418)
T ss_dssp HHHHHHHHH-HTTC
T ss_pred HHHHHHHHH-HHhc
Confidence 999999998 7654
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=255.15 Aligned_cols=340 Identities=11% Similarity=0.094 Sum_probs=226.9
Q ss_pred CCeEEeccCCcccccCCC--CCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh-C-------CCeEEe--cCC
Q 012138 74 GNKYLDFLSAYSAVNQGH--CHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF-G-------YDMVLP--MNT 140 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~-------~~~v~~--~~s 140 (470)
|+.++||..+....+.++ .+|.+.+++.++++..... ..| ......++++.+++++ + .++|++ |+|
T Consensus 29 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 29 DPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc-cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 566889988864333433 4589999998887321111 112 2223455666666555 2 378999 999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCCC----cEEEEEccCccccccchhcccCC-cccccCCCCCC-CCeeeecCCCHHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSIDE----AIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLL-PGHLKVDFGDITAL 214 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g~----~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~~L 214 (470)
|++|++.+++++..+. +|+ +.|++..++||+........+.. ... . +.. ++...+ |+++|
T Consensus 108 g~~a~~~~~~~~~~~~-------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~-~---~~~~~~~~~~---d~~~l 173 (412)
T 1ajs_A 108 GTGALRIGAEFLARWY-------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS-Y---RYWDTEKRGL---DLQGF 173 (412)
T ss_dssp HHHHHHHHHHHHHHHS-------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEE-E---ECEETTTTEE---CHHHH
T ss_pred cHHHHHHHHHHHHHhC-------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEE-E---eeecCCCCcc---CHHHH
Confidence 9999999987554321 341 47888999998876554443322 111 0 000 011122 89999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC---CccccccCCCCcc----
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG---RMLASDWEEVRPD---- 287 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G---~~~~~~~~~~~pd---- 287 (470)
++++++++.+++++++..++||+|.++ +.+++++|.++|++||++||+||+|++|++.| ..+.+..+...+|
T Consensus 174 ~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (412)
T 1ajs_A 174 LSDLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFC 252 (412)
T ss_dssp HHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEE
Confidence 999987544677776566699999998 89999999999999999999999999998775 3333332211223
Q ss_pred eeeccccccC-CCcceeEEEe---cHHH----HhhcCcCCccCCCC-CCHHHHHHHHHHHHHHh--------hhhHHHHH
Q 012138 288 MVILGKALGG-GVIPVSAVLA---DKEV----MLCIQPGEHGSTFG-GNPLASAVAIASLDVIR--------DEKLAERS 350 (470)
Q Consensus 288 i~s~sK~l~g-G~~~ig~v~~---~~~~----~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~--------~~~~~~~~ 350 (470)
+.+|||.+++ |+ |+|++++ ++++ ++.+... +..+++ .++++++++.++|+... .+++.+++
T Consensus 253 ~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (412)
T 1ajs_A 253 AQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 5599999996 98 9999999 8874 3333321 334555 58899999888887542 15577778
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHH
Q 012138 351 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 351 ~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i 430 (470)
+++++++.+.|+++.. |..+....+.+.++.| +.. +...+...|.++||++.++ +|++++. .+++++
T Consensus 331 ~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gv~v~~~----~Ris~~~-~~~~~i 397 (412)
T 1ajs_A 331 LSMRSELRARLEALKT--PGTWNHITDQIGMFSF-TGL-----NPKQVEYLINQKHIYLLPS----GRINMCG-LTTKNL 397 (412)
T ss_dssp HHHHHHHHHHHHHTTC--SSCCHHHHHCCSSEEE-CCC-----CHHHHHHHHHTTCEECCTT----SEEEGGG-CCTTTH
T ss_pred HHHHHHHHHHHHhhCC--CCCeeEEcCCCceEEE-eCC-----CHHHHHHHHHhCCEEecCC----cEEEeee-CCHHHH
Confidence 8888888888877531 0012222455555555 222 2344555566789999875 5999763 589999
Q ss_pred HHHHHHHHHHHhccc
Q 012138 431 QEGSKALHDVLELDL 445 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~ 445 (470)
++++++|+++++ ++
T Consensus 398 ~~~~~~l~~~l~-~~ 411 (412)
T 1ajs_A 398 DYVATSIHEAVT-KI 411 (412)
T ss_dssp HHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHH-hc
Confidence 999999999998 64
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=251.53 Aligned_cols=301 Identities=12% Similarity=0.098 Sum_probs=213.7
Q ss_pred CCCCcHHHHHHHHhhhhCC-----------CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc
Q 012138 114 FYNDKFPVFAERLTSMFGY-----------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA 182 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~-----------~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~ 182 (470)
.+.++++++++++.+.+|. ++|++|+|+++|+..+++++.. +|+ .|++..++|++....
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~gd-~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN---------PGD-NVLLDEPAYSGTLQS 148 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC---------CCC-EEEEeCCCcHHHHHH
Confidence 3456677788887776652 4799999999999999998754 454 888999999876544
Q ss_pred hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---------CCeEEEEEcc-ccCCCccccCChhhHHHHHH
Q 012138 183 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---------DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---------~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~ 252 (470)
....+. ..... +...+ .+ |+++|+++++++. .++++|+++| ++||||.++ +.+++++|.+
T Consensus 149 ~~~~g~-~~~~v---~~~~~--~~---d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~ 218 (425)
T 2r2n_A 149 LHPLGC-NIINV---ASDES--GI---VPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIYE 218 (425)
T ss_dssp HGGGTC-EEEEE---CEETT--EE---CHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHHH
T ss_pred HHHcCC-EEEEe---CcCCC--CC---CHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHHH
Confidence 332221 11100 11010 12 8999999997421 3578887754 799999999 8999999999
Q ss_pred HHHhcCcEEEEeccccCCcccCCc----cccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCH
Q 012138 253 LCSKYNILMIADEIQSGLARSGRM----LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 328 (470)
Q Consensus 253 l~~~~gillI~Dev~~g~g~~G~~----~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~ 328 (470)
+|++||++||+||+|+++.+.|.. ..++..+....+.+|||.+++|+ |+||+++++++++.+.......+++.++
T Consensus 219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~Gl-RiG~~~~~~~l~~~l~~~~~~~~~~~~~ 297 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGL-RIGFLTGPKPLIERVILHIQVSTLHPST 297 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTT-CCEEEEEEHHHHHHHHHHHHTTTCSSCH
T ss_pred HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCcc-ceEEEecCHHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999987666542 22222233345669999999998 9999999999998887655566788999
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHH-HH
Q 012138 329 LASAVAIASLDVIRD-------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYD-IC 399 (470)
Q Consensus 329 ~~~aaa~a~l~~~~~-------~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~-~~ 399 (470)
++++++.++|+.+.+ +.++++++++++++.+.|++. +|+..... +..|.++++.+.... +..+ +.
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~p~~g~~~~~~~~~~~---~~~~~~~ 371 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW---LTGLAEWHVPAAGMFLWIKVKGIN---DVKELIE 371 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSEEECCCSBSSEEEEEETTCS---CCHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEeCCCceEEEEEEeCCCC---CHHHHHH
Confidence 999999988886432 223444455555555555542 33222222 345666667665422 3344 57
Q ss_pred HHHHHcCceeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 400 LKMKERGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 400 ~~l~~~Gv~~~~~~---------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.|.++||.+.|+. .+++||+++. .+++++++++++|.++++
T Consensus 372 ~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 372 EKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIK 422 (425)
T ss_dssp THHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 88889999998652 4799999763 699999999999999987
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=250.35 Aligned_cols=319 Identities=15% Similarity=0.158 Sum_probs=231.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc---c----cCCCCCCCcHHHHHHH-HhhhhCCCeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT---L----SSRAFYNDKFPVFAER-LTSMFGYDMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~----~~~~~~~~~~~~l~~~-l~~~~~~~~v~~~~sGteA~~ 146 (470)
-.|+|+.. +.++.+|++.+++.+++.... + .......+...+++++ ++++++.+.+++++||++|++
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKF 83 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence 34566532 245578999999999886542 1 1112345678899999 999998779999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeec--CC-----CHHHHHHHHH
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--FG-----DITALEKIFK 219 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----d~~~Le~~l~ 219 (470)
.+++.+.. +|+ .|++..++|++...... ..+.. +..++ ++ |+++|+++++
T Consensus 84 ~~~~~~~~---------~gd-~vl~~~~~~~~~~~~~~-~~g~~------------~~~v~~~~~~~~~~d~~~l~~~l~ 140 (371)
T 2e7j_A 84 AVMHSLAK---------KDA-WVVMDENCHYSSYVAAE-RAGLN------------IALVPKTDYPDYAITPENFAQTIE 140 (371)
T ss_dssp HHHHHHCC---------TTC-EEEEETTCCHHHHHHHH-HTTCE------------EEEECCCCTTTCCCCHHHHHHHHH
T ss_pred HHHHHHhC---------CCC-EEEEccCcchHHHHHHH-HcCCe------------EEEeecccCCCCCcCHHHHHHHHH
Confidence 99998743 344 88899999887655432 22211 12233 22 8999999998
Q ss_pred hcC--CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccc
Q 012138 220 ESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKAL 295 (470)
Q Consensus 220 ~~~--~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l 295 (470)
++. +++++|++++++||+|.+.| +++|.++|++||++||+||+|+.+. .+ +....++ +|++ +++|++
T Consensus 141 ~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~-~~--~~~~~~~--~di~~~s~sK~~ 211 (371)
T 2e7j_A 141 ETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGR-MP--VSLKEIG--ADFIVGSGHKSM 211 (371)
T ss_dssp HHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTT-BC--CCHHHHT--CSEEEEEHHHHS
T ss_pred hhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCC-CC--CChhhcC--CCEEEecCCcCC
Confidence 432 37889998888999999997 8999999999999999999998532 21 1222233 4554 779999
Q ss_pred cCCCcceeEEEecHHHHhh-cCcCCc--cC-----CCCCCHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHH
Q 012138 296 GGGVIPVSAVLADKEVMLC-IQPGEH--GS-----TFGGNPLASAVAIASLDVIRDEKLAERS--AHLGEELRQHLFKIQ 365 (470)
Q Consensus 296 ~gG~~~ig~v~~~~~~~~~-~~~~~~--~~-----t~~~~~~~~aaa~a~l~~~~~~~~~~~~--~~~~~~l~~~L~~l~ 365 (470)
++|. ++|++++++++++. +..... .. +++.++.+++++.++++.+.+ .+.+++ +++++++.+.|+++
T Consensus 212 ~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~- 288 (371)
T 2e7j_A 212 AASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL- 288 (371)
T ss_dssp SCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT-
T ss_pred CCCC-CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc-
Confidence 9887 99999999998887 765433 22 456788888888888887765 667777 88888898888775
Q ss_pred hhCCCceEEEec---cceeEEEEeccCCCchhHHHHHHHHHHcCceecc--------C-CCCEEE-EecCCC-CCHHHHH
Q 012138 366 QQFPNYVKEVRG---RGLFNAVEFDKTALPVSAYDICLKMKERGILAKP--------T-HDTIVR-LTPPLS-ISSNELQ 431 (470)
Q Consensus 366 ~~~p~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--------~-~~~~iR-~~~~~~-~t~e~i~ 431 (470)
. +....+ .+.++++.+. +..++.+.|.++||.+.| + ..+++| ++++.. +++++++
T Consensus 289 -~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~ 357 (371)
T 2e7j_A 289 -G----IKQLGDNPHNHDLMFFHAE------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVD 357 (371)
T ss_dssp -T----CEEESSSSCCSSEEEEECH------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHH
T ss_pred -C----cEEecCCCccCceEEEECC------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHH
Confidence 1 222222 4677777653 466789999988999876 1 157899 998877 8999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
+++++|+++++ ++
T Consensus 358 ~~~~~l~~~~~-~~ 370 (371)
T 2e7j_A 358 YVLNAFKEIIE-KY 370 (371)
T ss_dssp HHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHH-hc
Confidence 99999999987 64
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=250.93 Aligned_cols=340 Identities=12% Similarity=0.103 Sum_probs=224.7
Q ss_pred CeEEeccCCcccc-cCCCCCHHHHHHHHHHHHHccccCCCCC-CCcHHHHHHHHhhhhC--------------CCeEEec
Q 012138 75 NKYLDFLSAYSAV-NQGHCHPKIMKALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFG--------------YDMVLPM 138 (470)
Q Consensus 75 ~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~--------------~~~v~~~ 138 (470)
+.++||..+.+.. +....+|++.+++.++++..... .|. .....++++.++++++ .++|+++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECN--GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSS--SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccC--CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEe
Confidence 4578998875432 23457899999999998753211 111 1123444444444433 5689999
Q ss_pred CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHH
Q 012138 139 NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKI 217 (470)
Q Consensus 139 ~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~ 217 (470)
+||++|++.+++++.. +|+ .|++..++||+........+.. ... .+..++ ...+ |+++|+++
T Consensus 111 ~g~~~al~~~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~~---d~~~l~~~ 173 (416)
T 1bw0_A 111 SGGSHGILMAITAICD---------AGD-YALVPQPGFPHYETVCKAYGIG-MHF---YNCRPENDWEA---DLDEIRRL 173 (416)
T ss_dssp SHHHHHHHHHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTCE-EEE---EEEEGGGTTEE---CHHHHHHH
T ss_pred CChHHHHHHHHHHhCC---------CCC-EEEEcCCCcHhHHHHHHHcCcE-EEE---eecCcccCCCC---CHHHHHHH
Confidence 9999999999998743 454 8888999998865443322221 110 000000 0112 89999998
Q ss_pred HHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC----cc-ccccCCCCc---cee
Q 012138 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR----ML-ASDWEEVRP---DMV 289 (470)
Q Consensus 218 l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~----~~-~~~~~~~~p---di~ 289 (470)
+++ +++++++..++||+|.++ +++++++|.++|++||++||+||+|+++.+.|. .+ ....++..+ .+.
T Consensus 174 l~~---~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 249 (416)
T 1bw0_A 174 KDD---KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILG 249 (416)
T ss_dssp CCT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEE
T ss_pred hcc---CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEe
Confidence 875 567666443499999998 899999999999999999999999998876664 22 222222221 234
Q ss_pred ecccccc-CCCcceeEEEecHH--HHhhcCcC---CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHH
Q 012138 290 ILGKALG-GGVIPVSAVLADKE--VMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQH 360 (470)
Q Consensus 290 s~sK~l~-gG~~~ig~v~~~~~--~~~~~~~~---~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~ 360 (470)
++||.++ +|+ |+|+++++++ +++.+... ....+++.++++++++.++|+.+.+ +++.++++++++++.+.
T Consensus 250 s~sK~~~~~Gl-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (416)
T 1bw0_A 250 GTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNH 328 (416)
T ss_dssp ESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhCCCCCc-eEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999976 788 9999998663 33333211 1124667899999999888874322 34556666666667666
Q ss_pred HHHHHhhCCCceEEEecc-ceeEEEEeccCCC--chhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGR-GLFNAVEFDKTAL--PVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~ 432 (470)
|++ +| .+....+. |.++++.++.... ..+..++++.|. ++||.+.++. ++++|+++ ..+++++++
T Consensus 329 L~~----~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~ 401 (416)
T 1bw0_A 329 IGE----CI-GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYRE 401 (416)
T ss_dssp HTT----ST-TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHH
T ss_pred HHh----CC-CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHH
Confidence 654 33 34444444 6666666642100 025678888885 7899998763 67999996 478999999
Q ss_pred HHHHHHHHHhcccC
Q 012138 433 GSKALHDVLELDLP 446 (470)
Q Consensus 433 ~~~~l~~~l~~~~~ 446 (470)
++++|.++++ +.+
T Consensus 402 ~l~~l~~~l~-~~~ 414 (416)
T 1bw0_A 402 AVERIKAFCQ-RHA 414 (416)
T ss_dssp HHHHHHHHHH-HHB
T ss_pred HHHHHHHHHH-Hhh
Confidence 9999999998 654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=250.63 Aligned_cols=329 Identities=14% Similarity=0.073 Sum_probs=223.5
Q ss_pred CCeEEeccCCcccccCC--CCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh-----CCCeEEe--cCChhH
Q 012138 74 GNKYLDFLSAYSAVNQG--HCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF-----GYDMVLP--MNTGAE 143 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-----~~~~v~~--~~sGte 143 (470)
+..++||..+....+.+ +.+|.+.+++.++++.... ..| ......++++.+++++ ..++|++ |+||++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT--KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG 102 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC--CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCccc--CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence 45678999886544444 5789999999988765211 112 1223456666666654 3468998 999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---C----CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---G----DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----d~~~Le~ 216 (470)
|++.+++++..+. +|+ .|++..++||+........+... ..++. + |+++|++
T Consensus 103 a~~~~~~~~~~~~-------~gd-~vl~~~p~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~~~d~~~l~~ 161 (394)
T 2ay1_A 103 ALRQALELARMAN-------PDL-RVFVSDPTWPNHVSIMNFMGLPV-------------QTYRYFDAETRGVDFEGMKA 161 (394)
T ss_dssp HHHHHHHHHHHHC-------TTC-CEEEEESCCHHHHHHHHHHTCCE-------------EEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCC-EEEEcCCCChhHHHHHHHcCCce-------------EEEecccccCCccCHHHHHH
Confidence 9999999876431 344 68888999998765544433221 12222 1 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--CccccccC-CCCcc---eee
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLASDWE-EVRPD---MVI 290 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~~~~-~~~pd---i~s 290 (470)
++++++.++++++++.++||||.++ +.+++++|.++|++||+++|+||+|++|++.| ....+..+ ...++ +.|
T Consensus 162 ~l~~~~~~~~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 240 (394)
T 2ay1_A 162 DLAAAKKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHTCCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEe
Confidence 9986433467777677799999998 89999999999999999999999999887654 22112211 11223 348
Q ss_pred cccccc-CCCcceeEEEe---cHHHHhhcCcC---CccCCCC-CCHHHHHHHHHHHHHH------h--hhhHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA---DKEVMLCIQPG---EHGSTFG-GNPLASAVAIASLDVI------R--DEKLAERSAHLG 354 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~---~~~~t~~-~~~~~~aaa~a~l~~~------~--~~~~~~~~~~~~ 354 (470)
+||.++ +|+ |+|++++ ++++++.+... ....+++ .++++++++.++|+.. . .+.+.+++++++
T Consensus 241 ~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 319 (394)
T 2ay1_A 241 CSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLR 319 (394)
T ss_dssp CTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCcCC-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 898 9999998 67654433211 1123343 5888888888888643 1 145677778888
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|+++.... .+....+.+.++.| +.. ....+.+.|.++||.+.++ +||+++ .++++++++++
T Consensus 320 ~~l~~~L~~~~~~~--~~~~~~~~~g~~~~-~~~-----~~~~~~~~l~~~gi~v~~~----~Ris~~-~~~~~~i~~~~ 386 (394)
T 2ay1_A 320 EQLAGELRDLSGSD--RFGFVAEHRGMFSR-LGA-----TPEQVKRIKEEFGIYMVGD----SRINIA-GLNDNTIPILA 386 (394)
T ss_dssp HHHHHHHHHHHTSS--TTTHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhcCCCC--CeeEEcCCceEEEe-eCC-----CHHHHHHHHHhCCEEecCC----CeEEee-cCCHhhHHHHH
Confidence 88888888764210 12122344444444 322 2345677777889999875 699977 47999999999
Q ss_pred HHHHHH
Q 012138 435 KALHDV 440 (470)
Q Consensus 435 ~~l~~~ 440 (470)
++|+++
T Consensus 387 ~~l~~~ 392 (394)
T 2ay1_A 387 RAIIEV 392 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=244.94 Aligned_cols=314 Identities=14% Similarity=0.142 Sum_probs=220.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
+.+|||.+|. +++|++ |.+ + +... ..|......++++.++++++. ++|++++|++++++.+++.+
T Consensus 29 ~~~i~l~~~~--~~~~~~-~~v--a----~~~~----~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 29 NGDVWLNANE--YPTAVE-FQL--T----QQTL----NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp TCSEECSSCC--CSSCCC-CCC--C----CCCT----TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CceEEeeCCC--CCCCCC-HhH--h----hhhh----ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH
Confidence 4689999886 446654 555 1 1111 123333367888999988874 58999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.. +|++.|++..++|++........+... .. .+...+ ..+ |+++|+++++ ++++|+++.
T Consensus 96 ~~---------~g~d~Vl~~~p~~~~~~~~~~~~g~~~-~~---v~~~~~-~~~---d~~~l~~~i~----~~~~v~l~~ 154 (356)
T 1fg7_A 96 CE---------PGKDAILYCPPTYGMYSVSAETIGVEC-RT---VPTLDN-WQL---DLQGISDKLD----GVKVVYVCS 154 (356)
T ss_dssp CC---------TTTCEEEECSSSCTHHHHHHHHHTCEE-EE---CCCCTT-SCC---CHHHHHTSCT----TEEEEEEES
T ss_pred hC---------CCCCEEEEeCCChHHHHHHHHHcCCEE-EE---eeCCCC-CCC---CHHHHHHHhc----CCCEEEEeC
Confidence 53 452488889999988765544332211 11 111111 112 7888887774 577888666
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccCCCCcceeecccccc-CCCcceeEEEecHH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKE 310 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~ 310 (470)
++||||.++ +.+++++|.++|+ ||+++|+||+|++|+........ +.++....+.||||.++ +|+ |+|+++++++
T Consensus 155 p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~ 231 (356)
T 1fg7_A 155 PNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGL-RCGFTLANEE 231 (356)
T ss_dssp SCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGG-CCEEEEECHH
T ss_pred CCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchh-hhEEEEeCHH
Confidence 699999999 8899999999999 99999999999987632222222 22333344669999998 898 9999999999
Q ss_pred HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 311 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 311 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+++.+... ..+|+.++++++++.++|+... -+...++++++++++.+.|+++ |......++.|.++++.+.
T Consensus 232 ~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 305 (356)
T 1fg7_A 232 VINLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARFK 305 (356)
T ss_dssp HHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEET
T ss_pred HHHHHHHh--cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceEECCCCCeEEEEECC
Confidence 98887643 3456789999998888886432 2345566666777777777663 2123334566777777664
Q ss_pred cCCCchhHHHHHHHHHHcCceecc-CC----CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 388 KTALPVSAYDICLKMKERGILAKP-TH----DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~-~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+..+++++|.++||.+.+ +. .+++|++++ +++++++++++|+++
T Consensus 306 ------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 306 ------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp ------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred ------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 356899999999999988 42 469999954 689999999988754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=249.32 Aligned_cols=315 Identities=15% Similarity=0.113 Sum_probs=225.2
Q ss_pred CCCCCHHHHHHHHHHHHHccccCC----CCC--CCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHH-HHhchhc
Q 012138 89 QGHCHPKIMKALQEQAEKLTLSSR----AFY--NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLA-RKWGYVK 159 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~~~----~~~--~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~-~~~~~~~ 159 (470)
.|+.++++.+++.++++....... .+. .+...++++.++++++.+ ++++++||++|++.+++.+ ..
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~----- 99 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH----- 99 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC-----
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCC-----
Confidence 466889999999999876432111 121 145678999999998765 7999999999999999877 32
Q ss_pred ccCCCCCcEEEEEccCccccccch---hcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeEEEEEccccC
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 235 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n 235 (470)
+|+ .|++..++||+..... ....+..... .+..+ +... .|+++|++++++ ++++|++++++|
T Consensus 100 ----~gd-~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~~---~d~~~l~~~i~~---~~~~v~~~~~~n 165 (390)
T 1elu_A 100 ----QGD-EILLTDCEHPGIIAIVQAIAARFGITYRF---FPVAATLNQG---DAAAVLANHLGP---KTRLVILSHLLW 165 (390)
T ss_dssp ----TTC-EEEEETTCCHHHHHHHHHHHHHHCCEEEE---ECCGGGSSSS---CHHHHHHTTCCT---TEEEEEEESBCT
T ss_pred ----CCC-EEEEecCcccHHHHHHHHHHHHhCcEEEE---EcCCCCCCcc---chHHHHHHhcCC---CceEEEEecccc
Confidence 344 8889999998765321 1111111110 01100 0011 168888888865 789999888899
Q ss_pred CCccccCChhhHHHHHHHHH----hcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecH
Q 012138 236 EAGVIIPPDGYLKAVRDLCS----KYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 236 ~~G~~~~~~~~l~~l~~l~~----~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~ 309 (470)
|+|.+.| +++|.++|+ +||+++|+||+|+ +|... +.. ....+|++ +++|.+.||. ++|++++++
T Consensus 166 ptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~--~~~--~~~~~d~~~~s~~K~~~~~~-g~G~~~~~~ 235 (390)
T 1elu_A 166 NTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP--LDF--SRLEVDYYAFTGHKWFAGPA-GVGGLYIHG 235 (390)
T ss_dssp TTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC--CCT--TTSCCSEEEEESSSTTCCCT-TCEEEEECT
T ss_pred CCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC--CCh--hhcCCCEEEccccccccCCC-ceEEEEECH
Confidence 9999997 999999999 9999999999997 43222 112 22345766 5899888887 899999999
Q ss_pred HHHhhcCcCC----------------------ccCCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 012138 310 EVMLCIQPGE----------------------HGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 310 ~~~~~~~~~~----------------------~~~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~ 363 (470)
++++.+.+.. .....+.++++++++.++++.+.+. .+.++.+++++++.+.|++
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 315 (390)
T 1elu_A 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315 (390)
T ss_dssp TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9988876532 1122356778888888888876553 3667777778888877776
Q ss_pred HHhhCCCceEEE---eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 364 IQQQFPNYVKEV---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 364 l~~~~p~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
+ | .+... ++.|.++.|.+... .+..++.+.|.++||.+.++. .+++||+++..++++++++++++|++
T Consensus 316 ~----~-g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 316 L----P-HVHCLATSAPQAGLVSFTVDSP---LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp S----T-TEEESCSSCCSSSEEEEEECSS---SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred c----C-CcEEecCccccccEEEEEcCCC---CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 4 1 23333 45788888877532 257789999999999998874 68999999889999999999998865
Q ss_pred H
Q 012138 440 V 440 (470)
Q Consensus 440 ~ 440 (470)
+
T Consensus 388 ~ 388 (390)
T 1elu_A 388 F 388 (390)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=250.55 Aligned_cols=342 Identities=11% Similarity=0.067 Sum_probs=226.0
Q ss_pred eCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCCC-CCcHHHHHHHHhhhh----C--CCeEEecCCh
Q 012138 71 DPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAFY-NDKFPVFAERLTSMF----G--YDMVLPMNTG 141 (470)
Q Consensus 71 d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~-~~~~~~l~~~l~~~~----~--~~~v~~~~sG 141 (470)
+.+|+.+|||..+. +....+|.|.+++.++++...... ..|. .....++++.+++++ + .+.|++++|+
T Consensus 52 ~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGD---TTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCC---CCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCC---CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 34578899999883 344589999999999998654311 1121 223456666666653 3 4679999999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES 221 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~ 221 (470)
++++..+ ..+.. +|+ .|++..++|++.............+.. .......+..++.++.+.+...+++.
T Consensus 129 ~~al~~l-~~l~~---------~gd-~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (432)
T 3ei9_A 129 KCDISRL-QVMFG---------SNV-TIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLSTV 196 (432)
T ss_dssp HHHHHHH-HHHHC---------TTC-CEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGGC
T ss_pred HHHHHHH-HHHcC---------CCC-EEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhhC
Confidence 9999874 43333 455 788899999876554433322111000 00000112344433211111111111
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC----CCCcceeecccccc-
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE----EVRPDMVILGKALG- 296 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~----~~~pdi~s~sK~l~- 296 (470)
.++++|+++.++||+|.++ +.+++++|+++|++||++||+||+|++|...+........ +....+.||||.++
T Consensus 197 -~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 274 (432)
T 3ei9_A 197 -GRTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGF 274 (432)
T ss_dssp -CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCT
T ss_pred -CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCC
Confidence 2567777555699999999 8999999999999999999999999987655443322222 22234569999998
Q ss_pred CCCcceeEEEecHHH--------HhhcCcCCccCCCCCCHHHHHHHHHHHHHH--h-hhhHHHHHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLADKEV--------MLCIQPGEHGSTFGGNPLASAVAIASLDVI--R-DEKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 297 gG~~~ig~v~~~~~~--------~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~--~-~~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+|+ |+|++++++++ ++.+........++.++++++++.+++... + .+++.++++++.+++.+.|++++
T Consensus 275 ~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 353 (432)
T 3ei9_A 275 TGV-RLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG 353 (432)
T ss_dssp TTT-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccc-ceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 898 99999998887 555543333445568899998888887521 1 14567777888888888887641
Q ss_pred hhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 366 QQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 366 ~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+....+ .|.++++.+. . .+..++++.|+++ ||.+.|+ +.+++||+ +..++++|++++++|
T Consensus 354 ------~~~~~~~~~~~~~~~~~-~---~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl 421 (432)
T 3ei9_A 354 ------YDVYGGKNAPYVWVHFP-N---QSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRF 421 (432)
T ss_dssp ------CCEEECSSSSEEEEECT-T---SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHH
T ss_pred ------ceecCCCcceEEEEECC-C---CCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHH
Confidence 333343 5666666655 2 2577888888766 9999865 36899999 577999999999999
Q ss_pred HHHHh
Q 012138 438 HDVLE 442 (470)
Q Consensus 438 ~~~l~ 442 (470)
++--.
T Consensus 422 ~~~~~ 426 (432)
T 3ei9_A 422 KQLYK 426 (432)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=246.25 Aligned_cols=334 Identities=14% Similarity=0.162 Sum_probs=232.1
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC----CCC---CCcHHHHHHHHhhhhCC---CeEEecCChh
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR----AFY---NDKFPVFAERLTSMFGY---DMVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~----~~~---~~~~~~l~~~l~~~~~~---~~v~~~~sGt 142 (470)
+|+.+++|..+.. ++.++++.+++.++++.....+. .+. .+...++++.++++++. +++++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 5677788877643 25789999999999987432111 111 23467888999999987 7899999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
+|++.+++++.+.. . .+|+ .|++..++||+.... .....+.... +.+... ... .|+++|+++++
T Consensus 101 ~a~~~~~~~~~~~~-~----~~gd-~Vl~~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~-~~~---~d~~~l~~~l~ 167 (420)
T 1t3i_A 101 EAINLVAYSWGMNN-L----KAGD-EIITTVMEHHSNLVPWQMVAAKTGAVLK---FVQLDE-QES---FDLEHFKTLLS 167 (420)
T ss_dssp HHHHHHHHHTHHHH-C----CTTC-EEEEETTCCGGGTHHHHHHHHHHCCEEE---EECBCT-TSS---BCHHHHHHHCC
T ss_pred HHHHHHHHHhhhcc-c----CCCC-EEEECcchhHHHHHHHHHHHHhcCcEEE---EeccCC-CCC---cCHHHHHHhhC
Confidence 99999999873200 0 1344 888999999885421 1111111111 011100 011 28999999987
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g 297 (470)
+ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+. +... +....++ +|++ +++|.++
T Consensus 168 ~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~--~~~~~~~--~di~~~s~sK~~~- 234 (420)
T 1t3i_A 168 E---KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA-PHYP--LDVQLID--CDWLVASGHKMCA- 234 (420)
T ss_dssp T---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC--CCHHHHT--CSEEEEEGGGTTS-
T ss_pred C---CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc-CCcc--CchhhcC--CCEEEEehhhhcC-
Confidence 5 7899998888999999997 99999999999999999999983 2211 1222233 5766 5559554
Q ss_pred CCcceeEEEecHHHHhhcCcCCccC--------------------CCCCCHHHHHHHHH-HHHHHhh---hhHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGS--------------------TFGGNPLASAVAIA-SLDVIRD---EKLAERSAHL 353 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~--------------------t~~~~~~~~aaa~a-~l~~~~~---~~~~~~~~~~ 353 (470)
+. ++|++++++++++.+.....+. ..+.+++.++++.. +++.+.+ +.+.++.+++
T Consensus 235 ~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 PT-GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp CT-TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CC-ceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33 5899999999998886543321 12345555555444 6777654 5577778888
Q ss_pred HHHHHHHHHHHHhhCCCceEEEec------cceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-----------C-CC
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRG------RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-----------H-DT 415 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------~-~~ 415 (470)
++++.+.|+++ | .+....+ .|.++.|.+.. .+..++.+.|.++||.+.++ + .+
T Consensus 314 ~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~ 384 (420)
T 1t3i_A 314 THYLWQGLGQI----P-QLRLYGPNPKHGDRAALASFNVAG----LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASG 384 (420)
T ss_dssp HHHHHHHHHTC----T-TEEEESCCGGGSCBCSEEEEEETT----BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCC
T ss_pred HHHHHHHHHhC----C-CeEEeCCCccccccCCEEEEEECC----CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCC
Confidence 88888887763 2 2333333 37888887642 25678899999999999887 2 67
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
++|++++..++++++++++++|+++++ ++++
T Consensus 385 ~iRis~~~~~~~~~i~~~~~~l~~~~~-~~~~ 415 (420)
T 1t3i_A 385 SARASLYFYNTKEEIDLFLQSLQATIR-FFSD 415 (420)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHH-HTC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHH-HhcC
Confidence 999999988899999999999999998 7654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=240.97 Aligned_cols=320 Identities=14% Similarity=0.068 Sum_probs=218.0
Q ss_pred CCCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhc--ccC-C
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVK--KKF-S 163 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~--~~~-~ 163 (470)
..+|++.+++.+++......+..+ ..+...+++++++++++. +++++++||++|++.++++++...... ++. .
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 367899999999886533222211 234456788999998864 578999999999999999887621000 000 0
Q ss_pred CCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 012138 164 IDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G 238 (470)
.+++.|++..++|++....... .+.. +..++.+ |+++|+++++++ ++++|++++++||+|
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~-~g~~------------~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG 185 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREM-MDLE------------YIYAPIKEDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELG 185 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHH-HTCE------------EEEECBCTTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTC
T ss_pred CCCeEEEECCcchhHHHHHHHH-cCce------------eEEEeeCCCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCC
Confidence 1244888889887664333322 2211 1233322 899999999874 567777777799999
Q ss_pred cccCChhhHHHHHHHHHhcCcEEEEeccccCC--cccCC---------ccccccCCCCcceeeccccccCCCcceeEEEe
Q 012138 239 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGL--ARSGR---------MLASDWEEVRPDMVILGKALGGGVIPVSAVLA 307 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~--g~~G~---------~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~ 307 (470)
.+.| +++|.++|++||++||+||+|+++ +..+. .+.+.. +++..+.+++|.+++|. ++|++++
T Consensus 186 ~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~-~~g~~~~ 259 (397)
T 3f9t_A 186 TIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI-PSGGILF 259 (397)
T ss_dssp CBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS-SCEEEEE
T ss_pred CCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC-CceEEEE
Confidence 9997 999999999999999999999964 23332 233334 55555668889988887 9999887
Q ss_pred cHH-HHhhcC---cCCc--------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 308 DKE-VMLCIQ---PGEH--------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 308 ~~~-~~~~~~---~~~~--------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+++ +.+.+. +... ++..+.+++++.++.+.+....-+++.++.+++++++.+.|++++.. .+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~-- 334 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFK---PVI-- 334 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---BSS--
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEc--
Confidence 554 444432 1111 12222345555555554433323567778888888898888876211 121
Q ss_pred eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.+.++++.+. ...++.+.|.++||.+.++. ++++|++++..+|++++++++++|+++++
T Consensus 335 ~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 335 EPILNIVAIEDE------DYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CCSSSEEEEECT------THHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCCccEEEEEeC------CHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 245666666443 36789999999999998875 58999999988999999999999999875
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=253.20 Aligned_cols=298 Identities=13% Similarity=0.102 Sum_probs=199.1
Q ss_pred cHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC----cEEEEE-ccCccccccchhcccC
Q 012138 118 KFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE----AIIVSC-CGCFHGRTLAAISMSC 188 (470)
Q Consensus 118 ~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~----~~ii~~-~~~yhg~~~~~~~~~~ 188 (470)
+++.+++++.+.+| .++|++|+||++|++.+++.+.. +|+ ..|++. .++||+..........
T Consensus 80 lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~---------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~ 150 (417)
T 3g7q_A 80 LLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG---------RRADGSTKKVLFPLAPEYIGYADSGLEDDL 150 (417)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB---------C----CCBEEEESSCCCHHHHHC-----CC
T ss_pred HHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC---------CCccCCcceEEEeCCCccccchhhccchhh
Confidence 34445555544333 46899999999999999998754 333 256664 9999887554322111
Q ss_pred CcccccCCCCCCCCeeeecCC------CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 189 DNEAIRGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
.... .+.+..++.+ |+++|+ ++ +++++|+++.++||+|.++ +.+.+++|.++|++||+++|
T Consensus 151 ~~~~-------~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li 217 (417)
T 3g7q_A 151 FVSA-------RPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLV 217 (417)
T ss_dssp EEEC-------CCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEE
T ss_pred hccc-------cCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEE
Confidence 0000 0111122211 777777 33 3788888766699999999 88889999999999999999
Q ss_pred EeccccCCcccCCcc-c--cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH
Q 012138 263 ADEIQSGLARSGRML-A--SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~-~--~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 339 (470)
+||+|+.+. .+..+ . .+..+....+.||||...+|+ |+|++++++++++.+.......+++.++++++++.+.++
T Consensus 218 ~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (417)
T 3g7q_A 218 IDNAYGVPF-PGIIFSEARPLWNPNIILCMSLSKLGLPGS-RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIK 295 (417)
T ss_dssp EECTTCTTT-TCCBCSCCCCCCCTTEEEEEESGGGTCTTS-CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHH
T ss_pred EeCCCcccc-ccccccccccCCCCCEEEEEechhccCCCc-ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHc
Confidence 999997431 11111 0 111222334669999766898 999999999999988776667778888999988888776
Q ss_pred HHhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC
Q 012138 340 VIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 340 ~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
...- +.+.++++++.+.+.+.|++....+ .+.... ..|.++++.+.... .+..++++.|.++||.+.|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~ 371 (417)
T 3g7q_A 296 RNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEE--RCLIHKPEGAIFLWLWFKDLP--ITTELLYQRLKARGVLMVPGH 371 (417)
T ss_dssp TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTT--TCEEECCCBSSEEEEECTTCS--SCHHHHHHHHHHTTEECEEGG
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CceeeCCCcceEEEEEcCCCC--CCHHHHHHHHHHCCEEEECch
Confidence 3221 1244556666666766666532211 133333 44566666665411 367889999999999988642
Q ss_pred -------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 414 -------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 -------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+++||+++. ++++|++++++|.++++ ++.
T Consensus 372 ~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~-~~~ 414 (417)
T 3g7q_A 372 YFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIE-RAW 414 (417)
T ss_dssp GGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHH-HHH
T ss_pred hhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHH-HHH
Confidence 4689999764 99999999999999998 653
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=241.59 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=230.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKL 151 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~ 151 (470)
+.|+|..+. ++.+|++.+++.+++.. +++. ...+.+.++++++++++|.+ .+++++||++|++.+++.
T Consensus 20 ~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAGP------VACFPEVLEIMKVQMFS--HRSK-EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSSS------CCCCHHHHHHTTSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCCC------cCCcHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 356665322 34678898888766532 1111 12456788999999988864 599999999999999997
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCe
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQI 225 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~ 225 (470)
+.. +|+ .|++..++||+.. .......+.. +..++. .|+++|++++++. .++
T Consensus 91 l~~---------~gd-~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~-~~~ 147 (386)
T 2dr1_A 91 GVS---------KGG-KVLVTIIGAFGKRYKEVVESNGRK------------AVVLEYEPGKAVKPEDLDDALRKN-PDV 147 (386)
T ss_dssp HSC---------TTC-EEEEEESSHHHHHHHHHHHHTTCE------------EEEEECCTTCCCCHHHHHHHHHHC-TTC
T ss_pred hhc---------CCC-eEEEEcCCchhHHHHHHHHHhCCc------------eEEEecCCCCCCCHHHHHHHHhcC-CCC
Confidence 743 344 8888999998732 1111112211 112221 3899999999642 267
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig 303 (470)
++|++++++||+|.+.| +++|.++|++||++||+||+|+.+.. .+....+ .+|++ +++|+++++. ++|
T Consensus 148 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~---~~~~~~~--~~di~~~s~sK~~~~~~-g~G 217 (386)
T 2dr1_A 148 EAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGGA---DIKFDKW--GLDVVFSSSQKAFGVPP-GLA 217 (386)
T ss_dssp CEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB---CCCTTTT--TCSEEEEETTSTTCCCS-SCE
T ss_pred cEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccCc---ccccccc--CCcEEEEeccccccCCC-ceE
Confidence 88888888999999997 99999999999999999999983321 1222223 34766 5559999776 789
Q ss_pred EEEecHHHHhhcCcC------------------CccCCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHH
Q 012138 304 AVLADKEVMLCIQPG------------------EHGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHL 361 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~------------------~~~~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L 361 (470)
++++++++++.+.+. ....+++.++++++++.++|+.+.+. .+.++++++++++.+.|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L 297 (386)
T 2dr1_A 218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV 297 (386)
T ss_dssp EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999988876421 12345678899999999999887543 67788888999999988
Q ss_pred HHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 362 ~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
++++.. ..... ...+.++++.++.. .+..++++.|.++||.+.++ ..+++|++++..++++++++++++
T Consensus 298 ~~~g~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 371 (386)
T 2dr1_A 298 REIGLD---ILAEPGHESPTITAVLTPPG---IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371 (386)
T ss_dssp HHTTCC---BSSCTTCBCSSEEEEECCTT---CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHH
T ss_pred HHcCCe---eCcCccccCCceEEEEcCCC---CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 875211 11100 01466777766532 26788999999999999876 357999998888999999999999
Q ss_pred HHHHHhccc
Q 012138 437 LHDVLELDL 445 (470)
Q Consensus 437 l~~~l~~~~ 445 (470)
|+++++ ++
T Consensus 372 l~~~~~-~~ 379 (386)
T 2dr1_A 372 LREVIN-EL 379 (386)
T ss_dssp HHHHHH-HH
T ss_pred HHHHHH-Hc
Confidence 999998 65
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=250.05 Aligned_cols=303 Identities=14% Similarity=0.162 Sum_probs=202.6
Q ss_pred cHHHHHHHHhhhh----CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC--------------cEEEEEccCcccc
Q 012138 118 KFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE--------------AIIVSCCGCFHGR 179 (470)
Q Consensus 118 ~~~~l~~~l~~~~----~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~--------------~~ii~~~~~yhg~ 179 (470)
+++++++++.+.+ ..++|++|+||++|++.+++.+.. +|+ .+|++..++|++.
T Consensus 88 lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~---------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~ 158 (444)
T 3if2_A 88 FIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG---------AFVNEHSQDKESKSVDKSILLPLTPEYIGY 158 (444)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE---------EEECC-------CEEEEEEEESSSSCCGGG
T ss_pred HHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC---------CCccccccccccccccceEEEeCCCCccch
Confidence 3444455544433 346899999999999999987754 233 2344458888776
Q ss_pred ccchhcccCCcccccCCCCCCCCeeeecC----------CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 180 TLAAISMSCDNEAIRGFGPLLPGHLKVDF----------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
.........-... ...+..++. -|+++|++++....+++++|+++.++||+|.++ +.+.+++
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~ 230 (444)
T 3if2_A 159 SDVHVEGQHFAAV-------LPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-TDEEMAH 230 (444)
T ss_dssp TTCCSSSCCEEEC-------CCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-CHHHHHH
T ss_pred hhcccccchhhcc-------CceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-CHHHHHH
Confidence 5432111000000 001111220 189999988543223788888765599999999 8889999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCcc-c--cccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCC
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRML-A--SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~-~--~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~ 326 (470)
|.++|++||++||+||+|+.+. .+..+ . ....+...++.||||.+.+|+ |+|++++++++++.+.......+++.
T Consensus 231 i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~ 308 (444)
T 3if2_A 231 LAEIAKRYDIPLIIDNAYGMPF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGM-RTGIIVADAKVIEAVSAMNAVVNLAP 308 (444)
T ss_dssp HHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHCCCEEEEECCCCCcc-cccccccccccCCCCEEEEechhhccCCCC-ceEEEEECHHHHHHHHHHHHhccCCC
Confidence 9999999999999999997431 11111 0 112233445679999866898 99999999999998876666667778
Q ss_pred CHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHH
Q 012138 327 NPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICL 400 (470)
Q Consensus 327 ~~~~~aaa~a~l~~~~~-----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 400 (470)
+++.++++.+.++.... +.+.++++++.+.+.+.|.+..... .+... +..|.++++.+.... .+..++++
T Consensus 309 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~ 384 (444)
T 3if2_A 309 TRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY--PLMIHKPEGAIFLWLWFKDLP--ISTLDLYE 384 (444)
T ss_dssp CCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS--SEEEECCCBSSEEEEEETTCS--SCHHHHHH
T ss_pred ChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CceEecCCccEEEEEEcCCCC--CCHHHHHH
Confidence 88888888877764221 1244555666666666665532211 13333 345666777665421 36788999
Q ss_pred HHHHcCceeccCC--------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 401 KMKERGILAKPTH--------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 401 ~l~~~Gv~~~~~~--------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.|.++||.+.|+. .+++||+++. ++++|++++++|.++++ ++.
T Consensus 385 ~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~-~~~ 441 (444)
T 3if2_A 385 RLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR-ELY 441 (444)
T ss_dssp HHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH-HHH
Confidence 9999999988652 1589999775 99999999999999998 654
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=246.64 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=221.2
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC--CCC-CCCcHHHHHHHHhhh--hC---CCeEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS--RAF-YNDKFPVFAERLTSM--FG---YDMVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~-~~~~~~~l~~~l~~~--~~---~~~v~~~~sGteA~ 145 (470)
|+.+|||..+... + ..+|.+.+++.++++...... ..| ......++++.++++ .| .++|++++|+++++
T Consensus 32 ~~~~i~l~~~~~~--~-~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDTT--Q-PLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCCC--C-CCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCCC--C-CCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 6678899888543 2 278999999999987653211 112 123457888888887 35 46899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCH----HHHHHHHHhc
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI----TALEKIFKES 221 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~Le~~l~~~ 221 (470)
+.+++++ . +|+ .|++..++|++........ +... +..++.++- .++++.
T Consensus 109 ~~~~~~~-~---------~gd-~Vl~~~p~y~~~~~~~~~~-g~~~-----------~~~~~~~~~~~~~~~l~~~---- 161 (400)
T 3asa_A 109 FRLLSFF-G---------PNQ-TVAIQDPSYPAYLDIARLT-GAKE-----------IIALPCLQENAFFPEFPED---- 161 (400)
T ss_dssp HHHHHHH-C---------SSC-EEEEEESCCHHHHHHHHHT-TCSE-----------EEEEECCGGGTTCCCCCTT----
T ss_pred HHHHHHc-C---------CCC-EEEECCCCcHHHHHHHHHc-CCcc-----------eEecccchhcCcccChhhc----
Confidence 9866543 2 454 7888999998765433222 2110 112221100 012111
Q ss_pred CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCC----CCcceeecccccc
Q 012138 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEE----VRPDMVILGKALG 296 (470)
Q Consensus 222 ~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~----~~pdi~s~sK~l~ 296 (470)
.++++|+++.++||+|.++ +.+++++|.++|++||++||+||+|++|++.|.. .....++ ....+.+|||.++
T Consensus 162 -~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 239 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG 239 (400)
T ss_dssp -CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT
T ss_pred -cCccEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC
Confidence 2677777656699999998 8999999999999999999999999988766542 2222222 1223569999998
Q ss_pred -CCCcceeEEEecHHH-------HhhcCcCCccCCC-CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 297 -GGVIPVSAVLADKEV-------MLCIQPGEHGSTF-GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~-------~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
+|+ |+|++++++++ ++.+.......++ +.++++++++.++|+....++++++++++++++.+.|++++
T Consensus 240 ~~Gl-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 316 (400)
T 3asa_A 240 FAGI-RLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATG-- 316 (400)
T ss_dssp TTTC-CCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred Ccch-heeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHCC--
Confidence 898 99999998887 4444222223334 57899998888888764335678888888899988887741
Q ss_pred CCCceEEEec-cceeEEEE-eccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 368 FPNYVKEVRG-RGLFNAVE-FDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 368 ~p~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
+....+ .|.++++. +... .+..++++.|.++ ||.+.|+ ..+++||+ +..+++++++++++|+
T Consensus 317 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~ 387 (400)
T 3asa_A 317 ----FEVFGGEHAPYLWVKPTQAN---ISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQ 387 (400)
T ss_dssp ----CEEEECSSSSEEEEECCCTT---CCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHH
T ss_pred ----CeeeCCCCceEEEEeccCCC---CCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHH
Confidence 333444 46666666 4322 1345688888765 9998875 25789999 6789999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ +.
T Consensus 388 ~~~~-~~ 393 (400)
T 3asa_A 388 MAPA-LQ 393 (400)
T ss_dssp C------
T ss_pred HHHH-hh
Confidence 9887 54
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=249.85 Aligned_cols=344 Identities=13% Similarity=0.099 Sum_probs=229.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHH--HHHHHccccCCCC--CCCcHHHHHHHHhhhhCC--CeEEecCChhHHHH--HH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQ--EQAEKLTLSSRAF--YNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVE--TA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~--~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~--~a 148 (470)
.+||..|.....+++.+|.+.+++. +.++. ......| ...-..++++.++++++. ++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-TEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-chhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4688877554333446667877775 33331 1111122 123357888888888864 58999999999997 77
Q ss_pred HHHHHHhchhcccCCCC--------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 149 LKLARKWGYVKKKFSID--------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
++.+.... +| ++.|++..++|++........+..... .+...+ .+ |+++|++++++
T Consensus 106 ~~~l~~~~-------~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~--g~---d~~~l~~~l~~ 169 (423)
T 3ez1_A 106 TFALLHGV-------RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLT----VDMQSD--GP---DVDAVERLAGT 169 (423)
T ss_dssp HHHHHTCC-------TTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEE----EEEETT--EE---CHHHHHHHHHS
T ss_pred HHHHhccC-------CCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEe----ccCCCC--CC---CHHHHHHHHhh
Confidence 77665300 12 358889999998765544333221110 000011 12 89999999962
Q ss_pred cCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHH-HhcCcEEEEeccccCCcccC---C----cccc----ccCCCCcc
Q 012138 221 SGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYNILMIADEIQSGLARSG---R----MLAS----DWEEVRPD 287 (470)
Q Consensus 221 ~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~-~~~gillI~Dev~~g~g~~G---~----~~~~----~~~~~~pd 287 (470)
..++++|+++| ++||||.++ +.+++++|.++| ++||++||+||+|+.+...+ . .+.. +..+....
T Consensus 170 -~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (423)
T 3ez1_A 170 -DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFV 247 (423)
T ss_dssp -CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEE
T ss_pred -CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEE
Confidence 13789998775 799999999 888899999999 99999999999999532222 1 1111 12233344
Q ss_pred eeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHH-Hh---h--hhHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IR---D--EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 288 i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~---~--~~~~~~~~~~~~~l~~~L 361 (470)
+.||||.+.+|+ |+|++++++++++.+.......+++.+++.+.++.++++. .. + ....+.++++.+.+.+.|
T Consensus 248 ~~S~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 326 (423)
T 3ez1_A 248 FASTSKITFAGA-GLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVL 326 (423)
T ss_dssp EEESTTTSCSSS-SCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCchhhccCCc-ceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999977898 9999999999999887766667788999999998888875 11 1 122333344444444555
Q ss_pred HHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-C---------CCCEEEEecCCCCCHHHH
Q 012138 362 FKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-T---------HDTIVRLTPPLSISSNEL 430 (470)
Q Consensus 362 ~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~---------~~~~iR~~~~~~~t~e~i 430 (470)
.+.....+..+... +..|.++++.+... +...+.+.|.++||.+.| + ..+++||+++.. +++++
T Consensus 327 ~~~l~~~~~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i 401 (423)
T 3ez1_A 327 RAELGEGGEYATWTLPKGGYFISLDTAEP----VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEV 401 (423)
T ss_dssp HHHHTTTTSSEEECCCSBSSCEEEEESSS----CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHH
T ss_pred HHhcCcCCCceEEeCCCccEEEEEECCCC----cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHH
Confidence 44222111013322 34566777766542 467888999999999988 2 258999998655 99999
Q ss_pred HHHHHHHHHHHhcccC
Q 012138 431 QEGSKALHDVLELDLP 446 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~ 446 (470)
++++++|.++++ ++.
T Consensus 402 ~~~~~~l~~~l~-~~~ 416 (423)
T 3ez1_A 402 RTAMQVVAACIR-LAT 416 (423)
T ss_dssp HHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHH-HHH
Confidence 999999999998 653
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=246.74 Aligned_cols=332 Identities=11% Similarity=0.022 Sum_probs=221.9
Q ss_pred CeEEeccCCcccccCCCCC--HHHHHHHHHHHHHcc-c--cCCCCCCCcHHHHHHHHhhhhC----CC--eEEecCChhH
Q 012138 75 NKYLDFLSAYSAVNQGHCH--PKIMKALQEQAEKLT-L--SSRAFYNDKFPVFAERLTSMFG----YD--MVLPMNTGAE 143 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~----~~--~v~~~~sGte 143 (470)
..+|||..|....+.++.+ |.|.+++.++++... + .+.....++++.+++++....+ .+ ++++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 3568998886555666665 899999999987622 1 1112233445566666654433 45 8999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----C---CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----G---DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~Le~ 216 (470)
|+..+++++.... +|+ .|++..++|++........+.. +..+++ + |+++|++
T Consensus 129 al~~~~~~~~~~~-------~gd-~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~~ 187 (420)
T 4f4e_A 129 ALKIGADFLRTLN-------PKA-KVAISDPSWENHRALFDMAGFE-------------VVAYPYYDAKTNGVNFDGMLA 187 (420)
T ss_dssp HHHHHHHHHHHHC-------TTC-CEEEEESCCHHHHHHHHHTTCC-------------EEEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCC-EEEEeCCCcHhHHHHHHHcCCe-------------EEEeeeeccccCccCHHHHHH
Confidence 9999977543210 454 7888999998765444433322 123332 2 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC--cccc----ccCCCCcceee
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR--MLAS----DWEEVRPDMVI 290 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~--~~~~----~~~~~~pdi~s 290 (470)
.++++.+++++++++.++||||.++ +.+.+++|.++|++||+++|+||+|.+|.+.+. .... +..+....+.|
T Consensus 188 ~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 266 (420)
T 4f4e_A 188 ALNGYEPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSS 266 (420)
T ss_dssp HHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEe
Confidence 9986545788888888899999999 899999999999999999999999998876541 1111 11222223448
Q ss_pred cccccc-CCCcceeEEEe---cHHHHhhc----CcCCccCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA---DKEVMLCI----QPGEHGSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHLG 354 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~---~~~~~~~~----~~~~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~ 354 (470)
|||.++ +|+ |+|++++ ++++++.+ .......+.+.+.++++++.+.++.. ++ +.+++++++++
T Consensus 267 ~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 267 FSKSFSLYGE-RVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp CTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCcCcCC-CcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 798 9999863 56655432 21112334446677777766656531 11 45667777788
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|+++... ..+....+.+.++.| +.. +...+.+.|.++||.+.++. |++++ .++++++++++
T Consensus 346 ~~l~~~L~~~~~~--~~~~~~~~~~g~~~~-~~~-----~~~~~~~~l~~~gI~v~~~~----Ris~~-~~~~~~i~~~~ 412 (420)
T 4f4e_A 346 NGLVERLKAAGIE--RDFSFINAQRGMFSY-SGL-----TSAQVDRLREEFGIYAVSTG----RICVA-ALNTRNLDVVA 412 (420)
T ss_dssp HHHHHHHHHTTCS--SCCTHHHHSCSSEEE-CCC-----CHHHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhcCCC--CCceeECCCccEEEE-eCC-----CHHHHHHHHHhCCEEecCCC----eEEEe-cCCHHHHHHHH
Confidence 8888887765321 012223345555555 322 34566777778899998863 99875 34778899999
Q ss_pred HHHHHHHh
Q 012138 435 KALHDVLE 442 (470)
Q Consensus 435 ~~l~~~l~ 442 (470)
++|+++++
T Consensus 413 ~~l~~~l~ 420 (420)
T 4f4e_A 413 NAIAAVLK 420 (420)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998864
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=248.77 Aligned_cols=342 Identities=13% Similarity=0.085 Sum_probs=226.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHH--HHHHHHccccCCCCC-CCcHHHHHHHHhhhhCC--CeEEecCChhHHH--HHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKAL--QEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETAL 149 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~--~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~--~~al 149 (470)
.+||..|.......+.++.+.+++ .++++........|. ..-..++.+.++++++. ++|++|+|+++++ +.++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 467777644333222233455544 333332211112222 22357788888887754 6899999999999 5777
Q ss_pred HHHHHhchhcccCCCC---------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 150 KLARKWGYVKKKFSID---------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g---------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
+++.... ++ ++.|++..++|++........+..... .+...+ .+ |+++|+++++.
T Consensus 115 ~~l~~~~-------~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~----v~~~~~--g~---d~~~l~~~l~~ 178 (427)
T 3ppl_A 115 WSYIFGN-------NDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMIS----VPMNED--GP---DMDAVEELVKN 178 (427)
T ss_dssp HHHHHCC-------TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEE----EEEETT--EE---CHHHHHHHTTS
T ss_pred HHHhccC-------CcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEE----eCCCCC--CC---CHHHHHHHHhc
Confidence 7665410 11 348889999998765444333221100 010011 12 89999999853
Q ss_pred cCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHH-HhcCcEEEEeccccCCcccCCc------ccc----ccCCCCcce
Q 012138 221 SGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYNILMIADEIQSGLARSGRM------LAS----DWEEVRPDM 288 (470)
Q Consensus 221 ~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~-~~~gillI~Dev~~g~g~~G~~------~~~----~~~~~~pdi 288 (470)
.++++|+++| ++||||.++ +.+.+++|.++| ++||++||+||+|+++.+.+.. +.. +..+....+
T Consensus 179 --~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (427)
T 3ppl_A 179 --PQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAF 255 (427)
T ss_dssp --TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEE
T ss_pred --CCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEE
Confidence 3789999885 799999999 888899999999 9999999999999985433321 111 133444567
Q ss_pred eeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHH
Q 012138 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI---RD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 289 ~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
.||||.+.+|+ |+|++++++++++.+.......+++.+++.+.++.++++.. .+ ...++.++++.+.+.+.|.+
T Consensus 256 ~S~SK~~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 334 (427)
T 3ppl_A 256 TSTSKITLAGA-GVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDS 334 (427)
T ss_dssp EESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhccCcCc-cEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999977898 99999999999988876666667788999888887777531 11 23444555555566666654
Q ss_pred HHhhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCCCCCHHHHHH
Q 012138 364 IQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 364 l~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~~~t~e~i~~ 432 (470)
.....+ .+....+ .|.++++.+... +..++.+.|.++||.+.|+ ..+++||+++.. ++++|++
T Consensus 335 ~l~~~~-~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~ 408 (427)
T 3ppl_A 335 RLAEYG-VAQWTVPAGGYFISLDVVPG----TASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEV 408 (427)
T ss_dssp HHGGGT-CCEECCCSBSSCEEEECSTT----CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHH
T ss_pred hcCCCC-ceEEeCCCccEEEEEECCcc----hHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHH
Confidence 222211 2333233 466666655432 4778899999999999882 368999998654 9999999
Q ss_pred HHHHHHHHHhccc
Q 012138 433 GSKALHDVLELDL 445 (470)
Q Consensus 433 ~~~~l~~~l~~~~ 445 (470)
++++|.++++ ++
T Consensus 409 ~~~~l~~~l~-~~ 420 (427)
T 3ppl_A 409 AMDGVATCVL-LA 420 (427)
T ss_dssp HHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-HH
Confidence 9999999998 65
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=247.16 Aligned_cols=340 Identities=14% Similarity=0.103 Sum_probs=228.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHH-HccccCCCCCCC-cHHHHHHHHhhhhCC--CeEEecCChhHHH--HHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAE-KLTLSSRAFYND-KFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETALK 150 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~~~~~-~~~~l~~~l~~~~~~--~~v~~~~sGteA~--~~al~ 150 (470)
++||..|.....+...+|.+.+++.+++. ........|... -..++.+.++++++. ++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 57888875431112255677777655421 111011123222 257788888887764 5899999999997 56666
Q ss_pred HHHHhchhcccCCC---C--------CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 151 LARKWGYVKKKFSI---D--------EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 151 ~~~~~~~~~~~~~~---g--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
.+.. + | .+.|++..|+|++........+..... .+...+ .+ |+++|+++++
T Consensus 114 ~l~~---------~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~----v~~~~~--g~---d~~~l~~~l~ 175 (422)
T 3d6k_A 114 SYTW---------GNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMIN----VPMTDE--GP---DMGVVRELVK 175 (422)
T ss_dssp HHHH---------CCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEE----EEEETT--EE---CHHHHHHHHT
T ss_pred HhcC---------cccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEe----cCCCCC--CC---CHHHHHHHHh
Confidence 6543 2 2 236889999998776544333221110 011011 12 8999999997
Q ss_pred hcCCCeEEEEEcc-ccCCCccccCChhhHHHHHHHHH-hcCcEEEEeccccC--CcccCCcc-cc-------ccCCCCcc
Q 012138 220 ESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQSG--LARSGRML-AS-------DWEEVRPD 287 (470)
Q Consensus 220 ~~~~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~-~~gillI~Dev~~g--~g~~G~~~-~~-------~~~~~~pd 287 (470)
+. ++++|++.| ++||||.++ +.+++++|.++|+ +||++||+||+|.. |+..+..+ .. +..+....
T Consensus 176 ~~--~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (422)
T 3d6k_A 176 DP--QVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWF 252 (422)
T ss_dssp ST--TEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEE
T ss_pred cC--CCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEE
Confidence 43 688888443 799999999 8999999999999 99999999999984 65544221 22 12344456
Q ss_pred eeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHH
Q 012138 288 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI---RD--EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 288 i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~ 362 (470)
+.||||..++|+ |+||+++++++++.+.......+++.++++++++.++|+.. .+ +.+++.++++.+++.+.|.
T Consensus 253 ~~S~SK~~~~Gl-riG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 331 (422)
T 3d6k_A 253 MSSTSKITHAGS-GVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILD 331 (422)
T ss_dssp EEESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcChhhhcCccc-ceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999977898 99999999999988876555567788999999888877531 11 2344455556666666666
Q ss_pred HHHhhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-C---------CCEEEEecCCCCCHHHHH
Q 012138 363 KIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-H---------DTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~---------~~~iR~~~~~~~t~e~i~ 431 (470)
+.....+ .+....+ .|.++++.+... +...+.+.|.++||.+.|+ . .+++||+++. .++++++
T Consensus 332 ~~l~~~~-~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~ 405 (422)
T 3d6k_A 332 SRLSEYG-VAKWTSPTGGYFISVDVVPG----TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELE 405 (422)
T ss_dssp HHHGGGT-CEEECCCSBSSCEEEEESTT----CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHH
T ss_pred HhcCcCC-ceEEeCCCcceEEEEECCCC----CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHH
Confidence 5332221 2333344 566666666432 4567888899999999883 1 4789999776 8999999
Q ss_pred HHHHHHHHHHhccc
Q 012138 432 EGSKALHDVLELDL 445 (470)
Q Consensus 432 ~~~~~l~~~l~~~~ 445 (470)
+++++|+++++ ++
T Consensus 406 ~~~~~l~~~l~-~~ 418 (422)
T 3d6k_A 406 VAMDGFATCVL-MA 418 (422)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHH-HH
Confidence 99999999987 65
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=242.06 Aligned_cols=317 Identities=15% Similarity=0.160 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.+|++.+++.+++.. +... ...+...+++++++++++.+ .+++++||++|++.+++.+.. +|+ .
T Consensus 34 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~---------~gd-~ 100 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HMQK-EMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE---------PGD-S 100 (393)
T ss_dssp CCHHHHHHTTCCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhcccccC--cccH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC---------CCC-E
Confidence 578888887664311 1110 12345678889999988754 589999999999999997743 455 6
Q ss_pred EEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 169 IVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 169 ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
|++..++|++.. .......+..... .+...+ .. .|+++|+++++++ ++++|++++++||+|.+.| +
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~-~~---~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l 167 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARVHQ---MIKKPG-EH---YTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----L 167 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEE---EECCTT-CC---CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred EEEEeCCchhHHHHHHHHHcCCceEE---EeCCCC-CC---CCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----H
Confidence 666677776532 2222222211110 011011 11 2899999999874 6788888888999999997 8
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCc-----
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH----- 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~----- 320 (470)
++|.++|++||++||+||+|+ ++ +..+..+.++ +|++ +++|+++|+. ++|++++++++++.+.....
T Consensus 168 ~~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~ 241 (393)
T 3kgw_A 168 DGFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAPP-GISLISFNDKAKYKVYSRKTKPVSF 241 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCCS-SCEEEEECHHHHHHHHTCSSCCSCS
T ss_pred HHHHHHHHHcCCEEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCCC-ceeEEEECHHHHHHHhccCCCCCce
Confidence 999999999999999999997 21 2222233344 3555 5559998876 89999999999887753211
Q ss_pred ------------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE-E-Eec
Q 012138 321 ------------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK-E-VRG 377 (470)
Q Consensus 321 ------------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~-~~~ 377 (470)
...++.++.+++++.++++.+.+ +++.++++++++++.+.|++++.. ... . ...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~ 318 (393)
T 3kgw_A 242 YTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLK---FFVKDPEIR 318 (393)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BSSSSGGGB
T ss_pred eecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCe---eccCChhhc
Confidence 11345688888888888887665 567888888999999998886221 110 0 011
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.+.+.++.+... .+..++.+.|+++ ||.+.++ .++++|+++ ++.+|++++++++++|+++++ ++.+
T Consensus 319 ~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~-~~~~ 390 (393)
T 3kgw_A 319 LPTITTVTVPAG---YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQ-HCPK 390 (393)
T ss_dssp CSSEEEEECCTT---BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH-HSCB
T ss_pred CCeEEEEeCCCC---CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHH-hhhh
Confidence 244555655432 3678899999998 9999875 368999997 777799999999999999999 7653
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=236.63 Aligned_cols=332 Identities=18% Similarity=0.136 Sum_probs=230.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc-cccCC--C---CCCCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-TLSSR--A---FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~---~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
+|..|+|+.+. ++.+|.+.+++.++++.. ..... . ...+...++++++++++|. +++++++||+++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46788887543 357899999999998753 11110 0 1135568899999999975 489999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++.+++.++.+.... .+|+++| +..+.+|+....... +.... ..+ ..+..++. +++|++++++
T Consensus 101 l~~al~~~~~~~~~~---~~gd~vi-i~~~~~~~~~~~~~~~~~~~~--~~g-----~~~~~v~~--~~~l~~~i~~--- 164 (416)
T 1qz9_A 101 LFKVLSAALRVQATR---SPERRVI-VTETSNFPTDLYIAEGLADML--QQG-----YTLRLVDS--PEELPQAIDQ--- 164 (416)
T ss_dssp HHHHHHHHHHHHHHH---STTCCEE-EEETTSCHHHHHHHHHHHHHH--CSS-----CEEEEESS--GGGHHHHCST---
T ss_pred HHHHHHhhccccccc---CCCCcEE-EEcCCCCCchHHHHHHHHHHh--cCC-----ceEEEeCc--HHHHHHHhCC---
Confidence 999998775310000 0466444 455555665443221 10000 000 11345544 7888888865
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIP 301 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ 301 (470)
++++|++++++||+|.+.| +++|.++|++||++||+||+|+ +|... +....+ .+|+++ ++|.+.+|. +
T Consensus 165 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g~-~ 234 (416)
T 1qz9_A 165 DTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGGP-G 234 (416)
T ss_dssp TEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCCT-T
T ss_pred CceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCCC-C
Confidence 7899998888999999997 9999999999999999999997 33221 112222 357664 569998887 8
Q ss_pred e-eEEEecHHHHhhcCcCCcc-----------------------CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 012138 302 V-SAVLADKEVMLCIQPGEHG-----------------------STFGGNPLASAVAIASLDVIRD---EKLAERSAHLG 354 (470)
Q Consensus 302 i-g~v~~~~~~~~~~~~~~~~-----------------------~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~ 354 (470)
+ |++++++++++.+.+...+ ...+.++.+++++.++++.+.+ +++.+++++++
T Consensus 235 ~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 314 (416)
T 1qz9_A 235 SQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALT 314 (416)
T ss_dssp CCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8 9999999987776653211 1234688888888889988764 45788888899
Q ss_pred HHHHHHHHHHHhhCCCceEEEec-----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecC-CCCCHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRG-----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP-LSISSN 428 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~-~~~t~e 428 (470)
+++.+.|+++.... .+....+ .+.++++.+. +..++.+.|.++||.+.....+++|++++ +.+|++
T Consensus 315 ~~l~~~L~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~ 386 (416)
T 1qz9_A 315 DLFIELVEQRCAAH--ELTLVTPREHAKRGSHVSFEHP------EGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFT 386 (416)
T ss_dssp HHHHHHHHHHHTTS--CCEECSCSSGGGBCSEEEEECT------THHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHH
T ss_pred HHHHHHHHhhccCC--CeEEeCCCCHHHcCCEEEEecC------CHHHHHHHHHhCCcEeccCCCCeEEEeCcccCCCHH
Confidence 99999998752100 1222222 3566666543 36789999999999987656789999987 588999
Q ss_pred HHHHHHHHHHHHHhccc
Q 012138 429 ELQEGSKALHDVLELDL 445 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~ 445 (470)
++++++++|+++++ +.
T Consensus 387 ~i~~~~~~l~~~~~-~~ 402 (416)
T 1qz9_A 387 EVWDAVQILGEILD-RK 402 (416)
T ss_dssp HHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHh-cc
Confidence 99999999999998 64
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-28 Score=239.21 Aligned_cols=323 Identities=14% Similarity=0.116 Sum_probs=226.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALK 150 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~ 150 (470)
++.|+|..+. ++.+|++.+++.+++.. +++. ...+.+.++++++++++|.+ ++++|+||++|++.+++
T Consensus 33 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 33 PSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIA 103 (393)
T ss_dssp CCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred ccceeccCCC------CCCCHHHHHHHhccccc--ccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHH
Confidence 3567764332 34789999988776542 1111 12356788999999988754 79999999999999999
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccc--cccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHG--RTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
.+.. +|+ .|++..++|++ ..... ...+..... .+...+ . ..|+++|++++++. ++++|
T Consensus 104 ~~~~---------~gd-~Vl~~~~~~~~~~~~~~~-~~~g~~~~~---v~~~~~-~---~~d~~~l~~~l~~~--~~~~v 163 (393)
T 1vjo_A 104 NAVE---------PGD-VVLIGVAGYFGNRLVDMA-GRYGADVRT---ISKPWG-E---VFSLEELRTALETH--RPAIL 163 (393)
T ss_dssp HHCC---------TTC-EEEEEESSHHHHHHHHHH-HHTTCEEEE---EECCTT-C---CCCHHHHHHHHHHH--CCSEE
T ss_pred hccC---------CCC-EEEEEcCChhHHHHHHHH-HHcCCceEE---EecCCC-C---CCCHHHHHHHHhhC--CceEE
Confidence 8743 454 78889999987 22221 111211110 011000 0 13899999999864 56788
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcceeEEE
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVL 306 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~ 306 (470)
++++++||+|.+.| +++|.++|++||++||+||+|+ +|... +.. ....+|+++ ++|+++++. ++|+++
T Consensus 164 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~~~--~~~~~di~~~s~sK~l~~~~-~~G~l~ 233 (393)
T 1vjo_A 164 ALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP--IFL--DAWGVDLAYSCSQKGLGCSP-GASPFT 233 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC--CCT--TTTTCSEEECCSSSTTCSCS-SCEEEE
T ss_pred EEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC--Ccc--cccCccEEEEcCcccccCCC-ceEEEE
Confidence 88888999999997 8999999999999999999998 54321 222 233567764 559999877 999999
Q ss_pred ecHHHHhhcCc-------CCc------------cCCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 012138 307 ADKEVMLCIQP-------GEH------------GSTF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 307 ~~~~~~~~~~~-------~~~------------~~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 363 (470)
+++++++.+.. ... ...+ +.++++++++.++++.+.+ +++.++++++++++.+.|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 313 (393)
T 1vjo_A 234 MSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED 313 (393)
T ss_dssp ECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877632 110 2234 6788999999999988654 46778888899999999987
Q ss_pred HHhhCCCceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC----CCEEEEec-CCCCCHHHHHHHHH
Q 012138 364 IQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH----DTIVRLTP-PLSISSNELQEGSK 435 (470)
Q Consensus 364 l~~~~p~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~~-~~~~t~e~i~~~~~ 435 (470)
++ +. ... ..+ .+.++.+.++.. .+..++++.|.++ ||.+.++. ++++|+++ ++..++++++++++
T Consensus 314 ~g--~~-~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~ 386 (393)
T 1vjo_A 314 IG--LS-LHV-EKEYRLPTLTTVCIPDG---VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIP 386 (393)
T ss_dssp TT--CC-BSS-CGGGBCSSEEEEECCTT---CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred cC--Cc-ccC-CccccCCcEEEEEcCCC---CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHH
Confidence 52 21 111 111 234556655332 2678899999998 99998763 68999994 56678889999999
Q ss_pred HHHHHHh
Q 012138 436 ALHDVLE 442 (470)
Q Consensus 436 ~l~~~l~ 442 (470)
+|+++++
T Consensus 387 ~l~~~l~ 393 (393)
T 1vjo_A 387 ALEQVLR 393 (393)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998864
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=233.72 Aligned_cols=328 Identities=13% Similarity=0.109 Sum_probs=226.1
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~ 152 (470)
++||..|. ++ .+|+|.+++.+++ .+....+..+...+++++++++++. +++++++||++|++.+++.+
T Consensus 5 ~~~~~~gp----~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 5 YLLLTPGP----LT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CEECSSSS----CC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred cccccCCC----cC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 56777772 22 7899999987753 2211111126678899999999873 26999999999999999977
Q ss_pred HHhchhcccCCCCCcEEEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 231 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~e 231 (470)
.. +|+ .|++.++.||+... ......+..... .+... . .+.|+++|+++++++ .++++|++.
T Consensus 77 ~~---------~gd-~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~-~---~~~d~~~l~~~l~~~-~~~~~v~~~ 138 (366)
T 1m32_A 77 LG---------PQD-KVLIVSNGAYGARMVEMAGLMGIAHHA---YDCGE-V---ARPDVQAIDAILNAD-PTISHIAMV 138 (366)
T ss_dssp CC---------TTC-CEEEEESSHHHHHHHHHHHHHTCCEEE---EECCT-T---SCCCHHHHHHHHHHC-TTCCEEEEE
T ss_pred cC---------CCC-eEEEEeCCCccHHHHHHHHHhCCceEE---EeCCC-C---CCCCHHHHHHHHhcC-CCeEEEEEe
Confidence 53 455 55666666676532 121111211110 01100 0 123899999999863 246677655
Q ss_pred cccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecH
Q 012138 232 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 232 pi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~ 309 (470)
.++||+|.+.| +++|.++|++||++||+||+|+ ++... +....+ .+|++ +++|+++++. ++|++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~~--~~di~~~s~~K~~~~~~-g~G~~~~~~ 208 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAAL--HIDYLISSANKCIQGVP-GFAFVIARE 208 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTTT--TCSEEEEESSSTTCCCS-SEEEEEEEH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccccc--CccEEEecCcccccCCC-ceEEEEECH
Confidence 55999999997 9999999999999999999997 32221 122222 35665 6789998776 889999999
Q ss_pred HHHhhcCcCCc------------------cCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 310 EVMLCIQPGEH------------------GSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 310 ~~~~~~~~~~~------------------~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++++.+..... ...++.++.+++++.++++.+.+ +.+.++++++++++.+.|++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-- 286 (366)
T 1m32_A 209 QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALG-- 286 (366)
T ss_dssp HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCC--
Confidence 99887764311 11357888999889899987754 3477888888889988888752
Q ss_pred CCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 012138 368 FPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLEL 443 (470)
Q Consensus 368 ~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 443 (470)
+. ..... ...|.++++.+.... +.+..++.+.|.++||.+.++ ..+++|++++..++++++++++++|+++++
T Consensus 287 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~- 363 (366)
T 1m32_A 287 FN-TLLDDELHSPIITAFYSPEDP-QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY- 363 (366)
T ss_dssp CC-BSSCGGGBCSSEEEEECCCCT-TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT-
T ss_pred Ce-eccCchhcCceEEEEEcCccC-CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHH-
Confidence 11 11110 123557777665300 126788999999999999876 468999999988999999999999999987
Q ss_pred cc
Q 012138 444 DL 445 (470)
Q Consensus 444 ~~ 445 (470)
++
T Consensus 364 ~~ 365 (366)
T 1m32_A 364 WT 365 (366)
T ss_dssp TC
T ss_pred hc
Confidence 64
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=240.79 Aligned_cols=328 Identities=14% Similarity=0.152 Sum_probs=228.9
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHH--HccccCCC--C-----CCCcHHHHHHHHhhhhCCC--eEEecCC
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE--KLTLSSRA--F-----YNDKFPVFAERLTSMFGYD--MVLPMNT 140 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~--~-----~~~~~~~l~~~l~~~~~~~--~v~~~~s 140 (470)
.++.-|+|+.++ ++.+|++.+++.+++. .....+.. + ..+...+++++++++++.+ ++++++|
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 93 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 355678887654 3478999999998876 32111111 1 1234578999999998865 8999999
Q ss_pred hhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc--cCCcccccCCCCCCCCeeeecCC-----CHHH
Q 012138 141 GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM--SCDNEAIRGFGPLLPGHLKVDFG-----DITA 213 (470)
Q Consensus 141 GteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 213 (470)
|++|++.+++++..+ +.+ +| +.|++..++|++.......+ .+.. +..++.+ |+++
T Consensus 94 gt~a~~~a~~~l~~~-~~~----~g-d~Vl~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~ 155 (423)
T 3lvm_A 94 ATESDNLAIKGAANF-YQK----KG-KHIITSKTEHKAVLDTCRQLEREGFE------------VTYLAPQRNGIIDLKE 155 (423)
T ss_dssp HHHHHHHHHHHHHHH-HTT----TC-CEEEEETTSCHHHHHHHHHHHHTTCE------------EEEECCCTTSCCCHHH
T ss_pred hHHHHHHHHHHHHHh-hcc----CC-CEEEECCccchHHHHHHHHHHHcCCE------------EEEeccCCCCccCHHH
Confidence 999999999977642 111 24 48888999987654333222 1111 1222222 8999
Q ss_pred HHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--c
Q 012138 214 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--L 291 (470)
Q Consensus 214 Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~ 291 (470)
|++++++ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+. +. . ..+.....+|+++ +
T Consensus 156 l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~---~-~~~~~~~~~di~~~s~ 223 (423)
T 3lvm_A 156 LEAAMRD---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GK---L-PIDLSQLKVDLMSFSG 223 (423)
T ss_dssp HHHHCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TT---S-CCCTTTSCCSEEEEES
T ss_pred HHHhcCC---CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CC---C-CcChhhcCCCEEEech
Confidence 9999876 7899999988999999997 99999999999999999999973 11 1 1222233467765 5
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCc-------cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~ 362 (470)
+|.+ |+. ++|++++++++++.+..... ....+.++.+++++.++++.+.+ +++.++++++++++.+.|+
T Consensus 224 sK~~-g~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~ 301 (423)
T 3lvm_A 224 HKIY-GPK-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 301 (423)
T ss_dssp TTTT-SCS-SCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhc-CCC-CeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5954 444 68999999887777765432 22345678888888888887765 5677777777777777775
Q ss_pred HHHhhCCCceEEEecc----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CC
Q 012138 363 KIQQQFPNYVKEVRGR----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DT 415 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~ 415 (470)
++ | .+...... +.++.+.+.. .+..++.+.|.+ |.+.++. .+
T Consensus 302 ~~----~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 370 (423)
T 3lvm_A 302 DI----E-EVYLNGDLEHGAPNILNVSFNY----VEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHS 370 (423)
T ss_dssp TS----T-TEEEESCSTTBCTTEEEEEETT----SCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHT
T ss_pred cC----C-CEEEeCCccccCCCeEEEEeCC----CCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCc
Confidence 43 2 34333332 3455555532 257788888876 7776642 38
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
++||+++..++++++++++++|+++++ ++++..
T Consensus 371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~-~~~~~~ 403 (423)
T 3lvm_A 371 SIRFSLGRFTTEEEIDYTIELVRKSIG-RLRDLS 403 (423)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHH-HHHTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHH-HhhccC
Confidence 999999999999999999999999998 876543
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=236.16 Aligned_cols=315 Identities=15% Similarity=0.136 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|++.+++.+++... ......+...+++++++++++. +++++++||++|++ +++.+.. +|+
T Consensus 13 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~---------~gd- 78 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF---TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK---------PND- 78 (384)
T ss_dssp CCHHHHHHTTCCSCCT---TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC---------TTC-
T ss_pred CCHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC---------CCC-
Confidence 5788888887665321 1111234567889999998875 45999999999999 8876532 454
Q ss_pred EEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 168 IIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.|++..++||+...... ...+.... +.+...+ ..+ |+++|+++++++ ++++|++++++||+|.+.|
T Consensus 79 ~vi~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---- 145 (384)
T 3zrp_A 79 KILVVSNGVFGDRWEQIFKRYPVNVK---VLRPSPG-DYV---KPGEVEEEVRKS--EYKLVALTHVETSTGVREP---- 145 (384)
T ss_dssp EEEEECSSHHHHHHHHHHTTSSCEEE---EECCSTT-CCC---CHHHHHHHHHHS--CEEEEEEESEETTTTEECC----
T ss_pred EEEEecCCcchHHHHHHHHHcCCcEE---EecCCCC-CCC---CHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----
Confidence 78888899987543222 12221111 1111110 111 899999999874 6899998888999999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhc-CcC-----
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCI-QPG----- 318 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~-~~~----- 318 (470)
+++|.++|++||++||+||+|+.. .. ......+ .+|++ +++|+++|+. ++|++++++++++.+ .+.
T Consensus 146 l~~i~~l~~~~~~~li~D~a~~~~-~~--~~~~~~~--~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~ 219 (384)
T 3zrp_A 146 VKDVINKIRKYVELIVVDGVSSVG-AE--EVKAEEW--NVDVYLTASQKALGSAA-GLGLLLLSPKALSILDSQNSIAGY 219 (384)
T ss_dssp HHHHHHHHGGGEEEEEEECTTTTT-TS--CCCTTTT--TCSEEEEETTSTTCCCS-SEEEEEECHHHHHHHHHCCCSCCS
T ss_pred HHHHHHHHHhcCCEEEEECccccc-Cc--ccccccc--CCCEEEecCcccccCCC-ceEEEEECHHHHHHhcCCCCCCcc
Confidence 999999999999999999999722 11 1112222 34665 5669998876 899999999987776 110
Q ss_pred ------------C----ccCCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE--e
Q 012138 319 ------------E----HGSTF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--R 376 (470)
Q Consensus 319 ------------~----~~~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~--~ 376 (470)
. ....+ +.+...++++.++++.+.+ +.+.++.+++++++.+.|++++.. ..... .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~ 296 (384)
T 3zrp_A 220 YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLE---IVARRPES 296 (384)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BSCSSGGG
T ss_pred cccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCe---EccCcccc
Confidence 0 22333 4677778877788887654 467788888899999988876211 11110 1
Q ss_pred ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-C--CEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 377 GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-D--TIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
..+.++++.+.. . +..++.+.|.++||.+.++. . +++|++++..+|++++++++++|+++++ ++..
T Consensus 297 ~~~~~~~~~~~~-~---~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~-~~~~ 365 (384)
T 3zrp_A 297 YSNTVTGVILKV-A---DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLR-KLGE 365 (384)
T ss_dssp BCSSEEEEECSS-S---CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHH-HHTC
T ss_pred cCccEEEEECCC-C---CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHH-HcCC
Confidence 135566666554 2 67889999999999998764 1 7899999888999999999999999999 7653
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=228.52 Aligned_cols=314 Identities=14% Similarity=0.122 Sum_probs=220.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALK 150 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~ 150 (470)
+.+++|||.++.. +++ .+|.+.+++.+.++.... |..+...++++.++++++. +++++|+|+++++..+++
T Consensus 14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARINR----YPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGTTS----CCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhhcc----CCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 4567899998854 344 789999999988765432 3345678899999999875 579999999999999988
Q ss_pred HHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 151 LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 151 ~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
.+ . |+ .|++..++|++........+. .... .+...+ ..+ |+++|+++ .+++++++
T Consensus 87 ~~-~----------gd-~vl~~~p~~~~~~~~~~~~g~-~~~~---v~~~~~-~~~---d~~~l~~~-----~~~~~v~i 141 (337)
T 3p1t_A 87 EF-S----------SM-RFVTAWPGFDGYRARIAVSGL-RHFE---IGLTDD-LLL---DPNDLAQV-----SRDDCVVL 141 (337)
T ss_dssp HS-T----------TS-EEEEESSSCSHHHHHHTTSCC-EEEE---ECBCTT-SSB---CHHHHTTC-----CTTEEEEE
T ss_pred hc-C----------CC-eEEEeCCCcHHHHHHHHHcCC-EEEE---ecCCCC-CCC---CHHHHHhh-----cCCCEEEE
Confidence 65 2 55 788899998765443322221 1110 010000 111 78888765 15677776
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecH
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
..++||+|.++| ++++.++|+++++ +|+||+|.+|+..+... ....+....+.|+||.++ +|+ |+|++++++
T Consensus 142 ~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~ 214 (337)
T 3p1t_A 142 ANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGL-RLGALFGPS 214 (337)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTT-CCEEEECCH
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcch-heEEEEeCH
Confidence 666999999997 8888999999997 55699999876544321 121222223459999998 898 999999999
Q ss_pred HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEecc
Q 012138 310 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 388 (470)
Q Consensus 310 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~ 388 (470)
++++.+... ...++.++++++++.++|+.... +...++..++++++.+.|++++ +....+.|.++++...
T Consensus 215 ~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~- 285 (337)
T 3p1t_A 215 ELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG------YRVASSEANFVLVENA- 285 (337)
T ss_dssp HHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT------CCBCCCSSSEEEEECT-
T ss_pred HHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc------CEECCCCCeEEEEEcC-
Confidence 999888643 34567888888888877764321 3344555666677777776642 2334567788777543
Q ss_pred CCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 389 TALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..++.+.|.++||.+.++. ++++|+++. +++++++++++|+++++
T Consensus 286 -----~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 286 -----AGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----TTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -----CHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 23567888999999998764 589999943 79999999999998765
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=237.02 Aligned_cols=330 Identities=12% Similarity=0.026 Sum_probs=216.9
Q ss_pred eEEeccCCcccccCCCCC--HHHHHHHHH-HHHHccc-c--CCCCCCCcHHHHHHHHhhhhC----CC--eEEecCChhH
Q 012138 76 KYLDFLSAYSAVNQGHCH--PKIMKALQE-QAEKLTL-S--SRAFYNDKFPVFAERLTSMFG----YD--MVLPMNTGAE 143 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~~-~--~~~~~~~~~~~l~~~l~~~~~----~~--~v~~~~sGte 143 (470)
.++||..|....+.++.+ |.+.+++.+ .++.... . ......++++++++++....+ .+ ++++|+||++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~ 106 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG 106 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence 478888886444555555 899999999 8764221 1 111223345555555544332 46 8999999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC----C---CHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----G---DITALEK 216 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~Le~ 216 (470)
|++.+++++.... +|+ .|++..++|++........+.. +..+++ + |+++|++
T Consensus 107 a~~~~~~~~~~~~-------~gd-~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 165 (397)
T 3fsl_A 107 ALKVGADFLKRYF-------PES-GVWVSDPTWENHVAIFAGAGFE-------------VSTYPWYDEATNGVRFNDLLA 165 (397)
T ss_dssp HHHHHHHHHHHHC-------TTC-CEEEESSCCHHHHHHHHHTTCC-------------EEEECCEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCC-eEEEeCCCchhHHHHHHHcCCc-------------eEEEeeeeccCCcCcHHHHHH
Confidence 9999977543211 344 7888999998765444333222 123332 2 8999999
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--Ccccc----ccCCCCcceee
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLAS----DWEEVRPDMVI 290 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~----~~~~~~pdi~s 290 (470)
+++++.+++++++++.++||+|.++ +.+.+++|.++|++||++||+||+|++|.+.+ ..... +..+....+.|
T Consensus 166 ~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 244 (397)
T 3fsl_A 166 TLKTLQAGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNS 244 (397)
T ss_dssp HHTTCCTTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEec
Confidence 9986545778888777799999999 88999999999999999999999999876552 11111 12222234558
Q ss_pred cccccc-CCCcceeEEEe---cHHHHhhcCcC----CccCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHH
Q 012138 291 LGKALG-GGVIPVSAVLA---DKEVMLCIQPG----EHGSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHLG 354 (470)
Q Consensus 291 ~sK~l~-gG~~~ig~v~~---~~~~~~~~~~~----~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~ 354 (470)
|||.++ +|+ |+|++++ ++++++.+... ....+.+.+.++++++.+.++.. .+ +++++++++++
T Consensus 245 ~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 245 FSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp CTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 898 9999974 45555433211 11233445667776666555421 11 45677778888
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.|+++.... .+....+.+.++.| +.. +...+.+.|.++||.+.|++ ||+++ .+++++|++++
T Consensus 324 ~~l~~~L~~~~~~~--~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gi~v~~g~----Ris~~-~~~~~~i~~~~ 390 (397)
T 3fsl_A 324 QELVKVLSTEMPER--NFDYLLNQRGMFSY-TGL-----SAAQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVA 390 (397)
T ss_dssp HHHHHHHHHHCTTS--CCTHHHHCCSSEEE-CCC-----CHHHHHHHHHTTCEECCTTC----EEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhcCCCC--CceeecCCceEEEe-cCC-----CHHHHHHHHHhCCEEECCCC----eEEEE-ecCHhhHHHHH
Confidence 88888887763210 12222344555555 222 34556777788899999875 89875 34778899999
Q ss_pred HHHHHHH
Q 012138 435 KALHDVL 441 (470)
Q Consensus 435 ~~l~~~l 441 (470)
++|++++
T Consensus 391 ~~l~~~l 397 (397)
T 3fsl_A 391 KAFAAVM 397 (397)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9998864
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=234.59 Aligned_cols=323 Identities=13% Similarity=0.061 Sum_probs=221.0
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CC-----CCCcHHHHHHHHhhhhCCC--eEEecCChhHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AF-----YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGV 145 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~ 145 (470)
+..|+|+.++. +.+|++.+++.++++.....+. .+ ..+...+++++++++++.+ .+++++||++++
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 46788876552 3689999999999986432211 12 1345678899999998864 799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc---cCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM---SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
+.+++.+.+. . .+|+ .|++..++|++.......+ .+.... +.+..++...+ |+++|++++++
T Consensus 100 ~~~~~~l~~~--~----~~gd-~vi~~~~~~~~~~~~~~~~~~~~g~~v~---~v~~~~~~~~~---d~~~l~~~l~~-- 164 (406)
T 3cai_A 100 SLLAEASSSR--A----GLGY-EVIVSRLDDEANIAPWLRAAHRYGAKVK---WAEVDIETGEL---PTWQWESLISK-- 164 (406)
T ss_dssp HHHHHHTGGG--G----BTTC-EEEEETTSCGGGTHHHHHHHHHHBCEEE---EECCCTTTCCC---CGGGHHHHCCT--
T ss_pred HHHHHHHhhc--c----CCCC-EEEEcCCccHHHHHHHHHHHHhcCCeEE---EEecCcccCCc---CHHHHHHHhCC--
Confidence 9988865210 0 1354 7888888877654332221 121111 11111011112 88999998875
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCc
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVI 300 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~ 300 (470)
++++|++++++||+|.+.| +++|.++|++||++||+||+|+ +|.. .+....++ +|++ +++|.+++
T Consensus 165 -~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~~--~d~~~~s~~K~~g~--- 231 (406)
T 3cai_A 165 -STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYR--LLDIRETD--ADVVTVNAHAWGGP--- 231 (406)
T ss_dssp -TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTC--CCCHHHHC--CSEEEEEGGGGTSC---
T ss_pred -CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--CCCchhcC--CCEEEeehhhhcCC---
Confidence 7899998888999999997 9999999999999999999997 2211 12222333 4654 67897653
Q ss_pred cee-EEEecHHHHhhcCcCCc---------cCCCCCCHHHHHHHHHHHHHHhh-----------------hhHHHHHHHH
Q 012138 301 PVS-AVLADKEVMLCIQPGEH---------GSTFGGNPLASAVAIASLDVIRD-----------------EKLAERSAHL 353 (470)
Q Consensus 301 ~ig-~v~~~~~~~~~~~~~~~---------~~t~~~~~~~~aaa~a~l~~~~~-----------------~~~~~~~~~~ 353 (470)
++| ++++++++++.+.+... ....+.++.+++++.++++.+.+ +.+.++.+++
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (406)
T 3cai_A 232 PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV 311 (406)
T ss_dssp SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHH
Confidence 488 99999999888765432 11334678888787788887654 3455666677
Q ss_pred HHHHHHHHHHHHhhCCCceEEEec---cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------------CCEE
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRG---RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------------DTIV 417 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------~~~i 417 (470)
++++.+.|+++ | .+....+ .+.++.+.+.. .+..++.+.|.++||.+.++. .+++
T Consensus 312 ~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~i 382 (406)
T 3cai_A 312 FDYLMVSLRSL----P-LVMLIGRPEAQIPVVSFAVHK----VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAV 382 (406)
T ss_dssp HHHHHHHHHTC----T-TEEECCCCSSBCSEEEEEETT----BCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCE
T ss_pred HHHHHHHHhcC----C-CeEEcCCccccCCEEEEEECC----cCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeE
Confidence 77777777653 2 2332222 35566666542 257789999999999998753 4789
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 012138 418 RLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 418 R~~~~~~~t~e~i~~~~~~l~~ 439 (470)
|++++..++++++++++++|++
T Consensus 383 Ris~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 383 TVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EEECCTTCCHHHHHHHHHHHHT
T ss_pred EEEeecCCCHHHHHHHHHHHHH
Confidence 9999988999999999999875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=236.66 Aligned_cols=331 Identities=13% Similarity=0.068 Sum_probs=226.0
Q ss_pred EEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC-CeEEecCChhHHHH
Q 012138 68 SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY-DMVLPMNTGAEGVE 146 (470)
Q Consensus 68 ~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~v~~~~sGteA~~ 146 (470)
.++|.+++.+.++...+...+.+|..++..+. .++++++++++++. +.++|++||++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------------------~~~~~~~l~~~~~~~~~v~~~~sgt~a~~ 65 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV-------------------MNDLLSNLKTVYNAEAAVIIPGSGTYGME 65 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH-------------------HHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH-------------------HHHHHHHHHHHhCCCCEEEEcCChhHHHH
Confidence 46788888888887666555667776655532 24555667777765 45888999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCcccccCCCCCCC---C--eeeecCCCHHHHHHHHHh
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPLLP---G--HLKVDFGDITALEKIFKE 220 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~---~--~~~~~~~d~~~Le~~l~~ 220 (470)
++++.+ . +|+ .||+..++||+.....+.. .+.. ....+.+... + ...+...|+++|++++++
T Consensus 66 ~~~~~~-~---------~gd-~vi~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~ 133 (379)
T 3ke3_A 66 AVARQL-T---------IDE-DCLIIRNGWFSYRWTQILEKGKFA-KSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE 133 (379)
T ss_dssp HHHHHH-C---------TTC-EEEEEECSHHHHHHHHHHHHHCCS-SEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH
T ss_pred HHHHhC-C---------CCC-eEEEEeCCchhHHHHHHHHHhCCC-CceEEEeccccccccccCCCCCCCHHHHHHHHhh
Confidence 988643 2 355 7888888888865433221 1100 0000000000 0 000112489999999965
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCc
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~ 300 (470)
. ++++|++..++|++|.+. +.+++++|.++|++||+++|+|++|+ | +..+..+.+++++.+.+++|+++++.
T Consensus 134 ~--~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~~- 205 (379)
T 3ke3_A 134 D--KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSSTP- 205 (379)
T ss_dssp H--TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSCC-
T ss_pred c--CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCCC-
Confidence 3 677888888899999999 78899999999999999999999997 3 33444555676555667779998876
Q ss_pred ceeEEEecHHHHhhcCcCC----------------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 012138 301 PVSAVLADKEVMLCIQPGE----------------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGE 355 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~----------------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~ 355 (470)
++|++++++++++.+.+.. ...+++.++..++++.++++.+.+ +++.++.+++++
T Consensus 206 g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~ 285 (379)
T 3ke3_A 206 CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGN 285 (379)
T ss_dssp CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 8999999999887765311 011236788888888899998776 467788888999
Q ss_pred HHHHHHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC---------CCEEEEecCCCC
Q 012138 356 ELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---------DTIVRLTPPLSI 425 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------~~~iR~~~~~~~ 425 (470)
++++.|++++-. .+.... ..+.+..+.++ . ....+.+.|.++||.+.++. .+++|++++..+
T Consensus 286 ~l~~~l~~~g~~---~~~~~~~~~~~i~~~~~~--~---~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~ 357 (379)
T 3ke3_A 286 RVRKVLTDKGIE---SVAAEGFEAPGVVVSYTE--R---DDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLD 357 (379)
T ss_dssp HHHHHHHHTTCC---BSBCTTCBCSSEEEEECS--C---HHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHH
T ss_pred HHHHHHHHcCCE---ecCCccccCceEEEEccC--C---cchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCC
Confidence 999998886322 111100 12223333222 1 22234678889999987763 689999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|++||++++++|+++++ ++.
T Consensus 358 t~~di~~~~~~l~~~l~-~~~ 377 (379)
T 3ke3_A 358 KLTDIDGTVERFEKALD-EVL 377 (379)
T ss_dssp HHTCHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999998 653
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=240.50 Aligned_cols=339 Identities=12% Similarity=0.075 Sum_probs=219.7
Q ss_pred CCeEEeccCCcccccCC--CCCHHHHHHHHH-HHHHccccCCCC-CCCcHHHHHHHHhhhh----C----CCeEEe--cC
Q 012138 74 GNKYLDFLSAYSAVNQG--HCHPKIMKALQE-QAEKLTLSSRAF-YNDKFPVFAERLTSMF----G----YDMVLP--MN 139 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG--~~~p~v~~a~~~-~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~----~~~v~~--~~ 139 (470)
|+.++||..+....+.+ ..+|.+.+++.+ .++.... ..| ......++.+.+++++ + .++|++ |+
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~ 105 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYN--HEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSL 105 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccc--cCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEecc
Confidence 45678888875422222 256889999988 7652111 111 1122344444444443 2 578999 99
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCeeeecCCCHHHHHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDFGDITALEKIF 218 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~Le~~l 218 (470)
||++|++.+++++.... +|+ .|++..++|++........+..... .+. .++...+ |+++|++++
T Consensus 106 g~~~a~~~~~~~~~~~~-------~gd-~Vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~~---d~~~l~~~l 170 (412)
T 1yaa_A 106 SGTGALHISAKFFSKFF-------PDK-LVYLSKPTWANHMAIFENQGLKTAT----YPYWANETKSL---DLNGFLNAI 170 (412)
T ss_dssp HHHHHHHHHHHHHHHHC-------TTC-CEEEEESCCTTHHHHHHTTTCCEEE----EECEETTTTEE---CHHHHHHHH
T ss_pred chHhHHHHHHHHHHHhC-------CCC-EEEEeCCCCccHHHHHHHcCceEEE----EeeecCCCCcc---CHHHHHHHH
Confidence 99999999976554321 354 7888899998865544333221111 000 0001122 899999999
Q ss_pred HhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC---Ccccc-ccCCCCc----c--e
Q 012138 219 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG---RMLAS-DWEEVRP----D--M 288 (470)
Q Consensus 219 ~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G---~~~~~-~~~~~~p----d--i 288 (470)
++++..++++++..++||||.++ +.+++++|.++|++||++||+||+|.+|++.+ ..... +.....+ + +
T Consensus 171 ~~~~~~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 249 (412)
T 1yaa_A 171 QKAPEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVC 249 (412)
T ss_dssp HHSCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEE
Confidence 86432355666455699999999 89999999999999999999999999886654 22112 1111122 2 4
Q ss_pred eeccccccC-CCcceeEEE--e-----cHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--------hhhHHH
Q 012138 289 VILGKALGG-GVIPVSAVL--A-----DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--------DEKLAE 348 (470)
Q Consensus 289 ~s~sK~l~g-G~~~ig~v~--~-----~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~~~~~ 348 (470)
.+|||.+++ |+ |+|+++ + +++ +++.+.......+.+.++++++++.++|+... .+++++
T Consensus 250 ~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 250 QSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 489999996 98 999998 7 666 77766543333344568888888888887542 145677
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHH
Q 012138 349 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSN 428 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e 428 (470)
+++++++++.+.|+++... ..+....+.+.++.| +.. +...+...+.++||.+.+ ++||+++. .+++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~ 395 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTP--GNWDHIVNQCGMFSF-TGL-----TPQMVKRLEETHAVYLVA----SGRASIAG-LNQG 395 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCS--SCCTHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCT----TSEEEGGG-CCTT
T ss_pred HHHHHHHHHHHHHHhhCCC--CCeeeeccCceEEEe-eCC-----CHHHHHHHHHhCCEEecc----CcEEEEcc-CCHh
Confidence 7778888888888776410 012222455656655 222 344565555577999987 47999764 5899
Q ss_pred HHHHHHHHHHHHHhccc
Q 012138 429 ELQEGSKALHDVLELDL 445 (470)
Q Consensus 429 ~i~~~~~~l~~~l~~~~ 445 (470)
++++++++|+++++ .+
T Consensus 396 ~i~~~~~~l~~~~~-~~ 411 (412)
T 1yaa_A 396 NVEYVAKAIDEVVR-FY 411 (412)
T ss_dssp THHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHHH-hh
Confidence 99999999999987 53
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=237.39 Aligned_cols=313 Identities=15% Similarity=0.135 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC--e-EEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD--M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~-v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.+|++.+++.+++ ..+... ...+...+++++++++++.+ . +++++||++|++.+++.+.. +|+ .
T Consensus 24 ~~~~v~~a~~~~~--~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~---------~gd-~ 90 (411)
T 3nnk_A 24 ADPRVLRAMSSQL--IGQYDP-AMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR---------PGD-K 90 (411)
T ss_dssp CCHHHHHHHTSCC--CCTTCH-HHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhhccc--cccccH-HHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC---------CCC-E
Confidence 5688888876543 111110 11244678889999988643 3 78999999999999998743 454 8
Q ss_pred EEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccC
Q 012138 169 IVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 242 (470)
Q Consensus 169 ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~ 242 (470)
|++..++||+... ......+.. +..++.+ |+++|++++++. ++++|++++++||+|.+.|
T Consensus 91 Vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 91 VLVPVFGRFGHLLCEIARRCRAE------------VHTIEVPWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCE------------EEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC
T ss_pred EEEecCCchHHHHHHHHHHcCCe------------EEEEecCCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc
Confidence 8888999887422 122222211 1222222 899999999864 6788888888999999997
Q ss_pred ChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCC---
Q 012138 243 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--- 319 (470)
Q Consensus 243 ~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~--- 319 (470)
+++|.++|++||+++|+||+|+. +. ..+....++.+..+.+++|++.++. ++|++++++++++.+....
T Consensus 157 ----l~~i~~l~~~~~~~li~Dea~~~-~~--~~~~~~~~~~d~~~~s~~K~l~~~~-g~g~~~~~~~~~~~~~~~~~~~ 228 (411)
T 3nnk_A 157 ----LAELGEICRRYDALFYTDATASL-GG--NPLETDVWGLDAVSAGMQKCLGGPS-GTSPITLSARMEEAIRRRKCVE 228 (411)
T ss_dssp ----CTTHHHHHHHHTCEEEEECTTTB-TT--BCCCTTTTTCSEEECCSTTTTCCCS-SEEEEEECHHHHHHHHTTCCCC
T ss_pred ----HHHHHHHHHHcCCEEEEECCccc-CC--cccchhccCCcEEEecCccccCCCC-ceEEEEECHHHHHHHhhccccc
Confidence 89999999999999999999872 11 1122333444333446679888877 8999999999987665321
Q ss_pred ---------------------------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Q 012138 320 ---------------------------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 320 ---------------------------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~ 363 (470)
....++.+..+++++.++++.+.+ +++.++.+++++++.+.|++
T Consensus 229 ~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 308 (411)
T 3nnk_A 229 EGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA 308 (411)
T ss_dssp GGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 012235688888888888887665 36778888889999999887
Q ss_pred HHhhCCCceEE-EeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHH
Q 012138 364 IQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKA 436 (470)
Q Consensus 364 l~~~~p~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~ 436 (470)
++.. .... ....+.++.+.++.. .+..++.+.|+++ ||.+.++ .++++|+++ +..++++++++++++
T Consensus 309 ~g~~---~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~ 382 (411)
T 3nnk_A 309 MGLE---TFGDLKHKMNNVLGVVIPQG---INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSA 382 (411)
T ss_dssp TTCC---BCSCGGGBCSSEEEEECCTT---CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred cCCE---eCCCcccccccEEEEECCCC---CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHH
Confidence 5322 1111 012356666666433 2678899999887 9999865 367999997 778899999999999
Q ss_pred HHHHHhcccC
Q 012138 437 LHDVLELDLP 446 (470)
Q Consensus 437 l~~~l~~~~~ 446 (470)
|+++++ ++.
T Consensus 383 l~~~l~-~~~ 391 (411)
T 3nnk_A 383 LEAVLN-YLK 391 (411)
T ss_dssp HHHHHH-HTT
T ss_pred HHHHHH-HcC
Confidence 999998 764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=233.82 Aligned_cols=310 Identities=15% Similarity=0.136 Sum_probs=209.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---e-EEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~-v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|++.+++.+++.. +.+. ...+...+++++++++++.+ . +++++||++|++.+++.+.. +|+
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~-~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~---------~gd- 96 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTT-EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT---------KKD- 96 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSH-HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC---------TTC-
T ss_pred CcHHHHHHhcCCCCC--CCCH-HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC---------CCC-
Confidence 578898888765421 1111 12245678889999988754 4 55589999999999997754 455
Q ss_pred EEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 168 IIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.|++..++|++.... .....+..... .+... ...+ |+++|+++++. ++++|++++++||+|.+.|
T Consensus 97 ~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~-~~~~---d~~~l~~~~~~---~~~~v~~~~~~nptG~~~~---- 162 (376)
T 3f0h_A 97 KVLVIDGGSFGHRFVQLCEIHEIPYVA---LKLEH-GKKL---TKEKLYEYDNQ---NFTGLLVNVDETSTAVLYD---- 162 (376)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTCCEEE---EECCT-TCCC---CHHHHHTTTTS---CCCEEEEESEETTTTEECC----
T ss_pred eEEEEeCChhhHHHHHHHHHcCCceEE---EeCCC-CCCC---CHHHHHHhhcc---CceEEEEecccCCcceecC----
Confidence 666777767664432 11111211110 00000 0111 88999887654 7888998888999999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCc------
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH------ 320 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~------ 320 (470)
+++|.++|++||+++|+||+|+.+++. +..+.++++..+.+++|+++++. ++|++++++++++.+.....
T Consensus 163 l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~-G~g~~~~~~~~~~~~~~~~~~~~~~~ 238 (376)
T 3f0h_A 163 TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPP-GISVIVLAPRGVERVEKSKVRTMYFD 238 (376)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCS-SCEEEEECHHHHHHHHTCCCCCSTTC
T ss_pred HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCC-ceEEEEECHHHHHHhhcCCCCceeec
Confidence 999999999999999999999854332 33444555455567889998766 88999999999887754211
Q ss_pred -----------cCCCCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEE
Q 012138 321 -----------GSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNA 383 (470)
Q Consensus 321 -----------~~t~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~ 383 (470)
++.++.+..+++++.++++.+.+. .+.++.+++++++.+.|+++ + +.... ..+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~--~~~~~~~~~~~~~~ 312 (376)
T 3f0h_A 239 LKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL----P--FELVSESPANGVTS 312 (376)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS----S--EEECCSSBBTTEEE
T ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----C--CccCccccCceEEE
Confidence 123456666667777888876654 35555555666666655543 1 22111 2233343
Q ss_pred EEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 384 VEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+.. .. .+..++.+.|.++ ||.+.++ ..+++|++++..+|++++++++++|+++++
T Consensus 313 ~~~-~~---~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 313 VHP-TT---ANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp EEE-SS---SCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred EeC-CC---CCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 432 22 3678899999999 9999765 357899999999999999999999999987
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=227.99 Aligned_cols=329 Identities=15% Similarity=0.111 Sum_probs=223.5
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-C-----CCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-F-----YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVET 147 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~-----~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~ 147 (470)
.|||+.++ ++.+|++.+++.++++.....+.. + ......+++++++++++.+ ++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 46776554 357899999999998753111110 0 1233578999999998754 89999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchh--cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
+++.+..... .+|+ .|++..++|++...... ...+.... +.+..++ ..+ |+++|++++++ ++
T Consensus 77 ~~~~~~~~~~-----~~gd-~vl~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---d~~~l~~~i~~---~~ 140 (384)
T 1eg5_A 77 ILKTVAETFE-----KRKR-TIITTPIEHKAVLETMKYLSMKGFKVK---YVPVDSR-GVV---KLEELEKLVDE---DT 140 (384)
T ss_dssp HHHHHHHHTT-----TTCC-EEEECTTSCHHHHHHHHHHHHTTCEEE---ECCBCTT-SCB---CHHHHHHHCCT---TE
T ss_pred HHHhhhhhcc-----CCCC-EEEECCCCchHHHHHHHHHHhcCCEEE---EEccCCC-Ccc---CHHHHHHHhCC---CC
Confidence 9998862100 0354 78889999876543321 12221111 1111111 112 89999999875 78
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcC--cEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcc
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIP 301 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g--illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ 301 (470)
++|++++++||+|.++| +++|.++|++|| ++||+||+|+ ++.. .+.+..+ .+|+++ ++|.++. . .
T Consensus 141 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~~~--~~di~~~s~sK~~g~-~-G 209 (384)
T 1eg5_A 141 FLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLEKL--EVDYASFSAHKFHGP-K-G 209 (384)
T ss_dssp EEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCTTT--CCSEEEEEGGGGTSC-T-T
T ss_pred eEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCchhc--CCCEEEecHHHhcCC-C-c
Confidence 99998888999999997 999999999999 9999999997 4432 1222222 457764 4597653 1 3
Q ss_pred eeEEEecHHH--HhhcCcCC---ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 302 VSAVLADKEV--MLCIQPGE---HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 302 ig~v~~~~~~--~~~~~~~~---~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+|++++++++ ...+.... ...+++.++++++++.++|+.+.+ +++.++++++++++.+.|++. .+..
T Consensus 210 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~ 283 (384)
T 1eg5_A 210 VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL------GAHI 283 (384)
T ss_dssp CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT------TCEE
T ss_pred eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC------CeEE
Confidence 6899998876 33332211 124567889999988888887543 567777888888888887662 1222
Q ss_pred Eec----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCH
Q 012138 375 VRG----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISS 427 (470)
Q Consensus 375 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~ 427 (470)
..+ .+.+..+.+.. .+..++.+.|.++||.+.++. .+++||+++..+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 359 (384)
T 1eg5_A 284 ITPLEISLPNTLSVSFPN----IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (384)
T ss_dssp CSCTTSBCTTEEEEECTT----CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred eCCcccCCCCEEEEEeCC----CCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence 221 24455554442 257789999999999998742 36899998888999
Q ss_pred HHHHHHHHHHHHHHhcccCCC
Q 012138 428 NELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 428 e~i~~~~~~l~~~l~~~~~~~ 448 (470)
+++++++++|+++++ ++++.
T Consensus 360 ~~i~~~~~~l~~~~~-~~~~~ 379 (384)
T 1eg5_A 360 EEVDYFLKKIEEILS-FLDLT 379 (384)
T ss_dssp HHHHHHHHHHHHHHH-HC---
T ss_pred HHHHHHHHHHHHHHH-HHHhh
Confidence 999999999999999 87543
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=240.47 Aligned_cols=341 Identities=17% Similarity=0.134 Sum_probs=233.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC----C---CCCCCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS----R---AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~----~---~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
+..|+|. +++|+.++.+.+++.++++.+.... . ....+..+++++++++++|. ++|++++|++++
T Consensus 67 ~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 4456653 2356667788888877775432111 1 01224457889999999875 479999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc---ccCCcccc--cCCCCCCCCeeeecCCCHHHHHHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS---MSCDNEAI--RGFGPLLPGHLKVDFGDITALEKIFK 219 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~d~~~Le~~l~ 219 (470)
++.+++.+.+. + +.++.|++..++||+....... ..+..... ..+.+. .+...+ |+++|+++++
T Consensus 141 l~~~~~~~~~~-----~--~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~-~~~~~~---d~~~l~~~i~ 209 (465)
T 3e9k_A 141 LHLLMLSFFKP-----T--PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPR-EGEETL---RIEDILEVIE 209 (465)
T ss_dssp HHHHHHHHCCC-----C--SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCC-TTCSSC---CHHHHHHHHH
T ss_pred HHHHHHHhccc-----c--CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecC-CCCCcc---CHHHHHHHHH
Confidence 99999877531 1 1244799999999875442221 11111000 000011 011122 7999999998
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 299 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~ 299 (470)
++++++++|++++++||+|.+.| +++|.++|++||+++|+|++|+. |.. .+....++++.-+.+++|.+.+|.
T Consensus 210 ~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~-g~~--~~~~~~~~~D~~~~s~~K~l~~gp 282 (465)
T 3e9k_A 210 KEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAV-GNV--ELYLHDWGVDFACWCSYKYLNAGA 282 (465)
T ss_dssp HHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTS--CCCHHHHTCCEEEECSSSTTCCCT
T ss_pred hcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhc-CCc--CCchhhcCCCEEEECcccccccCC
Confidence 54347999999889999999998 99999999999999999999972 111 112223343323346779996443
Q ss_pred cceeEEEecHHHHhhcCcCCcc---C----------------------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHH
Q 012138 300 IPVSAVLADKEVMLCIQPGEHG---S----------------------TFGGNPLASAVAIASLDVIRD---EKLAERSA 351 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~---~----------------------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~ 351 (470)
.++|++++++++.+.+.+...+ + ..+.++++++++.++++.+.+ +.++++.+
T Consensus 283 ~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~ 362 (465)
T 3e9k_A 283 GGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSV 362 (465)
T ss_dssp TCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2789999999988776543221 1 015678888888899988765 56888888
Q ss_pred HHHHHHHHHHHHHHhhC------CCceEEEec-----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEe
Q 012138 352 HLGEELRQHLFKIQQQF------PNYVKEVRG-----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLT 420 (470)
Q Consensus 352 ~~~~~l~~~L~~l~~~~------p~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~ 420 (470)
++.+++.+.|+++...+ + .+....+ .|.++++.+.. +..++.+.|.++||.+....++++||+
T Consensus 363 ~~~~~l~~~L~~~~~~~~~~~~~~-g~~~~~p~~~~~~g~~~~~~~~~-----~~~~l~~~L~~~Gi~v~~~~~~~iRis 436 (465)
T 3e9k_A 363 LLTGYLEYLIKHNYGKDKAATKKP-VVNIITPSHVEERGCQLTITFSV-----PNKDVFQELEKRGVVCDKRNPNGIRVA 436 (465)
T ss_dssp HHHHHHHHHHHHHCC----------CEEECSCSSGGGBCSCEEEEECC-----TTCCHHHHHHTTTEECEEETTTEEEEB
T ss_pred HHHHHHHHHHHhhccccccccCCC-CeEEeCCCCHhhcccEEEEEecC-----CHHHHHHHHHHCCEEEecCCCCEEEEe
Confidence 88899988887742100 1 2333222 38888887752 355789999999999987667999999
Q ss_pred c-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 421 P-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 421 ~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ ++.+|++||+++++.|+++++ +.
T Consensus 437 ~~~~~~t~edi~~~~~~l~~~l~-~~ 461 (465)
T 3e9k_A 437 PVPLYNSFHDVYKFTNLLTSILD-SA 461 (465)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred CcccCCCHHHHHHHHHHHHHHHH-hc
Confidence 9 899999999999999999998 64
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=227.32 Aligned_cols=329 Identities=15% Similarity=0.106 Sum_probs=219.3
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC------CCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF------YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~a 148 (470)
|+|+.+. ++.+|.+.+++.+++......+... ..+...+++++++++++.+ ++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6676554 2368999999999987643222111 1234568899999998754 699999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc--cCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM--SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.+... +.. +|+ .|++..+.|++.......+ .+.... +.+...+ ..+ |+++|++++++ +++
T Consensus 77 ~~~~~~~-~~~----~gd-~vi~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~~~---d~~~l~~~i~~---~~~ 140 (382)
T 4hvk_A 77 IIGYAMR-NAR----KGK-HILVSAVEHMSVINPAKFLQKQGFEVE---YIPVGKY-GEV---DVSFIDQKLRD---DTI 140 (382)
T ss_dssp HHHHHHH-HGG----GCC-EEEEETTCCHHHHHHHHHHHHTTCEEE---EECBCTT-SCB---CHHHHHHHCCT---TEE
T ss_pred HHHhhhh-hcC----CCC-EEEECCCCcHHHHHHHHHHHhcCCEEE---EeccCCC-CCc---CHHHHHHHhcc---Cce
Confidence 9977621 001 455 7888888866543322221 111110 0111110 111 89999999875 789
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEE
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 306 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~ 306 (470)
+|++++++||+|.+.| +++|.++|++||+ +|+||+|+ ++.. .+.....+.+.-+.+++|.++ +. ++|+++
T Consensus 141 ~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~~d~~~~s~~K~~g-~~-g~g~~~ 210 (382)
T 4hvk_A 141 LVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIGADMLTISSNDIYG-PK-GVGALW 210 (382)
T ss_dssp EEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHTCSEEEEESGGGTS-CT-TCEEEE
T ss_pred EEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcCCCEEEEeHHHhcC-CC-ceEEEE
Confidence 9998888999999998 9999999999999 99999997 2111 112222333222346779654 33 578888
Q ss_pred ecHHHHhhcCcCCcc-------CCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 307 ADKEVMLCIQPGEHG-------STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
++++. .+.+...+ ...+.++.+++++.++++.+.+ +++.++.+++++++.+.|+++ | .+....+
T Consensus 211 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~ 283 (382)
T 4hvk_A 211 IRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----E-ESYLNGH 283 (382)
T ss_dssp EETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T-TEEECSC
T ss_pred EcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----C-CeEEeCC
Confidence 77654 33332221 1334677888888888876554 556777777777777777643 2 2332222
Q ss_pred c----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHH
Q 012138 378 R----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNEL 430 (470)
Q Consensus 378 ~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i 430 (470)
. +.++.+.+.. .+..++.+.|.++||.+.++. .+++|++++..+|++++
T Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i 359 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSY----IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDV 359 (382)
T ss_dssp SSSBCTTEEEEEETT----CCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHH
T ss_pred ccccCCCEEEEEECC----CCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHH
Confidence 2 2455555542 257889999999999998763 58999999988999999
Q ss_pred HHHHHHHHHHHhcccCCCC
Q 012138 431 QEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~~~~ 449 (470)
++++++|+++++ ++.+..
T Consensus 360 ~~~~~~l~~~~~-~~~~~~ 377 (382)
T 4hvk_A 360 DRLLEVLPGVIE-RLRSMS 377 (382)
T ss_dssp HHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHHHH-HHHhhc
Confidence 999999999998 876543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=227.02 Aligned_cols=327 Identities=15% Similarity=0.097 Sum_probs=219.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC-CC-----CCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA-FY-----NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~a 148 (470)
|+|+.++ ++.+|++++++.+++......+.. +. .+...+++++++++++.+ ++++|+||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6777655 357899999999998763211111 11 235678899999999865 899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++.+..+ +.. +|+ .|++..++|++.......+.. .+....+.+...+ .. .|+++|++++++ ++++|
T Consensus 77 ~~~l~~~-~~~----~gd-~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~-~~---~d~~~l~~~i~~---~~~~v 142 (382)
T 4eb5_A 77 IIGYAMR-NAR----KGK-HILVSAVEHMSVINPAKFLQK-QGFEVEYIPVGKY-GE---VDVSFIDQKLRD---DTILV 142 (382)
T ss_dssp HHHHHHH-HGG----GCC-EEEEETTCCHHHHHHHHHHTT-TTCEEEEECBCTT-SC---BCHHHHHHHCCT---TEEEE
T ss_pred HHHHHhh-ccC----CCC-EEEECCCcchHHHHHHHHHHh-CCcEEEEeccCCC-Cc---cCHHHHHHHhcC---CCeEE
Confidence 9988621 001 355 788888887654333221110 0111101111111 11 289999998875 78899
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEE
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
++++++||+|.+.| +++|.++|++||++ |+||+|+ ++.. .+....+ .+|++ +++|.++. . ++|+++
T Consensus 143 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~--~~~~~~~--~~di~~~s~sK~~g~-~-g~G~~~ 210 (382)
T 4eb5_A 143 SVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYGP-K-GVGALW 210 (382)
T ss_dssp ECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB--CCCHHHH--TCSEEEEETGGGTCC-S-SCEEEE
T ss_pred EEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc--ccCcccc--CCCEEEeehHHhcCC-C-ceEEEE
Confidence 98888999999997 99999999999999 9999997 4321 1112222 34655 67797542 2 478888
Q ss_pred ecHHHHhhcCcCC-------ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 307 ADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 307 ~~~~~~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
++++. .+.+.. .....+.++..++++.++++.+.+ +.+.++.+++++++.+.|+++ | .+....+
T Consensus 211 ~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~ 283 (382)
T 4eb5_A 211 IRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----E-ESYLNGH 283 (382)
T ss_dssp EETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T-TEEECSC
T ss_pred Ecccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----C-CeEEeCC
Confidence 87763 122211 112334677777777788887654 456667777777777777653 2 2333222
Q ss_pred ----cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHH
Q 012138 378 ----RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNEL 430 (470)
Q Consensus 378 ----~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i 430 (470)
.+.++.+.+.. .+..++.+.|.++||.+.++. .+++|++++..+|++++
T Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i 359 (382)
T 4eb5_A 284 PEKRLPNNVNVRFSY----IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDV 359 (382)
T ss_dssp SSSBCTTEEEEEETT----SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHH
T ss_pred cccCCCCEEEEEeCC----cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHH
Confidence 25566676642 257789999999999998753 47999998888899999
Q ss_pred HHHHHHHHHHHhcccCC
Q 012138 431 QEGSKALHDVLELDLPK 447 (470)
Q Consensus 431 ~~~~~~l~~~l~~~~~~ 447 (470)
++++++|+++++ ++++
T Consensus 360 ~~~~~~l~~~~~-~~~~ 375 (382)
T 4eb5_A 360 DRLLEVLPGVIE-RLRS 375 (382)
T ss_dssp HHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHH-HHHH
Confidence 999999999998 7765
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=235.50 Aligned_cols=350 Identities=15% Similarity=0.132 Sum_probs=214.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
.|+.||||.++... +.+.+++.+++...... ....+...+++++++++++.+++++|+||++|++.+++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~--y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEA--YAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCC--SSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccc--cccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 36789999877543 67778877776543211 1123456789999999999999999999999999999988
Q ss_pred HHhchhcccCCCCCc--EEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHhcC-CCeE
Q 012138 153 RKWGYVKKKFSIDEA--IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESG-DQIA 226 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~~~-~~~~ 226 (470)
+.+... +|+. .||+. ..+++.+...+...+............+.....++ .|+++|++++++++ ++++
T Consensus 112 ~~~~~~-----~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~ 185 (467)
T 1ax4_A 112 LKYKQK-----EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIV 185 (467)
T ss_dssp HHHHHH-----TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEE
T ss_pred HHhhcc-----CCCccceEEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCee
Confidence 752110 2554 14444 33234434343333321111000000000000111 18999999998642 3689
Q ss_pred EEEEccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEeccccC---C-------cccCCccccccCC----CCccee--
Q 012138 227 GFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSG---L-------ARSGRMLASDWEE----VRPDMV-- 289 (470)
Q Consensus 227 ~vi~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g---~-------g~~G~~~~~~~~~----~~pdi~-- 289 (470)
+|++++++||+ |.++ +.+++++|+++|++||++||+||+|.. + +..|... ...+ ..+|++
T Consensus 186 ~vi~~~~~np~gG~~~-~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~ 262 (467)
T 1ax4_A 186 AIVSTVTCNSAGGQPV-SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI--KEVIFDMYKYADALTM 262 (467)
T ss_dssp EEEEESSBTTTTSBCC-CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCH--HHHHHHHGGGCSEEEE
T ss_pred EEEEeccccCCCccCC-ChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCch--hhhhhhhccccceEEE
Confidence 99999999999 7777 899999999999999999999998762 1 2222110 0000 113555
Q ss_pred eccccccCCCccee-EEEec-H-HHHhhcCcC----CccCCCCCCHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 012138 290 ILGKALGGGVIPVS-AVLAD-K-EVMLCIQPG----EHGSTFGGNPLAS-AVAIASLDVIRDEKLAERSAHLGEELRQHL 361 (470)
Q Consensus 290 s~sK~l~gG~~~ig-~v~~~-~-~~~~~~~~~----~~~~t~~~~~~~~-aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L 361 (470)
+++|++ |. ++| +++++ + ++++.+... ....+++..+..+ +++.++++.+.+++..++..++++++.+.|
T Consensus 263 s~sK~~--g~-~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 339 (467)
T 1ax4_A 263 SAKKDP--LL-NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRL 339 (467)
T ss_dssp ETTSTT--CC-SSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred eccccC--CC-CcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 556655 44 654 45566 5 777665421 1123444444333 333335665444345555567778888888
Q ss_pred HHHHhhCCCceEEEeccceeEEEEec-----cCCCchhHHHHHHHH-HHcCceecc-C----------C------CCEEE
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFD-----KTALPVSAYDICLKM-KERGILAKP-T----------H------DTIVR 418 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~l-~~~Gv~~~~-~----------~------~~~iR 418 (470)
++. .++ .+ .+..|.++++.+. ....+.+..++++.| .++||.+.+ + + .+++|
T Consensus 340 ~~~--~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iR 414 (467)
T 1ax4_A 340 REA--GIP-IQ--YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMR 414 (467)
T ss_dssp HHT--TCC-BC--SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEE
T ss_pred HhC--CCC-cc--cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEE
Confidence 762 221 21 1233444555411 110012577899999 888999876 2 1 27999
Q ss_pred EecC-CCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 419 LTPP-LSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 419 ~~~~-~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
|+++ ..+|++++++++++|.++++ +++++.
T Consensus 415 ls~~~~~~t~e~i~~~~~~l~~~~~-~~~~~~ 445 (467)
T 1ax4_A 415 LTIARRVYTNDHMDYIADALIGLKE-KFATLK 445 (467)
T ss_dssp EECCTTSSCHHHHHHHHHHHHTTHH-HHTTCC
T ss_pred EecccccCCHHHHHHHHHHHHHHHH-hhhcCC
Confidence 9998 45899999999999999998 765543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=233.07 Aligned_cols=288 Identities=11% Similarity=0.055 Sum_probs=201.0
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~~~ 190 (470)
+..+...++++++++++|.+.+++++||++|++.+++.+.. +|+ .|++..++|++...... ...+
T Consensus 61 ~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~---------~gd-~vi~~~~~~~~~~~~~~~~~~~~g-- 128 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ---------QGD-HIVSASAIYGCTHAFLSHSMPKFG-- 128 (398)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSSCHHHHHHHHTHHHHTT--
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCCcccHHHHHHHHHHHcC--
Confidence 34667889999999999988989999999999999997743 454 78888999876543321 1111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|+.+
T Consensus 129 ----------~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 129 ----------INVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp ----------CEEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ----------CEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 11356667799999998875 7899999999999999997 999999999999999999999833
Q ss_pred cccCCccccccCCCCcceeecccccc-CCCcce-eEEEecHHHHh-hcCcCCccC-CCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALG-GGVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~i-g~v~~~~~~~~-~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.. +... .++.+..+.+++|.++ +|. |+ |++++++++++ .+....... +.+.+++.++++.++++.+. ..
T Consensus 192 ~~-~~~~---~~~~di~~~s~sK~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 264 (398)
T 2rfv_A 192 YC-QQPL---QLGADIVVHSVTKYINGHGD-VIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--IR 264 (398)
T ss_dssp TT-CCGG---GGTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--HH
T ss_pred cc-CCch---hhCCcEEEEeCcccccCCCC-ceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH--HH
Confidence 21 2221 2343334468999997 476 88 99999998876 555443444 56788999998888886542 23
Q ss_pred HHHHHHHHHHHHHHHHHHH----------hhCCCceEEE----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC
Q 012138 347 AERSAHLGEELRQHLFKIQ----------QQFPNYVKEV----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 412 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~----------~~~p~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 412 (470)
.++..++...+.+.|++.. ..+| .+... ++.|.+++|.+.... .....+.+.+...|+.+.++
T Consensus 265 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p-~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 265 MERHCENALKIARFLEGHPSITRVYYPGLSSHP-QYELGQRQMSLPGGIISFEIAGGL--EAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTST-THHHHHHHCSSCCSEEEEEETTHH--HHHHHHHTTCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc-cHHHHHhhCCCCceEEEEEEcCCH--HHHHHHHHhCCcceeccCCC
Confidence 3444455555555554421 0011 11111 246888888775311 13444555555556665443
Q ss_pred -------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 413 -------------------------H--DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 413 -------------------------~--~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+ .+.+||+++...+++++++++++|+++
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 1 579999999999999999999888764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=229.89 Aligned_cols=321 Identities=12% Similarity=0.075 Sum_probs=212.7
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~ 154 (470)
+++|.++. .++.+|++.+++.+++..+.. ..+..+.+.++++++++++|. +++++++||++|++.+++.++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~--~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQHA--GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCCCC--STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 56776543 346899999999998864322 223466788999999998864 5799999999999999998854
Q ss_pred hchhcccCCCCCcEEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCC----CHHHHHHHHHhc----CCCe
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKES----GDQI 225 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~Le~~l~~~----~~~~ 225 (470)
+|+ .|++..++|++.... .....+.. +..++.+ |+++|++++++. +.++
T Consensus 89 ---------~gd-~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~ 146 (359)
T 1svv_A 89 ---------PWE-AVIATQLGHISTHETGAIEATGHK------------VVTAPCPDGKLRVADIESALHENRSEHMVIP 146 (359)
T ss_dssp ---------TTE-EEEEETTSHHHHSSTTHHHHTTCC------------EEEECCTTSCCCHHHHHHHHHHSCSTTSCEE
T ss_pred ---------CCC-EEEEcccchHHHHHHHHHhcCCCe------------eEEEeCCCCeecHHHHHHHHHHHHhccCCCc
Confidence 344 888899998776543 12222211 2233332 699999999873 1238
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC--cccCCccccccCC--CCcceeec--cccccCCC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL--ARSGRMLASDWEE--VRPDMVIL--GKALGGGV 299 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~--g~~G~~~~~~~~~--~~pdi~s~--sK~l~gG~ 299 (470)
++|+++++ ||+|.++ +.+++++|.++|++||++||+||+|.+| +..+.. ....+ ..+|++++ +|. ||.
T Consensus 147 ~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~--g~~ 220 (359)
T 1svv_A 147 KLVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA--GGM 220 (359)
T ss_dssp EEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT--TCS
T ss_pred eEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC--CCC
Confidence 89998886 7999999 7899999999999999999999999654 333321 11111 13466654 564 333
Q ss_pred cceeEEEecHHHHhhcCcCC--ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 300 IPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
.++|++++++++++.+.... .+.+++.+....+++.+.++...-+++.++++++++++.+.| +.. .+....+
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~-----~~~~~~~ 294 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL-EAC-----GIRLAWP 294 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT-----TCCBSSC
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC-----CeEEccC
Confidence 37789999998877765431 333344333333333222221111456777888888888888 431 1222223
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHc-Cceecc---CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKP---THDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~---~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.++.| +.. ..++++.|.++ ||.+.+ ...+++||++++.++++++++++++|+++++ ++
T Consensus 295 ~~~~~~~-~~~------~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 358 (359)
T 1svv_A 295 SASNQLF-PIL------ENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVA-ST 358 (359)
T ss_dssp CSSSEEC-BEE------EHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC-----
T ss_pred CccceEE-EEc------CHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHh-cc
Confidence 3444333 221 14788999999 999853 2467899999999999999999999999887 53
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=246.78 Aligned_cols=332 Identities=11% Similarity=0.100 Sum_probs=210.6
Q ss_pred CCCCCHHHHHHHHHHHHHcccc-CCCCCCCcHHHHHHHHhhhh-C------CCeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 89 QGHCHPKIMKALQEQAEKLTLS-SRAFYNDKFPVFAERLTSMF-G------YDMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~-~------~~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
.++.+|++++++.+++....++ +.....++++.+++++.+.. + .+++++|+||++|+..+++.+.......
T Consensus 113 ~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~- 191 (533)
T 3f6t_A 113 LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLK- 191 (533)
T ss_dssp TCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSC-
T ss_pred CCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccC-
Confidence 3446788998888888654433 22233455667777775552 2 2689999999999999998642211111
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC---CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL---PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA 237 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~ 237 (470)
+|+ .|++..++|++.............. .+.. .+...+ |+++|+++++. ++++|+++.++||+
T Consensus 192 ---~gd-~Viv~~p~~~~~~~~~~~~g~~~~~----v~~~~~~~~~~~~---d~~~l~~~l~~---~~k~v~l~~p~NPt 257 (533)
T 3f6t_A 192 ---KGD-KIAINEPIFTPYLRIPELKDYELVE----VDLHSYEKNDWEI---EPNEIEKLKDP---SIKALIVVNPTNPT 257 (533)
T ss_dssp ---TTC-EEEEESSCCHHHHTSGGGGGSEEEE----ECCCEETTTTSEE---CHHHHHHHSCT---TEEEEEEESSCTTT
T ss_pred ---CcC-EEEEcCCCcHHHHHHHHHcCCeEEE----EEecCCcccCCCC---CHHHHHHHhCC---CCeEEEEeCCCCCC
Confidence 344 8889999987654433322221111 1110 011222 79999998865 78888865669999
Q ss_pred ccccCChhhHHHHHHHHH-hcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecHH-----
Q 012138 238 GVIIPPDGYLKAVRDLCS-KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE----- 310 (470)
Q Consensus 238 G~~~~~~~~l~~l~~l~~-~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~~----- 310 (470)
|.++ +.+.+++|.++|+ +||+++|+||+|++|...+........+....+.||||.++ +|+ |+|+++++++
T Consensus 258 G~~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 258 SKEF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW-RLGVIALNEKNVFDD 335 (533)
T ss_dssp CBCC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG-CEEEEEEESSCHHHH
T ss_pred cccc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc-ceEEEEECcHHHHHH
Confidence 9999 8899999999999 69999999999998765433221111223345669999998 898 9999999876
Q ss_pred HHhhc--------------------------------CcCCccCCCCCCHHHHHHH-HHHHHHHh---------h--hhH
Q 012138 311 VMLCI--------------------------------QPGEHGSTFGGNPLASAVA-IASLDVIR---------D--EKL 346 (470)
Q Consensus 311 ~~~~~--------------------------------~~~~~~~t~~~~~~~~aaa-~a~l~~~~---------~--~~~ 346 (470)
+++.+ .......+.+.++++++++ ..++..+. + +.+
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~ 415 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 54443 2233344556666666652 11233332 1 335
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE-EeccCC---Cc----------hhHHHHHHHHH-HcCceecc
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTA---LP----------VSAYDICLKMK-ERGILAKP 411 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~---~~----------~~~~~~~~~l~-~~Gv~~~~ 411 (470)
++.++++.+.+.+.|. .+ +....+.|.++.| .+.... .+ .+..+++.++. ++||.+.|
T Consensus 416 ~~~~~~r~~~l~~~L~-----~~--~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~p 488 (533)
T 3f6t_A 416 RKLVSERYDQLHDAMQ-----AP--KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVD 488 (533)
T ss_dssp HHHHHHHHHHHHHHHT-----CC--CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCT
T ss_pred HHHHHHHHHHHHHhcC-----CC--ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeC
Confidence 5556666666666653 21 2222345555444 332100 00 13445666655 66999988
Q ss_pred CC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 412 TH-----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 412 ~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+. .+++||++. .++++++++++++|.++++ ++.
T Consensus 489 g~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~-~~~ 526 (533)
T 3f6t_A 489 GVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLK-EYY 526 (533)
T ss_dssp TEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHH-HHH
Confidence 63 689999963 2689999999999999998 754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=229.06 Aligned_cols=331 Identities=11% Similarity=0.069 Sum_probs=221.7
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETA 148 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~a 148 (470)
.+|+.|++..+. . ..+|++.+++.+++... . .....+...+++++++++++.+ ++++++||++|++.+
T Consensus 16 ~~~~~~~~~~g~---~---~~~~~v~~a~~~~~~~~--~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGP---S---NAPQRVLDAMSRPILGH--L-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSC---C---CCCHHHHHHTTSCCCCT--T-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCC---C---CCCHHHHHHHHhhhccC--C-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 345666553332 1 26789999887765421 1 1112345678899999998753 699999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
++.+.. +|+ .|++..++|++...... ...+.... +.+...+ . ..|+++|++++++. ++++
T Consensus 87 ~~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~-~---~~d~~~l~~~i~~~--~~~~ 147 (393)
T 2huf_A 87 LCNLLE---------DGD-VILIGHTGHWGDRSADMATRYGADVR---VVKSKVG-Q---SLSLDEIRDALLIH--KPSV 147 (393)
T ss_dssp HHHHCC---------TTC-EEEEEESSHHHHHHHHHHHHTTCEEE---EEECCTT-C---CCCHHHHHHHHHHH--CCSE
T ss_pred HHHHhC---------CCC-EEEEECCCcchHHHHHHHHHcCCeeE---EEeCCCC-C---CCCHHHHHHHHhcc--CCcE
Confidence 998743 454 78888888887421111 11111111 0111111 1 13899999999763 5678
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAV 305 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v 305 (470)
|++++++||+|.+.| +++|.++|++||++||+||+|+ ++.. .+....+ .+|++ +++|+++|+. ++|++
T Consensus 148 v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~sK~l~g~~-G~G~~ 217 (393)
T 2huf_A 148 LFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDRW--EIDAMYTGSQKVLGAPP-GITPV 217 (393)
T ss_dssp EEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTTT--TCSEEECCSSSTTCCCS-SCEEE
T ss_pred EEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhhc--CccEEEECCCcccccCC-CeEEE
Confidence 887777999999997 8999999999999999999986 3322 1222222 35666 5569887665 77999
Q ss_pred EecHHHHhhcCcCC----------------------ccCC-CCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q 012138 306 LADKEVMLCIQPGE----------------------HGST-FGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQ 359 (470)
Q Consensus 306 ~~~~~~~~~~~~~~----------------------~~~t-~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~ 359 (470)
++++++++.+.... ...+ .+.+..+++++.++++.+.+ +.+.++.+++++++.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 297 (393)
T 2huf_A 218 SFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYR 297 (393)
T ss_dssp EECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 99999888764320 0112 23567777777778887643 4577788888899998
Q ss_pred HHHHHHhhCCCceEEEe-ccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHH
Q 012138 360 HLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQE 432 (470)
Q Consensus 360 ~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~ 432 (470)
.|++++.. .+.... ..+.++.+.+... .+..++++.|.++ ||.+.++ ..+++|+++ +...+++++++
T Consensus 298 ~L~~~g~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~ 371 (393)
T 2huf_A 298 GLQDAGFE---LYADPKDRLSTVTTIKVPQG---VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDR 371 (393)
T ss_dssp HHHHTTCC---BSSCGGGBCTTEEEEECCTT---CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHH
T ss_pred HHHHcCCe---eccCccccCCcEEEEEcCCC---CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHH
Confidence 88875211 111100 1234666655422 2577899999876 9999876 368999998 55678999999
Q ss_pred HHHHHHHHHhcccCC
Q 012138 433 GSKALHDVLELDLPK 447 (470)
Q Consensus 433 ~~~~l~~~l~~~~~~ 447 (470)
++++|+++++ +++.
T Consensus 372 ~~~~l~~~~~-~~~~ 385 (393)
T 2huf_A 372 VLQVFQEAVA-AVKP 385 (393)
T ss_dssp HHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHH-HcCC
Confidence 9999999998 7654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=234.63 Aligned_cols=326 Identities=17% Similarity=0.103 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHHHccccCC-CC-----CCCcHHHHHHHHhhhhCCC----eE--EecCChhHHHHHHHHHHHHhchh
Q 012138 91 HCHPKIMKALQEQAEKLTLSSR-AF-----YNDKFPVFAERLTSMFGYD----MV--LPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~l~~~l~~~~~~~----~v--~~~~sGteA~~~al~~~~~~~~~ 158 (470)
+.++.+.+++.+++......+. .+ ......++++++++++|.+ .+ ++++||++|++.++++++.++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 3567787777777764332211 11 1123456778888888865 67 99999999999999999875432
Q ss_pred cccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccc
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
.+| ..++.|++..++|++..... ...+.. +..++.+ |+++|++++++ ++++|+++++
T Consensus 187 ~~g--~~~d~Vi~~~~~~~~~~~~~-~~~G~~------------v~~v~~~~~~~~d~~~Le~~i~~---~~~~v~~~~~ 248 (514)
T 3mad_A 187 TKG--ITAPEAVVPVSAHAAFDKAA-QYFGIK------------LVRTPLDADYRADVAAMREAITP---NTVVVAGSAP 248 (514)
T ss_dssp HHC--CSSCEEEEETTSCTHHHHHH-HHHTCE------------EEEECBCTTSCBCHHHHHHHCCT---TEEEEEEETT
T ss_pred hcC--CCCCeEEEeCccchHHHHHH-HHcCCe------------eEEeeeCCCCCCCHHHHHHHhcc---CCEEEEEeCC
Confidence 222 12248888888876543332 222211 1233332 89999999976 7899998888
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc-----ccCC---ccccccCCCCcceeeccccccCCCcceeEE
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA-----RSGR---MLASDWEEVRPDMVILGKALGGGVIPVSAV 305 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g-----~~G~---~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v 305 (470)
+||+|.+.| +++|.++|++||++||+||+|+++. +.|. .+.....+++..+.+++|.+.+|. ++|++
T Consensus 249 ~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~-~~g~~ 323 (514)
T 3mad_A 249 GYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAK-GTSVI 323 (514)
T ss_dssp CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCS-SCEEE
T ss_pred CCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCC-CeEEE
Confidence 999999997 9999999999999999999999763 3343 333445565444456779988887 99999
Q ss_pred EecHHHHhhcCcCC----c-----cC--CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 012138 306 LADKEVMLCIQPGE----H-----GS--TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY 371 (470)
Q Consensus 306 ~~~~~~~~~~~~~~----~-----~~--t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~ 371 (470)
+++++......... . .. ..+.+....+++.++++.+.. +++.++.+++++++.+.|+++ | .
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g 398 (514)
T 3mad_A 324 LYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI----P-S 398 (514)
T ss_dssp EESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----T-T
T ss_pred EEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----C-C
Confidence 98776654432110 0 00 112233334444555555443 457777788888888888763 2 2
Q ss_pred eEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 372 VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 372 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
+..+.....++++.... .+..++.+.|.++||.+... .++.+|++++ ...+++++++++++|+++++ ++.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~-~~~~~~ 473 (514)
T 3mad_A 399 LKILGDPLWVIAVASDE----LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA-QVRAHP 473 (514)
T ss_dssp CEESSCCSSEEEEECSS----SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH-HHHHCT
T ss_pred eEEeCCCeEEEEEeCCC----CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH-HHHhCC
Confidence 33333333455554322 26788999999999988432 2678999986 44567999999999999998 876543
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=228.83 Aligned_cols=323 Identities=13% Similarity=0.106 Sum_probs=223.7
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
..|+|..+. ++.+|.+.+++.+++.. +. .....+...+++++++++++. +++++|+||++|++.+++.+
T Consensus 9 ~~yl~~~~~------~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~ 79 (392)
T 2z9v_A 9 PVITLTAGP------VNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL 79 (392)
T ss_dssp CSEECSSSC------CCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH
T ss_pred cceeecCCC------cCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh
Confidence 457775422 34789999988776543 11 001123457889999998875 58999999999999999987
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIA 226 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~ 226 (470)
.. +|+ .|++..++|++.....+ ...+.. +..++. .|+++|++++++. ++++
T Consensus 80 ~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~-~~~~ 136 (392)
T 2z9v_A 80 IS---------PDD-VVLNLASGVYGKGFGYWAKRYSPH------------LLEIEVPYNEAIDPQAVADMLKAH-PEIT 136 (392)
T ss_dssp CC---------TTC-CEEEEESSHHHHHHHHHHHHHCSC------------EEEEECCTTSCCCHHHHHHHHHHC-TTCC
T ss_pred cC---------CCC-EEEEecCCcccHHHHHHHHHcCCc------------eEEeeCCCCCCCCHHHHHHHHhcC-CCCc
Confidence 43 454 78888888876531111 111111 112221 2899999999642 2678
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeE
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSA 304 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~ 304 (470)
+|++++++||+|.+.| +++|.++|++||+++|+||+|+ ++.. .+....++ +|++ +++|+++|+. ++|+
T Consensus 137 ~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~~~--~d~~~~s~sK~~~~~~-g~G~ 206 (392)
T 2z9v_A 137 VVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPEDCK--ADIYVTGPNKCLGAPP-GLTM 206 (392)
T ss_dssp EEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGGGT--CSEEEECSSSTTCCCS-CCEE
T ss_pred EEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--cccccccc--ceEEEecCcccccCCC-ceeE
Confidence 8888888999999997 9999999999999999999997 3221 11222233 4655 5679888776 7899
Q ss_pred EEecHHHHhhcCcCC--------------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 012138 305 VLADKEVMLCIQPGE--------------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 305 v~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L 361 (470)
+++++++++.++... .....+.++.+++++.++++.+.+ +.+.++++++++++.+.|
T Consensus 207 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 207 MGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp EEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999877664210 111234677777777888887654 356788888889998888
Q ss_pred HHHHhhCCCceEEE--eccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCC----CCEEEEec-CCCCCHHHHHHH
Q 012138 362 FKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTH----DTIVRLTP-PLSISSNELQEG 433 (470)
Q Consensus 362 ~~l~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~----~~~iR~~~-~~~~t~e~i~~~ 433 (470)
++++ +. ..... ...+.++++.++.. .+..++++.|.++ ||.+.++. .+++|+++ +..+++++++++
T Consensus 287 ~~~g--~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~ 360 (392)
T 2z9v_A 287 TAMG--LS-VWAASDSIASPTTTAVRTPDG---VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAA 360 (392)
T ss_dssp HHTT--CC-BSSSSGGGBCTTEEEEECCTT---CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred HHcC--Ce-eccCCccccCCceEEEECCCC---CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHH
Confidence 8752 11 11100 01456666766432 2578899999998 99998763 68999995 437899999999
Q ss_pred HHHHHHHHhcccC
Q 012138 434 SKALHDVLELDLP 446 (470)
Q Consensus 434 ~~~l~~~l~~~~~ 446 (470)
+++|+++++ ++.
T Consensus 361 ~~~l~~~~~-~~~ 372 (392)
T 2z9v_A 361 LTALGGAMN-AAG 372 (392)
T ss_dssp HHHHHHHHH-HTT
T ss_pred HHHHHHHHH-HcC
Confidence 999999998 764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=228.60 Aligned_cols=289 Identities=15% Similarity=0.083 Sum_probs=205.2
Q ss_pred CcHHHHHHHHhhhhCCC--eE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc-hhcccCCccc
Q 012138 117 DKFPVFAERLTSMFGYD--MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEA 192 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~--~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~~~~ 192 (470)
+...+++++++++++.+ .+ ++++||++|++.+++.+.. +|+ .|++..++||+.... .....+..
T Consensus 44 ~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~g~~-- 111 (416)
T 3isl_A 44 GIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIE---------PED-DVLIPIYGRFGYLLTEIAERYGAN-- 111 (416)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCC---------TTC-EEEEEESSHHHHHHHHHHHHTTCE--
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcC---------CCC-EEEEecCCcccHHHHHHHHhcCCe--
Confidence 44678899999998753 34 4889999999999987743 455 788888998873322 22222211
Q ss_pred ccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccc
Q 012138 193 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 267 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~ 267 (470)
+..++.+ |+++|++++++. ++++|++++++||+|.+.| +++|.++|++||+++|+||+|
T Consensus 112 ----------~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~ 175 (416)
T 3isl_A 112 ----------VHMLECEWGTVFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVA 175 (416)
T ss_dssp ----------EEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTT
T ss_pred ----------eEEEecCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCc
Confidence 1222222 899999999843 6788888888999999997 999999999999999999999
Q ss_pred cCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCC--------------------------
Q 012138 268 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------------------------- 319 (470)
Q Consensus 268 ~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~-------------------------- 319 (470)
+ ++.. .+..+.++ +|++ +++|++.|+. ++|++++++++++.+.+..
T Consensus 176 ~-~~~~--~~~~~~~~--~d~~~~s~~K~l~g~~-g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~ 249 (416)
T 3isl_A 176 T-IGGC--EVKVDEWK--IDAAIGGTQKCLSVPS-GMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYF 249 (416)
T ss_dssp T-TTTS--CCCTTTTT--CSEEECCSSSTTCCCS-SEEEEEECHHHHHHHHTC------------------CCCCSCSTT
T ss_pred c-ccCC--CcchhhcC--CCEEEecCccccCCCC-CeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCcccc
Confidence 7 2111 11223333 4555 5669888887 8999999999887765311
Q ss_pred -----------cc-CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEE
Q 012138 320 -----------HG-STFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNA 383 (470)
Q Consensus 320 -----------~~-~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~ 383 (470)
.. ...+.+..+++++.++++.+.+ +++.++.+++++++.+.|++++.. ..... ...+.++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~~ 326 (416)
T 3isl_A 250 DLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLR---LFGDDSCKMPVVTC 326 (416)
T ss_dssp CHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BCSCGGGBCTTEEE
T ss_pred chHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCE---eccCccccCCcEEE
Confidence 11 1234678888888888887665 467888888899999988875221 11100 11256666
Q ss_pred EEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhcccC
Q 012138 384 VEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNE-LQEGSKALHDVLELDLP 446 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~-i~~~~~~l~~~l~~~~~ 446 (470)
+.+.... +..++.+.|.++ ||.+.++ .++++|++++...++++ +++++++|+++++ ++.
T Consensus 327 ~~~~~~~---~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~-~~~ 391 (416)
T 3isl_A 327 VEIPGGI---DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL-RHN 391 (416)
T ss_dssp EECCTTC---CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HTT
T ss_pred EeCCCCC---CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHH-HcC
Confidence 6664332 678899999888 9999864 36899999866566666 9999999999999 764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=230.39 Aligned_cols=328 Identities=12% Similarity=0.120 Sum_probs=220.8
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHH-ccc-cC-CCCC--CCcHHHHH----HHHhhhhCCCeE-EecCChhHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEK-LTL-SS-RAFY--NDKFPVFA----ERLTSMFGYDMV-LPMNTGAEG 144 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~-~~-~~~~--~~~~~~l~----~~l~~~~~~~~v-~~~~sGteA 144 (470)
++++|+.++.... +|++.+++.++++. ... ++ ..+. .+....++ +++++++|.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~~-----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENFV-----SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCCC-----CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCCC-----CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 3578888876442 79999999998864 221 11 1111 11112333 488888887765 667788999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccc--cchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT--LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
++.+++++.. +|+ .|++..++|++.. ...+...+.......+ +..++... .|+++|++++++.
T Consensus 98 ~~~~~~~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~---~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 98 NMAVYMALME---------PGD-TLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVRPDTEL---IDLEEVRRLALEH- 162 (407)
T ss_dssp HHHHHHHHCC---------TTC-EEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCCTTTSS---CCHHHHHHHHHHH-
T ss_pred HHHHHHHhcC---------CCC-EEEEecccccCccchHHHHHhcCceEEEEec-CCCcccCc---cCHHHHHHHHhhc-
Confidence 9999998743 354 7888899987653 2222221110000000 00001111 2899999999753
Q ss_pred CCeEEEEE-ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-CcccCCccccccCCCCccee--eccccccCC
Q 012138 223 DQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGRMLASDWEEVRPDMV--ILGKALGGG 298 (470)
Q Consensus 223 ~~~~~vi~-epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g-~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG 298 (470)
++++|++ +| +|| .+.+ +++|.++|++||++||+||+|++ +...|.... ... .+|++ +++|+++|+
T Consensus 163 -~~~~v~~~~p-~~~--~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~g~ 231 (407)
T 2dkj_A 163 -RPKVIVAGAS-AYP--RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLRGP 231 (407)
T ss_dssp -CCSEEEECCS-SCC--SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGCCC
T ss_pred -CCeEEEEecc-ccC--CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCCCC
Confidence 5777887 66 554 5665 99999999999999999999994 544443321 111 25766 889988854
Q ss_pred CcceeEEEec-HHHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 299 VIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 299 ~~~ig~v~~~-~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
++|+++++ +++++.+.... .+.+.+.++..++++.++++.+.+ +++.++++++++++.+.|++++ +.
T Consensus 232 --~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~ 303 (407)
T 2dkj_A 232 --RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG------YR 303 (407)
T ss_dssp --SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CE
T ss_pred --CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC------ce
Confidence 78999999 89888775432 333445677777777888887643 5677888888888988888752 22
Q ss_pred EE--eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----------CCEEEEecCC----CCCHHHHHHHHHHH
Q 012138 374 EV--RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------DTIVRLTPPL----SISSNELQEGSKAL 437 (470)
Q Consensus 374 ~~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------~~~iR~~~~~----~~t~e~i~~~~~~l 437 (470)
.. ++.|.++++.+.... .+..++.+.|.++||.+.++. ++++|++++. .+|++++++++++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l 381 (407)
T 2dkj_A 304 IVTGGTDNHLFLVDLRPKG--LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELI 381 (407)
T ss_dssp EGGGSCSSSEEEEECGGGT--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHH
T ss_pred eecCCCCceEEEEECcccC--CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHH
Confidence 22 346778888775321 257789999999999987642 5689999765 38999999999999
Q ss_pred HHHHhcc
Q 012138 438 HDVLELD 444 (470)
Q Consensus 438 ~~~l~~~ 444 (470)
+++++ +
T Consensus 382 ~~~~~-~ 387 (407)
T 2dkj_A 382 DRALL-E 387 (407)
T ss_dssp HHHHH-H
T ss_pred HHHHh-c
Confidence 99999 6
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=226.34 Aligned_cols=307 Identities=13% Similarity=0.095 Sum_probs=209.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETAL 149 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~al 149 (470)
.+++||.++... ++ .+|++.+++.++++.... ..+......++++.++++++ .+++++++|+++|++.++
T Consensus 19 ~~~i~l~~~~~~--~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNENP--FP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCCS--SC-CCHHHHHHHHHTCCGGGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCCC--CC-CCHHHHHHHHHHhhhhhh--hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 457899888543 33 689999999988732211 11222235778888888876 368999999999999998
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL 229 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi 229 (470)
+.+ |+ .|++. ++||+........+. .... .+...+ ..+ |+++| + ++++|+
T Consensus 94 ~~~------------gd-~Vl~~-p~y~~~~~~~~~~g~-~~~~---v~~~~~-~~~---d~~~l-----~---~~~~v~ 143 (335)
T 1uu1_A 94 LMF------------DR-SVFFP-PTYSCYRIFAKAVGA-KFLE---VPLTKD-LRI---PEVNV-----G---EGDVVF 143 (335)
T ss_dssp HHS------------SE-EEECS-SSCHHHHHHHHHHTC-EEEE---CCCCTT-SCC---CCCCC-----C---TTEEEE
T ss_pred HHh------------CC-cEEEC-CCcHHHHHHHHHcCC-eEEE---eccCCC-CCC---CHHHc-----C---CCCEEE
Confidence 865 23 67778 999886654332222 1111 111111 111 44444 2 577777
Q ss_pred -EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCCCcceeecccccc-CCCcceeEEE
Q 012138 230 -FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVL 306 (470)
Q Consensus 230 -~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~~pdi~s~sK~l~-gG~~~ig~v~ 306 (470)
++| +||+|.++ +.+++++|.++| | ++|+||+|++|+.. .... .+..+....+.|+||.++ +|+ |+|+++
T Consensus 144 l~~p-~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~ 215 (335)
T 1uu1_A 144 IPNP-NNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQ-RVGYVV 215 (335)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGG-CCEEEE
T ss_pred EeCC-CCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCccc-CeEEEE
Confidence 666 99999999 555555555544 8 89999999976432 2221 222333345669999998 898 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEE
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 385 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~ 385 (470)
+++++++.+.... .+|+.++++++++.++|+..+ .+++.++++++++++.+.|++++ + ...++.|.++++.
T Consensus 216 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~----~~~~~~~~~~~~~ 287 (335)
T 1uu1_A 216 ASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG--Y----RITDSRGNFVFVF 287 (335)
T ss_dssp ECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT--C----CBCCCCSSEEEEE
T ss_pred eCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC--c----EEcCCCCeEEEEE
Confidence 9999988876432 357889999999988887532 24567777888888888887762 1 1224556676665
Q ss_pred eccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+.. .+..++.+.|.++||.+.+ ..+++|+++ .+++++++++++|+++
T Consensus 288 ~~~----~~~~~~~~~l~~~gi~v~~-~~~~iRis~---~~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 288 MEK----EEKERLLEHLRTKNVAVRS-FREGVRITI---GKREENDMILRELEVF 334 (335)
T ss_dssp CCT----HHHHHHHHHHHHHTEEEEE-ETTEEEEEC---CCHHHHHHHHHHHHCC
T ss_pred CCC----CCHHHHHHHHHHCCEEEEE-CCCeEEEEe---CCHHHHHHHHHHHHhh
Confidence 532 2567899999999999988 467999995 3578899999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-27 Score=228.65 Aligned_cols=322 Identities=14% Similarity=0.086 Sum_probs=205.4
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCe-EEecCChhHHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-v~~~~sGteA~~~al~~~~ 153 (470)
..+|||.++. .++.+|++++++.+++.. +.......+...++++++++++|.+. +++++||++|++.++++++
T Consensus 7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~ 80 (356)
T 1v72_A 7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT 80 (356)
T ss_dssp CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc
Confidence 4578998762 356899999999888632 11111234567899999999988554 8999999999999998764
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccch--hccc--CCcccccCCCCCCCCeeeecCCCHHHHHH-HHHhc----CCC
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMS--CDNEAIRGFGPLLPGHLKVDFGDITALEK-IFKES----GDQ 224 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~Le~-~l~~~----~~~ 224 (470)
. +|+ .|++..++ |+..... +... +.... +.+. +...+ |+++|++ ++++. +.+
T Consensus 81 ~---------~gd-~vi~~~~~-~~~~~~~~~~~~~~~g~~~~---~v~~--~~~~~---d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 81 P---------PWG-NIYCHPAS-HINNDECGAPEFFSNGAKLM---TVDG--PAAKL---DIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp C---------TTE-EEEECTTS-HHHHSSTTHHHHHTTSCEEE---ECCC--GGGCC---CHHHHHHHTTSSTTCTTSCE
T ss_pred C---------CCC-EEEEcCcc-chhhhhchHHHHHhCCcEEE---EecC--CCCeE---cHHHHHHHhhhcchhhccCC
Confidence 3 454 66666665 4443322 2222 22111 0111 01112 8999999 88641 136
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc--ccCCccccccCC--CCccee--eccccccCC
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA--RSGRMLASDWEE--VRPDMV--ILGKALGGG 298 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g--~~G~~~~~~~~~--~~pdi~--s~sK~l~gG 298 (470)
+++|++++++| +|.++ +.+++++|.++|++||++||+||+|..+. ..|.. ....+ ...|++ +++|+ |
T Consensus 142 ~~~v~~~~~~~-tG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g 214 (356)
T 1v72_A 142 PACVSITQATE-VGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G 214 (356)
T ss_dssp EEEEEEESSCT-TSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T
T ss_pred ceEEEEEcCCC-CCccC-CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C
Confidence 89999888665 99988 89999999999999999999999997431 12211 11111 123554 56787 3
Q ss_pred Cccee--EEEecHHHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 299 VIPVS--AVLADKEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 299 ~~~ig--~v~~~~~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
. |+| ++++++++++.+.... ..++.... ...++.++++.++++ ++.++.+++++++.+.|+++ | .+
T Consensus 215 ~-~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~ 286 (356)
T 1v72_A 215 V-LAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----G-GV 286 (356)
T ss_dssp C-SSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----T-TE
T ss_pred C-cCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----C-Cc
Confidence 3 666 7778888877664321 11222221 122233344555442 34556666677777766542 2 23
Q ss_pred EEEe-ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 373 KEVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 373 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.... ..+.++++.+. .++++.|.++||.+.++. .+++|+++++.+|++++++++++|+++++ +.
T Consensus 287 ~~~~~~~~~~~~~~~~--------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~-~~ 353 (356)
T 1v72_A 287 EVLGGTEANILFCRLD--------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAAD-RT 353 (356)
T ss_dssp EEESCCCSSEEEEEEC--------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred EEccCCCccEEEEEcC--------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH-hh
Confidence 3333 33444444432 268899999999998653 68999999999999999999999999887 54
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=223.25 Aligned_cols=303 Identities=16% Similarity=0.107 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~ 167 (470)
.+|++.+++.+++.. +.+ ....+...+++++++++++. +.+++|+||++|+..+++.+. + +
T Consensus 11 ~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-----------~-d 75 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-----------R-G 75 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-----------C-C
T ss_pred CCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-----------C-C
Confidence 678999988776643 110 00123467899999999876 469999999999999988652 2 3
Q ss_pred EEEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 168 IIVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 168 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
.|++..++||+... ......+.. +..++. .|+++|+++++++ ++++|++++++||+|.+.
T Consensus 76 ~vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~ 141 (353)
T 2yrr_A 76 PVLVLVNGAFSQRVAEMAALHGLD------------PEVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLN 141 (353)
T ss_dssp CEEEEECSHHHHHHHHHHHHTTCC------------EEEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEEC
T ss_pred cEEEEcCCCchHHHHHHHHHcCCc------------eEEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceec
Confidence 67778888876411 111111111 122221 2899999999863 567888878899999999
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc--
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP-- 317 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~-- 317 (470)
| +++|.++|++||+++|+||+|+ ++... +....++ +|++ +++|.++++. ++|++++++++++.++.
T Consensus 142 ~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~l~~~~ 211 (353)
T 2yrr_A 142 P----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMG--VDYAFTGSQKCLSAPP-GLAPIAASLEARKAFTGKR 211 (353)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHT--CSEEECCTTSTTCCCS-SCEEEEECHHHHHHCCCCS
T ss_pred C----HHHHHHHHHHcCCeEEEEcCcc-ccccc--ccccccC--ceEEEecCcccccCCC-ceEEEEECHHHHHHhccCC
Confidence 7 9999999999999999999995 54332 2222233 4655 5579888766 78999999999887751
Q ss_pred C-------------CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec---c
Q 012138 318 G-------------EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG---R 378 (470)
Q Consensus 318 ~-------------~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~---~ 378 (470)
. .....++.++.+++++.++++.+.+ +++.++.+++++++.+.|++++ +....+ .
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~ 285 (353)
T 2yrr_A 212 GWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARG------FRPYPKASPL 285 (353)
T ss_dssp CSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT------CEESCSSSBC
T ss_pred CccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC------CccccCccCC
Confidence 0 1122345678888888888887654 3567788888888888887752 111112 3
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQ-EGSKALHDVLE 442 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~-~~~~~l~~~l~ 442 (470)
+.++++.++.. .+..++.+.|.++||.+.++. .+++|++++...++++++ +++++|+++++
T Consensus 286 ~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 286 PTVLVVRPPEG---VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp TTEEEEECCTT---CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCC---CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 45555655422 257889999999999998753 678999987778999999 99999999987
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=225.44 Aligned_cols=308 Identities=17% Similarity=0.068 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~i 169 (470)
.+|++.+++.+++.. + ......+...+++++++++++.+ .+++++||++|++.+++.+.. +|+ .|
T Consensus 12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~---------~gd-~v 78 (352)
T 1iug_A 12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA---------PGE-RV 78 (352)
T ss_dssp CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC---------TTC-EE
T ss_pred CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC---------CCC-eE
Confidence 679999998877642 1 00011234578999999998865 799999999999999998743 454 78
Q ss_pred EEEccCccccccchh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 170 VSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 170 i~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
++..++|++...... ...+..... .+...+ ..+ |+++|++ . ++++|++++++||+|.+.| ++
T Consensus 79 l~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~-~~~---d~~~l~~---~---~~~~v~~~~~~nptG~~~~----l~ 141 (352)
T 1iug_A 79 LVPVYGKFSERFYEIALEAGLVVER---LDYPYG-DTP---RPEDVAK---E---GYAGLLLVHSETSTGALAD----LP 141 (352)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEE---EECCTT-CCC---CTTTSCC---S---SCSEEEEESEETTTTEECC----HH
T ss_pred EEEeCCchhHHHHHHHHHcCCceEE---EeCCCC-CCC---CHHHHhc---c---CCcEEEEEEecCCcceecC----HH
Confidence 888888877541111 111111110 011000 011 5666655 2 6778888788999999997 99
Q ss_pred HHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc-------
Q 012138 249 AVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP------- 317 (470)
Q Consensus 249 ~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~------- 317 (470)
+|.++|++| |+++|+||+|+ ++.. .+....++ +|++ +++|++.++. ++|++++++++++.+..
T Consensus 142 ~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T 1iug_A 142 ALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCPP-GLGFVALSPRALERLKPRGYYLDL 215 (352)
T ss_dssp HHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCCS-CEEEEEECHHHHHTCCCCSSTTCH
T ss_pred HHHHHHHhhCCCCEEEEECCcc-ccCc--ceeccccC--eeEEEecCcccccCCC-ceeEEEECHHHHHHhhCCCceeeH
Confidence 999999999 99999999997 3322 11222223 4655 6679888766 78999999987765321
Q ss_pred ------C-CccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEe
Q 012138 318 ------G-EHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEF 386 (470)
Q Consensus 318 ------~-~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~ 386 (470)
. .....++.++.+++++.++++.+++ +++.++++++++++.+.|++++ +....+ .+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~ 289 (352)
T 1iug_A 216 ARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEGG------LRPVPKRFSPAVAAFYL 289 (352)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTT------CEESCSSBCTTCEEEEC
T ss_pred HHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CcccccccCCeEEEEEc
Confidence 0 1222345788888888888887765 3677788888888888887752 222222 566777766
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
... .+..++++.|.++||.+.++. .+++||+++..++++++++++++|+++++ ++
T Consensus 290 ~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~ 348 (352)
T 1iug_A 290 PEG---VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE-EI 348 (352)
T ss_dssp CTT---CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred CCC---CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHH-Hh
Confidence 532 257889999999999998763 68999999888899999999999999998 65
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=222.28 Aligned_cols=331 Identities=16% Similarity=0.153 Sum_probs=215.4
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~ 154 (470)
.++|||.++... . .+|++.+++.+..... ...+..+...+++++++++++.+.+++++||++|+..+++.+..
T Consensus 3 ~~~i~~~~~~~~---~-p~~~~~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~ 75 (347)
T 1jg8_A 3 HMMIDLRSDTVT---K-PTEEMRKAMAQAEVGD---DVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ 75 (347)
T ss_dssp --CEECSCGGGC---C-CCHHHHHHHHTCCCCC---GGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC
T ss_pred ceEEEeccccCC---C-CCHHHHHHHhcCCCCC---cccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcC
Confidence 356888887543 2 5688888876542111 11123445678999999999999999999999999998876643
Q ss_pred hchhcccCCCCCcEEEEEccCcccccc-c-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEE
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCFHGRTL-A-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFL 229 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi 229 (470)
+|+ .|++..++|..... . .....+..... + . .....+ |+++|++++++. ..++++|+
T Consensus 76 ---------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~~~~~--v-~--~~~~~~---d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 76 ---------RGD-EVILEADSHIFWYEVGAMAVLSGVMPHP--V-P--GKNGAM---DPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp ---------TTC-EEEEETTCHHHHSSTTHHHHHTCCEEEE--E-C--EETTEE---CHHHHHHHSCCSCTTSCCEEEEE
T ss_pred ---------CCC-EEEEcCcchhhhccccchhhccCeEEEE--e-c--CCCCcc---CHHHHHHHhccccccccCceEEE
Confidence 455 77778887532111 1 11212211110 0 0 000112 899999998642 12689999
Q ss_pred EccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCCcc--eeeccccccCCCccee-
Q 012138 230 FEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPD--MVILGKALGGGVIPVS- 303 (470)
Q Consensus 230 ~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~pd--i~s~sK~l~gG~~~ig- 303 (470)
+++++||+ |.++ +.+++++|.++|++||+++|+||+|.- +...+.. ........| ++++||++++ ++|
T Consensus 138 ~~~~~npt~G~~~-~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~ 211 (347)
T 1jg8_A 138 IENTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGARIFNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGS 211 (347)
T ss_dssp EESSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCE
T ss_pred EeccccccCCccC-cHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC--hHHhcccccEEEEecccccCC---CceE
Confidence 88889999 9988 888999999999999999999998751 1112211 110100123 3479999875 456
Q ss_pred EEEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccee
Q 012138 304 AVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF 381 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~ 381 (470)
++++++++++.+... ..++++..+.+.++++..+++... +.+ ++..++++++.+.|++++.. +...++.+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~l~~~L~~~~~~----~~~~~~~~~~ 285 (347)
T 1jg8_A 212 VVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMV-DRL-KEDHENARFLALKLKEIGYS----VNPEDVKTNM 285 (347)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSS-TTH-HHHHHHHHHHHHHHHHHTCB----CCGGGCCSSE
T ss_pred EEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCce----eccCCCcceE
Confidence 466788887665321 223344456677777777776532 223 33445667888888776211 1111345667
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+++.+.... .+..++++.|.++||.+.+.+.+++|++++..++++++++++++|+++++ ++
T Consensus 286 ~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~-~~ 346 (347)
T 1jg8_A 286 VILRTDNLK--VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR-KF 346 (347)
T ss_dssp EEEECTTSS--SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEEccccc--CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH-hc
Confidence 777664211 25788999999999999887778999999888999999999999999887 53
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=228.47 Aligned_cols=319 Identities=15% Similarity=0.144 Sum_probs=219.3
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-H
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-R 153 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~ 153 (470)
+.||||..+.... +|++.+++.++++...+. ..+...++++.++++++.+.+++++||++|++.+++.+ .
T Consensus 30 ~~~id~~~~~~~~-----~~~v~~a~~~~~~~~~y~----~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEEL-----RAETDAAIARVLDSGRYL----LGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGI 100 (399)
T ss_dssp BCSCCHHHHHHHT-----HHHHHHHHHHHHHHTCCS----SSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTC
T ss_pred CcccccCcCCCCC-----CHHHHHHHHHHHhcCCCC----CchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCC
Confidence 5789998875442 289999999988763221 23456889999999999889999999999999999876 3
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI 233 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi 233 (470)
. +|+ .|++..++|++.... +...+..... .+..++...+ |+++|++++++ ++++|++
T Consensus 101 ~---------~gd-~vl~~~~~~~~~~~~-~~~~g~~~~~---~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~--- 157 (399)
T 2oga_A 101 G---------PGD-EVIVPSHTYIASWLA-VSATGATPVP---VEPHEDHPTL---DPLLVEKAITP---RTRALLP--- 157 (399)
T ss_dssp C---------TTC-EEEEESSSCTHHHHH-HHHTTCEEEE---ECBCSSSSSB---CHHHHHHHCCT---TEEEECC---
T ss_pred C---------CcC-EEEECCCccHHHHHH-HHHCCCEEEE---EecCCCCCCc---CHHHHHHhcCC---CCeEEEE---
Confidence 2 454 788899998774433 2222221111 1111111122 89999999875 7888873
Q ss_pred cCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC-cccCCccccccCCCCcceeec----cccccC-CCcceeEEEe
Q 012138 234 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL-ARSGRMLASDWEEVRPDMVIL----GKALGG-GVIPVSAVLA 307 (470)
Q Consensus 234 ~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~-g~~G~~~~~~~~~~~pdi~s~----sK~l~g-G~~~ig~v~~ 307 (470)
+||+|.+.+ +++|.++|++||++||+||+|+.+ ...+.. ++..+|++++ +|.+++ | ++|+++.
T Consensus 158 ~n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~~~sK~~~~~G--~~g~~~~ 226 (399)
T 2oga_A 158 VHLYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGRR-----IGAGSSVAAFSFYPGKNLGCFG--DGGAVVT 226 (399)
T ss_dssp BCGGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTEE-----TTCTTCEEEEECCTTSSSCCSS--CCEEEEE
T ss_pred eCCcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCee-----cccccCEEEEeCCCCccCCcCC--ceEEEEe
Confidence 678999987 999999999999999999999832 223321 2223577765 599986 6 7888887
Q ss_pred c-HHHHhhcCcCCc------------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 308 D-KEVMLCIQPGEH------------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 308 ~-~~~~~~~~~~~~------------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
+ +++++.+..... +.++..++++++++.++++.++ .+.++.+++.+++.+.|.++.. + .+..
T Consensus 227 ~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~g-~--~~~~ 301 (399)
T 2oga_A 227 GDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLPG-I--GLPV 301 (399)
T ss_dssp SCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCTT-C--BCCC
T ss_pred CCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCC-c--cccC
Confidence 5 788766543211 2334678999998888887654 3556667777777777665311 0 0111
Q ss_pred EeccceeE--EEEeccCCCchhHHHHHHHHHHcCceeccCCC---------------------------CEEEEecCCCC
Q 012138 375 VRGRGLFN--AVEFDKTALPVSAYDICLKMKERGILAKPTHD---------------------------TIVRLTPPLSI 425 (470)
Q Consensus 375 ~~~~g~~~--~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------~~iR~~~~~~~ 425 (470)
....+.+. .+.+... +..++.+.|.++||.+.+... +.+||+++..+
T Consensus 302 ~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~ 377 (399)
T 2oga_A 302 TAPDTDPVWHLFTVRTE----RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHL 377 (399)
T ss_dssp CCTTEECCCSSEEEECS----SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTC
T ss_pred CCCCCcceeEEEEEECC----CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCC
Confidence 11122222 2333221 577899999999999876431 57999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|++|+++++++|+++++ +++
T Consensus 378 t~edi~~~~~~l~~~~~-~l~ 397 (399)
T 2oga_A 378 ERPQALRVIDAVREWAE-RVD 397 (399)
T ss_dssp CHHHHHHHHHHHHHHHH-SCC
T ss_pred CHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999999999998 764
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=228.14 Aligned_cols=328 Identities=12% Similarity=0.052 Sum_probs=198.1
Q ss_pred EEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC------CCCCcHHHHHHHHhhhhCCC--eEEecC
Q 012138 68 SIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA------FYNDKFPVFAERLTSMFGYD--MVLPMN 139 (470)
Q Consensus 68 ~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~--~v~~~~ 139 (470)
+.++.++..|+|+.++. ..+|++.+++.++++.....+.. ...+...+++++++++++.+ ++++++
T Consensus 14 ~~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 34556777888887652 36899999999998754211110 12344678999999998764 799999
Q ss_pred ChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHH
Q 012138 140 TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITAL 214 (470)
Q Consensus 140 sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~L 214 (470)
||++|++.+++.+..+.. + +|+..|++..+.|++.......+.. .+.+ +..++.+ |+++|
T Consensus 88 g~t~al~~~~~~l~~~~~-~----~gd~~Vl~~~~~~~~~~~~~~~~~~-~g~~---------~~~v~~~~~~~~d~~~l 152 (400)
T 3vax_A 88 GATESNNIALLGLAPYGE-R----TGRRHIITSAIEHKAVLEPLEHLAG-RGFE---------VDFLTPGPSGRISVEGV 152 (400)
T ss_dssp CHHHHHHHHHHTTHHHHH-H----HTCCEEEEETTSCHHHHHHHHHHHT-TTCE---------EEEECCCTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhhc-c----CCCCEEEECccccHhHHHHHHHHHh-cCCe---------EEEEccCCCCCcCHHHH
Confidence 999999999997762110 0 3442677777776543322222110 0111 1222222 89999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--ecc
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILG 292 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~s 292 (470)
++++++ ++++|++++++||+|.+.| +++|.++|++||++||+||+|+ ++... .+.... +|++ +++
T Consensus 153 ~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~ 219 (400)
T 3vax_A 153 MERLRP---DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGH 219 (400)
T ss_dssp HTTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETG
T ss_pred HHhcCC---CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHH
Confidence 998875 7899998888999999997 9999999999999999999997 22111 121223 6776 556
Q ss_pred ccccCCCcceeEEE-ecHH-HH---hhcCcCCc-------cCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q 012138 293 KALGGGVIPVSAVL-ADKE-VM---LCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELR 358 (470)
Q Consensus 293 K~l~gG~~~ig~v~-~~~~-~~---~~~~~~~~-------~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~ 358 (470)
|. .|+. ++|+++ ++++ +. ..+.+... ....+.++.+++++.++++.+.+ +++.++.+++++++.
T Consensus 220 K~-~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 297 (400)
T 3vax_A 220 KI-GAPK-GVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLL 297 (400)
T ss_dssp GG-TSCS-SCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred Hh-CCCC-ceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 94 4443 678888 7662 11 12222211 12344678888888888887655 567777888888888
Q ss_pred HHHHHHHhhCCCceEEEecc----ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC---------------------
Q 012138 359 QHLFKIQQQFPNYVKEVRGR----GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--------------------- 413 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------------------- 413 (470)
+.|+ . | .+....+. +.++.+.+.. .+..++.+.|. +||.+.++.
T Consensus 298 ~~L~-~----~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (400)
T 3vax_A 298 AGLA-S----T-SFQVNGDQDHVVPHILNLSFED----VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEE 366 (400)
T ss_dssp HHHT-T----T-TCEECSCTTSBCTTEEEEECTT----CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHH
T ss_pred HhhC-C----C-CEEEeCCcccCCCCEEEEEeCC----CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCcc
Confidence 8776 2 1 23332222 3466665542 26788999999 999987752
Q ss_pred --CCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 012138 414 --DTIVRLTP-PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 414 --~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+++||++ +..+|++++++++++|+++++
T Consensus 367 ~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 367 AASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HHTSEEEEEEEEC-------------------
T ss_pred ccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 48999999 888999999999999998876
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=221.41 Aligned_cols=286 Identities=16% Similarity=0.126 Sum_probs=198.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...++++.++++++.+..+++++|++|++.+++.+.. +|+ .|++..++||+............
T Consensus 49 ~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~---------~g~-~vl~~~~~~~~~~~~~~~~~~~~--- 115 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK---------PGD-LLVAPHDCYGGSYRLFDSLAKRG--- 115 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHHHHTTT---
T ss_pred CCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEecCCcHhHHHHHHHHHHhc---
Confidence 44556788999999998877766778889999999997743 344 78889999876332110100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
...+..++.+|+++|++++++ ++++|++++++||+|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 116 ------g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 116 ------CYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp ------SCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred ------CCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 012356677799999999986 7889999999999999997 999999999999999999999966433
Q ss_pred CCccccccCCCCcceeeccccccCCCcce-eEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGGGVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA 351 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~gG~~~i-g~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~ 351 (470)
. . . .++.+..+.+++|.++++..++ |++++++ ++++.+.....+.+.+.++++++++.++++.+. ...++..
T Consensus 183 ~-~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 256 (386)
T 1cs1_A 183 N-P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQ 256 (386)
T ss_dssp C-G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH--HHHHHHH
T ss_pred C-c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHH--HHHHHHH
Confidence 1 1 1 2333333448999998533266 9999875 788877655444456678888888777766442 2334455
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCceecc--
Q 012138 352 HLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-- 411 (470)
Q Consensus 352 ~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-- 411 (470)
++.+.+.+.|+++. .+..+ ++.|.++.+.+.. ....+.+.|.++||.+.+
T Consensus 257 ~~~~~l~~~l~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~~~ 326 (386)
T 1cs1_A 257 RNAQAIVKYLQTQP-----LVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-----DEQTLRRFLGGLSLFTLAES 326 (386)
T ss_dssp HHHHHHHHHHTTCT-----TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----CHHHHHHHHHTCSSSEEBSC
T ss_pred HHHHHHHHHHhcCC-----CeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-----CHHHHHHHHHhCCcceEccc
Confidence 55555555554421 12111 3458888887653 256778888888998863
Q ss_pred -C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 412 -T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 412 -~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+ .++++||+++...++++++.+.+.|+++.
T Consensus 327 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 327 LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 1 14799999998777777777777776653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=228.93 Aligned_cols=346 Identities=16% Similarity=0.138 Sum_probs=216.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKL 151 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~ 151 (470)
.|..|+||.++.++.+ ..+++.+++. .. ...+ ..+...++++.++++++.+++++++||++|++.+++.
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~---~~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~ 109 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MG---DEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQL 109 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TC---CCCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cc---hhhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHH
Confidence 3567999988765433 3466666654 11 1112 2345678999999999999999999999999999987
Q ss_pred HHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCe-eeecCC-CHHHHHHHHHhcC-CCeEE
Q 012138 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGH-LKVDFG-DITALEKIFKESG-DQIAG 227 (470)
Q Consensus 152 ~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-d~~~Le~~l~~~~-~~~~~ 227 (470)
+.. +|+ ++..++||+.+...+...+......+..+. .++. ..+.++ |+++|++++++.. ..+++
T Consensus 110 l~~---------~gd---i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~ 177 (456)
T 2ez2_A 110 AIK---------PGQ---YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAY 177 (456)
T ss_dssp HCC---------TTC---EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred hCC---------CCC---EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeE
Confidence 743 455 667888877755555544432221111100 0000 001112 8999999998632 23588
Q ss_pred EEEccccC-CCccccCChhhHHHHHHHHHhcCcEEEEeccccC----------CcccCCccc-c-ccCCCCcceeecc-c
Q 012138 228 FLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG----------LARSGRMLA-S-DWEEVRPDMVILG-K 293 (470)
Q Consensus 228 vi~epi~n-~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g----------~g~~G~~~~-~-~~~~~~pdi~s~s-K 293 (470)
|++++++| |+|.++ +.+++++|.++|++||++||+||+|+. +.+.|..+. + +..+..+|++++| |
T Consensus 178 v~l~~p~n~ptG~~~-~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~k 256 (456)
T 2ez2_A 178 ICLAVTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGK 256 (456)
T ss_dssp EEEESSBTTTTSBCC-CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETT
T ss_pred EEEeccCCCCCCccC-CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCc
Confidence 88875566 999888 899999999999999999999999983 445554321 0 0112235877664 4
Q ss_pred cccCCCcceeEEEe-cHHHHhhcCcCC---cc-CCC-CCCHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 012138 294 ALGGGVIPVSAVLA-DKEVMLCIQPGE---HG-STF-GGNPLASAV-AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ 366 (470)
Q Consensus 294 ~l~gG~~~ig~v~~-~~~~~~~~~~~~---~~-~t~-~~~~~~~aa-a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~ 366 (470)
.+++.- +.|++++ ++++++.+.... ++ .++ +.+...+++ +.+.++.++ +.+.++.+++.+++.+.|+++
T Consensus 257 k~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-- 332 (456)
T 2ez2_A 257 KDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA-- 332 (456)
T ss_dssp TTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred ccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC--
Confidence 454321 4788888 688877654321 11 122 234334333 444444443 456677777888888888774
Q ss_pred hCCCceEEEeccceeEEEEecc--CCC--ch-hHHHHHHHH-HHcCceecc-C----------------CCCEEEEecCC
Q 012138 367 QFPNYVKEVRGRGLFNAVEFDK--TAL--PV-SAYDICLKM-KERGILAKP-T----------------HDTIVRLTPPL 423 (470)
Q Consensus 367 ~~p~~~~~~~~~g~~~~~~~~~--~~~--~~-~~~~~~~~l-~~~Gv~~~~-~----------------~~~~iR~~~~~ 423 (470)
.++ .+. +..|.++++.+.. +.. .. ....++++| .++||.+.+ + ..+++||+++.
T Consensus 333 g~~-~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~ 409 (456)
T 2ez2_A 333 GVP-IVE--PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPR 409 (456)
T ss_dssp TCC-BCS--SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred CCc-ccc--CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCC
Confidence 121 111 2335555555421 110 01 133447777 577997543 1 13789999988
Q ss_pred C-CCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 424 S-ISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 424 ~-~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
. ++++++++++++|+++++ +.....
T Consensus 410 ~~~t~e~i~~~~~~l~~~l~-~~~~~~ 435 (456)
T 2ez2_A 410 RVYTYAHMDVVADGIIKLYQ-HKEDIR 435 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TGGGCC
T ss_pred CCCCHHHHHHHHHHHHHHHh-hhhhcC
Confidence 7 899999999999999999 766544
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=230.68 Aligned_cols=349 Identities=17% Similarity=0.165 Sum_probs=208.9
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
|+.|||+.++.+. |++.+++.+++.... ..| ..+...+++++++++++.+++++|+||++|++.+++++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~ 109 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVL 109 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHH
Confidence 5679999876543 788888888775322 112 23446789999999999999999999999999999988
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCcccccCCCCC-CCCeeeecC---CCHHHHHHHHHhcC-CCeE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPL-LPGHLKVDF---GDITALEKIFKESG-DQIA 226 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~---~d~~~Le~~l~~~~-~~~~ 226 (470)
+..++..+|.+.++. |++. .||+.+...... .+.... ..+... .+.....++ .|+++|++++++++ ++++
T Consensus 110 ~~~~~~~~G~~~~d~-Ii~~--~~h~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~ 185 (467)
T 2oqx_A 110 IKKREQEKGLDRSKM-VAFS--NYFFDTTQGHSQINGCTVR-NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP 185 (467)
T ss_dssp HHHHHHHHCCCTTTC-EEEE--SSCCHHHHHHHHHTTCEEE-ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCC
T ss_pred hccccccCCCCccce-EEec--ccccccchhhhhccCccee-eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCcee
Confidence 762111101000054 5554 467553222111 111100 000000 000001111 18999999998532 3689
Q ss_pred EEEEccccCCC-ccccCChhhHHHHHHHHHhcCcEEEEeccccC----------CcccCCcc-ccc--cCCCCcc--eee
Q 012138 227 GFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEIQSG----------LARSGRML-ASD--WEEVRPD--MVI 290 (470)
Q Consensus 227 ~vi~epi~n~~-G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g----------~g~~G~~~-~~~--~~~~~pd--i~s 290 (470)
+|++++++||+ |.++ +.+++++|+++|++||++||+|++|.. .+..|... .+. .+. .+| +.+
T Consensus 186 ~vi~~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~~~~s 263 (467)
T 2oqx_A 186 YIVATITSNSAGGQPV-SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-YADMLAMS 263 (467)
T ss_dssp CEEEESSBCGGGCBCC-CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-GCSEEEEE
T ss_pred EEEEeccccCCCCccC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhc-cCCeEEEe
Confidence 99999989997 7777 899999999999999999999977642 13333211 110 000 124 357
Q ss_pred ccccccCCCcce-eEEEecHH-H---HhhcCcC----CccCCCCCCH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 012138 291 LGKALGGGVIPV-SAVLADKE-V---MLCIQPG----EHGSTFGGNP-LASAVAIASLDVIRDEKLAERSAHLGEELRQH 360 (470)
Q Consensus 291 ~sK~l~gG~~~i-g~v~~~~~-~---~~~~~~~----~~~~t~~~~~-~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~ 360 (470)
++|+++. ++ |+++++++ + +..++.. ....+++... .++++....++...+++..++..++++++.+.
T Consensus 264 ~sK~~g~---~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 264 AKKDAMV---PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp SSSTTCC---SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccccCC---CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 7888753 43 45666655 3 3333221 1112233222 22222222223222233556667788888888
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEecc--CCC-c-h-hHHHHHHHH-HHcCceeccCC-----------------CCEE
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDK--TAL-P-V-SAYDICLKM-KERGILAKPTH-----------------DTIV 417 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~--~~~-~-~-~~~~~~~~l-~~~Gv~~~~~~-----------------~~~i 417 (470)
|+++ .++ .+ +..|.++++.+.. ... . . +...+++.| .++||.+.|++ .+++
T Consensus 341 L~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~i 414 (467)
T 2oqx_A 341 LEEI--GVV-CQ---QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELL 414 (467)
T ss_dssp HHHT--TCC-EE---EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HHHC--CCe-ee---cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeE
Confidence 8876 232 22 3345566666531 110 0 1 156678888 88899987632 2799
Q ss_pred EEecCCC-CCHHHHHHHHHHHHHHHhcccCCC
Q 012138 418 RLTPPLS-ISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 418 R~~~~~~-~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
||+++.. +|+++|++++++|+++++ +.++.
T Consensus 415 Rl~~~~~~~t~e~i~~~~~~l~~~l~-~~~~~ 445 (467)
T 2oqx_A 415 RLTIPRATYTQTHMDFIIEAFKHVKE-NAANI 445 (467)
T ss_dssp EECCCTTTSCHHHHHHHHHHHHHHHH-SGGGC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHh-hhhhC
Confidence 9999988 999999999999999999 76543
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=221.18 Aligned_cols=318 Identities=13% Similarity=0.091 Sum_probs=217.2
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.++++.+++.+.+.. .. ..+......++++.++++++.+ ++++++||++|++.+++.+.. +|+ .
T Consensus 29 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~---------~gd-~ 95 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NF-HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE---------EGD-R 95 (396)
T ss_dssp CCHHHHHHTTSCCCC--TT-CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhcccccc--CC-ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcC---------CCC-e
Confidence 568888877665421 00 0011234678889999998753 699999999999999998743 454 7
Q ss_pred EEEEccCcccccc-chhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 169 IVSCCGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 169 ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
|++..++|++... ......+..... .+...+ . ..|+++|++++++. ++++|++++++||+|.++| +
T Consensus 96 vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~-~---~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~ 162 (396)
T 2ch1_A 96 VLIAVNGIWAERAVEMSERYGADVRT---IEGPPD-R---PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----L 162 (396)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEE---EECCTT-S---CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred EEEEcCCcccHHHHHHHHHcCCceEE---ecCCCC-C---CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----H
Confidence 8889999887531 122222211110 011000 0 13899999999863 5678887777999999997 8
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceee--ccccccCCCcceeEEEecHHHHhhcCcC-------
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPG------- 318 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~~~~~~~~~~~~~------- 318 (470)
++|.++|++||++||+||+|+ ++.. .+....+ .+|+++ ++|.++++. ++|++++++++++.+...
T Consensus 163 ~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~~~--~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~ 236 (396)
T 2ch1_A 163 EGVGQICHQHDCLLIVDAVAS-LCGV--PFYMDKW--EIDAVYTGAQKVLGAPP-GITPISISPKALDVIRNRRTKSKVF 236 (396)
T ss_dssp TTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTTT--TCCEEECCCC-CCCCCS-SCEEEEECHHHHHHHHTCSSCCSCG
T ss_pred HHHHHHHHHcCCEEEEEcccc-ccCC--ccchhhc--CcCEEEEcCCccccCCC-CeEEEEECHHHHHhhhhccCcccce
Confidence 999999999999999999998 4322 1222222 357665 459988776 889999999888765321
Q ss_pred ----------------CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--c
Q 012138 319 ----------------EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--G 377 (470)
Q Consensus 319 ----------------~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~ 377 (470)
.....++.+..+++++.++++.+.+ +.+.++.+++++++.+.|++++.. .+.... .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~ 313 (396)
T 2ch1_A 237 YWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLD---IFVKDPRHR 313 (396)
T ss_dssp GGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC---BSSCSGGGB
T ss_pred EechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCe---eccCCcccc
Confidence 0112234677788888888887643 457788888899999999886321 111100 1
Q ss_pred cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 378 RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
.+.++.+.++.. .+..++.+.|.++ ||.+.++ ..+++|+++ ++.++++++++++++|+++++ ++...
T Consensus 314 ~~~~~~~~~~~~---~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~-~~~~~ 386 (396)
T 2ch1_A 314 LPTVTGIMIPKG---VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK-ATHPD 386 (396)
T ss_dssp CTTEEEEECCTT---CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HHCTT
T ss_pred CCceEEEEcCCC---CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH-HhCcc
Confidence 234666665432 2678899999876 9999875 368999998 567799999999999999999 77543
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=228.81 Aligned_cols=322 Identities=12% Similarity=0.038 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHHHccc------cCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 92 CHPKIMKALQEQAEKLTL------SSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
.+.++.+++.+.++.... .......++++++++++.+..+ .++|++|+|+++|+..+++++..
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~------ 175 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS------ 175 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC------
Confidence 356677777777775321 1112233567777777776653 46899999999999999997754
Q ss_pred cCCCCC---cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-------CHHHHHHHHHhcCC--CeEEE
Q 012138 161 KFSIDE---AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-------DITALEKIFKESGD--QIAGF 228 (470)
Q Consensus 161 ~~~~g~---~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~Le~~l~~~~~--~~~~v 228 (470)
+|+ +.|++..++|............. ...++.+ |+++|++++++... ++++|
T Consensus 176 ---~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~-------------~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i 239 (498)
T 3ihj_A 176 ---GGGKSRTGVMIPIPQYPLYSAVISELDAI-------------QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVL 239 (498)
T ss_dssp ---CCGGGSEEEEEEESCCTHHHHHHHHTTCE-------------EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEE
T ss_pred ---CCCCCCCEEEEeCCCchhHHHHHHHcCCE-------------EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEE
Confidence 332 48889999987654433322221 1122221 89999999987422 47777
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC--ccccccC----------CCC-cceeeccccc
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR--MLASDWE----------EVR-PDMVILGKAL 295 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~--~~~~~~~----------~~~-pdi~s~sK~l 295 (470)
++..++||||.++ +.+.+++|+++|++||++||+||+|..+.+.+. ...+... ++. .-+.||||.+
T Consensus 240 ~l~np~NPTG~v~-s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 318 (498)
T 3ihj_A 240 CIINPGNPTGQVQ-SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGY 318 (498)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSST
T ss_pred EEECCCCCCCCcC-CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccc
Confidence 7545599999999 899999999999999999999999997655432 2211110 010 1134899999
Q ss_pred c--CCCcceeEEE---ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHH
Q 012138 296 G--GGVIPVSAVL---ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD-----------VIRD-EKLAERSAHLGEELR 358 (470)
Q Consensus 296 ~--gG~~~ig~v~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~-----------~~~~-~~~~~~~~~~~~~l~ 358 (470)
+ +|+ |+||++ .++++++.+.... ....+.+.++++++.++++ .+++ ..++++++++++++.
T Consensus 319 ~G~~G~-R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~ 396 (498)
T 3ihj_A 319 MGECGY-RGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTE 396 (498)
T ss_dssp TCCSSS-CCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccc-ceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 798 999998 6888888776432 2344567777777666553 2222 345666777777777
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEE-EeccCC--------CchhHHHH--HHHHHHcCceeccC-------CCCEEEEe
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTA--------LPVSAYDI--CLKMKERGILAKPT-------HDTIVRLT 420 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~--------~~~~~~~~--~~~l~~~Gv~~~~~-------~~~~iR~~ 420 (470)
+.|+++ | .+....+.|.|+.| .+..+. .+.+..++ .+.|.++||.+.|+ +.+++|++
T Consensus 397 ~~L~~~----~-g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris 471 (498)
T 3ihj_A 397 DLFNQV----P-GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMT 471 (498)
T ss_dssp HHHHTS----T-TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEE
T ss_pred HHHhcC----C-CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEE
Confidence 777653 2 45556677777766 343221 01123343 44556679998864 24589999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 421 PPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+ ..+++++++++++|.++++ ++.
T Consensus 472 ~--~~~~e~l~~~i~~L~~~~~-~~~ 494 (498)
T 3ihj_A 472 I--LPPVEKLKTVLQKVKDFHI-NFL 494 (498)
T ss_dssp C--CSCHHHHHHHHHHHHHHHH-HHH
T ss_pred e--CCCHHHHHHHHHHHHHHHH-HHH
Confidence 5 5899999999999999988 654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=228.57 Aligned_cols=337 Identities=11% Similarity=0.117 Sum_probs=208.6
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHcc----ccCCCCC-CCcHHHHHHHHhhhh-CC-------CeEEe--cCCh
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT----LSSRAFY-NDKFPVFAERLTSMF-GY-------DMVLP--MNTG 141 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~-~~~~~~l~~~l~~~~-~~-------~~v~~--~~sG 141 (470)
.+||..+..- .++.+|.+.+++.+++..+. .....|. ..-..++.+.+++++ +. ++|++ |+||
T Consensus 51 ~i~l~~g~~~--d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 51 KVNLGVGAYR--DESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp CEEESSCCCC--CTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred eEEeeccccc--CCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence 4677666321 22344444555544432221 1111221 222456666666654 43 58999 9999
Q ss_pred hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh----cccCCcccccCCCCC-CCC-eeeecCCCHHHHH
Q 012138 142 AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI----SMSCDNEAIRGFGPL-LPG-HLKVDFGDITALE 215 (470)
Q Consensus 142 teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~----~~~~~~~~~~~~~~~-~~~-~~~~~~~d~~~Le 215 (470)
++|++.++.+..... +|+ .|++..++|++...... ..+..... .++ ..+ ...+ |+++|+
T Consensus 129 t~al~l~~~~~~~~~-------~gd-~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~----~~~~~~~~~~~~---d~e~l~ 193 (448)
T 3meb_A 129 TGSLHIGFEFLHLWM-------PKA-EFYMPSTTWPNHYGIYDKVFNKLKVPYKE----YTYLRKDGELEI---DFSNTK 193 (448)
T ss_dssp HHHHHHHHHHHHHHC-------TTC-CEEEESSCCTHHHHHHHHHHCTTTSCCEE----ECCBCTTSCSSB---CHHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCC-EEEECCCCCHhHHHHHHhhHHhCCCeEEE----EeccccccCCCc---CHHHHH
Confidence 999998655333211 354 78888999866544333 22221111 111 111 1122 899999
Q ss_pred HHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccccC-CCCcc---e
Q 012138 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWE-EVRPD---M 288 (470)
Q Consensus 216 ~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~~~-~~~pd---i 288 (470)
+++++.+.+++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|++.+. .+....+ +..++ +
T Consensus 194 ~~l~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 194 KDIQSAPEKSIFLFHACAHNPSGIDF-TEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp HHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCcEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 99986544567777666699999999 899999999999999999999999998876541 1112111 12234 4
Q ss_pred eecccccc-CCCcceeEE--Ee---------cH----HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--------hh
Q 012138 289 VILGKALG-GGVIPVSAV--LA---------DK----EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--------DE 344 (470)
Q Consensus 289 ~s~sK~l~-gG~~~ig~v--~~---------~~----~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--------~~ 344 (470)
.||||.++ .|+ |+|++ ++ ++ ++++.+.......+.+.+.+++.++.++|+... -+
T Consensus 273 ~S~SK~~g~~G~-RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 351 (448)
T 3meb_A 273 QSFSKNFGLYGE-RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVK 351 (448)
T ss_dssp EECTTTSCCGGG-CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ecccccCCCccc-cceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 58999998 798 99997 55 34 566555433334455577788877777764321 14
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCC-----ceEEEeccceeEEEEeccCCCchhHHHHHHHH-HHcCceeccCCCCEEE
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPN-----YVKEVRGRGLFNAVEFDKTALPVSAYDICLKM-KERGILAKPTHDTIVR 418 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~iR 418 (470)
.++++++++++++.+.|++++ .|. .+....+.+.++.| +.. .. +++..| .++||.+.|+.. |
T Consensus 352 ~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~g~~~~-~~~-----~~-~~~~~ll~~~gV~v~~G~g---R 419 (448)
T 3meb_A 352 EMSARIHRMRSLLHASLAKRK--TPGPGSKGTWDHILTAIGMFTF-TGL-----TP-EHVDYLKEKWSIYLVKAGG---R 419 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--CCCSTTTCCCTHHHHCCSSEEE-CCC-----CH-HHHHHHHHHHCEEECSGGG---E
T ss_pred HHHHHHHHHHHHHHHHHHhhC--CCCcCcccccceeCCCceEEEe-cCC-----CH-HHHHHHHHhCCEEEeCCCc---E
Confidence 456677777777887777642 111 02223456666666 322 22 455555 556999998642 9
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 419 LTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|++. ..++++|++++++|.++++ ++.
T Consensus 420 is~a-~~~~~~i~~~~~~l~~~l~-~~~ 445 (448)
T 3meb_A 420 MSMC-GLTESNCDYVAEAIHDAVT-KLP 445 (448)
T ss_dssp EEGG-GCCTTTHHHHHHHHHHHHH-HSC
T ss_pred EEEe-cCCHHHHHHHHHHHHHHHH-hcc
Confidence 9864 3477789999999999998 543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=230.65 Aligned_cols=327 Identities=10% Similarity=0.059 Sum_probs=214.9
Q ss_pred CCHHHHHHHHHHHHHccc-cCCCC-----CCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHHH-Hhchhcc
Q 012138 92 CHPKIMKALQEQAEKLTL-SSRAF-----YNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLAR-KWGYVKK 160 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~~-~~~~~~~ 160 (470)
.++++.+++.+.+..... ....| ..++++++++++.+..| .++|++|+|+++|+..+++++. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------ 180 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN------ 180 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS------
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC------
Confidence 567788888887776421 11112 22345566666655543 4689999999999999999875 3
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCC
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGE 236 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~ 236 (470)
+|+ .|++..++|++.............. . ++..+ .+.+ |+++|++++++. +.++++|++..++||
T Consensus 181 ---~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~-~---~~~~~~~~~~---d~~~l~~~l~~~~~~~~~~k~ivl~~p~NP 249 (500)
T 3tcm_A 181 ---EKD-GILVPIPQYPLYSASIALHGGALVP-Y---YLNESTGWGL---ETSDVKKQLEDARSRGINVRALVVINPGNP 249 (500)
T ss_dssp ---TTE-EEEEEESCCTHHHHHHHHTTCEEEE-E---ECBTTTTSBC---CHHHHHHHHHHHHHTTCEEEEEEEESSCTT
T ss_pred ---CCC-EEEEeCCCcHhHHHHHHHcCCEEEE-E---ecccccCCCC---CHHHHHHHHHHHHhcCCCceEEEEECCCCC
Confidence 344 8888999987655443333221110 0 00000 1122 899999999763 225777774455999
Q ss_pred CccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccC--Ccccc----ccCCC---Ccc-ee--eccccc-c-CCCcce
Q 012138 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLAS----DWEEV---RPD-MV--ILGKAL-G-GGVIPV 302 (470)
Q Consensus 237 ~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G--~~~~~----~~~~~---~pd-i~--s~sK~l-~-gG~~~i 302 (470)
||.++ +.+.+++|+++|++||+++|+||+|.++.+.+ ....+ ..++. ..+ ++ ||||++ + +|+ |+
T Consensus 250 tG~~~-s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~-R~ 327 (500)
T 3tcm_A 250 TGQVL-AEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK-RG 327 (500)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG-CC
T ss_pred CcccC-CHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc-ce
Confidence 99999 89999999999999999999999999765532 22211 11211 112 33 899999 4 688 99
Q ss_pred eEEEe---cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 303 SAVLA---DKEVMLCIQPGEHGSTFGGNPLASAVAIASLD-----------VIRD-EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 303 g~v~~---~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
||+++ ++++++.+.... ...++.++++++++..+++ +.+. +.++++++++++++.+.|+++
T Consensus 328 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 328 GYFEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEEEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEEEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99998 888888775432 3455678888888777764 2222 456667777777777777653
Q ss_pred CCCceEEEeccceeEEE-EeccCCC--------ch-hHHHHH-HHHHHcCceeccC-------CCCEEEEecCCCCCHHH
Q 012138 368 FPNYVKEVRGRGLFNAV-EFDKTAL--------PV-SAYDIC-LKMKERGILAKPT-------HDTIVRLTPPLSISSNE 429 (470)
Q Consensus 368 ~p~~~~~~~~~g~~~~~-~~~~~~~--------~~-~~~~~~-~~l~~~Gv~~~~~-------~~~~iR~~~~~~~t~e~ 429 (470)
| .+....++|.|+.| .+..+.. +. ....++ +.|.++||.+.|+ +.+++|+++. .++++
T Consensus 404 -~-g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~ 479 (500)
T 3tcm_A 404 -E-GITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDK 479 (500)
T ss_dssp -T-TEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTT
T ss_pred -C-CcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHH
Confidence 2 45555677777666 2322110 00 122333 4555679999865 2457999965 89999
Q ss_pred HHHHHHHHHHHHhcccC
Q 012138 430 LQEGSKALHDVLELDLP 446 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~~ 446 (470)
+++++++|.++++ ++.
T Consensus 480 i~~~i~~l~~~~~-~~~ 495 (500)
T 3tcm_A 480 IPAVISRFTVFHE-AFM 495 (500)
T ss_dssp HHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHH-HHH
Confidence 9999999999988 654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=221.28 Aligned_cols=283 Identities=15% Similarity=0.139 Sum_probs=199.3
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
.+.++...+++++++++++.+.+++++||++|++.+++.+.+ +|+ .|++..+.|++............
T Consensus 62 r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~---------~gd-~Vi~~~~~y~~~~~~~~~~~~~~-- 129 (392)
T 3qhx_A 62 RTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLR---------PGD-HVVIPDDAYGGTFRLIDKVFTGW-- 129 (392)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHHTGGGG--
T ss_pred CCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEeCCCcchHHHHHHHHHHhc--
Confidence 345667889999999999999999999999999999997743 344 88889999876433221110000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
...+..++.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|+.+ .
T Consensus 130 -------g~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~-~ 194 (392)
T 3qhx_A 130 -------NVEYTPVALADLDAVRAAIRP---TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP-A 194 (392)
T ss_dssp -------TCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-T
T ss_pred -------CcEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence 012456777799999999976 8999999999999999998 999999999999999999999732 1
Q ss_pred cCCccccccCCCCccee--eccccccC-C-CcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G-~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
. ....+..+|++ +++|.+++ | . ++|+++++ +++.+.+.......++..+++.++++...++.+.. ..
T Consensus 195 ~-----~~~~~~~~di~~~S~sK~lg~~g~~-~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--~~ 266 (392)
T 3qhx_A 195 L-----QQPLSLGADVVLHSTTKYIGGHSDV-VGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVL--RM 266 (392)
T ss_dssp T-----CCGGGGTCSEEEEETTTTTTCSSCC-CCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HH
T ss_pred c-----CChHHhCCcEEEEcCccccCCCCCc-eEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HH
Confidence 1 12223345776 58999985 4 5 89999987 68887776555556677889988888777765432 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCcee
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 409 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~ 409 (470)
++..++..++.+.|++. | .+..+ ++.|.++.+++..+. .....+.+.|...|+.+
T Consensus 267 ~~~~~~~~~l~~~L~~~----~-~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~--~~~~~~~~~l~~~~~~~ 339 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEH----P-AISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR--TAAEQLCAKTNIFILAE 339 (392)
T ss_dssp HHHHHHHHHHHHHHHTC----T-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH--HHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHhcC----C-CcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH--HHHHHHHHhCCCceECC
Confidence 45555566666665542 2 23322 445889999886531 35677887777666654
Q ss_pred ccC------------------------CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 410 KPT------------------------HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 410 ~~~------------------------~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+.+ .++.|||++....+++.++.+.++|
T Consensus 340 s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 340 SLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 432 2467999977665555555555443
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=219.63 Aligned_cols=345 Identities=13% Similarity=0.118 Sum_probs=209.1
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC------CCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY------NDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
++..|||+.++. +.+|++.+++.++++....++...+ .+...+++++++++++. +++++++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567788876552 4789999999999876322221111 12346899999999875 479999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC----CCCCCeeeecC------CCHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG----PLLPGHLKVDF------GDITAL 214 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~d~~~L 214 (470)
++.+++.+.+. +......+|+ .|++..|+|++......+..........+. .....+..++. .|+++|
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~gd-~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 91 NNLVIHSTVRC-FHEQQTLQGR-TVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHH-HHHHHHHC-------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHHhh-hhhccccCCc-cccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHH
Confidence 99999987520 0000000354 788888999875211100000000000000 00001122221 278999
Q ss_pred HHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC----------cEEEEeccccCCcccCCccccccCCC
Q 012138 215 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN----------ILMIADEIQSGLARSGRMLASDWEEV 284 (470)
Q Consensus 215 e~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g----------illI~Dev~~g~g~~G~~~~~~~~~~ 284 (470)
++++++ ++++|++++++||+|.+.| +++|.++|++|| ++||+||+|+ ++... +.... .
T Consensus 169 ~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~~--~ 236 (432)
T 3a9z_A 169 LAAVRP---TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVED--L 236 (432)
T ss_dssp HHTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHHH--H
T ss_pred HHhccC---CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChhh--c
Confidence 988875 7899998888999999998 899999999999 9999999996 33221 11211 2
Q ss_pred Cccee--eccccccCCCcceeEEEecHHH-HhhcCcCC-------ccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHH
Q 012138 285 RPDMV--ILGKALGGGVIPVSAVLADKEV-MLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRD--EKLAERSAH 352 (470)
Q Consensus 285 ~pdi~--s~sK~l~gG~~~ig~v~~~~~~-~~~~~~~~-------~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~ 352 (470)
.+|++ +++|.+ |. ++|++++++++ ...+.+.. ....++.++.+++++.++++.+++ +++.+++++
T Consensus 237 ~~d~~~~s~~K~~--g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~ 313 (432)
T 3a9z_A 237 GVDFLTIVGHKFY--GP-RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRD 313 (432)
T ss_dssp CCSEEEEEGGGTT--CC-SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEehhHhc--CC-cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35665 668976 45 79999998776 44444322 122356788888888888887665 567788888
Q ss_pred HHHHHHHHHHHHHhhCCCceEE------EeccceeEEEEeccCCCchhHHHHHHHHH----HcCceecc-----------
Q 012138 353 LGEELRQHLFKIQQQFPNYVKE------VRGRGLFNAVEFDKTALPVSAYDICLKMK----ERGILAKP----------- 411 (470)
Q Consensus 353 ~~~~l~~~L~~l~~~~p~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~----~~Gv~~~~----------- 411 (470)
+++++.+.|+++... .+.. ....+.+..+.+.... .+..++.+.+. +.|+.+.+
T Consensus 314 ~~~~l~~~L~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~ 388 (432)
T 3a9z_A 314 IRDYLEERLEAEFGK---RIHLNSRFPGVERLPNTCNFSIQGSQ--LRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLL 388 (432)
T ss_dssp HHHHHHHHHHHHHGG---GEEESSCCTTCCBCTTEEEEEECSTT--CCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHH
T ss_pred HHHHHHHHHHhccCC---cEEEeCCCCcccCCCCEEEEEeCCCC--CcHHHHHHHhcCeEEeccccccCCCCCCccHHHH
Confidence 999999999885321 0110 0123445666565311 13455655442 12332222
Q ss_pred --C-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 412 --T-----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 412 --~-----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+ ..+++||+++..+|++|+++++++|+++++ +++
T Consensus 389 ~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~-~~~ 429 (432)
T 3a9z_A 389 SCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN-QLE 429 (432)
T ss_dssp HTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred hcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH-Hhc
Confidence 1 137999999988899999999999999988 654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=220.38 Aligned_cols=337 Identities=15% Similarity=0.040 Sum_probs=205.6
Q ss_pred EEeccCCcccccCCCC--CHHHHHHHHHHHHH-ccccCC--CCCCCcHHHHHHHHhhhhC----CCeEEe--cCChhHHH
Q 012138 77 YLDFLSAYSAVNQGHC--HPKIMKALQEQAEK-LTLSSR--AFYNDKFPVFAERLTSMFG----YDMVLP--MNTGAEGV 145 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~l~~~l~~~~~----~~~v~~--~~sGteA~ 145 (470)
+|||..|..-...++. .+.+.+++.+.+.. ....+. ....++++.+++++....+ .++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5677776431122222 24677777766653 111111 1122445555565554433 678877 99999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCeeeecCCCHHHHHHHHHhcCCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
..+++.+..+ .. +|+ .|++..++|++........+. ..... +.. ++...+ |++++++.+++..++
T Consensus 110 ~~~~~~l~~~--~~----~gd-~Vlv~~p~~~~~~~~~~~~g~-~~~~~---~~~~~~~~~~---d~~~l~~~l~~~~~~ 175 (401)
T 7aat_A 110 RVGANFLQRF--FK----FSR-DVYLPKPSWGNHTPIFRDAGL-QLQAY---RYYDPKTCSL---DFTGAMEDISKIPEK 175 (401)
T ss_dssp HHHHHHHHHH--CT----TCC-EEEEEESCCTTHHHHHHHTTC-EEEEE---ECEETTTTEE---CHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHh--cc----CCC-EEEEcCCCchhHHHHHHHcCC-eeEee---eeeccccCcc---CHHHHHHHHHhCCCC
Confidence 9999877532 11 455 788888998765433332221 11100 000 001122 788888888764457
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccccC-CCCcc---eeecccccc-
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWE-EVRPD---MVILGKALG- 296 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~~~-~~~pd---i~s~sK~l~- 296 (470)
++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|++.+. .+..... +..++ +.||||.++
T Consensus 176 ~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~ 254 (401)
T 7aat_A 176 SIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGL 254 (401)
T ss_dssp CEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC
T ss_pred cEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccccc
Confidence 88888777799999999 999999999999999999999999998876542 2111111 11223 359999998
Q ss_pred CCCcceeEEEe---cHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHH--H----h--hhhHHHHHHHHHHHHHHHH
Q 012138 297 GGVIPVSAVLA---DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDV--I----R--DEKLAERSAHLGEELRQHL 361 (470)
Q Consensus 297 gG~~~ig~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~--~----~--~~~~~~~~~~~~~~l~~~L 361 (470)
+|+ |+|++++ +++ +.+.+.......+.+.+..+++++...++. + . -++.+++++++++++.+.|
T Consensus 255 ~G~-RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 333 (401)
T 7aat_A 255 YGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNL 333 (401)
T ss_dssp GGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 898 9999875 555 334333222223334455555555444421 1 1 1345667777788888887
Q ss_pred HHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
++++.. +.+....+.+.++.| ++. +...+...+.++||.+.++ +||+++. .++++|++++++|++++
T Consensus 334 ~~~~~~--~~~~~~~~~~~~~~~-~~~-----~~~~~~~ll~~~gi~v~~~----~Ris~~~-~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 334 KKEGSS--HNWQHITDQIGMFCF-TGL-----KPEQVERLTKEFSIYMTKD----GRISVAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHTTCC--SCCHHHHHCCSSEEE-CCC-----CHHHHHHHHHHHCEECCTT----CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred HhcCCC--CCCceecCCcceEEe-cCC-----CHHHHHHHHHhCCEeccCC----CeEEecc-CChhhHHHHHHHHHHHh
Confidence 765211 123333456677666 332 3444444446679999765 6998764 45556999999999876
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
+
T Consensus 401 ~ 401 (401)
T 7aat_A 401 K 401 (401)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=220.60 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=195.6
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDNEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~~~ 192 (470)
.+...++++.++++++.+.+++++||++|+..+++.+.. +|+ .|++..+.|++.... .....+
T Consensus 61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~---------~gd-~Vl~~~~~y~~~~~~~~~~~~~~g---- 126 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK---------AGD-HLISDECLYGCTHALFEHALTKFG---- 126 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESCCCHHHHHHHHTHHHHTT----
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhC---------CCC-EEEEeCCCchhHHHHHHHHHHHcC----
Confidence 445668999999999988999999999999999987643 455 788889998764331 111111
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-cCcEEEEeccccCCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-~gillI~Dev~~g~g 271 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+++ +++|.++|++ ||+++|+||+|+.+.
T Consensus 127 --------~~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 127 --------IQVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp --------CEEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred --------CEEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 11356666789999998875 7899998888999999997 9999999999 999999999999654
Q ss_pred ccCCccccccCCCCcceeecccccc-CCCcce-eEEEecHHHHh-hcCcCCccC-CCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALG-GGVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~i-g~v~~~~~~~~-~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
.. ..+ + ++.+.-+.+++|.++ +|. |+ |++++++++++ .+....... +.+.+++.++++.++++.+. ...
T Consensus 192 ~~-~~~--~-~~~di~~~S~sK~~~~~g~-ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~ 264 (404)
T 1e5e_A 192 IT-NPV--D-FGVDVVVHSATKYINGHTD-VVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IRM 264 (404)
T ss_dssp TC-CGG--G-GTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred hC-Ccc--c-cCCEEEEEcCccccCCCCC-CeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHH--HHH
Confidence 32 111 2 343333448999998 466 87 99999999887 776554443 45678888888887776432 233
Q ss_pred HHHHHHHHHHHHHHHHHH----hhCCC-----ceEE----EeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc---
Q 012138 348 ERSAHLGEELRQHLFKIQ----QQFPN-----YVKE----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP--- 411 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~----~~~p~-----~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--- 411 (470)
++...+...+.+.|++.. ..+|. .+.. .++.|.|+.|.+.. ....+.+.|.+.||++..
T Consensus 265 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~~i~~~~~s~ 339 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-----GFEGAKKLLDNLKLITLAVSL 339 (404)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-----HHHHHHHHHHTCSSSEESSCC
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-----CHHHHHHHHHhCCCceeccCC
Confidence 334444444444444321 00110 0110 12348899997642 234455556666885432
Q ss_pred C-------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 412 T-------------------------H--DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 412 ~-------------------------~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+ + ++++||+++. |+++++++.|+++++ .+
T Consensus 340 G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~-~~ 395 (404)
T 1e5e_A 340 GGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLD-AL 395 (404)
T ss_dssp CSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH-HH
T ss_pred CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH-HH
Confidence 1 1 5799999765 789999999999887 54
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-25 Score=219.26 Aligned_cols=304 Identities=14% Similarity=0.078 Sum_probs=204.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC
Q 012138 87 VNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE 166 (470)
Q Consensus 87 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~ 166 (470)
..+++.+|+..+++.+ ....+.+.....+...+++++++++++.+++++++||++|++.+++.+.. +|+
T Consensus 28 ~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~---------~gd 96 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLR---------PGD 96 (412)
T ss_dssp SBCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC---------TTC
T ss_pred ceeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhC---------CCC
Confidence 3566677766655443 22233222234466889999999999999999999999999999987633 354
Q ss_pred cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhh
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
.|++..+.|++............. ..+..++. |+++|++++++ ++++|++++++||+|.+.|
T Consensus 97 -~vi~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~---- 158 (412)
T 2cb1_A 97 -EVVAAKGLFGQTIGLFGQVLSLMG---------VTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPD---- 158 (412)
T ss_dssp -EEEEETTCCHHHHHHHHHTTTTTT---------CEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----
T ss_pred -EEEEeCCCchhHHHHHHHHHHHcC---------CEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCccccc----
Confidence 788888887653322111000000 11234443 48999998875 7999999999999999997
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccC-CCcceeEEEecH--------------
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK-------------- 309 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~-------------- 309 (470)
+++|.++|++||+++|+||+|++++..... ....+|++ +++|.+++ |. ++|+++..+
T Consensus 159 l~~i~~l~~~~~~~li~D~~~~~~~~~~~~-----~~~~~di~~~S~~K~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~ 232 (412)
T 2cb1_A 159 LEALATLAEEAGVALVVDNTFGAAGALCRP-----LAWGAHVVVESLTKWASGHGS-VLGGAVLSRETELWRNYPQFLQP 232 (412)
T ss_dssp HHHHHHHHHHHTCEEEEECGGGTTTTSCCG-----GGGTCSEEEEETTTTTTCSSC-CCCEEEEECCCSGGGGSGGGGCC
T ss_pred HHHHHHHHHHcCCEEEEECCCccccccCCc-----cccCCeEEEECCcccccCCCC-cEEEEEEeccccccccccccccc
Confidence 999999999999999999999855322211 12345766 58899974 65 888887543
Q ss_pred --------------HHHhhcCcCC-ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 310 --------------EVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 310 --------------~~~~~~~~~~-~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
++.+.++... ....+..++..++.+...++.+. ...++..++.+++.+.|.+. | .+..
T Consensus 233 ~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~-~v~~ 305 (412)
T 2cb1_A 233 DLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVA--LRVARMSETARFLAERLQGH----P-KVKA 305 (412)
T ss_dssp -------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTC----T-TCSE
T ss_pred cccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHH--HHHHHHHHHHHHHHHHHHcC----C-CeeE
Confidence 3334333221 11223457777777766665442 34455566777777777653 2 2332
Q ss_pred E------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------
Q 012138 375 V------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------------------- 413 (470)
Q Consensus 375 ~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----------------------- 413 (470)
+ ++.|.++.+.+ . +...+.+.|.+.||.+ .++
T Consensus 306 v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~ 378 (412)
T 2cb1_A 306 LRYPGLPEDPAHRNARKYLASGGPILTLDL-G-----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEA 378 (412)
T ss_dssp EECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHH
T ss_pred EECCCCCCCccHHHHHHhCCCCceEEEEEe-C-----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHH
Confidence 3 24577888877 3 3556777777789886 331
Q ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 414 -------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 414 -------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
++.+|+++....++++|+.++++|++
T Consensus 379 ~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 379 RLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 57899999999999999999988864
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=219.89 Aligned_cols=307 Identities=13% Similarity=0.096 Sum_probs=204.1
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC------CeEEecCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY------DMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
.+|++.+++.+.+... .+.. ......++.++++++++. +++++++||++|++.+++.+... ..+|
T Consensus 16 ~~~~v~~a~~~~~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~------~~~g 86 (385)
T 2bkw_A 16 LSGAVQKALDVPSLGH--TSPE-FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS------KAPN 86 (385)
T ss_dssp CCHHHHHTTSCCCCCT--TSHH-HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT------TCSC
T ss_pred chHHHHHHHhcccccc--CCHH-HHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc------CCCC
Confidence 4578888776543321 1000 011244566666666542 68999999999999999977410 0146
Q ss_pred CcEEEEE-ccCccccccchhcccCCcccccCCCCCCCCeeeecC------CCHHHHHHHHHhcCCCeEEEEEccccCCCc
Q 012138 166 EAIIVSC-CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAG 238 (470)
Q Consensus 166 ~~~ii~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~Le~~l~~~~~~~~~vi~epi~n~~G 238 (470)
+ .|++. .+.||..........+.. +..++. .|+++|++++++. ++++|++++++||+|
T Consensus 87 d-~vlv~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG 151 (385)
T 2bkw_A 87 K-NVLVVSTGTFSDRFADCLRSYGAQ------------VDVVRPLKIGESVPLELITEKLSQN--SYGAVTVTHVDTSTA 151 (385)
T ss_dssp C-EEEEECSSHHHHHHHHHHHHTTCE------------EEEECCSSTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTT
T ss_pred C-eEEEEcCCcchHHHHHHHHHcCCc------------eEEEecCCCCCCCCHHHHHHHHhcC--CCCEEEEEccCCCcC
Confidence 6 55455 666666532222222211 112222 2899999999763 578888888899999
Q ss_pred cccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHh-
Q 012138 239 VIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML- 313 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~- 313 (470)
.+.| +++|.++|++| |++||+||+|+ ++.. .+....+ .+|++ +++|+++|+. ++|++++++++++
T Consensus 152 ~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~-G~G~~~~~~~~~~~ 221 (385)
T 2bkw_A 152 VLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAPA-GLSISLCSSRFMDY 221 (385)
T ss_dssp EECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCCS-CEEEEEECHHHHHH
T ss_pred eEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc--CceEEEecCccccccCC-cceEEEEcHHHHHH
Confidence 9997 99999999999 99999999997 2211 1222223 34655 5679888765 7899999988876
Q ss_pred hcCc----------------------CCc--cC-CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH-HHH
Q 012138 314 CIQP----------------------GEH--GS-TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHL-FKI 364 (470)
Q Consensus 314 ~~~~----------------------~~~--~~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L-~~l 364 (470)
.+.. ... +. .++.++.+++++.++++.+.+ +.+.++.+++++++.+.| +++
T Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 301 (385)
T 2bkw_A 222 ALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL 301 (385)
T ss_dssp HTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5421 001 11 235788888888888887654 346677788888888887 654
Q ss_pred HhhCCCceEEEe------ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----CCEEEEe-cC---CCCCHHH
Q 012138 365 QQQFPNYVKEVR------GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLT-PP---LSISSNE 429 (470)
Q Consensus 365 ~~~~p~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~iR~~-~~---~~~t~e~ 429 (470)
+ +.... ..+.++++.+. ...++++.|.++||.+.++. .+++|++ ++ +.+|+++
T Consensus 302 g------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 302 Q------LTSVSRYPSNMSAHGLTAVYVA------DPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp C------CEESSCSSSTTBCSSCEEEECS------CHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred C------ceecccCcccccCCceEEEecC------CHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 1 22221 24666666553 26689999999999998763 5789999 54 3579999
Q ss_pred HHHHHHHHHHHHhccc
Q 012138 430 LQEGSKALHDVLELDL 445 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~ 445 (470)
+++++++|+++++ ++
T Consensus 370 i~~~~~~l~~~~~-~~ 384 (385)
T 2bkw_A 370 MKNCFDLIKLALQ-RK 384 (385)
T ss_dssp HHHHHHHHHHHTT-C-
T ss_pred HHHHHHHHHHHHH-hc
Confidence 9999999999987 64
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=222.02 Aligned_cols=303 Identities=14% Similarity=0.141 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEE
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSC 172 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~ 172 (470)
|++.+++.+.++...+ +..+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++.
T Consensus 17 ~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~---------~gd-~Vi~~ 82 (373)
T 3frk_A 17 YEIKFKFEEIYKRNWF----ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIG---------FGD-EVIVP 82 (373)
T ss_dssp HHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEEE
T ss_pred HHHHHHHHHHHHCCCc----cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEEC
Confidence 4555566555554322 234567899999999999999999999999999999876 32 454 78889
Q ss_pred ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 173 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
.++|++...... ..+.... +.+..++...+ |+++|++++++ ++++|+ ++||+|.+.+ +++|.+
T Consensus 83 ~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~---d~~~l~~~l~~---~~~~v~---~~n~~G~~~~----l~~i~~ 145 (373)
T 3frk_A 83 SNTFIATALAVS-YTGAKPI---FVEPDIRTYNI---DPSLIESAITE---KTKAII---AVHLYGQPAD----MDEIKR 145 (373)
T ss_dssp TTSCTHHHHHHH-HHSCEEE---EECEETTTTEE---CGGGTGGGCCT---TEEEEE---EECCTTCCCC----HHHHHH
T ss_pred CCCcHHHHHHHH-HcCCEEE---EEeccccccCc---CHHHHHHhcCC---CCeEEE---EECCCcCccc----HHHHHH
Confidence 999876443332 2221111 01111111122 78999888875 788888 3789999987 999999
Q ss_pred HHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccC-CCcceeEEEec-HHHHhhcCcC-------
Q 012138 253 LCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPG------- 318 (470)
Q Consensus 253 l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~g-G~~~ig~v~~~-~~~~~~~~~~------- 318 (470)
+|++||++||+||+|+ |.... ....+..+|++++| |.+++ | ..|+++++ +++.+.++..
T Consensus 146 l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~~d~~~~S~~~~K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~ 218 (373)
T 3frk_A 146 IAKKYNLKLIEDAAQAHGSLYK-----GMKVGSLGDAAGFSFYPAKNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEK 218 (373)
T ss_dssp HHHHHTCEEEEECTTCTTCEET-----TEETTSSSSEEEEECCTTSSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSB
T ss_pred HHHHcCCEEEEECCcccCCEEC-----CEeccccccEEEEeCcCCCccCccc--eeEEEEeCCHHHHHHHHHHHhcCccc
Confidence 9999999999999998 22222 23344445887666 99987 6 46777765 4565544321
Q ss_pred -----CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCch
Q 012138 319 -----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 393 (470)
Q Consensus 319 -----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~ 393 (470)
..+.++..+++.++++...++.+ +++.++.+++.+++.+.|.++....| .... .....+..+.+...
T Consensus 219 ~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~---- 290 (373)
T 3frk_A 219 KYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPNVIIP-VEAD-YAKHVWYTFVIRSE---- 290 (373)
T ss_dssp TTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTTEECC-CCCT-TEECCCSSEEEEES----
T ss_pred CCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCceEec-cCCC-CCceeeEEEEEEeC----
Confidence 12334556788877776665544 34667777777777777765431111 0000 01112222222221
Q ss_pred hHHHHHHHHHHcCceeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 394 SAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 394 ~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..++.+.|.++||.+.+.. ...+|+++...+|++||+++++.|+++..
T Consensus 291 ~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 291 KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 57789999999999987442 16899999999999999999999988765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=218.24 Aligned_cols=318 Identities=15% Similarity=0.157 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHH-HccccC--CCC-----CCCcHHHHH-HHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAE-KLTLSS--RAF-----YNDKFPVFA-ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~-~~~~~~--~~~-----~~~~~~~l~-~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.||+|.+++.+++. .+.... ..+ ..+...+++ +++++.++.+.+ ++++||++|++.+++.+..
T Consensus 44 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~------- 116 (425)
T 3ecd_A 44 VSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAK------- 116 (425)
T ss_dssp CCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccC-------
Confidence 48999999998884 221111 011 123445665 678888898877 4599999999999987743
Q ss_pred CCCCCcEEEEEccCccccc-cchhc-ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 162 FSIDEAIIVSCCGCFHGRT-LAAIS-MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
+|+ .|++..++|++.. ..... ..+. .+...+.+..++...+ |+++|++++++. ++++|++++.+| |.
T Consensus 117 --~gd-~Vi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~---d~~~l~~~i~~~--~~~~v~~~~~~~--~~ 185 (425)
T 3ecd_A 117 --PGD-TVLGMSLDAGGHLTHGAKPALSGK-WFNALQYGVSRDTMLI---DYDQVEALAQQH--KPSLIIAGFSAY--PR 185 (425)
T ss_dssp --TTC-EEEEECC-------------------CEEEEECCCTTTSSC---CHHHHHHHHHHH--CCSEEEEECSCC--CS
T ss_pred --CCC-EEEEcccccccceecchhhhhccc-ceeeeecCCCcccCcc---CHHHHHHHHhhc--CCcEEEEccccC--CC
Confidence 455 7888899987722 22111 1111 0110001111111122 899999999753 678888774355 34
Q ss_pred ccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEec-HHHHhhc
Q 012138 240 IIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCI 315 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~-~~~~~~~ 315 (470)
..+ +++|.++|++||++||+||+|. |+.+.+..+... . .+|++ +++|+++ |. ++|+++++ +++.+.+
T Consensus 186 ~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~--~-~~di~~~s~sK~l~-g~-~~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 186 KLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPV--E-HAHVVTSTTHKTLR-GP-RGGFVLTNDEEIAKKI 256 (425)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG--G-TCSEEEEESSGGGC-CC-SCEEEEESCHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCch--h-cCcEEEecCCcccC-CC-CcEEEEeCCHHHHHHH
Confidence 444 8999999999999999999976 554555433211 1 13555 7779994 55 88999987 5676666
Q ss_pred CcCCccCC-CCCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEeccC
Q 012138 316 QPGEHGST-FGGNPLASAVAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKT 389 (470)
Q Consensus 316 ~~~~~~~t-~~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~ 389 (470)
......+. .+.+...++++.+++.. +.+ +++.++++++++++.+.|.+.+ +.... +.+.++++.+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~~~~~~ 330 (425)
T 3ecd_A 257 NSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG------VDLVTGGTDNHLLLVDLRPK 330 (425)
T ss_dssp HHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECGGG
T ss_pred HhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC------CeeccCCCCceEEEEEeCCC
Confidence 54322222 23444444444444443 322 4677888888888888887742 22222 3566777766432
Q ss_pred CCchhHHHHHHHHHHcCceec----cCC------CCEEEEecCCC----CCHHHHHHHHHHHHHHHhccc
Q 012138 390 ALPVSAYDICLKMKERGILAK----PTH------DTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~----~~~------~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. .+...+.+.|.++||.+. |+. .+.+|++++.. ++++++++++++|+++++ +.
T Consensus 331 ~--~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~-~~ 397 (425)
T 3ecd_A 331 G--LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE-AL 397 (425)
T ss_dssp T--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred C--CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHh-cc
Confidence 2 256788889999999988 431 35899996544 459999999999999998 65
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=222.11 Aligned_cols=330 Identities=11% Similarity=0.059 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCC------CCcHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchhcc
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAFY------NDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKK 160 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~~~ 160 (470)
+.++.+.+++.+++......+...+ ..+..++++++++++|.+ .+++++||++|+..++++++.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999999887543221111 233457788888888765 799999999999999999987544333
Q ss_pred cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 161 KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 161 ~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
|.+ ++.|++..++| .....+....+...... +...+...+ |+++|++++++ ++++|+++.++||+|.+
T Consensus 155 g~~--~~~Vi~~~~~h-~~~~~~~~~~G~~~~~v---~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~~p~nptG~~ 222 (497)
T 3mc6_A 155 GIT--EPEIIAPVTAH-AGFDKAAYYFGMKLRHV---ELDPTTYQV---DLGKVKKFINK---NTVLLVGSAPNFPHGIA 222 (497)
T ss_dssp CCS--SCEEEEETTSC-HHHHHHHHHSCCEEEEE---CBCTTTCSB---CTTTTGGGCCS---SEEEEEEETTCTTTCCC
T ss_pred CCC--CceEEEeCCcc-HHHHHHHHHcCCeEEEE---ecCcccCcC---CHHHHHHHHhh---CCEEEEEECCCCCCCcC
Confidence 321 23777777775 44444433333221111 111101122 78889988875 78999988889999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCccc-------CC--ccccccCCCCccee--eccccccCCCcceeEEEecH
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARS-------GR--MLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK 309 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~-------G~--~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~ 309 (470)
.| +++|.++|++||++||+||+|+++... |. .+.....++ |++ ++.|.+.+|. ++|++++++
T Consensus 223 ~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~-~~g~~~~~~ 295 (497)
T 3mc6_A 223 DD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPK-GSSVIMYRN 295 (497)
T ss_dssp CS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCS-SCEEEECSS
T ss_pred CC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCC-CceeEEecC
Confidence 97 899999999999999999999865332 11 133334454 554 5568887887 999999877
Q ss_pred HHHhhcCcC----CccCC-----C--CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 310 EVMLCIQPG----EHGST-----F--GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 310 ~~~~~~~~~----~~~~t-----~--~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
+.+...... ..++. + +.+....+++.++++.+.+ .++.++..++++++.+.|++. .| .+..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~-g~~~~ 371 (497)
T 3mc6_A 296 SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IP-DLDIM 371 (497)
T ss_dssp HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CT-TCEEC
T ss_pred HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CC-CEEEe
Confidence 665543211 11111 1 1223334445555665554 345566777778888877762 12 23322
Q ss_pred -eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 376 -RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 376 -~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
.+.+.++.|.... .+..++.+.|.++||.+.... ++.+|++++ .+|++++++++++|+++++ ++.+..
T Consensus 372 ~~~~~~~v~~~~~~----~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~-~~~~~~ 441 (497)
T 3mc6_A 372 GNPRYSVISFSSKT----LNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQ-ELKSES 441 (497)
T ss_dssp SCCCSSEEEEECTT----TTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHH-HHTCC-
T ss_pred cCCCeeEEEEeCCC----CCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHH-HHHhCc
Confidence 3556666665432 367899999999999887653 567899988 7899999999999999999 876543
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=222.42 Aligned_cols=286 Identities=18% Similarity=0.181 Sum_probs=196.4
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
..+.++...+++++++++.|.+.+++++||++|++.+++.+.+ +|+ .|++..++|++..........
T Consensus 76 ~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~---------~Gd-~Vi~~~~~y~~~~~~~~~~~~--- 142 (414)
T 3ndn_A 76 SRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLG---------AGD-RLVAARSLFGSCFVVCSEILP--- 142 (414)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC---------TTC-EEEEESCCCHHHHHHHHTHHH---
T ss_pred CCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCccchHHHHHHHHHH---
Confidence 3455677899999999999999999999999999999987643 455 788899998874332211000
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
.....+..++.+|+++|++++++ ++++|++++++||+|.+.+ +++|.++|++||++||+||+|+
T Consensus 143 ------~~g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~--- 206 (414)
T 3ndn_A 143 ------RWGVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA--- 206 (414)
T ss_dssp ------HTTCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT---
T ss_pred ------HcCcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc---
Confidence 00112467777899999999976 7889999999999999997 9999999999999999999997
Q ss_pred ccCCccccccCCCCcceeeccccccC-C-CcceeEEEecHHHHh-hcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 272 RSGRMLASDWEEVRPDMVILGKALGG-G-VIPVSAVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~s~sK~l~g-G-~~~ig~v~~~~~~~~-~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
+|..+....++.+..+.+++|.+++ | + ++|+++++++.+. .+...........++..++++...++.+. ...+
T Consensus 207 -~~~~~~~~~~g~div~~S~sK~l~~~G~~-~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~ 282 (414)
T 3ndn_A 207 -TPLLQQGFPLGVDVVVYSGTKHIDGQGRV-LGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA--IRVQ 282 (414)
T ss_dssp -HHHHCCCGGGTCSEEEEETTTTTTCSSCC-CCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHH
T ss_pred -ccccCCchhcCCCeEeccCCccccCCCCc-eEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--HHHH
Confidence 2211112234555556689999986 6 5 8999999988765 44422111222346777666665555442 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccC----CCchhHHHHHHHHHHcC
Q 012138 349 RSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKT----ALPVSAYDICLKMKERG 406 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~----~~~~~~~~~~~~l~~~G 406 (470)
+..+++.++.+.|++. | .+..+ ++.|.++++++... . ....++.+.|...+
T Consensus 283 ~~~~~a~~l~~~L~~~----p-~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~--~~~~~~~~~l~~~~ 355 (414)
T 3ndn_A 283 HSNASAQRIAEFLNGH----P-SVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK--QRAFEVLDKMRLID 355 (414)
T ss_dssp HHHHHHHHHHHHHHTC----T-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH--HHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHHhcC----C-CEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH--HHHHHHHHhCccce
Confidence 5555566666666543 2 22222 45688999988642 1 25677788777666
Q ss_pred ceeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 407 ILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 407 v~~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+.++.+ .++.+||++.+ |+++++++.|+++|
T Consensus 356 ~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 356 ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 554432 25789999544 66777777777765
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=214.32 Aligned_cols=289 Identities=15% Similarity=0.119 Sum_probs=198.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+..+...+++++++++++.+.+++++||++|+..+++.+.. +|+ .|++..+.||+.......+.....
T Consensus 62 ~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~---------~gd-~vl~~~~~~~~~~~~~~~~~~~~g-- 129 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR---------PGD-EVLLGNTLYGCTFAFLHHGIGEFG-- 129 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSCCSHHHHHHHHTGGGGT--
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhc---------CCC-EEEEeCCCchhHHHHHHHHHHHcC--
Confidence 35667889999999999988999999999999999997743 344 788899998765433211111000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|+.+. .
T Consensus 130 -------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~-~ 194 (398)
T 1gc0_A 130 -------VKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPY-L 194 (398)
T ss_dssp -------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHH-H
T ss_pred -------CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccc-c
Confidence 11345666799999999875 7999999999999999997 9999999999999999999998432 1
Q ss_pred CCccccccCCCCcceeeccccccC-CCcce-eEEEecHHHHh-hcCcCCcc-CCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHG-STFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~s~sK~l~g-G~~~i-g~v~~~~~~~~-~~~~~~~~-~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
+... .++.+..+.+++|.+++ |. |+ |++++++++++ .+...... .+.+.+++.++++.++++.+. ...++
T Consensus 195 ~~~~---~~~~d~~~~S~sK~~~~~~~-~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 268 (398)
T 1gc0_A 195 QRPL---ELGADLVVHSATKYLSGHGD-ITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN--LRMDR 268 (398)
T ss_dssp CCGG---GGTCSEEEEETTTTTTCSSS-CCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred CCch---hhCceEEEECCccccCCCCC-CeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHH--HHHHH
Confidence 2211 23444455689999994 55 77 88989887665 45443333 445678888888877776542 23445
Q ss_pred HHHHHHHHHHHHHHHHh----hCCC-----ceEE----EeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc---C-
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPN-----YVKE----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP---T- 412 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~-----~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~- 412 (470)
..++...+.+.|+++.. .+|. .+.. .++.|.++.+.+.. ....+.+.+.+.|+.+.. +
T Consensus 269 ~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~i~~~~~s~G~ 343 (398)
T 1gc0_A 269 HCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-----GIGAGRRFMNALQLFSRAVSLGD 343 (398)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-----HHHHHHHHHHHCSSSEECSCCSC
T ss_pred HHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-----CHHHHHHHHHhCCCceeccCCCC
Confidence 55555566665554210 0110 0000 13568888887752 234455666666776532 1
Q ss_pred --------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 413 --------------------------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 413 --------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.++.+||+++...++++|+.+.++|+++
T Consensus 344 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 344 AESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 1479999999999999999999988765
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=216.51 Aligned_cols=311 Identities=15% Similarity=0.159 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIV 170 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii 170 (470)
-++++.+++.++++...+. +.+...++++.++++++.+++++++||++|++.+++++ .. +|+ .|+
T Consensus 18 ~~~~~~~a~~~~~~~~~~~----~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~---------~gd-~Vl 83 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWIT----TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIG---------EGD-EVI 83 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCS----SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEE
T ss_pred CCHHHHHHHHHHHhcCCcC----CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCC---------CCC-EEE
Confidence 3588999999998775322 34557889999999999999999999999999999876 32 454 788
Q ss_pred EEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHH
Q 012138 171 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV 250 (470)
Q Consensus 171 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l 250 (470)
+..++|++..... ...+..... .+..++...+ |+++|++++++ ++++|++++ ++|.+.+ +++|
T Consensus 84 ~~~~~~~~~~~~~-~~~g~~~~~---v~~~~~~~~~---d~~~l~~~l~~---~~~~v~~~~---~~G~~~~----~~~i 146 (393)
T 1mdo_A 84 TPSMTWVSTLNMI-VLLGANPVM---VDVDRDTLMV---TPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAI 146 (393)
T ss_dssp EESSSCHHHHHHH-HHTTCEEEE---ECBCTTTCCB---CHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHH
T ss_pred eCCCccHhHHHHH-HHCCCEEEE---EeccCCcCCC---CHHHHHHhcCC---CceEEEEeC---CCCCcCC----HHHH
Confidence 8999987654332 222221111 1111111122 89999999875 788888654 7898887 9999
Q ss_pred HHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcCCc----
Q 012138 251 RDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPGEH---- 320 (470)
Q Consensus 251 ~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~~~---- 320 (470)
.++|++||+++|+||+|+ |+.+.+.. ++. +|++++| |.++|| ++|+++.+ +++++.+.....
T Consensus 147 ~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~ 218 (393)
T 1mdo_A 147 YALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLG 218 (393)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEE
T ss_pred HHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCc
Confidence 999999999999999998 44344432 222 5777555 888775 78999986 777776543211
Q ss_pred --------------------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE--EEecc
Q 012138 321 --------------------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGR 378 (470)
Q Consensus 321 --------------------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~--~~~~~ 378 (470)
+..+..+++.++++...++.++ ++.++.+++.+++.+.|.++..+++ ... ..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~ 295 (393)
T 1mdo_A 219 VDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLPFQPL-SLPSWEHIHA 295 (393)
T ss_dssp CC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSSCEEC-CCCSSCEECC
T ss_pred ccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcccc-cCCCCCCCce
Confidence 1113357777777776665443 4566667777788877766421100 000 12234
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-------------------------CCEEEEecCCCCCHHHHHHH
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------------------~~~iR~~~~~~~t~e~i~~~ 433 (470)
+.++++.++....+.+..++.+.|.++||.+.++. .+.+|+++...+|++|++++
T Consensus 296 ~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~ 375 (393)
T 1mdo_A 296 WHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRV 375 (393)
T ss_dssp CSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHH
T ss_pred eEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHH
Confidence 45677766520000257889999999999987643 23799998888999999999
Q ss_pred HHHHHHHHhccc
Q 012138 434 SKALHDVLELDL 445 (470)
Q Consensus 434 ~~~l~~~l~~~~ 445 (470)
+++|+++++ ..
T Consensus 376 ~~~l~~~~~-~~ 386 (393)
T 1mdo_A 376 ITALHQIAG-QG 386 (393)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHh-cC
Confidence 999999987 54
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=221.85 Aligned_cols=332 Identities=12% Similarity=0.097 Sum_probs=211.3
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhh-C-------CCeE--EecCChhHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMF-G-------YDMV--LPMNTGAEG 144 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~-------~~~v--~~~~sGteA 144 (470)
.+|||..+... ....+|.+.+++.++..... ..| ...-..++.+.+++++ + .+++ ..+++|++|
T Consensus 42 ~~i~l~~g~~~--d~~~~~~v~~a~~~a~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga 116 (409)
T 4eu1_A 42 RKVNLSIGVYR--DDADQPFVLECVKQATLGTN---MDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGA 116 (409)
T ss_dssp SCEECCCSSCC--CTTSCCCCCHHHHTCCCCSC---CCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHH
T ss_pred CceeeeeeEEE--CCCCCEeecHHHHhcCcccc---ccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHH
Confidence 46788877421 33366778888877622111 112 1222356666666653 3 3456 448999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC-CCeeeecCCCHHHHHHHHHhcCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++.+..++... .. +|+ .|++..++|++........+.. .... +.. .+...+ |+++|++.++++..
T Consensus 117 ~~~~~~~~~~~--~~----~gd-~Vlv~~p~y~~~~~~~~~~g~~-~~~~---~~~~~~~~~~---d~~~l~~~l~~~~~ 182 (409)
T 4eu1_A 117 LRIGGDLLNRF--VA----NCN-RIYGPDVGYPNHESIFAKAGME-LTPY---SYYDPATKGL---NLAGMLECLDKAPE 182 (409)
T ss_dssp HHHHHHHGGGT--SS----SCC-EEEEESSCCTHHHHHHHHTTCE-EEEE---CCEETTTTEE---CHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHh--cC----CCC-EEEEeCCCcHhHHHHHHHcCCe-EEEE---EeecCcCCcC---cHHHHHHHHHhCCC
Confidence 99887655432 11 344 8888999986654433322221 1100 100 011122 89999999986444
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccc-cCCCCcce---eecccccc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASD-WEEVRPDM---VILGKALG 296 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~-~~~~~pdi---~s~sK~l~ 296 (470)
+++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+..+++ .||||.++
T Consensus 183 ~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 261 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG 261 (409)
T ss_dssp TCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS
T ss_pred CcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc
Confidence 566666544599999999 899999999999999999999999998876652 11111 11333444 38999998
Q ss_pred -CCCcceeEE---EecHH----HHhhcCcCCccCCCCCCHHHHHHHHHHHHHH-------h-hhhHHHHHHHHHHHHHHH
Q 012138 297 -GGVIPVSAV---LADKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVI-------R-DEKLAERSAHLGEELRQH 360 (470)
Q Consensus 297 -gG~~~ig~v---~~~~~----~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-------~-~~~~~~~~~~~~~~l~~~ 360 (470)
+|+ |+|++ +++++ +++.+.......+++.++++++++.++|+.. + .+.++++++++++++.+.
T Consensus 262 ~~G~-riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 262 LYGH-RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp CGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccC-CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 898 99995 56777 6555544333445667788888888877632 1 145667777888888888
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH-HcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
|++++. |..+....+.|.++.| ++. .. +++..|+ ++||.+.|+. ||+++ ..+++++++++++|++
T Consensus 341 L~~~g~--~~~~~~~~~~~~~~~~-~~~-----~~-~~~~~ll~~~gv~v~p~~----Ri~~~-~~~~~~i~~~~~~l~~ 406 (409)
T 4eu1_A 341 LKACGS--VHDWSHIERQVGMMAY-TGL-----TR-EQVELLRSEYHIYMTLNG----RAAVS-GLNSTNVEYVSQAIHN 406 (409)
T ss_dssp HHHTTC--CSCCHHHHHSCSSEEE-CCC-----CH-HHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHhcCC--CCCcceecCCceEEEE-eCC-----CH-HHHHHHHHcCCEEEcCCC----EEEEE-ecCHhhHHHHHHHHHH
Confidence 877521 1112233456777766 332 22 3455665 5699998863 77765 3567789999999998
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 407 ~l~ 409 (409)
T 4eu1_A 407 VTK 409 (409)
T ss_dssp HHC
T ss_pred HhC
Confidence 764
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=217.17 Aligned_cols=329 Identities=13% Similarity=0.078 Sum_probs=215.0
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHH-Hcccc--CCC-CC-CCcHHHHH----HHHhhhhCCCeE-EecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAE-KLTLS--SRA-FY-NDKFPVFA----ERLTSMFGYDMV-LPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~--~~~-~~-~~~~~~l~----~~l~~~~~~~~v-~~~~sGteA~ 145 (470)
.++|+.++ .++ +|++.+++.+++. .+... ... +. .+...+++ ++++++++.+.. +++++|++|+
T Consensus 25 ~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 25 KIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp SEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred ceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 35666544 232 8999999999885 33221 111 11 12234444 689998887764 4567889999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch--hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
+.+++++.. +|+ .|++..++|++..... ....+. .......+..++... .|+++|++++++.
T Consensus 99 ~~a~~~~~~---------~gd-~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~---~d~~~l~~~i~~~-- 162 (405)
T 2vi8_A 99 MAVYFTVLE---------HGD-TVLGMNLSHGGHLTHGSPVNFSGV-QYNFVAYGVDPETHV---IDYDDVREKARLH-- 162 (405)
T ss_dssp HHHHHHHCC---------TTC-EEEEECGGGTCCTTTTCTTSHHHH-HSEEEEECBCTTTCS---BCHHHHHHHHHHH--
T ss_pred HHHHHHhcC---------CCC-EEEEecccccchhcccchhhhccc-eeEEEecccccccCC---cCHHHHHHHHHhc--
Confidence 999998743 454 7777777754432211 111110 000000010001111 2899999999863
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Cccee--eccccccCCCc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMV--ILGKALGGGVI 300 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~gG~~ 300 (470)
++++|+++| ++. |...+ +++|.++|++||++||+||+|+ ++..+... ....+ .+|++ +++|+++|+.
T Consensus 163 ~~~~v~~~~-~~~-~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~~~~di~~~s~sK~~~g~~- 232 (405)
T 2vi8_A 163 RPKLIVAAA-AAY-PRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPVPYAHFVTTTTHKTLRGPR- 232 (405)
T ss_dssp CCSEEEECC-SSC-CSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCSTTTCSEEEEESSSTTCCCS-
T ss_pred CCeEEEEeC-CCC-CccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCccccCCEEEEeccccCCCCC-
Confidence 567888866 332 44444 9999999999999999999998 33322111 11111 35766 8899998665
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
. |++++++++++.+.......+++ .++..++++.++++.+.+ +++.++++++++++.+.|++++ +....
T Consensus 233 g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~ 305 (405)
T 2vi8_A 233 G-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG------FTLVS 305 (405)
T ss_dssp C-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGG
T ss_pred C-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC------CeEec
Confidence 5 99999999888776543333444 467777777788887654 5678888888999998888752 22221
Q ss_pred --ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCC----CCCHHHHHHHHHHHHHH
Q 012138 377 --GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPL----SISSNELQEGSKALHDV 440 (470)
Q Consensus 377 --~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~----~~t~e~i~~~~~~l~~~ 440 (470)
+.+.++++.+.... .+..++.+.|.++||.+.++ ..+++|++++. .++++++++++++|+++
T Consensus 306 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 306 GGTDNHLLLVDLRPQQ--LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp GSCSSSEEEEECGGGT--CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEccCCC--CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 35677777665321 25678999999999998764 25689999886 57899999999999999
Q ss_pred HhcccC
Q 012138 441 LELDLP 446 (470)
Q Consensus 441 l~~~~~ 446 (470)
++ ++.
T Consensus 384 ~~-~~~ 388 (405)
T 2vi8_A 384 LK-NVG 388 (405)
T ss_dssp HT-CTT
T ss_pred Hh-ccc
Confidence 98 764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=219.24 Aligned_cols=298 Identities=14% Similarity=0.228 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEEEcc
Q 012138 96 IMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVSCCG 174 (470)
Q Consensus 96 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~~~~ 174 (470)
+.+++.+.+....+ +..+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++..+
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~---------~gd-~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTADF----TLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIG---------AGD-EVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEEESS
T ss_pred HHHHHHHHHHcCCc----ccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CCC-EEEECCC
Confidence 77777777665432 234567899999999999999999999999999999876 32 444 8888999
Q ss_pred CccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
+|++........+.. ...++.+ |+++|++++++ ++++|+ ++||+|.+.+ +++
T Consensus 87 ~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~---~~n~~G~~~~----~~~ 143 (374)
T 3uwc_A 87 TFIASVGAIVQAGAT-------------PVLVDSENGYVIDPEKIEAAITD---KTKAIM---PVHYTGNIAD----MPA 143 (374)
T ss_dssp SCHHHHHHHHHTTCE-------------EEEECBCTTSSBCGGGTGGGCCT---TEEEEC---CBCGGGCCCC----HHH
T ss_pred ccHHHHHHHHHcCCE-------------EEEEecCCCCCcCHHHHHHhCCC---CceEEE---EeCCcCCcCC----HHH
Confidence 987765443322221 1223322 78889888875 788887 4889999987 999
Q ss_pred HHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc----ccccC-CCcceeEEEec-HHHHhhcCcCC----
Q 012138 250 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPGE---- 319 (470)
Q Consensus 250 l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s----K~l~g-G~~~ig~v~~~-~~~~~~~~~~~---- 319 (470)
|.++|++||+++|+||+|+.+.. +.....+..+|++++| |.+++ | ..|+++++ +++.+.+....
T Consensus 144 i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g--~~g~~~~~~~~~~~~~~~~~~~~~ 217 (374)
T 3uwc_A 144 LAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS--DAGVIITHSDEYAEKLRLYRNHGL 217 (374)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS--CCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc--eeEEEEeCCHHHHHHHHHHHhcCc
Confidence 99999999999999999983211 2223344446887666 99987 6 46777764 45655443211
Q ss_pred --------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--hCCCceEEEeccceeEEEEeccC
Q 012138 320 --------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVRGRGLFNAVEFDKT 389 (470)
Q Consensus 320 --------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~--~~p~~~~~~~~~g~~~~~~~~~~ 389 (470)
.+.++..+++.++++...++.+ +++.++.+++.+++.+.|.++.. ..| .... .....++.+.+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 293 (374)
T 3uwc_A 218 INRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVP-VRRE-GVYHVFHIYVLRVK 293 (374)
T ss_dssp EETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECC-CCCT-TEECCCSSEEEEET
T ss_pred cccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEec-cCCC-CCceeeEEEEEEcC
Confidence 2233445677766665544433 44667777888888887776531 111 0000 01122222222221
Q ss_pred CCchhHHHHHHHHHHcCceeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 390 ALPVSAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..++.+.|.++||.+.++. .+.+|++++..+|++||++++++|+++++
T Consensus 294 ----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~ 369 (374)
T 3uwc_A 294 ----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL 369 (374)
T ss_dssp ----THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 57789999999999987654 17899999999999999999999999998
Q ss_pred ccc
Q 012138 443 LDL 445 (470)
Q Consensus 443 ~~~ 445 (470)
+.
T Consensus 370 -~~ 371 (374)
T 3uwc_A 370 -EK 371 (374)
T ss_dssp -TT
T ss_pred -hh
Confidence 53
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=221.68 Aligned_cols=306 Identities=13% Similarity=0.154 Sum_probs=207.4
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEE
Q 012138 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~ 171 (470)
++++.+++.+.+....+. ...+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++
T Consensus 35 ~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~---------~gd-~vl~ 101 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWIS---SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIG---------PGD-EVIV 101 (391)
T ss_dssp CSSHHHHHHHHHHHTCCS---SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCC---------TTC-EEEE
T ss_pred CHHHHHHHHHHHHcCCcc---CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEE
Confidence 377888888887764322 134567899999999999999999999999999999977 32 344 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++........+..... .+..++...+ |+++|++++++ ++++|++ .||+|.+.+ +++|.
T Consensus 102 ~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~---d~~~l~~~~~~---~~~~v~~---~n~tG~~~~----~~~i~ 164 (391)
T 3dr4_A 102 PSLTYIASANSVTYCGATPVL----VDNDPRTFNL---DAAKLEALITP---RTKAIMP---VHLYGQICD----MDPIL 164 (391)
T ss_dssp ESSSCTHHHHHHHHTTCEEEE----ECBCTTTCSB---CGGGSGGGCCT---TEEEECC---BCGGGCCCC----HHHHH
T ss_pred CCCchHHHHHHHHHCCCEEEE----EecCccccCc---CHHHHHHhcCC---CceEEEE---ECCCCChhh----HHHHH
Confidence 999988765444333221111 1111111122 78888888865 7888873 679999887 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEEec-HHHHhhcCcC-------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG------- 318 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~~~-~~~~~~~~~~------- 318 (470)
++|++||++||+||+|+ |....+. ..+..+|+.++| |++++| +.|+++.+ +++.+.+...
T Consensus 165 ~l~~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~ 237 (391)
T 3dr4_A 165 EVARRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDP 237 (391)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCT
T ss_pred HHHHHcCCEEEEECcccccceECCe-----eecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCC
Confidence 99999999999999998 3322221 122234666555 889775 67787765 4565544321
Q ss_pred -------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE-----EeccceeEEEEe
Q 012138 319 -------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEF 386 (470)
Q Consensus 319 -------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~-----~~~~g~~~~~~~ 386 (470)
..+..+..+++.++++...++.+ +++.++.+++.+++++.|.+++.. .... ....+.++.+.+
T Consensus 238 ~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~~~~~~i~~ 312 (391)
T 3dr4_A 238 NRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARLGNR---VTKPHVALTGRHVFWMYTVRL 312 (391)
T ss_dssp TSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGGTTS---EECCCCCTTSCCCCSSEEEEE
T ss_pred CCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCcc---ccCcCCCCCCcceeEEEEEEE
Confidence 11223556777777766655544 346777888888888888776211 1111 012233455555
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH------------------------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
... .+.+..++.+.|.++||.+.++. .+.+|+++...+|+|||++++++|++++
T Consensus 313 ~~~-~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 313 GEG-LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CSS-CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred CCc-cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 431 02367899999999999987653 3579999999999999999999998765
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=217.20 Aligned_cols=302 Identities=15% Similarity=0.182 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~ 173 (470)
|++.+++.+.+....+ +..+...++++.++++++.+++++++||++|++.+++.+.. .+|+ .|++..
T Consensus 16 ~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~--------~~gd-~Vi~~~ 82 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQY----ILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGV--------GPGD-EVITPG 82 (367)
T ss_dssp HHHHHHHHHHHHHCCC----SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTC--------CTTC-EEEEES
T ss_pred HHHHHHHHHHHhcCCc----cCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCC--------CCcC-EEEECC
Confidence 4555666666554322 23456789999999999999999999999999999987721 1454 788888
Q ss_pred cCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 174 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
++|++........+.... +.+..++...+ |+++|++++++ ++++|+ + +|++|...+ +++|.++
T Consensus 83 ~~~~~~~~~~~~~G~~~~----~~~~~~~~~~~---d~~~l~~~i~~---~~~~v~--~-~~~~G~~~~----~~~i~~l 145 (367)
T 3nyt_A 83 FTYVATAETVALLGAKPV----YVDIDPRTYNL---DPQLLEAAITP---RTKAII--P-VSLYGQCAD----FDAINAI 145 (367)
T ss_dssp SSCTHHHHHHHHTTCEEE----EECBCTTTCSB---CGGGTGGGCCT---TEEEEC--C-BCGGGCCCC----HHHHHHH
T ss_pred CccHHHHHHHHHcCCEEE----EEecCCccCCc---CHHHHHHhcCc---CCcEEE--e-eCCccChhh----HHHHHHH
Confidence 887765444333322111 11111111222 78999988865 788888 3 678998887 9999999
Q ss_pred HHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccC-CCcceeEEEe-cHHHHhhcCcCC-------
Q 012138 254 CSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLA-DKEVMLCIQPGE------- 319 (470)
Q Consensus 254 ~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~g-G~~~ig~v~~-~~~~~~~~~~~~------- 319 (470)
|++||++||+||+|+ |..+.|... +...|++++| |.+++ |. .|+++. ++++.+.++...
T Consensus 146 a~~~~~~li~D~a~~~g~~~~~~~~-----~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~ 218 (367)
T 3nyt_A 146 ASKYGIPVIEDAAQSFGASYKGKRS-----CNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRR 218 (367)
T ss_dssp HHHTTCCBEEECTTTTTCEETTEET-----TSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHcCCEEEEECccccCCeECCeec-----cCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcC
Confidence 999999999999998 443333322 2222777665 99987 73 677776 577766554321
Q ss_pred -----ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchh
Q 012138 320 -----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 394 (470)
Q Consensus 320 -----~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 394 (470)
.+.++..+++.++++.+.++.+ +++.++.+++.+++.+.|.++....|...........++.+.+. +
T Consensus 219 ~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 290 (367)
T 3nyt_A 219 YHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD------N 290 (367)
T ss_dssp TEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS------S
T ss_pred ceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC------C
Confidence 1356778999999988888765 34667788888889998888643222100001111222333222 4
Q ss_pred HHHHHHHHHHcCceeccCC------------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 395 AYDICLKMKERGILAKPTH------------------------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 395 ~~~~~~~l~~~Gv~~~~~~------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
..++.+.|.++||.+.+.. ...+|+.....+|++|++++++.|++.
T Consensus 291 ~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 291 RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999876432 246899988899999999999998765
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=212.53 Aligned_cols=308 Identities=14% Similarity=0.122 Sum_probs=207.9
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEE
Q 012138 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~ 171 (470)
.|++.+++.++++...+ ..+..+...++++.++++++.+..++++||++|++.+++.+ .. +|+ .|++
T Consensus 16 ~~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~---------~gd-~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVG---------PGT-EVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEE
T ss_pred CHHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-EEEE
Confidence 38999999999876322 12234667899999999998877777778899999999876 32 454 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++........+... . +.+..++...+ |+++|++++++ ++++|+ | +||+|.+.+ +++|.
T Consensus 84 ~~~~~~~~~~~~~~~g~~~-~---~v~~~~~~~~~---d~~~l~~~i~~---~~~~v~--~-~n~tG~~~~----l~~i~ 146 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVT-V---PVDVDAATYNL---DPEAVAAAVTP---RTKVIM--P-VHMAGLMAD----MDALA 146 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEE-E---EECBCTTTCCB---CHHHHHHHCCT---TEEEEC--C-BCGGGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEE-E---EEecCCCcCCC---CHHHHHHhcCc---CceEEE--E-eCCccCcCC----HHHHH
Confidence 9999877654333222211 1 11111111122 89999999865 788877 4 889999987 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH-H--HhhcCcCC------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE-V--MLCIQPGE------ 319 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~-~--~~~~~~~~------ 319 (470)
++|++||++||+||+|+ |..+.|.. ...++ ..++.+|| |+++|| ++|+++++++ + ++.+....
T Consensus 147 ~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (388)
T 1b9h_A 147 KISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPR 221 (388)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred HHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999998 44343332 22233 23566777 666664 7899998775 5 45442110
Q ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-------ccceeEE
Q 012138 320 ---------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-------GRGLFNA 383 (470)
Q Consensus 320 ---------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-------~~g~~~~ 383 (470)
.+.++..++++++++...++.++ +..++.+++++++.+.|+++ | .+.... ..+.+++
T Consensus 222 ~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~ 294 (388)
T 1b9h_A 222 DDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----D-GVVPQGGDVRADRNSHYMAM 294 (388)
T ss_dssp TCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----T-TCEECCCCTTCCBCCCSEEE
T ss_pred cCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----C-CccccCCCcCCCccceEEEE
Confidence 12233467777776665555443 35666777788888777653 2 232221 2356667
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCCC---------------------------------CEEEEecCCCC-CHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTHD---------------------------------TIVRLTPPLSI-SSNE 429 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---------------------------------~~iR~~~~~~~-t~e~ 429 (470)
+.++... +.+..++.+.|.++||.+.++.. +.+||++...+ |++|
T Consensus 295 ~~~~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~ed 373 (388)
T 1b9h_A 295 FRIPGLT-EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPE 373 (388)
T ss_dssp EECTTCC-HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHH
T ss_pred EEeCCcC-cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHH
Confidence 7664311 12577899999999999865421 25899988888 9999
Q ss_pred HHHHHHHHHHHHh
Q 012138 430 LQEGSKALHDVLE 442 (470)
Q Consensus 430 i~~~~~~l~~~l~ 442 (470)
|+++++.|+++++
T Consensus 374 i~~~~~~l~~~~~ 386 (388)
T 1b9h_A 374 LHATAEIIADAVA 386 (388)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=216.06 Aligned_cols=324 Identities=15% Similarity=0.138 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHH-HccccC--CCCCCC-----cHHHHH-HHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAE-KLTLSS--RAFYND-----KFPVFA-ERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~-~~~~~~--~~~~~~-----~~~~l~-~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.+|+|++++.+++. .+...+ ..++.. ..++++ +++++++|.+.+.+ ++||++|++.+++++++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~------- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMS------- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcC-------
Confidence 48999999988875 332211 111111 225566 88999999888777 99999999999998765
Q ss_pred CCCCCcEEEEEccCccccccchh--cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
+|+ .|++..++|++...... ...+. .+...+.+..++... .|+++|++++++. ++++|+++..+||++.
T Consensus 130 --~Gd-~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~---~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~ 200 (447)
T 3h7f_A 130 --PGE-RLLGLDLANGGHLTHGMRLNFSGK-LYENGFYGVDPATHL---IDMDAVRATALEF--RPKVIIAGWSAYPRVL 200 (447)
T ss_dssp --TTC-EEEEECGGGTCCGGGTCTTSHHHH-SSEEEEECCCTTTCS---CCHHHHHHHHHHH--CCSEEEEECSSCCSCC
T ss_pred --CCC-EEEecCcccccccchhhhhhhcCC-eeEEEEcCcCcccCC---cCHHHHHHHHHhc--CCeEEEEcCCCCCCcc
Confidence 465 78888888766221111 11110 011000111111112 2899999999754 5667777443666554
Q ss_pred ccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcC
Q 012138 240 IIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQ 316 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~ 316 (470)
+ +++|+++|++||++||+||+|. |+.+.|...... . ..|++ +++|+++ |. +.|++++++++++.+.
T Consensus 201 --~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~--~~di~~~s~sK~l~-G~-~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 --D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-P--HADVVSTTVHKTLG-GG-RSGLIVGKQQYAKAIN 269 (447)
T ss_dssp --C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T--TCSEEEEESSGGGC-CC-SCEEEEECGGGHHHHH
T ss_pred --C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-C--CCcEEEecCCcCCC-CC-CeEEEEECHHHHHHHh
Confidence 4 9999999999999999999985 554444332111 1 12554 7789986 56 8899999998888776
Q ss_pred cCCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEeccCC
Q 012138 317 PGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTA 390 (470)
Q Consensus 317 ~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~~ 390 (470)
......+++ .+...++++.+++..+.+ +.+.+++.++++++.+.|++.....+ .+..+. ..+.++++.+....
T Consensus 270 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 348 (447)
T 3h7f_A 270 SAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKA-GVSVVSGGTDVHLVLVDLRDSP 348 (447)
T ss_dssp HHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHT-TCEEGGGSCSSSEEEEECTTSS
T ss_pred hhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCC-CeEEecCCCCCCEEEEEcCCCC
Confidence 543334444 334445555556655433 34777788888888888876511111 122222 24455666554322
Q ss_pred CchhHHHHHHHHHHcCceec----cC------CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhcccC
Q 012138 391 LPVSAYDICLKMKERGILAK----PT------HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~Gv~~~----~~------~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+...+.+.|.++||++. |. .++.+|++++.. ++++|+++++++|.+++. +..
T Consensus 349 --~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~-~~~ 415 (447)
T 3h7f_A 349 --LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALA-TGS 415 (447)
T ss_dssp --CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHH-SGG
T ss_pred --CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHh-ccC
Confidence 256667777777799987 33 357799987765 789999999999999998 653
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-24 Score=205.80 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=192.2
Q ss_pred HHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc---ccCCcccccCCC
Q 012138 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS---MSCDNEAIRGFG 197 (470)
Q Consensus 121 ~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~ 197 (470)
++++.++++++.+..++++||++|++.+++.+.. +|+ .|++..++|++....... ..+
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~---------~g~-~v~~~~~~~~~~~~~~~~~~~~~g--------- 62 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK---------AGD-HLISDDCLYGCTHALFEHQLRKFG--------- 62 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESCCCHHHHHHHHTHHHHTT---------
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---------CCC-EEEEcCCCcchHHHHHHHHHHhcC---------
Confidence 5788888888888888888899999999987643 454 788889998775433211 111
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh-cCcEEEEeccccCCcccCCc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~-~gillI~Dev~~g~g~~G~~ 276 (470)
..+..++..|+++|++++++ ++++|++++++||+|.+.| +++|.++|++ ||+++|+||+|+.+. ....
T Consensus 63 ---~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~-~~~~ 131 (331)
T 1pff_A 63 ---VEVDFIDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPI-LTNP 131 (331)
T ss_dssp ---CEEEEECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHH-HCCG
T ss_pred ---CEEEEeCCCCHHHHHHhhcC---CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccc-cCCh
Confidence 11345556689999988875 7899999888999999997 9999999999 999999999998321 1111
Q ss_pred cccccCCCCcceeeccccccC-CCcc-eeEEEecH-HHHhhcCcCCcc-CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGG-GVIP-VSAVLADK-EVMLCIQPGEHG-STFGGNPLASAVAIASLDVIRDEKLAERSAH 352 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~g-G~~~-ig~v~~~~-~~~~~~~~~~~~-~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 352 (470)
. .++.+..+.+++|.+++ |. | +|++++++ ++++.+.+.... .+.+.+++.++++.++++.+.. ..++...
T Consensus 132 --~-~~~~d~~~~s~~K~~~~~~~-r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 205 (331)
T 1pff_A 132 --L-DLGVDIVVHSATKYINGHTD-VVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAE 205 (331)
T ss_dssp --G-GGTCSEEEEETTTTTSSSSS-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred --h-hcCCcEEEEECccccCCCCC-ceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHHHHH
Confidence 1 23443344589999984 55 7 78999998 898888766555 5667888888877777765432 2223333
Q ss_pred HHHHHHHHHHHHHh----------hCCCceE----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC------
Q 012138 353 LGEELRQHLFKIQQ----------QFPNYVK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------ 412 (470)
Q Consensus 353 ~~~~l~~~L~~l~~----------~~p~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------ 412 (470)
+...+.+.|++... ..| .+. ..++.|.++.+.+. +..++.+.|.++||++.+.
T Consensus 206 ~~~~~~~~l~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~~~~~s~g~~~ 278 (331)
T 1pff_A 206 NAQKVAEFLHEHKAVKKVYYPGLPDHP-GHEIAKKQMKMFGSMIAFDVD------GLEKAKKVLDNCHVVSLAVSLGGPE 278 (331)
T ss_dssp HHHHHHHHHHHCTTCCCEECTTSTTST-THHHHHHHCSSCCSEEEEECS------SHHHHHHHHHTCSSSEECSSCCSSS
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCc-cHHHHHhhCCCCceEEEEEEC------CHHHHHHHHHhCCCceeccCCCCcc
Confidence 33334344433210 001 000 01245778888664 3456788888889965322
Q ss_pred ------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 413 ------------------------HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 413 ------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.++++|++++..+++++++++++.|+++
T Consensus 279 sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 279 SLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 1579999999999999999999988764
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=216.47 Aligned_cols=314 Identities=13% Similarity=0.086 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHHHccc--cCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTL--SSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
.||.+.+++.++++.+.. ....| ..+...+++++++++++.+..++++||++|+..+++++.. ++++.
T Consensus 19 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~---------~gd~~ 89 (357)
T 3lws_A 19 HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSD---------ETDNR 89 (357)
T ss_dssp SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH---------HHTCC
T ss_pred CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhh---------cCCCc
Confidence 567788888777765321 11112 2366889999999999988888889999999999998766 34532
Q ss_pred EEEEccCccccccc---hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC-ccccCCh
Q 012138 169 IVSCCGCFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA-GVIIPPD 244 (470)
Q Consensus 169 ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~-G~~~~~~ 244 (470)
+|+.++.+|..... .....+..... .+ .+...+ |+++|+++. ++++|++++++||+ |.++ +.
T Consensus 90 ~vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~--~~~~~~---d~~~l~~~~-----~~~~v~~~~p~np~~G~~~-~~ 155 (357)
T 3lws_A 90 TVAYHPLCHLEIHEQDGLKELHPIETIL---VG--AADRLM---TLDEIKALP-----DIACLLLELPQREIGGVAP-AF 155 (357)
T ss_dssp EEEECTTCHHHHSSTTHHHHHSSCEEEE---CS--CTTSCC---CHHHHHTCC-----SCSEEEEESSBGGGTSBCC-CH
T ss_pred EEEecccceeeeeccchhhhccCcEEEE---ec--CCCCCc---CHHHHhcCc-----CcceEEEEcccccCCceeC-CH
Confidence 34444444543322 11111111110 01 000112 788888761 37788887779997 8888 89
Q ss_pred hhHHHHHHHHHhcCcEEEEecccc-C-CcccCCcc-ccccCCCCcc--eeeccccccCCCcceeEEEecHHHHhhcCcCC
Q 012138 245 GYLKAVRDLCSKYNILMIADEIQS-G-LARSGRML-ASDWEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGE 319 (470)
Q Consensus 245 ~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~-~~~~~~~~pd--i~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~ 319 (470)
+++++|.++|++||++||+||+|. + .+..|... .+. . ..| +.++||++++.. . |++++++++++.+....
T Consensus 156 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~--~~d~~~~s~sK~~~~~~-g-g~~~~~~~~~~~~~~~~ 230 (357)
T 3lws_A 156 SELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G--LFDSIYISFYKGLGGIA-G-AILAGPAAFCQTARIWK 230 (357)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T--TSSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h--cCCEEEEeccccCCCCc-e-EEEEcCHHHHHHHHHHH
Confidence 999999999999999999999986 1 11112111 011 1 124 449999996543 3 88999999888775321
Q ss_pred --ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE--EeccceeEEEEeccCCCchhH
Q 012138 320 --HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE--VRGRGLFNAVEFDKTALPVSA 395 (470)
Q Consensus 320 --~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~--~~~~g~~~~~~~~~~~~~~~~ 395 (470)
.+.+.......++++.++|+... +. .++..++++++.+.|+++ | .+.. .++.+.++++.+.... ..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~~~-~~~~ 302 (357)
T 3lws_A 231 RRYGGDLISLYPYIVSADYYYELRK-DR-MGQYYEQAKQLAEQFNAL----P-GVHTTPEVPVSNMFHLHFDGQA-ADIS 302 (357)
T ss_dssp HHTTCCCSCCHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHTS----T-TEEEESSSCSSSEEEEEEESCH-HHHH
T ss_pred HHhcCCcccchHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhC----C-CCeeccCCCcceEEEEEecCCh-HHHH
Confidence 22222223333444556666432 22 334566677777777653 2 3433 2356677777665421 0136
Q ss_pred HHHHHHHHHcCceeccCC-----CCEEEEecCC---CCCHHHHHHHHHHHHHHH
Q 012138 396 YDICLKMKERGILAKPTH-----DTIVRLTPPL---SISSNELQEGSKALHDVL 441 (470)
Q Consensus 396 ~~~~~~l~~~Gv~~~~~~-----~~~iR~~~~~---~~t~e~i~~~~~~l~~~l 441 (470)
.++.+.|.++||++.++. ..++|++... ..+++++++++++|.+++
T Consensus 303 ~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 303 PKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 788899999999998763 2388998653 368999999999998875
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=215.52 Aligned_cols=334 Identities=10% Similarity=0.020 Sum_probs=210.7
Q ss_pred eEEeccCCcccccCCC--CCHHHHHHHHHHH-HHc---cccCCCCCCCcHHHHHHHHhhhhC----CCe--EEecCChhH
Q 012138 76 KYLDFLSAYSAVNQGH--CHPKIMKALQEQA-EKL---TLSSRAFYNDKFPVFAERLTSMFG----YDM--VLPMNTGAE 143 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~---~~~~~~~~~~~~~~l~~~l~~~~~----~~~--v~~~~sGte 143 (470)
.+|||..|....+.|. .++.|.+++. .+ +.. .+.+..+..++++.+++++....+ .++ ++.|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 4578887753333332 4677777766 43 221 122223344566777777654433 233 689999999
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC-CCCeeeecCCCHHHHHHHHHhcC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVDFGDITALEKIFKESG 222 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~Le~~l~~~~ 222 (470)
|+..+++++..+ .+ +.|++.+|+|.+........+... .. .++ ..+...+ |+++|++.+++.
T Consensus 109 al~~~~~~l~~~--------~~-d~Vlv~~P~y~~~~~~~~~~g~~~-~~---v~~~~~~~~~~---d~~~l~~~l~~~- 171 (405)
T 3k7y_A 109 AIFVLLEFLKML--------NV-ETLYVTNPPYINHVNMIESRGFNL-KY---INFFDYNLIDI---NYDLFLNDLRNI- 171 (405)
T ss_dssp HHHHHHHHHHTT--------TC-CEEEEESSCCHHHHHHHHTTTCEE-EE---ECCEETTTTEE---CHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhc--------CC-CEEEEeCCCCHhHHHHHHHcCCeE-EE---EeccccccCCc---CHHHHHHHHHhC-
Confidence 999999877642 13 589999999976654443332211 10 011 0111233 899999999763
Q ss_pred CCeEEEEEcc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCC---ccccccC-CCCcc---eeecccc
Q 012138 223 DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR---MLASDWE-EVRPD---MVILGKA 294 (470)
Q Consensus 223 ~~~~~vi~ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~---~~~~~~~-~~~pd---i~s~sK~ 294 (470)
.+++++++++ .|||||.++ +.+.+++|.++|++||+++|+||+|.+|.+.+. ......+ ..... +.||||.
T Consensus 172 ~~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 172 PNGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKN 250 (405)
T ss_dssp CSSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTT
T ss_pred CCCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCcc
Confidence 2456777776 489999999 999999999999999999999999998865431 1111110 11122 3499999
Q ss_pred cc-CCCcceeEEEe---cHHHHhhcCcC---CccCCC-CCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHHHHHH
Q 012138 295 LG-GGVIPVSAVLA---DKEVMLCIQPG---EHGSTF-GGNPLASAVAIASLDVI------RD--EKLAERSAHLGEELR 358 (470)
Q Consensus 295 l~-gG~~~ig~v~~---~~~~~~~~~~~---~~~~t~-~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~~~l~ 358 (470)
++ +|+ |+||+++ ++++++.+... ....++ +.+.++++++.++|+.- .+ ..++++++++++.+.
T Consensus 251 ~~l~Gl-RiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 251 MSLYGE-RAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF 329 (405)
T ss_dssp SCCTTT-TEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccc-cceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999 9999853 66665544211 112233 35567777666666431 11 234455677777777
Q ss_pred HHHH----HHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 359 QHLF----KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 359 ~~L~----~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+.|+ +++. |..+....++|.|+.| +..+ . +++++|.++||.+.|++ ||++. ..++++|++++
T Consensus 330 ~~L~~~~~~~g~--~~~~~~~~p~gg~f~~-~~l~-----~-~~~~~L~~~gV~v~p~~----Ris~a-~~~~~~i~~~~ 395 (405)
T 3k7y_A 330 NKLETYQKKYNL--NYDWNVYKKQRGLFSF-VPLL-----A-KIAEHLKTHHIYIINNG----RINVS-GITKNNVDYIA 395 (405)
T ss_dssp HHHHHHGGGGTC--CCCGGGGSSCCSSEEE-CGGG-----G-GGTTTTTTTTEECCTTS----EEEGG-GCCTTHHHHHH
T ss_pred HHHHhhhhhcCC--CCCCccccCCceEEEe-cCCC-----H-HHHHHHHHCCEeecCCC----eEEEe-ccCHHHHHHHH
Confidence 7776 5421 1112334567777777 3321 1 44567766699999874 99843 35788999999
Q ss_pred HHHHHHHhcc
Q 012138 435 KALHDVLELD 444 (470)
Q Consensus 435 ~~l~~~l~~~ 444 (470)
++|.++++ +
T Consensus 396 ~~i~~~~~-~ 404 (405)
T 3k7y_A 396 DKICLSLS-Q 404 (405)
T ss_dssp HHHHHHHH-C
T ss_pred HHHHHHHh-h
Confidence 99999987 5
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=212.99 Aligned_cols=329 Identities=17% Similarity=0.201 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.++++.+++.+.++...+.. ..+...++++.++++++.+++++++||++|++.+++.+. +| +.|++
T Consensus 30 ~p~~~~~a~~~~~~~~~y~~---~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~----------~g-d~Vlv 95 (424)
T 2po3_A 30 DRARLYERLDRALDSQWLSN---GGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG----------LT-GEVIM 95 (424)
T ss_dssp CHHHHHHHHHHHHHHTCCSS---SCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT----------CC-SEEEE
T ss_pred ChHHHHHHHHHHHhcCCccc---CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----------CC-CEEEE
Confidence 46789999988887532111 134578899999999999999999999999999998763 34 48899
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++...... ..+..... .+..++...+ |+++|++++++ ++++|++. +|+|.+.+ +++|.
T Consensus 96 ~~~~~~~~~~~~~-~~G~~~~~---v~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~---~~tG~~~~----l~~i~ 158 (424)
T 2po3_A 96 PSMTFAATPHALR-WIGLTPVF---ADIDPDTGNL---DPDQVAAAVTP---RTSAVVGV---HLWGRPCA----ADQLR 158 (424)
T ss_dssp ESSSCTHHHHHHH-HTTCEEEE---ECBCTTTSSB---CHHHHGGGCCT---TEEEEEEE---CGGGCCCC----HHHHH
T ss_pred CCCccHHHHHHHH-HcCCEEEE---EecCCCcCCc---CHHHHHHhhCc---CCcEEEEE---CCCCCcCC----HHHHH
Confidence 9999877654332 22211111 1111111112 78999888865 78888864 37888776 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--ecc--ccccCCCcceeEEEec-HHHHhhcCcCCc-----
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH----- 320 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~s--K~l~gG~~~ig~v~~~-~~~~~~~~~~~~----- 320 (470)
++|++||++||+||+|+ |+.+.|..+ +..+|++ +|+ |.++| . ++|+++++ +++++.+.....
T Consensus 159 ~la~~~~~~li~Dea~~~g~~~~~~~~-----~~~~di~~~S~sk~K~l~~-~-~~G~~v~~~~~l~~~l~~~~~~~~~~ 231 (424)
T 2po3_A 159 KVADEHGLRLYFDAAHALGCAVDGRPA-----GSLGDAEVFSFHATKAVNA-F-EGGAVVTDDADLAARIRALHNFGFDL 231 (424)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEET-----TSSSSEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHHBTTTTC
T ss_pred HHHHHcCCEEEEECccccCCeECCeec-----ccccCEEEEeCCCCCCccC-C-CCeEEEeCCHHHHHHHHHHHhcCccc
Confidence 99999999999999999 776555322 1123555 555 77776 4 99999998 788776543211
Q ss_pred -------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccc-----eeEEEEec
Q 012138 321 -------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRG-----LFNAVEFD 387 (470)
Q Consensus 321 -------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g-----~~~~~~~~ 387 (470)
+.++..++++++++...++.+ +.+.++.+++.+++.+.|.++ | .+.... +.| .++.+.+.
T Consensus 232 ~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~i~~~ 304 (424)
T 2po3_A 232 PGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL----P-GVLVADHDRHGLNNHQYVIVEID 304 (424)
T ss_dssp TTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC----T-TEEECCGGGGSCCCCCCEEEEEC
T ss_pred cccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----C-CccccCCCCCCccccEEEEEEEC
Confidence 112234566766666555443 235566666666666666442 2 233322 222 33434443
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCCC-------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTHD-------------------------TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------------~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
....+.+..++.+.|.++||.+.+... ..+|+.+...+|++|+++++++|.++++
T Consensus 305 ~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~ 384 (424)
T 2po3_A 305 EATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT 384 (424)
T ss_dssp HHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 200002577899999999999876311 1277777789999999999999999887
Q ss_pred cccCCCCC------CCCCCCCCCCCccccc
Q 012138 443 LDLPKMRK------PKPADAPATPCHRCGR 466 (470)
Q Consensus 443 ~~~~~~~~------~~~~~~~~~~~~~~~~ 466 (470)
+..+..+ ..+..+|.+..-.||+
T Consensus 385 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (424)
T 2po3_A 385 -RGRELTARHRDTAPAPLAAPQTSTPTIGR 413 (424)
T ss_dssp -HHHHHHHHHHC------------------
T ss_pred -hhHHHhhhhccCCCCcccCCCCCCCcccc
Confidence 6543221 1123336555555654
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=211.23 Aligned_cols=312 Identities=14% Similarity=0.143 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHH-cccc--CCCC-----CCCcHHH-HHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEK-LTLS--SRAF-----YNDKFPV-FAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~--~~~~-----~~~~~~~-l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.||+|.+++.+++.. +... ...+ ..+...+ .+++++++++.+.. +++++|++|++.+++.+..
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~------- 114 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQ------- 114 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcC-------
Confidence 689999999998843 2111 1111 1122233 33678888887654 4467889999999987754
Q ss_pred CCCCCcEEEEEccCccccccchh--cccCCcccccCCCCCCCCeeeec-----CCCHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLPGHLKVD-----FGDITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|+ .|++..++|++...... ...+.... ...++ ..|+++|+++++++ ++++|++++.+
T Consensus 115 --~gd-~v~~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~ 179 (420)
T 3gbx_A 115 --PGD-TVLGMNLAQGGHLTHGSPVNFSGKLYN----------IVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSA 179 (420)
T ss_dssp --TTC-EEEEEEEC------------CHHHHSE----------EEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTT
T ss_pred --CCC-EEEecchhhcceeccchhhhhccccee----------EEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCc
Confidence 455 67777777544221111 11110000 01111 13899999999874 57888875535
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceee--ccccccCCCcceeEEEecH--
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADK-- 309 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s--~sK~l~gG~~~ig~v~~~~-- 309 (470)
++ ...+ +++|.++|++||++||+||+|+ |+.+.|..... .. .+|+++ +||+++ |. +.|++++++
T Consensus 180 ~~--~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~-~gg~~~~~~~~ 248 (420)
T 3gbx_A 180 YS--GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GP-RGGLILAKGGD 248 (420)
T ss_dssp CC--SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SC-SCEEEEESSCC
T ss_pred cC--CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CC-CceEEEEcCCc
Confidence 54 4565 9999999999999999999986 55444433211 11 267775 779997 43 568899887
Q ss_pred -HHHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeE
Q 012138 310 -EVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIR-D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFN 382 (470)
Q Consensus 310 -~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~-~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~ 382 (470)
++.+.+......++++ .+...++++.+++..+. + +++.++++++++++.+.|.+. .+..+. ..+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g~~~~~~~~~~~~~ 322 (420)
T 3gbx_A 249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR------GYKVVSGGTENHLF 322 (420)
T ss_dssp HHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEGGGSCSSSEE
T ss_pred HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc------CCeeccCCCCCeEE
Confidence 7777765443333333 33444444444554432 2 456778888888888888773 233222 356677
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceecc-------C---CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhccc
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKP-------T---HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~---~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++.+.... .+...+.+.|.++||++.+ + ..+.+||+++.. .+++++++++++|+++++ +.
T Consensus 323 ~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~ 396 (420)
T 3gbx_A 323 LLDLVDKN--LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLD-NI 396 (420)
T ss_dssp EEECGGGT--CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred EEEcCCCC--CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHh-Cc
Confidence 77664322 2567788889889999876 2 245699998755 568999999999999998 64
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=227.57 Aligned_cols=310 Identities=12% Similarity=0.102 Sum_probs=200.8
Q ss_pred cCCCCCHHHHHHHHHH----HHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCC
Q 012138 88 NQGHCHPKIMKALQEQ----AEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFS 163 (470)
Q Consensus 88 ~lG~~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~ 163 (470)
+.+..+|.|.+++... .+...+.+..+..+.+.++++++++++|.++++++++|++|+..+++ +..
T Consensus 100 ~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~--------- 169 (464)
T 1ibj_A 100 PFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIK--------- 169 (464)
T ss_dssp TTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSC---------
T ss_pred CCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhC---------
Confidence 4555666676665432 11111212123345688999999999999999999999999987775 221
Q ss_pred CCCcEEEEEccCccccccch---hcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 164 IDEAIIVSCCGCFHGRTLAA---ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 164 ~g~~~ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
+|+ .|++..+.|++..... ....+ ..+..++.+|+++|++++++ ++++|++++++||+|.+
T Consensus 170 ~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G------------~~v~~v~~~d~~~l~~~i~~---~tk~v~l~~p~NptG~v 233 (464)
T 1ibj_A 170 NGE-EIVAGDDVYGGSDRLLSQVVPRSG------------VVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQI 233 (464)
T ss_dssp TTC-EEEEESSCCHHHHHHHHHTSGGGT------------CEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCC
T ss_pred CCC-EEEEECCCchhHHHHHHHHHHHcC------------CEEEEeCCCCHHHHHHHhcc---CceEEEEeCCCCCCCEe
Confidence 455 7888999987653211 11111 12356677799999999875 79999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCccee--eccccccC--CCcceeEEEec-HHHHhh
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDMV--ILGKALGG--GVIPVSAVLAD-KEVMLC 314 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~~-~~~~~~ 314 (470)
++ +++|.++|++||+++|+||+|+. |..+ ..+ ++ .|++ +++|.++| |+ ++|+++++ +++++.
T Consensus 234 ~~----l~~i~~la~~~gi~livDea~~~----g~~~~~~~-~~--~div~~S~sK~~~g~~Gl-~~G~l~~~~~~l~~~ 301 (464)
T 1ibj_A 234 SD----IRKISEMAHAQGALVLVDNSIMS----PVLSRPLE-LG--ADIVMHSATKFIAGHSDV-MAGVLAVKGEKLAKE 301 (464)
T ss_dssp CC----HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGG-TT--CSEEEEETTTTTTCSSCC-CCEEEEECSHHHHHH
T ss_pred ec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhh-cC--CEEEEECCcccccCCCCC-cEEEEEEChHHHHHH
Confidence 97 99999999999999999999973 2111 112 33 4655 78999985 87 99999998 478777
Q ss_pred cCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH-------HHHHhhCCCceE----EEecccee
Q 012138 315 IQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHL-------FKIQQQFPNYVK----EVRGRGLF 381 (470)
Q Consensus 315 ~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L-------~~l~~~~p~~~~----~~~~~g~~ 381 (470)
+........++.+++.++++.++++.+.. +...+++..+.+++.+.- ..+ ..+| .+. ..++.|.+
T Consensus 302 l~~~~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L-~~~p-~~~~~~~~~~g~g~~ 379 (464)
T 1ibj_A 302 VYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGL-PDHP-GHHLHFSQAKGAGSV 379 (464)
T ss_dssp HHHHHHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTS-TTST-THHHHTTTCSCCCSE
T ss_pred HHHHHHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCC-CCCc-chHHHhccCCCCceE
Confidence 75433223345678888887777653321 112222333332222110 000 0111 111 11235778
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCceeccCC---------------------------CCEEEEecCCCCCHHHHHHHH
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------~~~iR~~~~~~~t~e~i~~~~ 434 (470)
+++.+.. . .....+.+.|...||.+..+. ++++||+++. |++++++
T Consensus 380 ~~~~l~~-~--~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li 452 (464)
T 1ibj_A 380 FSFITGS-V--ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLI 452 (464)
T ss_dssp EEEECSC-H--HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHH
T ss_pred EEEEECC-H--HHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHH
Confidence 8887732 1 134568888776777765442 4689999775 8999999
Q ss_pred HHHHHHHhccc
Q 012138 435 KALHDVLELDL 445 (470)
Q Consensus 435 ~~l~~~l~~~~ 445 (470)
++|+++++ ++
T Consensus 453 ~~L~~al~-~~ 462 (464)
T 1ibj_A 453 SDLDIAFK-TF 462 (464)
T ss_dssp HHHHHHHH-SC
T ss_pred HHHHHHHh-hc
Confidence 99999998 64
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-23 Score=210.02 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=213.0
Q ss_pred CCCCCHHHHHHHHHHHHHccccCCCCC--------CCcHHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhc
Q 012138 89 QGHCHPKIMKALQEQAEKLTLSSRAFY--------NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVK 159 (470)
Q Consensus 89 lG~~~p~v~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~ 159 (470)
.+|.+|++.+++.+.. ..+ ..+. .+...++++++++++|.+.. ++++||++|+..++++++.+. ..
T Consensus 75 ~~~~~p~v~~~~~~~~---~~~-~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~-~~ 149 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLF---ADL-HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH-ED 149 (474)
T ss_dssp CCCCCCHHHHHHHHTT---SSC-CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH-HH
T ss_pred cccCCHHHHHHHHHHH---Hhc-CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHH-Hh
Confidence 3467788888887652 211 1121 13467889999999998764 577999999999888876531 11
Q ss_pred ccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|..+++..|++..+. |+....+....+.. ++.++.+ |+++|++++++ ++++|++++ .
T Consensus 150 ~Gd~~~r~~Vlv~~~~-h~~~~~~~~~~G~~------------vv~v~~~~~~~~d~~~L~~~i~~---~t~~v~~~~-p 212 (474)
T 1wyu_B 150 RGEGRTRRVVLVPDSA-HGSNPATASMAGYQ------------VREIPSGPEGEVDLEALKRELGP---HVAALMLTN-P 212 (474)
T ss_dssp TTCTTTCCEEEEETTS-CTHHHHHHHHTTCE------------EEEECBCTTSSBCHHHHHHHCST---TEEEEEECS-S
T ss_pred cCCccCCCEEEEeCCc-ChhhHHHHHHCCCE------------EEEecCCCCCCcCHHHHHHhhCC---CceEEEEEC-C
Confidence 1110123467777755 67666555444322 1223322 89999999975 789999888 4
Q ss_pred CCCccc-cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeec--ccccc-----CCCcceeEEE
Q 012138 235 GEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVIL--GKALG-----GGVIPVSAVL 306 (470)
Q Consensus 235 n~~G~~-~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~--sK~l~-----gG~~~ig~v~ 306 (470)
|++|.+ .+ +++|.++|++||+++|+||+|..+. .|.. ....++ +|++++ +|+++ ||+ ++|+++
T Consensus 213 n~~G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~-~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~-~~G~~~ 283 (474)
T 1wyu_B 213 NTLGLFERR----ILEISRLCKEAGVQLYYDGANLNAI-MGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGP-GSGPVG 283 (474)
T ss_dssp CTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGT-TTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCC-CCCCEE
T ss_pred CCCcccCCC----HHHHHHHHHHcCCEEEEeCchhhhh-ccCC-CcccCC--CcEEEEeCccccccCCCCCCC-CeEEEE
Confidence 689988 45 9999999999999999999997321 2211 112223 577755 79886 356 899999
Q ss_pred ecHHHHhhcCcC-------------------CccCCCCCCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHH
Q 012138 307 ADKEVMLCIQPG-------------------EHGSTFGGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKI 364 (470)
Q Consensus 307 ~~~~~~~~~~~~-------------------~~~~t~~~~~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l 364 (470)
+++++++.+... ....++++++++++++.+.++.+..+.+ .++..++++++.+.|+++
T Consensus 284 ~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~ 363 (474)
T 1wyu_B 284 VKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK 363 (474)
T ss_dssp ECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988877510 0112345788888888888876544434 777888888898888875
Q ss_pred HhhCCCceEEEecccee--EEEEeccCCCchhHHHHHHHHHHcCceeccC-----CCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLF--NAVEFDKTALPVSAYDICLKMKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
+.. . ..+.+.+ +++.+... .+..+++++|.++||.+... ..+++||+++..+|++++++++++|
T Consensus 364 g~~---~---~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L 434 (474)
T 1wyu_B 364 GYR---V---PYDGPSMHEFVAQPPEG---FRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAM 434 (474)
T ss_dssp TCB---C---SSCSSCCSCEEEBCSTT---CCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred CcE---e---cCCCCcceEEEEEcCCC---CCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHH
Confidence 211 1 1122222 33433212 36788999999999986311 2578999998888999999999999
Q ss_pred HHHHhcc
Q 012138 438 HDVLELD 444 (470)
Q Consensus 438 ~~~l~~~ 444 (470)
+++++ +
T Consensus 435 ~~~~~-~ 440 (474)
T 1wyu_B 435 GALLK-K 440 (474)
T ss_dssp HHHHT-S
T ss_pred HHHHH-h
Confidence 99998 6
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=207.99 Aligned_cols=282 Identities=12% Similarity=0.118 Sum_probs=191.6
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCC
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCD 189 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~ 189 (470)
.+.++...+++++++++++.+.+++++||++|++.+++.+.. +|+ .|++..+.||+..... ....+
T Consensus 55 ~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~---------~gd-~vl~~~~~y~~~~~~~~~~~~~~g- 123 (389)
T 3acz_A 55 RLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQ---------KGD-HLIAGDTLYGCTVSLFTHWLPRFG- 123 (389)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCC---------TTC-EEEEESSCCHHHHHHHHHHHHHTT-
T ss_pred CCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHHHcC-
Confidence 345667889999999999988999999999999999986633 454 7888999987643322 11111
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..++..|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|++
T Consensus 124 -----------~~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 124 -----------IEVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp -----------CEEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTC
T ss_pred -----------CEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 11356666799999998875 7899999999999999998 99999999999999999999985
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcce-eEEEecH-HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
+. .+..+ +..+|++ +++|.+++ |. |+ |++++++ ++++.+.........+.++..++++.+.++.+.
T Consensus 186 ~~-~~~~~-----~~~~di~~~S~sK~~~~~~~-~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~-- 256 (389)
T 3acz_A 186 PC-FLKPL-----ELGADIALHSVSKYINGHGD-VIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP-- 256 (389)
T ss_dssp TT-TCCGG-----GTTCSEEEEETTTTTTCSSC-CCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--
T ss_pred cc-ccCcc-----ccCCeEEEECChhhccCCCC-ceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH--
Confidence 42 12221 2345776 88999985 55 87 9999998 888877654322233467888877777775432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----hCCC-----ceE----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc
Q 012138 345 KLAERSAHLGEELRQHLFKIQQ----QFPN-----YVK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP 411 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~----~~p~-----~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~ 411 (470)
...++..++...+.+.|++... .+|. .+. ..++.|.++.+.+.. ..++.+.|.+.|+.+..
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~l~~~~i~~~~ 330 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS------FEAAKKLMEHLKVCTLA 330 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS------HHHHHHHHTTCSSSEEB
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC------HHHHHHHHHhCCCcEEC
Confidence 2334444455555555555310 0010 000 013457888887742 34455566666876543
Q ss_pred ---C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 412 ---T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 412 ---~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ .++.+|++++.. +++++++.|.++++
T Consensus 331 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 331 VSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp SCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred cCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 1 147999997654 56666666666665
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=207.19 Aligned_cols=309 Identities=15% Similarity=0.184 Sum_probs=205.1
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.+|++.+++.++++....+ +.+...++++.++++++.+++++++||++|++.+++.+..+ . .+|+ .|++
T Consensus 11 ~~~~v~~a~~~~~~~~~~~----~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~--~----~~gd-~Vl~ 79 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQLT----QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEF--S----ADRN-EIIT 79 (375)
T ss_dssp CCHHHHHHHHHHHTSSCCS----SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCC--C----TTSC-EEEE
T ss_pred CCHHHHHHHHHHHHcCccc----CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhccc--C----CCCC-EEEE
Confidence 6799999999998653322 23457889999999999889999999999999999877210 0 1454 8888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++.......... ... +.+..++. .+ |+++|++++++ ++++|++..+ +|.+.| +++|.
T Consensus 80 ~~~~~~~~~~~~~~~g~-~~~---~~~~~~~~-~~---d~~~l~~~i~~---~~~~v~~~~~---tG~~~~----l~~i~ 141 (375)
T 2fnu_A 80 TPISFVATANMLLESGY-TPV---FAGIKNDG-NI---DELALEKLINE---RTKAIVSVDY---AGKSVE----VESVQ 141 (375)
T ss_dssp CSSSCTHHHHHHHHTTC-EEE---ECCBCTTS-SB---CGGGSGGGCCT---TEEEEEEECG---GGCCCC----HHHHH
T ss_pred CCCccHhHHHHHHHCCC-EEE---EeccCCCC-CC---CHHHHHhhcCc---CceEEEEeCC---cCCccC----HHHHH
Confidence 99998776544332221 111 11111111 22 78888888865 7888765442 899987 99999
Q ss_pred HHHHhcCcEEEEeccccCCcc-cCCccccccCCCCcceeecc--ccccCCCcceeEEEe-c-HHHHhhcCcCC-------
Q 012138 252 DLCSKYNILMIADEIQSGLAR-SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-D-KEVMLCIQPGE------- 319 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~g~g~-~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~-~-~~~~~~~~~~~------- 319 (470)
++|++||++||+||+|+.+.. .+.. ...++ +.++.+|| |.+++| +|++++ + +++++.+....
T Consensus 142 ~l~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHALGSEYQNKK--VGGFA-LASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKK 215 (375)
T ss_dssp HHHHHHTCEEEEECTTCTTCEETTEE--TTSSS-SEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred HHHHHcCCEEEEECccccCCeECCee--ccccC-CeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccc
Confidence 999999999999999983211 1111 11122 23455888 998654 466665 3 66766554321
Q ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec------cceeEEE
Q 012138 320 ---------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG------RGLFNAV 384 (470)
Q Consensus 320 ---------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~------~g~~~~~ 384 (470)
.+.++..+++.++++...++.+ +.+.++.+++++++.+.|+++ | .+....+ .+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~~~~~~~~~~~~~~~ 288 (375)
T 2fnu_A 216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----P-YFTPLHPLLKDKSSNHLYPI 288 (375)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----S-SEEESGGGCSSCCCCSCEEE
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----C-CccccCCCCCCCcceEEEEE
Confidence 1222356777776665554433 346677777888888877663 1 2322222 2334455
Q ss_pred EeccCCCch-hHHHHHHHHHHcCceeccC----C---------------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 385 EFDKTALPV-SAYDICLKMKERGILAKPT----H---------------------DTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 385 ~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~----~---------------------~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
.+... +. +..++.+.|.++||.+... . .+++||+++..+|++++++++++|+
T Consensus 289 ~~~~~--~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~ 366 (375)
T 2fnu_A 289 LMHQK--FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVL 366 (375)
T ss_dssp EECGG--GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EeCcc--ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHH
Confidence 55431 12 5778999999999998721 1 1679999988899999999999999
Q ss_pred HHHhccc
Q 012138 439 DVLELDL 445 (470)
Q Consensus 439 ~~l~~~~ 445 (470)
++++ ++
T Consensus 367 ~~~~-~~ 372 (375)
T 2fnu_A 367 KTFE-SF 372 (375)
T ss_dssp HHHH-HH
T ss_pred HHHH-Hh
Confidence 9988 65
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=211.69 Aligned_cols=319 Identities=11% Similarity=0.026 Sum_probs=199.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~ 152 (470)
.++|+..+-+.. ..++++.+++. .+. .+.....++++.+++++|. +++++++||++|++.+++.+
T Consensus 29 ~v~~~~~~~~~~---~~~~~v~~a~~----~~~-----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~ 96 (374)
T 2aeu_A 29 ALYDLSGLSGGF---LIDEKDKALLN----TYI-----GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL 96 (374)
T ss_dssp GCEECSSCCCCC---CCCHHHHHHHT----STT-----HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred ceeeecccCCCC---CCCHHHHHHHH----Hhc-----CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC
Confidence 455766543222 26788888875 111 1122346777777778887 78999999999999999865
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccc--hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE-EE
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG-FL 229 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~-vi 229 (470)
. |+ .|++..++||+.... .....+. .+..+ .|+++|+++ + +++++ |+
T Consensus 97 -~----------gd-~Vl~~~~~y~~~~~~~~~~~~~g~------------~~~~v--~d~~~l~~~-~---~~~~~~v~ 146 (374)
T 2aeu_A 97 -K----------PK-KVIHYLPELPGHPSIERSCKIVNA------------KYFES--DKVGEILNK-I---DKDTLVII 146 (374)
T ss_dssp -C----------CS-EEEEECSSSSCCTHHHHHHHHTTC------------EEEEE--SCHHHHHTT-C---CTTEEEEE
T ss_pred -C----------CC-EEEEecCCCCccHHHHHHHHHcCc------------EEEEe--CCHHHHHhc-C---CCccEEEE
Confidence 2 55 788899999874321 1111111 11233 489999887 3 37889 88
Q ss_pred EccccCCCc-cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEE
Q 012138 230 FEPIQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 230 ~epi~n~~G-~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
+++++||+| ...+ +++|.++|++||++||+||+|..+. .+...........+|++ +++|.++| + ++|+++
T Consensus 147 ~~~p~nptG~~~~~----l~~i~~l~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~di~~~S~sK~l~g-~-~~G~~~ 219 (374)
T 2aeu_A 147 TGSTMDLKVIELEN----FKKVINTAKNKEAIVFVDDASGARV-RLLFNQPPALKLGADLVVTSTDKLMEG-P-RGGLLA 219 (374)
T ss_dssp ECBCTTSCBCCHHH----HHHHHHHHHHHTCCEEEECTTHHHH-HHHTTCCCHHHHTCSEEEEETTSSSSS-C-SCEEEE
T ss_pred EccCCCCCCCCccc----HHHHHHHHHHcCCEEEEECCccccc-ccccccCCccccCCcEEEecCcccccC-c-ceEEEE
Confidence 888899999 4444 9999999999999999999987432 11110000011234665 78999875 6 999999
Q ss_pred ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHhhCC--CceE-EEeccc
Q 012138 307 ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL----RQHLFKIQQQFP--NYVK-EVRGRG 379 (470)
Q Consensus 307 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l----~~~L~~l~~~~p--~~~~-~~~~~g 379 (470)
+++++++.+.........+.+++.++++.++++.+..+. .++..++...+ ++.|.+...... ..+. ...+.|
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g 298 (374)
T 2aeu_A 220 GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLER-IRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298 (374)
T ss_dssp EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHH-HHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSE
T ss_pred ECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCce
Confidence 999999887653322334578899999998888763322 23333333333 444444221110 0122 245677
Q ss_pred eeEEEEeccCCC--chhHHHHHHHH-HHcCceeccCC-----CCEEEEecCC-CCCHHHHHHHHHHHHHHHhcccC
Q 012138 380 LFNAVEFDKTAL--PVSAYDICLKM-KERGILAKPTH-----DTIVRLTPPL-SISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 380 ~~~~~~~~~~~~--~~~~~~~~~~l-~~~Gv~~~~~~-----~~~iR~~~~~-~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.++++. +.... ..+..+++..+ .++||++.|+. .+++||+++. ..++++++++++.|+++++ ++.
T Consensus 299 ~~~~~~-~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~-~~~ 372 (374)
T 2aeu_A 299 FVIKRV-YKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIK-MAF 372 (374)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHH-HHT
T ss_pred EEEEee-cccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHH-HHh
Confidence 776663 22110 00112366555 46799998752 4589999753 2233458999999999888 653
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=212.91 Aligned_cols=286 Identities=15% Similarity=0.100 Sum_probs=191.2
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDN 190 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~ 190 (470)
..+.++...+++++|+++.+.+.+++++||++|+++++.++ + +|+ .|++..+.|++........ ....
T Consensus 62 ~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~~~l~-~---------~gd-~Vi~~~~~y~~~~~~~~~~~~~~~ 130 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTVMELL-D---------AGS-HVVAMDDLYGGTFRLFERVRRRTA 130 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTS-C---------TTC-EEEEESSCCHHHHHHHHHTHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHHHHHc-C---------CCC-EEEEeCCCchHHHHHHHHhhHhhc
Confidence 34567778999999999999889999999999998854322 1 355 7888899987654332221 0000
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
...+..++.+|+++|++++++ ++++|++|+++||+|.+.| +++|.++|++||++||+||+|+..
T Consensus 131 ---------g~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~ 194 (400)
T 3nmy_A 131 ---------GLDFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASP 194 (400)
T ss_dssp ---------CCEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH
T ss_pred ---------CeEEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc
Confidence 012456777899999999975 8999999999999999997 999999999999999999999721
Q ss_pred cccCCccccccCCCCcceeeccccccCC-CcceeE--EE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSA--VL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~gG-~~~ig~--v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.......++.++.+.+++|.++|+ . ++|+ ++ .++++++.+.......+.+.+++.++++...++.+. ..
T Consensus 195 ----~~~~~~~~g~div~~S~sK~l~g~g~-~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~--~r 267 (400)
T 3nmy_A 195 ----MLQRPLSLGADLVVHSATKYLNGHSD-MVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP--LR 267 (400)
T ss_dssp ----HHCCGGGGTCSEEEEETTTTTTCSSS-CCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH--HH
T ss_pred ----ccCChhhcCCcEEEecCccccCCCCC-cceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH--HH
Confidence 111112235555566899999954 4 6655 33 477888777655555566678888888777666543 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCce
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 408 (470)
.++..+++..+.+.|++ +| .+..+ ++.|.++++++.... .....+.+.|+-.++.
T Consensus 268 ~~~~~~~a~~l~~~L~~----~p-~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~--~~~~~~~~~l~~~~~~ 340 (400)
T 3nmy_A 268 MRAHCENALALAQWLET----HP-AIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF--DAAKRFCEKTELFTLA 340 (400)
T ss_dssp HHHHHHHHHHHHHHHTT----CT-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHHc----CC-CEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH--HHHHHHHHcCCcceEe
Confidence 44455555556555544 33 44444 667899999886421 2355666666533322
Q ss_pred eccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 409 AKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 409 ~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+ .++.+|++..+.. .+++++.|+++|+
T Consensus 341 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~----~~dli~dl~~al~ 397 (400)
T 3nmy_A 341 ESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIED----LGDLRGDLERALV 397 (400)
T ss_dssp SCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHHC
T ss_pred cCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCC----HHHHHHHHHHHHh
Confidence 2211 2578999966544 4455555555553
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-24 Score=207.93 Aligned_cols=311 Identities=13% Similarity=0.060 Sum_probs=197.5
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
.+|++.+++.+.+... ..+..+...+++++++++++.+..++++||++|+..+++++.. ++++.+|+
T Consensus 27 ~~p~v~~ai~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~---------~g~~~vvi 93 (359)
T 3pj0_A 27 VLTEALQNIDDNLESD----IYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD---------RKENRRVA 93 (359)
T ss_dssp HHHHHTTTSCTTCBCC----BTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH---------HHTCCEEE
T ss_pred CCHHHHHHHHhhcccC----cccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh---------cCCCcEEE
Confidence 4677877776633211 1123456789999999999988888889999999999998876 35544455
Q ss_pred EccCccccccc--hh-cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCC-ccccCChhhH
Q 012138 172 CCGCFHGRTLA--AI-SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA-GVIIPPDGYL 247 (470)
Q Consensus 172 ~~~~yhg~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~-G~~~~~~~~l 247 (470)
..+.+|..... .. ...+..... .+. +...+ |+++|+++ . +++++|++++++||+ |.++ +.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g~~~~~---v~~--~~~~~---d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~-~~~~l 160 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLKELQQITPLL---LGT--ANQLL---TIDDIKSL-R---EPVSSVLIELPQREIGGQLP-AFEEL 160 (359)
T ss_dssp ECTTCHHHHSSTTHHHHHHCCEEEE---CSC--TTSCC---CHHHHHTC-S---SCCSEEEEESSBGGGTSBCC-CHHHH
T ss_pred EeccceeeehhcchHHHhcCceEEe---cCC--cCCCc---CHHHHHhc-c---CCceEEEEEecccCCCcccC-CHHHH
Confidence 44444433221 11 112211110 111 01112 88999887 3 378899988778886 7887 89999
Q ss_pred HHHHHHHHhcCcEEEEeccccCCc--ccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcC---Cc
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLA--RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG---EH 320 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g--~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~---~~ 320 (470)
++|.++|++||++||+||+|..+. ..+... .......|++ ++||+++++. . |++++++++++.+... ..
T Consensus 161 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~~ 236 (359)
T 3pj0_A 161 EKISEYCHEQGISLHLDGARLWEITPFYQKSA--EEICALFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRYG 236 (359)
T ss_dssp HHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH--HHHHTTCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECcchhcchhhhCCCH--HHhhccCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999999986321 112111 0011123554 8899988764 4 7888999998887532 12
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE--eccceeEEEEeccCCCchhHHHH
Q 012138 321 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDI 398 (470)
Q Consensus 321 ~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~ 398 (470)
+..+..++.+ +++.++++... +..++..++++++.+.|+++ | .+... +..+.++++.+.... ..+..++
T Consensus 237 ~~~~~~~~~~-~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 307 (359)
T 3pj0_A 237 GDLISLYPYI-LSADYYFEKRI--GKMAEYFEAAKGLAERFNSC----S-GVKTVPEVPVSNMFHVYFENSA-DEIGAIL 307 (359)
T ss_dssp CCCSCCHHHH-HHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS----T-TEEEESSSCSSSEEEEEESSCH-HHHHHHH
T ss_pred CCcchhHHHH-HHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC----C-CceeeccCCcceEEEEEecCcc-chhHHHH
Confidence 2333334443 44445555432 33445666777777777653 2 34332 345566666565321 1246788
Q ss_pred HHHHHHcCceeccCC------CCEEEEecCC---CCCHHHHHHHHHHHHHHH
Q 012138 399 CLKMKERGILAKPTH------DTIVRLTPPL---SISSNELQEGSKALHDVL 441 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~------~~~iR~~~~~---~~t~e~i~~~~~~l~~~l 441 (470)
.+.|.++||++.|+. ..++|++... ..+.+++++++++|.+++
T Consensus 308 ~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~l 359 (359)
T 3pj0_A 308 TKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL 359 (359)
T ss_dssp HHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhcC
Confidence 999999999998873 3578987542 368999999999998763
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-23 Score=202.13 Aligned_cols=304 Identities=8% Similarity=0.015 Sum_probs=201.7
Q ss_pred CCHHHHHHHHHHHHHccccCC-CC--CCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSR-AF--YNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
.+|++.+++.+.+........ .+ ..+...+++++++++++. +.+++++||++|+..+++.+.. +
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~---------~- 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE---------K- 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS---------S-
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC---------C-
Confidence 568899998888765331111 11 123456788888888864 4699999999999999987743 2
Q ss_pred CcEEEEEccCccccccc-hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCCh
Q 012138 166 EAIIVSCCGCFHGRTLA-AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~ 244 (470)
+.+++..+. ++.... .....+.... +.+... ...+ |+++|+ ++ +++++|++++++||+|.+.|
T Consensus 85 -~~i~~~~~~-~~~~~~~~~~~~g~~~~---~v~~~~-~~~~---d~~~l~--~~---~~~~~v~~~~~~nptG~~~~-- 148 (362)
T 3ffr_A 85 -KSFHCVNGS-FSKRFYEFAGELGREAY---KEEAAF-GKGF---YPADIT--VP---ADAEIICLTHNETSSGVSMP-- 148 (362)
T ss_dssp -EEEEEECSH-HHHHHHHHHHHTTCEEE---EEECCT-TCCC---CGGGCC--CC---TTCCEEEEESEETTTTEECC--
T ss_pred -cEEEEcCcH-HHHHHHHHHHHhCCCeE---EEecCC-CCCC---CHHHHh--cc---CCccEEEEEcCCCCcceeCC--
Confidence 344444444 332211 1111111110 000000 0111 778887 33 37888887777999999998
Q ss_pred hhHHHHHHHHHhc-CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCc-
Q 012138 245 GYLKAVRDLCSKY-NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH- 320 (470)
Q Consensus 245 ~~l~~l~~l~~~~-gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~- 320 (470)
+++|.++|++| |+++|+|++|+.+... .... . .|++ +++|.++++. .+|++++++++++.+.....
T Consensus 149 --l~~i~~la~~~p~~~li~D~a~~~~~~~---~~~~--~--~d~~~~s~~K~~~~~~-G~g~~~~~~~~~~~~~~~~~g 218 (362)
T 3ffr_A 149 --VEDINTFRDKNKDALIFVDAVSSLPYPK---FDWT--K--IDSVFFSVQKCFGLPA-GLGVWILNDRVIEKSKALLAK 218 (362)
T ss_dssp --HHHHTTSGGGSTTSEEEEECTTTTTSSC---CCTT--S--CSEEEEETTSTTCCCS-CCEEEEEEHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHhCCCCEEEEecccccCCcc---cChh--H--CcEEEEecccccCCCC-ceEEEEECHHHHHHhhhcccc
Confidence 99999999999 9999999999732111 1111 1 4665 6679998554 67888899988776653221
Q ss_pred -------------------cC-CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-
Q 012138 321 -------------------GS-TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR- 376 (470)
Q Consensus 321 -------------------~~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~- 376 (470)
+. .++.+..+++++.++++.+.+ +.+.++.+++++++.+.|+++ | .+....
T Consensus 219 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~ 293 (362)
T 3ffr_A 219 RKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----K-VFSFGVE 293 (362)
T ss_dssp TCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----S-SEEESSS
T ss_pred CCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----c-CceeccC
Confidence 11 345677788888888887654 456677777778888777664 2 233222
Q ss_pred ----ccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 377 ----GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 377 ----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+.++++.+.. +..++.+.|.++||.+.++ .++++|+++...++++++++++++|++++
T Consensus 294 ~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 294 DAKLRSMTTIVANTTM-----LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp CGGGBCSSEEEEEESS-----CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ChhhcCCceEEEecCC-----CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 124455554443 4778999999999999865 46899999988899999999999998875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=205.03 Aligned_cols=312 Identities=16% Similarity=0.165 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHH-ccccCC--CCC--CCcHH----HHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEK-LTLSSR--AFY--NDKFP----VFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~~~--~~~--~~~~~----~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
.+|++.+++.+++.. +...+. .++ ..... .+.++++++++.+.. +++++|++|++.+++.+..
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~------- 109 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALIN------- 109 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSC-------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcC-------
Confidence 489999999988843 211111 111 12223 344578888887654 6667789999999998754
Q ss_pred CCCCCcEEEEEccCccccccch--hcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQ 234 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~epi~ 234 (470)
+|+ .|++..++|++..... ....+.. .. ...++. .|+++|++++++. ++++|++.+.+
T Consensus 110 --~gd-~vl~~~~~~~~~~~~~~~~~~~g~~-~~---------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~ 174 (417)
T 3n0l_A 110 --PGD-KILGMDLSHGGHLTHGAKVSSSGKM-YE---------SCFYGVELDGRIDYEKVREIAKKE--KPKLIVCGASA 174 (417)
T ss_dssp --TTC-EEEEECC----------------CC-SE---------EEEECCCTTSSCCHHHHHHHHHHH--CCSEEEECCSS
T ss_pred --CCC-EEEecccccccccchhhhhhhhcce-ee---------eEeccCCCCCCcCHHHHHHHHHhc--CCeEEEECCcc
Confidence 455 7888888886643211 1111110 00 111111 2899999999843 67888876634
Q ss_pred CCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcceeEEEec-HH
Q 012138 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KE 310 (470)
Q Consensus 235 n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~-~~ 310 (470)
+|.+.+ +++|.++|++||++||+||+|. |+...|.... . .. ..|++ +++|++ +|. ++|+++++ ++
T Consensus 175 --~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~di~~~s~sK~l-~g~-~~G~~~~~~~~ 243 (417)
T 3n0l_A 175 --YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-P-FP-YAHVVSSTTHKTL-RGP-RGGIIMTNDEE 243 (417)
T ss_dssp --CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-C-TT-TCSEEEEESSTTT-CSC-SCEEEEESCHH
T ss_pred --cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC-c-cc-cceEEEeeCcccc-CCC-CeeEEEECCHH
Confidence 388887 9999999999999999999985 4333332211 0 11 23666 555999 455 78999998 78
Q ss_pred HHhhcCcCCc-cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEE
Q 012138 311 VMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAV 384 (470)
Q Consensus 311 ~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~ 384 (470)
+++.+..... +.+.+.++..++++.+++....+ +.+.++.+++++++.+.|.+.+ +.... ..+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g------~~~~~~~~~~~~~~~ 317 (417)
T 3n0l_A 244 LAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRK------FKLVSDGTDNHLVLM 317 (417)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEE
T ss_pred HHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC------ceeccCCCCceEEEE
Confidence 8887754432 22334566677776666665332 4566777777788888887631 22222 23446666
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccC----------CCCEEEEecCCC----CCHHHHHHHHHHHHHHHhccc
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTPPLS----ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------~~~~iR~~~~~~----~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.... .+...+.+.|.++||.+.+. ..+.+|++++.. ++++++++++++|.++++ +.
T Consensus 318 ~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~ 389 (417)
T 3n0l_A 318 SFLDRE--FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILD-DV 389 (417)
T ss_dssp ECTTSS--SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred EcccCC--CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh-cc
Confidence 554322 35778888999999998732 236799986533 679999999999999998 64
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=213.52 Aligned_cols=341 Identities=12% Similarity=0.105 Sum_probs=201.1
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHH-hhhh-------CCCeEEecCChhHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERL-TSMF-------GYDMVLPMNTGAEGVETA 148 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~-------~~~~v~~~~sGteA~~~a 148 (470)
++||..+. .++.+|.+.+++.+.+....+.......++++++++.+ .+.. ..++|++|+|+++|+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 45665553 24567888888888775333222223344566665544 3332 136899999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhccc-CCcccccCCCCCCCC-eeeecCCCHHHHHHHHHhcCCCeE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++++....... +|+ .|++.+|+|++....+.... +..... .+..++ .+.+ |+++|+++++. +++
T Consensus 182 ~~~l~~~~l~~----~Gd-~Vlv~~P~y~~~~~~~~~~~~g~~~~~---v~~~~~~~~~~---d~~~l~~~~~~---~~k 247 (546)
T 2zy4_A 182 FESLKLNGLLK----AGD-KVAIGMPVFTPYIEIPELAQYALEEVA---INADPSLNWQY---PDSELDKLKDP---AIK 247 (546)
T ss_dssp HHHHHHTTSSC----TTC-EEEEEESCCHHHHHHHHSTTSCCEEEE---EECBGGGTTBC---CHHHHGGGGST---TEE
T ss_pred HHHhhhhhcCC----CCC-EEEEeCCCCccHHHHHHHcCCCcEEEE---EecCcccCCCC---CHHHHHHhhCC---CCe
Confidence 98742101111 454 78889999987765432211 110000 000000 0112 78888877643 788
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHH--HhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCccee
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLC--SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~--~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig 303 (470)
+|++..++||||.++ +.+.+++|.++| ++||++||+||+|++|......+.....+....+.||||.++ +|+ |+|
T Consensus 248 ~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl-RiG 325 (546)
T 2zy4_A 248 IFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW-RLG 325 (546)
T ss_dssp EEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG-CEE
T ss_pred EEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc-ceE
Confidence 887555599999999 899999999999 889999999999998764322111111112223559999997 898 999
Q ss_pred EEEecHH-HHhhcCcC------------------------------------CccCCCCCCHHHHHHH-HHH-HHHHhh-
Q 012138 304 AVLADKE-VMLCIQPG------------------------------------EHGSTFGGNPLASAVA-IAS-LDVIRD- 343 (470)
Q Consensus 304 ~v~~~~~-~~~~~~~~------------------------------------~~~~t~~~~~~~~aaa-~a~-l~~~~~- 343 (470)
+++++++ +++.+... ....+.+.+.+.+.++ ..+ ...+.+
T Consensus 326 ~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~ 405 (546)
T 2zy4_A 326 VVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEA 405 (546)
T ss_dssp EEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhcc
Confidence 9998875 66554210 0012234455555442 211 122322
Q ss_pred h----hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE-EEEeccC-----CC--------c-hhHHHHHHHHHH
Q 012138 344 E----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKT-----AL--------P-VSAYDICLKMKE 404 (470)
Q Consensus 344 ~----~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~-~~~~~~~-----~~--------~-~~~~~~~~~l~~ 404 (470)
+ .+++.++++.+.+.+.|. .+ +....+.+.|+ ++.+... .. + .+...+.+.|.+
T Consensus 406 ~~~~~~~r~~~~~r~~~l~~~L~-----~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~ 478 (546)
T 2zy4_A 406 DEYKHTLKQLIRRRETTLYRELG-----MP--PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADE 478 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGT-----SS--CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CC--cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHH
Confidence 2 233333333333333331 11 22223455555 5544210 00 0 023346667778
Q ss_pred cCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 405 RGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 405 ~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+||.+.|+. .+++||++. ..+++++++++++|+++++ ++.
T Consensus 479 ~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~-~~~ 523 (546)
T 2zy4_A 479 TGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMAD-ELY 523 (546)
T ss_dssp HSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHH-HHH
T ss_pred CCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHH-HHH
Confidence 899999863 578999965 3589999999999999998 665
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=203.70 Aligned_cols=315 Identities=13% Similarity=0.114 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHHcccc-C--CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCc
Q 012138 92 CHPKIMKALQEQAEKLTLS-S--RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEA 167 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~ 167 (470)
-+|++.+++.++++..... + .....++..++++++++++|.+.+++++||++|++.+++.+ .. +|+
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~---------~gd- 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIG---------EGD- 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCC---------TTC-
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CcC-
Confidence 4689999999999875332 1 11234558999999999999888999999999999999876 32 454
Q ss_pred EEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 168 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 168 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
.|++..++|++........+..... .+..++...+ |+++|++++++ ++++|++ .||+|.+.+ +
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~---~~~~G~~~~----~ 146 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVF----VDVEADTYCI---DPQLIKSAITD---KTKAIIP---VHLFGSMAN----M 146 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEE----ECBCTTTCSB---CHHHHGGGCCT---TEEEECC---BCCTTCCCC----H
T ss_pred EEEECCCccHhHHHHHHHcCCEEEE----EecCCCCCCc---CHHHHHHhhCC---CCeEEEE---eCCcCCccc----H
Confidence 7888999987765443322221111 1111111122 89999988865 7888885 458998877 9
Q ss_pred HHHHHHHHhcCcEEEEeccccCCc-ccCCccccccCCCCcceeec--cccccCCCcceeEEEe-cHHHHhhcCcCCcc--
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLA-DKEVMLCIQPGEHG-- 321 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g-~~G~~~~~~~~~~~pdi~s~--sK~l~gG~~~ig~v~~-~~~~~~~~~~~~~~-- 321 (470)
++|.++|++||++||+||+|+.+. ..+..+ ..++ ..++.+| +|.+++| ++|++++ ++++++.+......
T Consensus 147 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~ 221 (418)
T 2c81_A 147 DEINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSR 221 (418)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTE
T ss_pred HHHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCc
Confidence 999999999999999999999654 333221 1111 2345577 8999885 8899998 47776655321100
Q ss_pred --------------------CCC----CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-e
Q 012138 322 --------------------STF----GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-R 376 (470)
Q Consensus 322 --------------------~t~----~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~ 376 (470)
... ..+++.++.+...++.+ +.+.++.+++.+++.+.|.++ | .+... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~ 294 (418)
T 2c81_A 222 VYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----D-GIKVMKR 294 (418)
T ss_dssp EECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----T-TEEECCC
T ss_pred cccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----C-CcccCCC
Confidence 001 13444444443333333 345566666677777766543 2 23322 2
Q ss_pred ccc----e--eEEEEeccC-CCchhHHHHHHHHHHc-Cce---eccCC--------------------------------
Q 012138 377 GRG----L--FNAVEFDKT-ALPVSAYDICLKMKER-GIL---AKPTH-------------------------------- 413 (470)
Q Consensus 377 ~~g----~--~~~~~~~~~-~~~~~~~~~~~~l~~~-Gv~---~~~~~-------------------------------- 413 (470)
+.+ . ++.+.+... ..+.+..++.+.|.++ ||. +.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (418)
T 2c81_A 295 PPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLH 374 (418)
T ss_dssp CTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCC
T ss_pred CCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCC
Confidence 233 2 233545420 0012678899999999 999 76431
Q ss_pred --------CCEEEEecCCCC-CHHHHHHHHHHHHHHHhcccC
Q 012138 414 --------DTIVRLTPPLSI-SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 414 --------~~~iR~~~~~~~-t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.+.+||+++..+ |+||+++++++|+++++ ++.
T Consensus 375 ~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~-~~~ 415 (418)
T 2c81_A 375 YPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR-KFC 415 (418)
T ss_dssp CHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH-TTC
T ss_pred ChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH-hhc
Confidence 148999999999 99999999999999998 754
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=205.59 Aligned_cols=284 Identities=15% Similarity=0.106 Sum_probs=189.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+..+...++++.++++++.+.+++++||++|++.+++ +.+ +|+ .|++..+.||+..........
T Consensus 52 ~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~---------~gd-~Vi~~~~~y~~~~~~~~~~~~----- 115 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLP---------QGS-HAVSIGDVYGGTHRYFTKVAN----- 115 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSC---------SSC-EEEEESSCCHHHHHHHHHTST-----
T ss_pred CCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcC---------CCC-EEEEeCCCchHHHHHHHHHHH-----
Confidence 3455678899999999988888888899999999998 533 455 788888888764321100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc----CcEEEEeccccC
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY----NILMIADEIQSG 269 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~----gillI~Dev~~g 269 (470)
.....+..++.+| ++|++++++ ++++|++++++||+|.++| +++|.++|++| |+++|+||+|+.
T Consensus 116 ----~~G~~v~~v~~~d-~~l~~~i~~---~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 116 ----AHGVETSFTNDLL-NDLPQLIKE---NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ----TTCSCCEEESSHH-HHHHHHSCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ----HcCcEEEEeCCCh-HHHHHhccc---CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 0012245666667 889888865 7999999999999999998 99999999999 999999999995
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcce-eEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 344 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~i-g~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~ 344 (470)
+.+. ..+ .++ .|++ +++|.+++ |+ |+ |+++++ +++++.+.........+.++..++++..+++.+.
T Consensus 184 ~~~~-~~~---~~~--~di~~~S~sK~~g~~G~-rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~-- 254 (393)
T 1n8p_A 184 PYIS-NPL---NFG--ADIVVHSATKYINGHSD-VVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLH-- 254 (393)
T ss_dssp HHHC-CGG---GGT--CSEEEEETTTTTTCSSC-CCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--
T ss_pred cccC-CHH---HcC--CeEEEEECcccccCCCC-ceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHH--
Confidence 5332 222 123 4655 88999994 76 88 888884 7888877643222223446777776666665432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEE------------------ec-c-ceeEEEEeccCCCchhHHHHHHHHH
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNY-VKEV------------------RG-R-GLFNAVEFDKTALPVSAYDICLKMK 403 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~------------------~~-~-g~~~~~~~~~~~~~~~~~~~~~~l~ 403 (470)
...++..++...+.+.|++. | . +..+ ++ . |.++.+.+.... .+...+.+.|.
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~----~-~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~--~~~~~~l~~l~ 327 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAAD----K-ENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA--EAASKFASSTR 327 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSC----T-TTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH--HHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhC----C-CCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH--HHHHHHHhhCC
Confidence 22333444445555554432 1 1 2211 12 4 778888885421 25566666665
Q ss_pred HcCceec----------c---C--------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 404 ERGILAK----------P---T--------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 404 ~~Gv~~~----------~---~--------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..++.++ | . ..+.+||++....++++|+.+.++|+++.
T Consensus 328 ~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 328 LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 4343321 1 1 14789999999999999999999988753
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=204.93 Aligned_cols=281 Identities=17% Similarity=0.171 Sum_probs=191.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc---hhcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA---AISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~---~~~~~~~~ 190 (470)
+.++...++++++++++|.+..++++||++|+..+++.+.+ +|+ .||+..+.|++.... .....+
T Consensus 111 ~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~---------~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G-- 178 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP---------AGG-HIVTTTDCYRKTRIFIETILPKMG-- 178 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC---------SSC-EEEEETTSCHHHHHHHHHTGGGGT--
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEcCCCchhHHHHHHHHHHHcC--
Confidence 45667889999999999888888889999999999986643 455 788888887653221 111111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe-EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI-AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~-~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..++.+|+++|++++++ ++ ++|++++++||+|.+.| +++|.++|++||+++|+||+|+.
T Consensus 179 ----------~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~ 241 (445)
T 1qgn_A 179 ----------ITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp ----------CEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred ----------CEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 12456677799999999987 67 99999999999999998 99999999999999999999973
Q ss_pred CcccCCccccccCCCCccee--eccccccCC-CcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG-~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.. . .......+|++ +++|.++|+ ..++|++++++++++.+...........+++.++++...++.+.. .
T Consensus 242 ~~-~-----~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r 313 (445)
T 1qgn_A 242 PL-N-----QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHL--R 313 (445)
T ss_dssp TT-T-----CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHH--H
T ss_pred cc-c-----CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHH--H
Confidence 21 1 11223446776 588999853 226999999999888775432222223567776666555554422 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHHHcCce
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 408 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 408 (470)
.++..++..++.+.|++. | .+..+ ++.|.++.+.+.... .....+.+.|...++.
T Consensus 314 ~~~~~~~a~~l~~~L~~~----p-~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~--~~~~~~l~~l~~~~i~ 386 (445)
T 1qgn_A 314 VQQQNSTALRMAEILEAH----P-KVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL--LTTAKFVDALKIPYIA 386 (445)
T ss_dssp HHHHHHHHHHHHHHHHTC----T-TEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH--HHHHHHHHHCSSSEEC
T ss_pred HHHHHHHHHHHHHHHhcC----C-CceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH--HHHHHHHHhCCCceEe
Confidence 333444456666666553 2 22111 246888888886421 2356677666533333
Q ss_pred eccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 409 AKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 409 ~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
++.+ .++.|||++. .||++++++.|+++++
T Consensus 387 ~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 387 PSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp SCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred ccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 2211 1479999954 4689999999999887
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=198.08 Aligned_cols=311 Identities=14% Similarity=0.184 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcEEEE
Q 012138 93 HPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ii~ 171 (470)
+|++.+++.+.++.. +.+. ..+...++++.++++++.+++++++||++|++.+++.+ .. +|+ .|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~~~--~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~---------~gd-~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIAP--LGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVK---------QDD-IVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTSC--TTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCC---------TTC-EEEE
T ss_pred CHHHHHHHHHHHHcC-CccC--CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCC---------CCC-EEEE
Confidence 467888888888652 2111 12347889999999999999999999999999999876 32 454 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++|++........+..... .+.. +...+ |+++|++++++.++++++|++++ |+|...+ +++|.
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~----v~~~-~~~~~---d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~ 142 (394)
T 1o69_A 78 SSFTFIASVAPICYLKAKPVF----IDCD-ETYNI---DVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIV 142 (394)
T ss_dssp ESSSCGGGTHHHHHTTCEEEE----ECBC-TTSSB---CHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEE----EEeC-CCCCc---CHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHH
Confidence 999988765544332221111 1110 00112 89999999986433578888765 6887776 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEec-HHHHhhcCcCCc-------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH------- 320 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~-~~~~~~~~~~~~------- 320 (470)
++|++||++||+||+|+ |+.+.|.... . ++ ..|+.+|| |.++| . ++|+++++ +++++.+.....
T Consensus 143 ~l~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~~-~-~~G~~~~~~~~l~~~l~~~~~~~~~~~~ 217 (394)
T 1o69_A 143 EICKENDIVLIEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIITT-S-GGGMLIGKNKEKIEKARFYSTQARENCL 217 (394)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHTBTCCCSSS
T ss_pred HHHHHcCCEEEEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCCC-C-CceEEEECCHHHHHHHHHHHHhccccCc
Confidence 99999999999999999 7655543211 1 11 35788885 66664 4 89999995 787776643211
Q ss_pred -------cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-cce--eEEEEeccCC
Q 012138 321 -------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGL--FNAVEFDKTA 390 (470)
Q Consensus 321 -------~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g~--~~~~~~~~~~ 390 (470)
+..+..+++.++++...++.++ +..++.+++.+++.+.|.++ ..+ ...... .+. ++.+.++...
T Consensus 218 ~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-~~~---~~~~~~~~~~~~~~~i~~~~~~ 291 (394)
T 1o69_A 218 HYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY-FSF---LDELENSRSNRWLSTALINFDK 291 (394)
T ss_dssp SCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT-EEC---CCCCTTEECCCSSEEEEESCCG
T ss_pred cccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-ccc---cCCCCCCcceeEEEEEEecchh
Confidence 1112246677777665555443 36677888888888888765 222 111000 122 3555554210
Q ss_pred ------------------CchhHHHHHHHHHHcCceeccCCC------------------------CEEEEecCCCCCHH
Q 012138 391 ------------------LPVSAYDICLKMKERGILAKPTHD------------------------TIVRLTPPLSISSN 428 (470)
Q Consensus 391 ------------------~~~~~~~~~~~l~~~Gv~~~~~~~------------------------~~iR~~~~~~~t~e 428 (470)
.+.+..++.+.|.++||.+.++.. ..+|+.....+|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~e 371 (394)
T 1o69_A 292 NELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKD 371 (394)
T ss_dssp GGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHH
T ss_pred hccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHH
Confidence 013677899999999999876521 34555556779999
Q ss_pred HHHHHHHHHHHHHh
Q 012138 429 ELQEGSKALHDVLE 442 (470)
Q Consensus 429 ~i~~~~~~l~~~l~ 442 (470)
|+++++++|++++.
T Consensus 372 di~~~~~~l~~~~~ 385 (394)
T 1o69_A 372 DVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999887
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=204.69 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=211.4
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-----CCcHHHHHHHHhhhhCC---CeEEecCChhH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-----NDKFPVFAERLTSMFGY---DMVLPMNTGAE 143 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~---~~v~~~~sGte 143 (470)
..+..|+|+..+ ++.+|.+.+++...+.+.. ...+. ..+..++.+++++++|. +.++||+||++
T Consensus 98 ~~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~ 169 (497)
T 2qma_A 98 TQHPDCIAHLHT------PPLMPAVAAEAMIAALNQS--MDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQ 169 (497)
T ss_dssp TTSTTBCSSSCC------CCBHHHHHHHHHHHHHCCC--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHH
T ss_pred CCCCCeeEeCCC------CCcHHHHHHHHHHHhhccc--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchH
Confidence 345667776554 2356788887765543221 11111 12234456678888876 67999999999
Q ss_pred HHHHHHHHHHHhchh--------cccCCC--CCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----
Q 012138 144 GVETALKLARKWGYV--------KKKFSI--DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---- 209 (470)
Q Consensus 144 A~~~al~~~~~~~~~--------~~~~~~--g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 209 (470)
|+..++++++.+... .+|.++ ++..|++.... |.+...+....+.. . ..+..+|.+
T Consensus 170 a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~-h~s~~~~~~~~g~g-~--------~~v~~v~~~~~~~ 239 (497)
T 2qma_A 170 SNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKS-HFTVQKSASWMGLG-E--------KAVMTVDANADGT 239 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTS-CTHHHHHHHHTTSC-G--------GGEEEECBCTTSS
T ss_pred HHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCc-hHHHHHHHHHcCCC-c--------ccEEEEecCCCCc
Confidence 999999987643211 122221 23256555545 55544443333211 0 012333333
Q ss_pred -CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-
Q 012138 210 -DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV- 284 (470)
Q Consensus 210 -d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~- 284 (470)
|+++|++++++. +.++.+|+++..+|++|.+.| +++|.++|++||++|++|++|+++..... +.....++
T Consensus 240 ~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~ 314 (497)
T 2qma_A 240 MDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVE 314 (497)
T ss_dssp BCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGG
T ss_pred CCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcc
Confidence 899999999763 112447777666999999988 99999999999999999999997655444 32223455
Q ss_pred Ccceeec--cccccCCCcceeEEEecHH-HHhhcCcCC----ccCCCCCCHHH----------HHHHHHHHHHHhh---h
Q 012138 285 RPDMVIL--GKALGGGVIPVSAVLADKE-VMLCIQPGE----HGSTFGGNPLA----------SAVAIASLDVIRD---E 344 (470)
Q Consensus 285 ~pdi~s~--sK~l~gG~~~ig~v~~~~~-~~~~~~~~~----~~~t~~~~~~~----------~aaa~a~l~~~~~---~ 344 (470)
.+|++++ +|++++++ ++|+++++++ .++.+.... ...+...++.. .....++++.+.. +
T Consensus 315 ~~D~i~~s~hK~l~~p~-~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~ 393 (497)
T 2qma_A 315 RAHSISVDFHKLFYQTI-SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALG 393 (497)
T ss_dssp GCSEEEEETTTTTCCCS-SCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHH
T ss_pred cCCEEEEcchhccCCCc-ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 5687755 89998887 9999997644 344443210 00000112221 1123344555443 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCc--hhHHHHHHHHHHcCceeccC----CCCEE
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALP--VSAYDICLKMKERGILAKPT----HDTIV 417 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~----~~~~i 417 (470)
++.++..++++++.+.|+++ | .+..+ .+.+.++.+.+...... ....++.+.|.++|+++.+. +.+++
T Consensus 394 ~~~~~~~~~a~~l~~~L~~~----~-~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~l 468 (497)
T 2qma_A 394 DMYDHLLAQTLEVADMIRTN----D-QFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTAL 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTC----T-TEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhC----C-CeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEE
Confidence 46667777788887777653 2 23321 34566777766532100 11346778889999988642 34689
Q ss_pred EEec-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 418 RLTP-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 418 R~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
|+++ +..+|++++++++++|+++++ ++
T Consensus 469 Ris~~~~~~t~edi~~~~~~l~~~~~-~~ 496 (497)
T 2qma_A 469 KFTILNPCLTTSDFESLLSKINMLAV-EL 496 (497)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 9997 788999999999999999987 64
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-23 Score=205.61 Aligned_cols=281 Identities=20% Similarity=0.163 Sum_probs=189.8
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh---cccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI---SMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~---~~~~~~ 190 (470)
+.++...+++++++++++.+..++++||++|++.+++.+.. +|+ .|++..++||+...... ...+
T Consensus 55 ~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~---------~gd-~vi~~~~~~~~~~~~~~~~~~~~g-- 122 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ---------AGD-NIVSTPNLYGGTFNQFKVTLKRLG-- 122 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEECSCCCHHHHHHHHTHHHHTT--
T ss_pred CCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHHHcC--
Confidence 34566789999999999988888888999999999987643 344 88889999887654431 1111
Q ss_pred ccccCCCCCCCCeeee-cCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 191 EAIRGFGPLLPGHLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~-~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
..+..+ +.+|+++|++++++ ++++|++++++||+|.+.| +++|.++|++||+++|+||+|++
T Consensus 123 ----------~~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 123 ----------IEVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp ----------CEEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG
T ss_pred ----------CEEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc
Confidence 113456 66699999999976 8999999999999999997 99999999999999999999954
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcceeEEEec---HHH----HhhcCc---CCcc---------------
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD---KEV----MLCIQP---GEHG--------------- 321 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~---~~~----~~~~~~---~~~~--------------- 321 (470)
++..+..+ +..+|++ +++|.+++ |. ++|++++. +++ .+.+.+ +.++
T Consensus 186 ~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~-~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~ 259 (421)
T 2ctz_A 186 GGYLLRPL-----AWGAALVTHSLTKWVGGHGA-VIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVK 259 (421)
T ss_dssp GGTSCCGG-----GGTCSEEEEETTTTTTCSSC-CCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHH
T ss_pred ccccCCcc-----ccCCeEEEECCcccccCCCC-cEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHH
Confidence 55444333 2346877 88999995 65 88887764 111 111211 0111
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE------------------
Q 012138 322 --------STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------ 375 (470)
Q Consensus 322 --------~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------ 375 (470)
.....+++.++++...++.+.. ..++..++..++.+.|.+. | .+..+
T Consensus 260 ~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~~~~~~a~~l~~~L~~~----p-~v~~v~~p~~~~~~~~~~~~~~~ 332 (421)
T 2ctz_A 260 ARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAERHVENTLHLAHWLLEQ----P-QVAWVNYPGLPHHPHHDRAQKYF 332 (421)
T ss_dssp HHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHHTC----T-TEEEEECTTSTTCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHhHHHHHHHHHhC----C-CeeEEECCCCCCCCCHHHHHHhc
Confidence 1225678887777776665432 3344445666666666553 2 34333
Q ss_pred -eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC---------------------------CCCEEEEecCCCCCH
Q 012138 376 -RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSISS 427 (470)
Q Consensus 376 -~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------------------------~~~~iR~~~~~~~t~ 427 (470)
++.|.++.+++.... .....+.+.|...++.+..+ .++.||+++.+
T Consensus 333 ~~~~g~ivsf~l~~~~--~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~---- 406 (421)
T 2ctz_A 333 KGKPGAVLTFGLKGGY--EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL---- 406 (421)
T ss_dssp TTCCCSEEEEEETTHH--HHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----
T ss_pred cCCCceEEEEEeCCCH--HHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----
Confidence 367889999886421 23455555554434333211 14799999544
Q ss_pred HHHHHHHHHHHHHHh
Q 012138 428 NELQEGSKALHDVLE 442 (470)
Q Consensus 428 e~i~~~~~~l~~~l~ 442 (470)
|+++++++.|+++++
T Consensus 407 e~~~~li~~l~~al~ 421 (421)
T 2ctz_A 407 EHVEDLKAELKEALA 421 (421)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhC
Confidence 688888888887763
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=202.18 Aligned_cols=287 Identities=15% Similarity=0.121 Sum_probs=190.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
+.++...++++.++++++.+..+++++|++|+..+++ +.+ +|+ .|++..+.|++............+
T Consensus 64 ~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~---------~gd-~Vl~~~~~y~~~~~~~~~~~~~~G-- 130 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLK---------AGD-QIICMDDVYGGTNRYFRQVASEFG-- 130 (403)
T ss_dssp --CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSC---------TTC-EEEEESSCCHHHHHHHHHTGGGGT--
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhC---------CCC-EEEEeCCCcchHHHHHHHHHHHcC--
Confidence 4456678999999999988777778888999999988 532 454 788899998764321110100000
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC-cEEEEeccccCCcc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-ILMIADEIQSGLAR 272 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g-illI~Dev~~g~g~ 272 (470)
..+..++.+|+++|++++++ ++++|++++++||+|.+.+ +++|.++|++|| +++|+||+|+++..
T Consensus 131 -------~~v~~v~~~d~~~l~~~i~~---~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 131 -------LKISFVDCSKIKLLEAAITP---ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp -------CEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred -------CEEEEECCCCHHHHHHhcCc---CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 12456677799999998875 7999999988999999997 999999999999 99999999985432
Q ss_pred cCCccccccCCCCccee--eccccccC--CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g--G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
...+ +..+|++ +++|.++| |. ++|++++ ++++++.+.......+.+.+++.++++...++.+.. ..
T Consensus 197 -~~~~-----~~~~div~~S~sK~~~g~~~~-~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~--r~ 267 (403)
T 3cog_A 197 -QRPL-----ALGADISMYSATKYMNGHSDV-VMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHV--RM 267 (403)
T ss_dssp -CCTT-----TTTCSEEEEETTTTTTCSSCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--HH
T ss_pred -CCcc-----ccCCeEEEEcChhhccCCCCC-eEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH--HH
Confidence 1111 2345666 88999984 44 7899998 478887776544444556788888887777764422 23
Q ss_pred HHHHHHHHHHHHHHHHHH----------hhCCCceE----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc--
Q 012138 348 ERSAHLGEELRQHLFKIQ----------QQFPNYVK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-- 411 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~----------~~~p~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-- 411 (470)
++..++...+.+.|++.. ..+| .+. ..++.|.++.|.+... ...+.+.|.+.|+.+..
T Consensus 268 ~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p-~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~l~~~~i~~~~~s 341 (403)
T 3cog_A 268 EKHFKNGMAVAQFLESNPWVEKVIYPGLPSHP-QHELVKRQCTGCTGMVTFYIKGT-----LQHAEIFLKNLKLFTLAES 341 (403)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTST-THHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-cHHHHHhcCCCCceEEEEEecCC-----HHHHHHHHHhCCcceEccC
Confidence 333334444444443320 0111 111 1124588888877532 24455666666874321
Q ss_pred -C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 412 -T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 412 -~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+ .++.+||++....++++|+.+.++|+++++
T Consensus 342 ~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 342 LGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp CSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 1 157999999887777777777777766554
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=198.07 Aligned_cols=324 Identities=11% Similarity=0.053 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHHcc-ccCCCCCCCcHHHHHHHHhhhh-C----CC--eEEecCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 94 PKIMKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF-G----YD--MVLPMNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 94 p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~----~~--~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
|.|.+|..+.++... +.+. +..-..+|.+.+++++ + .+ ..+-|.+||.|+..++..+.+. +. .+|
T Consensus 65 ~~Vk~A~~~~~~~~~~~~Y~--p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~-~~----~pg 137 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYEYL--PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRV-FD----AET 137 (420)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTT-SC----TTT
T ss_pred HHHHHHHHHHhcCCCCCCCC--CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHh-cC----CCC
Confidence 678887766665422 1111 1122344444444432 2 12 2455889999999888876542 11 145
Q ss_pred CcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChh
Q 012138 166 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
+ .|++.+|+|..+.......++....... .+.++...+ |.+.+.+.++...+++++++.++.+||||.++ +.+
T Consensus 138 d-~V~ip~P~w~~y~~i~~~aG~~~V~~~~--~~~~~~~~~---d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~-~~~ 210 (420)
T 4h51_A 138 T-PIYLSDPTWPNHYGVVKAAGWKNICTYA--YYDPKTVSL---NFEGMKKDILAAPDGSVFILHQCAHNPTGVDP-SQE 210 (420)
T ss_dssp S-CEEEEESCCTHHHHHHHHTTCCCEEEEE--CEEGGGTEE---CHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC-CHH
T ss_pred C-EEEEecCCchhHHHHHHHcCCeEEEeec--cccccccCC---CHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC-CHH
Confidence 5 7788899985443333333322111000 000111122 77888888876666778888888899999999 999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCc---ccc---ccCCC-Ccceeecccccc-CCCcceeEEEecHHHHhh---
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRM---LAS---DWEEV-RPDMVILGKALG-GGVIPVSAVLADKEVMLC--- 314 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~---~~~---~~~~~-~pdi~s~sK~l~-gG~~~ig~v~~~~~~~~~--- 314 (470)
.+++|.++|+++++++|+||+|.+|.+.+.. +.. ...+. ..-+-+|||.++ .|+ |+|++++..+..+.
T Consensus 211 ~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 211 QWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSE-RAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccC-ceEEEEecccCHHHHHH
Confidence 9999999999999999999999998654321 111 11111 112349999998 798 99999875432222
Q ss_pred ----cCcCCccCCCCCCHHHHHHHHHHHHH------Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 315 ----IQPGEHGSTFGGNPLASAVAIASLDV------IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 315 ----~~~~~~~~t~~~~~~~~aaa~a~l~~------~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
+.........+.+..++.++...+.. +++ +.++++++++++.+.+.|++++... .+..+..++.|+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~--~~~~i~~q~GmF 367 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPG--SWEHVINQIGMF 367 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS--CCTHHHHCCSSE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCeecCCCceE
Confidence 11111222333555566655555532 111 3456667777777777777654221 122223333444
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.+ +.. +. +.++.|+++||++.+++ ||++. ..++++|++++++|.++++ ++.+
T Consensus 368 ~~-~gl-----s~-e~v~~L~e~~Vy~~~~g----Ris~A-gl~~~ni~~~a~aI~~vvr-~i~r 419 (420)
T 4h51_A 368 SF-LGL-----SK-AQCEYCQNHNIFITVSG----RANMA-GLTHETALMLAQTINDAVR-NVNR 419 (420)
T ss_dssp EE-CCC-----CH-HHHHHHHHTTEECCTTC----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred Ee-cCc-----CH-HHHHHHHhCCEEEcCCC----EEEec-cCCHHHHHHHHHHHHHHHH-Hhhc
Confidence 44 222 22 34678889999988764 89854 4689999999999999999 7654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=192.29 Aligned_cols=307 Identities=12% Similarity=0.127 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
-+|++.+++.++++...+ +..+...++++.++++++.+.+++++||++|++.+++.++.+ ..++..+|+ .|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~--~~~~~~~g~-~Vi~ 85 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKMF----TMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFT--KKPRLKKGD-EIIV 85 (390)
T ss_dssp CCHHHHHHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSS--SSCSCCTTC-EEEE
T ss_pred CCHHHHHHHHHHHHcCCC----CCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhh--hhcCCCCcC-EEEE
Confidence 468999999999876432 234567899999999999889999999999999999876310 000112454 7888
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
..++||+........+... . +.+..++...+ |+++|++++++ ++++|++.+ +.|...+ +++|.
T Consensus 86 ~~~~~~~~~~~~~~~g~~~-~---~~~~~~~~~~~---d~~~l~~~i~~---~~~~v~~~~---~~g~~~~----~~~i~ 148 (390)
T 3b8x_A 86 PAVSWSTTYYPLQQYGLRV-K---FVDIDINTLNI---DIESLKEAVTD---STKAILTVN---LLGNPNN----FDEIN 148 (390)
T ss_dssp ESSSCHHHHHHHHHTTCEE-E---EECBCTTTCSB---CHHHHHHHCCT---TEEEEEEEC---GGGCCCC----HHHHH
T ss_pred CCCCcHHHHHHHHHcCCEE-E---EEecCccccCc---CHHHHHHHhCc---CCeEEEEEC---CccChhh----HHHHH
Confidence 9999877655433222211 1 11111111122 89999999875 788888642 3455566 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecccccc----CCCcceeEEEecH-HHHhhcCc---CC---
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILGKALG----GGVIPVSAVLADK-EVMLCIQP---GE--- 319 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~sK~l~----gG~~~ig~v~~~~-~~~~~~~~---~~--- 319 (470)
++|++||++||+||+|+ |.... ...++..+|+.+|||..+ +| ..|++++++ ++.+.++. ..
T Consensus 149 ~l~~~~~~~li~D~a~~~g~~~~-----~~~~g~~~~~~~~s~~~~k~~~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~ 221 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESMGATFN-----NKCAGTFGLMGTFSSFYSNHIATM--EGGCIVTDDEEIYHILLCIRAHGWTR 221 (390)
T ss_dssp HHHTTSCCEEEEECTTCTTCEET-----TEETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTBST
T ss_pred HHHHHcCCEEEEECcCcccCEEC-----CcccccccceEEEEccCCCCCccC--CceEEEeCCHHHHHHHHHHHhcCCCc
Confidence 99999999999999998 43222 234566678888876544 33 347788765 55543321 11
Q ss_pred -------------------------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEE
Q 012138 320 -------------------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374 (470)
Q Consensus 320 -------------------------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~ 374 (470)
.+.++..+++.++++.+.++.++ ++.++.+++.+++.+.|+++ | .+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~-~~~~ 294 (390)
T 3b8x_A 222 NLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH----P-YLDV 294 (390)
T ss_dssp TSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC----S-SEEE
T ss_pred cccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC----C-Cccc
Confidence 12233478888888888776664 46777788888888877653 2 2222
Q ss_pred Ee--cccee--EEEEeccCCCchhHHHHHHHHHHcCceeccC---C---C-----------------------CEEEEec
Q 012138 375 VR--GRGLF--NAVEFDKTALPVSAYDICLKMKERGILAKPT---H---D-----------------------TIVRLTP 421 (470)
Q Consensus 375 ~~--~~g~~--~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~---~-----------------------~~iR~~~ 421 (470)
.. ....+ +.+.+.... +.+..++.+.|.++||.+.+. . . +.+||++
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 373 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDS-GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGN 373 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTS-CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEEC
T ss_pred CCCCCCcccEEEEEEecCcC-cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeC
Confidence 11 12333 344444210 125788999999999988752 1 1 2599999
Q ss_pred CCCCCHHHHHHHHHHH
Q 012138 422 PLSISSNELQEGSKAL 437 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l 437 (470)
...+|++|++++++.|
T Consensus 374 ~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 374 HQIELFDEIDYLREVL 389 (390)
T ss_dssp CSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999876
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-22 Score=197.44 Aligned_cols=297 Identities=9% Similarity=-0.023 Sum_probs=190.0
Q ss_pred ccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 109 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 109 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
+.+..+.++...+++++++++.|.+.+++++||++|+..+++.+.+ +|+ .||+..+.|++..........
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~---------~Gd-~Vi~~~~~y~~~~~~~~~~l~ 143 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE---------QGD-HVLMTNTAYEPSQDFCSKILS 143 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCC---------TTC-EEEEETTSCHHHHHHHHHTGG
T ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHHHH
Confidence 3333445677899999999999988888889999999999886543 455 788888887764321111000
Q ss_pred CcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh--cCcEEEEecc
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILMIADEI 266 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev 266 (470)
.. ...+..++.+|+++|++++++ ++++|+++.++||+|.+.| +++|.++|++ ||+++|+|++
T Consensus 144 ~~---------G~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 144 KL---------GVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp GG---------TCEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred Hc---------CcEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECC
Confidence 00 012355666799999998875 7999999999999999998 9999999999 9999999999
Q ss_pred ccCCcccCCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh
Q 012138 267 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD 343 (470)
Q Consensus 267 ~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~ 343 (470)
|+.. ...... + ++ .|++ +++|.+++ |...+|++++++++++.+...........++..++.+...++.+..
T Consensus 208 ~a~~-~~~~p~--~-~g--~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~ 281 (415)
T 2fq6_A 208 WAAG-VLFKAL--D-FG--IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGV 281 (415)
T ss_dssp TTTT-TSSCGG--G-GT--CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred Cccc-ccCCcc--c-cC--CeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH
Confidence 9832 111111 1 23 4665 78899985 3214689999888777665432211223466666666666654432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----hCCCceE---------EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec
Q 012138 344 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK 410 (470)
Q Consensus 344 ~~~~~~~~~~~~~l~~~L~~l~~----~~p~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~ 410 (470)
..++..++...+.+.|++... .+|.... ..++.|.++.+.+.......+...+.+.|...++.++
T Consensus 282 --r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s 359 (415)
T 2fq6_A 282 --RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYS 359 (415)
T ss_dssp --HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSC
T ss_pred --HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEecc
Confidence 334445555566665554310 0111000 0023577888887642000245555555542232221
Q ss_pred ------------c------------C-CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 411 ------------P------------T-HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 411 ------------~------------~-~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
| + .++.|||++.+..++++|+.+.++|++
T Consensus 360 ~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 360 WGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 1 247899999998888888888888764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=197.15 Aligned_cols=280 Identities=18% Similarity=0.161 Sum_probs=183.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch---hcccCCc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA---ISMSCDN 190 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~---~~~~~~~ 190 (470)
+.++...+++++++++.|.+.+++++||++|+..+++.+.+ +|+ .|++..+.|++..... ....+
T Consensus 79 ~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~---------~Gd-~Vi~~~~~y~~~~~~~~~~~~~~G-- 146 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLAR---------AGD-SVVTTDRLFGHTLSLFQKTLPSFG-- 146 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHTHHHHTT--
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhC---------CCC-EEEEcCCCchhHHHHHHHHHHHcC--
Confidence 45677899999999999998899999999999999987754 455 7888899986644321 11111
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
..+..++.+|+++|++++++ ++++|++|.++||+|.+.+ +++|.++|++||++||+|++|+.
T Consensus 147 ----------~~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~- 208 (430)
T 3ri6_A 147 ----------IEVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTP- 208 (430)
T ss_dssp ----------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSC-
T ss_pred ----------CEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-
Confidence 12456777799999999976 8999999988999999998 99999999999999999999972
Q ss_pred cccCCccccccCCCCcceeeccccccC-CCcceeEEEe---cHHH------------------HhhcCc-CCccCCCCCC
Q 012138 271 ARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLA---DKEV------------------MLCIQP-GEHGSTFGGN 327 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~sK~l~g-G~~~ig~v~~---~~~~------------------~~~~~~-~~~~~t~~~~ 327 (470)
+.......++.+..+.+++|.++| |. .+|.++. +..+ ++..+. .........+
T Consensus 209 ---~~~~~~~~~g~div~~S~sK~l~g~g~-~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~ 284 (430)
T 3ri6_A 209 ---PYLLEAKRLGVDIEVLSSTKFISGGGT-SVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLS 284 (430)
T ss_dssp ---TTTCCGGGGTCSEEEEECCCEEETTEE-ECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ---cccCChHHcCCEEEEECCcccccCCCC-ceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCC
Confidence 222222334554445688899986 33 3444443 2111 111111 0011122357
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-----------------ccce-eEEEEeccC
Q 012138 328 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-----------------GRGL-FNAVEFDKT 389 (470)
Q Consensus 328 ~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-----------------~~g~-~~~~~~~~~ 389 (470)
+..++.+...++.+.. ..++..+++.++.+.|++ +| .+..+. +.|. ++++++...
T Consensus 285 ~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~~----~p-~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~ 357 (430)
T 3ri6_A 285 PHNAYLQSLGLETMAL--RIERSCQNAQELAHWLLS----IP-QVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK 357 (430)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT----CT-TCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH
T ss_pred HHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhC----CC-CccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH
Confidence 7777766666665532 334445556666665544 33 343332 2366 888988632
Q ss_pred CCchhHHHHHHHHHHcCceeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 390 ALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~~~---------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..+.+|.+.|+..++.++.+ .++.|||++. .|+++++++.|+++|
T Consensus 358 ---~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 358 ---EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQAL 429 (430)
T ss_dssp ---HHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHhh
Confidence 35677777776555443322 2578999954 466777777777766
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-21 Score=186.93 Aligned_cols=316 Identities=13% Similarity=0.083 Sum_probs=200.2
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHcc-ccCC-----C-C--CCCcHHHHHHHHhhhhCCC---eEEecCCh-h
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-LSSR-----A-F--YNDKFPVFAERLTSMFGYD---MVLPMNTG-A 142 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-----~-~--~~~~~~~l~~~l~~~~~~~---~v~~~~sG-t 142 (470)
+++++..+.. ..+|.+++++.+.++... .... . + ..+...++++++++++|.+ ++++++|+ +
T Consensus 3 ~~~~~~~g~~-----~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt 77 (360)
T 1w23_A 3 QVFNFNAGPS-----ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS 77 (360)
T ss_dssp CCEECCSSSC-----CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceEeecCCCc-----CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence 3455555522 267999999998875430 0000 0 1 1124678899999998764 79999888 9
Q ss_pred HHHHHHHHHHHHhchhcccCCCCC--cEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHH-HHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDE--AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK-IFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~--~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~-~l~ 219 (470)
+|++.++..+.. +++ ..|+....+|+. ...+ ...+ ... +.+..++.. +.|+++|++ +++
T Consensus 78 ~al~~~~~~l~~---------~~~~g~~vi~~~~~~~~-~~~~-~~~g-~~~---~v~~~~~~~---~~d~~~l~~~~i~ 139 (360)
T 1w23_A 78 LQFTMLPMNLLT---------KGTIGNYVLTGSWSEKA-LKEA-KLLG-ETH---IAASTKANS---YQSIPDFSEFQLN 139 (360)
T ss_dssp HHHHHHHHHHCC---------TTCEEEEEECSHHHHHH-HHHH-HTTS-EEE---EEEECGGGT---SCSCCCGGGCCCC
T ss_pred HHHHHHHHHhcC---------CCCcccEEEecchhHHH-HHHH-HHhC-CeE---EeecccccC---cCCccchHhhccC
Confidence 999999886643 222 234444444322 1111 1112 111 011100000 126777777 664
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~g 297 (470)
. ++++|++++++||+|.+++ +++++||++||+||+|+.+... .....+ |++ +++|.+++
T Consensus 140 ~---~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~ 200 (360)
T 1w23_A 140 E---NDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGP 200 (360)
T ss_dssp T---TEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSC
T ss_pred C---CCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCC
Confidence 3 7899987777999999984 2334899999999999844322 112222 554 67798873
Q ss_pred CCcceeEEEecHHHHhhcCcCC-----------ccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQPGE-----------HGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~-----------~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L 361 (470)
. ++|++++++++++.+.... .+.++ +.+..+++++.++++.+.+ +.+.++.+++++++.+.|
T Consensus 201 -~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L 278 (360)
T 1w23_A 201 -S-GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTI 278 (360)
T ss_dssp -T-TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2 6899999999888775432 11222 3567777777788887654 346677777788887777
Q ss_pred HHHHhhCCCceEEE--e-cc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHH
Q 012138 362 FKIQQQFPNYVKEV--R-GR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 362 ~~l~~~~p~~~~~~--~-~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
+++. ..+... . .. +.++++.+... .+..++.+.|.++||.+.++. .+++|++++..+++++++++++
T Consensus 279 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~ 351 (360)
T 1w23_A 279 DESN----GFYVGHAEKGSRSLMNVTFNLRNE---ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRE 351 (360)
T ss_dssp HTTT----TSSEESSCGGGBCSSEEEEECSSH---HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHH
T ss_pred HHcc----CcccccCCchhccCcEEEEEcCCC---ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHH
Confidence 6642 111221 1 12 33666655421 256788999999999998764 5789999988889999999999
Q ss_pred HHHHHHh
Q 012138 436 ALHDVLE 442 (470)
Q Consensus 436 ~l~~~l~ 442 (470)
+|+++++
T Consensus 352 ~l~~~~~ 358 (360)
T 1w23_A 352 LMIQFKE 358 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999886
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-21 Score=188.34 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=201.0
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHH-hhhhC-CCeEEecCChhHHHHHHHHHH-HHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERL-TSMFG-YDMVLPMNTGAEGVETALKLA-RKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~~~v~~~~sGteA~~~al~~~-~~~~~~~~~~~~g~~~ 168 (470)
.++++.+++.+.++...+++ +.+...++++.+ ++++| .+++++++||++|+..+++.+ .. +|+ .
T Consensus 14 ~~~~i~~a~~~~~~~~~~~~---~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~---------~Gd-~ 80 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYTN---YGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRK---------KGK-Y 80 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCSS---SCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCT---------TCC-E
T ss_pred CcHHHHHHHHHHHHcCCccc---CCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCC---------CcC-E
Confidence 56788999999987754321 234578999999 99999 889999999999999999876 33 465 7
Q ss_pred EEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHH
Q 012138 169 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 248 (470)
Q Consensus 169 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~ 248 (470)
||+..++|.+.... +...+.... +.+..++...+ |+++|++++.....++++|+ + .|++|.+.+ ++
T Consensus 81 Vi~~~~~~~~~~~~-~~~~G~~~~---~v~~~~~~~~~---d~~~l~~~i~~~~~~tk~v~--~-~~~~G~~~~----~~ 146 (377)
T 3ju7_A 81 ALMPSFTFPATPLA-AIWCGLEPY---FIDISIDDWYM---DKTVLWDKIEELKEEVAIVV--P-YATFGSWMN----LE 146 (377)
T ss_dssp EEEESSSCTHHHHH-HHHTTCEEE---EECBCTTTCSB---CHHHHHHHHHHHGGGEEEEC--C-BCGGGBCCC----CH
T ss_pred EEECCCCcHHHHHH-HHHcCCEEE---EEecCCccCCc---CHHHHHHHHhcCCCCceEEE--E-ECCCCCccC----HH
Confidence 88888887554332 222221111 11111111222 89999999843211288887 3 668899987 99
Q ss_pred HHHHHHHhcCcEEEEecccc-CCcccCCccccccC-CCCccee--ecc--ccccCCCcceeEEEe-cHHHHhhcCcCC--
Q 012138 249 AVRDLCSKYNILMIADEIQS-GLARSGRMLASDWE-EVRPDMV--ILG--KALGGGVIPVSAVLA-DKEVMLCIQPGE-- 319 (470)
Q Consensus 249 ~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~-~~~pdi~--s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~~-- 319 (470)
+|.++|+ ||++||+|++|+ |....+. .. +...|+. ||+ |.+++| ..|+++. ++++.+.++...
T Consensus 147 ~i~~la~-~~~~vi~D~a~a~g~~~~~~-----~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~ 218 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPGFGLMNGGM-----HYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNF 218 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTCTTCEETTE-----ETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBT
T ss_pred HHHHHHh-cCCEEEEECCCccCCeECCE-----eccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhc
Confidence 9999999 999999999998 2111121 12 1112444 443 888875 5566664 566665543221
Q ss_pred ----------ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCceEE-E-eccceeEEEEe
Q 012138 320 ----------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKE-V-RGRGLFNAVEF 386 (470)
Q Consensus 320 ----------~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~p~~~~~-~-~~~g~~~~~~~ 386 (470)
.+..+..+++.++.+.+.++.+ +.+.++.+++.+++.+.|.++... .+ .... . .....++.+.+
T Consensus 219 g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 295 (377)
T 3ju7_A 219 GFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKG-WQLQKTEAVIQQFMPILC 295 (377)
T ss_dssp TBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTT-CBCCCCSCBCCSSEEEEC
T ss_pred CCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCcccc-ccCCCCCcceEEEEEEEe
Confidence 1335567888888887777655 346677778888888888775321 11 1100 0 11112334433
Q ss_pred ccCCCchhHHHHHHHHHHcCceeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 387 DKTALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+.. .+.+++.+.|.++||.+.... .+.+||.....+|++|++++++.|.+++
T Consensus 296 ~~~---~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 296 PEE---VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp CTT---SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC--
T ss_pred CCh---hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 322 147899999999999875321 3568998888899999999999998887
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
.
T Consensus 373 ~ 373 (377)
T 3ju7_A 373 V 373 (377)
T ss_dssp -
T ss_pred h
Confidence 6
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=191.41 Aligned_cols=337 Identities=12% Similarity=0.022 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC-------eEEecCChhHHHHHHHHHHHHhchhc---
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYVK--- 159 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~-------~v~~~~sGteA~~~al~~~~~~~~~~--- 159 (470)
.+|.+.+++.+.+.........+ ..++..++.+++++++|.+ ..++++||++|+..++.+++......
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 57889998888775533222111 1233456777888888876 34579999999999988775421110
Q ss_pred ccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
.|.+.++..|++..++ |.....+....+..... .+..++...+ |+++|++++++ ++++|++...+|++|.
T Consensus 148 ~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~~~---v~~~~~~~~~---d~~~l~~~i~~---~t~~v~~~~~~n~tG~ 217 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANV-QVCWEKFARYFEVELKE---VKLSEGYYVM---DPQQAVDMVDE---NTICVAAILGSTLNGE 217 (502)
T ss_dssp TTCCCSCCEEEEETTC-CHHHHHHHHHTTCEEEE---ECCBTTBCSC---CHHHHHHHCCT---TEEEEEEEBSCTTTCC
T ss_pred cCCCCCCcEEEEcCCc-hHHHHHHHHHcCceeEE---EecCCCcCcC---CHHHHHHHHhh---CCEEEEEecCCCCCCc
Confidence 1211223367777766 44433333333321111 1111111122 89999999876 7888886666999999
Q ss_pred ccCChhhHHHHHHHHHhc------CcEEEEeccccCCcc---cCCc-cccccCCCCccee--eccccccCCCcceeEEEe
Q 012138 240 IIPPDGYLKAVRDLCSKY------NILMIADEIQSGLAR---SGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVLA 307 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~------gillI~Dev~~g~g~---~G~~-~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~ 307 (470)
+.| +++|.++|++| |++|++|++|+++.. .+.. +.+... ..|++ +..|.+.++. ++|+++.
T Consensus 218 ~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~--~~D~v~~s~hK~l~~p~-g~G~~~~ 290 (502)
T 3hbx_A 218 FED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLP--LVKSINVSGHKYGLVYA-GIGWVIW 290 (502)
T ss_dssp BCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST--TEEEEEEETTTTTCCCS-SCEEEEE
T ss_pred ccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCC--CceEEEECcccccCCCC-CeEEEEE
Confidence 998 99999999999 999999999986531 1111 112211 23655 4447776776 8898876
Q ss_pred c-HHHH-hhcC--cCCccC-------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 308 D-KEVM-LCIQ--PGEHGS-------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 308 ~-~~~~-~~~~--~~~~~~-------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+ ++.+ +.+. +...+. .++.+....++..++++.+.. ....++..++++++.+.|+++. .+.
T Consensus 291 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~-----~~~ 365 (502)
T 3hbx_A 291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTE-----RFN 365 (502)
T ss_dssp SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----CEE
T ss_pred eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEE
Confidence 5 3333 2221 111111 123333344555555665544 3455666677777777776642 233
Q ss_pred EEe--ccceeEEEEeccCCCchhHHHHHHHHHHcCceecc----C---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 374 EVR--GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T---HDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 374 ~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
.+. +...++.+.+.... ..+..++.+.|.++|+++.. . +..++|+++...+|+++++.+++.|+++++ +
T Consensus 366 ~~~~~~~~~~v~f~~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~-~ 443 (502)
T 3hbx_A 366 IVSKDEGVPLVAFSLKDSS-CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR-E 443 (502)
T ss_dssp ECSCSSSSSEEEEEESSCS-SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-H
T ss_pred EEeCCCCceEEEEEecCCC-cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH-H
Confidence 332 25567777665421 13566899999999998642 1 246899999999999999999999999998 8
Q ss_pred cCCCCCCC
Q 012138 445 LPKMRKPK 452 (470)
Q Consensus 445 ~~~~~~~~ 452 (470)
+++.....
T Consensus 444 l~~~~~~~ 451 (502)
T 3hbx_A 444 LDELPSRV 451 (502)
T ss_dssp HHTCC---
T ss_pred HHhCcccc
Confidence 77655433
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-20 Score=186.56 Aligned_cols=335 Identities=11% Similarity=-0.008 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC-------eEEecCChhHHHHHHHHHHHHhchh---c
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYV---K 159 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~-------~v~~~~sGteA~~~al~~~~~~~~~---~ 159 (470)
.+|.+.+++.+.++........+ ...+..++.+++++++|.+ .+++|+||++|+..++..++..... .
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888888887775432221111 1233567788888888754 3899999999999999887642110 0
Q ss_pred ccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcc
Q 012138 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 239 (470)
Q Consensus 160 ~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~ 239 (470)
+|.+..+..|++.. .|.....+....+-... +.+..++...+ |+++|++++++ ++++|++...+|++|.
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~---~v~~~~~~~~~---d~~~l~~~i~~---~t~~v~~~~~~n~tG~ 202 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELR---EIPMRPGQLFM---DPKRMIEACDE---NTIGVVPTFGVTYTGN 202 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEE---ECCCBTTBCSC---CHHHHHHHCCT---TEEEEECBBSCTTTCB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEE---EEecCCCCCeE---CHHHHHHHHhh---CCEEEEEEcCCcCCcc
Confidence 11110123666655 46554444333332111 11111111222 89999999976 7888887766999999
Q ss_pred ccCChhhHHHHHHHHHhc------CcEEEEeccccCCcc---cCCc-cccccCCCCcceeec--cccccCCCcceeEEEe
Q 012138 240 IIPPDGYLKAVRDLCSKY------NILMIADEIQSGLAR---SGRM-LASDWEEVRPDMVIL--GKALGGGVIPVSAVLA 307 (470)
Q Consensus 240 ~~~~~~~l~~l~~l~~~~------gillI~Dev~~g~g~---~G~~-~~~~~~~~~pdi~s~--sK~l~gG~~~ig~v~~ 307 (470)
+.| +++|.++|++| |+++++|++|.++.. .+.. +.+... ..|.+++ .|.+.+|+ ++|++++
T Consensus 203 ~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~hK~~~~~~-~~G~~~~ 275 (452)
T 2dgk_A 203 YEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP--RVKSISASGHKFGLAPL-GCGWVIW 275 (452)
T ss_dssp BCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST--TEEEEEEETTTTTCCCS-SCEEEEE
T ss_pred cCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCC--CCcEEEECcccccCCCC-CeEEEEE
Confidence 998 99999999996 999999999997532 1111 111111 2465554 48666777 9999998
Q ss_pred cHH-HH-hhcC--cCCccC-------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 308 DKE-VM-LCIQ--PGEHGS-------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 308 ~~~-~~-~~~~--~~~~~~-------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
+++ +. +.+. +...+. .++.+.....+..++++.+.. +++.++..++++++.+.|+++ | .+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~~ 350 (452)
T 2dgk_A 276 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL----G-PYE 350 (452)
T ss_dssp SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S-SEE
T ss_pred cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----C-CeE
Confidence 643 32 3332 111110 112222233334444554433 345666667777777777664 1 233
Q ss_pred EEe-----ccceeEEEEeccCCC-chhHHHHHHHHHHcCceec----cC---CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 374 EVR-----GRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAK----PT---HDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 374 ~~~-----~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~----~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.+. +...++.+.+..... ..+..++.+.|.++|+.+. |. +..++|+++...+|+++++++++.|+++
T Consensus 351 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 351 FICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp EEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 332 355677776653210 1245789999999999654 22 2458999998888999999999999999
Q ss_pred HhcccCCCCC
Q 012138 441 LELDLPKMRK 450 (470)
Q Consensus 441 l~~~~~~~~~ 450 (470)
++ ++++...
T Consensus 431 ~~-~~~~~~~ 439 (452)
T 2dgk_A 431 LK-YLSDHPK 439 (452)
T ss_dssp HH-HHHHCGG
T ss_pred HH-HHHhCCC
Confidence 98 7765433
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=187.04 Aligned_cols=306 Identities=13% Similarity=0.060 Sum_probs=188.8
Q ss_pred HHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhchh---cccCCCC-CcEEEEEccCccccccchhcccCCc
Q 012138 119 FPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYV---KKKFSID-EAIIVSCCGCFHGRTLAAISMSCDN 190 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~~---~~~~~~g-~~~ii~~~~~yhg~~~~~~~~~~~~ 190 (470)
..++.+++++++|.+ .++|++||++|+..+++.++.+.+. .+|.... +..|++.... |.+...+....+..
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~-h~s~~~~~~~~g~g 212 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGFG 212 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcc-hHHHHHHHHHcCCC
Confidence 445667788888754 6999999999999999988753110 1111001 3255555555 55544433332211
Q ss_pred ccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEE
Q 012138 191 EAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 262 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI 262 (470)
. ..+..+|.+ |+++|++++++. +.++++|+++..+|++|.+.| +++|.++|++||++++
T Consensus 213 -~--------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lh 279 (504)
T 2okj_A 213 -T--------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLH 279 (504)
T ss_dssp -G--------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEE
T ss_pred -c--------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEE
Confidence 0 012233332 899999999762 225788888777999999998 9999999999999999
Q ss_pred EeccccCCcccCCccccccCCC-Ccceeecc--ccccCCCcceeEEEecH-HHHhh-c---CcCCcc-CC----------
Q 012138 263 ADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVMLC-I---QPGEHG-ST---------- 323 (470)
Q Consensus 263 ~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~~~-~~~~~-~---~~~~~~-~t---------- 323 (470)
+|++|+++......+.....++ .+|+++++ |.+++++ ++|++++++ ++++. + .+...+ ..
T Consensus 280 vD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 358 (504)
T 2okj_A 280 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGD 358 (504)
T ss_dssp EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGG
T ss_pred EehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc-ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCccc
Confidence 9999997543322221222233 46877665 9888776 999999875 45542 1 111111 11
Q ss_pred ------CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE---eccceeEEEEeccCC----
Q 012138 324 ------FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDKTA---- 390 (470)
Q Consensus 324 ------~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~---~~~g~~~~~~~~~~~---- 390 (470)
.....+.+.+++.++..-.-+++.++..++++++.+.|+++ | .+..+ .+...++.+......
T Consensus 359 ~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~~~~~~~~p~~~~v~f~~~~~~~~~~ 433 (504)
T 2okj_A 359 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----E-EFEMVFNGEPEHTNVCFWYIPQSLRGV 433 (504)
T ss_dssp GSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----T-TEEESSSSCCSSSCEEEEECCGGGSSC
T ss_pred CCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEEecCCCCeEEEEEEEeCcccccc
Confidence 01235555555554432111345666777777777777653 2 23332 244555555442210
Q ss_pred -C--------chhHHHHHHHHHHcCce-eccC---C-CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 391 -L--------PVSAYDICLKMKERGIL-AKPT---H-DTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 391 -~--------~~~~~~~~~~l~~~Gv~-~~~~---~-~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. .....++.+.|.++|++ +.+. + .+++|+++. ..+|+++|++++++|+++++ ++
T Consensus 434 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~-~~ 502 (504)
T 2okj_A 434 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL 502 (504)
T ss_dssp CCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 0 00145788899999964 3321 2 258999985 77999999999999999987 64
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=193.91 Aligned_cols=269 Identities=12% Similarity=0.091 Sum_probs=171.7
Q ss_pred HHHHHHHhhhhC-------C-CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCc---EEEEEccCccccccchhcccC
Q 012138 120 PVFAERLTSMFG-------Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA---IIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 120 ~~l~~~l~~~~~-------~-~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~---~ii~~~~~yhg~~~~~~~~~~ 188 (470)
.++.+.++++++ . ++|++|+|+++|+..+++.+.. +|+. .|++..|+|.+..........
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~---------~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~ 141 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS---------LARSQPVSVVAAAPFYSTYVEETTYVRS 141 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH---------TSSSSSEEEEECSSCCTHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC---------CCCCCcceEEEcCCCchhHHHHHHHcCC
Confidence 566666665543 3 5899999999999999998865 4541 788899998654433322221
Q ss_pred CcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC--cEEEEecc
Q 012138 189 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEI 266 (470)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g--illI~Dev 266 (470)
. +..++. |.+.++ . .++++|++..++||||.++ + +|.+ ++|+ ++||+||+
T Consensus 142 ~-------------~~~~~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~-~-----~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 142 G-------------MYKWEG-DAWGFD----K--KGPYIELVTSPNNPDGTIR-E-----TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp T-------------TEEEEE-ESTTCC----C--CSCEEEEEESSCTTTCCCC-C-----CCC-------CCCEEEEECT
T ss_pred e-------------EEEecC-CHHHcC----C--CCCEEEEECCCCCCCchhH-H-----HHHH--HhhcCCCEEEEeCC
Confidence 1 112221 223332 1 2678887555599999999 4 2333 2256 99999999
Q ss_pred ccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--
Q 012138 267 QSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-- 342 (470)
Q Consensus 267 ~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~-- 342 (470)
|.. +. ...+.. ..+....+.||||.++ +|+ |+||+++ ++++++.+.......+++.+.+++.++.++|+...
T Consensus 194 y~~-~~-~~~l~~-~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 269 (391)
T 3bwn_A 194 YYW-PH-YTPITR-RQDHDIMLFTFSKITGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKET 269 (391)
T ss_dssp TCS-TT-TSCCCC-CBCCSEEEEEHHHHHSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CC-CCcccc-CCCCeEEEEechhhcCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchh
Confidence 973 11 111111 1222233459999998 898 9999997 88998887654433356678898888888887532
Q ss_pred -------h---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE--------------EeccceeEEEEeccCCCchhHHHH
Q 012138 343 -------D---EKLAERSAHLGEELRQHLFKIQQQFPNYVKE--------------VRGRGLFNAVEFDKTALPVSAYDI 398 (470)
Q Consensus 343 -------~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~~ 398 (470)
+ +.+++.++++.+.+.+.|+++ | .+.. .+..|.++++.+... ..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------~~~ 338 (391)
T 3bwn_A 270 CKSESESENFFKYGREMMKNRWEKLREVVKES----D-AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------TDL 338 (391)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC----S-SEECCCCCCEEETTTTEEECCCCSEEEEEESSS------CCH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhC----C-CcccccCCccccccccccCCCcceEEEecCCcH------HHH
Confidence 1 345566666777777766653 1 1211 123344566665421 245
Q ss_pred HHHHHHcCceeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 399 CLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 399 ~~~l~~~Gv~~~~~~-----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+.|.++||.+.|+. .+++||++. .+++++++++++|.++++
T Consensus 339 ~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 339 VSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp HHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 667788899998752 679999954 589999999999998876
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=193.76 Aligned_cols=283 Identities=13% Similarity=0.017 Sum_probs=186.9
Q ss_pred CCcHHHHHHHHhhhhCCC-eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 116 NDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~-~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
.....++++++++ ++.+ .+++++|+++|+..+++++.. +|+ .|++..++|++........+....+
T Consensus 56 ~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~---------~gd-~Vlv~~~~h~s~~~~~~~~G~~~~~-- 122 (446)
T 2x3l_A 56 EEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQ---------KKG-DILMARNVHKSVLHALDISQQEGHF-- 122 (446)
T ss_dssp SSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTT---------SSS-CEEECTTCCHHHHHHHHHHTCCEEE--
T ss_pred chHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcC---------CCC-EEEEecCccHHHHHHHHHcCCeEEE--
Confidence 4556788999999 8865 588999999999999997743 454 7888888866544433332222211
Q ss_pred CCCCC--CCC---eeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 195 GFGPL--LPG---HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 195 ~~~~~--~~~---~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
.+. ..+ ...+ |+++| +. +++++|++++ .|++|.+.| +++|.++|++||++||+||+|++
T Consensus 123 --v~~~~~~~~~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 123 --IETHQSPLTNHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp --CEEEECTTTSSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCT
T ss_pred --EeCeeccccCcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhh
Confidence 111 000 0222 45655 22 2678888877 777999998 99999999999999999999986
Q ss_pred -CcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHh--hcCcC-CccCCCCCCHHHHHHHHHHHHHHhh
Q 012138 270 -LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML--CIQPG-EHGSTFGGNPLASAVAIASLDVIRD 343 (470)
Q Consensus 270 -~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~--~~~~~-~~~~t~~~~~~~~aaa~a~l~~~~~ 343 (470)
+.+.+..+..... .+|++ +++|.++++. ++|++++++++++ .+... ....+.+.+...+++..++++.+++
T Consensus 187 ~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~~-g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~ 263 (446)
T 2x3l_A 187 HFGLQGFPDSTLNY--QADYVVQSFHKTLPALT-MGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKT 263 (446)
T ss_dssp TTTSTTSCCCGGGG--TCSEEEECHHHHSSSCT-TCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCChHHc--CCCEEEECCcccccccc-ccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 3333322222222 35776 4559888776 8899999877654 22211 1223445677777777777777765
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-cceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEE
Q 012138 344 E---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRL 419 (470)
Q Consensus 344 ~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~ 419 (470)
. ++.++.+++.+++++. . +..... .+..+++.+. . .+..++.+.|+++||.+...+.+++|+
T Consensus 264 ~g~~~~~~~~~~l~~~l~~~------g----~~~~~~~~~~~l~i~~~-~---~~~~~l~~~L~~~GI~v~~~g~~~iRi 329 (446)
T 2x3l_A 264 YDSTLFFAKRAQLIECLENK------G----FEMLQVDDPLKLLIKYE-G---FTGHDIQNWFMNAHIYLELADDYQALA 329 (446)
T ss_dssp CCCHHHHHHHHHHHHHHHHH------T----CEEEECSSTTEEEEECT-T---SCHHHHHHHHHHTTEEESEECSSCEEE
T ss_pred hCHHHHHHHHHHHHHHHHHc------C----CEECcCCCCeEEEEEeC-C---cCHHHHHHHHHHCCCEEEecCCCEEEE
Confidence 2 2667777776666654 1 222222 2345555443 2 367889999999999997344678999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 420 TPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 420 ~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+++..+|++++ +++++|.++++ ++.
T Consensus 330 ~~~~~~t~e~i-~l~~aL~~~~~-~~~ 354 (446)
T 2x3l_A 330 ILPLWHHDDTY-LFDSLLRKIED-MIL 354 (446)
T ss_dssp ECCCCCTTCCC-CHHHHHHHHHT-CCC
T ss_pred EeecCCCHHHH-HHHHHHHHHHH-hhc
Confidence 99988899999 99999999998 774
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=192.53 Aligned_cols=316 Identities=14% Similarity=0.093 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHHcc---ccCCCCCC------CcHHHHHHHHhhhhCCCe-----EEecCChhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQAEKLT---LSSRAFYN------DKFPVFAERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~---~~~~~~~~------~~~~~l~~~l~~~~~~~~-----v~~~~sGteA~~~al~~~~~~~~ 157 (470)
.+|.|.+++.+.+.+.. +....++. .....+.+++++++|.+. .+.+++|++|+..++..+..
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~--- 132 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE--- 132 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcC---
Confidence 57999999988876421 11111111 123345588888888652 25556677999888877654
Q ss_pred hcccCCCCCcEEEEEccCccccccchh-------cccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 158 VKKKFSIDEAIIVSCCGCFHGRTLAAI-------SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
+|+ .|++.++.|.+...... ...+.. ......+..++...+ |+++|++++++. ++++|++
T Consensus 133 ------pGD-~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~-~~~v~~~~~~~~~~i---D~d~le~~i~~~--~tklIi~ 199 (483)
T 1rv3_A 133 ------PHG-RIMGLDLPDGGHLTHGFMTDKKKISATSIF-FESMAYKVNPDTGYI---DYDRLEENARLF--HPKLIIA 199 (483)
T ss_dssp ------TTC-EEEEECGGGTCCGGGCCBCSSCBCSHHHHH-SEEEEECBCTTTCSB---CHHHHHHHHHHH--CCSEEEE
T ss_pred ------CCC-EEEEecCccCcCcchhhhhcccCcccccce-EEEEECccccCCCcC---CHHHHHHHHhhc--CCcEEEE
Confidence 566 77888777544322111 100000 000000001111222 899999999843 7888888
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCc-cccccCCCCccee--eccccccCCCcceeEEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~-~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
..+|++ .+.| +++|.++|++||++||+|++|. |+...|.. ..+. ..|++ +++|+++ |. +.|+++
T Consensus 200 -~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-Gp-rgG~i~ 267 (483)
T 1rv3_A 200 -GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GC-RAGMIF 267 (483)
T ss_dssp -CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CC-SCEEEE
T ss_pred -eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CC-CceEEE
Confidence 557877 8887 9999999999999999999987 54333321 1111 23665 5669986 44 779999
Q ss_pred ecHH---------------HHhhcCcCCccC-CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 307 ADKE---------------VMLCIQPGEHGS-TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 307 ~~~~---------------~~~~~~~~~~~~-t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++++ +.+.+....... ..+.+...+++..++++.+.+ +.+.++++++++++.+.|.+++
T Consensus 268 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-- 345 (483)
T 1rv3_A 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG-- 345 (483)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred EcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 8874 222222111111 223455566666667776643 4567778888888888887752
Q ss_pred CCCceEEEec-cc-eeEEEEeccCCCchhHHHHHHHHHHcCceec----cCC-----CCEEEEecCCCCC----HHHHHH
Q 012138 368 FPNYVKEVRG-RG-LFNAVEFDKTALPVSAYDICLKMKERGILAK----PTH-----DTIVRLTPPLSIS----SNELQE 432 (470)
Q Consensus 368 ~p~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~~-----~~~iR~~~~~~~t----~e~i~~ 432 (470)
+..+.+ .+ .+.++.+... +.+..++.+.|.+.||.+. |+. .+.+||+++..+| ++|+++
T Consensus 346 ----~~~~~~~~~~~~~~v~~~~~--g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~ 419 (483)
T 1rv3_A 346 ----YKIVTGGSDNHLILVDLRSK--GTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQK 419 (483)
T ss_dssp ----CEEGGGSCSSSEEEEEGGGG--TCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHH
T ss_pred ----CEeccCCCCCceEEEeccCC--CCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHH
Confidence 222222 12 3445544322 1356778888988999988 653 5789999876556 999999
Q ss_pred HHHHHHHHHhcc
Q 012138 433 GSKALHDVLELD 444 (470)
Q Consensus 433 ~~~~l~~~l~~~ 444 (470)
++++|.++++ .
T Consensus 420 ~~~~l~~~l~-~ 430 (483)
T 1rv3_A 420 VAHFIHRGIE-L 430 (483)
T ss_dssp HHHHHHHHHH-H
T ss_pred HHHHHHHHHH-h
Confidence 9999999998 5
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-20 Score=187.35 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=184.6
Q ss_pred HHHHHHHHhhhhCCCe-EEecCChh-HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 119 FPVFAERLTSMFGYDM-VLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~-v~~~~sGt-eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
.+++++++++++|.+. +++|+||+ .++..++..++.+. +++.||+..+. |......+...+-....
T Consensus 135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~--------~~~~vi~~~~~-h~s~~~~~~~~G~~~~~--- 202 (456)
T 2z67_A 135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY--------GSNVVIYPYAS-HKSPIKAVSFVGMNMRL--- 202 (456)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH--------CCCEEEEECCC-CHHHHHHHHHTTCEEEE---
T ss_pred HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc--------CCCEEEEECCC-cHHHHHHHHHcCCCceE---
Confidence 4568888999988653 89999999 56666777655421 33467777776 44444443333321111
Q ss_pred CCCC--CCeeeecCCCHHHHHHHH-Hhc-CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 197 GPLL--PGHLKVDFGDITALEKIF-KES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 197 ~~~~--~~~~~~~~~d~~~Le~~l-~~~-~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
.+.. .+...+ |+++|++++ ++. ..++.+|++...+|++|.+.| +++|.++|++||+++++||+|+++..
T Consensus 203 v~~~~~~~~~~~---d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~ 275 (456)
T 2z67_A 203 VETVLDGDRVYV---PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN 275 (456)
T ss_dssp ECCEEETTEEEC---CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred EEEeccCCCCCc---CHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH
Confidence 1110 011223 899999999 421 126777765555899999998 99999999999999999999986532
Q ss_pred cCCc-ccccc-CCCCccee--eccccccCCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---h
Q 012138 273 SGRM-LASDW-EEVRPDMV--ILGKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---E 344 (470)
Q Consensus 273 ~G~~-~~~~~-~~~~pdi~--s~sK~l~gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~ 344 (470)
|.. ..... .+ .+|++ +++|.+.++. ++|++++ ++++++.+.+...+... .++ ..++.+++..+.. +
T Consensus 276 -g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~-g~G~l~~~~~~~~~~l~~~~~g~~~-~~~--~~~~~aal~~l~~~~~~ 349 (456)
T 2z67_A 276 -YYLEKLKKAFKY-RVDAVVSSSDKNLLTPI-GGGLVYSTDAEFIKEISLSYPGRAS-ATP--VVNTLVSLLSMGSKNYL 349 (456)
T ss_dssp -HHHHHHHHHHTS-CCSEEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHTTSCSCBC-SHH--HHHHHHHHHHHHHHHHH
T ss_pred -HhhHHHHHhhCC-CCCEEEEcCCCCcCCCC-CeEEEEEcCHHHHhhcCcCCCCCCC-CCH--HHHHHHHHHHHHHHHHH
Confidence 110 10111 11 45766 4569877777 9999999 57777776543333221 222 3333444444433 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCc---eec-----------
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI---LAK----------- 410 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~~~----------- 410 (470)
++.++..++++++.+.|+++....+ +....+. .++.+.+..+. ...++.+.|.++|+ -+.
T Consensus 350 ~~~~~~~~~~~~l~~~L~~~~~~~g--~~v~~~~-~~v~~~~~~~~---~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~ 423 (456)
T 2z67_A 350 ELVKNQKNSKKLLDELLNDLSKKTG--GKFLDVE-SPIASCISVNS---DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYL 423 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS--CCBCCCC-CSSEEEEECSS---CHHHHHHHHHHTTEESCEEECTTCHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC--CEecCCC-CeEEEEEeccc---HHHHHHHHHHHcCCCcceEEeecCccccccc
Confidence 5678888899999999988742111 1111223 45556553222 24678999999985 232
Q ss_pred -cCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 411 -PTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 411 -~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
....+++|+++++.+|+++|++++++|++++
T Consensus 424 ~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 424 GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2225799999998999999999999998754
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-19 Score=183.45 Aligned_cols=306 Identities=15% Similarity=0.086 Sum_probs=189.4
Q ss_pred HHHHHHHHhhhhCCC--eEEecCChhHHHHHHHHHHHHhch---hcccCC-CCCcEEEEEccCccccccchhcccCCccc
Q 012138 119 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGY---VKKKFS-IDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~--~v~~~~sGteA~~~al~~~~~~~~---~~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
..++.+++++++|.+ .++|++|||+|+..++++++.+.. ..+|.. .++..|++.... |.+...+....+...
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~g~- 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGLGT- 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCCCC-
Confidence 456778899998864 799999999999999998874311 111100 002255555555 655554443333210
Q ss_pred ccCCCCCCCCeeeecCC-----CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 193 IRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
..+..+|.+ |+++|++++++. +.++++|+++.++|++|.+.| +++|.++|++||+++|+|
T Consensus 228 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD 295 (515)
T 2jis_A 228 --------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVD 295 (515)
T ss_dssp --------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred --------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEe
Confidence 012233322 899999999762 235888888888999999998 999999999999999999
Q ss_pred ccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH--HHhhc----CcCCcc-----------CCC
Q 012138 265 EIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCI----QPGEHG-----------STF 324 (470)
Q Consensus 265 ev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~--~~~~~----~~~~~~-----------~t~ 324 (470)
++|+++......+.....++ .+|++++ +|.+++++ ++|+++++++ +++.. .+...+ .++
T Consensus 296 ~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 374 (515)
T 2jis_A 296 AAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK 374 (515)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred hhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC-CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence 99997655443332223344 5688766 79988776 8999998766 55431 111100 001
Q ss_pred ------CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-ccceeEEEEeccC---C--Cc
Q 012138 325 ------GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKT---A--LP 392 (470)
Q Consensus 325 ------~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~g~~~~~~~~~~---~--~~ 392 (470)
....+.+.+++.++..-.-+++.++..++++++.+.|+++ | .+..+. +....+.+..... . ..
T Consensus 375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~-g~~~~~~~~~~~v~f~~~p~~~~~~~~~ 449 (515)
T 2jis_A 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR----E-GFELVMEPEFVNVCFWFVPPSLRGKQES 449 (515)
T ss_dssp CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----T-TEEESSCCSSSEEEEEECCGGGTTCTTS
T ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEeCCCCeeEEEEEEeCccccccccc
Confidence 0123444444444432111446677777888888877663 2 232221 2233344433211 0 00
Q ss_pred hh--------HHHHHHHHHHcCceecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 393 VS--------AYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 393 ~~--------~~~~~~~l~~~Gv~~~~-----~~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.. ...+.+.|.++|+.+.. +..+++|+++ +..+|+++|++++++|+++++ ++
T Consensus 450 ~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~-~~ 515 (515)
T 2jis_A 450 PDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ-DL 515 (515)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT-TC
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh-hC
Confidence 01 12367788888976532 2246899998 788999999999999999887 53
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=184.93 Aligned_cols=300 Identities=9% Similarity=0.050 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHHHcccc------CCCC---CCCcHHHHHHHHhhhhCCC---e-EEecCChhHHHHHHHHHHHHhchh
Q 012138 92 CHPKIMKALQEQAEKLTLS------SRAF---YNDKFPVFAERLTSMFGYD---M-VLPMNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~------~~~~---~~~~~~~l~~~l~~~~~~~---~-v~~~~sGteA~~~al~~~~~~~~~ 158 (470)
.+|++++++.+.+...... .... ..+.++++++++++++|.+ + +++|+||++|+..+++.+..
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~---- 90 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK---- 90 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC----
Confidence 6899999999887543110 0001 1224678888999988764 5 46789999999999987643
Q ss_pred cccCCCCCcEEEEEccCccccc-cchhcccCCcccccCCCCCCCCeeeec----CC---CHHHHHHHHHhcCCCeEEEEE
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRT-LAAISMSCDNEAIRGFGPLLPGHLKVD----FG---DITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---d~~~Le~~l~~~~~~~~~vi~ 230 (470)
+|+ .|++..+.+++.. .......+.... +.++ ++ |+++++ ++ +++++|++
T Consensus 91 -----~gd-~vl~~~~~~~~~~~~~~~~~~g~~~~-----------v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~ 148 (362)
T 2c0r_A 91 -----EGQ-TANYVMTGSWASKALKEAKLIGDTHV-----------AASSEASNYMTLPKLQEIQ--LQ---DNAAYLHL 148 (362)
T ss_dssp -----TTC-EEEEEECSHHHHHHHHHHHHHSCEEE-----------EEECGGGTTCSCCCGGGCC--CC---TTEEEEEE
T ss_pred -----CCC-eEEEEecCcHhHHHHHHHHHhCCeEE-----------EecccccccccCCCHHHcc--cC---CCcCEEEE
Confidence 566 5555544433321 111111121111 1111 11 344332 33 37898887
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEec
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD 308 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~ 308 (470)
.+++||+|.++++ +++| ||+++|+||+|+-+.. ...... . |++ +++|.++ .. .+|+++++
T Consensus 149 ~~~~n~tG~~~~~---l~~i------~~~~vivD~a~~~~~~---~~~~~~--~--d~~~~s~~K~~g-~~-G~G~l~~~ 210 (362)
T 2c0r_A 149 TSNETIEGAQFKA---FPDT------GSVPLIGDMSSDILSR---PFDLNQ--F--GLVYAGAQKNLG-PS-GVTVVIVR 210 (362)
T ss_dssp ESEETTTTEECSS---CCCC------TTSCEEEECTTTTTSS---CCCGGG--C--SEEEEETTTTTC-CS-SCEEEEEE
T ss_pred eCCcCccceeccc---cccc------CCCEEEEEChhhccCC---ccchhH--C--cEEEEecccccc-Cc-CcEEEEEc
Confidence 7669999997422 4444 8999999999973211 111221 2 544 7789996 22 47999999
Q ss_pred HHHHhhcCcC------------CccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCce
Q 012138 309 KEVMLCIQPG------------EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYV 372 (470)
Q Consensus 309 ~~~~~~~~~~------------~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~ 372 (470)
+++++.+... .....++.++.+++++.++|+.+.+ +.+.++.+++++++.+.|++++. ++
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~ 286 (362)
T 2c0r_A 211 EDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGG----FY 286 (362)
T ss_dssp GGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTT----SS
T ss_pred HHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCC----cc
Confidence 9988776531 0122356788888888999987654 45677777888888888876420 11
Q ss_pred EEE----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 373 KEV----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 373 ~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
... ...+.++.+.+.. +.+..++++.|.++||.+.++. .+.+|+++...+++|+++++++.|+++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 287 RGCVDVDSRSDMNITFRLAS---EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp EESSCGGGBCSSEEEEECSC---HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHcCCcEEEEEcCC---cchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 111 1123445554432 1367889999999999887653 46799998888899999999999999887
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=187.55 Aligned_cols=287 Identities=10% Similarity=0.074 Sum_probs=184.9
Q ss_pred CHHHHHHHHHHHHHc---cccC-CCCCCCcHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQAEKL---TLSS-RAFYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~~~~~---~~~~-~~~~~~~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
++++++++.++.... .... ..+....+.++++++++++|.+..++ ++||++|++.+++.+.+ +|
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~---------~G 107 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILR---------PG 107 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCC---------TT
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCC---------CC
Confidence 466777776642111 1111 12234557889999999999887654 67999999999986643 45
Q ss_pred CcEEEEEc-cCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEc-cccCCCc
Q 012138 166 EAIIVSCC-GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFE-PIQGEAG 238 (470)
Q Consensus 166 ~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~e-pi~n~~G 238 (470)
+ .|++.. +. |+.+...+.++++ ++..+......+..+++ .|+++|++++++ ++++|+++ +.+||+|
T Consensus 108 d-~Vl~~~~~~-y~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 108 D-ELLYITGKP-YDTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATR 180 (431)
T ss_dssp C-EEEECSSSC-CTTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred C-EEEEeCCCC-chhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCC
Confidence 5 677776 55 5555555444332 11111111122344444 289999999975 89999988 4788998
Q ss_pred cccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCC-cceeEEEecHHHHhhc
Q 012138 239 VIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV-IPVSAVLADKEVMLCI 315 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~-~~ig~v~~~~~~~~~~ 315 (470)
... +...+++|.++|++ ||++||+||+|+.+....... .++.+..+.|++|.++||+ .+.|++++++++++.+
T Consensus 181 ~~~-~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 181 PSF-TISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp CCC-CHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHH
T ss_pred CcC-CHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHH
Confidence 888 88889999999999 999999999999765443322 2344444558999998752 2668899999998877
Q ss_pred CcC----CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCceEEEeccceeEEEEeccCC
Q 012138 316 QPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKEVRGRGLFNAVEFDKTA 390 (470)
Q Consensus 316 ~~~----~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~p~~~~~~~~~g~~~~~~~~~~~ 390 (470)
... ..+.+.+.++..++++...++.+ +...++..+++.++.+.|++++.. +| . ...++.+.++.+.+...
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p-~-~~~~~~~li~~i~l~~~- 331 (431)
T 3ht4_A 257 AYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSP-A-WNAPRTDLIQSVQFDDK- 331 (431)
T ss_dssp HHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEES-C-TTSCCSSSCCEEECCCH-
T ss_pred HHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecC-C-CCCCCccEEEEEEeCCH-
Confidence 541 12222222222233344444443 446677788888888888887532 11 1 11234455788877643
Q ss_pred CchhHHHHHHHHHHcC
Q 012138 391 LPVSAYDICLKMKERG 406 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~G 406 (470)
....++++.|.+..
T Consensus 332 --~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 332 --DRMIAFCQAIQYAS 345 (431)
T ss_dssp --HHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHhcC
Confidence 36788999998873
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=191.63 Aligned_cols=317 Identities=8% Similarity=-0.025 Sum_probs=192.7
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC-----cHHHHHHHHhhhh--------CCCeEEecCC
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND-----KFPVFAERLTSMF--------GYDMVLPMNT 140 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~~--------~~~~v~~~~s 140 (470)
.+..+||..+... + ..++.+.+++.+.+.........|... ...+|++.+++++ ..++|++|+|
T Consensus 55 ~~~~i~l~~g~~~--~-~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGDGL--F-LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCCCG--G-GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcCCC--C-CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 4456788776432 2 244667777766652211110001111 1355555555544 2468999999
Q ss_pred hhHHHHHHHHHH--------HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHH
Q 012138 141 GAEGVETALKLA--------RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 212 (470)
Q Consensus 141 GteA~~~al~~~--------~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 212 (470)
+++|+..+++.+ .. +|+ .|++..|+|.+........+.... ...+ |++
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~---------~Gd-~Vlv~~P~y~~~~~~~~~~g~~~~-----------~~~~---d~~ 187 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDA---------PES-KVVAHAPFYPVFREQTKYFDKKGY-----------VWAG---NAA 187 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTS---------CCE-EEEECSSCCHHHHHHHHHSCBTTE-----------EEEE---EGG
T ss_pred HHHHHHHHHHHHhhccccccCC---------CCC-EEEEeCCCcccHHHHHHHcCCeee-----------eecC---CHH
Confidence 999999999877 33 454 788899998655443333222110 1223 778
Q ss_pred HHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc
Q 012138 213 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG 292 (470)
Q Consensus 213 ~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s 292 (470)
+|++++++ ++++|++..++||+|.++ + +.+ + ++..|.|+.+-+ ..-...... .+...-+.|||
T Consensus 188 ~l~~~~~~---~~k~v~l~~p~NPtG~~~-~-~~l-------~--~~~~i~d~~~~~--~~~s~~~~~-~~~~i~~~S~S 250 (427)
T 2hox_A 188 NYVNVSNP---EQYIEMVTSPNNPEGLLR-H-AVI-------K--GCKSIYDMVYYW--PHYTPIKYK-ADEDILLFTMS 250 (427)
T ss_dssp GGTTCSCG---GGEEEEEESSCTTTCCCC-C-CSS-------T--TCEEEEECTTCS--TTTSCCCSC-BCCSEEEEEHH
T ss_pred HHHHhhcC---CceEEEEcCCCCCccccc-H-HHH-------c--CCCEEEeecccC--CCCCccccC-CCceEEEEeCh
Confidence 88877754 677777555599999999 5 422 2 456777877642 100111111 22222344999
Q ss_pred cccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh----------h---hhHHHHHHHHHHHH
Q 012138 293 KALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR----------D---EKLAERSAHLGEEL 357 (470)
Q Consensus 293 K~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~----------~---~~~~~~~~~~~~~l 357 (470)
|.++ +|+ |+|++++ ++++++.+.......+++.+.+++.++.++|+... + +..++.++++.+++
T Consensus 251 K~~g~~G~-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 251 KFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp HHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCc-eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 9998 898 9999999 58998888765444456678888888877776531 1 12345555566666
Q ss_pred HHHHHHH-HhhC-----CC---ceEEEecc-ceeEEEEeccCCCchhHHHHHHHHH-HcCceeccC-----CCCEEEEec
Q 012138 358 RQHLFKI-QQQF-----PN---YVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-----HDTIVRLTP 421 (470)
Q Consensus 358 ~~~L~~l-~~~~-----p~---~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~-----~~~~iR~~~ 421 (470)
.+.|+++ +..+ |. .+....+. |.|+++.+.. +..++++.|+ ++||.+.|+ ..+++|+++
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-----~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~ 404 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-----EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL 404 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-----GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCC-----cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEe
Confidence 6665543 1110 10 01112333 4555555542 3445777765 779999875 268999995
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 012138 422 PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~ 442 (470)
. .+++++++++++|.++++
T Consensus 405 ~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 405 I--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp S--SCHHHHHHHHHHHHHHHT
T ss_pred c--CCHHHHHHHHHHHHHHHh
Confidence 4 589999999999999987
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=188.48 Aligned_cols=300 Identities=11% Similarity=0.073 Sum_probs=188.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC---eEEe-cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~---~v~~-~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
.+|++.+++.+...........+ ..+...++++++++++|.+ ++++ |+||++|++.+++.+.. +|
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~---------~g 121 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID---------KR 121 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS---------SC
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC---------CC
Confidence 67889998876311110000111 1124578899999998753 7888 99999999999987743 33
Q ss_pred CcEEEEEccCccccccc--hhccc-CCcccccCCCCCCCCeeeecCC--CHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 166 EAIIVSCCGCFHGRTLA--AISMS-CDNEAIRGFGPLLPGHLKVDFG--DITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 166 ~~~ii~~~~~yhg~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~--d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
.+++ ...+|+.... +.... +.. ...++.+ ...+. .++ .++++|++..++||+|.+
T Consensus 122 --v~~v-~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~g~~~~~--~i~---~~~~~v~~~~~~nptG~~ 181 (398)
T 2fyf_A 122 --SLHL-TYGEFSAKFASAVSKNPFVGE------------PIIITSDPGSAPEP--QTD---PSVDVIAWAHNETSTGVA 181 (398)
T ss_dssp --EEEE-ECSHHHHHHHHHHHHCTTSCC------------CEEEECCTTCCCCC--CCC---TTCSEEEEESEETTTTEE
T ss_pred --eEEE-eCCHHHHHHHHHHHHhCCCCc------------eEEEecCCCCCCCc--ccc---CCCCEEEEeCcCCCccee
Confidence 2222 4444543221 11110 100 1112111 00000 122 367888866669999999
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCc-
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP- 317 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~- 317 (470)
.| +++|.++ ||+++|+||+|+.+... ...+ + +|++ +++|.++++- ++|++++++++++.++.
T Consensus 182 ~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~--~--~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~ 246 (398)
T 2fyf_A 182 VA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA--E--TDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAI 246 (398)
T ss_dssp CC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG--G--CSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHH
T ss_pred cc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc--c--CcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcc
Confidence 96 4444444 89999999999844322 1111 2 4665 5669998764 78999999998776521
Q ss_pred ---------CC----------ccCC-CCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 318 ---------GE----------HGST-FGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 318 ---------~~----------~~~t-~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
.. .+.+ ++.+..+++++.++++.+.+ +.+.++.+++++++.+.|+++ | .+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~-g~~ 321 (398)
T 2fyf_A 247 AATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----P-YTT 321 (398)
T ss_dssp HHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----T-TEE
T ss_pred cccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----C-Cce
Confidence 00 0223 34677777788888887654 346677777888888887764 1 233
Q ss_pred EEe--c--cce-eEEEEeccCCCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 374 EVR--G--RGL-FNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 374 ~~~--~--~g~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
... + .+. ++++.++.. .+..++++.|.++||.+.++. .+++|+++...+|++|+++++++|+++++ +
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~-~ 397 (398)
T 2fyf_A 322 PFVTDPGLRSQVVGTIDFVDD---VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE-R 397 (398)
T ss_dssp ESCCSGGGBCSSEEEEEECTT---SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH-T
T ss_pred eccCChhhcCCcEEEEECCCC---CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH-h
Confidence 221 2 344 677766432 367889999999999997652 57899998888899999999999999987 5
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=182.03 Aligned_cols=315 Identities=14% Similarity=0.093 Sum_probs=187.1
Q ss_pred CCHHHHHHHHHHHHH-ccccC--CCCC--CCcHHHHH----HHHhhhhCCCe-----EEecCChhHHHHHHHHHHHHhch
Q 012138 92 CHPKIMKALQEQAEK-LTLSS--RAFY--NDKFPVFA----ERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGY 157 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~~--~~~~--~~~~~~l~----~~l~~~~~~~~-----v~~~~sGteA~~~al~~~~~~~~ 157 (470)
.+|+|++++...+.+ +..++ ..++ .+...+++ +++++++|.+. .++++||++||..++..+..
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--- 142 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--- 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC---
Confidence 579999999887643 32221 1111 12223444 88999998765 46677999999999987754
Q ss_pred hcccCCCCCcEEEEEccCccc-----cccc--hhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEE
Q 012138 158 VKKKFSIDEAIIVSCCGCFHG-----RTLA--AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 158 ~~~~~~~g~~~ii~~~~~yhg-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
+|+ .|++.++.|.| .... .+.+++.. +.....+..++...+ |+++|++++.++ ++++|++
T Consensus 143 ------pGD-~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-~~~~~~~vd~~~~~i---D~d~le~~l~~~--~~klIi~ 209 (490)
T 2a7v_A 143 ------PHD-RIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIA 209 (490)
T ss_dssp ------SCE-ECCC--------------------------------CCBCTTTCSB---CHHHHHHHHHHH--CCSEEEE
T ss_pred ------CCC-EecccCccccccccchhhhcchhHHHcCCe-EEEEecccccccCCc---CHHHHHHHHhhc--CCcEEEE
Confidence 566 67776666422 2111 11122210 100000111111223 899999999754 5677777
Q ss_pred ccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCcc-ccccCCCCccee--eccccccCCCcceeEEE
Q 012138 231 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML-ASDWEEVRPDMV--ILGKALGGGVIPVSAVL 306 (470)
Q Consensus 231 epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~-~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~ 306 (470)
....+| .+.+ +++|.++|++||++|++|++|. |+...|... .++ + .|++ +++|+++| . +.|+++
T Consensus 210 ~~s~~~--~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~--aDiv~~S~hK~l~G-p-~GG~i~ 277 (490)
T 2a7v_A 210 GTSAYA--RLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--H--ADIVTTTTHKTLRG-A-RSGLIF 277 (490)
T ss_dssp CCSSCC--SCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--T--CSEEEEESSGGGCS-C-SCEEEE
T ss_pred cCCCCC--Cccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--C--CCEEEECCcccCcc-c-cchhee
Confidence 553443 4555 9999999999999999999987 543333221 111 2 3655 67799964 3 678888
Q ss_pred ecHH---------------HHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhh
Q 012138 307 ADKE---------------VMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ 367 (470)
Q Consensus 307 ~~~~---------------~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~ 367 (470)
++++ +.+.++......+.+ .++..+++..++++.+.. +++.+++.+++++|.+.|.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-- 355 (490)
T 2a7v_A 278 YRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-- 355 (490)
T ss_dssp EECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred eccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 8764 333443222222333 455555565556665533 4577788889999999998742
Q ss_pred CCCceEEEe-c-cceeEEEEeccCCCchhHHHHHHHHHHcCceecc----C-----CCCEEEEecC----CCCCHHHHHH
Q 012138 368 FPNYVKEVR-G-RGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T-----HDTIVRLTPP----LSISSNELQE 432 (470)
Q Consensus 368 ~p~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~----~-----~~~~iR~~~~----~~~t~e~i~~ 432 (470)
+..+. + ...++++.+... +.+..++.+.|.+.||.+.. + .+..+||..+ ..++++|+++
T Consensus 356 ----~~v~~~~t~t~lv~vdl~~~--g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~ 429 (490)
T 2a7v_A 356 ----YSLVSGGTDNHLVLVDLRPK--GLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp ----CEEGGGSCSSSEEEEECTTT--TCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred ----cEEecCCCCCeEEEEEeCCC--CCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHH
Confidence 22222 1 224555544332 23677888999999999862 2 2578999654 3578999999
Q ss_pred HHHHHHHHHh
Q 012138 433 GSKALHDVLE 442 (470)
Q Consensus 433 ~~~~l~~~l~ 442 (470)
+++.|.+++.
T Consensus 430 ~~~~i~~~l~ 439 (490)
T 2a7v_A 430 VVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=178.04 Aligned_cols=307 Identities=14% Similarity=0.071 Sum_probs=184.6
Q ss_pred cHHHHHHHHhhhhCCC----eEEecCChhHHHHHHHHHHHHhch---hcccCCCC-CcEEEEEccCccccccchhcccCC
Q 012138 118 KFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGY---VKKKFSID-EAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~----~v~~~~sGteA~~~al~~~~~~~~---~~~~~~~g-~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
+..++.+++++++|.+ .++|++||++|+..++.+++.... +++|.+.. +..|++.... |.+...+....+.
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~-H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS-HYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCc-hHHHHHHHHHcCC
Confidence 3456777888888765 689999999999999998875210 12222111 2245555554 6555554444332
Q ss_pred cccccCCCCCCCCeeeecCC-----CHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 190 NEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
... .+..++.+ |+++|+++|++. +..+++|+++..+|++|.+.| +++|.++|++||+++
T Consensus 215 g~~---------~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~l 281 (511)
T 3vp6_A 215 GTD---------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWL 281 (511)
T ss_dssp CGG---------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEE
T ss_pred CCC---------cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEE
Confidence 100 01223322 899999999763 123788888777999999988 999999999999999
Q ss_pred EEeccccCCcccCCccccccCCC-Cccee--eccccccCCCcceeEEEecH-HHHhhcCc----CCc--c----------
Q 012138 262 IADEIQSGLARSGRMLASDWEEV-RPDMV--ILGKALGGGVIPVSAVLADK-EVMLCIQP----GEH--G---------- 321 (470)
Q Consensus 262 I~Dev~~g~g~~G~~~~~~~~~~-~pdi~--s~sK~l~gG~~~ig~v~~~~-~~~~~~~~----~~~--~---------- 321 (470)
++|++|++.......+.....++ ..|++ +..|.+++++ .+|+++.++ ++...... ... .
T Consensus 282 hvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~ 360 (511)
T 3vp6_A 282 HVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTG 360 (511)
T ss_dssp EEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCG
T ss_pred EEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCc-CeEEEEEeCHHHHHHHhccCCccccCcccccccccCcc
Confidence 99999985322221111111222 24665 4559888765 778887654 34433211 000 0
Q ss_pred -CCC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe---ccceeEEEEeccCCC--
Q 012138 322 -STF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTAL-- 391 (470)
Q Consensus 322 -~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~---~~g~~~~~~~~~~~~-- 391 (470)
.+. .+.+..+..+.++++.+.. +++.++..++.+++.+.|+++ | .+..+. +...++.|.+.....
T Consensus 361 ~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----p-g~~l~~~~~p~~~~v~f~~~p~~~~~ 435 (511)
T 3vp6_A 361 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----E-EFEMVFNGEPEHTNVCFWYIPQSLRG 435 (511)
T ss_dssp GGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----T-TEEESSSSCCSSSCEEEEECCGGGSS
T ss_pred CCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEEecCCCCeEEEEEEEeCccccc
Confidence 000 0111223333444554433 456677777788888777653 2 333332 445555554422110
Q ss_pred -----------chhHHHHHHHHHHcCceecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccc
Q 012138 392 -----------PVSAYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 392 -----------~~~~~~~~~~l~~~Gv~~~~-----~~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.....++.+.|.++|+++.. ++.+++|+++ ...+++++|+.+++.|++.-+ .+
T Consensus 436 ~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~-~~ 505 (511)
T 3vp6_A 436 VPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL 505 (511)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence 01134688999999865432 2235799998 678899999999999998876 54
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-18 Score=174.48 Aligned_cols=306 Identities=12% Similarity=0.023 Sum_probs=180.9
Q ss_pred cHHHHHHHHhhhhCCC-----------eEEecCChhHHHHHHHHHHHHhchhcccCCCC--------Cc-EEEEEccCcc
Q 012138 118 KFPVFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVKKKFSID--------EA-IIVSCCGCFH 177 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~-----------~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g--------~~-~ii~~~~~yh 177 (470)
+..++.+++++++|.+ .+++|+|||+|+..++..++.....+.+.+.| ++ .|++..+. |
T Consensus 114 le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~-h 192 (486)
T 1js3_A 114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA-H 192 (486)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC-C
T ss_pred HHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCC-c
Confidence 3445667788888765 37999999999999998876421110000002 13 35556666 4
Q ss_pred ccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---CCeEEEEEccccCCCccccCChhhHHHHHHHH
Q 012138 178 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254 (470)
Q Consensus 178 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~ 254 (470)
.+...+....+-.... .+.. +...+ |+++|+++|++.. ..+.+|++...+|++|.+.| +++|.++|
T Consensus 193 ~s~~~~~~~~G~~v~~---v~~d-~~~~~---d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----l~~I~~la 261 (486)
T 1js3_A 193 SSVERAGLIGGVKLKA---IPSD-GKFAM---RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPIC 261 (486)
T ss_dssp HHHHHHHHHHTCEEEE---ECCC-TTSCC---CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred HHHHHHHHhCCCceEE---eecC-CCCCC---CHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----HHHHHHHH
Confidence 4443333333321111 1110 01122 8999999997621 11236665555899999988 99999999
Q ss_pred HhcCcEEEEeccccCCcccCCccccccCCC-Ccceee--ccccccCCCcceeEEEecHH--HHhhcCc---CCcc--C--
Q 012138 255 SKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVI--LGKALGGGVIPVSAVLADKE--VMLCIQP---GEHG--S-- 322 (470)
Q Consensus 255 ~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s--~sK~l~gG~~~ig~v~~~~~--~~~~~~~---~~~~--~-- 322 (470)
++||+++++|++|+++......+.....++ ..|.++ .+|.++.++ ++|+++++++ +.+.+.. ...+ .
T Consensus 262 ~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 340 (486)
T 1js3_A 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (486)
T ss_dssp HHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC------------C
T ss_pred HHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence 999999999999986432211111101122 236654 469888776 9999998644 2444421 0000 0
Q ss_pred -----------CC--CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEE
Q 012138 323 -----------TF--GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVE 385 (470)
Q Consensus 323 -----------t~--~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~ 385 (470)
.. ....+.+. ++++.+.. +++.++..++++++.+.|+++ | .+..+ .+.+.++.|.
T Consensus 341 ~~~~~~~~~~~~~~rr~~~~~~~---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-~~~~~~~~~~~~v~f~ 412 (486)
T 1js3_A 341 GLITDYRHWQLPLGRRFRSLKMW---FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----P-RFEVCAEVTLGLVCFR 412 (486)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----T-TEEECSCCCSSEEEEE
T ss_pred cCCCCccccCCCCCCchhHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEeCCCceeEEEEE
Confidence 00 12233333 34443332 445666677777887777663 2 23332 2456667776
Q ss_pred eccCCCchhHHHHHHHHHHcCceec-cC---CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 386 FDKTALPVSAYDICLKMKERGILAK-PT---HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~-~~---~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
+.... ....++.+.|.++|+++. ++ +.+++|+++ ....|+++|++++++|+++++ ++.+
T Consensus 413 ~~~~~--~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~-~~~~ 476 (486)
T 1js3_A 413 LKGSD--GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA-ELLA 476 (486)
T ss_dssp ESSCH--HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHC
T ss_pred ecChH--HHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 64211 135789999998986543 22 357899995 445789999999999999988 7644
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=170.26 Aligned_cols=302 Identities=12% Similarity=0.042 Sum_probs=183.5
Q ss_pred CcHHHHHHHHhhhhCCC------------eEEecCChhHHHHHHHHHHHHhchhcc----------cCCCCCcEEEEEcc
Q 012138 117 DKFPVFAERLTSMFGYD------------MVLPMNTGAEGVETALKLARKWGYVKK----------KFSIDEAIIVSCCG 174 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~------------~v~~~~sGteA~~~al~~~~~~~~~~~----------~~~~g~~~ii~~~~ 174 (470)
++..++.+++++++|.+ ..++|+|||+||..++.+++.....+. +.. .+.+|++...
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~~ 196 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLN-ARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH-TTEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCccccccccc-CCeEEEEcCc
Confidence 34556667778887754 568999999999999998876422110 000 1224555555
Q ss_pred CccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHhcC---CCeEEEEEccccCCCccccCChhh
Q 012138 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 175 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~~~---~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
+ |.+...+..+.+... ..+|.+ |+++|+++|++.. ..+.+|++....+++|.+.|
T Consensus 197 ~-H~s~~~~~~~~g~~~------------~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---- 259 (481)
T 4e1o_A 197 A-HSSVEKAGLISLVKM------------KFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---- 259 (481)
T ss_dssp S-CHHHHHHHHHHTCEE------------EEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred c-hHHHHHHHHhCCCce------------EEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----
Confidence 5 666555544443221 222221 8999999997631 12666776666889999998
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH-HH-hhcCcC---
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE-VM-LCIQPG--- 318 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~-~~-~~~~~~--- 318 (470)
+++|.++|++||+++++|++|++.......+.....++ ..|.+++ .|.++..+ .+|+++.++. .. +.+...
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-DCTGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESBHHHHHTTTCCCCGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-ceEEEEEeCHHHHHHHhcCCchh
Confidence 99999999999999999999986422222111111233 2376655 58888765 7777776543 32 222110
Q ss_pred C-c---cC-------CC-CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeE
Q 012138 319 E-H---GS-------TF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFN 382 (470)
Q Consensus 319 ~-~---~~-------t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~ 382 (470)
. . +. +. .+.........++++.+.. +++.++..++++++.+.|+++ | .+... .+...++
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-g~~~~~~~~~~~v 413 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----P-SFEIPAKRHLGLV 413 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----T-TEECCSCCCSSEE
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEecCCceeEE
Confidence 0 0 00 00 0111122233334444333 456667777888888877664 1 23222 2344556
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCce-ecc---CCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGIL-AKP---THDTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~-~~~---~~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+.+.... ....++.++|.++|++ +.+ .+..++|+++. ..+|+++|++++++|+++++ ++
T Consensus 414 ~f~~~~~~--~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~l 478 (481)
T 4e1o_A 414 VFRLKGPN--SLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT-LI 478 (481)
T ss_dssp EEEESSCH--HHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred EEEeCCch--HHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 66554321 3567899999999854 443 23568999965 34589999999999999987 65
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=168.63 Aligned_cols=306 Identities=12% Similarity=-0.002 Sum_probs=184.0
Q ss_pred cHHHHHHHHhhhhCCC-----------eEEecCChhHHHHHHHHHHHHhchhcc--cCCC-------CCcEEEEEccCcc
Q 012138 118 KFPVFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVKK--KFSI-------DEAIIVSCCGCFH 177 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~-----------~v~~~~sGteA~~~al~~~~~~~~~~~--~~~~-------g~~~ii~~~~~yh 177 (470)
+..++.+++++++|.+ ..+||+|||+||..++.+++.....+. +.+. .+.+|++...+ |
T Consensus 114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~-H 192 (475)
T 3k40_A 114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA-H 192 (475)
T ss_dssp HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS-C
T ss_pred HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc-h
Confidence 3455667778888765 589999999999999998876421110 0000 12245555555 6
Q ss_pred ccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHH
Q 012138 178 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254 (470)
Q Consensus 178 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~ 254 (470)
-+...+..+.+..... .+...+ . + |+++|+++|++. +..+.+|++....+++|.+.| +++|.++|
T Consensus 193 ~s~~~~~~~~g~~~~~---v~~d~~-~-~---d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la 260 (475)
T 3k40_A 193 SSVERAGLLGGVKLRS---VQSENH-R-M---RGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVG 260 (475)
T ss_dssp HHHHHHHHHHTCEEEE---ECCBTT-B-C---CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred HHHHHHHHHcCCceEE---EECCCC-C-c---CHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHH
Confidence 6655554444322111 111111 1 3 899999999763 122566776666889999998 99999999
Q ss_pred HhcCcEEEEeccccCCcccCCccccccCCC-Ccceeec--cccccCCCcceeEEEecHH-HH-hhcCc---CC-c---cC
Q 012138 255 SKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE-VM-LCIQP---GE-H---GS 322 (470)
Q Consensus 255 ~~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~--sK~l~gG~~~ig~v~~~~~-~~-~~~~~---~~-~---~~ 322 (470)
++||+++++|++|++.......+.....++ ..|.+++ .|.+++.+ .+|+++.++. .. +.+.. +. . +.
T Consensus 261 ~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 339 (475)
T 3k40_A 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS 339 (475)
T ss_dssp HHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESSGGGC------------------
T ss_pred HHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-ceEEEEEeCHHHHHHHhcCCccccCCCcCCC
Confidence 999999999999985322221111111232 2476655 58888776 7888886643 21 22210 00 0 00
Q ss_pred -----CC---CCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCC
Q 012138 323 -----TF---GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTA 390 (470)
Q Consensus 323 -----t~---~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~ 390 (470)
.+ .+-+.......++++.+.. +++.++..++++++.+.|+++ | .+... .+...++.+.+....
T Consensus 340 ~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~-g~~l~~~~~~~iv~f~~~~~~ 414 (475)
T 3k40_A 340 APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----S-RFELAAEINMGLVCFRLKGSN 414 (475)
T ss_dssp ---------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----T-TEEESSCCBTTEEEEEESSCH
T ss_pred CCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----C-CEEEecCCceEEEEEEeCCch
Confidence 00 1111223334445554443 456677778888888888774 1 23322 234455666554321
Q ss_pred CchhHHHHHHHHHHcCcee-cc---CCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 391 LPVSAYDICLKMKERGILA-KP---THDTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 391 ~~~~~~~~~~~l~~~Gv~~-~~---~~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
....++.++|.++|.+. .+ .+..++|+++. ..+|+++|++++++|+++++ ++
T Consensus 415 --~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~~ 471 (475)
T 3k40_A 415 --ERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD-EM 471 (475)
T ss_dssp --HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred --HHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 35678999999997654 32 24578999965 34689999999999999988 65
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-18 Score=168.20 Aligned_cols=279 Identities=10% Similarity=0.084 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHH---ccccCC-CCCCCcHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQAEK---LTLSSR-AFYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~~~~---~~~~~~-~~~~~~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
+++|++++.+.... +..... .|....+.+|++.+++++|.+..++ ++||++|+..++..+.+ +|
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~---------~G 101 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILR---------PD 101 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCC---------TT
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcC---------CC
Confidence 45677776664311 111111 2223346789999999999988777 89999999999987654 46
Q ss_pred CcEEEEEc-cCccccccchhcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcc----ccC
Q 012138 166 EAIIVSCC-GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQG 235 (470)
Q Consensus 166 ~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~ep----i~n 235 (470)
+ .|++.. +.|.+... .+...+.. ...+.........++. .|+++|++++++ ++++|++++ ++|
T Consensus 102 D-~Vl~~~~~~y~~~~~-~~~~~g~~--~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 102 D-ELLYITGQPYDTLEE-IVGIRKQG--QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGYADR 174 (409)
T ss_dssp C-EEEECSSSCCTTHHH-HHTSSSSS--SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred C-EEEEeCCCCcHhHHH-HHhcccch--hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCCCCC
Confidence 5 677776 67654321 11000000 0000000001122222 389999999875 799999998 899
Q ss_pred CCccccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCC-cceeEEEecHH
Q 012138 236 EAGVIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLADKE 310 (470)
Q Consensus 236 ~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~~~~ 310 (470)
|+|.+.+ +++|.++|++ ||+++|+||+|+.+....... ..+ .|++ |++|.++|+. ...|+++++++
T Consensus 175 ptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 175 PSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGT--CSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred CcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccC--CeEEEECccccCCccCCceEEEEEeCHH
Confidence 9999987 9999999999 999999999998432111111 123 3655 8899998642 14688999999
Q ss_pred HHhhcCcCC----ccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-----e
Q 012138 311 VMLCIQPGE----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----F 381 (470)
Q Consensus 311 ~~~~~~~~~----~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-----~ 381 (470)
+++.+.... .+...+..+..+.++...++.+ +...++..+++.++.+.|++++.+ ..++... +
T Consensus 246 li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~------v~p~~~~~~~~~i 317 (409)
T 3jzl_A 246 LVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVE------ADPVWDAPRTDLI 317 (409)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE------EESCTTSCCSSSC
T ss_pred HHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCc------ccCCCCCCCccEE
Confidence 988875421 1122222222233343334332 446677777888888888875321 1222222 7
Q ss_pred EEEEeccCCCchhHHHHHHHHHHcCc
Q 012138 382 NAVEFDKTALPVSAYDICLKMKERGI 407 (470)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv 407 (470)
+.+.+... ....++++.|++...
T Consensus 318 ~~i~l~~~---~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 318 QSVSFHNK---EKMVAFAQAIQAASP 340 (409)
T ss_dssp CEEECSCH---HHHHHHHHHHHHTSS
T ss_pred EEEEeCCH---HHHHHHHHHHHhcCc
Confidence 77777533 477889999998853
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.1e-18 Score=169.99 Aligned_cols=280 Identities=14% Similarity=0.153 Sum_probs=168.6
Q ss_pred CcHHHHHHHHhhhhCCCe--EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc----ccCCc
Q 012138 117 DKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS----MSCDN 190 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~--v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~----~~~~~ 190 (470)
+...++++++++++|.+. +++++|++.++++++.+++. . +++ .|++..+.| ......+. ..+-.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~-----~gd-~Viv~~~~h-~s~~~~~~~~a~~~G~~ 177 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---T-----GRM-GVLVSQGVH-PEYRAVLRAYLEAVGAK 177 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---H-----TCC-EEEEETTSC-HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---C-----CCC-EEEEcCccC-HhHHHHHHHHHHHCCCE
Confidence 346788999999998764 57889999555555443321 0 344 777777775 33332221 11211
Q ss_pred ccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecc-ccC
Q 012138 191 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI-QSG 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev-~~g 269 (470)
... .+. .+ ..+ |+++ +++ ++++|+++.+ |++|.+.| +++|.++|++||+++|+|.. ++
T Consensus 178 v~~---v~~-~~-~~~---d~~~----i~~---~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a- 236 (438)
T 1wyu_A 178 LLT---LPL-EG-GRT---PLPE----VGE---EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS- 236 (438)
T ss_dssp EEE---ECC-BT-TBC---CCCC----CCT---TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred EEE---EcC-cC-Ccc---CHHH----hCC---CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence 110 010 00 011 3333 333 7899987776 99999998 99999999999999996632 32
Q ss_pred CcccCCccccccCCCCcceeecc-cccc-----CCCcceeEEEecHHHHhhcCcCCc-----------------------
Q 012138 270 LARSGRMLASDWEEVRPDMVILG-KALG-----GGVIPVSAVLADKEVMLCIQPGEH----------------------- 320 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~s-K~l~-----gG~~~ig~v~~~~~~~~~~~~~~~----------------------- 320 (470)
+|.... ...+ .+|++++| |.++ +|. ++|++++++++++.+.....
T Consensus 237 ~g~~~~---~~~~--g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 310 (438)
T 1wyu_A 237 LGVLKP---PGAY--GADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI 310 (438)
T ss_dssp GGTBCC---HHHH--TCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred ccCcCC---CccC--CCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence 221111 1112 34777664 6543 566 89999999988877632110
Q ss_pred ---cCCCCC---CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC
Q 012138 321 ---GSTFGG---NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 391 (470)
Q Consensus 321 ---~~t~~~---~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~ 391 (470)
..++.. +.+...++...+..+.+ +++.++.+++++++.+.|+++ | .+....+...+..+.+..+.
T Consensus 311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~-g~~~~~~~~~~~~~~~~~~~- 384 (438)
T 1wyu_A 311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----P-GVRPFTPKPFFNEFALALPK- 384 (438)
T ss_dssp HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T-TCEECSCSSBCSEEEEECSS-
T ss_pred chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEECCCCCeEEEEEEeCCC-
Confidence 122221 22322222223444433 345666777777777777654 1 23322222333333333222
Q ss_pred chhHHHHHHHHHHcCcee--ccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 392 PVSAYDICLKMKERGILA--KPTH---DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 392 ~~~~~~~~~~l~~~Gv~~--~~~~---~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+..+++++|.++||.+ .++. ++++|+++...+|++++++++++|++++
T Consensus 385 --~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 385 --DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp --CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 5788999999999998 4442 7899999988899999999999998865
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=176.10 Aligned_cols=304 Identities=10% Similarity=-0.008 Sum_probs=185.3
Q ss_pred CcHHHHHHHHhhhhCCCeEE-ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch-hcccCCccccc
Q 012138 117 DKFPVFAERLTSMFGYDMVL-PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEAIR 194 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~-~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~ 194 (470)
....++++.+++++|.+..+ +++|+++|+.+++..+.. +|+ .||+..++| .+...+ +.+++......
T Consensus 173 ~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~---------pGD-~VLv~~~~H-~S~~~~~~~l~Ga~~v~v 241 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS---------NGD-LVLFDRNNH-KSVYNSALAMAGGRPVYL 241 (730)
T ss_dssp THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEETTCC-HHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcC---------CCC-EEEEcCCch-HHHHHHHHHHCCCEEEEE
Confidence 45789999999999988754 555556999999887754 455 788888874 333333 33333211100
Q ss_pred CCCCCCCC-eeeecCCCHHHH-----HHHHHhcCCC---e----EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEE
Q 012138 195 GFGPLLPG-HLKVDFGDITAL-----EKIFKESGDQ---I----AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM 261 (470)
Q Consensus 195 ~~~~~~~~-~~~~~~~d~~~L-----e~~l~~~~~~---~----~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gill 261 (470)
....-.-+ ...+ |+++| +++++++..+ + ++++++.. |++|.+.| +++|.++|++||++|
T Consensus 242 ~~~~~~~~i~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d----l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 242 QTNRNPYGFIGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN----AHEVVKRIGHLCDYI 313 (730)
T ss_dssp CEEECTTCCEEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC----HHHHHHHHGGGBSEE
T ss_pred eCCccccCccCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC----HHHHHHHHHHcCCeE
Confidence 00000000 0112 66666 8888753100 3 66664432 58999998 999999999999999
Q ss_pred EEeccccC---CcccCC---ccccccCCCC-cc-ee--eccccccCCCcceeEEEecHHHH---------hhcCcC-Ccc
Q 012138 262 IADEIQSG---LARSGR---MLASDWEEVR-PD-MV--ILGKALGGGVIPVSAVLADKEVM---------LCIQPG-EHG 321 (470)
Q Consensus 262 I~Dev~~g---~g~~G~---~~~~~~~~~~-pd-i~--s~sK~l~gG~~~ig~v~~~~~~~---------~~~~~~-~~~ 321 (470)
|+||+|++ |+..++ ....+.++.+ ++ ++ |++|+++|-- ..|+++.+++.+ ..+... ...
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~-~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~ 392 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLF 392 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC-CEEEEEecchhhcCcccccCHHHHHHHHHHh
Confidence 99999973 322111 1112223432 11 33 7789876421 234554443322 111100 112
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH-HHhhCCCceEEEec--------------------
Q 012138 322 STFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFK-IQQQFPNYVKEVRG-------------------- 377 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~-l~~~~p~~~~~~~~-------------------- 377 (470)
.+.+.+...+++..++++.+.. .++.++..++.+++++.|++ +. .+....+
T Consensus 393 ~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~-----g~~v~~p~~~~~~~~~~~~~~~~~~~~ 467 (730)
T 1c4k_A 393 MSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS-----MFRPFVPPVVNGKKWEDGDTEDMANNI 467 (730)
T ss_dssp SCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC-----SSEESSCSEETTEEGGGSCHHHHTTCG
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCC-----CeEEccccccccccccccccccccccc
Confidence 2344677777777777776654 45677788888888888876 21 1111000
Q ss_pred ------------------cce-e-----EEEEecc--------CCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCC
Q 012138 378 ------------------RGL-F-----NAVEFDK--------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI 425 (470)
Q Consensus 378 ------------------~g~-~-----~~~~~~~--------~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~ 425 (470)
.+. + +.+..+. ...+.++..+.+.|+++||.+...+...+|++++..+
T Consensus 468 ~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~ 547 (730)
T 1c4k_A 468 DYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAE 547 (730)
T ss_dssp GGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTC
T ss_pred hhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCC
Confidence 111 1 2332210 1113468899999999999998777889999999999
Q ss_pred CHHHHHHHHHHHHHHHhcccC
Q 012138 426 SSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 426 t~e~i~~~~~~l~~~l~~~~~ 446 (470)
|+++++.++++|.++.+ ++.
T Consensus 548 t~e~i~~Ll~aL~~i~~-~~~ 567 (730)
T 1c4k_A 548 TPAKMNNLITQLLQLQR-LIE 567 (730)
T ss_dssp CHHHHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-hcc
Confidence 99999999999999987 663
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=164.20 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHH---ccccC-CCCCCCcHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCC
Q 012138 93 HPKIMKALQEQAEK---LTLSS-RAFYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSID 165 (470)
Q Consensus 93 ~p~v~~a~~~~~~~---~~~~~-~~~~~~~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g 165 (470)
+++|.+++.+.... +.... ..|...-..++++.+++++|.+..++ ++||++|+..++..+.+ +|
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~---------pG 116 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLR---------PN 116 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCC---------TT
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcC---------CC
Confidence 36677766654321 11111 11222336889999999999988777 89999999999887654 56
Q ss_pred CcEEEEEc-cCcccccc----------chhcccCCcccccCCCCCCCCeeeecC----CCHHHHHHHHHhcCCCeEEEEE
Q 012138 166 EAIIVSCC-GCFHGRTL----------AAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLF 230 (470)
Q Consensus 166 ~~~ii~~~-~~yhg~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~Le~~l~~~~~~~~~vi~ 230 (470)
| .|++.+ +.|++... ..+...+. ....++. .|+++|+++++++ +++++|++
T Consensus 117 D-~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~------------~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i 182 (427)
T 3hvy_A 117 D-TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV------------KYKMVDLKDGKVDINTVKEELKKD-DSIKLIHI 182 (427)
T ss_dssp C-EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC------------EEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEE
T ss_pred C-EEEEeCCCCchhHHHHhccccchhhhHHHHcCC------------EEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEE
Confidence 6 777777 77765431 11111111 1123333 3899999999841 27999999
Q ss_pred cc----ccCCCccccCChhhHHHHHHHHHh--cCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCC-cc
Q 012138 231 EP----IQGEAGVIIPPDGYLKAVRDLCSK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IP 301 (470)
Q Consensus 231 ep----i~n~~G~~~~~~~~l~~l~~l~~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ 301 (470)
++ ++||+|.+.+ +++|.++|++ ||+++|+|++|+.+....... ..+. |++ |++|.++|+. ..
T Consensus 183 ~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~ga--Div~~S~sK~lgg~g~~~ 253 (427)
T 3hvy_A 183 QRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVGA--DIIAGSLIKNIGGGIATT 253 (427)
T ss_dssp ESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGTC--SEEEEETTSGGGTTTCCS
T ss_pred ECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccCC--eEEEECCcccccccccce
Confidence 88 8999998887 9999999999 899999999997442122111 1233 554 8899998642 25
Q ss_pred eeEEEecHHHHhhcCcCCc----cCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 302 VSAVLADKEVMLCIQPGEH----GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~----~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
.|++++++++++.++.... +.+.+.++..+..+...++.+ +...++..+++.++.+.|++++. ...++
T Consensus 254 GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~------~V~p~ 325 (427)
T 3hvy_A 254 GGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAGF------DVLPK 325 (427)
T ss_dssp CEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTC------EEESC
T ss_pred EEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCC------eecCC
Confidence 6889999999988764211 111122122233333333332 44667777788888888877532 11222
Q ss_pred cce-----eEEEEeccCCCchhHHHHHHHHHHcC
Q 012138 378 RGL-----FNAVEFDKTALPVSAYDICLKMKERG 406 (470)
Q Consensus 378 ~g~-----~~~~~~~~~~~~~~~~~~~~~l~~~G 406 (470)
... ++.+.+... ....++++.|....
T Consensus 326 ~~~~~~~li~~~~l~~~---~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 326 YNDKRTDIIQAIKFNDE---KKLIDFIKGIQTAS 356 (427)
T ss_dssp TTSCCSSSEEEEECSSH---HHHHHHHHHHHHTC
T ss_pred CCCCCceEEEEEeCCCH---HHHHHHHHHhcccc
Confidence 333 777766533 36778999988763
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=164.13 Aligned_cols=246 Identities=13% Similarity=0.128 Sum_probs=162.5
Q ss_pred cHHHHHHHHhhhhCCCeEEe---cCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc-cCccccccc----------h
Q 012138 118 KFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLA----------A 183 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~~v~~---~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~-~~yhg~~~~----------~ 183 (470)
.+.++++.+++++|.+..++ ++||++|+..++..+.+ +|+ .|++.. +.|++.... .
T Consensus 74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~---------pGD-~Vl~~~~~~y~~~~~~~g~~~~~~~~~ 143 (427)
T 3i16_A 74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLR---------PGN-TMLSVCGEPYDTLHDVIGITENSNMGS 143 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCC---------TTC-EEEESSSSCCGGGHHHHTCSCCCSSCC
T ss_pred HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhC---------CCC-EEEEeCCCccHHHHHHHhccccchHHH
Confidence 46889999999999888777 89999999999887654 565 777777 776544311 1
Q ss_pred hcccCCcccccCCCCCCCCeeeecC-----CCHHHHHHHHHhcCCCeEEEEEcc----ccCCCccccCChhhHHHHHHHH
Q 012138 184 ISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLC 254 (470)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Le~~l~~~~~~~~~vi~ep----i~n~~G~~~~~~~~l~~l~~l~ 254 (470)
+...+ . ....++. .|+++|+++++++ +++++|++++ ++||+|.+.+ +++|.++|
T Consensus 144 l~~~G---~---------~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la 206 (427)
T 3i16_A 144 LKEFG---I---------NYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIED----IKSIVDCV 206 (427)
T ss_dssp TGGGT---C---------EEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHH
T ss_pred HHHcC---C---------EEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHH
Confidence 11111 0 1122222 3899999999831 2799999988 8999999887 99999999
Q ss_pred Hh--cCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCC-cceeEEEecHHHHhhcCcCCccCCCC--CC
Q 012138 255 SK--YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLADKEVMLCIQPGEHGSTFG--GN 327 (470)
Q Consensus 255 ~~--~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~-~~ig~v~~~~~~~~~~~~~~~~~t~~--~~ 327 (470)
++ ||+++|+||+|+.+....... ..+. |++ |++|.++|+. .+.|++++++++++.++.......++ ..
T Consensus 207 ~~~~~g~~livD~a~~~~~~~~~p~---~~ga--Div~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~ 281 (427)
T 3i16_A 207 KNIRKDIICFVDNCYGEFMDTKEPT---DVGA--DLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECG 281 (427)
T ss_dssp HHHCTTSEEEEECTTTTTSSSSCGG---GGTC--SEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCC
T ss_pred HHhCCCCEEEEECCCccccccCCcc---ccCC--eEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCC
Confidence 99 999999999998442222111 1233 554 8899998642 26789999999998876421111111 11
Q ss_pred H-HH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-----eEEEEeccCCCchhHHHHHH
Q 012138 328 P-LA-SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----FNAVEFDKTALPVSAYDICL 400 (470)
Q Consensus 328 ~-~~-~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~ 400 (470)
+ +. +..+...++.+ +...++..+++.++.+.|++++. ...++... ++.+.+... ....+|++
T Consensus 282 ~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~------~V~p~~~~~~~~~i~~i~l~~~---~~~~~f~~ 350 (427)
T 3i16_A 282 STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGF------EVMPKYDEKRSDIIQSIKFNDK---DKLIEFCK 350 (427)
T ss_dssp CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTC------EEESCTTSCCSSSCEEEECSSH---HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC------eecCCCCCCCccEEEEEEECCH---HHHHHHHH
Confidence 1 22 33333333322 45667777788888888877532 22223333 777777643 36788999
Q ss_pred HHHHcC
Q 012138 401 KMKERG 406 (470)
Q Consensus 401 ~l~~~G 406 (470)
.|....
T Consensus 351 ~l~~~~ 356 (427)
T 3i16_A 351 GIQTGS 356 (427)
T ss_dssp HHHHTC
T ss_pred HHhhcC
Confidence 998874
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=170.33 Aligned_cols=305 Identities=13% Similarity=0.054 Sum_probs=187.0
Q ss_pred HHHHHHHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 119 FPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
..++++.+++++|.+.. +++||+++|+.+++..+.. +|+ .|++..++| .+...++...+..... .
T Consensus 207 v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~---------~GD-~Vlv~~~~h-~s~~~~~~~~G~~~v~---v 272 (755)
T 2vyc_A 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMT---------DND-VVVVDRNCH-KSIEQGLMLTGAKPVY---M 272 (755)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEESSCC-HHHHHHHHHHCCEEEE---E
T ss_pred HHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcC---------CCC-EEEECCCch-HHHHHHHHHcCCEEEE---E
Confidence 45677788888887764 5566667899999987754 455 788888885 3333333333321110 1
Q ss_pred CCCCCeeee--cCC----CHHHHHHHHHhcCC-------CeEEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 198 PLLPGHLKV--DFG----DITALEKIFKESGD-------QIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 198 ~~~~~~~~~--~~~----d~~~Le~~l~~~~~-------~~~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
+...+...+ +.. |+++|++++++++. ++++++ ++| |++|.+.+ +++|.++|++||++||+
T Consensus 273 ~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~liv 346 (755)
T 2vyc_A 273 VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHF 346 (755)
T ss_dssp CCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEE
T ss_pred eCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEE
Confidence 100000000 000 79999999976321 123555 554 68999998 99999999999999999
Q ss_pred eccccCC-cccCCcccccc-CC--CC---cc---eeeccccccCCCcceeEEEecHH--HH--hhcCc-CCccCCCCCCH
Q 012138 264 DEIQSGL-ARSGRMLASDW-EE--VR---PD---MVILGKALGGGVIPVSAVLADKE--VM--LCIQP-GEHGSTFGGNP 328 (470)
Q Consensus 264 Dev~~g~-g~~G~~~~~~~-~~--~~---pd---i~s~sK~l~gG~~~ig~v~~~~~--~~--~~~~~-~~~~~t~~~~~ 328 (470)
||+|++. .....+-.... .+ .+ +. +.|++|+++|-- ..|+++++++ .. ..+.. .....+.+++.
T Consensus 347 DeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~-~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~ 425 (755)
T 2vyc_A 347 DEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS-QASYIHVREGRGAINFSRFNQAYMMHATTSPLY 425 (755)
T ss_dssp ECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCT-TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCH
T ss_pred ECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcC-CeeeeeecCcccccCHHHHHHHHHHhCCCCHHH
Confidence 9999842 22111000111 22 11 11 237889877432 3566666543 11 11111 01222345778
Q ss_pred HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC---CC-ceE-----EEec-------------------
Q 012138 329 LASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF---PN-YVK-----EVRG------------------- 377 (470)
Q Consensus 329 ~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~---p~-~~~-----~~~~------------------- 377 (470)
+.+++..++++.+.. +++.++..++.+++++.|+++...+ .. ++. .+.+
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTT 505 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccc
Confidence 888888888887765 3578888999999999998875410 00 011 1100
Q ss_pred --------------------cc------eeEEEEecc-CC------CchhHHHHHHHHHHcCceeccCCCCEEEEecCCC
Q 012138 378 --------------------RG------LFNAVEFDK-TA------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLS 424 (470)
Q Consensus 378 --------------------~g------~~~~~~~~~-~~------~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~ 424 (470)
.| ..+.+.+.. .. .+.++..+.+.|.++||.+...+.+.+|++++..
T Consensus 506 ~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g 585 (755)
T 2vyc_A 506 VQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMG 585 (755)
T ss_dssp CGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTT
T ss_pred hhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCC
Confidence 11 122332321 00 1245688999999999998766789999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccc
Q 012138 425 ISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 425 ~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.|++++++++++|.++.+ ..
T Consensus 586 ~t~~~~~~l~~al~~~~~-~~ 605 (755)
T 2vyc_A 586 VTRGKWGTLVNTLCSFKR-HY 605 (755)
T ss_dssp CCTTTTHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHH-hh
Confidence 999999999999999887 55
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=160.21 Aligned_cols=315 Identities=10% Similarity=-0.000 Sum_probs=191.1
Q ss_pred CCCCHHHHHHHHHHHHHccccCCCC---C------CCcHHHHHHHHhhhhCCC---eEEe-cCChhHHHHHHHHHHHHhc
Q 012138 90 GHCHPKIMKALQEQAEKLTLSSRAF---Y------NDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWG 156 (470)
Q Consensus 90 G~~~p~v~~a~~~~~~~~~~~~~~~---~------~~~~~~l~~~l~~~~~~~---~v~~-~~sGteA~~~al~~~~~~~ 156 (470)
+..+++|.+++.+.+..+...+.+. . .+..++.++.++++++.+ +|+| ++|||+++++++..+...
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~- 100 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL- 100 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG-
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC-
Confidence 4478999999998876433221111 1 123456677888888753 5788 589999999999866531
Q ss_pred hhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCC
Q 012138 157 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGE 236 (470)
Q Consensus 157 ~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~ 236 (470)
. +|+ .++....+.++.... ......+....+.+...+ ... ++++++..+++ ++++|.+....+.
T Consensus 101 --~----~Gd-~v~~~~~g~~~~~~~--~~a~~~G~~~~~~~~~~~-~~~---~~~~~~~~i~~---~t~lV~~~h~et~ 164 (377)
T 3e77_A 101 --K----AGR-CADYVVTGAWSAKAA--EEAKKFGTINIVHPKLGS-YTK---IPDPSTWNLNP---DASYVYYCANETV 164 (377)
T ss_dssp --S----TTC-EEEECCCSHHHHHHH--HHHTTTSEEEECSCCCSS-SCS---CCCGGGCCCCT---TCSCEEEESEETT
T ss_pred --C----CCC-eEEEEECCHHHHHHH--HHHHHhCCceEEeccCCC-cCC---CCChHHhccCC---CccEEEEeCccCc
Confidence 0 245 444433333333211 111111111111111100 011 34445444433 7788877665677
Q ss_pred CccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcC
Q 012138 237 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 316 (470)
Q Consensus 237 ~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~ 316 (470)
+|.+.| + +|+++|+++++|.+|+ +| ...+..+.+++ ...+--|.+| .. .+|+++.++++.+.+.
T Consensus 165 tG~~~p----i-----i~~~~~~~~~vD~~q~-~g--~~~id~~~~~~--~~~s~~K~~g-p~-G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 165 HGVEFD----F-----IPDVKGAVLVCDMSSN-FL--SKPVDVSKFGV--IFAGAQKNVG-SA-GVTVVIVRDDLLGFAL 228 (377)
T ss_dssp TTEECS----S-----CCCCTTCCEEEECTTT-TT--SSCCCGGGCSE--EEEEGGGTTS-CT-TCEEEEEETTSCSCCC
T ss_pred hheEch----h-----hhccCCCEEEEEcccc-cC--CCCCchhhcCE--EEEecccccC-CC-ccEEEEEcHHHHhhcc
Confidence 899997 4 5889999999999998 22 12233444442 2334448884 44 7888999888765543
Q ss_pred cC-----------CccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceE-EE---e
Q 012138 317 PG-----------EHGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVK-EV---R 376 (470)
Q Consensus 317 ~~-----------~~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~-~~---~ 376 (470)
+. ....++ +++.....+..++|+++.+ +.+.++.+++.+++++.|+++. .+. .. .
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~-----g~~~~~~~~~ 303 (377)
T 3e77_A 229 RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ-----GFYVCPVEPQ 303 (377)
T ss_dssp TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-----TSEECCSCGG
T ss_pred CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC-----CceecCCCHH
Confidence 21 112233 4677778888889998765 3466777778888888877642 121 11 1
Q ss_pred cc-ceeEEEEeccCCCchh-HHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 377 GR-GLFNAVEFDKTALPVS-AYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 377 ~~-g~~~~~~~~~~~~~~~-~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+ +..+.+.++.-....+ ...+.+.|.++||.+.++. .+.+|+++...+|+|||+.+++.|+++++
T Consensus 304 ~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~ 373 (377)
T 3e77_A 304 NRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLE 373 (377)
T ss_dssp GBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 12 3346666654210011 2467788888999987763 35799999999999999999999999987
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=163.46 Aligned_cols=308 Identities=9% Similarity=-0.009 Sum_probs=184.1
Q ss_pred CCHHHHHHHHHHHHHccccCCC---------CCCCcHHHHHHHHhhhhCCC---eEEe-cCChhHHHHHHHHHHHHhchh
Q 012138 92 CHPKIMKALQEQAEKLTLSSRA---------FYNDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYV 158 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~---~v~~-~~sGteA~~~al~~~~~~~~~ 158 (470)
.+|+|++++.+.+......+.+ -.....++.++.++++++.+ +|+| |+|||+++++++..+..
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~---- 113 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLG---- 113 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCT----
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccC----
Confidence 5799999998776542211110 12345677888899988753 5788 69999999999986643
Q ss_pred cccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCC
Q 012138 159 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGE 236 (470)
Q Consensus 159 ~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~ 236 (470)
++++.+++..+. ++.... ......+ ...+.+.. .....+ ++++++.++++ ++++|++....+.
T Consensus 114 -----~gd~v~~~~~~~-~~~~~~--~~a~~~G-~v~~v~~~~~~~G~~~---~~~~~~~~l~~---~t~lV~~~h~et~ 178 (386)
T 3qm2_A 114 -----DKTTADYVDAGY-WAASAI--KEAKKYC-APQIIDAKITVDGKRA---VKPMREWQLSD---NAAYLHYCPNETI 178 (386)
T ss_dssp -----TCCEEEEEESSH-HHHHHH--HHHTTTS-EEEEEECEEEETTEEE---ECCGGGCCCCT---TCSCEEECSEETT
T ss_pred -----CCCeEEEEeCCH-HHHHHH--HHHHHhC-CeEEEecCcccCCCCC---CchHHHhhcCC---CCcEEEEECCcCC
Confidence 466444444443 332211 1111100 01011110 001111 45566665554 7888887776777
Q ss_pred Cccc-cCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhc
Q 012138 237 AGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 315 (470)
Q Consensus 237 ~G~~-~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~ 315 (470)
+|.+ .| +++|. +|+++++|.+|+ +| ...+..+.+++ +..+--|.+| .. .+|++++++++.+.+
T Consensus 179 tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g--~~pidv~~~~~--~~~s~hK~lG-P~-G~g~l~v~~~~~~~~ 242 (386)
T 3qm2_A 179 DGIAIDE----TPDFG-----PEVVVTADFSST-IL--SAPLDVSRYGV--IYAGAQKNIG-PA-GLTLVIVREDLLGKA 242 (386)
T ss_dssp TTEECCC----CCCCC-----TTCCEEEECTTT-TT--SSCCCGGGCSE--EEEETTTTTC-CT-TEEEEEEEGGGCSCC
T ss_pred cCEecCc----hhhhc-----CCCEEEEEcccc-cC--CCCCCccccCE--EEEecccccC-CC-ccEEEEECHHHHhhh
Confidence 8996 65 55543 799999999998 22 11233444442 4445559884 44 789999998886544
Q ss_pred CcCC-----------ccCCC-CCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEE---Ee
Q 012138 316 QPGE-----------HGSTF-GGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE---VR 376 (470)
Q Consensus 316 ~~~~-----------~~~t~-~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~---~~ 376 (470)
.+.. .+..+ +.|..++++..++++++.+ +.+.++.+++.+++++.|+++. ++.. ..
T Consensus 243 ~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-----~~~~~~~~~ 317 (386)
T 3qm2_A 243 HESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-----FYRNDVAQA 317 (386)
T ss_dssp CTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-----SEECCBCGG
T ss_pred cccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-----CcccCCCHH
Confidence 4210 11122 4566677777788887655 3466677778888888887652 2111 11
Q ss_pred cc-ceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 377 GR-GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 377 ~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+ ...+.+.++... .+ ..+...|.++||.+..+. .+.+|+++...+|+|||+++++.|+++.+
T Consensus 318 ~rs~~iv~f~~~~~~--~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 318 NRSRMNVPFQLADNT--LD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp GBCSSEEEEEESSGG--GH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCceEEEEECCCcc--cc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 12 245666665322 24 677888999999987663 25699999999999999999999999887
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=152.03 Aligned_cols=312 Identities=11% Similarity=0.046 Sum_probs=190.2
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC----C-----CCcHHHHHHHHhhhhCC--C-eEEe-cCChh
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF----Y-----NDKFPVFAERLTSMFGY--D-MVLP-MNTGA 142 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~----~-----~~~~~~l~~~l~~~~~~--~-~v~~-~~sGt 142 (470)
+++.|..+... .+|+|.+++.+.+..+...+.+. + ....++.++.++++++. + +|+| |+|||
T Consensus 5 ~~~~f~pgpt~-----~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T 79 (361)
T 3m5u_A 5 RKINFSAGPST-----LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGAS 79 (361)
T ss_dssp CCEECCSSSCC-----CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceEeecCCCCC-----CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHH
Confidence 44556666443 56999999998775432211110 1 13345667788888875 2 6777 99999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc--hhcccCCcccccCCCCCCCCe-eeecCCCHHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNEAIRGFGPLLPGH-LKVDFGDITALEKIFK 219 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~Le~~l~ 219 (470)
+++++++..+. ++++..++..+.| +.... +...+.. ..+.+...+. ..+ ++++ + |+
T Consensus 80 ~a~n~~~~~~~----------~~~~~~~i~~~~~-~~~~~~~a~~~G~~----v~~~~~~~~g~~~~---~~~~-~--l~ 138 (361)
T 3m5u_A 80 LQFAMIPMNLA----------LNGVCEYANTGVW-TKKAIKEAQILGVN----VKTVASSEESNFDH---IPRV-E--FS 138 (361)
T ss_dssp HHHHHHHHHHC----------CSSCEEEEECSHH-HHHHHHHHHHTTCC----EEEEEECTTTTSCS---CCCC-C--CC
T ss_pred HHHHHHHHhcC----------CCCeEEEEeCCHH-HHHHHHHHHHcCCc----eEEEecccCcCCCc---CChh-h--cC
Confidence 99999998653 2443433344333 22111 1111110 0000100000 000 2333 2 44
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGG 297 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~g 297 (470)
+ ++++|.+....+.+|.+.|. +++ +|+++++|.+|+ +|. ..+..+ + .|++++| |.+|
T Consensus 139 ~---~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~--~~id~~--~--~d~~~~s~~K~~g- 197 (361)
T 3m5u_A 139 D---NADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFS--RKVDFS--N--IALFYGGVQKNAG- 197 (361)
T ss_dssp T---TSSEEEEESEETTTTEECSS---------CCC-CSSCEEEECGGG-TTS--SCCCCT--T--EEEEEEETTTTSS-
T ss_pred C---CCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCC--CCCCcc--c--CCEEEEechhccC-
Confidence 3 67777776556677999751 444 499999999998 221 112222 2 4777666 8884
Q ss_pred CCcceeEEEecHHHHhhcCc----CC--------ccCC-CCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQP----GE--------HGST-FGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQH 360 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~----~~--------~~~t-~~~~~~~~aaa~a~l~~~~~~----~~~~~~~~~~~~l~~~ 360 (470)
.. .+|+++.++++.+.+.+ .. ...+ .+.|..++.++.++++++.+. .+.++.+++.+++++.
T Consensus 198 p~-G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~ 276 (361)
T 3m5u_A 198 IS-GLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYEC 276 (361)
T ss_dssp CT-TCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CC-ccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 44 78999999988766533 10 1223 346777888888899987653 4667777788888888
Q ss_pred HHHHHhhCCCceEEE-e--c-cceeEEEEecc-CCCchhHHHHHHHHHHcCceeccCC--CCEEEEecCCCCCHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEV-R--G-RGLFNAVEFDK-TALPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEG 433 (470)
Q Consensus 361 L~~l~~~~p~~~~~~-~--~-~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~~~~~~--~~~iR~~~~~~~t~e~i~~~ 433 (470)
|+++.. ++... . . ...++.+.++. .. .+ .++...|.++||.+.++. .+.+|+++...+|++||+++
T Consensus 277 L~~~~g----~~~~~~~~~~rs~~ivsf~~~~~~~--~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l 349 (361)
T 3m5u_A 277 IDLSNG----FYKGHADKKDRSLMNVSFNIAKNKD--LE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTL 349 (361)
T ss_dssp HHTSTT----SEEESSCGGGBCSSEEEEEESSCTT--HH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHH
T ss_pred HHHCCC----eeeccCCHHHcCCeEEEEECCCchh--hh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHH
Confidence 876531 11111 1 1 13456666653 22 23 478889999999987763 25699999999999999999
Q ss_pred HHHHHHHHh
Q 012138 434 SKALHDVLE 442 (470)
Q Consensus 434 ~~~l~~~l~ 442 (470)
++.|+++.+
T Consensus 350 ~~al~~~~~ 358 (361)
T 3m5u_A 350 CEFMKEFQG 358 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999887
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.8e-15 Score=156.57 Aligned_cols=302 Identities=11% Similarity=0.024 Sum_probs=192.8
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCCh-hHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sG-teA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
.....++++.+++++|.++.+++++| +.||.+++.++.. +|+ .|++..++ |.+...++.+++......
T Consensus 194 ~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~---------pGD-~VLv~r~~-H~S~~~~l~lsGa~pv~v 262 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAP---------AGS-TILIDRNC-HKSLTHLMMMSDVTPIYF 262 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEESSC-CHHHHHHHHHSCCEEEEE
T ss_pred cHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCC---------CCC-EEEECCCc-cHHHHHHHHHcCCEEEEE
Confidence 34477899999999999987776666 6899888887754 455 78888887 555555555554321111
Q ss_pred CCCCCCCCeeeecCC------CHHHHHHHHHhcCCCeE---EEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 195 GFGPLLPGHLKVDFG------DITALEKIFKESGDQIA---GFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~------d~~~Le~~l~~~~~~~~---~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
+...+...+.++ |+++|++++++++ +++ +++ ++| |++|.+.+ +++|.++|++++ ||+|
T Consensus 263 ---~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~-~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 263 ---RPTRNAYGILGGIPQSEFQHATIAKRVKETP-NATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp ---CCCBCTTCCBCCCCGGGGSHHHHHHHHHHST-TCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred ---eccccccccccCcccccCCHHHHHHHHhhCc-CccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 000011112222 7999999998753 222 455 555 89999998 999999998774 7999
Q ss_pred ccccC-C--cccCCc-cccccCCCCcce-----eeccccccCCCcceeEEEecHHHH-hhcCc-CCccCCCCCCHHHHHH
Q 012138 265 EIQSG-L--ARSGRM-LASDWEEVRPDM-----VILGKALGGGVIPVSAVLADKEVM-LCIQP-GEHGSTFGGNPLASAV 333 (470)
Q Consensus 265 ev~~g-~--g~~G~~-~~~~~~~~~pdi-----~s~sK~l~gG~~~ig~v~~~~~~~-~~~~~-~~~~~t~~~~~~~~aa 333 (470)
|+|++ + +..++. .+.. .+..+|+ .|++|++++-- ..|++.++.++. +.+.. .....+.+.+++.+++
T Consensus 331 EAH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~glt-qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~As 408 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFS-QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVAS 408 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSCCT-TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred cccccccccCCccccccccc-cCcCCCEEEEEEecccccccCCC-CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHH
Confidence 99983 3 221111 1111 1212464 47889987521 345666654321 11111 1223345688999999
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCc-eEEEec------------------------cce-----
Q 012138 334 AIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRG------------------------RGL----- 380 (470)
Q Consensus 334 a~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~-~~~~~~------------------------~g~----- 380 (470)
..++++.++. +++++++.++..++++.|+++....+++ +..... .+.
T Consensus 409 ldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp 488 (715)
T 3n75_A 409 TETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP 488 (715)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC
Confidence 9999988863 5688999999999999999886421110 010000 000
Q ss_pred -eEEEEecc-C--C----CchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 381 -FNAVEFDK-T--A----LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 381 -~~~~~~~~-~--~----~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
=+.+.... + . .+..+..+.+.|+++||.+--.+.+.+-+.++...|++++++++++|.++-+
T Consensus 489 ~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 489 IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp TEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01111111 0 0 1346778999999999998877788888888889999999999999988765
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-14 Score=136.25 Aligned_cols=295 Identities=13% Similarity=0.057 Sum_probs=181.9
Q ss_pred CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-ccccCCCCCCCCeeeecCCCH
Q 012138 133 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFGDI 211 (470)
Q Consensus 133 ~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 211 (470)
...+++|++|.++.+++.++.+.. . ++.+.||....+ |-+...++.+.+-. .+-.+. ...+...+ |+
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~-----r-pg~d~VIvpRn~-HKSv~kAliL~Gl~Pv~V~p~--~d~~~~~i---d~ 202 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHK-----R-PKAKYIIWPRID-QKSCFKSMITAGFEPVVIENV--LEGDELRT---DL 202 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHH-----C-TTCCEEEEECCC-CHHHHHHHHHTTCEEEEECEE--EETTEEEE---CH
T ss_pred CcEEEECcHHHHHHHHHHHHcCcc-----c-CCCCEEEEecch-HHHHHHHHHHcCCeEEEEeee--ecccccCC---CH
Confidence 358888999988877777665521 0 233467666655 99888888776642 221110 00112344 89
Q ss_pred HHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc---cccccCCCCcc
Q 012138 212 TALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM---LASDWEEVRPD 287 (470)
Q Consensus 212 ~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~---~~~~~~~~~pd 287 (470)
++||++|++++ +.+.+|+.++.++..+.+.+ +++|.++|++||+++++||+|...-..... .+++ +| ..|
T Consensus 203 e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~-~G-rAD 276 (501)
T 3hl2_A 203 KAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGAR-VG-RID 276 (501)
T ss_dssp HHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHH-HS-CCC
T ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHh-cC-CCc
Confidence 99999999875 46667777764554556676 999999999999999999999853211111 1112 23 358
Q ss_pred eeecc--ccccCCCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHH
Q 012138 288 MVILG--KALGGGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 288 i~s~s--K~l~gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L 361 (470)
+++.| |.+--.+ +.+.++ -++++++.+..... ++.+++|. +..+.++..+.. .++.++..++.++|++.|
T Consensus 277 ~vVqS~HK~llvpI-GG~ii~~~d~e~l~~~~~~yP-Gr~S~Sps--ldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L 352 (501)
T 3hl2_A 277 AFVQSLDKNFMVPV-GGAIIAGFNDSFIQEISKMYP-GRASASPS--LDVLITLLSLGSNGYKKLLKERKEMFSYLSNQI 352 (501)
T ss_dssp EEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHHTSC-SCBCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccceeec-CceEEEeCCHHHHHHHHHhCC-CCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666 6543211 212232 35666666543221 22223332 223333333333 567788888999999999
Q ss_pred HHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHHHHcCce---e-ccCC--------------------CC
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGIL---A-KPTH--------------------DT 415 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~---~-~~~~--------------------~~ 415 (470)
+++...++..+-..+....-+++.+..... +.....+-..|..++|. + .++. ..
T Consensus 353 ~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~ 432 (501)
T 3hl2_A 353 KKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCA 432 (501)
T ss_dssp HHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSC
T ss_pred HHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCch
Confidence 998876653333334445555565543211 22466788888888764 2 2221 46
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCCC
Q 012138 416 IVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 450 (470)
Q Consensus 416 ~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~ 450 (470)
++-.+....++++||+.++++|++++. ++++...
T Consensus 433 yl~~a~aiG~~~~~v~~~~~~l~~~~~-~~~~~~~ 466 (501)
T 3hl2_A 433 YLNAASAIGMKMQDVDLFIKRLDRCLK-AVRKERS 466 (501)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHH-HHHC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHhhc
Confidence 788888889999999999999999998 7765444
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=135.76 Aligned_cols=307 Identities=12% Similarity=0.058 Sum_probs=177.6
Q ss_pred HHHHHHHHhhhhCCCe---EEecCChh-HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc
Q 012138 119 FPVFAERLTSMFGYDM---VLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~---v~~~~sGt-eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 194 (470)
...+..++.+.+|... .++++++| .++.+++.+++... +++ +.||+... -|.+...++.+.+-.....
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~------~~~-~~viv~r~-aHkSv~kAl~l~Gl~p~~v 171 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR------PKA-KYIIWPRI-DQKSCFKSMVTAGFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC------TTC-CEEEEECC-CCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhh------cCC-CEEEEECC-cHHHHHHHHHHcCCeeEEE
Confidence 3566777777777543 58899998 55555555655421 013 35666665 4999888887766422211
Q ss_pred CCCCCCCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 195 GFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
.-.+ ..+...+ |+++|+++|++++ +.+.+|+..|.++..|.+.| +++|.++|++||+++++|++|.+..+.
T Consensus 172 ~~~~-~~~~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~ 243 (450)
T 3bc8_A 172 ENVL-EGDELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSK 243 (450)
T ss_dssp CCEE-ETTEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred Eeee-cCccCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhh
Confidence 0000 0112333 8999999998865 45677778776665678887 999999999999999999999863221
Q ss_pred CCccccccCCC-Ccceeecc--ccccCCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhH
Q 012138 274 GRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKL 346 (470)
Q Consensus 274 G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~ 346 (470)
...+..+.+.. ..|.+++| |.+...+ ..+++.. +++..+.+.....+ ..+.+| +.. .+.++..+.. .++
T Consensus 244 ~~~l~~~a~~~~~AD~~v~S~HK~l~a~~-~~~~l~~rd~~~~~~~~~~~~g-~~s~Sp-sL~-l~~~l~~~G~~g~~~~ 319 (450)
T 3bc8_A 244 CMHLIQQGARVGRIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPG-RASASP-SLD-VLITLLSLGCSGYRKL 319 (450)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCS-CBCSHH-HHH-HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHhcccCCCEEEECCccCCCchh-ccEEEEecCHHHHHHHHHHhhc-CCcccH-HHH-HHHHHHHHHHHHHHHH
Confidence 11110011111 34777665 7776544 5556665 55555555332211 111233 222 2222222222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccC--CCchhHHHHHHHHHHcCc---eec-----------
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT--ALPVSAYDICLKMKERGI---LAK----------- 410 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv---~~~----------- 410 (470)
.++..++.+++++.|+++...+.-.+......+.-..+.+..- ....+..++.-.+...|+ -+.
T Consensus 320 i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~ 399 (450)
T 3bc8_A 320 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGH 399 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHH
Confidence 4445777888999998887554311211111111122222210 001255666666666552 222
Q ss_pred ----------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 411 ----------PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 411 ----------~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
.....++-+..++..+++++++++++|++++. +.+
T Consensus 400 ~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~-~~~ 444 (450)
T 3bc8_A 400 TFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN-IVR 444 (450)
T ss_dssp EEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 22367788888899999999999999999987 654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-12 Score=121.74 Aligned_cols=282 Identities=15% Similarity=0.103 Sum_probs=165.7
Q ss_pred HHhhhhCCCeE-----EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccc--------hhcccCCcc
Q 012138 125 RLTSMFGYDMV-----LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--------AISMSCDNE 191 (470)
Q Consensus 125 ~l~~~~~~~~v-----~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~--------~~~~~~~~~ 191 (470)
+..++++.+.. +=..||+.||.+++.++.+ ||| .|+.++.. ||..+. .+..++. .
T Consensus 108 rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~---------PGD-~ilg~~l~-~GGHltHg~~~~~~~v~~sg~-~ 175 (490)
T 3ou5_A 108 RALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ---------PHD-RIMGLDLP-DGGHLTHGYMSDVKRISATSI-F 175 (490)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC----------CC-CEECBC--------------------------
T ss_pred HHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC---------CCC-EEEecccC-CCCcccccccCCCcccccccc-c
Confidence 44566787653 4456999999999988876 677 67776655 333221 1112221 0
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~ 270 (470)
+....-++.++...+ |.+.+++...++ ++++||+-. +..-...| +++++++|++.|++|++|-+|. |+
T Consensus 176 ~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~--kPklIi~G~--SaY~r~id----~~~~reIAd~vGA~Lm~DmAHiaGL 244 (490)
T 3ou5_A 176 FESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIAGT--SAYARLID----YARMREVCDEVKAHLLADMAHISGL 244 (490)
T ss_dssp ----CBCEETTTTEE---CHHHHHHHHHHH--CCSEEEECC--SSCCSCCC----HHHHHHHHHHHTCEEEEECGGGHHH
T ss_pred ccccccccCCCCCcc---cHHHHHHHHhhc--CCCeEEECC--ccCccccC----HHHHHHHHhhcccEEEechhhhhhh
Confidence 100000111222334 899999999887 778888754 22234455 9999999999999999999998 66
Q ss_pred cccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH---------------HHhhcCcCCccCCCCCCHH-HHH
Q 012138 271 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPGEHGSTFGGNPL-ASA 332 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~---------------~~~~~~~~~~~~t~~~~~~-~~a 332 (470)
.-.|.+- +.+.. .|++|.+ |+|.|. |-|.|+++++ +.+.+...-..+..+++-+ .+|
T Consensus 245 VA~g~~p--sP~~~-ADvVTtTTHKTLrGP--rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IA 319 (490)
T 3ou5_A 245 VAAKVIP--SPFKH-ADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIA 319 (490)
T ss_dssp HHTTSSC--CGGGT-CSEEEEESSSTTCSC--SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHH
T ss_pred hcccccC--Ccccc-ceEEeccccccccCC--CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHH
Confidence 4444332 11222 4888655 888865 7777887652 3333322112222333323 333
Q ss_pred HHHHHHHH-Hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHcCc
Q 012138 333 VAIASLDV-IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKERGI 407 (470)
Q Consensus 333 aa~a~l~~-~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 407 (470)
+-..++.. +.. ..+.+++.++++.|.+.|.+.+ +..+.+ ...++++.+... +.+..+..+.|.+.||
T Consensus 320 AkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G------~~vvsGgTdnHlvLvDl~~~--g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 320 AVAVALKQACTPMFREYSLQVLKNARAMADALLERG------YSLVSGGTDNHLVLVDLRPK--GLDGARAERVLELVSI 391 (490)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECGGG--TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC------CeeecCCCCceEEEEecccc--CCCHHHHHHHHHHcCc
Confidence 32233443 332 4577778888888888887743 333322 234556655432 2366777778888899
Q ss_pred eec----cC-----CCCEEEEecCC----CCCHHHHHHHHHHHHHHHh
Q 012138 408 LAK----PT-----HDTIVRLTPPL----SISSNELQEGSKALHDVLE 442 (470)
Q Consensus 408 ~~~----~~-----~~~~iR~~~~~----~~t~e~i~~~~~~l~~~l~ 442 (470)
.+. |. ...-|||..|. .+.++|++++.+.|.+++.
T Consensus 392 tvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 392 TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 875 33 24579997653 4778999999999988775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 470 | ||||
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 1e-127 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 1e-125 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 1e-107 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 5e-90 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 2e-79 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 1e-73 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 3e-67 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 6e-67 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 2e-27 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-26 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 1e-19 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 4e-14 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 1e-09 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 3e-09 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 4e-07 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 6e-06 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 374 bits (961), Expect = e-127
Identities = 208/404 (51%), Positives = 277/404 (68%), Gaps = 6/404 (1%)
Query: 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIM 97
+S + EY+Y AHN HP+P+ + KG +WD EG KY DFLS+ SAVNQGHCHPKI+
Sbjct: 4 TSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 63
Query: 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 157
AL+ Q +KLTL+SRAFYN+ + E +T +F Y VLPMNTG E ETA KLARKWGY
Sbjct: 64 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 123
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 217
K +A IV G F GRTL+AIS S D + GFGP +PG + + D+ ALE+
Sbjct: 124 TVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERA 183
Query: 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
++ +A F+ EPIQGEAGV++P GYL VR+LC+++ +L IADEIQ+GLAR+GR L
Sbjct: 184 LQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 241
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 337
A D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEH ST+GGNPL VAIA+
Sbjct: 242 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAA 301
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397
L+V+ +E LAE + LG LR L K+ + V VRG+GL NA+ +T A+
Sbjct: 302 LEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAWK 357
Query: 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
+CL++++ G+LAKPTH I+R PPL I +EL+E + ++ +
Sbjct: 358 VCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 401
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 367 bits (944), Expect = e-125
Identities = 190/405 (46%), Positives = 266/405 (65%), Gaps = 5/405 (1%)
Query: 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIM 97
+ + IN E +Y AHNY P+P+V +AKG ++D +Y DFLSAYS+VNQGHCHP I+
Sbjct: 2 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNIL 61
Query: 98 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 157
A+ QA+ LT+ SRAF++ + LT++ GYD VL MNTGAE ETA KL RKWGY
Sbjct: 62 NAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGY 121
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 217
KK + A IV C F GRTL IS S + FGP P KV + D+ ALE+
Sbjct: 122 EVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEE 181
Query: 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
K + F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++L
Sbjct: 182 LK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 239
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 337
V+PD+++LGKAL GG P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ + +
Sbjct: 240 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEA 299
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397
L+V+ +EKL E + LG ++L + + V++VRG+GL A+EF V+ D
Sbjct: 300 LNVLINEKLCENAEKLGGPFLENLKRELKDSKI-VRDVRGKGLLCAIEFKNE--LVNVLD 356
Query: 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
ICLK+KE G++ + HD +RLTPPL I+ +L E ++ + ++
Sbjct: 357 ICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVK 401
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 321 bits (824), Expect = e-107
Identities = 124/404 (30%), Positives = 206/404 (50%), Gaps = 21/404 (5%)
Query: 40 QQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKA 99
+ L+ E + Y+ ++ + +G+ +WD EGN+Y+D + Y N GH +P++++A
Sbjct: 2 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 61
Query: 100 LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMN--TGAEGVETALKLARKWGY 157
++ QAE L + F LT++ ++ +G E E ALK AR
Sbjct: 62 VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG 121
Query: 158 VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 217
KK V+ F GRT+ ++S++ + + F PL+ + + D+ AL++
Sbjct: 122 RKK--------FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRA 173
Query: 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277
++ A + EP+QGE GV +L+A R++ + L+I DEIQ+G+ R+G+
Sbjct: 174 V---DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 230
Query: 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 337
A + + PD++ L KALGGG +P+ + +EV + G HG+TFGGNPLA A +A+
Sbjct: 231 AFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAA 289
Query: 338 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 397
+ + +L ER+A LG + L I ++EVRG GL +E + A P
Sbjct: 290 IRYLERTRLWERAAELGPWFMEKLRAIPS---PKIREVRGMGLMVGLELKEKAAP----Y 342
Query: 398 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441
I KE +LA T++R PPL I +L+ +A+ VL
Sbjct: 343 IARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 278 bits (712), Expect = 5e-90
Identities = 104/423 (24%), Positives = 192/423 (45%), Gaps = 19/423 (4%)
Query: 37 SSSQQLINLEYEYSAHNYH-PVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPK 95
+S+++L+ + PI +A+ +WD EG +YLDF + +N GH HPK
Sbjct: 1 NSNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPK 60
Query: 96 IMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKL 151
++ A++ Q +KL+ + + + E + L + TG+E VE A+K+
Sbjct: 61 VVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKI 120
Query: 152 ARKWGYVKKKFSIDEAIIVSCCGCFH-----GRTLAAISMSCDNEAIRGFGPLLPGHLKV 206
AR + A A + + + + L G +
Sbjct: 121 ARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISED 180
Query: 207 DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 266
D + + IA + EP+QGE G +++ +R LC ++ I++IADE+
Sbjct: 181 DAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEV 240
Query: 267 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 326
QSG R+G + A + V PD+ K++ GG P++ V EVM + PG G T+ G
Sbjct: 241 QSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAG 299
Query: 327 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 386
NP+A A+ L V E L +++ LG++L+ L I ++ P + +VRG G A+E
Sbjct: 300 NPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIEL 358
Query: 387 -----DKTALPVSAYDICLKMKERGIL--AKPTHDTIVRLTPPLSISSNELQEGSKALHD 439
+I + +++G++ + + ++R+ PL+I ++++G + +
Sbjct: 359 FEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 418
Query: 440 VLE 442
+
Sbjct: 419 CFD 421
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 251 bits (641), Expect = 2e-79
Identities = 106/412 (25%), Positives = 178/412 (43%), Gaps = 36/412 (8%)
Query: 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111
+ PIVF + K + WD +GN+Y+D++ + GH HP++++AL+ EK T S
Sbjct: 29 KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT--S 86
Query: 112 RAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV 170
V AE + +MV +N+G E L+L R + K I+
Sbjct: 87 FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK--------II 138
Query: 171 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESG 222
GC+HG + + A G P PG L + D+ A++ +F E+
Sbjct: 139 KFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENP 197
Query: 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 282
+IAG + EPI G +G I+P G+L+ +R++ +++ L++ DE+ +G R +
Sbjct: 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKF 256
Query: 283 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLD 339
V PD+ LGK +GGG +PV A +E+M + P T GNPLA I +L+
Sbjct: 257 GVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE 315
Query: 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD---------KTA 390
++R E + + L L I Q+ + + G+F + K +
Sbjct: 316 LLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKS 375
Query: 391 LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
M E+GI P+ L+ + ++ A V+
Sbjct: 376 DLQKFSRFHRGMLEQGIYLAPSQF--EAGFTSLAHTEEDIDATLAAARTVMS 425
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 236 bits (602), Expect = 1e-73
Identities = 104/428 (24%), Positives = 187/428 (43%), Gaps = 31/428 (7%)
Query: 39 SQQLINLEYEYSAHNY----HPVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCH 93
+ + + + H + P+P+ A+G + +G + +D +S++ A G+ H
Sbjct: 2 TTDDLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNH 61
Query: 94 PKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152
P++ A++ Q + ++ + +L +M + + V + +
Sbjct: 62 PQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMK 121
Query: 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG------------PLL 200
Y + K + + +HG T A+S+ + ++ P
Sbjct: 122 MALQYWQAKGEARQRFLT-FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQS 180
Query: 201 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAG-VIIPPDGYLKAVRDLCSKYNI 259
+ D D+ ++ +IA + EPI AG + + +LK +R +C + I
Sbjct: 181 RMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE 319
L+IADEI +G R+G++ A + E+ PD++ LGKAL GG + +SA L +EV I GE
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE 300
Query: 320 -----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374
HG TF GNPLA A A ASL ++ ++ A + +LR+ L + V +
Sbjct: 301 AGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD--AEMVAD 358
Query: 375 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434
VR G VE PV+ + E+G+ +P I L PP I +LQ +
Sbjct: 359 VRVLGAIGVVETTH---PVNMAALQKFFVEQGVWIRPFGKLI-YLMPPYIILPQQLQRLT 414
Query: 435 KALHDVLE 442
A++ ++
Sbjct: 415 AAVNRAVQ 422
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 220 bits (561), Expect = 3e-67
Identities = 88/463 (19%), Positives = 167/463 (36%), Gaps = 57/463 (12%)
Query: 28 PQGGTSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAV 87
P T S++L+ + +++G+ + D +GN+ LD S S++
Sbjct: 6 PLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSI 65
Query: 88 NQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFP-----VFAERL--TSMFGYDMVLPMNT 140
G+ HP ++K +Q+ T +R P E L + G ++ M
Sbjct: 66 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 125
Query: 141 GAEGVETALKLARKWGYVKKK------------------FSIDEAIIVSCCGCFHGRTLA 182
G+ E A K W K++ + I+S G FHGRT+
Sbjct: 126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG 185
Query: 183 AISMSCDNEAIRG---------------------FGPLLPGHLKVDFGDITALEKIFKES 221
++ + + F ++ L +++
Sbjct: 186 CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK 245
Query: 222 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLAS 279
+AG + EPIQ E G D + + +RD+ K+ + DE+Q+ G
Sbjct: 246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEH 305
Query: 280 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339
+ D++ K + G KE P +T+ G+P + + ++
Sbjct: 306 WGLDDPADVMTFSKKMMTGGFF------HKEEFRPNAPYRIFNTWLGDPSKNLLLAEVIN 359
Query: 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 399
+I+ E L +AH G+ L L +Q ++P ++ VRGRG F + + ++ +
Sbjct: 360 IIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI---RNKLI 416
Query: 400 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ +G++ D +R P L + D+L
Sbjct: 417 SIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA 459
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 218 bits (556), Expect = 6e-67
Identities = 112/406 (27%), Positives = 182/406 (44%), Gaps = 22/406 (5%)
Query: 58 PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117
P++ +AKGS ++D +G LDF S + GHCHP+I+ + E A KL +
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 118 KFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLAR----KWGYVKKKFSIDEAIIVS 171
A RL ++ G D L ++TGAE E A+++A+ K+ V S +
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD-----FGDITALEKIFKESGDQIA 226
+ + + AI P + A + I ++S +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 286
F+ EPI G+I PDGY+ A++ C +L+I DE Q+G+ R+G M A + V P
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 263
Query: 287 DMVILGKALGGGVIPVSAVLADKEVM-LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345
D++ L K LG G+ + V + +T +PL +AV + LDV++ +
Sbjct: 264 DILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG 323
Query: 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVSAYDICL 400
L R+ +G+ LR+ L + ++F + +VRGRGL VE K I
Sbjct: 324 LVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITR 382
Query: 401 KMKERG----ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
+ G I+ P + R+ PPL++S +E+ G L +E
Sbjct: 383 ECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 111 bits (279), Expect = 2e-27
Identities = 48/366 (13%), Positives = 102/366 (27%), Gaps = 23/366 (6%)
Query: 101 QEQAEKLTLSSRAFYNDK-FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 159
Q + AF + + AE + ++FGY +P + G + + + K +
Sbjct: 57 QSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116
Query: 160 KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIF 218
K + + S + + I+ D+ LE+
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176
Query: 219 KESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS------GLA 271
+E G + + + AG LKA+ + KY+I ++ D +
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ 236
Query: 272 RSGRMLASDWEEVRPDMVIL--------GKALGGGVIPVSAVLADKEVMLCIQPGEHGST 323
R E++ + K + + + D + +
Sbjct: 237 REAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV 296
Query: 324 FGGNPL---ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380
G P A+ L V + + Q+L ++ ++ G
Sbjct: 297 QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAA 356
Query: 381 FNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 440
F K + A + + V + L + + ++
Sbjct: 357 FVDAG--KLLPHIPADQFPAQALACELYKV-AGIRAVEIGSFLLGRDPKTGKQLPCPAEL 413
Query: 441 LELDLP 446
L L +P
Sbjct: 414 LRLTIP 419
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 109 bits (272), Expect = 2e-26
Identities = 64/417 (15%), Positives = 123/417 (29%), Gaps = 63/417 (15%)
Query: 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 131
P Y+D L+ M E + + ++ +F
Sbjct: 39 PSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYA---------GSRNYYDLKDKAKELFN 89
Query: 132 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191
YD ++P + G + K+ + K + + FH T AA +
Sbjct: 90 YDYIIPAHQGRGAENILFPVLLKYKQKEGK--AKNPVFI---SNFHFDTTAAHVELNGCK 144
Query: 192 AIRGFGPLLPGHLKVDFG----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD-GY 246
AI D DI L++ + G + + + P
Sbjct: 145 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 204
Query: 247 LKAVRDLCSKYNILMIADEIQS------GLARSGRMLASDWEEVRPDMVILGKALG---- 296
LK V ++ ++ I ++ D + AR + + +EV DM AL
Sbjct: 205 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 264
Query: 297 -GGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASAVAI-ASLDVIRDEKLA 347
++ + ++A ++ P E T+GG A+ L+ +E+
Sbjct: 265 KDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYL 324
Query: 348 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY----DICLKMK 403
+ L L ++ G +F + +P + I
Sbjct: 325 HYRIGQVKYLGDRL---REAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYL 381
Query: 404 ERGILA-----------------KPTHDTIVRLT-PPLSISSNELQEGSKALHDVLE 442
E G+ A K +RLT +++ + + AL + E
Sbjct: 382 ESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE 438
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 87.5 bits (215), Expect = 1e-19
Identities = 44/351 (12%), Positives = 104/351 (29%), Gaps = 24/351 (6%)
Query: 93 HPKIMKALQEQAEKLTLSSRAFYNDKF-PVFAERLTSMFGYDMVLPMNTGAEGVETALKL 151
++ KA+ + + + D FG + L + +G G + ++
Sbjct: 13 TEEMRKAMAQAE----VGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA 68
Query: 152 ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI 211
+ G + P+ + +D D+
Sbjct: 69 HTQRGDEVILEADSHIFWYEVGAMAVLSG-------------VMPHPVPGKNGAMDPDDV 115
Query: 212 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271
+ + + E +G + P +K + + ++ I + D + A
Sbjct: 116 RKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNA 175
Query: 272 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLAS 331
+ D V+ + G S V+ D++ + + GG +
Sbjct: 176 SIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARK--ARKMLGGGMRQA 233
Query: 332 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 391
V A+ + + + L + + ++V+ + L
Sbjct: 234 GVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVI----LRTDNL 289
Query: 392 PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
V+A+ ++ G+LA DT +RL +S N+++E +
Sbjct: 290 KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 71.0 bits (172), Expect = 4e-14
Identities = 39/363 (10%), Positives = 83/363 (22%), Gaps = 27/363 (7%)
Query: 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPV-FAERLTSMFGYDM- 134
L F S N P++ +AL + + + + D+ + +F D+
Sbjct: 4 ALGFSSD----NIAGASPEVAQALVKHSSG---QAGPYGTDELTAQVKRKFCEIFERDVE 56
Query: 135 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 194
V + TG L C
Sbjct: 57 VFLVPTGTAANALCLSAMTPPWGNI------------YCHPASHINNDECGAPEFFSNGA 104
Query: 195 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 254
+ K+D + + Q I ++A+ D+C
Sbjct: 105 KLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVC 164
Query: 255 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC 314
++ + D + A + + + L + + + L
Sbjct: 165 KSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLA 224
Query: 315 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 374
+ G A +D + L R+A Q L + +
Sbjct: 225 TEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVL 284
Query: 375 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 434
D + L G +VR + ++ ++
Sbjct: 285 GGTEANILFCRLDSAMIDA------LLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLL 338
Query: 435 KAL 437
+
Sbjct: 339 NQV 341
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 57.5 bits (138), Expect = 1e-09
Identities = 67/404 (16%), Positives = 137/404 (33%), Gaps = 59/404 (14%)
Query: 60 VFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN--- 116
+ + A+ + I +G+ ++F A + + + HP ++ A + + +
Sbjct: 30 IITSAQQADITVADGSHVINF-CANNYLGLAN-HPDLIAAAKAGMDSHGFGMASVRFICG 87
Query: 117 --DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG 174
D ++L + G + + ++ F + + + G
Sbjct: 88 TQDSHKELEQKLAAFLGMEDAILYSSC--------------------FDANGGLFETLLG 127
Query: 175 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQ 234
A++ + + +R + D ++ A K +E+G + + +
Sbjct: 128 AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVF 187
Query: 235 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR--SGRMLASDWE-EVRPDMVIL 291
GVI LK V DL KY+ L++ D+ + +GR + R D++
Sbjct: 188 SMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITG 243
Query: 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA 351
G A KEV+ ++ F N LA A+ AS+ V+
Sbjct: 244 TLGKALGGASGGYTAARKEVVEWLRQRSRPYLF-SNSLAPAIVAASIKVLEMV------- 295
Query: 352 HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD------ICLKMKER 405
G ELR L+ +QF +E F D +PV D ++++
Sbjct: 296 EAGSELRDRLWANARQF----REQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARELQKE 351
Query: 406 GILAK-------PTHDTIVRLTPPLSISSNELQEGSKALHDVLE 442
GI P +R + + ++ +A + +
Sbjct: 352 GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK 395
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 56.7 bits (136), Expect = 3e-09
Identities = 52/346 (15%), Positives = 104/346 (30%), Gaps = 48/346 (13%)
Query: 122 FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 181
+ + +FG+ ++P + G +LA K G +
Sbjct: 80 LEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYV----AGNMYFTTTRFHQEKNGA 135
Query: 182 AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241
+ + D L K D D+ L + KE G + ++ +
Sbjct: 136 TFVDIVRD----EAHDASLNLPFKGDI-DLNKLATLIKEKGAENIAYICLAVTVNLAGGQ 190
Query: 242 PPD-GYLKAVRDLCSKYNILMIADEIQSGLA-------------RSGRMLASDWEEVRPD 287
P ++AV ++ S Y I + D + S + + +
Sbjct: 191 PVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADG 250
Query: 288 MVILGKALGGG-----VIPVSAVLADKEVMLCIQPGEHGSTFGGN-PLASAVAIASLDVI 341
+ GK + + L + S G A+AI + +
Sbjct: 251 CTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM 310
Query: 342 RDEKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV---EFDKTAL---- 391
+ E + R +LG++LR+ I + + + R + +F +L
Sbjct: 311 QYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASI 370
Query: 392 ----PVSAYDICLKMKER----GILAKPTHDTIVRLTPPLSISSNE 429
V + + + R G +P + VRLT P + +
Sbjct: 371 YMETGVRSMERGIVSAGRSKETGENHRPKLE-TVRLTIPRRVYTYA 415
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 49.9 bits (118), Expect = 4e-07
Identities = 34/295 (11%), Positives = 76/295 (25%), Gaps = 23/295 (7%)
Query: 126 LTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184
G ++ + + A + Y A H + A+
Sbjct: 122 FFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYAS--------HKSPIKAV 173
Query: 185 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244
S N + +L G + + +E K+ + D
Sbjct: 174 SFVGMNMRL--VETVLDGD--RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD 229
Query: 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPV 302
+ + +C Y+I I + + + R D V+ K L +
Sbjct: 230 --IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGG 287
Query: 303 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 362
D E + I G + + V++ S+ +L + + + L + L
Sbjct: 288 LVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 347
Query: 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 417
+ ++ +V + +I K+ +
Sbjct: 348 DLSKKTGGKFLDVESPIASCIS------VNSDPVEIAAKLYNLRVTGPRGIKKTD 396
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 45.7 bits (106), Expect = 6e-06
Identities = 39/365 (10%), Positives = 82/365 (22%), Gaps = 30/365 (8%)
Query: 79 DFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF-PVFAERLTSMFGYD--MV 135
F++ YS HPKI+ + + D A + + V
Sbjct: 3 SFVNDYSVG----MHPKILDLMARDNMT---QHAGYGQDSHCAKAARLIGELLERPDADV 55
Query: 136 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG 195
++ G + A LA + + +
Sbjct: 56 HFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP------- 108
Query: 196 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 255
K+ DI + + I ++ E G
Sbjct: 109 -------DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKE 161
Query: 256 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 315
L + + S + + R + A G + A++ + +
Sbjct: 162 HGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPN 221
Query: 316 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375
+ I +++D E AH + ++
Sbjct: 222 ARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPS 281
Query: 376 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 435
LF +E ++ + I+RL + E +
Sbjct: 282 ASNQLFPILE------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVE 335
Query: 436 ALHDV 440
L +
Sbjct: 336 VLKRL 340
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 470 | |||
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.98 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.98 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.97 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.96 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.96 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.96 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.95 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.95 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.95 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.95 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.94 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.94 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.93 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.93 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.92 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.91 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.91 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.91 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.9 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.9 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.9 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.9 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.88 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.88 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.88 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.88 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.87 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.87 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.86 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.86 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.85 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.84 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.83 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.82 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.82 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.81 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.79 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.78 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.77 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.77 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.77 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.76 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.76 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.75 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.74 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.73 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.72 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.72 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.71 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.71 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.7 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.69 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.68 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.64 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.64 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.62 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.62 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.6 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.57 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.53 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.53 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.52 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.52 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.5 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.49 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.42 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.4 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.36 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.34 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-71 Score=552.53 Aligned_cols=400 Identities=52% Similarity=0.913 Sum_probs=372.0
Q ss_pred CchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC
Q 012138 37 SSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN 116 (470)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~ 116 (470)
++++++++++++|.+++|.|+|++++|++|+|+||.||++||||.+++++.++||+||+|++|+.+|++++.+.+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~ 82 (404)
T d2byla1 3 PTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 82 (404)
T ss_dssp CCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEE
T ss_pred CcHHHHHHHHHHhccCCCCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998876665667
Q ss_pred CcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 117 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
....++++.+++..+.++++|++||+||++.|+++++.+++..+....++..++.+.++|||++..+++.++++..+..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~ 162 (404)
T d2byla1 83 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGF 162 (404)
T ss_dssp SSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTS
T ss_pred chHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCC
Confidence 77888999999999999999999999999999999998776655545567789999999999999999999999888999
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.|..+++..+|++|++++++++.+ +++++||+||+++.+|.+.|+++|+++|+++|++||++||+|||++||||+|++
T Consensus 163 ~p~~~~~~~~p~~d~~~l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 163 GPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp CSCCTTEEEECTTCHHHHHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCeeEecccCHHHHHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc
Confidence 999999999999999999999975 389999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 356 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~ 356 (470)
|+++++|+.||++++||+++||++|+|++++++++++.+.+..+++||++||++|+++.++|+.++++++.+++++++.+
T Consensus 241 ~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~ 320 (404)
T d2byla1 241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGII 320 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHH
Confidence 99999999999999999999996699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKA 436 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~ 436 (470)
+++.|+++... .+..+++.|++..+++..+. .....++.++|+++||++.+.+++.+||+||+++|+++|++++++
T Consensus 321 l~~~l~~l~~~---~i~~vRg~Gl~~~i~~~~~~-~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~ 396 (404)
T d2byla1 321 LRNELMKLPSD---VVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEI 396 (404)
T ss_dssp HHHHHHTSCTT---TEEEEEEETTEEEEEECCCS-SCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHhhccc---cceeeeecccEEEEEEecCC-chhHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHH
Confidence 99999987543 68899999999999886543 236778999999999999887789999999999999999999999
Q ss_pred HHHHHh
Q 012138 437 LHDVLE 442 (470)
Q Consensus 437 l~~~l~ 442 (470)
|+++|.
T Consensus 397 l~~al~ 402 (404)
T d2byla1 397 INKTIL 402 (404)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999997
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.5e-68 Score=525.46 Aligned_cols=384 Identities=33% Similarity=0.562 Sum_probs=355.4
Q ss_pred HHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcH
Q 012138 40 QQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKF 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 119 (470)
+++++.++++....|.+.|++++|++|+|+||.|||+||||.+++++.++||+||+|.+++.++++++.+.+..+.++..
T Consensus 2 ~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~ 81 (387)
T d1vefa1 2 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMR 81 (387)
T ss_dssp HHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHH
T ss_pred hhHHhhhhhccCCCCCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchH
Confidence 46888899999999999999999999999999999999999999999999999999999999999998766666677788
Q ss_pred HHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 120 PVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 120 ~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
.++++.+.+..+ .++++|++||+||++.|+++++.++ ++..|+.+.++|||++..+.++++.+.++.++.
T Consensus 82 ~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t--------~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~ 153 (387)
T d1vefa1 82 GEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT--------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFL 153 (387)
T ss_dssp HHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGC
T ss_pred HHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhc--------ccceecccccCCCCCccceEeccCCccccCCCC
Confidence 888888887764 4689999999999999999999863 567999999999999999999999988888899
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
|...++..+||||+++|++.+++ ++++||+||+++.+|.+.++++|+++|+++|++||++||+|||++||||+|.++
T Consensus 154 p~~~~~~~~p~~d~~~l~~~~~~---~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~ 230 (387)
T d1vefa1 154 PLVEPVEFIPYNDVEALKRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 230 (387)
T ss_dssp SCSSCEEEECTTCHHHHHHHCCT---TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCceEeCCCCHHHHHHhcCC---CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCc
Confidence 98888999999999999999875 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012138 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 357 (470)
Q Consensus 278 ~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l 357 (470)
+++++++.||+++++|+++||+ +++++++.+++++.+.+..+++||++||++|+++.++|+.++++++.++++++++++
T Consensus 231 ~~~~~~v~PDi~~~gK~l~gG~-~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l 309 (387)
T d1vefa1 231 AFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF 309 (387)
T ss_dssp THHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccccCCcCCceeeecccCCCCc-cccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
++.|+++... .+..+++.|+++.++++.+ ....+.+.++++|+++.+.+++.+||+||+++|++||++++++|
T Consensus 310 ~~~L~~l~~~---~v~~vrg~Gl~~~ie~~~~----~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i 382 (387)
T d1vefa1 310 MEKLRAIPSP---KIREVRGMGLMVGLELKEK----AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 382 (387)
T ss_dssp HHHHHTSCCT---TEEEEEEETTEEEEEESSC----SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCC---ceEEEeecceEEEEEEeCC----chHHHHHHHHHCCCeEEecCCCEEEEECCccCCHHHHHHHHHHH
Confidence 9999887543 6889999999999999765 45678888889999988888899999999999999999999999
Q ss_pred HHHHh
Q 012138 438 HDVLE 442 (470)
Q Consensus 438 ~~~l~ 442 (470)
+++|.
T Consensus 383 ~~aLS 387 (387)
T d1vefa1 383 RAVLA 387 (387)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99873
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=2.3e-67 Score=523.67 Aligned_cols=402 Identities=47% Similarity=0.855 Sum_probs=345.5
Q ss_pred chHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCC
Q 012138 38 SSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYND 117 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 117 (470)
+.+++++.+++|.+|.|.|+|+++++++|+|+||.|||+||||.+++++.++||+||+|.+|+.++++++.+.+..+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~ 81 (404)
T d1z7da1 2 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 81 (404)
T ss_dssp CHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEH
T ss_pred CHHHHHHHHHhcCCCCCCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999887766555555
Q ss_pred cHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCC
Q 012138 118 KFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG 197 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 197 (470)
....+++.+.+..+.+.+.|++||++|++.|+++++.++............++.+.++|||.+......+....++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~ 161 (404)
T d1z7da1 82 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFG 161 (404)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------------
T ss_pred HHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCC
Confidence 66777777888889999999999999999999999987655444445566899999999999999999988888887788
Q ss_pred CCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc
Q 012138 198 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 277 (470)
Q Consensus 198 ~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~ 277 (470)
+..+....+|+++.+.++..+.. +++++||+||+++++|.+.|+++|+++|+++|++||++||+||||+||||+|.+|
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~~--~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~ 239 (404)
T d1z7da1 162 PFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 239 (404)
T ss_dssp ----CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCccccccccchHHHHHHHhcC--CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc
Confidence 88888999999999999988865 4899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 012138 278 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 357 (470)
Q Consensus 278 ~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l 357 (470)
+++++++.||++++||+++||++|+|++++++++++.+.+..+++||++||++|+++.++|+.+.++++.+++.+++..+
T Consensus 240 ~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~ 319 (404)
T d1z7da1 240 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPF 319 (404)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHH
Confidence 99999999999999999999866999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 437 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l 437 (470)
.+.|.++...+| .+..+++.|+|+.+++..+. ....+++++|+++||++.+.+++.|||+||+++|+++|++++++|
T Consensus 320 ~~~l~~~~~~~~-~v~~vrg~Gl~~~i~~~~~~--~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l 396 (404)
T d1z7da1 320 LENLKRELKDSK-IVRDVRGKGLLCAIEFKNEL--VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 396 (404)
T ss_dssp HHHHHHHHTTCT-TEEEEEEETTEEEEEECTTT--CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CeEEEEeeCcEEEEEEcCCc--ccHHHHHHHHHhCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHH
Confidence 999999888876 88999999999999997654 256779999999999999888899999999999999999999999
Q ss_pred HHHHhccc
Q 012138 438 HDVLELDL 445 (470)
Q Consensus 438 ~~~l~~~~ 445 (470)
+++++ ++
T Consensus 397 ~~alk-~~ 403 (404)
T d1z7da1 397 VKTVK-FF 403 (404)
T ss_dssp HHHHH-HH
T ss_pred HHHHH-hh
Confidence 99998 75
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-65 Score=514.37 Aligned_cols=399 Identities=28% Similarity=0.539 Sum_probs=347.1
Q ss_pred chHHHHHHHhhhcccCC-CCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC-CCCC
Q 012138 38 SSQQLINLEYEYSAHNY-HPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS-RAFY 115 (470)
Q Consensus 38 ~~~~~~~~~~~~~~~~~-~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 115 (470)
++++++++.++++...+ .++|++++|++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+.. ..+.
T Consensus 2 ~~~~l~~r~~~~~~~g~~~~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~ 81 (425)
T d1sffa_ 2 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 81 (425)
T ss_dssp CHHHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEE
T ss_pred chHHHHHHHHHhcCCCCCCCCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccccc
Confidence 57899999999988775 468999999999999999999999999999999999999999999999999987654 3345
Q ss_pred CCcHHHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 116 NDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
++...+++++|.+..+ .++++|++||+||++.|+|+++.++ ++..|+.+.++|||++..++++++....
T Consensus 82 ~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t--------~r~~ii~~~~~yHG~t~~~~~~t~~~~~ 153 (425)
T d1sffa_ 82 YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT--------KRSGTIAFSGAYHGRTHYTLALTGKVNP 153 (425)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--------TCCEEEEETTCCCCSSHHHHHHSSCCTT
T ss_pred CcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhh--------cccceEeecCCCcCccccchhhcCCCCc
Confidence 7788899999999884 4689999999999999999999863 6678999999999999999999887665
Q ss_pred ccCCCCCCCC-eeeecCC----C------HHHHHHHHHh--cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCc
Q 012138 193 IRGFGPLLPG-HLKVDFG----D------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 259 (470)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~----d------~~~Le~~l~~--~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gi 259 (470)
...+.+..+. ....+++ + .+..++.+.. ..+++++||+||+++.+|.+.|+++|+++|+++|++||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gi 233 (425)
T d1sffa_ 154 YSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI 233 (425)
T ss_dssp TTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC
T ss_pred ccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCc
Confidence 5555444443 2222222 0 1122232222 235799999999999999999999999999999999999
Q ss_pred EEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHH
Q 012138 260 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 339 (470)
Q Consensus 260 llI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 339 (470)
+||+|||++||||+|.+|+++++|+.||++++||+++||+ |+|++++++++++.+.+..+++||++||++|+++.++|+
T Consensus 234 llI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG~-P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~ 312 (425)
T d1sffa_ 234 MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLK 312 (425)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred eEEeccccccCCCcchhhHHHhcCCCccceecccccCCCc-ceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCceeccC--
Q 012138 340 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPT-- 412 (470)
Q Consensus 340 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~-- 412 (470)
.++++++.++++.+++++++.|+++..++| .+..+++.|+++.+++..+.. ......+.++|+++||++.+.
T Consensus 313 ~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~ 391 (425)
T d1sffa_ 313 VFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP 391 (425)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhHhhCC-ceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCC
Confidence 999999999999999999999999999887 789999999999999854321 124567889999999998765
Q ss_pred CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 413 HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 413 ~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
..+.+||+||+.+|++||++++++|+++++ ++++
T Consensus 392 ~~n~i~~~PpL~it~~eid~~l~~l~~al~-eikk 425 (425)
T d1sffa_ 392 YYNVLRILVPLTIEDAQIRQGLEIISQCFD-EAKQ 425 (425)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HhcC
Confidence 368999999999999999999999999999 8764
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-63 Score=497.68 Aligned_cols=396 Identities=27% Similarity=0.454 Sum_probs=339.0
Q ss_pred HHHHHHHhhhcccCCC----CCceE-EEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-C
Q 012138 40 QQLINLEYEYSAHNYH----PVPIV-FSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-A 113 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~----~~p~~-~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~ 113 (470)
.+.++.+++|.+|.|. +.|+. +++++|+|+||.||++||||.+++++.++||+||+|.+++.+|++++.+... .
T Consensus 3 ~~~~~~d~~h~~~p~~~~~~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~ 82 (429)
T d1s0aa_ 3 TDDLAFDQRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG 82 (429)
T ss_dssp HHHHHHHHHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSS
T ss_pred HHHHHHHHHhcCCCcccCCCCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCC
Confidence 4445688889998774 45664 8999999999999999999999999999999999999999999999876543 3
Q ss_pred CCCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 114 FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
+.++...++++++.+.. +.++++|++||+||++.|+++++.++..+ + .++..||++.++|||++.++.++++...
T Consensus 83 ~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~-g--~~~~~ii~~~~~yHG~t~~a~~~t~~~~ 159 (429)
T d1s0aa_ 83 ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK-G--EARQRFLTFRNGYHGDTFGAMSVCDPDN 159 (429)
T ss_dssp EECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHH-T--CCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred ccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecc-c--ccccEEEEecCCccccchhhhhhcCCcc
Confidence 45667788889988876 56889999999999999999999864332 2 2455899999999999999999987654
Q ss_pred cccCCCCCC-CCee-----------eecCCCHHHHHHHHHhcCCCeEEEEEcccc-CCCccccCChhhHHHHHHHHHhcC
Q 012138 192 AIRGFGPLL-PGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPIQ-GEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 192 ~~~~~~~~~-~~~~-----------~~~~~d~~~Le~~l~~~~~~~~~vi~epi~-n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
....+.+.. .... ..++++++++++.+.++++++++||+||++ +.+|.+.|+++|+++|+++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~g 239 (429)
T d1s0aa_ 160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred ccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence 443332211 1111 112235788888888877899999999976 777888889999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC-----CccCCCCCCHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----EHGSTFGGNPLASAV 333 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~-----~~~~t~~~~~~~~aa 333 (470)
++||+||||+||||+|.+|+++++++.||+++++|+++||++|+|++++++++++.+.+. .+++||++||++|++
T Consensus 240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aa 319 (429)
T d1s0aa_ 240 ILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319 (429)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred cceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchh
Confidence 999999999999999999999999999999999999998866999999999999887542 478999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC
Q 012138 334 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 413 (470)
Q Consensus 334 a~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 413 (470)
+.++|+.++++++.+++++++++|+++|+++.. + +.+.++++.|+|..+++..+. ....+.+.|+++||++.+.
T Consensus 320 a~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~-~-~~v~~vrg~Gl~~~~e~~~~~---~~~~~~~~~~~~Gl~~~~~- 393 (429)
T d1s0aa_ 320 ANASLAILESGDWQQQVADIEVQLREQLAPARD-A-EMVADVRVLGAIGVVETTHPV---NMAALQKFFVEQGVWIRPF- 393 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-C-TTEEEEEEETTEEEEEESSCB---CHHHHHHHHHHTTEECCCB-
T ss_pred hhccccccccccccchhhHHHHHHHHHHHHhcc-C-CceEEEeecccEEEEEecCcc---cHHHHHHHHHHCCcEEEec-
Confidence 999999999999999999999999999988754 3 488899999999999997765 6788999999999999886
Q ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 414 DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 414 ~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
++.+||+||+++|++||++++++|+++|+ |.
T Consensus 394 g~~i~~~Ppl~it~~eid~~~~~l~~al~-e~ 424 (429)
T d1s0aa_ 394 GKLIYLMPPYIILPQQLQRLTAAVNRAVQ-DE 424 (429)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHTS-SG
T ss_pred CCEEEEeCCcCCCHHHHHHHHHHHHHHHH-hh
Confidence 57999999999999999999999999998 64
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=2e-63 Score=499.85 Aligned_cols=394 Identities=29% Similarity=0.486 Sum_probs=340.0
Q ss_pred HHHHHHHhhhcccCCCCC-ceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCc
Q 012138 40 QQLINLEYEYSAHNYHPV-PIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDK 118 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 118 (470)
+++.+...+|.++++.++ |+++++++|+|+||.|||+||||.+++++.++||+||+|.+++.+|++++.+....+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~ 84 (431)
T d1zoda1 5 ATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRP 84 (431)
T ss_dssp HHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHH
T ss_pred HHHHHhhHHHhhccCCCCCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHH
Confidence 456677777888877665 9999999999999999999999999999999999999999999999999887666667888
Q ss_pred HHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 119 FPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
..+++++|.+.. +.++++|++||+||++.|+|+++.+ .+++.|+.+.++|||.+..+++++..+ .+..+
T Consensus 85 ~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~--------t~r~~i~~~~~~yHG~t~~~~~~~~~~-~~~~~ 155 (431)
T d1zoda1 85 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV--------TGKYEIVGFAQSWHGMTGAAASATYSA-GRKGV 155 (431)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH--------HTCCEEEEETTCCCCSSHHHHHTCCSS-CCSSS
T ss_pred HHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHh--------cCCcceeecccccccccchhhcccccc-ccccc
Confidence 899999999987 6799999999999999999999986 367799999999999999998888754 34445
Q ss_pred CCCCCCeeeecCC-----------------CHHHHHHHHHh-cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC
Q 012138 197 GPLLPGHLKVDFG-----------------DITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 258 (470)
Q Consensus 197 ~~~~~~~~~~~~~-----------------d~~~Le~~l~~-~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g 258 (470)
.+...+...+++. +++.++..+.. .++++++||+||+++.+|.+.|+++|+++|+++|++||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~g 235 (431)
T d1zoda1 156 GPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG 235 (431)
T ss_dssp CCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcC
Confidence 5555554444322 13444444433 34689999999999999999999999999999999999
Q ss_pred cEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc--CCccCCCCCCHHHHHHHHH
Q 012138 259 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP--GEHGSTFGGNPLASAVAIA 336 (470)
Q Consensus 259 illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~--~~~~~t~~~~~~~~aaa~a 336 (470)
++||+|||++||||+|.+|+++++|+.||+++++|+++||+ +++++++.+++++.+.. ..+++||+++|++|+++.+
T Consensus 236 illI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~-p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a 314 (431)
T d1zoda1 236 MLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLR 314 (431)
T ss_dssp CEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred ceEEeccccccccccccccccccCCCCcchhcccccccccc-ccceeeeeecchhhhhcccccccCCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999998 99999999988876533 3578999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC-----chhHHHHHHHHHHcCcee--
Q 012138 337 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILA-- 409 (470)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gv~~-- 409 (470)
+|+.++++++.+++.++++++.+.++++..++| .+.++++.|+|+.+++..+.. ......+.+.|+++|+..
T Consensus 315 ~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~ 393 (431)
T d1zoda1 315 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI 393 (431)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE
T ss_pred HHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCC-CeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCe
Confidence 999999999999999999999999999988886 899999999999998853221 124677899999999853
Q ss_pred --ccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 410 --KPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 410 --~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.++.++.+||+||+++|++||++++++|+++|+ ++
T Consensus 394 ~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~-~v 430 (431)
T d1zoda1 394 VQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE-RA 430 (431)
T ss_dssp ECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred eeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 455688999999999999999999999999998 64
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=6.6e-63 Score=498.53 Aligned_cols=403 Identities=22% Similarity=0.352 Sum_probs=336.4
Q ss_pred CCCCCCchHHHHHHHhhhcccCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccC
Q 012138 32 TSPSSSSSQQLINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSS 111 (470)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 111 (470)
+..|++++++++++.+++......++|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++...+.+
T Consensus 10 ~~~pgp~s~~l~~~~~~~~~~~~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~ 89 (461)
T d1ohwa_ 10 TEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFIN 89 (461)
T ss_dssp SCSSCHHHHHHHHHHHHHSCCTTCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHC
T ss_pred cCCCChHHHHHHHHHHHhcCCCCCCCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcc
Confidence 55777889999999998887777778999999999999999999999999999999999999999999999987765432
Q ss_pred CC-C----CCCcHHHHHHHHhhhh--CCCeEEecCChhHHHHHHHHHHHHhchhcc-c-----------------CCCCC
Q 012138 112 RA-F----YNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKK-K-----------------FSIDE 166 (470)
Q Consensus 112 ~~-~----~~~~~~~l~~~l~~~~--~~~~v~~~~sGteA~~~al~~~~~~~~~~~-~-----------------~~~g~ 166 (470)
.. + ...+.++|+++|.+.. +.++++|++||+||++.|+++++.|...+. + ...++
T Consensus 90 ~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (461)
T d1ohwa_ 90 RPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPD 169 (461)
T ss_dssp CCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCC
T ss_pred cccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCC
Confidence 21 1 2334556777666654 568999999999999999999987632210 0 01345
Q ss_pred cEEEEEccCccccccchhcccCCcccccCCCCCCCCee-eec---C--------------CCHHHHHHHHH---hcCCCe
Q 012138 167 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL-KVD---F--------------GDITALEKIFK---ESGDQI 225 (470)
Q Consensus 167 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--------------~d~~~Le~~l~---~~~~~~ 225 (470)
..||++.++|||++.+++++++.+.++..+.+...... ..+ + ++.+++++++. .+++++
T Consensus 170 ~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 249 (461)
T d1ohwa_ 170 YSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTV 249 (461)
T ss_dssp CEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCcc
Confidence 68999999999999999999998766655554433211 111 1 12455666654 345689
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCC--cceeeccccccCCCccee
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKALGGGVIPVS 303 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~--pdi~s~sK~l~gG~~~ig 303 (470)
++||+||+++.+|.+.|+++|+++|+++|++||++||+||||+||||+|++|+++++++. ||+++++|+++||+ +.
T Consensus 250 AavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~-~~- 327 (461)
T d1ohwa_ 250 AGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGG-FF- 327 (461)
T ss_dssp EEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEE-EE-
T ss_pred ceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccccc-cc-
Confidence 999999999999999999999999999999999999999999999999999999999984 99999999999876 22
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
.. +++....+..+++||+++|++|+++.++|+.++++++.+++++++++|.++|+++..++|..+.++++.|++++
T Consensus 328 ---~~-~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ 403 (461)
T d1ohwa_ 328 ---HK-EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCS 403 (461)
T ss_dssp ---EC-GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEE
T ss_pred ---cc-cccccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEE
Confidence 22 23334455678999999999999999999999999999999999999999999999988778999999999999
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
+++.... ...++++.|+++||++.+.+++.|||.||+++|++|+++++++|+++|. |
T Consensus 404 ie~~~~~---~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~-e 460 (461)
T d1ohwa_ 404 FDTPDES---IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA-D 460 (461)
T ss_dssp EECSSHH---HHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHH-T
T ss_pred EEcCCHH---HHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHh-c
Confidence 9986543 6778999999999999988889999999999999999999999999998 6
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=9.1e-62 Score=486.23 Aligned_cols=394 Identities=26% Similarity=0.417 Sum_probs=335.0
Q ss_pred CCchHHHHHHHhhhccc----------CCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHH
Q 012138 36 SSSSQQLINLEYEYSAH----------NYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAE 105 (470)
Q Consensus 36 ~~~~~~~~~~~~~~~~~----------~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~ 105 (470)
..++++++++.++++.. .+.+.|+++++++|+|+||.||++||||.+++++.++||+||+|.+++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~ 82 (427)
T d2gsaa_ 3 TIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAME 82 (427)
T ss_dssp CHHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHH
Confidence 46789999999998642 23456999999999999999999999999999999999999999999999998
Q ss_pred HccccCCCCCCCcHHHHHHHHhhhh-CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh
Q 012138 106 KLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 184 (470)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~ 184 (470)
+..+.. ........+++++.+.. +.++++|++||+||++.|+++++.++ ++..||++.++|||++..++
T Consensus 83 ~~~~~~--~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t--------~r~~ii~~~~~yHG~t~~~~ 152 (427)
T d2gsaa_ 83 KGTSFG--APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT--------GRDKIIKFEGCYHGHADMFL 152 (427)
T ss_dssp TCSCCS--SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEETTCCCCSCGGGC
T ss_pred hcCccc--cchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhc--------CCCeEEEEecccccCcceee
Confidence 865432 23455677888888876 46789999999999999999999863 67799999999999999999
Q ss_pred cccCCcccccCCC--CC-----CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc
Q 012138 185 SMSCDNEAIRGFG--PL-----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 257 (470)
Q Consensus 185 ~~~~~~~~~~~~~--~~-----~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~ 257 (470)
++++.+.....+. +. .++....+++|+++||++++++++++++||+||+++.+|.+.|+++|+++|+++|++|
T Consensus 153 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~ 232 (427)
T d2gsaa_ 153 VKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH 232 (427)
T ss_dssp SSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHT
T ss_pred eecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHh
Confidence 8887544333221 11 1346778899999999999987789999999999999999999999999999999999
Q ss_pred CcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCc---CCccCCCCCCHHHHHHH
Q 012138 258 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGGNPLASAVA 334 (470)
Q Consensus 258 gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa 334 (470)
|++||+||||+|| ++|.+|+++++++.||+++++|+++||+ |+|++++++++++.+.+ ..+++||++||++|+++
T Consensus 233 ~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG~-p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAa 310 (427)
T d2gsaa_ 233 DALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAG 310 (427)
T ss_dssp TCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHH
T ss_pred ceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCCc-ceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHH
Confidence 9999999999999 7899999999999999999999999998 99999999999998865 46789999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC----------chhHHHHHHHHHH
Q 012138 335 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKMKE 404 (470)
Q Consensus 335 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l~~ 404 (470)
.++|++++++++.+++++++++|++.|+++..+++ ....+.+.|.++.+.+..... ......+...|++
T Consensus 311 la~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~ 389 (427)
T d2gsaa_ 311 IKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE 389 (427)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcC-CCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876 444556666677775533211 1123467788999
Q ss_pred cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 405 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 405 ~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+||++.|.... ++.||+.+|++||++++++|+++++ ++
T Consensus 390 ~Gv~l~p~~~~--~~~~~l~~Te~dId~~l~al~~al~-~L 427 (427)
T d2gsaa_ 390 QGIYLAPSQFE--AGFTSLAHTEEDIDATLAAARTVMS-AL 427 (427)
T ss_dssp TTEECCSSTTS--CEECCTTCCHHHHHHHHHHHHHHHT-CC
T ss_pred CCEEECCCCCc--ceeCCCCCCHHHHHHHHHHHHHHHH-hC
Confidence 99999886543 3447899999999999999999998 64
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-39 Score=316.63 Aligned_cols=348 Identities=18% Similarity=0.260 Sum_probs=270.3
Q ss_pred CceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCCCC-----CCCcHHHHHHHHhhhh
Q 012138 57 VPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSRAF-----YNDKFPVFAERLTSMF 130 (470)
Q Consensus 57 ~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~ 130 (470)
...++++++|.++|+.||++||||+++ ..||+ .||+|++++.+++++++.++... ..+.+.++++.|++++
T Consensus 27 ~~~~i~~~~g~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~ 103 (401)
T d1fc4a_ 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred cceeccCCCCCeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh
Confidence 445788999999999999999999887 44665 49999999999999987654332 4577889999999999
Q ss_pred CCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCC
Q 012138 131 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 210 (470)
Q Consensus 131 ~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 210 (470)
|.+.+++++||++|+..+++.+.. .++.|+..... |.+...++..+... ...++|+|
T Consensus 104 g~e~al~~~SG~~An~~~i~~l~~----------~~d~i~~d~~~-h~s~~~G~~~~~a~------------~~~~~~~d 160 (401)
T d1fc4a_ 104 GMEDAILYSSCFDANGGLFETLLG----------AEDAIISDALN-HASIIDGVRLCKAK------------RYRYANND 160 (401)
T ss_dssp TCSEEEEESCHHHHHHTTHHHHCC----------TTCEEEEETTC-CHHHHHHHHTSCSE------------EEEECTTC
T ss_pred cCCceEEecchhhhhHHHHHHhcC----------CCcEEEeCCcc-hHHHHccccccCce------------EEEEcCCC
Confidence 999999999999999999987743 23356555555 77666655554422 45788999
Q ss_pred HHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCCCC
Q 012138 211 ITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVR 285 (470)
Q Consensus 211 ~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~~~ 285 (470)
+++++++++.. +...++|++|+++++.|.+.| |++++++|++||++||+||+|++ +|..|.+. .+++++.
T Consensus 161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~-~~~~~~~ 235 (401)
T d1fc4a_ 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred hHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhHHHHHHhhcCcEEEehhhhccccccCCCCcc-chhccCC
Confidence 99998887653 356678889999999999998 99999999999999999999994 45555553 4555553
Q ss_pred --ccee--eccccccCCCcceeEEEecHHHHhhcCcCCcc--CCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q 012138 286 --PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELR 358 (470)
Q Consensus 286 --pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~ 358 (470)
+|++ +++|+++ |. +.|++.+++++++.++....+ .+.+.+|..++++.++++.+.. ++++++++++..+++
T Consensus 236 ~~~dii~~tl~Ka~g-g~-~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~ 313 (401)
T d1fc4a_ 236 GRVDIITGTLGKALG-GA-SGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTC-SS-SCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeecccccc-cC-CcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHH
Confidence 4554 8999996 43 678899999999988644332 2334678888888888887765 678899999999999
Q ss_pred HHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHHHH
Q 012138 359 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNELQ 431 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~i~ 431 (470)
+.+...+. ......+.++.+.+... ..+.+++++|+++||++.+ .+...+|++++..+|+|||+
T Consensus 314 ~~l~~~g~------~~~~~~~pIv~v~~~~~---~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId 384 (401)
T d1fc4a_ 314 EQMSAAGF------TLAGADHAIIPVMLGDA---VVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQIT 384 (401)
T ss_dssp HHHHHTTC------CBCCSSSSEEEEEEECH---HHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHH
T ss_pred hhhcccCC------ccCCCCCCEEEEEECCH---HHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHH
Confidence 98887532 22233455666655543 2677899999999999763 24566999999999999999
Q ss_pred HHHHHHHHHHhcccCC
Q 012138 432 EGSKALHDVLELDLPK 447 (470)
Q Consensus 432 ~~~~~l~~~l~~~~~~ 447 (470)
+++++|+++.+ ++.-
T Consensus 385 ~~v~al~ev~~-~lg~ 399 (401)
T d1fc4a_ 385 RAVEAFTRIGK-QLGV 399 (401)
T ss_dssp HHHHHHHHHHH-HTTS
T ss_pred HHHHHHHHHHH-HhCC
Confidence 99999999998 7643
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-36 Score=296.22 Aligned_cols=344 Identities=19% Similarity=0.251 Sum_probs=264.2
Q ss_pred cCCCCCceEEEeecCCEEEeCCCCeEEeccCCcccccCCC-CCHHHHHHHHHHHHHccccCC---C--CCCCcHHHHHHH
Q 012138 52 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGH-CHPKIMKALQEQAEKLTLSSR---A--FYNDKFPVFAER 125 (470)
Q Consensus 52 ~~~~~~p~~~~~~~g~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~---~--~~~~~~~~l~~~ 125 (470)
+.|++. .++.++.|.++. .||++||||+++ ..||. .||++++++.+++++++..+. . ...+.+.+|++.
T Consensus 17 ~~~~~~-~~~~~~~g~~i~-~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~ 91 (383)
T d1bs0a_ 17 DALRRR-YPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEE 91 (383)
T ss_dssp GCCCCC-CCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHH
T ss_pred CCCccc-cccCCCCCCeEE-ECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHH
Confidence 344433 556899999997 899999999987 33454 599999999999999865432 1 245778999999
Q ss_pred HhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeee
Q 012138 126 LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 205 (470)
Q Consensus 126 l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (470)
|++++|.+.+++++||+.|+..++..+.. +++ .|+ .+...|.+...+...+.. .+..
T Consensus 92 LA~~~g~e~al~~~SG~~an~~~i~al~~---------~~d-~v~-~d~~~h~si~~g~~~~~~------------~~~~ 148 (383)
T d1bs0a_ 92 LAEWLGYSRALLFISGFAANQAVIAAMMA---------KED-RIA-ADRLSHASLLEAASLSPS------------QLRR 148 (383)
T ss_dssp HHHHHTCSEEEEESCHHHHHHHHHHHHCC---------TTC-EEE-EETTCCHHHHHHHHTSSS------------EEEE
T ss_pred HHHhcCCCceEEecccchhhHHHHHhhcC---------CCc-eEE-eeccccHHHhhccccCCC------------cceE
Confidence 99999999999999999999999987753 232 444 444558887776655442 2468
Q ss_pred ecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC--CcccCCccccccCC
Q 012138 206 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEE 283 (470)
Q Consensus 206 ~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g--~g~~G~~~~~~~~~ 283 (470)
++|||+++||+.+.+...+..+|++|.+++++|.+.| +++|.++|++||++||+||+|+. +|..|... .++++
T Consensus 149 ~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~-~~~~~ 223 (383)
T d1bs0a_ 149 FAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQK 223 (383)
T ss_dssp ECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTT
T ss_pred ecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCcccch-HHHcC
Confidence 9999999999999887667788999999999999999 99999999999999999999993 56666654 57788
Q ss_pred CCccee--eccccccCCCcceeEEEecHHHHhhcCcCCccC--CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Q 012138 284 VRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEE 356 (470)
Q Consensus 284 ~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~ 356 (470)
+.++++ ++||+++. ..|+++++.++++.++...... +...+|..++++.++++.++. +..+++..++..+
T Consensus 224 ~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~ 300 (383)
T d1bs0a_ 224 VKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITR 300 (383)
T ss_dssp CCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred Cccccccccccccccc---cccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 887766 56676653 5567899999998886543333 334678888888888888765 3455666777777
Q ss_pred HHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-------CCCCEEEEecCCCCCHHH
Q 012138 357 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------THDTIVRLTPPLSISSNE 429 (470)
Q Consensus 357 l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-------~~~~~iR~~~~~~~t~e~ 429 (470)
+++.|.+++ +....+...++.+.+..+ ..+.++.+.|+++||++.+ .+...+|++++..+|+||
T Consensus 301 ~~~~l~~~g------~~~~~~~s~Ii~v~~g~~---~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~ed 371 (383)
T d1bs0a_ 301 FRAGVQDLP------FTLADSCSAIQPLIVGDN---SRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQD 371 (383)
T ss_dssp HHHHHTTSS------CEECSCCSSBCCEEEESH---HHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHH
T ss_pred HHHHHHhcC------CccCCCCCCEEEEEECCH---HHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHH
Confidence 777776542 333344555555655443 3677899999999999863 235679999999999999
Q ss_pred HHHHHHHHHHH
Q 012138 430 LQEGSKALHDV 440 (470)
Q Consensus 430 i~~~~~~l~~~ 440 (470)
||+++++|..+
T Consensus 372 id~l~~~L~~~ 382 (383)
T d1bs0a_ 372 IDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=7.2e-34 Score=277.81 Aligned_cols=341 Identities=16% Similarity=0.210 Sum_probs=258.0
Q ss_pred eEEEeecCCEE------EeCCCCeEEeccCC-cccccCCCCCHHHHHHHHHHHHHccccCCC-----CCCCcHHHHHHHH
Q 012138 59 IVFSQAKGSSI------WDPEGNKYLDFLSA-YSAVNQGHCHPKIMKALQEQAEKLTLSSRA-----FYNDKFPVFAERL 126 (470)
Q Consensus 59 ~~~~~~~g~~~------~d~~G~~~lD~~~~-~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~l 126 (470)
..+++..|.+. .+..+++++||+++ |.+.. .||++++++.+.+++++.++.. ...+.+.+|+++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~---~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~l 99 (396)
T d2bwna1 23 IDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMG---QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI 99 (396)
T ss_dssp CEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGG---GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHH
T ss_pred cccccccCCCCcceEeecCCCCeEEEEEEcccccCcC---CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHH
Confidence 34567777532 22346899999987 54444 8999999999999998765421 2456789999999
Q ss_pred hhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeee
Q 012138 127 TSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV 206 (470)
Q Consensus 127 ~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (470)
++++|.+.+++++||..||..++..+... ++..+|..+...|.+...++.+++.+ +..+
T Consensus 100 A~~~g~e~all~~sG~~An~~~i~~l~~~---------~~~d~i~~D~~~Hasi~~g~~ls~a~------------~~~f 158 (396)
T d2bwna1 100 AGLHQKEAALVFSSAYNANDATLSTLRVL---------FPGLIIYSDSLNHASMIEGIKRNAGP------------KRIF 158 (396)
T ss_dssp HHHTTCSEEEEESCHHHHHHHHHHHHHHH---------STTCEEEEETTCCHHHHHHHHHSCCC------------EEEE
T ss_pred HHHhCCCceeeeecchHHHHHHHHHHhcc---------cCCCceeehhhhhhccchhhhccccC------------ceEe
Confidence 99999999999999999999999876431 23345555555588887777766532 4688
Q ss_pred cCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-CcccCCccccccCC
Q 012138 207 DFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEE 283 (470)
Q Consensus 207 ~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g-~g~~G~~~~~~~~~ 283 (470)
+|||+++++++++... .+...|++|.++++.|.+.| +++|.++|++||+.|++||+|+ | +|.+|++. .++++
T Consensus 159 ~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~-~~~~~ 233 (396)
T d2bwna1 159 RHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGV-AERDG 233 (396)
T ss_dssp CTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCH-HHHHT
T ss_pred ecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeeccceeeeeeccccccc-hhhcC
Confidence 9999999999887643 35678889999999999999 9999999999999999999999 4 67788775 34455
Q ss_pred CC--ccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCCC--CCHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 012138 284 VR--PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG--GNPLASAVAIASLDVIRD---EKLAERSAHLG 354 (470)
Q Consensus 284 ~~--pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~--~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~ 354 (470)
+. .|++ ||||++|. ..|++++++++++.++....+..|+ .+|..++++.++++.+.. +.++++++.+.
T Consensus 234 ~~~~~di~~gTlsKa~g~---~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~ 310 (396)
T d2bwna1 234 LMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHA 310 (396)
T ss_dssp CGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred Cceeeeeeeecccccccc---cccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 43 3544 99999983 2245889999999997655555555 677888888888988765 33566677788
Q ss_pred HHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHH-HcCceecc-------CCCCEEEEecCCCCC
Q 012138 355 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKP-------THDTIVRLTPPLSIS 426 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~-------~~~~~iR~~~~~~~t 426 (470)
+++++.|.+++.. .......++.+.+..+ ..+..++++|+ ++||++.+ .+...+||+++..+|
T Consensus 311 ~~~~~~l~~~g~~------~~~~~spIvpv~ig~~---~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht 381 (396)
T d2bwna1 311 KVLKMRLKALGMP------IIDHGSHIVPVVIGDP---VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHD 381 (396)
T ss_dssp HHHHHHHHHHTCC------BCCCSSSCEEEECCCH---HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSC
T ss_pred HHHHHHHHhcCCC------cCCCCCCEEEEEeCCH---HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCC
Confidence 8888888776422 1233455666655443 26778888866 57998753 245689999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012138 427 SNELQEGSKALHDV 440 (470)
Q Consensus 427 ~e~i~~~~~~l~~~ 440 (470)
++||++++++|+++
T Consensus 382 ~edId~l~~~L~~i 395 (396)
T d2bwna1 382 LKQIDGLVHAMDLL 395 (396)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=2.2e-31 Score=262.40 Aligned_cols=333 Identities=15% Similarity=0.157 Sum_probs=226.5
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc--CCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS--SRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.+|||..|.+ ....+|++++++.++++...+. +.....++++.+++++.+..+ .++|++|+|+++|+.
T Consensus 29 ~G~~vi~l~~g~p---~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~ 105 (382)
T d1b5pa_ 29 QGVDLVALTAGEP---DFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (382)
T ss_dssp TTCCCEECCCSSC---SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCCCC---CCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHH
Confidence 4677899988843 3447899999999988764322 222334567777777766654 468999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..|+|.+........+.. .... +..+ +.... |++++++++++ ++
T Consensus 106 ~~~~~l~~---------~gd-~vl~~~P~y~~~~~~~~~~g~~-~~~v---~~~~~~~~~~---d~~~l~~~~~~---~~ 165 (382)
T d1b5pa_ 106 NLFQAILD---------PGD-EVIVLSPYWVSYPEMVRFAGGV-VVEV---ETLPEEGFVP---DPERVRRAITP---RT 165 (382)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTCE-EEEE---ECCGGGTTCC---CHHHHHTTCCT---TE
T ss_pred HHHHHhCC---------CCC-EEEECCCCcHHHHHHHHHhcCe-EEEE---ecccccccCC---CHHHHHHhCCC---CC
Confidence 99997754 455 7888999997654433322221 1100 0000 00111 78888887765 67
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccC--CCCcceeecccccc-CCCcc
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE--EVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~--~~~pdi~s~sK~l~-gG~~~ 301 (470)
++++ ++| +||||.++ +.+.+++|.++|++||++||+||+|.++.+.+........ +...-+.+|||.++ +|+ |
T Consensus 166 ~~i~~~~P-~NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~Gl-R 242 (382)
T d1b5pa_ 166 KALVVNSP-NNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGW-R 242 (382)
T ss_dssp EEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGG-C
T ss_pred eEEEECCC-CCCcchhC-CHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHh-h
Confidence 7766 566 99999999 9999999999999999999999999988766655322111 11112348999998 899 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHH-hh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI-RD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~-~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
+||+++++++++.+.........+.+.+.+.++.+.+... .. +..++.++.+.+.+.+.+...+ +....
T Consensus 243 ~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~~ 316 (382)
T d1b5pa_ 243 IGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG------LKAVR 316 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------CCBCC
T ss_pred eEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcC------CeEec
Confidence 9999999999887755444445556666655555444321 11 2334444555555555555542 33345
Q ss_pred ccceeEEE-EeccCCCchhHHHHHHHHHHcCceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 377 GRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 377 ~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
++|.++.| .+... ..+...+.+.|.++||.+.|+ ..+++|++ +..++|++++++++|.++|
T Consensus 317 p~gg~~~~~~~~~~--~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis--~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 317 PSGAFYVLMDTSPI--APDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS--YATSEENLRKALERFARVL 382 (382)
T ss_dssp CSBTTEEEEECTTT--CSSHHHHHHHHHHTTEECEESGGGTCTTEEEEE--CCSCHHHHHHHHHHGGGGC
T ss_pred CCceEEEeEeCCCC--CCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEE--EcCCHHHHHHHHHHHHHhC
Confidence 66665555 44322 236788999999999999986 36899999 5578999999999998764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.98 E-value=2.3e-31 Score=262.67 Aligned_cols=337 Identities=15% Similarity=0.143 Sum_probs=229.9
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
+|+.+|||..|. +....++.+++++.+.++.... ++.....++++.+++++.+..+ .++|++|+|+++|+.
T Consensus 28 ~g~~vi~l~~G~---p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~ 104 (388)
T d1j32a_ 28 EGIDVCSFSAGE---PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSS---CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCCC---CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence 466789998884 3344789999999999876432 1222234557777777776654 467999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++.+.. +|+ .|++..|+|.+.........+.... . +... +.+.+ |+++|++.++. ++
T Consensus 105 ~~~~~~~~---------~gd-~Vlv~~P~y~~~~~~~~~~~~~~v~-~---~~~~~~~~~~---d~~~l~~~~~~---~~ 164 (388)
T d1j32a_ 105 NLMLAMIE---------PGD-EVIIPAPFWVSYPEMVKLAEGTPVI-L---PTTVETQFKV---SPEQIRQAITP---KT 164 (388)
T ss_dssp HHHHHHCC---------TTC-EEEEESSCCTHHHHHHHHTTCEEEE-E---CCCGGGTTCC---CHHHHHHHCCT---TE
T ss_pred HHHHHHhC---------CCC-EEEEcCCCcHHHHHHHHHhcCeEEE-E---ecccccccCC---CHHHHHHhCCC---CC
Confidence 99987754 455 8888999997654333222221110 0 0000 01112 89999988875 67
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccC-----CCCcceeecccccc-C
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWE-----EVRPDMVILGKALG-G 297 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~-----~~~pdi~s~sK~l~-g 297 (470)
++++ ++| +||||.++ +.+.+++|.++|++||++||+||+|..+.+.+..+. .... +...-+.+|||.++ +
T Consensus 165 ~~~~~~~P-~NPTG~~~-~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~ 242 (388)
T d1j32a_ 165 KLLVFNTP-SNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred eEEEECCC-CCCCCccc-chhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcc
Confidence 7666 666 99999999 999999999999999999999999987765543321 1111 01112448999998 8
Q ss_pred CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE
Q 012138 298 GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 375 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~ 375 (470)
|+ |+||+++++++++.+.........+.+..++.++...+...++ .+.++.++++.+.+.+.|+++ + .+...
T Consensus 243 Gl-RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~-g~~~~ 316 (388)
T d1j32a_ 243 GW-RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM----P-GLECP 316 (388)
T ss_dssp TT-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC----T-TCBCC
T ss_pred hh-HeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC----C-CCEec
Confidence 98 9999999999998776544445556777777777666543221 234444555555555555442 2 34445
Q ss_pred eccceeEEE-EeccCCCchhHHHHHHHHHH-cCceeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 376 RGRGLFNAV-EFDKTALPVSAYDICLKMKE-RGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 376 ~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.++|.++.| .+... ..+..+++++|.+ .||.+.|+ .++++|++ +..++|++++++++|+++++ .+
T Consensus 317 ~p~gg~~l~~~l~~~--~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls--~~~~~e~l~~al~rl~~~l~-~l 387 (388)
T d1j32a_ 317 KPDGAFYMFPSIAKT--GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLS--YATDLDTIKRGMERLEKFLH-GI 387 (388)
T ss_dssp CCCBTTEECCBCGGG--TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEE--CCSCHHHHHHHHHHHHHHHH-HH
T ss_pred CCCceEEEEEECCCC--CCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EeCCHHHHHHHHHHHHHHHH-Hh
Confidence 566666655 33322 1356788888765 49999886 47899999 45799999999999999998 54
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=4e-30 Score=253.90 Aligned_cols=336 Identities=13% Similarity=0.122 Sum_probs=224.5
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~~ 147 (470)
+.+|||..|.+. ...++.+.+++.++++.... .+.....++++++++++.+..+ .++|++|+|+++++..
T Consensus 25 ~dvi~l~~g~p~---~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 25 KDVISLGIGEPD---FDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TTCEECCCCSCC---SCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CCeEECCCCCCC---CCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence 457899887433 33789999999999876322 2222334556677777765432 3579999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.++.. +|+ .|++..|+|.+........+..... . +..+ +.+.+ |+++|++.+++ +++
T Consensus 102 ~~~~l~~---------~gd-~vlv~~P~y~~~~~~~~~~g~~~~~-~---~~~~~~~~~~---d~~~l~~~~~~---~~~ 161 (388)
T d1gdea_ 102 GLSAFLK---------DGE-EVLIPTPAFVSYAPAVILAGGKPVE-V---PTYEEDEFRL---NVDELKKYVTD---KTR 161 (388)
T ss_dssp HHTTTCC---------TTC-EEEEEESCCTTHHHHHHHHTCEEEE-E---ECCGGGTTCC---CHHHHHHHCCT---TEE
T ss_pred HHHHhcC---------CCC-EEEECCCCcHHHHHHHHHcCCEEEE-e---ecccccCCCC---CHHHHHHhCcc---CCe
Confidence 9887654 565 7888999997665444333321110 0 0000 01122 89999988875 677
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccCCCCcc----eeecccccc-CCCc
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPD----MVILGKALG-GGVI 300 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~~~~pd----i~s~sK~l~-gG~~ 300 (470)
++++..++||||.++ +++.+++|.++|++||++||+||+|..|...+... ........++ +.||||.++ +|+
T Consensus 162 ~i~~~~P~NPtG~~~-s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl- 239 (388)
T d1gdea_ 162 ALIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW- 239 (388)
T ss_dssp EEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG-
T ss_pred EEEECCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccc-
Confidence 777444499999999 99999999999999999999999999875554322 1222221222 349999998 898
Q ss_pred ceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 301 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
|+||+++++++++.+.........+.+.+.+.++.++++.-.. ....+++++....+.+.|... .+....
T Consensus 240 R~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~ 313 (388)
T d1gdea_ 240 RLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM------GLPTVK 313 (388)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCCCC
T ss_pred cEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc------cccccC
Confidence 9999999999888776555555666677776666655532111 223333344444444444332 233345
Q ss_pred ccceeEEE-EeccCCCchhHHHHHHHHHH-cCceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 377 GRGLFNAV-EFDKTALPVSAYDICLKMKE-RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 377 ~~g~~~~~-~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+.|.++.| .+... +.++.+++++|.+ .||.+.|+ .++++|++ +..++|++++++++|+++++ +.+
T Consensus 314 p~gg~fl~~~l~~~--~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis--~~~~~e~l~~al~rL~~~l~-e~k 386 (388)
T d1gdea_ 314 PKGAFYIFPRIRDT--GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRIS--YATAYEKLEEAMDRMERVLK-ERK 386 (388)
T ss_dssp CCBTTEECCBCGGG--TCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHH-HTT
T ss_pred CCceEEEEEECCCC--CCCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHH-hcC
Confidence 56555544 44322 2367888888765 59999876 26899999 55789999999999999999 764
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.97 E-value=1.2e-29 Score=250.93 Aligned_cols=343 Identities=14% Similarity=0.122 Sum_probs=221.0
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETA 148 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~a 148 (470)
.|+.+|||..|. +....+|.|++++.++++...+.+.....++++.+++++.+.+| .++|++|+|+++|+..+
T Consensus 29 ~g~~vi~l~~g~---pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~ 105 (394)
T d1c7na_ 29 VGNEVVPLSVAD---MEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNA 105 (394)
T ss_dssp CCTTCCCCCSSS---CSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred cCCCeEEccCCC---CCCCCCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhh
Confidence 467888988774 44458899999999999874332222234566777777776654 46799999999999999
Q ss_pred HHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEE
Q 012138 149 LKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGF 228 (470)
Q Consensus 149 l~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~v 228 (470)
++++.. +|+ .|++..+.|................ ..... ......+ |.+.++.++.. .+++++
T Consensus 106 ~~~~~~---------pgd-~vi~~~p~~~~~~~~~~~~g~~~v~-~~~~~-~~~~~~~---d~~~~~~~~~~--~~~~~i 168 (394)
T d1c7na_ 106 VREFTK---------PGD-GVIIITPVYYPFFMAIKNQERKIIE-CELLE-KDGYYTI---DFQKLEKLSKD--KNNKAL 168 (394)
T ss_dssp HHHHCC---------TTC-EEEECSSCCTHHHHHHHTTTCEEEE-CCCEE-ETTEEEC---CHHHHHHHHTC--TTEEEE
T ss_pred hccccc---------ccc-ccccccCcccchhhHHhhhhhcccc-ccccc-ccccccc---hhhhhhhhhcc--ccceEE
Confidence 998765 566 6777888876554433332221110 00000 0011222 77888877754 268888
Q ss_pred EEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc-ccC-----CCCcceeecccccc-CCCcc
Q 012138 229 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS-DWE-----EVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 229 i~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~-~~~-----~~~pdi~s~sK~l~-gG~~~ 301 (470)
++..++||||.++ +.+.+++|+++|++||++||+||+|..+.+.+..... ... .....+.++||.++ +|+ |
T Consensus 169 ~l~~P~NPTG~v~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-R 246 (394)
T d1c7na_ 169 LFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGM-G 246 (394)
T ss_dssp EEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG-C
T ss_pred Eecccccccceec-cHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccc-c
Confidence 8555599999999 9999999999999999999999999987655533211 100 11112348899998 898 9
Q ss_pred eeEEEec-HHHHhhcCcCCccCCCC-CCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Q 012138 302 VSAVLAD-KEVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 377 (470)
Q Consensus 302 ig~v~~~-~~~~~~~~~~~~~~t~~-~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~ 377 (470)
+|+++++ +.+.+.+.......... ......+++........+ +.+.+..++..+.+.+.++... + .+....+
T Consensus 247 ~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~-~~~~~~p 322 (394)
T d1c7na_ 247 MSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNH---P-EIKAPLI 322 (394)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC---T-TSBCCCC
T ss_pred cccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccc---c-ceeecCC
Confidence 9998865 45555554322222222 233333333333332211 3344444444555555444322 1 3444456
Q ss_pred cceeEEE-EeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 378 RGLFNAV-EFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 378 ~g~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+|.++.| .+... +.++.+++++|+++ ||.+.|+ +.+++||+ +..++|+|++++++|+++++ +++
T Consensus 323 ~g~~~~~~~~~~~--~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~-~Lk 394 (394)
T d1c7na_ 323 EGTYLQWIDFRAL--KMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALK-DLK 394 (394)
T ss_dssp SBSSEEEEECGGG--CCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHH-HHC
T ss_pred CceeEEEEECCCC--CCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHH-hcC
Confidence 6666655 33321 24788899998877 9999875 36899999 56789999999999999998 764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=7.1e-29 Score=245.26 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=222.4
Q ss_pred CCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhCC----CeEEecCChhHHH
Q 012138 72 PEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGV 145 (470)
Q Consensus 72 ~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~----~~v~~~~sGteA~ 145 (470)
.+|+.+||+..|-+.......++.+++++.++++.... .+.....++++.+++++.+.+|. +++++++|+++++
T Consensus 27 ~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~ 106 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEAL 106 (395)
T ss_dssp HTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred HCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhh
Confidence 35888999998865444455788999999999876432 12222445677788888777653 5799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..+++.+.. +|+ .|++.+|+|+.........+..... .+... .+.... |++++++.+.+ ++
T Consensus 107 ~~~~~~~~~---------~Gd-~vlv~~P~y~~~~~~~~~~g~~~v~-v~~~~--~~~~~~---d~~~~~~~~~~---~~ 167 (395)
T d1xi9a_ 107 QLIFGALLD---------PGD-EILVPGPSYPPYTGLVKFYGGKPVE-YRTIE--EEDWQP---DIDDIRKKITD---RT 167 (395)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHHTTCEEEE-EEEEG--GGTSEE---CHHHHHHHCCT---TE
T ss_pred hhhhhhhcC---------CCC-EEEEcCCccccchhhhhhcCCEEEE-Eeccc--cccccc---hHHHHHHhhcc---cc
Confidence 999887764 455 7889999997654444333321110 00000 001122 78888888765 67
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc---ccCCCCcceeecccccc-CCCc
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS---DWEEVRPDMVILGKALG-GGVI 300 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~---~~~~~~pdi~s~sK~l~-gG~~ 300 (470)
++++ ++| +||||.++ +.+.+++|.++|++||+++|.||+|..+.+.+..... ....-..-+.||||.++ +|+
T Consensus 168 ~~v~l~~P-~NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~Gl- 244 (395)
T d1xi9a_ 168 KAIAVINP-NNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW- 244 (395)
T ss_dssp EEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG-
T ss_pred cEEEecCC-CCCccchh-hHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchh-
Confidence 7777 555 99999999 9999999999999999999999999976555433221 11111112348999998 798
Q ss_pred ceeEEEec--HHHHhhcC---cCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 301 PVSAVLAD--KEVMLCIQ---PGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 301 ~ig~v~~~--~~~~~~~~---~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
|+||++.. +..+..+. .......+..+.+++.++..+++..++ ++.++.++++.+.+.+.|+++ + .+.
T Consensus 245 RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~~~ 319 (395)
T d1xi9a_ 245 RLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----P-GIS 319 (395)
T ss_dssp CCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----T-TEE
T ss_pred hcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhC----C-Cce
Confidence 99997742 22111111 111223344556666666665542211 334555666666666666553 2 344
Q ss_pred EEeccceeE-EEEeccCCCchhHHHHHHHHHH-cCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 374 EVRGRGLFN-AVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 374 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
...++|.++ +++++... ..+..+++++|.+ .||.+.|+. .+++||+ +..++|++++++++|.++++
T Consensus 320 ~~~p~gg~~~~~~l~~~~-~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~ 393 (395)
T d1xi9a_ 320 TTKPQGAFYIFPKIEVGP-WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMK 393 (395)
T ss_dssp CCCCCBSSEECCEECSCS-CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEeEECCCCC-CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence 445665554 44554321 1256677777664 599998762 6889999 56789999999999999997
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.96 E-value=1.1e-27 Score=238.63 Aligned_cols=336 Identities=12% Similarity=0.132 Sum_probs=226.9
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHcc-----ccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChhHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT-----LSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGteA~~ 146 (470)
.||+..|. +....++.+.+++.++++... +.+..+..++++.+++++.+.+| .++|++|+|+++|+.
T Consensus 28 ~I~L~~G~---Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~ 104 (418)
T d2r5ea1 28 PLNLGQGF---PDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 104 (418)
T ss_dssp CEECSSSC---CSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CEEccCCC---CCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence 47888774 444467889999999986542 22222234567888888887764 357999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--C----CeeeecCCCHHHHHHHHHh
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--P----GHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~d~~~Le~~l~~ 220 (470)
.+++.+.. +|+ .|++.+|+|................ .+..+.. . ..... +++.+++....
T Consensus 105 ~~~~~l~~---------~gd-~vlv~~P~y~~~~~~~~~~g~~~~~-v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 170 (418)
T d2r5ea1 105 ATIQGHVD---------EGD-EVIIIEPFFDCYEPMVKAAGGIPRF-IPLKPNKTGGTISSADWVL---DNNELEALFNE 170 (418)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEEEE-EECEESCCSSCEEGGGEEC---CHHHHHHHCCT
T ss_pred hhhhhccc---------ccc-ceeccccccchhhHHHHHcCCeEEE-EEecccccccchhhhhhhh---hHHHHhhhhhc
Confidence 99998765 455 8889999987654443333222110 0000000 0 00111 67777666544
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c-cccCCCCcc---eeeccccc
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A-SDWEEVRPD---MVILGKAL 295 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~-~~~~~~~pd---i~s~sK~l 295 (470)
+++++++.+.+||||.++ +.+.+++|.++|++||++||+||+|..+...+... . ....+.... +.++||.+
T Consensus 171 ---~~~~~~i~~p~NPtG~~~-s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~ 246 (418)
T d2r5ea1 171 ---KTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF 246 (418)
T ss_dssp ---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred ---cccceecCCcCccccccc-cHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccc
Confidence 788888666699999999 99999999999999999999999999775544321 1 111222222 34899999
Q ss_pred c-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh----h-----hhHHHHHHHHHHHHHHHHHHHH
Q 012138 296 G-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR----D-----EKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 296 ~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~----~-----~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
+ +|+ |+||+++++++++.+.......+++.+.+.+.++...+.... . ..++++++.+++.+.+.|+++
T Consensus 247 ~~pGl-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~- 324 (418)
T d2r5ea1 247 SLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV- 324 (418)
T ss_dssp TCGGG-CCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCCCc-ccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-
Confidence 8 898 999999999998887655555566666666665555443211 1 234455566666676666663
Q ss_pred hhCCCceEEEeccceeEEE-EeccCC---------CchhHHHHHHHHHHc-CceeccCC-----------CCEEEEecCC
Q 012138 366 QQFPNYVKEVRGRGLFNAV-EFDKTA---------LPVSAYDICLKMKER-GILAKPTH-----------DTIVRLTPPL 423 (470)
Q Consensus 366 ~~~p~~~~~~~~~g~~~~~-~~~~~~---------~~~~~~~~~~~l~~~-Gv~~~~~~-----------~~~iR~~~~~ 423 (470)
.+....++|.|+.| .+.... ...+..+++++|.++ ||.+.|+. .+++|++ +
T Consensus 325 -----g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis--~ 397 (418)
T d2r5ea1 325 -----GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYC--F 397 (418)
T ss_dssp -----TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEE--C
T ss_pred -----CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEE--e
Confidence 24556677766665 332110 023677899988766 99998862 4789999 5
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 012138 424 SISSNELQEGSKALHDVLE 442 (470)
Q Consensus 424 ~~t~e~i~~~~~~l~~~l~ 442 (470)
..++|++++++++|++++.
T Consensus 398 ~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 398 FKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp CSCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHc
Confidence 6789999999999999885
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.2e-27 Score=233.63 Aligned_cols=338 Identities=12% Similarity=0.063 Sum_probs=212.2
Q ss_pred EeccCCcccccCCCCCHHHHHHHHHHHHHccccCC-CCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHHHHHHH
Q 012138 78 LDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~al~~~ 152 (470)
|+|..| .+....+|.|.+++.+.++...+.+. ....++++.+++++.+.+| .++|++|+|+++++..++..+
T Consensus 2 ~~~~~~---~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l 78 (361)
T d1d2fa_ 2 LPFTIS---DMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW 78 (361)
T ss_dssp EECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS
T ss_pred cCcCCC---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc
Confidence 566665 44455889999999998865332211 1113456777777777665 367999999999999988877
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.. +|+ .|++.+|+|.+....... .+........ ....+.... |++.+++.+.+. +++++++..
T Consensus 79 ~~---------~gd-~Vlv~~P~y~~~~~~~~~-~g~~~~~v~~-~~~~~~~~~---d~~~~~~~~~~~--~~~~i~l~~ 141 (361)
T d1d2fa_ 79 SE---------TGE-GVVIHTPAYDAFYKAIEG-NQRTVMPVAL-EKQADGWFC---DMGKLEAVLAKP--ECKIMLLCS 141 (361)
T ss_dssp SC---------TTC-EEEEEESCCHHHHHHHHH-TTCEEEEEEC-EECSSSEEC---CHHHHHHHHTST--TEEEEEEES
T ss_pred cc---------ccc-ccccccccccchhHHHHh-hcceEEeecc-ccccccccc---ccccchhhcccC--CceeEEecc
Confidence 54 566 788889998554332222 1111100000 000111222 899999988663 788888655
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc-cccCCC--Ccceeecccccc-CCCcceeEEEec
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA-SDWEEV--RPDMVILGKALG-GGVIPVSAVLAD 308 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~-~~~~~~--~pdi~s~sK~l~-gG~~~ig~v~~~ 308 (470)
++||||.++ +.+.+++|.++|++||++||+||+|.+|.+.+.... ...... ..-+.++||+++ +|+ |+||++..
T Consensus 142 p~NPTG~~~-s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~-R~g~~~~~ 219 (361)
T d1d2fa_ 142 PQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPAL-TGAYGIIE 219 (361)
T ss_dssp SCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGG-CCEEEEEC
T ss_pred ccccccccc-chhhhhhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccc-cceeeecc
Confidence 699999999 999999999999999999999999998755543321 111111 112347889887 788 99998754
Q ss_pred -HHHHhhc-CcC-CccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEE
Q 012138 309 -KEVMLCI-QPG-EHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA 383 (470)
Q Consensus 309 -~~~~~~~-~~~-~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~ 383 (470)
+...+.. ... ......+.+..+++++..+++.... +..+...+++.+.+.+.+.+.. + .+....++|.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~-~~~~~~p~gg~~~ 295 (361)
T d1d2fa_ 220 NSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAF---P-ELNWQIPQSTYLA 295 (361)
T ss_dssp SHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC---S-SCCCCCCSBCSEE
T ss_pred hhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhc---c-cccccccCceeEE
Confidence 2222222 111 1112223444555555444443221 2344444444444444444332 1 2333445655554
Q ss_pred -EEeccCCCchhHHHHHHHHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 384 -VEFDKTALPVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
+++... +.++.+++++|+++ ||.+.|+ +.+++|++ +..++|++++++++|.++++ +++
T Consensus 296 ~~~l~~~--~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis--~~~~~e~l~~al~rl~~~l~-~lr 361 (361)
T d1d2fa_ 296 WLDLRPL--NIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN--AGCPRSKLEKGVAGLINAIR-AVR 361 (361)
T ss_dssp EEECGGG--CCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHH-HHC
T ss_pred EEEccCC--CCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHH-hcC
Confidence 444322 23788999998776 9999875 36789999 45789999999999999998 764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=9.6e-28 Score=235.57 Aligned_cols=331 Identities=16% Similarity=0.192 Sum_probs=219.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVE 146 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~ 146 (470)
.|+.+|||..|.+.. ..++.+++++.+.+....+ ++.....++++++++++.+..+ .+++++|+|+++|+.
T Consensus 26 ~G~~vI~l~~G~p~~---~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~ 102 (375)
T d1o4sa_ 26 KGEDVINLTAGEPDF---PTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 102 (375)
T ss_dssp TTCCCEECCCSSCSS---CCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCcCCCC---CCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence 466788998885432 2678999999998865332 2222345666777777766554 467999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
.+++++.. +|+ .|++.+|+|............. .... +... +... .|.+.++..... ++
T Consensus 103 ~~~~~l~~---------~gd-~vlv~~P~y~~~~~~~~~~~~~-~~~~---~~~~~~~~~---~~~~~~~~~~~~---~~ 162 (375)
T d1o4sa_ 103 NAFMALLD---------PGD-EVIVFSPVWVSYIPQIILAGGT-VNVV---ETFMSKNFQ---PSLEEVEGLLVG---KT 162 (375)
T ss_dssp HHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCE-EEEE---ECCGGGTTC---CCHHHHHHTCCT---TE
T ss_pred HHHHHHhC---------CCC-EEEEccCccccchhhhhccccc-cccc---ccccccccc---chhHHHHHhhcc---Cc
Confidence 99998764 455 7888888886544333222211 1000 0000 0011 156666655444 67
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc----cccCCCCcceeecccccc-CCC
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA----SDWEEVRPDMVILGKALG-GGV 299 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~----~~~~~~~pdi~s~sK~l~-gG~ 299 (470)
++++ ++| +||||.++ +.+.+++|.++|++|+++||+||+|..+...+.... .+.++...-+.+|||.++ +|+
T Consensus 163 ~~~~l~nP-~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~ 240 (375)
T d1o4sa_ 163 KAVLINSP-NNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW 240 (375)
T ss_dssp EEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred cEEEEeCC-CCCccCCC-CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcc
Confidence 7777 555 99999999 999999999999999999999999986644433221 112222223459999998 899
Q ss_pred cceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc
Q 012138 300 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g 379 (470)
|+||+++++++++.+.......+..........+...++.. .....+.++++.+.+.+.|++.+ +....+.|
T Consensus 241 -R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~l~~~g------~~~~~p~g 312 (375)
T d1o4sa_ 241 -RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKMG------VKFVEPEG 312 (375)
T ss_dssp -CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHTT------CCCCCCSB
T ss_pred -ccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHHHHHhcC------ceEecCCc
Confidence 99999999998887765444444444555544443322211 13455666777777777776642 33445666
Q ss_pred eeEEEEeccCCCchhHHHHHHHHH-HcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 380 LFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.++.| ++.+. +..+++.+|+ ++||++.|+. ++++||+ +..++|++++++++|+++++
T Consensus 313 g~f~~-~~~~~---~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis--~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 313 AFYLF-FKVRG---DDVKFCERLLEEKKVALVPGSAFLKPGFVRLS--FATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp SSEEE-EECSS---CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred cEEEE-EECCC---CHHHHHHHHHHhCCEEEEEccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence 66555 33222 4556666655 5699998863 7899999 55789999999999999986
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.96 E-value=2.1e-27 Score=235.39 Aligned_cols=335 Identities=14% Similarity=0.143 Sum_probs=217.8
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHc-----cccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-----TLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGV 145 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~ 145 (470)
..+|||..|.+.... .+.+.+.+++.+.++.. .++...+..++++.+++++.+.+| .++|++|+|+++++
T Consensus 29 ~~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al 107 (403)
T d1wsta1 29 SDVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQAL 107 (403)
T ss_dssp SSCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHH
T ss_pred CCcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHH
Confidence 346788777543321 13456777777766542 233333345667788888877654 57899999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----CHHH----HHHH
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----DITA----LEKI 217 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~----Le~~ 217 (470)
..+++++.. +|+ .|++.+|+|............. ...++.+ +... .++.
T Consensus 108 ~~~~~~l~~---------~gd-~v~~~~P~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~~~~~~~~~~ 164 (403)
T d1wsta1 108 DLIGRVFLN---------PGD-PIVVEAPTYLAAIQAFKYYDPE-------------FISIPLDDKGMRVDLLEEKLEEL 164 (403)
T ss_dssp HHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHH
T ss_pred HHHHHHHhh---------cCC-ccccCCCcchhhhHHHhhcccc-------------ceeEeecccCCccccccccchhh
Confidence 999987754 455 7888999986654443322221 1222211 2222 2233
Q ss_pred HHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc----cccCCCCcceeeccc
Q 012138 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA----SDWEEVRPDMVILGK 293 (470)
Q Consensus 218 l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~----~~~~~~~pdi~s~sK 293 (470)
.......+.++++..++||||.++ +.+.+++|.++|++||++||+||+|..+.+.+.... .+.++...-+.++||
T Consensus 165 ~~~~~~~~~~~~~~~p~NPtG~~~-s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK 243 (403)
T d1wsta1 165 RKQGKRVKIVYTVSTFQNPAGVTM-SVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSK 243 (403)
T ss_dssp HHTTCCCCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTT
T ss_pred hhccccccccccccccCCCCCccC-CHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccc
Confidence 333223445555444599999999 999999999999999999999999998866654321 122222233459999
Q ss_pred cccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 294 ALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 294 ~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
.+++|+ |+||+++++++++.+...........+...+.+..+.+..... ..+++.++...+.+.+.|.+. .+
T Consensus 244 ~~~~G~-RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---~~ 319 (403)
T d1wsta1 244 ILAPGF-RIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEY---MP 319 (403)
T ss_dssp TTCGGG-CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_pred eecCcc-cccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhh---cc
Confidence 999998 9999999999988775443334445566665555444443222 234444444555555555443 22
Q ss_pred CceEEEeccceeEEE-EeccCCCchhHHHHHHHHHHcCceeccCC--------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 370 NYVKEVRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH--------DTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
..+....+.|.++.| .++.. .+...+++.|.++||.+.|+. .+++||+++. .+++++++++++|.++
T Consensus 320 ~~~~~~~p~gg~~~~~~~~~~---~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~ 395 (403)
T d1wsta1 320 EGVEWTKPEGGMFVRVTLPEG---IDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAET 395 (403)
T ss_dssp TTCEECCCSBSSEEEEECCTT---CCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHH
T ss_pred CCeEEeCCCceeEEEEECCCC---CCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 245555556555554 44432 366789999999999998752 5799999543 5899999999999999
Q ss_pred Hh
Q 012138 441 LE 442 (470)
Q Consensus 441 l~ 442 (470)
++
T Consensus 396 l~ 397 (403)
T d1wsta1 396 IK 397 (403)
T ss_dssp HH
T ss_pred HH
Confidence 98
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=5.3e-28 Score=241.07 Aligned_cols=343 Identities=17% Similarity=0.160 Sum_probs=230.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHc-----cccCCCCCCCcHHHHHHHHhhhhC-----CCeEEecCChh
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKL-----TLSSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGA 142 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~-----~~~v~~~~sGt 142 (470)
.++.+|||..|.+..... +.+.+.+++.+.++.. .+.+..+..++++.+++++.+.+| .++|++|+|++
T Consensus 36 ~~~~~I~l~~G~Pd~~~~-P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPETF-PRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSCCGGGS-CHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCCCCccC-CHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 456789998885432221 3355667776666543 222333345667788888877654 35799999999
Q ss_pred HHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC----CHHHHHHHH
Q 012138 143 EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----DITALEKIF 218 (470)
Q Consensus 143 eA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~Le~~l 218 (470)
+|+..++.++.. +|+ .|++.+|+|............. ...++.+ |++.++..+
T Consensus 115 ~al~~~~~~~~~---------~Gd-~Vlv~~P~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~l~~~~ 171 (420)
T d1vp4a_ 115 QALDLIGKLFLD---------DES-YCVLDDPAYLGAINAFRQYLAN-------------FVVVPLEDDGMDLNVLERKL 171 (420)
T ss_dssp HHHHHHHHHHCC---------TTC-EEEEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHHH
T ss_pred hhHHHHHHhhhc---------ccc-ccccccccccchhHHHHHHhhh-------------cccccccccccccchhhhhh
Confidence 999999887654 455 7888999986554333222211 1122211 677776655
Q ss_pred Hhc-----CCCe-EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc----cccCCCCcce
Q 012138 219 KES-----GDQI-AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA----SDWEEVRPDM 288 (470)
Q Consensus 219 ~~~-----~~~~-~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~----~~~~~~~pdi 288 (470)
.+. ..++ +++++.+.+||||.++ +.+.+++|.++|++|++++|+||+|..+.+.+.... ....+...-+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~ 250 (420)
T d1vp4a_ 172 SEFDKNGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL 250 (420)
T ss_dssp HHHHHTTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEE
T ss_pred hhhHHHhhccccceeeEecCCCCccchhh-hhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEE
Confidence 431 1233 4444655699999999 999999999999999999999999998766654321 1112222223
Q ss_pred eeccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHHHHHH
Q 012138 289 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--D--EKLAERSAHLGEELRQHLFKI 364 (470)
Q Consensus 289 ~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~--~--~~~~~~~~~~~~~l~~~L~~l 364 (470)
.+++|.+.+|+ |+||+++++++++.+.........+.+.+.++++...++... + .+..+.+++..+.+.+.|++.
T Consensus 251 ~s~sk~~~~G~-RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 329 (420)
T d1vp4a_ 251 NTFSKVLAPGL-RIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY 329 (420)
T ss_dssp EESTTTTCGGG-CEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccccc-ccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhh
Confidence 47788888998 999999999999888654444445566777666665554321 1 345566667777777777776
Q ss_pred HhhCCCceEEEeccceeEEE-EeccCCCchhHHHHHHHHHHcCceeccCC--------CCEEEEecCCCCCHHHHHHHHH
Q 012138 365 QQQFPNYVKEVRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH--------DTIVRLTPPLSISSNELQEGSK 435 (470)
Q Consensus 365 ~~~~p~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------~~~iR~~~~~~~t~e~i~~~~~ 435 (470)
....| .+....+.|.++.| .+... .++.++++.|+++||.+.|+. .+++||+++ ..++|+++++++
T Consensus 330 ~~~~~-g~~~~~p~gg~f~~~~~~~~---~d~~~~~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~ 404 (420)
T d1vp4a_ 330 FSDIP-GVKWVKSEGGLFIWLTLPEG---FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIK 404 (420)
T ss_dssp STTST-TCEECCCSBSSEEEEECCTT---CCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHH
T ss_pred hccCC-CcEEecCCceEEEEEECCCC---CCHHHHHHHHHHCCeEEEechhhCCCCCCCCEEEEEeC-cCCHHHHHHHHH
Confidence 55443 45666677665555 44332 356778899999999998762 569999953 368899999999
Q ss_pred HHHHHHhcccCC
Q 012138 436 ALHDVLELDLPK 447 (470)
Q Consensus 436 ~l~~~l~~~~~~ 447 (470)
+|+++++ +..+
T Consensus 405 rL~~~l~-~~~~ 415 (420)
T d1vp4a_ 405 RLREVVL-EYGK 415 (420)
T ss_dssp HHHHHHH-HHHH
T ss_pred HHHHHHH-HhhH
Confidence 9999998 7654
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.4e-27 Score=233.47 Aligned_cols=339 Identities=14% Similarity=0.151 Sum_probs=225.1
Q ss_pred CCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc----ccCCCCCCCcHHHHHHHHhhhhCC-----CeEEecCChhHH
Q 012138 74 GNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT----LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEG 144 (470)
Q Consensus 74 G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~-----~~v~~~~sGteA 144 (470)
+..+||+..|.+. ...++.+.+++.++++... +.+.....++++.+++++.+.+|. ++|++|+|+++|
T Consensus 24 ~~dvI~l~~G~p~---~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a 100 (418)
T d1w7la_ 24 EHDVVNLGQGFPD---FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100 (418)
T ss_dssp TSCCEECCCCSCS---SCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCCCEECCCCCCC---CCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence 4457899888543 3367889999998886421 222223445677788888776653 369999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC--------CCeeeecCCCHHHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGDITALEK 216 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~Le~ 216 (470)
+..+++++.. +|+ .|++..++|+............... ....+.. ...... |.+++..
T Consensus 101 l~~~~~~l~~---------~g~-~vlv~~p~~~~y~~~~~~~g~~~v~-~~~~~~~~~~~~~~~~~~~~~---d~~~~~~ 166 (418)
T d1w7la_ 101 LFTAFQALVD---------EGD-EVIIIEPFFDCYEPMTMMAGGRPVF-VSLKPGPIQNGELGSSSNWQL---DPMELAG 166 (418)
T ss_dssp HHHHHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEEEE-EECEECC---CCSEEGGGEEC---CHHHHHH
T ss_pred HHHHHHhhcc---------CCc-eeeccccccchhHHHHHHcCCEeec-cccccccccccccccccCccc---chhhhhc
Confidence 9999988765 454 8888888887665443333322111 0000000 000111 4555554
Q ss_pred HHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-cc-ccCCCCc---ceeec
Q 012138 217 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-AS-DWEEVRP---DMVIL 291 (470)
Q Consensus 217 ~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~-~~~~~~p---di~s~ 291 (470)
... ..++++++...+||||.++ +.+.+++|.++|++|++++|+||+|.++.+.+... .. +..+..+ -+.++
T Consensus 167 ~~~---~~~~~i~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~ 242 (418)
T d1w7la_ 167 KFT---SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSA 242 (418)
T ss_dssp HCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEH
T ss_pred ccc---ccccceeccCcCCcccccc-cHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceeccc
Confidence 443 3677777555599999999 99999999999999999999999999887665432 11 1112222 23489
Q ss_pred ccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHHH
Q 012138 292 GKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---------EKLAERSAHLGEELRQHL 361 (470)
Q Consensus 292 sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---------~~~~~~~~~~~~~l~~~L 361 (470)
||.++ +|+ |+||+++++++++.+.......+++.+.+.+.++..++..-.. ..+++.++++++.+.+.|
T Consensus 243 SK~~~~pG~-RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 321 (418)
T d1w7la_ 243 GKTFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSL 321 (418)
T ss_dssp HHHTTCGGG-CCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCC-cccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Confidence 99987 898 9999999999988877655556677778877777766654221 234445555555566655
Q ss_pred HHHHhhCCCceEEEeccceeEEE-Eecc--------CC-C-chhHHHHHHHHHHc-CceeccCC-----------CCEEE
Q 012138 362 FKIQQQFPNYVKEVRGRGLFNAV-EFDK--------TA-L-PVSAYDICLKMKER-GILAKPTH-----------DTIVR 418 (470)
Q Consensus 362 ~~l~~~~p~~~~~~~~~g~~~~~-~~~~--------~~-~-~~~~~~~~~~l~~~-Gv~~~~~~-----------~~~iR 418 (470)
+++ .+....++|.++.| .+.. .. . .....+++++|+++ ||.+.|+. .+++|
T Consensus 322 ~~~------g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iR 395 (418)
T d1w7la_ 322 QSV------GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIR 395 (418)
T ss_dssp HTT------TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEE
T ss_pred hhc------CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEE
Confidence 543 35556677776666 3321 00 0 12467788887655 99998752 57999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHh
Q 012138 419 LTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|+ +..+++++++++++|++...
T Consensus 396 is--~~~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 396 FC--FVKDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp EE--CCCCHHHHHHHHHHHHHHHC
T ss_pred EE--EcCCHHHHHHHHHHHHHHhc
Confidence 99 56799999999999998765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2e-27 Score=232.65 Aligned_cols=322 Identities=18% Similarity=0.208 Sum_probs=216.5
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCC-CcHHHHHHHHhhhhC--CCeEEecCChhHHHHHHHHHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYN-DKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLAR 153 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~~~v~~~~sGteA~~~al~~~~ 153 (470)
.||++.|.+. ...+|.+++++.+.++.... |.. .-..+|.+.++++++ .++|++|+|+++|+..+++.+.
T Consensus 27 ~I~ls~g~p~---~~~p~~i~~al~~~l~~~~~----Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~ 99 (368)
T d1v2da_ 27 AVNLGQGFPS---NPPPPFLLEAVRRALGRQDQ----YAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (368)
T ss_dssp CEECCCCSCS---SCCCHHHHHHHHHHTTTSCS----CCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CEEecCCCCC---CCCCHHHHHHHHHHhhcccC----CCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence 4788777443 33789999999998765322 222 124677777777776 4679999999999999998775
Q ss_pred HhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEE-Ecc
Q 012138 154 KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FEP 232 (470)
Q Consensus 154 ~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi-~ep 232 (470)
. ++ +.|++..|+|+................ . .+...+...+ |++++++++++ .+++++ ++|
T Consensus 100 ~---------~~-d~v~~~~p~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~~---d~~~l~~~~~~---~~~~i~~~~p 161 (368)
T d1v2da_ 100 G---------PG-DEVVVLEPFFDVYLPDAFLAGAKARLV-R-LDLTPEGFRL---DLSALEKALTP---RTRALLLNTP 161 (368)
T ss_dssp C---------TT-CEEEEEESCCTTHHHHHHHTTCEEEEE-E-CEEETTEEEC---CHHHHHTTCCT---TEEEEEEESS
T ss_pred c---------cc-ccccccCCcchhhhhHHHhcCCcccee-c-cccccccccC---CHHHHHHhhcc---CceEEEEcCC
Confidence 4 34 488888888865544333322211100 0 0000112233 89999988876 666666 555
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccc--cCCCCcceeecccccc-CCCcceeEEEecH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD--WEEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~--~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
+||||.++ +.+.+++|.++|++||+++|+||+|..+.......... ..+..-.+.++||.++ +|+ |+|++++++
T Consensus 162 -~NPtG~~~-~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~-R~g~~~~~~ 238 (368)
T d1v2da_ 162 -MNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGY-RVGWIVGPK 238 (368)
T ss_dssp -CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGG-CCEEEECCT
T ss_pred -CCcccccC-CHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccccc-ccccccccc
Confidence 99999999 99999999999999999999999998543333222111 1111123458888776 788 999999999
Q ss_pred HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE-
Q 012138 310 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV- 384 (470)
Q Consensus 310 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~----~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~- 384 (470)
++++.+........++.+.+.+.++.+++..... +.+++.++++.+++.+.|+++ .+....+.|.++.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------g~~~~~p~g~~~~~~ 312 (368)
T d1v2da_ 239 EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM------GLRVYVPEGTYFLMA 312 (368)
T ss_dssp TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT------TCCEECCSBSSEEEE
T ss_pred cccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc------CcEEecCCceeEEEE
Confidence 9888776655555667777777777666665443 334444566666666666653 24455667655555
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.++ . .+. .+.|.++||.+.|+ ..+++||+ +..++|++++++++|+++|
T Consensus 313 ~l~--~--~~~---~~ll~~~gI~v~pg~~F~~~~~~~~~iRis--~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 313 ELP--G--WDA---FRLVEEARVALIPASAFYLEDPPKDLFRFA--FCKTEEELHLALERLGRVV 368 (368)
T ss_dssp ECT--T--CCH---HHHHHHTCEECEEGGGGCSSSCCTTEEEEE--CCSCHHHHHHHHHHHHHHC
T ss_pred eCC--c--cHH---HHHHHhCCEEEEechhhCCCCCCCCEEEEE--ecCCHHHHHHHHHHHHHhC
Confidence 333 2 133 34567789999875 25899999 5678999999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=6.7e-28 Score=237.91 Aligned_cols=334 Identities=12% Similarity=0.093 Sum_probs=213.6
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcccc-CCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLS-SRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
.|+.+||+..|.+. ...++.+.+++.+.......+ +..+..++++.+++++.+..| .++|++|+|+++++..
T Consensus 26 ~g~~vi~l~~G~p~---~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~ 102 (389)
T d2gb3a1 26 RGVRIHHLNIGQPD---LKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF 102 (389)
T ss_dssp TTCEEEECSSCCCC---SCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred cCCCEEECCCCCCC---CCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccc
Confidence 47788899888443 336788888887654332222 122234567778888877654 4689999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++++.. +|+ .|++..|+|................ . +...+.... +.+.+...+. +++++
T Consensus 103 ~~~~l~~---------~gd-~V~i~~P~y~~~~~~~~~~g~~~~~-~---~~~~~~~~~---~~~~~~~~~~---~~~~~ 162 (389)
T d2gb3a1 103 SFAVIAN---------PGD-EILVLEPFYANYNAFAKIAGVKLIP-V---TRRMEEGFA---IPQNLESFIN---ERTKG 162 (389)
T ss_dssp HHHHHCC---------TTC-EEEEEESCCTHHHHHHHHHTCEEEE-E---ECCGGGTSC---CCTTGGGGCC---TTEEE
T ss_pred ccccccc---------CCC-eEEEeCCCCccccccccccCccccc-c---ccccccccc---hhhhhhhhcc---cCccE
Confidence 9987764 455 7888999985543333222211100 0 000000000 2222333222 37787
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcc--eeecccccc-CCCcceeE
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD--MVILGKALG-GGVIPVSA 304 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pd--i~s~sK~l~-gG~~~ig~ 304 (470)
+++..++||||.++ +.+.+++|.++|++||++||+||+|..+...+............. +.++||.++ +|+ |+||
T Consensus 163 ~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~Gl-RiG~ 240 (389)
T d2gb3a1 163 IVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGA-RVGC 240 (389)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGG-CCEE
T ss_pred EEeCCCCccccccc-hHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCccc-ceee
Confidence 77555599999999 999999999999999999999999998876665432222211112 337788877 798 9999
Q ss_pred EEecHH-HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-
Q 012138 305 VLADKE-VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL- 380 (470)
Q Consensus 305 v~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~- 380 (470)
++++.+ +...+.. ...+.++.+++.+.++.+.+...++ +.+++..+++++.+.+.|++++ ......+.|.
T Consensus 241 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-----~~~~~~p~~g~ 314 (389)
T d2gb3a1 241 LITRNEELISHAMK-LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG-----LKRFTKPSGAF 314 (389)
T ss_dssp EECSCHHHHHHHHH-HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCBCCCSBSS
T ss_pred eeccchhHHHHHhh-hhhccccccccccccccccccccchhcccccccccccchhhhhhhhhhc-----cccccCCCceE
Confidence 998654 4433322 2334455667777766665542221 3455666677777777776642 2333344544
Q ss_pred eEEEEeccCCCchhHHHHHHHHHHc------CceeccC---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 381 FNAVEFDKTALPVSAYDICLKMKER------GILAKPT---------HDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~~~~~---------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
++++.++. .++.+++++|+++ ||.+.|+ +.+++||+ +..+++++++++++|.++|+ +
T Consensus 315 ~~~~~lp~----~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis--~~~~~~~l~~a~~~L~~~lk-~ 386 (389)
T d2gb3a1 315 YITAELPV----EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIA--CVLEKDLLSRAIDVLMEGLK-M 386 (389)
T ss_dssp EEEEECSS----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEE--CCSCHHHHHHHHHHHHHHHH-H
T ss_pred EEEEeCCC----CCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHH-H
Confidence 45554432 2678899988764 5666554 25799999 56899999999999999987 5
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.8e-27 Score=230.47 Aligned_cols=331 Identities=14% Similarity=0.152 Sum_probs=223.2
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccc--cCCCCCCCcHHHHHHHHhhhhC----CC-eEEecCChhHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVET 147 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~-~v~~~~sGteA~~~ 147 (470)
+.+||++.|.+. ...++.+++++.+.++...+ .+.....++++.+++++.+.+| .+ +|++|+|+++|+..
T Consensus 26 ~~~i~l~~G~Pd---~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 26 HQAINLSQGFPD---FDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TTCEECCCSSCS---SCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCCEEccCCCCC---CCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence 345888888543 33678899999998876432 2222345677888888887765 23 59999999999999
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAG 227 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~ 227 (470)
+++++.. +|+ .|++.+++|................ .+...+.... |++++++.+.+ ++++
T Consensus 103 ~~~~l~~---------~gd-~vl~~~p~y~~~~~~~~~~g~~~~~----~~~~~~~~~~---d~~~l~~~~~~---~~~~ 162 (382)
T d1u08a_ 103 AITALVR---------NGD-EVICFDPSYDSYAPAIALSGGIVKR----MALQPPHFRV---DWQEFAALLSE---RTRL 162 (382)
T ss_dssp HHHHHCC---------TTC-EEEEEESCCTTHHHHHHHTTCEEEE----EECCTTTCCC---CHHHHHHHCCT---TEEE
T ss_pred HHhhccc---------ccc-eEEEecccccchhhhhhhcccccee----cccccccccC---CHHHHhhhhcc---CccE
Confidence 9987764 455 7888889986654443333221110 0010111122 78888887766 7888
Q ss_pred EEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-ccccC----CCCcceeecccccc-CCCcc
Q 012138 228 FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWE----EVRPDMVILGKALG-GGVIP 301 (470)
Q Consensus 228 vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~~~~~----~~~pdi~s~sK~l~-gG~~~ 301 (470)
+++.+.+||+|.++ +.+.+++|.++|++++++++.||++..+...+... ..... +...-+.++||.++ +|+ |
T Consensus 163 i~l~~P~NPtG~v~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~-R 240 (382)
T d1u08a_ 163 VILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW-K 240 (382)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-C
T ss_pred EEECCCCccccccc-ccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcc-c
Confidence 77555599999999 99999999999999999999999998543333221 11101 11112458999987 898 9
Q ss_pred eeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc
Q 012138 302 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 379 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g 379 (470)
+||+++++++++.+........++.+.+.+.++..+++.-.+ ..+++.++++++.+.+.+. . ..+....++|
T Consensus 241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~g~~~~~p~g 314 (382)
T d1u08a_ 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALN----E--SRLEILPCEG 314 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTT----S--SSCEECCCCB
T ss_pred chhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhc----c--CCcEEecCCc
Confidence 999999999988876555555677888888888777764322 2344444444444433332 2 2355667777
Q ss_pred eeEEEEeccCCC-chhHHHHHHHHH-HcCceeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 380 LFNAVEFDKTAL-PVSAYDICLKMK-ERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 380 ~~~~~~~~~~~~-~~~~~~~~~~l~-~~Gv~~~~~--------~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.|+.| ++.+.. ..+..+++++|. +.||.+.|+ +.+++||+ +..++|++++++++|++
T Consensus 315 g~~~~-~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris--~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 315 TYFLL-VDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC--FAKKESTLLAAAERLRQ 381 (382)
T ss_dssp SSEEE-EECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE--CCSCHHHHHHHHHHHTT
T ss_pred eEEEE-EecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEE--EeCCHHHHHHHHHHHhC
Confidence 76666 333221 246788999876 459999875 24689999 56789999999999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.95 E-value=9.6e-27 Score=226.64 Aligned_cols=321 Identities=15% Similarity=0.157 Sum_probs=206.0
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~ 152 (470)
..+|||++|. +++| .+|.+.+++.+.+..+..++ .....+|.+.++++++. ++|++++|+++++..++...
T Consensus 22 ~~~idls~~~--np~~-~p~~~~~a~~~~~~~~~~Yp----~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~ 94 (355)
T d1lc5a_ 22 DQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERYP----DADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL 94 (355)
T ss_dssp GGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSCC----CTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH
T ss_pred hheEEccCCC--CCCC-CCHHHHHHHHHHHHHhccCC----CCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh
Confidence 3589999874 3455 57899999998877654432 22336788888888864 56999999888887766543
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEcc
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP 232 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~ep 232 (470)
.++ .+++..+.|+........... ..... ++..+. . +...+++++.+.. ++++|++..
T Consensus 95 -----------~~~-~~~v~~p~~~~~~~~~~~~~~-~~~~v---~~~~~~-~--~~~~~~~~~~~~~---~~~~v~l~n 152 (355)
T d1lc5a_ 95 -----------KPR-RAMIVTPGFAEYGRALAQSGC-EIRRW---SLREAD-G--WQLTDAILEALTP---DLDCLFLCT 152 (355)
T ss_dssp -----------CCS-EEEEEESCCTHHHHHHHHTTC-EEEEE---ECCGGG-T--TCCCTTHHHHCCT---TCCEEEEES
T ss_pred -----------ccc-cccccCCccceeccccccccc-cceee---eeeccC-C--ccceeeeeecccc---ccceeeeec
Confidence 233 333445665433222222111 11000 000000 0 0112334444443 677777555
Q ss_pred ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccccc--CCCCcceeecccccc-CCCcceeEEEecH
Q 012138 233 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW--EEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 233 i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~--~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
++||+|.++ +.+++++|.++|++|++++|+||+|..|...+....... .+...-+.||||+++ +|+ |+||++++.
T Consensus 153 P~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~Gl-R~G~~i~~~ 230 (355)
T d1lc5a_ 153 PNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL-RLGYLVNSD 230 (355)
T ss_dssp SCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT-CCEEEECCC
T ss_pred ccCcccccc-hhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccc-cccceeccc
Confidence 599999999 999999999999999999999999998765544321111 111123449999998 998 999999875
Q ss_pred H-HHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec
Q 012138 310 E-VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 387 (470)
Q Consensus 310 ~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~ 387 (470)
+ +.+.++ ....+++.+.+++.++.++++.-.. ...++++++..+++.+.|.++ + .+...++.|.|+++.++
T Consensus 231 ~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----~-~~~~~p~~~~f~~~~~~ 303 (355)
T d1lc5a_ 231 DAAMARMR--RQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL----P-LLTVYPGRANYLLLRCE 303 (355)
T ss_dssp HHHHHHHH--HHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS----T-TEEECCCSSSEEEEEES
T ss_pred hhhhHHHH--hhcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc----C-CcEECCCCCEEEEEECC
Confidence 5 444443 2334567788888888777653211 223444555555555555443 2 45544566677776665
Q ss_pred cCCCchhHHHHHHHHHHcCceeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 388 KTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
. +..++++.|.++||++.++. .+++||+. -+++|+++++++|+++|
T Consensus 304 ~-----~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~---~~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 304 R-----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAI---RSAAQNERLLAALRNVL 355 (355)
T ss_dssp C-----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEEC---CCHHHHHHHHHHHHHHC
T ss_pred C-----CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEe---CCHHHHHHHHHHHHHhC
Confidence 3 44578999999999997652 58999994 38999999999999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.94 E-value=3.1e-26 Score=227.56 Aligned_cols=344 Identities=12% Similarity=0.084 Sum_probs=214.2
Q ss_pred eCCCCeEEeccCCcccccC-CCCCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhh----------CCCeEE
Q 012138 71 DPEGNKYLDFLSAYSAVNQ-GHCHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMF----------GYDMVL 136 (470)
Q Consensus 71 d~~G~~~lD~~~~~~~~~l-G~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~----------~~~~v~ 136 (470)
...++.+|||..|.+.... -...+.+.+++.+.++... +.+..+..++++.+++++.+.+ ..++|+
T Consensus 26 ~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~ 105 (412)
T d1bw0a_ 26 SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV 105 (412)
T ss_dssp CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE
T ss_pred CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEE
Confidence 3456678899877432211 1134667788887776432 2222234456778888887654 245899
Q ss_pred ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHH
Q 012138 137 PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALE 215 (470)
Q Consensus 137 ~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le 215 (470)
+|+|+++|+..+++++.. +|+ .|++.+|+|++........+..... .+..+ +.... ++++++
T Consensus 106 it~G~~~al~~~~~~l~~---------~Gd-~Vlv~~P~y~~~~~~~~~~G~~~~~----v~~~~~~~~~~---~~~~l~ 168 (412)
T d1bw0a_ 106 LCSGGSHGILMAITAICD---------AGD-YALVPQPGFPHYETVCKAYGIGMHF----YNCRPENDWEA---DLDEIR 168 (412)
T ss_dssp EESHHHHHHHHHHHHHCC---------TTC-EEEEEESCCTHHHHHHHHTTCEEEE----EEEEGGGTTEE---CHHHHH
T ss_pred Eecccccchhhhhhhhhc---------ccc-ceeeeeccchhhhhhhhccCccccc----cccccccccch---hhHHHH
Confidence 999999999999987754 465 7888999997655444333221111 00000 00111 788888
Q ss_pred HHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcccc--cc---CCCCcc---
Q 012138 216 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS--DW---EEVRPD--- 287 (470)
Q Consensus 216 ~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~--~~---~~~~pd--- 287 (470)
+.+.. +++++++..++||||.++ +.+.+++|.++|++|+++||+||+|.++.+.|..... .. ......
T Consensus 169 ~~~~~---~~~~~~l~np~NPtG~~~-~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
T d1bw0a_ 169 RLKDD---KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVI 244 (412)
T ss_dssp HHCCT---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEE
T ss_pred hhhhc---cccccccccccccccccc-hhhhccccccccccCCeeeechhhHHHhccCCCCCcccccccccccccccccc
Confidence 77655 777777555599999999 9999999999999999999999999988766643111 11 111111
Q ss_pred eeecccccc-CCCcceeEEEecHHHH------hhcCcCCccCCCCCCHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHH
Q 012138 288 MVILGKALG-GGVIPVSAVLADKEVM------LCIQPGEHGSTFGGNPLASAVAIASLDV-IRD--EKLAERSAHLGEEL 357 (470)
Q Consensus 288 i~s~sK~l~-gG~~~ig~v~~~~~~~------~~~~~~~~~~t~~~~~~~~aaa~a~l~~-~~~--~~~~~~~~~~~~~l 357 (470)
+.++||.++ +|+ |+||+++++... ..... ....+.+.+...++++.+.+.. .++ ...++.++++++.+
T Consensus 245 ~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 322 (412)
T d1bw0a_ 245 LGGTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKR-VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYL 322 (412)
T ss_dssp EEESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHH-HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccCccCCC-Ccccccccchhhcchhhhhhhcc-ccccccCCchhhhhhcccccccccccccccccchhHHHHHHH
Confidence 226899988 898 999999764322 21111 1112223344444444333321 111 22344444444444
Q ss_pred HHHHHHHHhhCCCceEEEeccceeEEE-EeccCCC--chhHHHHHHHHHHc-CceeccC----CCCEEEEecCCCCCHHH
Q 012138 358 RQHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTAL--PVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNE 429 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~~~--~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~~~~~t~e~ 429 (470)
.+.|.+ .+ .+....+.|.++.| .++.... ..+..+++++|+++ ||.+.|+ .++++||+ +..++++
T Consensus 323 ~~~l~~----~~-g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis--~~~~~e~ 395 (412)
T d1bw0a_ 323 YNHIGE----CI-GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT--TTRPVEV 395 (412)
T ss_dssp HHHHTT----ST-TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE--CCSCHHH
T ss_pred HHHHHH----hc-CceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEE--EcCCHHH
Confidence 444433 21 35555666655544 4542110 13577888888765 9999886 47899999 5679999
Q ss_pred HHHHHHHHHHHHhccc
Q 012138 430 LQEGSKALHDVLELDL 445 (470)
Q Consensus 430 i~~~~~~l~~~l~~~~ 445 (470)
+++++++|+++++ +.
T Consensus 396 l~eal~Rl~~~l~-~~ 410 (412)
T d1bw0a_ 396 YREAVERIKAFCQ-RH 410 (412)
T ss_dssp HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHH-hc
Confidence 9999999999987 53
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.4e-26 Score=222.83 Aligned_cols=335 Identities=13% Similarity=0.095 Sum_probs=210.4
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC-CCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHh
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKW 155 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~ 155 (470)
+|||.+-.... ++|++++|+.++... ...| ..+...+|++++++++|.+++++++||++|+++|+++++.
T Consensus 1 ~~~~~~~~~t~----p~p~v~~A~~~a~~g----~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~- 71 (343)
T d1m6sa_ 1 MIDLRSDTVTK----PTEEMRKAMAQAEVG----DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQ- 71 (343)
T ss_dssp CEECSCGGGCC----CCHHHHHHHHTCCCC----CGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCC-
T ss_pred CcccccccCCC----CCHHHHHHHHhhhcC----CcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhc-
Confidence 47887765444 479999998765321 1112 3456789999999999999999999999999999998765
Q ss_pred chhcccCCCCCcEEEEEccCccccccchhcccC-CcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---CCeEEEEEc
Q 012138 156 GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFE 231 (470)
Q Consensus 156 ~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---~~~~~vi~e 231 (470)
+++ .++.....++........... ...+. +....... .|++.+++.+.... .++..++++
T Consensus 72 --------~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~ 135 (343)
T d1m6sa_ 72 --------RGD-EVILEADSHIFWYEVGAMAVLSGVMPH----PVPGKNGA---MDPDDVRKAIRPRNIHFPRTSLIAIE 135 (343)
T ss_dssp --------TTC-EEEEETTCHHHHSSTTHHHHHTCCEEE----EECEETTE---ECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred --------cCC-ceeccccccceeeecccccccccceee----ccccccCc---cCHHHHHHhhhhhhcccccccccccc
Confidence 355 555555554322211111111 11110 00000011 17888888886532 355666655
Q ss_pred c-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCcceeEEEecH
Q 012138 232 P-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADK 309 (470)
Q Consensus 232 p-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~~~ 309 (470)
. .++++|.+. +.+++++|.++|++||+++++|++++++......+.........+..+++|..+ +|. ..++++...
T Consensus 136 ~~~~~~~~~~~-~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 213 (343)
T d1m6sa_ 136 NTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDR 213 (343)
T ss_dssp SSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECH
T ss_pred cccccCCceec-CHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccccccccccccccccc-ccccccccH
Confidence 4 566777777 899999999999999999999999986543332222211112234556666555 344 778888888
Q ss_pred HHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccC
Q 012138 310 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT 389 (470)
Q Consensus 310 ~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~ 389 (470)
+.+...........++.......++.............+...++..++.+.+.++..... . ......++++.++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~v~~~~~~~ 289 (343)
T d1m6sa_ 214 DFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVN--P--EDVKTNMVILRTDNL 289 (343)
T ss_dssp HHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCC--G--GGCCSSEEEEECTTS
T ss_pred HHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCcc--C--CCCCceEEEEEeCCC
Confidence 776655433222222222222222222222222233445555666666676666543211 1 112344566655433
Q ss_pred CCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 390 ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. .++.++++.|+++||++.+.+.+++||+++..+|+|+||+++++|+++++ ++
T Consensus 290 ~--~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~-~~ 342 (343)
T d1m6sa_ 290 K--VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFR-KF 342 (343)
T ss_dssp S--SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHH-HH
T ss_pred c--ccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 2 46789999999999999998899999999999999999999999999998 75
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.93 E-value=8.4e-25 Score=218.28 Aligned_cols=303 Identities=14% Similarity=0.107 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHhhhhC------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 115 YNDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
..++++++++++.++++ .++|++|+|+++|+..+++++.. +|+ .|++..|+|++.........+
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~---------pGd-~Vlv~~P~y~~~~~~~~~~~g 155 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD---------PGE-AVLIPTPYYPGFDRDLKWRTG 155 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC---------TTC-EEEEEESCCTTHHHHTTTTTC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC---------CCC-EEEEeCCCchhHHHHHHHhcC
Confidence 34567778888877654 35899999999999999997754 565 788889998665433322222
Q ss_pred CcccccCCCCCCCC-eeeecCCCHHHHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 189 DNEAIRGFGPLLPG-HLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 189 ~~~~~~~~~~~~~~-~~~~~~~d~~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
...... +...+ ...+ |++++++.+.+ .+.+++++++..++||+|.++ +++.+++|.++|++||++||+|
T Consensus 156 ~~~v~v---~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~-s~~~l~~i~~~a~~~~~~vI~D 228 (431)
T d1m7ya_ 156 VEIVPI---HCTSSNGFQI---TETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISD 228 (431)
T ss_dssp CEEEEE---ECCGGGTSCC---CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEE
T ss_pred ceeccc---cccchhcccc---cHHHhhhhhhhhhhccCcceEEEecCccccccccc-cccccccccccccccCcceeec
Confidence 111100 00000 0111 78888887764 234677777444499999999 9999999999999999999999
Q ss_pred ccccCCcccCCcc-cc----ccCCC-----Ccc----eeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHH
Q 012138 265 EIQSGLARSGRML-AS----DWEEV-----RPD----MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL 329 (470)
Q Consensus 265 ev~~g~g~~G~~~-~~----~~~~~-----~pd----i~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~ 329 (470)
|+|..+.+.+..+ .. ..... ..+ +.+|||.++ +|+ |+|+++++++++....... ......+..
T Consensus 229 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~-RiG~~~~~~~~i~~~~~~~-~~~~~~~~~ 306 (431)
T d1m7ya_ 229 EIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATKM-SSFGLVSSQ 306 (431)
T ss_dssp CTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHHH-GGGSCCCHH
T ss_pred ccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCC-ccceeccchhhhHHHHHHH-hcccccccc
Confidence 9999765554322 11 00010 011 338999998 898 9999999877654432211 122223344
Q ss_pred HHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEE-EeccC---CCchhHHHHHH
Q 012138 330 ASAVAIASLDVI---RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKT---ALPVSAYDICL 400 (470)
Q Consensus 330 ~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~-~~~~~---~~~~~~~~~~~ 400 (470)
.+.++.+.+... ++ .+.+++++++.+.+.+.|++ ..+....+.|.++.| .+... ....+..++++
T Consensus 307 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~------~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~ 380 (431)
T d1m7ya_ 307 TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK------SGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWK 380 (431)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHH
T ss_pred ccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc------CCcEEecCCceeEEEEECccccccCcccCHHHHHH
Confidence 443333333211 11 22333444444445444443 145566676655554 44321 11235567888
Q ss_pred HHHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 012138 401 KMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELD 444 (470)
Q Consensus 401 ~l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~ 444 (470)
+|.++ ||.+.|+ .++++|++.. ..+++++++++++|+++++ +
T Consensus 381 ~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~-~ 429 (431)
T d1m7ya_ 381 KIVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVG-E 429 (431)
T ss_dssp HHHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH-H
Confidence 88765 9999875 3689999942 3578899999999999997 5
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.93 E-value=1.5e-24 Score=216.29 Aligned_cols=301 Identities=12% Similarity=0.091 Sum_probs=188.4
Q ss_pred CCCcHHHHHHHHhhhhC------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccC
Q 012138 115 YNDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC 188 (470)
Q Consensus 115 ~~~~~~~l~~~l~~~~~------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~ 188 (470)
..++++++++++.+.++ .++|++|+|+++|+..++.++.. +|+ .|++..|+|.+.........+
T Consensus 85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~---------~Gd-~Vlv~~P~y~~~~~~~~~~~g 154 (428)
T d1iaya_ 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD---------PGD-AFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC---------TTC-EEEEESSCCTTHHHHTTTTTC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC---------CCC-EEEEccCCchHHHHHHHHhcC
Confidence 34667788888877654 46899999999999999987754 565 788889998655432221222
Q ss_pred CcccccCCCCCCC-CeeeecCCCHHHHHHHHHh---cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEe
Q 012138 189 DNEAIRGFGPLLP-GHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD 264 (470)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~---~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~D 264 (470)
...... +..+ +...+ |+++++.+++. ...+++++++..++||+|.++ +.+.+++|.++|++||++||+|
T Consensus 155 ~~~v~v---~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~vI~D 227 (428)
T d1iaya_ 155 VQLIPI---HCESSNNFKI---TSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCD 227 (428)
T ss_dssp CEEEEE---CCCTTTTTCC---CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEE
T ss_pred CeEEEe---eccccccccc---ccccccchhhhhhccCCCceEEEEccCCCcccccc-cccccchhheeeccCcEEEEec
Confidence 111100 0000 01112 67777766543 345677777444499999999 9999999999999999999999
Q ss_pred ccccCCcccCCccc-c-c---c---CCCCcc----eeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHH
Q 012138 265 EIQSGLARSGRMLA-S-D---W---EEVRPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLA 330 (470)
Q Consensus 265 ev~~g~g~~G~~~~-~-~---~---~~~~pd----i~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~ 330 (470)
|+|..+.+.+..+. + + . ....+| +.+|||.++ +|+ |+|++++ ++.+.+.+...... ...+...
T Consensus 228 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~Gl-RiG~~~~~~~~l~~~~~~~~~~--~~~~~~~ 304 (428)
T d1iaya_ 228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKMSSF--GLVSTQT 304 (428)
T ss_dssp CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHHHTT--SCCCHHH
T ss_pred ccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCc-ccccccccccchhhhhhhhhcc--ccccccc
Confidence 99998765553321 1 0 0 001112 348999987 798 9999997 55666655432221 1233333
Q ss_pred HHHHHHHHH---HHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE-EEEeccCC---CchhHHHHHHH
Q 012138 331 SAVAIASLD---VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTA---LPVSAYDICLK 401 (470)
Q Consensus 331 ~aaa~a~l~---~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~-~~~~~~~~---~~~~~~~~~~~ 401 (470)
+.++.+.+. .+++ .+.++.++++.+.+.+.|+.. .+....+.|.|+ ++.+.... ...+..+++++
T Consensus 305 ~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~------gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ 378 (428)
T d1iaya_ 305 QYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV------GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRV 378 (428)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccccccccccchhHHHHHHHHHhC------CCEEecCCcceEEEEECccccccCCCCCHHHHHHH
Confidence 333333221 1111 223444555556666666542 233445565554 44443211 01245578888
Q ss_pred HHHc-CceeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 402 MKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~-Gv~~~~~------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|.++ ||.+.|+ +++++||++. ..+++++++++++|+++|.
T Consensus 379 Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 379 IINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp HHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHh
Confidence 8765 9999875 3789999952 3577889999999999997
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=6.4e-25 Score=211.69 Aligned_cols=313 Identities=12% Similarity=0.054 Sum_probs=200.3
Q ss_pred EeCCCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHcc--ccCCCCCCCcHHHHHHHHhhh-hCCCeEEecCChhHHHH
Q 012138 70 WDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLT--LSSRAFYNDKFPVFAERLTSM-FGYDMVLPMNTGAEGVE 146 (470)
Q Consensus 70 ~d~~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~-~~~~~v~~~~sGteA~~ 146 (470)
+...++.++++..|-. +++ .++.+.+++.+.+.... +++.....++++.+++++... ...++|++|+|+++++.
T Consensus 14 ~~~~~~d~~~l~~~en--p~~-~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~ 90 (334)
T d2f8ja1 14 YETEKRDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIY 90 (334)
T ss_dssp CCCCCCCSEECSSCCC--SSC-CCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHH
T ss_pred ccccCCCceEEECCCC--CCC-CCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHH
Confidence 4456788888876642 333 67899999988875432 222222223344444444322 24567999999999887
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-CHHHHHHHHHhcCCCe
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQI 225 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~Le~~l~~~~~~~ 225 (470)
++++ .++ .|++.+|+|.+........+... ..+|.+ |....+ .. ..++
T Consensus 91 ~l~~-------------~~d-~v~i~~P~y~~~~~~~~~~g~~~-------------v~v~~~~~~~~~~-~~---~~~~ 139 (334)
T d2f8ja1 91 VMML-------------MFD-RSVFFPPTYSCYRIFAKAVGAKF-------------LEVPLTKDLRIPE-VN---VGEG 139 (334)
T ss_dssp HHHH-------------HSS-EEEECSSCCHHHHHHHHHHTCCE-------------EECCCCTTSCCCC-CC---CCTT
T ss_pred HHhh-------------hcc-ccccccccccccccchhccCCcc-------------ccccccccccccc-cc---cccc
Confidence 7654 244 67888999976644443333221 122221 000000 11 1255
Q ss_pred EEEE-EccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecccccc-CCCccee
Q 012138 226 AGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVS 303 (470)
Q Consensus 226 ~~vi-~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig 303 (470)
++++ ++| +||+|.++ +.+ .|.++ .++++++|+||++.++............+...-+.||||.++ +|+ |+|
T Consensus 140 ~~l~l~nP-~NPtG~~~-s~~---~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-R~G 212 (334)
T d2f8ja1 140 DVVFIPNP-NNPTGHVF-ERE---EIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQ-RVG 212 (334)
T ss_dssp EEEEEESS-CTTTCCCC-CHH---HHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTT-CEE
T ss_pred eEEEeccc-ccccceee-cHH---Hhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhh-hhh
Confidence 6666 566 99999999 544 44444 467999999999975533322221111111112449999988 899 999
Q ss_pred EEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeE
Q 012138 304 AVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 382 (470)
Q Consensus 304 ~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~ 382 (470)
|+++++++++.+.... .+++.+..++.++.+.++..+. +...+.+++.++++.+.|++++ +...++.|.|+
T Consensus 213 ~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g------~~~~~~~g~f~ 284 (334)
T d2f8ja1 213 YVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG------YRITDSRGNFV 284 (334)
T ss_dssp EEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT------CEECCCCSSEE
T ss_pred hcccchHHHHHHHHhh--cccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC------CeECCCCceEE
Confidence 9999999999886433 3455677777777776654322 3455667777777888777763 34456788877
Q ss_pred EEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 383 AVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
++.+.. .++.++++.|+++||++.+. .+++|+++ -+.||+++++++|++
T Consensus 285 ~~~~~~----~~~~~~~~~L~~~GI~vr~~-~~~vRis~---g~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 285 FVFMEK----EEKERLLEHLRTKNVAVRSF-REGVRITI---GKREENDMILRELEV 333 (334)
T ss_dssp EEECCH----HHHHHHHHHHHHTTEECEEE-TTEEEEEC---CCHHHHHHHHHHHHH
T ss_pred EEECCC----CCHHHHHHHHHHCCCEECCC-CCeEEEEc---CCHHHHHHHHHHHhc
Confidence 665543 36789999999999999765 68999994 478889999998875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.2e-23 Score=200.54 Aligned_cols=283 Identities=16% Similarity=0.208 Sum_probs=188.1
Q ss_pred CCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 114 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
|+.....+|.+++++++|. ++|++|+|+++++..+++++.. +|+..|++..|+|..........+.. .
T Consensus 53 YPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~---------pgd~~Vl~~~P~y~~~~~~~~~~g~~-v 122 (354)
T d1fg7a_ 53 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE---------PGKDAILYCPPTYGMYSVSAETIGVE-C 122 (354)
T ss_dssp CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC---------TTTCEEEECSSSCTHHHHHHHHHTCE-E
T ss_pred CCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc---------cccccccccccccccchhhhhccCce-e
Confidence 3344457899999999874 6899999999999999998765 57778888889986554433332221 1
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA 271 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g 271 (470)
. ..+... ...+ |+++++..+. ++++|++.+.+||+|.++ +++.++.+.+.++ ++.++|+||++..|.
T Consensus 123 ~---~~~~~~-~~~~---d~~~l~~~~~----~~~~v~~~~pnNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~f~ 189 (354)
T d1fg7a_ 123 R---TVPTLD-NWQL---DLQGISDKLD----GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFC 189 (354)
T ss_dssp E---ECCCCT-TSCC---CHHHHHTSCT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred e---cccccc-cccc---chhhhhhccc----ccceeeccCCCccceeEe-eeccccccccccc-ccccccccccchhhc
Confidence 1 011111 1122 7888776553 678888666699999999 8888888888776 567778888887665
Q ss_pred ccCCccccccCCCCcc---eeecccccc-CCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---h
Q 012138 272 RSGRMLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---E 344 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pd---i~s~sK~l~-gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~ 344 (470)
....... .....+. +-||||.++ +|+ |+||+++++++++.+... ...+..+.+++.++.+++..-.. .
T Consensus 190 ~~~~~~~--~~~~~~~~iv~~S~SK~~~laGl-RiGy~i~~~~~i~~l~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (354)
T d1fg7a_ 190 PQASLAG--WLAEYPHLAILRTLSKAFALAGL-RCGFTLANEEVINLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMR 264 (354)
T ss_dssp GGGCSGG--GTTTCTTEEEEEESSSTTCCGGG-CCEEEEECHHHHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHH
T ss_pred cccccch--hhcccccceEEeCCccccCCCcc-ccccccccchhhhhhhhh--cCccchhhHHHHHHHHHHhhhcccccc
Confidence 4332211 1112222 239999998 999 999999999999888643 23455555555554444322111 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----CCEEE
Q 012138 345 KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVR 418 (470)
Q Consensus 345 ~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----~~~iR 418 (470)
...+++.+.++++.+.+.++ +.+..+ ++.|.|+++.++ ++.++++.|.++||++.+++ ++++|
T Consensus 265 ~~~~~~~~~r~~l~~~l~~~-----~~~~~~~p~~~~f~~~~~~------~~~~~~~~L~~~gIlvr~~~~~~~~~~~lR 333 (354)
T d1fg7a_ 265 ERVAQIIAEREYLIAALKEI-----PCVEQVFDSETNYILARFK------ASSAVFKSLWDQGIILRDQNKQPSLSGCLR 333 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-----TTEEEECCCSSSEEEEEET------THHHHHHHHHHTTEECEECTTSTTCTTEEE
T ss_pred ccchhhhhHHHHHHHHHHhC-----CCcceeCCCCceEEEEeCC------CHHHHHHHHHHCCcEEecCCCCCCCCCEEE
Confidence 22334445555555555553 234333 455666766654 46789999999999997643 68999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 012138 419 LTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~ 438 (470)
+++ .|++|+++++++|+
T Consensus 334 isi---gt~ee~~~~l~aLk 350 (354)
T d1fg7a_ 334 ITV---GTREESQRVIDALR 350 (354)
T ss_dssp EEC---CCHHHHHHHHHHHH
T ss_pred EEe---CCHHHHHHHHHHHh
Confidence 993 48889998888876
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.91 E-value=1.2e-23 Score=206.49 Aligned_cols=326 Identities=14% Similarity=0.125 Sum_probs=211.2
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC------CCCCCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR------AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
+.+-|+|..+ .|..+..|++++.+.++....... ....+...++.+.++++++. ++|++|+|+|+|
T Consensus 6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a 79 (381)
T d1elua_ 6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 79 (381)
T ss_dssp TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence 3456777542 344677899999888765322111 01123345677788888874 579999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC------C-HHHHHHH
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG------D-ITALEKI 217 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d-~~~Le~~ 217 (470)
++.++..+.. .+|+ .|++.+..|++.......+....+.. ...+|.+ + .+.+++.
T Consensus 80 ~~~~~~~l~~--------~~g~-~i~~~~~~~~s~~~~~~~~~~~~g~~---------~~~v~~~~~~~~~~~~~~l~~~ 141 (381)
T d1elua_ 80 CDIVLWGLDW--------HQGD-EILLTDCEHPGIIAIVQAIAARFGIT---------YRFFPVAATLNQGDAAAVLANH 141 (381)
T ss_dssp HHHHHHHSCC--------CTTC-EEEEETTCCHHHHHHHHHHHHHHCCE---------EEEECCGGGSSSSCHHHHHHTT
T ss_pred hhhcchhhhh--------cCCc-eEEEeccccceeeecccccccccccc---------ccccccccccccchHHHHHHhh
Confidence 9998876532 0344 77788888654322211111000010 1122221 1 3334443
Q ss_pred HHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc----CcEEEEeccccCCcccCCccccccCCCCccee--ec
Q 012138 218 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY----NILMIADEIQSGLARSGRMLASDWEEVRPDMV--IL 291 (470)
Q Consensus 218 l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~----gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~ 291 (470)
++ ++++++++..++|++|.+.| +++|.++|++| ++++++|.+|+ +|.. .+..+ ...+|++ ++
T Consensus 142 i~---~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~--~~~~~--~~~~D~~~~s~ 209 (381)
T d1elua_ 142 LG---PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL--PLDFS--RLEVDYYAFTG 209 (381)
T ss_dssp CC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB--CCCTT--TSCCSEEEEES
T ss_pred hc---ccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc-cccc--ccccc--ccccccccccc
Confidence 33 48999998888999999998 99999999985 69999999997 2211 12222 3345766 45
Q ss_pred cccccCCCcceeEEEecHHHHhhcCcCCcc----------------------CCCCCCHHHHHHHHHHHHHHhh----hh
Q 012138 292 GKALGGGVIPVSAVLADKEVMLCIQPGEHG----------------------STFGGNPLASAVAIASLDVIRD----EK 345 (470)
Q Consensus 292 sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~----------------------~t~~~~~~~~aaa~a~l~~~~~----~~ 345 (470)
.|.++++. ++|+++.+++..+.+.+...+ ...+.+.....++.++++.+.+ +.
T Consensus 210 ~K~~~~p~-G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~ 288 (381)
T d1elua_ 210 HKWFAGPA-GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEE 288 (381)
T ss_dssp SSTTCCCT-TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred cccccccc-hhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccccc
Confidence 59998776 889999998888776543211 1113566666777777776654 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceecc-CCCCEEEEecCCC
Q 012138 346 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-THDTIVRLTPPLS 424 (470)
Q Consensus 346 ~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~~~~~iR~~~~~~ 424 (470)
..++.+++.+++.+.|+++... ..+....+++.++.+.+.... ..+++.+.|.++||.+.. +.++++|++++..
T Consensus 289 ~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~vsf~~~~~~---~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~ 363 (381)
T d1elua_ 289 RYQAICQRSEFLWRGLNQLPHV--HCLATSAPQAGLVSFTVDSPL---GHRAIVQKLEEQRIYLRTIADPDCIRACCHYI 363 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTE--EESCSSCCSSSEEEEEECSSS---CHHHHHHHHHHTTEECEEETTTTEEEEECCTT
T ss_pred chhhhhhHHHHHHHHHhcCCCe--EecCCCCccccEEEEEcCCCC---CHHHHHHHHHhCCcEEEecCCCCEEEEecCCC
Confidence 4566777788888888775321 011112345667777665443 667899999999998864 3478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 012138 425 ISSNELQEGSKALHDV 440 (470)
Q Consensus 425 ~t~e~i~~~~~~l~~~ 440 (470)
+|+|||+++++.|+++
T Consensus 364 nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 364 TDEEEINHLLARLADF 379 (381)
T ss_dssp CCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998763
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.91 E-value=1.6e-23 Score=211.10 Aligned_cols=355 Identities=16% Similarity=0.128 Sum_probs=209.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLA 152 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~ 152 (470)
.++.+|||.+..+..... +++...+......+ ...+...+|++++++++|.++++|++||++|++.|++++
T Consensus 40 ~~~~~id~~sd~~t~~~~-------~~~~a~~~~gd~~y--~~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~ 110 (465)
T d1ax4a_ 40 SSAVYIDLLTDSGTNAMS-------DHQWAAMITGDEAY--AGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 110 (465)
T ss_dssp GGGCSEECSCSSSCCCEE-------HHHHHHHHTCCCCS--SSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCeeeecccccchhhhh-------HHHHHHHhhhhhhh--ccChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHH
Confidence 367789998876654332 22222222221111 123445789999999999999999999999999999999
Q ss_pred HHhchhcccCCCCCcEEEEEccCccccccchhcc-cCCc------ccccCCCCCCCCeeeecCCCHHHHHHHHHhcC-CC
Q 012138 153 RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDN------EAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQ 224 (470)
Q Consensus 153 ~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~-~~ 224 (470)
++++.. .+. .+..++. +.+|+.+..+... .+.. .....+.+..+....+ |+++|++++++.. ..
T Consensus 111 ~~~g~~-~~~--~~~~~i~--~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~i~~~~~~~ 182 (465)
T d1ax4a_ 111 LKYKQK-EGK--AKNPVFI--SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDF---DIKKLKENIAQHGADN 182 (465)
T ss_dssp HHHHHH-TTC--CSSCEEE--ESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCB---CHHHHHHHHHHHCGGG
T ss_pred HHHHHh-cCC--CCCeEEe--ccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCcc---CHHHHHHHHHhhcccc
Confidence 875322 221 2223332 3456655443221 1111 1111111111112222 8999999998754 35
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC------CcccCCccccccCCCC------cceeecc
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG------LARSGRMLASDWEEVR------PDMVILG 292 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g------~g~~G~~~~~~~~~~~------pdi~s~s 292 (470)
++++++++.+|.+|..+++.+++++|.++|++||++||+||+|.. .++++..+..+..++. .|++++|
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s 262 (465)
T d1ax4a_ 183 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 262 (465)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEee
Confidence 778889998888877766999999999999999999999999972 2333333333322222 3677888
Q ss_pred ccccCCCcceeEEEecHH--HHhhcC----cCCccCCCCC-CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 012138 293 KALGGGVIPVSAVLADKE--VMLCIQ----PGEHGSTFGG-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 293 K~l~gG~~~ig~v~~~~~--~~~~~~----~~~~~~t~~~-~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~ 365 (470)
|+.+++....|+++.+++ +.+... ...+..++.+ ...+.+++...+.....+++.++..++.++|.+.|+++.
T Consensus 263 ~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g 342 (465)
T d1ax4a_ 263 AKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG 342 (465)
T ss_dssp TTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 877754425566666542 222211 1123333333 333333333334433345677777778889999998864
Q ss_pred hhCCCceEEEeccceeE-EEEecc--CCC---chhHH-HHHHHHHHcCceecc-----------------CCCCEEEEe-
Q 012138 366 QQFPNYVKEVRGRGLFN-AVEFDK--TAL---PVSAY-DICLKMKERGILAKP-----------------THDTIVRLT- 420 (470)
Q Consensus 366 ~~~p~~~~~~~~~g~~~-~~~~~~--~~~---~~~~~-~~~~~l~~~Gv~~~~-----------------~~~~~iR~~- 420 (470)
.. .+ .+.+... .+.... +.. ..... .+.+.+.+.||.+.. ...+.+||+
T Consensus 343 ~~---~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlal 416 (465)
T d1ax4a_ 343 IP---IQ---YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTI 416 (465)
T ss_dssp CC---BC---SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred Cc---cc---cCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeC
Confidence 22 22 2223222 222211 111 11223 344455666886431 124689997
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcccCCCCCC
Q 012138 421 PPLSISSNELQEGSKALHDVLELDLPKMRKP 451 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~ 451 (470)
|+..+|+||+|+++++|+++++ +.+++...
T Consensus 417 P~~~~T~eeiD~vv~~l~~v~~-~~~~i~gl 446 (465)
T d1ax4a_ 417 ARRVYTNDHMDYIADALIGLKE-KFATLKGL 446 (465)
T ss_dssp CTTSSCHHHHHHHHHHHHTTHH-HHTTCCCE
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHhccCc
Confidence 4577899999999999999998 77766543
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.8e-22 Score=198.11 Aligned_cols=327 Identities=15% Similarity=0.133 Sum_probs=218.1
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-------CCcHHHHHHHHhhhhCC---CeEEecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-------NDKFPVFAERLTSMFGY---DMVLPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~ 145 (470)
-|+|..+. +..++.+.+++.+.++.....+.... .+..++..+.++++++. +.++|++++|+++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~ 97 (405)
T d1jf9a_ 24 AYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 97 (405)
T ss_dssp EECCTTTC------CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEEeCccc------cCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHH
Confidence 46775443 23678999999998876433222111 12345666778888863 5799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..+++....... ..++.|++.+..||........+....+....+.|..++. .+ |++.+++++.+ +|
T Consensus 98 ~~~~~~~~~~~~------~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g-~~---~~~~~~~~i~~---~t 164 (405)
T d1jf9a_ 98 NLVANSWGNSNV------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG-TL---QLETLPTLFDE---KT 164 (405)
T ss_dssp HHHHHHHHHHHC------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTS-CB---CGGGHHHHCCT---TE
T ss_pred HHHHhccccccc------CCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCC-cC---CHHHHHHhccC---Cc
Confidence 988875432111 1234788888887765554433322112222122222211 12 67888887775 89
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCCCcceeec--cccccCCCcce
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVRPDMVIL--GKALGGGVIPV 302 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~~pdi~s~--sK~l~gG~~~i 302 (470)
++|+++.++|.+|.+.| +++|.++|+++|+++++|.+|+ .|.. +....+ .+|++++ -|.+ |+. .+
T Consensus 165 ~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~----~g~~~id~~~~--~~D~~~~s~hK~~-Gp~-G~ 232 (405)
T d1jf9a_ 165 RLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA----VMHHPVDVQAL--DCDFYVFSGHKLY-GPT-GI 232 (405)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT----TTTSCCCHHHH--TCSEEEEEGGGTT-SCS-SC
T ss_pred EEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee----ccccccchhhc--CCceeeccccccc-cCC-Cc
Confidence 99999999999999999 9999999999999999999998 2211 223333 3576654 4886 444 68
Q ss_pred eEEEecHHHHhhcCcCCccC----------------------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q 012138 303 SAVLADKEVMLCIQPGEHGS----------------------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEEL 357 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~----------------------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l 357 (470)
|+++.++++.+.+.+...+. .-+.+..+.+++.++++.+.+ +.+.++...+.+++
T Consensus 233 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~ 312 (405)
T d1jf9a_ 233 GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA 312 (405)
T ss_dssp EEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999887765431111 114677788888888887665 44555555555555
Q ss_pred HHHHHHHHhhCCCceEE--EeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC------------CCCEEEEecCC
Q 012138 358 RQHLFKIQQQFPNYVKE--VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------------HDTIVRLTPPL 423 (470)
Q Consensus 358 ~~~L~~l~~~~p~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------~~~~iR~~~~~ 423 (470)
.+.++.+ + .+.. ...++.++.+.++.. .+.++...|.++||.++.+ .++.+|++++.
T Consensus 313 ~~~l~~~----~-~~~~~~~~~r~~ivsf~~~~~----~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ 383 (405)
T d1jf9a_ 313 LSQLESV----P-DLTLYGPQNRLGVIAFNLGKH----HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAM 383 (405)
T ss_dssp HHHHTTS----T-TEEEESCTTCCSEEEEEETTC----CHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCT
T ss_pred HhhhhcC----C-cccccCCcCcCcEEEEEcCCC----CHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCC
Confidence 5554443 2 2222 223455666766532 5778899999999988643 25789999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 012138 424 SISSNELQEGSKALHDVLE 442 (470)
Q Consensus 424 ~~t~e~i~~~~~~l~~~l~ 442 (470)
.+|++||++++++|+++++
T Consensus 384 ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 384 YNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999886
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=5.1e-23 Score=197.49 Aligned_cols=330 Identities=13% Similarity=0.064 Sum_probs=186.9
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC-eEEecCChhHHHHHHHHHHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARK 154 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~v~~~~sGteA~~~al~~~~~ 154 (470)
.+|||.|. |.++.||+|++|+.++... +....+..+..+++++++++++|.+ .++||+|||+||+.+++.++.
T Consensus 3 ~~~~f~s~----n~~g~~P~v~~A~~~a~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~ 76 (345)
T d1v72a1 3 PALGFSSD----NIAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP 76 (345)
T ss_dssp CCCBCSCG----GGCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCC
T ss_pred CCcCcCCC----CCCCCCHHHHHHHHHHhcc--CccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHh
Confidence 46788865 3444799999999876432 2222234567789999999999987 588999999999999987754
Q ss_pred hchhcccCCCCCcEEEEEccCc-cccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcC---CCeEEEEE
Q 012138 155 WGYVKKKFSIDEAIIVSCCGCF-HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLF 230 (470)
Q Consensus 155 ~~~~~~~~~~g~~~ii~~~~~y-hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~---~~~~~vi~ 230 (470)
.++..++.....+ |.........++..... ..+ ......+++++++.+.+.. ..+..+++
T Consensus 77 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (345)
T d1v72a1 77 ---------PWGNIYCHPASHINNDECGAPEFFSNGAKLM-----TVD--GPAAKLDIVRLRERTREKVGDVHTTQPACV 140 (345)
T ss_dssp ---------TTEEEEECTTSHHHHSSTTHHHHHTTSCEEE-----ECC--CGGGCCCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred ---------cCCccccccccceeeechhhHHHhcCccccc-----ccc--cccccccHHHhhhhhcccccccccccceee
Confidence 2343333322221 11111111111111000 000 0011127899998887532 23444444
Q ss_pred cc-ccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCC--CcceeeccccccCCCcceeEEEe
Q 012138 231 EP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV--RPDMVILGKALGGGVIPVSAVLA 307 (470)
Q Consensus 231 ep-i~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~--~pdi~s~sK~l~gG~~~ig~v~~ 307 (470)
+. ..+++|... +.++++++.++|++||+++++|++|+++...+.......... ..+..+++|..+++. ..+....
T Consensus 141 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 218 (345)
T d1v72a1 141 SITQATEVGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL-AAEAIVL 218 (345)
T ss_dssp EEESSCTTSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS-SCEEEEE
T ss_pred eeeccccccccc-cchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccc-ccccccc
Confidence 44 355666666 888999999999999999999999996544443333333222 334567777666554 4444443
Q ss_pred c-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec-cceeEEEE
Q 012138 308 D-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVE 385 (470)
Q Consensus 308 ~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~-~g~~~~~~ 385 (470)
. ................+.+. ...++.+.+..+.+... ........++...+.+.....| .+....+ .+.+.++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~~~aa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-g~~~~~p~~~niv~~~ 295 (345)
T d1v72a1 219 FNTSLATEMSYRRKRAGHLSSK-MRFLSAQIDAYLTDDLW-LRNARKANAAAQRLAQGLEGLG-GVEVLGGTEANILFCR 295 (345)
T ss_dssp SSGGGHHHHHHHHHHTTCCCSS-THHHHHHHHHHTSTTHH-HHHHHHHHHHHHHHHHHHTTCT-TEEEESCCCSSEEEEE
T ss_pred chhhhhhhccccccccccccch-hhHHhhhhHHHHHHhhh-hhhccchhhHHHHHHHHHHhcC-CcEeccCCCccEEEEE
Confidence 2 22222211111111112222 22222223333333222 2222222233333333333443 4444433 44555554
Q ss_pred eccCCCchhHHHHHHHHHHcCceecc--CCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 386 FDKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~Gv~~~~--~~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
+. .++++.|+++|+.+.+ .+.+.+||+++..+|+||||+++++|+++
T Consensus 296 ~~--------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 296 LD--------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EC--------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cC--------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 32 3577899999988753 35789999999999999999999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.90 E-value=5.9e-23 Score=202.87 Aligned_cols=333 Identities=13% Similarity=-0.000 Sum_probs=199.3
Q ss_pred EeccCCcccccCCC--CCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCC--hhH---
Q 012138 78 LDFLSAYSAVNQGH--CHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNT--GAE--- 143 (470)
Q Consensus 78 lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~s--Gte--- 143 (470)
||+..|....+.|. ..+.|.++..+.++... +.+..+..++++++++++.+..+ .+.++.+.+ |+.
T Consensus 31 InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~ 110 (401)
T d7aata_ 31 MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR 110 (401)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred EEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHH
Confidence 67777744344443 34778888777775532 12222344556677777665543 345555433 222
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCC
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD 223 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~ 223 (470)
++..+++.+.. +|+ .|++.+|+|++........+..... .++.+ .+.... +.+.+++.+....+
T Consensus 111 ~~~~~~~~l~~---------pGd-~Vlv~~P~y~~y~~~~~~~g~~~~~-~~~~~--~~~~~~---~~~~~~~~~~~~~~ 174 (401)
T d7aata_ 111 VGANFLQRFFK---------FSR-DVYLPKPSWGNHTPIFRDAGLQLQA-YRYYD--PKTCSL---DFTGAMEDISKIPE 174 (401)
T ss_dssp HHHHHHHHHCT---------TCC-EEEEEESCCTTHHHHHHHTTCEEEE-EECEE--TTTTEE---CHHHHHHHHTTSCT
T ss_pred HHHHhhHhhcC---------CCc-eEEEecCCCcchhhHHHHcCCeEEE-Eeccc--cccccc---cHHHHHHHHhcCCC
Confidence 33333343333 565 8888999998765554443332111 00000 011111 68888888866556
Q ss_pred CeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc------ccccCCC-Ccceeecccccc
Q 012138 224 QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML------ASDWEEV-RPDMVILGKALG 296 (470)
Q Consensus 224 ~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~------~~~~~~~-~pdi~s~sK~l~ 296 (470)
+++++++..++||||.++ +.+.+++|.++|++||+++|+||+|.++.+.+... ....... ..-+.++||.++
T Consensus 175 ~~~~iii~~p~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 253 (401)
T d7aata_ 175 KSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 253 (401)
T ss_dssp TCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred ceEEEEecCCCCCccccC-CHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce
Confidence 788888777799999999 99999999999999999999999999887655321 0111111 112348889888
Q ss_pred -CCCcceeEEEecHHHHhhcCcC-------CccCCCCCCHHHHHHHHHHHHH--H----hh--hhHHHHHHHHHHHHHHH
Q 012138 297 -GGVIPVSAVLADKEVMLCIQPG-------EHGSTFGGNPLASAVAIASLDV--I----RD--EKLAERSAHLGEELRQH 360 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~~~~~~~~-------~~~~t~~~~~~~~aaa~a~l~~--~----~~--~~~~~~~~~~~~~l~~~ 360 (470)
.|+ |+||++++.++.+..... ......+.+.+.++++...++. + .+ +.++++++.+++.+.+.
T Consensus 254 ~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T d7aata_ 254 LYGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp CGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecc-ccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 898 999999876655543211 1112223455555555444431 1 11 23444555566666666
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
|++++.. ..+..+.++|.|+.| +.. + .+++++|++ .||.+.|+ +||++. ..++++|+.++++|.+
T Consensus 333 L~~~~~~--~~~~~~~~~~G~F~~-~~l-----s-~e~~~~L~~e~gV~~~pg----~Ris~a-~~~~~~i~~la~ai~~ 398 (401)
T d7aata_ 333 LKKEGSS--HNWQHITDQIGMFCF-TGL-----K-PEQVERLTKEFSIYMTKD----GRISVA-GVASSNVGYLAHAIHQ 398 (401)
T ss_dssp HHHTTCC--SCCHHHHHCCSSEEE-CCC-----C-HHHHHHHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHhCCC--CCcceECCCCeEEEe-cCC-----C-HHHHHHHHHhCCEEECCC----cEEEec-cCCHHHHHHHHHHHHH
Confidence 6654322 112234566667766 332 2 345666654 59999887 399854 3677889999999998
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 399 v~k 401 (401)
T d7aata_ 399 VTK 401 (401)
T ss_dssp HHC
T ss_pred HhC
Confidence 864
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.90 E-value=1.8e-22 Score=200.11 Aligned_cols=344 Identities=9% Similarity=0.013 Sum_probs=199.1
Q ss_pred EeccCCcccccCCCC--CHHHHHHHHHHHHHcc----ccCCCCCCCcHHHHHHHHhhhhC----CCe--EEecCChhHHH
Q 012138 78 LDFLSAYSAVNQGHC--HPKIMKALQEQAEKLT----LSSRAFYNDKFPVFAERLTSMFG----YDM--VLPMNTGAEGV 145 (470)
Q Consensus 78 lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~----~~~--v~~~~sGteA~ 145 (470)
||++.|......|.. .|.|.++....+..-. +.+..+..++++++++++.+..+ .++ ++.+.+++.++
T Consensus 33 Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (412)
T d1ajsa_ 33 VNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGAL 112 (412)
T ss_dssp EECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHH
Confidence 566555332333332 3667776554443221 11222233445556666554432 233 56677788888
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..+...+...... -..+|+ .|++.+|+|..........++.......+.. .+.... |.+.+++.+....+++
T Consensus 113 ~~~~~~l~~~~~~--~~~pGd-~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~--~~~~~~---d~~~~~~~~~~~~~~~ 184 (412)
T d1ajsa_ 113 RIGAEFLARWYNG--TNNKDT-PVYVSSPTWENHNGVFTTAGFKDIRSYRYWD--TEKRGL---DLQGFLSDLENAPEFS 184 (412)
T ss_dssp HHHHHHHHHHSSS--SSCCCS-CEEEEESCCTHHHHHHHHTTCSCEEEEECEE--TTTTEE---CHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhhh--cCCCCC-EEEEeCCcchhhHHHHHHcCCeEEEeecccc--cccccc---cHHHHHHHHHhccCCc
Confidence 7777655432111 012555 8888999986554443333332111000000 001112 6788877776655677
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc---cc---cccC-CCCcceeecccccc-C
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM---LA---SDWE-EVRPDMVILGKALG-G 297 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~---~~---~~~~-~~~pdi~s~sK~l~-g 297 (470)
+++++.++|||||.++ +++.+++|+++|++||+++|+||+|.++.+.+.. +. .... ....-+.++||.++ .
T Consensus 185 ~~il~~~P~NPTG~v~-s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~ 263 (412)
T d1ajsa_ 185 IFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY 263 (412)
T ss_dssp EEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG
T ss_pred EEEEecCCCCCcCCCC-CHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCC
Confidence 8888766799999999 9999999999999999999999999988665522 11 0111 11112347889887 7
Q ss_pred CCcceeEEEecHHHHhhcC-------cCCccCCCCCCHHHHHHHHHHHHH------Hhh--hhHHHHHHHHHHHHHHHHH
Q 012138 298 GVIPVSAVLADKEVMLCIQ-------PGEHGSTFGGNPLASAVAIASLDV------IRD--EKLAERSAHLGEELRQHLF 362 (470)
Q Consensus 298 G~~~ig~v~~~~~~~~~~~-------~~~~~~t~~~~~~~~aaa~a~l~~------~~~--~~~~~~~~~~~~~l~~~L~ 362 (470)
|+ |+|++++..+..+.+. ....+...+.+.++++++...+.. +.+ +.++++++++++.+.+.|+
T Consensus 264 G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~ 342 (412)
T d1ajsa_ 264 NE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLE 342 (412)
T ss_dssp GG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 9999998754433321 111222333556666655554432 111 2345556666666666666
Q ss_pred HHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHH-HHcCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 363 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM-KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 363 ~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
+++.. ..+..+..++.|+.| +.. +. +++++| .++||++.|++ ||++. ..++++|++++++|.+++
T Consensus 343 ~~~~~--~~~~~i~~~~G~F~~-~~l-----s~-~~v~~L~~e~gV~~vpg~----Ri~~a-g~~~~~i~~~a~aI~~av 408 (412)
T d1ajsa_ 343 ALKTP--GTWNHITDQIGMFSF-TGL-----NP-KQVEYLINQKHIYLLPSG----RINMC-GLTTKNLDYVATSIHEAV 408 (412)
T ss_dssp HTTCS--SCCHHHHHCCSSEEE-CCC-----CH-HHHHHHHHTTCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred HhCCC--CCeeeecCCCeEEEe-cCC-----CH-HHHHHHHHhCCEEEeCCC----eEEec-cCCHHHHHHHHHHHHHHH
Confidence 54321 112223445556655 332 33 344555 45599998875 88843 367889999999999999
Q ss_pred hcccC
Q 012138 442 ELDLP 446 (470)
Q Consensus 442 ~~~~~ 446 (470)
+ +++
T Consensus 409 ~-~~~ 412 (412)
T d1ajsa_ 409 T-KIQ 412 (412)
T ss_dssp H-HCC
T ss_pred H-hcC
Confidence 8 763
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.9e-23 Score=207.52 Aligned_cols=327 Identities=17% Similarity=0.131 Sum_probs=200.1
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccccc-
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR- 194 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~- 194 (470)
.+...+|++++++++|.+.+++++||++|++.++++++.++..... .++...+...+.||+.+......++......
T Consensus 73 ~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~ 150 (467)
T d2v1pa1 73 SRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKG--LDRSKMVAFSNYFFDTTQGHSQINGCTVRNVY 150 (467)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHC--CCTTTCEEEESSCCHHHHHHHHHTTCEEEECB
T ss_pred CchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEec--CCCCcEEEEecccccccHHHHHHcCCeeeecc
Confidence 4556899999999999999999999999999999988875322111 1233455567777777766666655321100
Q ss_pred -CCCC-CCCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-C-
Q 012138 195 -GFGP-LLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G- 269 (470)
Q Consensus 195 -~~~~-~~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g- 269 (470)
.... ...........|+++|+++++++. ..+++|++|+++|.+|..+++.+++++|+++|++||++||+|+++. |
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~ 230 (467)
T d2v1pa1 151 IKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAEN 230 (467)
T ss_dssp CTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHH
T ss_pred cccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhcc
Confidence 0000 000011122338999999998754 4678899999888876666599999999999999999999999987 2
Q ss_pred -CcccCCccccccCC---------CCcceeeccccccCCCccee-EEEecHHH-HhhcC-------cCCccCCCCCC-HH
Q 012138 270 -LARSGRMLASDWEE---------VRPDMVILGKALGGGVIPVS-AVLADKEV-MLCIQ-------PGEHGSTFGGN-PL 329 (470)
Q Consensus 270 -~g~~G~~~~~~~~~---------~~pdi~s~sK~l~gG~~~ig-~v~~~~~~-~~~~~-------~~~~~~t~~~~-~~ 329 (470)
.+..+....+...+ ...|++++++..+++. +.| +++.+++. ..... ...+..++.+. ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~-~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
T d2v1pa1 231 AYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV-PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGG 309 (467)
T ss_dssp HHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC-SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHH
T ss_pred ccccccccccccCCcccccchhhcccCCEEEecCCCCCCC-CCceeEEecchhhhhHHHhhcccccccccCcchhhhHHH
Confidence 11122222222222 1357777776555333 444 44444432 22111 11233344444 34
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEec--cCCC---chhHHH-HHHHHH
Q 012138 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD--KTAL---PVSAYD-ICLKMK 403 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~--~~~~---~~~~~~-~~~~l~ 403 (470)
.++++...+.....+++.++..++.++|.++|.+... .+. ...+....+... .... ...... +.+.+.
T Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 383 (467)
T d2v1pa1 310 AMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV----VCQ--QAGGHAAFVDAGKLLPHIPADQFPAQALACELYK 383 (467)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC----CEE--EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC----ccc--CCCccceeecchhhcCCcchhhhhhHHHHHHHHH
Confidence 4444444455555567888888899999999987532 122 222222222211 0110 112233 334445
Q ss_pred HcCceec-----------------cCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhcccCCCCCCC
Q 012138 404 ERGILAK-----------------PTHDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMRKPK 452 (470)
Q Consensus 404 ~~Gv~~~-----------------~~~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~ 452 (470)
+.||... +...+.+||++| ..+|+||||+++++|+++++ +.+.+...+
T Consensus 384 ~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~-~~~~i~~l~ 449 (467)
T d2v1pa1 384 VAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE-NAANIKGLT 449 (467)
T ss_dssp HHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH-TGGGCCCEE
T ss_pred HcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH-HHHhccCce
Confidence 6687532 223678999876 57799999999999999998 777665433
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.88 E-value=1.5e-21 Score=189.92 Aligned_cols=322 Identities=14% Similarity=0.166 Sum_probs=189.8
Q ss_pred CCCCHHHHHHHHHHHHHcccc---CCC-----CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhccc
Q 012138 90 GHCHPKIMKALQEQAEKLTLS---SRA-----FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 90 G~~~p~v~~a~~~~~~~~~~~---~~~-----~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
|.-+|++++++.+..+.+... ... ...+.++.+++.+++++|.|.+++|+||++|+.+++..+.+
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~------- 84 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAK------- 84 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCC-------
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhC-------
Confidence 445688888887654432211 000 01246788999999999999999999999999999987754
Q ss_pred CCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcC--CCeEEEEEccccCCCc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESG--DQIAGFLFEPIQGEAG 238 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~--~~~~~vi~epi~n~~G 238 (470)
+|+ .||+..++|+ +...+....+..... .|... +...+ |++++++++++.. .++++|+++.++|++|
T Consensus 85 --~gd-~Vi~~~~~h~-s~~~~~~~~g~~v~~---v~~~~~~~~~i---~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG 154 (364)
T d2e7ja1 85 --KDA-WVVMDENCHY-SSYVAAERAGLNIAL---VPKTDYPDYAI---TPENFAQTIEETKKRGEVVLALITYPDGNYG 154 (364)
T ss_dssp --TTC-EEEEETTCCH-HHHHHHHHTTCEEEE---ECCCCTTTCCC---CHHHHHHHHHHHTTTSCEEEEEEESSCTTTC
T ss_pred --CCc-EEEeeccccc-ccchHHHhccceEEE---eeecccccccc---CHHHHHhhhhhhcccCCceEEEeecCCCCCc
Confidence 455 7777777753 333333333321111 11100 01122 7999999997643 3567888888899999
Q ss_pred cccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcC
Q 012138 239 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQ 316 (470)
Q Consensus 239 ~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~ 316 (470)
.+.| +++|.++|++||+++|+|++|+ ++..+ .....++ .|++ +++|.++++- ++|++++++++++.+.
T Consensus 155 ~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~--~~~~~~g--~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~ 224 (364)
T d2e7ja1 155 NLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMP--VSLKEIG--ADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVL 224 (364)
T ss_dssp CCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBC--CCHHHHT--CSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTT
T ss_pred eeec----chhheeccccccchhhccccch-hhhhh--hcccccc--cceeeeccccccCCCC-CEEEEEECHHHHHHHH
Confidence 9998 9999999999999999999996 32221 1122233 3666 5559998665 7899999988877654
Q ss_pred cCCccC--------CCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce-eEEEE
Q 012138 317 PGEHGS--------TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVE 385 (470)
Q Consensus 317 ~~~~~~--------t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~-~~~~~ 385 (470)
...... ..........++.++++.+.+ +.+.+. .++.+++.+.|++++.. .+. ..+... ...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~---~~~-~~~~~~~~~~~~ 299 (364)
T d2e7ja1 225 RRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEKLGIK---QLG-DNPHNHDLMFFH 299 (364)
T ss_dssp CBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHTTCE---EES-SSSCCSSEEEEE
T ss_pred hhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCe---ecC-CCCCCcceEEEe
Confidence 221100 011122333344445554433 233333 34555666666664211 010 011111 11121
Q ss_pred eccCC-----CchhHHHHHHHHHHcCceec-cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 386 FDKTA-----LPVSAYDICLKMKERGILAK-PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 386 ~~~~~-----~~~~~~~~~~~l~~~Gv~~~-~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
..... .......+...+.++|+... ++....+|++ .+..|+|+|++++++|+++++ +.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~~-~y 363 (364)
T d2e7ja1 300 AEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEIIE-KY 363 (364)
T ss_dssp CHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred ccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHHHHHH-Hh
Confidence 11000 00112234556677777643 4556677776 356799999999999999998 64
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.88 E-value=4.5e-21 Score=189.76 Aligned_cols=335 Identities=11% Similarity=0.067 Sum_probs=198.3
Q ss_pred EeccCCcccccCCCCC--HHHHHHHHHHHHHc--c--ccCCCCCCCcHHHHHHHHhhhhC----CCeEE--ecCChhHHH
Q 012138 78 LDFLSAYSAVNQGHCH--PKIMKALQEQAEKL--T--LSSRAFYNDKFPVFAERLTSMFG----YDMVL--PMNTGAEGV 145 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~--~--~~~~~~~~~~~~~l~~~l~~~~~----~~~v~--~~~sGteA~ 145 (470)
||++.|....+.|..+ |.|.++........ . +.+..+..++++.+++++.+..+ .+.++ .+.++..++
T Consensus 32 InL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1yaaa_ 32 VDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL 111 (412)
T ss_dssp EECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred EEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence 6777664444555433 66777644333221 1 11122233445555555554433 22332 234444444
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..++...... .+|+ .|++.+|+|..........+..... .++.. .+.... +.+.+++.+.....++
T Consensus 112 ~~~~~~~~~~-------~~gd-~Vlip~P~~~~y~~~~~~~g~~~~~-~~~~~--~~~~~~---~~~~~~~~~~~~~~~~ 177 (412)
T d1yaaa_ 112 HISAKFFSKF-------FPDK-LVYLSKPTWANHMAIFENQGLKTAT-YPYWA--NETKSL---DLNGFLNAIQKAPEGS 177 (412)
T ss_dssp HHHHHHHHHH-------CTTC-CEEEEESCCTTHHHHHHTTTCCEEE-EECEE--TTTTEE---CHHHHHHHHHHSCTTC
T ss_pred HHHHHHHhcc-------CCCC-EEecccccCchhHHHHHHcCCceec-ccccc--cccccc---cchhhhcccccCCCce
Confidence 4444333221 1455 7888889987665554443332111 00000 001111 6788888887665567
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc-c------cccCCCCcc---eeeccccc
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-A------SDWEEVRPD---MVILGKAL 295 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~-~------~~~~~~~pd---i~s~sK~l 295 (470)
++++++++|||||.++ +++.+++|.++|++|++++|+||+|.+|.+.+... . ....+..+. +.++||.+
T Consensus 178 ~~i~i~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 256 (412)
T d1yaaa_ 178 IFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA 256 (412)
T ss_dssp EEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS
T ss_pred EEEEecCCCCCccccC-CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCcc
Confidence 7788777799999999 99999999999999999999999999987665321 0 111222222 23899999
Q ss_pred c-CCCcceeEEEecHHHHhhcCc-----------CCccCCCCCCHHHHHHHHHHHHHH------hh--hhHHHHHHHHHH
Q 012138 296 G-GGVIPVSAVLADKEVMLCIQP-----------GEHGSTFGGNPLASAVAIASLDVI------RD--EKLAERSAHLGE 355 (470)
Q Consensus 296 ~-gG~~~ig~v~~~~~~~~~~~~-----------~~~~~t~~~~~~~~aaa~a~l~~~------~~--~~~~~~~~~~~~ 355 (470)
+ .|+ |+||++++.++++.+.. .......+.+.+++.++...+..- .+ +.+++.++++++
T Consensus 257 ~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 335 (412)
T d1yaaa_ 257 GMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRH 335 (412)
T ss_dssp CCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcC-ceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 899 99999987654332211 112334456777777766655421 11 345556666777
Q ss_pred HHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCEEEEecCCCCCHHHHHHHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~ 434 (470)
.+.+.|++++.. ..+..+.++|.|+.| +.. + .+++++|++ .||.+.|+. ||++. ..++++|+.++
T Consensus 336 ~l~~~L~~~g~~--~~~~~~~~~gG~F~~-~~l-----s-~e~~~~L~~e~~V~~~~g~----Ris~~-g~~~~~i~~l~ 401 (412)
T d1yaaa_ 336 ALRDHLVKLGTP--GNWDHIVNQCGMFSF-TGL-----T-PQMVKRLEETHAVYLVASG----RASIA-GLNQGNVEYVA 401 (412)
T ss_dssp HHHHHHHHHTCS--SCCTHHHHCCSSEEE-CCC-----C-HHHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHH
T ss_pred HHHHHHHHhCCC--CCCceeCCCceEEEe-cCc-----C-HHHHHHHHHhCCEEECCCC----EEEec-cCCHHHHHHHH
Confidence 777777765432 113334566777766 332 2 345677755 499998864 88853 36778999999
Q ss_pred HHHHHHHh
Q 012138 435 KALHDVLE 442 (470)
Q Consensus 435 ~~l~~~l~ 442 (470)
++|.++++
T Consensus 402 ~ai~~v~k 409 (412)
T d1yaaa_ 402 KAIDEVVR 409 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.5e-22 Score=196.19 Aligned_cols=335 Identities=12% Similarity=0.025 Sum_probs=199.3
Q ss_pred EEeccCCcccccCCCC--CHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhC----CCe--EEecCChhHHH
Q 012138 77 YLDFLSAYSAVNQGHC--HPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFG----YDM--VLPMNTGAEGV 145 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~--v~~~~sGteA~ 145 (470)
.||++.|....+.|.. .|.|++++.+.++... +.+..+..++++.+++++.+..+ .+. ++.+.+|+.+.
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T d2q7wa1 28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence 3798888544455543 4788898888776542 22222344556666666665543 222 44566666666
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..++....... +++ .|++.+|+|..........+....... +.. .+.... +...+++...+...++
T Consensus 108 ~l~~~~l~~~~-------~gd-~Vlvp~P~y~~y~~~~~~~g~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~ 173 (396)
T d2q7wa1 108 RVAADFLAKNT-------SVK-RVWVSNPSWPNHKSVFNSAGLEVREYA-YYD--AENHTL---DFDALINSLNEAQAGD 173 (396)
T ss_dssp HHHHHHHHHHS-------CCC-EEEEEESCCTHHHHHHHHTTCEEEEEE-CEE--TTTTEE---CHHHHHHHHTTCCTTC
T ss_pred HHHHHHHhhcc-------cce-EEEEecCCCccchHHHHHcCCeeEecc-ccc--cccccc---ccchHHHHHHHhccCc
Confidence 66555443211 344 788889999776655544443221100 000 000111 5666666666555567
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc--c----ccCCCCcceeecccccc-CC
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA--S----DWEEVRPDMVILGKALG-GG 298 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~--~----~~~~~~pdi~s~sK~l~-gG 298 (470)
+++++..++||||.++ +.+.+++|.++|++|++++|+||+|.+|.+.+.... . +.......+.++||.++ .|
T Consensus 174 ~~i~~~~P~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G 252 (396)
T d2q7wa1 174 VVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYN 252 (396)
T ss_dssp EEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG
T ss_pred EEEEecCCcCCcCeec-CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccC
Confidence 7777666699999999 999999999999999999999999998866543211 1 11111223447889887 79
Q ss_pred CcceeEEEecHHHHhhcCcC------CccCCCC-CCHHHHHHHHHHHHH------Hhh--hhHHHHHHHHHHHHHHHHHH
Q 012138 299 VIPVSAVLADKEVMLCIQPG------EHGSTFG-GNPLASAVAIASLDV------IRD--EKLAERSAHLGEELRQHLFK 363 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~------~~~~t~~-~~~~~~aaa~a~l~~------~~~--~~~~~~~~~~~~~l~~~L~~ 363 (470)
+ |+||++++...++.+... ...+.+. .+..++.++.+.+.. +++ +.++++++++++.+.+.|++
T Consensus 253 ~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 331 (396)
T d2q7wa1 253 E-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE 331 (396)
T ss_dssp G-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred C-CccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 999999876655443221 1123333 455555554443321 111 33445566666777777766
Q ss_pred HHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 364 IQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 364 l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
++.. ..+..+...|.|+.| +.. + .+++++|++ .||.+.|++ ||+++ ..++++|++++++|.+++
T Consensus 332 ~~~~--~~~~~~~~~~G~F~~-~~l-----~-~e~~~~L~~e~gV~~~~g~----Ri~~a-~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 332 KGAN--RDFSFIIKQNGMFSF-SGL-----T-KEQVLRLREEFGVYAVASG----RVNVA-GMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp TTCC--SCCTHHHHCCSSEEE-CCC-----C-HHHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHC
T ss_pred hCCC--CCcceecCCCeEEEe-eCC-----C-HHHHHHHHHhCCEEECCCC----EEEec-CCCHHHHHHHHHHHHHhC
Confidence 5321 112222344445555 322 2 245666655 599988875 88854 357789999999998874
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.9e-21 Score=188.33 Aligned_cols=326 Identities=13% Similarity=0.156 Sum_probs=196.6
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC--CCC-------CCcHHHHHHHHhhhhCC--CeEEecCChhHHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR--AFY-------NDKFPVFAERLTSMFGY--DMVLPMNTGAEGV 145 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~-------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~ 145 (470)
|+|..+. +..+|.|++++.+.+........ ... .+..+++++.+++++|. ++|+|++|+|+++
T Consensus 5 YlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l 78 (391)
T d1p3wa_ 5 YLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 78 (391)
T ss_dssp ECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred EeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHH
Confidence 6676543 34789999999888764332111 111 12234566788888875 4799999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC-----CHHHHHHHHHh
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKE 220 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~Le~~l~~ 220 (470)
..++..+...... +|+ .|++.+..|++.......+.. .+.. +..++.+ |++++++++++
T Consensus 79 ~~~~~~~~~~~~~-----~gd-~Vv~~~~~~~s~~~~~~~~~~-~G~~---------v~~v~~~~~~~~d~~~~~~~i~~ 142 (391)
T d1p3wa_ 79 NLAIKGAANFYQK-----KGK-HIITSKTEHKAVLDTCRQLER-EGFE---------VTYLAPQRNGIIDLKELEAAMRD 142 (391)
T ss_dssp HHHHHHHHHHHGG-----GCC-EEEEETTSCHHHHHHHHHHHH-TTCE---------EEEECCCTTSCCCHHHHHHHCCT
T ss_pred HHHHhhhhhhhcC-----CCC-EEEEeccccchHHHHHHHHHH-cCCE---------EEEeCCCCCCeEcHHHHHHhCCC
Confidence 9988866532111 355 788888886543222111110 0111 1222221 78999998876
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCccee--eccccccCC
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGG 298 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG 298 (470)
+|++|+++.++|++|.+.| +++|.++|++||+++++|++|+ +|.. .+.+... .+|++ +..|.+ |+
T Consensus 143 ---~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~--~~d~~~~--~~D~~~~s~~k~~-g~ 209 (391)
T d1p3wa_ 143 ---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL--PIDLSQL--KVDLMSFSGHKIY-GP 209 (391)
T ss_dssp ---TEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTS--CCSEEEEESTTTT-SC
T ss_pred ---CcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc--cccchhc--ccccccccccccc-CC
Confidence 8999999999999999998 9999999999999999999997 2211 1223333 34655 445765 34
Q ss_pred CcceeEEEecHHHHhhcCcCCccCC-------CCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 299 VIPVSAVLADKEVMLCIQPGEHGST-------FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 299 ~~~ig~v~~~~~~~~~~~~~~~~~t-------~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
. .+|+++.+++......+...+.. .+.+.....+....++...+ ....++.+.+..++.++|..+...
T Consensus 210 ~-g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-- 286 (391)
T d1p3wa_ 210 K-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEV-- 286 (391)
T ss_dssp S-SCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTE--
T ss_pred C-ceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCe--
Confidence 3 67888888877666654433221 22333333333333333322 233445555555565555443211
Q ss_pred CceEEE--eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC-----------------------CCCEEEEecCCC
Q 012138 370 NYVKEV--RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-----------------------HDTIVRLTPPLS 424 (470)
Q Consensus 370 ~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------------------~~~~iR~~~~~~ 424 (470)
.+... .....+..+.+.. .....+...|.+ +.+..+ ..+.+|++++..
T Consensus 287 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~--i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~ 359 (391)
T d1p3wa_ 287 -YLNGDLEHGAPNILNVSFNY----VEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRF 359 (391)
T ss_dssp -EECSCTTTSCTTEEEEEETT----SCHHHHHHHTTT--EECBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTT
T ss_pred -eecccccccCceEEEEEeCC----CChHHHHHHhCC--CEEEccccccCCccchhHHHHHcCCCccccCCEEEEecCCC
Confidence 01111 1122233333332 256666666643 333211 025799999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCC
Q 012138 425 ISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 425 ~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
+|++||+++++.|+++++ ++++.
T Consensus 360 nt~edid~l~~~l~~~l~-~lr~~ 382 (391)
T d1p3wa_ 360 TTEEEIDYTIELVRKSIG-RLRDL 382 (391)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHHHS
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHh
Confidence 999999999999999999 87654
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.87 E-value=5.5e-20 Score=181.65 Aligned_cols=327 Identities=13% Similarity=0.137 Sum_probs=214.3
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC-------CCcHHHHHHHHhhhhCC---CeEEecCChhHHH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY-------NDKFPVFAERLTSMFGY---DMVLPMNTGAEGV 145 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~ 145 (470)
-|+|-.+. +..++.|.+++.+.++.....+.... .+..++..+.+++++|. +.+++++++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~ 97 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 97 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence 47776544 23678999999998876532221111 13345566778888875 4589999999999
Q ss_pred HHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCe
Q 012138 146 ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI 225 (470)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~ 225 (470)
..++........ ++|+ .|++.+..|++............+....+.+...+ ... +.+.+++++++ +|
T Consensus 98 n~~~~~~~~~~~-----~~g~-~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~-~~~---~~~~l~~~~~~---~t 164 (408)
T d1t3ia_ 98 NLVAYSWGMNNL-----KAGD-EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ-ESF---DLEHFKTLLSE---KT 164 (408)
T ss_dssp HHHHHHTHHHHC-----CTTC-EEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT-SSB---CHHHHHHHCCT---TE
T ss_pred HHHHhhcccccc-----CCCC-EEEeecccchhhhhhhhhhhhccCceEeeeecccc-ccc---cHHHhhhccCC---Cc
Confidence 887765332111 1344 67777767554433222111111111101111000 111 68888888765 89
Q ss_pred EEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc-cccccCCCCcceeecc--ccccCCCcce
Q 012138 226 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVRPDMVILG--KALGGGVIPV 302 (470)
Q Consensus 226 ~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~-~~~~~~~~~pdi~s~s--K~l~gG~~~i 302 (470)
++|.+..+++.+|.+.| +++|.++|+++|+++++|.+|+ + |.. +.+..+ .+|++++| |.+ |+. .+
T Consensus 165 ~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~---g~~~id~~~~--~~D~~~~s~hK~~-gp~-G~ 232 (408)
T d1t3ia_ 165 KLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-A---PHYPLDVQLI--DCDWLVASGHKMC-APT-GI 232 (408)
T ss_dssp EEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-T---TTSCCCHHHH--TCSEEEEEGGGTT-SCT-TC
T ss_pred eEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-c---cccccccccc--CCceEEecccccc-CCC-Cc
Confidence 99999999999999999 9999999999999999999998 2 211 123333 34777555 864 454 78
Q ss_pred eEEEecHHHHhhcCcCCccC---------------------CCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q 012138 303 SAVLADKEVMLCIQPGEHGS---------------------TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELR 358 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~---------------------t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~ 358 (470)
|+++.+++......+...+. ..+.+..+++++.++++.+.+ +++.++...+.+++.
T Consensus 233 g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~ 312 (408)
T d1t3ia_ 233 GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW 312 (408)
T ss_dssp EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHh
Confidence 99999999887665432221 123577777778888887665 556666777777776
Q ss_pred HHHHHHHhhCCCceEEE------eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccC------------CCCEEEEe
Q 012138 359 QHLFKIQQQFPNYVKEV------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------------HDTIVRLT 420 (470)
Q Consensus 359 ~~L~~l~~~~p~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------~~~~iR~~ 420 (470)
+.+.++. .+... ...+.++.+.++. .++.++.+.|.++||.++.+ ..+.+||+
T Consensus 313 ~~~~~~~-----~~~~~~~~~~~~~~~~iv~f~~~~----~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS 383 (408)
T d1t3ia_ 313 QGLGQIP-----QLRLYGPNPKHGDRAALASFNVAG----LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARAS 383 (408)
T ss_dssp HHHHTCT-----TEEEESCCGGGSCBCSEEEEEETT----BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEE
T ss_pred hhhccCc-----cccccCCCccccCcceEEEEEeCC----CCHHHHHHHHhhCCcEEecCcccccHHHHhhcCCccEEEE
Confidence 6665532 22221 1234556665543 36788999999999998753 25689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q 012138 421 PPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 421 ~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+...+|++||+++++.|+++++
T Consensus 384 ~~~ynt~~did~li~~L~~~~~ 405 (408)
T d1t3ia_ 384 LYFYNTKEEIDLFLQSLQATIR 405 (408)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.9e-21 Score=188.54 Aligned_cols=326 Identities=14% Similarity=0.032 Sum_probs=194.0
Q ss_pred EeccCCcccccCCC--CCHHHHHHHHHHHHHcc---ccCCCCCCCcHHHHHHHHhhhhCC---CeEEecCChhHHHHHHH
Q 012138 78 LDFLSAYSAVNQGH--CHPKIMKALQEQAEKLT---LSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETAL 149 (470)
Q Consensus 78 lD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~---~~v~~~~sGteA~~~al 149 (470)
||++.|..-.+.|. ..|.|.+|+.+.++... +.+..+..++++++++++.+..+. ...+.+.+|+.+...++
T Consensus 29 InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (394)
T d2ay1a_ 29 IDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQAL 108 (394)
T ss_dssp EECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHH
T ss_pred EEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHH
Confidence 46665533333443 34789999888876643 222223345566666666554432 34566666666665555
Q ss_pred HHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecC-------CCHHHHHHHHHhcC
Q 012138 150 KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESG 222 (470)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~Le~~l~~~~ 222 (470)
.+..... +++ .|+..+++|..........+... +.+++ .+.+++++......
T Consensus 109 ~~~~~~~-------~gd-~V~~p~p~~~~y~~~~~~~g~~~-------------v~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (394)
T d2ay1a_ 109 ELARMAN-------PDL-RVFVSDPTWPNHVSIMNFMGLPV-------------QTYRYFDAETRGVDFEGMKADLAAAK 167 (394)
T ss_dssp HHHHHHC-------TTC-CEEEEESCCHHHHHHHHHHTCCE-------------EEEECEETTTTEECHHHHHHHHHTCC
T ss_pred HHhhhcC-------Cce-EEEEecccccchHHHHHHcCCEE-------------EEecccchhcccccchhHHHHHhhcc
Confidence 4433211 444 78888888855444333333221 11111 14677777776655
Q ss_pred CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccc--c---ccCCC-Ccceeecccccc
Q 012138 223 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA--S---DWEEV-RPDMVILGKALG 296 (470)
Q Consensus 223 ~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~--~---~~~~~-~pdi~s~sK~l~ 296 (470)
.++.++++.+.+||||.++ +.+.+++|.++|++|++++|+||+|.+|.+.+.... . ...+. ...+.++||.++
T Consensus 168 ~~~~i~~~~~p~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 246 (394)
T d2ay1a_ 168 KGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG 246 (394)
T ss_dssp TTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT
T ss_pred cCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccccccccccc
Confidence 5677777766799999999 999999999999999999999999999876653210 0 00111 112348889887
Q ss_pred -CCCcceeEEEecHHHHhhcCcC------CccCCC-CCCHHHHHHHHHHHHH--H----hh--hhHHHHHHHHHHHHHHH
Q 012138 297 -GGVIPVSAVLADKEVMLCIQPG------EHGSTF-GGNPLASAVAIASLDV--I----RD--EKLAERSAHLGEELRQH 360 (470)
Q Consensus 297 -gG~~~ig~v~~~~~~~~~~~~~------~~~~t~-~~~~~~~aaa~a~l~~--~----~~--~~~~~~~~~~~~~l~~~ 360 (470)
.|+ |+|++++.....+..... .....+ ..+...++.+...+.. + .+ +.++++++++++.+.+.
T Consensus 247 ~~G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~ 325 (394)
T d2ay1a_ 247 IYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGE 325 (394)
T ss_dssp CGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-cccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 798 999999876544432211 111222 2333344333332221 1 11 34556666677777777
Q ss_pred HHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHH-cCceeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 361 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 361 L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
|++++... .+..+.++|.|+.| +.. + .+++++|++ .||.+.|+. ||+++ .+++++|+.++++|.+
T Consensus 326 L~~~~~~~--~~~~~~~~~G~F~~-~~l-----s-~~~~~~L~~~~~V~~~~g~----Ri~~a-~l~~~~i~~l~~ai~~ 391 (394)
T d2ay1a_ 326 LRDLSGSD--RFGFVAEHRGMFSR-LGA-----T-PEQVKRIKEEFGIYMVGDS----RINIA-GLNDNTIPILARAIIE 391 (394)
T ss_dssp HHHHHTSS--TTTHHHHCCSSEEE-CCC-----C-HHHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHhCCCC--ceeeECCCceeEEe-cCc-----C-HHHHHHHHHhCCEEecCCC----EEEec-CCCHHHHHHHHHHHHH
Confidence 77765321 12223455666666 332 2 345677764 599998873 88864 4678899999998887
Q ss_pred H
Q 012138 440 V 440 (470)
Q Consensus 440 ~ 440 (470)
+
T Consensus 392 v 392 (394)
T d2ay1a_ 392 V 392 (394)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=8.6e-22 Score=194.17 Aligned_cols=337 Identities=10% Similarity=-0.009 Sum_probs=191.7
Q ss_pred EeccCCcccccCCCCC--HHHHHHHHHHHHHc--c--ccCCCCCCCcHHHHHHHHhhhhC----CCeEEecCChhHHHHH
Q 012138 78 LDFLSAYSAVNQGHCH--PKIMKALQEQAEKL--T--LSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVET 147 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~--~--~~~~~~~~~~~~~l~~~l~~~~~----~~~v~~~~sGteA~~~ 147 (470)
||++.|....+.|..+ |.|.+|........ . +.+..+..++++++++++.+..+ .++++.+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 7888775555555443 56666644332211 1 12222233455666666655443 4677777766665444
Q ss_pred HHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCC-CeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 148 ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 148 al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
++.++... ... +|+ .|++.+|+|.+........+..... .+... +.... |.+++.+.+.....+++
T Consensus 109 ~l~~~~~~-~~~----pgd-~Vlv~~P~y~~y~~~~~~~G~~~~~----v~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 175 (397)
T d3tata_ 109 KVGADFLK-RYF----PES-GVWVSDPTWENHVAIFAGAGFEVST----YPWYDEATNGV---RFNDLLATLKTLPARSI 175 (397)
T ss_dssp HHHHHHHH-HHC----SSC-CCEECSSCCTTHHHHHHTTTCCCEE----CCCCCTTTSSC---CHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhh-hcC----CCC-cceecccCccccHHHHHHcCCEEEE----Eecchhhcccc---chHHHHHHhhhcccccE
Confidence 44433221 011 455 7888999997766555444432111 11111 11111 67777777765555677
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCcc--cc---ccCC-CCcceeecccccc-CCC
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML--AS---DWEE-VRPDMVILGKALG-GGV 299 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~--~~---~~~~-~~pdi~s~sK~l~-gG~ 299 (470)
++++...+||||.++ +.+.+++|.++|++||+++|+||+|.++.+.+... .. ...+ ...-+.++||.++ +|+
T Consensus 176 ~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~ 254 (397)
T d3tata_ 176 VLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE 254 (397)
T ss_dssp CEECSSSCSSSCCCC-CHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT
T ss_pred EEEecCCCCCCCeeC-CHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc
Confidence 777666799999999 99999999999999999999999999886554221 11 1111 1123458999988 798
Q ss_pred cceeEEEecHHHHhhcC-------cCCccCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhC---
Q 012138 300 IPVSAVLADKEVMLCIQ-------PGEHGSTFGGNPLASAVAIASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQF--- 368 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~-------~~~~~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~L~~l~~~~--- 368 (470)
|+||++++...++... ........+.+...++++...+..-. ...+.++++.+.+++++..+.+...+
T Consensus 255 -RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 333 (397)
T d3tata_ 255 -RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp -CCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred -cccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997654443221 11223333445555555544443211 12233444444444433333332221
Q ss_pred -CC-ceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc-CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 369 -PN-YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 369 -p~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
|+ .+..+...|.|+.| +.. + .+++++|+++ ||.+.|+. ||+++ ..++++|++++++|.+++
T Consensus 334 ~~~~~~~~~~~~~G~F~~-~~l-----s-~e~~~~L~~e~~V~l~~g~----Ri~~a-~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 334 MPERNFDYLLNQRGMFSY-TGL-----S-AAQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp CTTSCTTHHHHCCSSBCC-CCC-----C-HHHHHHHTTTTCEECCSSS----CCBTT-SCCTTTHHHHHHHHHHHC
T ss_pred CCCCceEEEcCCCceEEe-cCc-----C-HHHHHHHHHhCCEEeCCCC----EEEec-cCCHHHHHHHHHHHHHhC
Confidence 11 12222344445444 222 2 3457777665 99998874 88854 467889999999998874
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=6.2e-21 Score=185.64 Aligned_cols=288 Identities=11% Similarity=0.015 Sum_probs=172.9
Q ss_pred HHHHHHHhhhhC---CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 120 PVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 120 ~~l~~~l~~~~~---~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
.++.+...+.++ .+.+++++||++|+..++.++ . +++++|++.+...|.....++.+.+.
T Consensus 53 ~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al-~---------~~~~vi~~~~~~~~~~~~~~~~l~g~------- 115 (366)
T d2aeua1 53 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-K---------PKKVIHYLPELPGHPSIERSCKIVNA------- 115 (366)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-C---------CSEEEEECSSSSCCTHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh-C---------CCCEEEEecCCCcchhHHHHHHhcCC-------
Confidence 455555555553 457999999999999998764 2 35544444433336665555544432
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc--cC
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR--SG 274 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~--~G 274 (470)
..++++|+++|++++++ ++++|+++.++||.+ . +.+.+++|+++|++||+++|+||+|....+ .+
T Consensus 116 -------~~v~~~d~e~l~~~i~~---~tk~i~~~~p~n~~~--~-~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~ 182 (366)
T d2aeua1 116 -------KYFESDKVGEILNKIDK---DTLVIITGSTMDLKV--I-ELENFKKVINTAKNKEAIVFVDDASGARVRLLFN 182 (366)
T ss_dssp -------EEEEESCHHHHHTTCCT---TEEEEEECBCTTSCB--C-CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTT
T ss_pred -------eEECCCCHHHHHHhcCC---CceEEEEEecCCCCc--C-CHHHHHHHHHHhccCcEEEEEecCcccccccccc
Confidence 34556699999988876 899999887677632 2 444599999999999999999999973211 11
Q ss_pred CccccccCCCCccee--eccccccCCCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhH---HHH
Q 012138 275 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL---AER 349 (470)
Q Consensus 275 ~~~~~~~~~~~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~---~~~ 349 (470)
... ...++. |++ |++|++ +|+ ++|++++++++++.++......+++.+++.+.++.++|+.+.-..+ .++
T Consensus 183 ~~~-~~~~~~--di~~~S~sK~~-~g~-~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~ 257 (366)
T d2aeua1 183 QPP-ALKLGA--DLVVTSTDKLM-EGP-RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFER 257 (366)
T ss_dssp CCC-HHHHTC--SEEEEETTSSS-SSC-SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCC-HhhcCc--eEEEecccccc-ccc-ceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 112333 566 555655 467 9999999999999887655555566788888888888775432222 233
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceE-EEeccceeEEEEeccCCC---chhHHHHHHHHHHc-CceeccC-----CCCEEEE
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTAL---PVSAYDICLKMKER-GILAKPT-----HDTIVRL 419 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~-~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~-Gv~~~~~-----~~~~iR~ 419 (470)
.+.....+.+.+......++.... .....+.++.+.-..... ..+..+++.+|.++ ||.+.|+ +.+++||
T Consensus 258 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lRi 337 (366)
T d2aeua1 258 AKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRI 337 (366)
T ss_dssp HHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEE
T ss_pred HHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEEE
Confidence 333333344444443333222221 122233333332211110 12456788888766 9987654 4679999
Q ss_pred ecCCCCCHH-HHHHHHHHHHHHHh
Q 012138 420 TPPLSISSN-ELQEGSKALHDVLE 442 (470)
Q Consensus 420 ~~~~~~t~e-~i~~~~~~l~~~l~ 442 (470)
++....+++ +.+++++.|.+.++
T Consensus 338 s~~~~~~~~i~~d~l~~ai~~~lK 361 (366)
T d2aeua1 338 DLTSRDAERIDDNYIIKAIVESIK 361 (366)
T ss_dssp ETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred eccccchhhCCHHHHHHHHHHHHH
Confidence 965332221 23445555544443
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.3e-19 Score=177.84 Aligned_cols=319 Identities=17% Similarity=0.153 Sum_probs=203.7
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
-+|+|++++.... ..+-+. -..+...+..+.|+++++.+ .|+|+.|||+|+++++..... +++ .
T Consensus 30 ~~~~Vl~am~~~~--i~HRs~-~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~---------~~~-~ 96 (388)
T d1h0ca_ 30 LPPRIMAAGGLQM--IGSMSK-DMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLE---------PGD-S 96 (388)
T ss_dssp CCHHHHHHHTCCC--CCTTSH-HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC---------SSC-C
T ss_pred CCHHHHHHhCcCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhc---------cCC-c
Confidence 4688888763211 111111 11344677888899998763 488999999999999997754 455 4
Q ss_pred EEEEccCccccccchhcc-cCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhH
Q 012138 169 IVSCCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYL 247 (470)
Q Consensus 169 ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l 247 (470)
+++....+++........ .+........ +....+ |.+.+++.+... +++++.+....|.+|.+.| +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i 163 (388)
T d1h0ca_ 97 FLVGANGIWGQRAVDIGERIGARVHPMTK----DPGGHY---TLQEVEEGLAQH--KPVLLFLTHGESSTGVLQP----L 163 (388)
T ss_dssp EEECBSSHHHHHHHHHHHHHC--CBCCBC----CTTCCC---CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred eeeecccceeeeecccccccccccccccc----CCcccc---chHHHHHHhccC--CcceEEEeeeeeccccccC----H
Confidence 555444433332221111 1100000000 001111 677777777664 6778888888999999999 9
Q ss_pred HHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCC------
Q 012138 248 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE------ 319 (470)
Q Consensus 248 ~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~------ 319 (470)
++|.++|++||+++++|.+|+ +|. .....+.++ .|++++| |.++|.. .+|+++.++...+.+....
T Consensus 164 ~~i~~~~~~~g~~~~vD~~qs-~g~--~~~d~~~~~--~D~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T d1h0ca_ 164 DGFGELCHRYKCLLLVDSVAS-LGG--TPLYMDRQG--IDILYSGSQKALNAPP-GTSLISFSDKAKKKMYSRKTKPFSF 237 (388)
T ss_dssp TTHHHHHHTTTCEEEEECTTT-TTT--SCCCTTTTT--CSEEEEESSSTTCCCT-TCEEEEECHHHHHHHTTCSSCCSCS
T ss_pred HHHHHHhhcccccceeccccc-ccc--ccccccccc--cceecccccccccCCC-ceEEEeecHHHHHhhhhcccccccc
Confidence 999999999999999999998 211 112233334 4766555 8887654 6778888887766553211
Q ss_pred -----------------ccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe-cc
Q 012138 320 -----------------HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GR 378 (470)
Q Consensus 320 -----------------~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~-~~ 378 (470)
.....+.+.....+..++++.+.+ +.+.++.+++..++++.+..++... .+.... ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~--~~~~~~~rs 315 (388)
T d1h0ca_ 238 YLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQL--FVKDPALRL 315 (388)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB--SSCSGGGBC
T ss_pred ccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCccc--ccCCHHHcC
Confidence 111223566677777777877655 4566677777888888887764321 111111 12
Q ss_pred ceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEe-cCCCCCHHHHHHHHHHHHHHHhcccCCC
Q 012138 379 GLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLT-PPLSISSNELQEGSKALHDVLELDLPKM 448 (470)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~-~~~~~t~e~i~~~~~~l~~~l~~~~~~~ 448 (470)
..++.+.++.. .+..++.+.|.++ ||.+..+ .++.+|++ +...+|.|||++++++|+++|+ ++++.
T Consensus 316 ~~i~~~~~p~~---~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~-~l~k~ 387 (388)
T d1h0ca_ 316 PTVTTVAVPAG---YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQ-HCPKK 387 (388)
T ss_dssp TTEEEEECCTT---CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HSCCC
T ss_pred CeEEEEECCCC---CCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-Hhccc
Confidence 23455555433 3688899998776 9988765 36789998 6678899999999999999999 88764
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.83 E-value=7.9e-19 Score=172.99 Aligned_cols=331 Identities=18% Similarity=0.123 Sum_probs=208.5
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCC------CCCCCcHHHHHHHHhhhhCC--CeEEecCChhHH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSR------AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEG 144 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA 144 (470)
++..|+|..+. |..+..+.+++.+.+........ ....+..+++.+.+++++|. +.++|++++|++
T Consensus 26 ~~~iYLd~as~------g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~ 99 (404)
T d1qz9a_ 26 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 99 (404)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCCEEcCCccc------ccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence 35567776433 34567899999888765321110 01124566788899999874 579999999999
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
+..++.......... .+++.+|+.. ..++........... +..+.+. ......+++++++++++ +
T Consensus 100 ~~~~~~~~~~~~~~~---~~~~~vi~~~-~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~i~~---~ 164 (404)
T d1qz9a_ 100 LFKVLSAALRVQATR---SPERRVIVTE-TSNFPTDLYIAEGLA----DMLQQGY----TLRLVDSPEELPQAIDQ---D 164 (404)
T ss_dssp HHHHHHHHHHHHHHH---STTCCEEEEE-TTSCHHHHHHHHHHH----HHHCSSC----EEEEESSGGGHHHHCST---T
T ss_pred HHHHhhhhhhhhccc---CCCcEEEEec-cccchHHHHHHhhhh----eeeeece----eccccccchhHHHhcCC---C
Confidence 988776443211111 1355455544 343322211111100 0000010 11111267888888876 8
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCccee--eccccccCCCcc
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIP 301 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~ 301 (470)
|++|++..++|.+|.+.| +++|.++|+++|+++++|.+|+ |..+ ...+..+ +|.+ +..|.+.+|...
T Consensus 165 T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~~g~~~----~~~~~~~--~d~~~~s~~K~~~~~~g~ 234 (404)
T d1qz9a_ 165 TAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGAVP----VDLHQAG--ADYAIGCTYKYLNGGPGS 234 (404)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTSC----CCHHHHT--CSEEEECSSSTTCCCTTC
T ss_pred ceEEEEecccccccceec----HHHHhccccccccceeEEeeccccccc----ccccccc--ceEEEEechhhcccCCce
Confidence 999999999999999999 9999999999999999999998 2211 1233333 3554 444877644324
Q ss_pred eeEEEecHHHHhhcCcCCc-----------------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q 012138 302 VSAVLADKEVMLCIQPGEH-----------------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGE 355 (470)
Q Consensus 302 ig~v~~~~~~~~~~~~~~~-----------------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~ 355 (470)
.|+++.++++.+.+.+... ....+.+..+.....+.++.+.+ +.+.++...+..
T Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 314 (404)
T d1qz9a_ 235 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD 314 (404)
T ss_dssp CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred EEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Confidence 5677777776655432110 01123566666666666666554 456666666777
Q ss_pred HHHHHHHHHHhhCCCceEEE-----eccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCCCEEEEec-CCCCCHHH
Q 012138 356 ELRQHLFKIQQQFPNYVKEV-----RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP-PLSISSNE 429 (470)
Q Consensus 356 ~l~~~L~~l~~~~p~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~-~~~~t~e~ 429 (470)
.+...+..+.... .+..+ ...+.++.+.+. ++.++.+.|.++||.+....++.|||+| ++.+|++|
T Consensus 315 ~~~~l~~~~~~~~--~~~i~~p~~~~~r~~~vsf~~~------~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~d 386 (404)
T d1qz9a_ 315 LFIELVEQRCAAH--ELTLVTPREHAKRGSHVSFEHP------EGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTE 386 (404)
T ss_dssp HHHHHHHHHHTTS--CCEECSCSSGGGBCSEEEEECT------THHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHH
T ss_pred HHHHHHHhhccCC--CEEEECCCCccceeeEEEEecC------CHHHHHHHHHHCCCEEeecCCCeEEEECCCCCCCHHH
Confidence 6666665554431 23322 223556666443 4778999999999987655578999998 57899999
Q ss_pred HHHHHHHHHHHHh
Q 012138 430 LQEGSKALHDVLE 442 (470)
Q Consensus 430 i~~~~~~l~~~l~ 442 (470)
|++++++|+++|+
T Consensus 387 id~~~~~L~~vl~ 399 (404)
T d1qz9a_ 387 VWDAVQILGEILD 399 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=4.4e-20 Score=175.25 Aligned_cols=316 Identities=12% Similarity=0.064 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~i 169 (470)
+||+|++|+.++...... .....+..+++++++++++|. ++|+||+||||||..++..+.. +++ .+
T Consensus 12 ~~P~v~eAl~~~~~~~~~--~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~---------~~~-~~ 79 (340)
T d1svva_ 12 MHPKILDLMARDNMTQHA--GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR---------PWE-AV 79 (340)
T ss_dssp CCHHHHHHHHHHTTCCCC--STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC---------TTE-EE
T ss_pred CCHHHHHHHHHHhhcCCC--CCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh---------hcc-cc
Confidence 799999999887543322 112345567899999999975 4799999999999999987754 344 45
Q ss_pred EEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhh
Q 012138 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGY 246 (470)
Q Consensus 170 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~ 246 (470)
+.....++................. ..+ .... .+.+...++.... ......+++....+++|.+. +.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 151 (340)
T d1svva_ 80 IATQLGHISTHETGAIEATGHKVVT-APC---PDGK---LRVADIESALHENRSEHMVIPKLVYISNTTEVGTQY-TKQE 151 (340)
T ss_dssp EEETTSHHHHSSTTHHHHTTCCEEE-ECC---TTSC---CCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCC-CHHH
T ss_pred ccccccceeeeecccccccceeeee-ccc---cccc---ccchhHHHHhhhhhcccCCcceeeeecccccccccc-cHHH
Confidence 5554443322111111111110000 000 0001 1333333333321 12334444444466677777 7788
Q ss_pred HHHHHHHHHhcCcEEEEeccccCCc--ccCCccccccCCCCcceeeccccccCCCcceeEEEecHHHHhhcCcC--CccC
Q 012138 247 LKAVRDLCSKYNILMIADEIQSGLA--RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGS 322 (470)
Q Consensus 247 l~~l~~l~~~~gillI~Dev~~g~g--~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~v~~~~~~~~~~~~~--~~~~ 322 (470)
+..+.+.|+++|.++++|+++.+.. ..+..+.........++.++++..+.+....++.............. ....
T Consensus 152 ~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (340)
T d1svva_ 152 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGA 231 (340)
T ss_dssp HHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTC
T ss_pred hhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcccccC
Confidence 9999999999999999999998421 12111111111111234455555554331333333333332222211 1222
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHH
Q 012138 323 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM 402 (470)
Q Consensus 323 t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 402 (470)
+........+++.+.++........++...+..++.+.|++++.. ...++.+.++.+.++. .+.+.|
T Consensus 232 ~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-----~~~p~~~~~v~~~~~~--------~~~~~l 298 (340)
T d1svva_ 232 LMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIR-----LAWPSASNQLFPILEN--------TMIAEL 298 (340)
T ss_dssp CCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCC-----BSSCCSSSEECBEEEH--------HHHHHH
T ss_pred ccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcCCCe-----eecCCCceEEEEeCCH--------HHHHHH
Confidence 333334444444333332222445666667777777777765322 1113445555554432 344455
Q ss_pred HHc----CceeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 012138 403 KER----GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 440 (470)
Q Consensus 403 ~~~----Gv~~~~~~~~~iR~~~~~~~t~e~i~~~~~~l~~~ 440 (470)
.++ |+.+.+.+.+++||++++.+|+||||+++++|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 299 NNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp TTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred HHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 555 44455667889999999999999999999999863
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.4e-18 Score=168.50 Aligned_cols=295 Identities=13% Similarity=0.130 Sum_probs=184.0
Q ss_pred CCcHHHHHHHHhhhhCCC--e--EEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 116 NDKFPVFAERLTSMFGYD--M--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~--~--v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
.+..++..+.++++++.+ + +++++|||+++++++..+.. +++.+++.....|+..............
T Consensus 32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (361)
T d1m32a_ 32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG---------PQDKVLIVSNGAYGARMVEMAGLMGIAH 102 (361)
T ss_dssp TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC---------TTCCEEEEESSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh---------hccccceeeehhhhhhHHHHhhhhhccc
Confidence 466788999999998753 3 78889999999999876543 3555555554443222221111111111
Q ss_pred cccCCCCCCCCeeeecCC--CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 192 AIRGFGPLLPGHLKVDFG--DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~--d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
.. ...+.. .....+........+++.+.+..++|.+|.+.| +++|.++|++||+++++|.+|+
T Consensus 103 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs- 167 (361)
T d1m32a_ 103 HA----------YDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS- 167 (361)
T ss_dssp EE----------EECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-
T ss_pred cc----------ccccccCCccchhhHHHHHhccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-
Confidence 00 011000 112222222222347888888888999999999 9999999999999999999998
Q ss_pred CcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCc------------------cCCCCCCHH
Q 012138 270 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH------------------GSTFGGNPL 329 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~------------------~~t~~~~~~ 329 (470)
+|.. .+..+.+ ..|++++| |.+.|.. .+|+++.+++..+...+... ...++.+..
T Consensus 168 ~G~~--~~d~~~~--~~D~~~~s~~K~l~gp~-G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 242 (361)
T d1m32a_ 168 FGGI--PMDIAAL--HIDYLISSANKCIQGVP-GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTH 242 (361)
T ss_dssp TTTS--CCCTTTT--TCSEEEEESSSTTCCCS-SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHH
T ss_pred cCcc--ccccccc--ccceEEeeecccccCCC-CceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCch
Confidence 2111 1223333 45888776 8887765 78999999998877765422 123356666
Q ss_pred HHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHc
Q 012138 330 ASAVAIASLDVIRDEK----LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER 405 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 405 (470)
.+.+...++..+.++. ...+.+...+.+.+.++.++...+ .....+. ..+..+.++... ..+..++.+.|.++
T Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~rs-~~v~~~~~p~~~-~~~~~~~~~~l~~~ 319 (361)
T d1m32a_ 243 TVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTL-LDDELHS-PIITAFYSPEDP-QYRFSEFYRRLKEQ 319 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBS-SCGGGBC-SSEEEEECCCCT-TCCHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCccc-CChhhcC-CcEEEEECCCCC-CCCHHHHHHHHHHC
Confidence 7777777776655533 333444455555555555432211 0011112 233445443221 23678899999999
Q ss_pred CceeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 406 GILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 406 Gv~~~~~---~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|+.+.++ .++.+|++..-.++++||++++++|+++|-
T Consensus 320 gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~ 359 (361)
T d1m32a_ 320 GFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY 359 (361)
T ss_dssp TEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred CcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 9998754 367899985435799999999999999863
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.81 E-value=2.1e-19 Score=176.74 Aligned_cols=285 Identities=9% Similarity=-0.026 Sum_probs=176.7
Q ss_pred cHHHHHHHHhhhh---C-----CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCC
Q 012138 118 KFPVFAERLTSMF---G-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD 189 (470)
Q Consensus 118 ~~~~l~~~l~~~~---~-----~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~ 189 (470)
+..+|++.+++++ | ..+|++++|++|++++++.++.... ......|++ .||+..|.|......+..+.+.
T Consensus 101 ~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~-~~~~~~pg~-~Vv~~~P~y~~Y~~~~~~~~~~ 178 (425)
T d2hoxa1 101 ISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNM-TATPDAPES-KVVAHAPFYPVFREQTKYFDKK 178 (425)
T ss_dssp CCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCT-TTCTTSCCE-EEEECSSCCHHHHHHHHHSCBT
T ss_pred CCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhcccc-ccccCCCCC-EEEEecCccccHHHHHHHcCCC
Confidence 4568888888765 2 2359999999999999998774210 000011444 7888899886554333222221
Q ss_pred cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC
Q 012138 190 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 269 (470)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g 269 (470)
.+ .+.. |.+.++++++. +++++++..+|||+|.+.. +..+++.+|.||+|.+
T Consensus 179 -~~----------~~~~---D~~~~~~~~~~---~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DEaY~~ 230 (425)
T d2hoxa1 179 -GY----------VWAG---NAANYVNVSNP---EQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDMVYYW 230 (425)
T ss_dssp -TE----------EEEE---EGGGGTTCSCG---GGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEECTTCS
T ss_pred -CC----------ccCC---CHHHHHhhCCC---CceEEEEECCCCCCcchhh-----------hhhhCCEEEEeccccC
Confidence 11 1233 67777666655 6777664444999998752 2346899999999964
Q ss_pred CcccCCccccccCCCCcceeecccccc-CCCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh----
Q 012138 270 LARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---- 343 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~s~sK~l~-gG~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---- 343 (470)
..++... ....-..-+.||||.++ +|+ |+||+++ ++.+++.+......++++.+.+++.++.++|+....
T Consensus 231 ~~f~~~~---~~~~~~Ivl~S~SK~fglaGl-RiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~ 306 (425)
T d2hoxa1 231 PHYTPIK---YKADEDILLFTMSKFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKT 306 (425)
T ss_dssp TTTSCCC---SCBCCSEEEEEHHHHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchh---hhcCCeEEEEeCHHhccCcch-heeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHH
Confidence 3222110 11111112349999999 899 9999765 567777766555556777888888888888875321
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHh----hCCC------ceEEEeccceeEEEEeccCCCchhHHHHHHHHHH
Q 012138 344 ---------EKLAERSAHLGEELRQHLFKIQQ----QFPN------YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE 404 (470)
Q Consensus 344 ---------~~~~~~~~~~~~~l~~~L~~l~~----~~p~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (470)
+..++.++++.+++.+.|.+... .+|. ......+.+.|.++.+... ....+.+.|++
T Consensus 307 ~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~----~~~~~~~lL~e 382 (425)
T d2hoxa1 307 QKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----EDKDCYQTFQN 382 (425)
T ss_dssp HTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----GGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC----hHHHHHHHHHh
Confidence 11223333444444444433221 1110 0123345556666655332 22335566778
Q ss_pred cCceeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 405 RGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 405 ~Gv~~~~~-----~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+||++.|+ +++++||+ +..++|++++++++|+++++
T Consensus 383 ~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 383 GRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp TTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence 89999875 36899999 77899999999999999987
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.79 E-value=2.1e-18 Score=171.70 Aligned_cols=314 Identities=15% Similarity=0.145 Sum_probs=181.2
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc---
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA--- 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~--- 192 (470)
.+...+|++.+++++|.+.+++++||+.|+..++++..+ +|+ .|+... .|+..........+.+..
T Consensus 74 dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~---------~Gd-~Vi~~~-~f~~~~~~i~~~g~~~~~~~~ 142 (456)
T d1c7ga_ 74 SENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIK---------PGQ-YVAGNM-YFTTTRFHQEKNGATFVDIVR 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCC---------TTE-EEEESS-CCHHHHHHHHHTTEEEEECBC
T ss_pred CchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcC---------CCC-eEecCc-chHHHHHHHHHcCceeeeccc
Confidence 455789999999999999999999999999999997754 454 555432 232221111111110000
Q ss_pred ccCCCCCCCCeeeecC-CCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccC-
Q 012138 193 IRGFGPLLPGHLKVDF-GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG- 269 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g- 269 (470)
.....+.. ...+.. .|++.|+++|+++. ..+++++++..+|+.|-.+.+.+++++|.++|++||++++.|+++..
T Consensus 143 ~~~~~~~~--~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~ 220 (456)
T d1c7ga_ 143 DEAHDASL--NLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVE 220 (456)
T ss_dssp GGGGCTTC--CCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccccc--cCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhc
Confidence 00000000 001111 18999999998764 46778888877787544444999999999999999999999999861
Q ss_pred ---C------cccCCcc---ccccCCCCcceeecc--ccccCCCcceeEEEe-cHHHHhhcCcC----CccCCCC-CCHH
Q 012138 270 ---L------ARSGRML---ASDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPG----EHGSTFG-GNPL 329 (470)
Q Consensus 270 ---~------g~~G~~~---~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~----~~~~t~~-~~~~ 329 (470)
+ ++.+... .-+.++ ..|++++| |.++++ ..|+++. ++++.+..+.. ....+++ .+..
T Consensus 221 ~a~~~~~~~~~~~~~~i~~i~~~~~~-~ad~~s~s~~K~~~~~--~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~ 297 (456)
T d1c7ga_ 221 NAYFIKEQEAGYENVSIKDIVHEMFS-YADGCTMSGKKDCLVN--IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGR 297 (456)
T ss_dssp HHHHHHHHSTTCTTSCHHHHHHHHHT-TCSEEEEETTTTTCCS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHH
T ss_pred chhhhcccccccCCCChhhhcccccc-ccccEEEecccccccc--ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHH
Confidence 0 0011000 000111 23666554 655532 2344554 45565554321 1222333 3344
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-eeEEEEecc--CCC---chhHHHHHHHH-
Q 012138 330 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDK--TAL---PVSAYDICLKM- 402 (470)
Q Consensus 330 ~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g-~~~~~~~~~--~~~---~~~~~~~~~~l- 402 (470)
.+.++...+....+.+..++..++.++|.+.|.+.+. ..+.+.| ....+.... +.. ......+...+
T Consensus 298 ~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g~------~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~ 371 (456)
T d1c7ga_ 298 DMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGV------PIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIY 371 (456)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC------CBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccC------CcccCCCCcceeEechhhccCCCcccccHHHHHHHHH
Confidence 4444444455444455666666777888888887532 2222333 333332211 100 12345555555
Q ss_pred HHcCceeccC-----------------CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhcccCCCCCCC
Q 012138 403 KERGILAKPT-----------------HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMRKPK 452 (470)
Q Consensus 403 ~~~Gv~~~~~-----------------~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~ 452 (470)
.+.||...+. ....+||++| ...|+++||.++++|+++.+ +.+.+...+
T Consensus 372 ~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~-~~~~i~gl~ 438 (456)
T d1c7ga_ 372 METGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ-HKEDIRGLT 438 (456)
T ss_dssp HHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT-TGGGCCCEE
T ss_pred HHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh-hhhhcCCce
Confidence 4558864321 1346999987 45699999999999999998 776665444
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=2.9e-17 Score=160.13 Aligned_cols=329 Identities=15% Similarity=0.142 Sum_probs=191.9
Q ss_pred CeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCCC------CCcHHHHHHHHhhhhCC--CeEEecCChhHHHH
Q 012138 75 NKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFY------NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVE 146 (470)
Q Consensus 75 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~ 146 (470)
|-|+|..++ ++.++.|.+++.+.++.....+...+ .+..++..++++++++. ++|+|++|+|+++.
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~ 75 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESIN 75 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHH
Confidence 457776443 33678999999998876432222111 12234456778888875 47999999999999
Q ss_pred HHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeE
Q 012138 147 TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIA 226 (470)
Q Consensus 147 ~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~ 226 (470)
.++..+... .. +++++|+..... |+........-........+.|...+ ..+ |++++++++++ +|+
T Consensus 76 ~~~~~~~~~-~~-----~~g~~v~~~~~~-~~~~~~~~~~~~~~g~~v~~vp~~~~-~~i---d~~~l~~~i~~---~t~ 141 (376)
T d1eg5a_ 76 WILKTVAET-FE-----KRKRTIITTPIE-HKAVLETMKYLSMKGFKVKYVPVDSR-GVV---KLEELEKLVDE---DTF 141 (376)
T ss_dssp HHHHHHHHH-TT-----TTCCEEEECTTS-CHHHHHHHHHHHHTTCEEEECCBCTT-SCB---CHHHHHHHCCT---TEE
T ss_pred hhhhccccc-cc-----ccCccccccccc-chhhHHHHHHHHhcCCEEEEEcCCCC-CeE---CHHHHHHhcCC---Cce
Confidence 988754321 11 234356555544 33322222111001111111121111 122 78999999876 899
Q ss_pred EEEEccccCCCccccCChhhHHHHHHHHHhc--CcEEEEeccccCCcccCCccccccCCCCccee--eccccccCCCcce
Q 012138 227 GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPV 302 (470)
Q Consensus 227 ~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~--s~sK~l~gG~~~i 302 (470)
+|++..+++++|.+.| ++++.++|+.+ |+++++|.+|. +|.. ...+..+ .+|++ +..|.++ +. ..
T Consensus 142 lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~--~~d~~~~--~~D~~~~s~~K~~g-p~-G~ 210 (376)
T d1eg5a_ 142 LVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLEKL--EVDYASFSAHKFHG-PK-GV 210 (376)
T ss_dssp EEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCTTT--CCSEEEEEGGGGTS-CT-TC
T ss_pred EEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc--ccccccc--Cccceecccceeec-CC-Cc
Confidence 9999999999999998 99999988555 89999999997 2211 1222333 34655 6669865 33 55
Q ss_pred eEEEecHHHHhhcCcCCccCC-------CCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceE
Q 012138 303 SAVLADKEVMLCIQPGEHGST-------FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVK 373 (470)
Q Consensus 303 g~v~~~~~~~~~~~~~~~~~t-------~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~ 373 (470)
|+++.+++. .+++...+.+ ...+......+.+....... ............++.+.|....... ...
T Consensus 211 ~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 286 (376)
T d1eg5a_ 211 GITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHI--ITP 286 (376)
T ss_dssp EEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEE--CSC
T ss_pred eeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccc--ccc
Confidence 666666553 2333322211 12344554444444443322 2333444445555555554432110 000
Q ss_pred EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCC-----------------------CCEEEEecCCCCCHHHH
Q 012138 374 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----------------------DTIVRLTPPLSISSNEL 430 (470)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~~~~~~t~e~i 430 (470)
..........+.+.. ..+..+...|.++||.++++. .+++|+++...+|+|||
T Consensus 287 ~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edi 362 (376)
T d1eg5a_ 287 LEISLPNTLSVSFPN----IRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEV 362 (376)
T ss_dssp TTSBCTTEEEEECTT----CCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHH
T ss_pred ccccccceeeeccCC----CCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHH
Confidence 001112223332332 367888999999999886541 24699999999999999
Q ss_pred HHHHHHHHHHHh
Q 012138 431 QEGSKALHDVLE 442 (470)
Q Consensus 431 ~~~~~~l~~~l~ 442 (470)
|+++++|+++++
T Consensus 363 d~l~~~L~~iv~ 374 (376)
T d1eg5a_ 363 DYFLKKIEEILS 374 (376)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=8.6e-18 Score=163.85 Aligned_cols=309 Identities=14% Similarity=0.162 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEc
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 173 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~ 173 (470)
++-.+++.+.++...+.. .+...++++++++++|.+.+++++|||.|+.+|++++. .++|+ .|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~----G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~--------~~~gd-eVi~~~ 78 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGWITT----GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--------IGEGD-EVITPS 78 (376)
T ss_dssp HHHHHHHHHHHHHTCCSS----SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--------CCTTC-EEEEES
T ss_pred HHHHHHHHHHHhcCCCcC----CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhC--------CCCCC-EEEEec
Confidence 566788888888765443 34568999999999999999999999999999998652 12455 777787
Q ss_pred cCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHH
Q 012138 174 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 253 (470)
Q Consensus 174 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l 253 (470)
.+|+............+.+ ....++...+ |+++|++++++ +|++|++.+ ..|...+ +++|.++
T Consensus 79 ~~~~~~~~ai~~~g~~pv~----~d~~~~~~~~---d~~~l~~~i~~---~tkaIi~~h---~~G~~~~----~~~i~~i 141 (376)
T d1mdoa_ 79 MTWVSTLNMIVLLGANPVM----VDVDRDTLMV---TPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAIYAL 141 (376)
T ss_dssp SSCHHHHHHHHHTTCEEEE----ECBCTTTCCB---CHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHHHHH
T ss_pred ccccccccchhccccceee----ecccccccCC---CHHHHHHhcCC---CCeEEEEeC---CCCCccc----hhHHHHH
Confidence 7765444444433333322 2222222333 89999999986 799998654 4577777 9999999
Q ss_pred HHhcCcEEEEeccccCCc--ccCCccccccCCCCcceeecc--ccccCCCcceeEEEe-cHHHHhhcCcC----------
Q 012138 254 CSKYNILMIADEIQSGLA--RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPG---------- 318 (470)
Q Consensus 254 ~~~~gillI~Dev~~g~g--~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~-~~~~~~~~~~~---------- 318 (470)
|++||++||+|++|+ +| ..+... ..++. ...||. |.++.| ..|+++. ++++.+.++..
T Consensus 142 ~~~~~i~vIeD~a~a-~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~i~t~~~~l~~~~~~~~~~g~~~~~~ 214 (376)
T d1mdoa_ 142 GERYGIPVIEDAAHA-TGTSYKGRHI--GARGT--AIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAW 214 (376)
T ss_dssp HHHHTCCBCEECTTC-TTCEETTEET--TSSSE--EEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHhcCceEEeccchh-ccCeeCCeec--ccccC--ccccCCCcCCCCCC--CCCEEEEechhHHHHHHhhcccCCccccc
Confidence 999999999999998 32 122111 11221 234443 877755 3355554 55555544221
Q ss_pred --------------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh-CCCceEEEeccceeEE
Q 012138 319 --------------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKEVRGRGLFNA 383 (470)
Q Consensus 319 --------------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-~p~~~~~~~~~g~~~~ 383 (470)
..+..+..+.+.++.+...|+.+ +++.++.++..+++.+.|.++... .+.........-..+.
T Consensus 215 ~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 292 (376)
T d1mdoa_ 215 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFI 292 (376)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEE
T ss_pred ccccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccccccccccccccccccccc
Confidence 11334457788888887777655 346677788888888888764321 0000001111111222
Q ss_pred EEeccCCCchhHHHHHHHHHHcCceeccC-------------------------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 012138 384 VEFDKTALPVSAYDICLKMKERGILAKPT-------------------------HDTIVRLTPPLSISSNELQEGSKALH 438 (470)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------------------------~~~~iR~~~~~~~t~e~i~~~~~~l~ 438 (470)
..++........+++.+.|.++||-+... ..+.+.|-....+|++|++++++.|+
T Consensus 293 ~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~ 372 (376)
T d1mdoa_ 293 IRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALH 372 (376)
T ss_dssp EECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 22222110123568999999999976521 04557775566779999999999999
Q ss_pred HHH
Q 012138 439 DVL 441 (470)
Q Consensus 439 ~~l 441 (470)
+++
T Consensus 373 ~i~ 375 (376)
T d1mdoa_ 373 QIA 375 (376)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=6.4e-18 Score=168.66 Aligned_cols=308 Identities=11% Similarity=0.029 Sum_probs=188.9
Q ss_pred HHHHHHHhhhhCC---CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCC
Q 012138 120 PVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF 196 (470)
Q Consensus 120 ~~l~~~l~~~~~~---~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 196 (470)
.++.+++++++|. ...+++++|+++...++.++++.. . ++++.||+.... |.+...++...+........
T Consensus 97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~-~-----~~~~~vi~~~~~-H~s~~~a~~~~g~~~~~v~~ 169 (445)
T d3bc8a1 97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK-R-----PKAKYIIWPRID-QKSCFKSMVTAGFEPVVIEN 169 (445)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH-C-----TTCCEEEEECCC-CHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh-C-----CCCCEEEEcCcc-cHHHHHHHHHcCCeeEEEEe
Confidence 3456777777764 357888888876666555444321 1 234466665555 88777776665532211100
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcC-CCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC-cccC
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL-ARSG 274 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~-~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~-g~~G 274 (470)
.+ ..+...+ |+++|++++++.. .++++|++...++++|.+.| +++|.++|++||+++|+|++++++ ....
T Consensus 170 ~~-~~~~~~i---d~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~ 241 (445)
T d3bc8a1 170 VL-EGDELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCM 241 (445)
T ss_dssp EE-ETTEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred ec-cCccccc---CHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhcc
Confidence 00 0112333 8999999998754 36888888877999999998 999999999999999999999842 1111
Q ss_pred Cc--cccccCCCCcceeecc--ccccCCCcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhh---hhH
Q 012138 275 RM--LASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKL 346 (470)
Q Consensus 275 ~~--~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~ 346 (470)
+. ++....+ .|+++++ |.++++. ..|+++.+ +.+.+.+.....+...... ...+.+++..+.. ...
T Consensus 242 ~~~~~~~~~~~--vd~~~~s~hK~~~~p~-g~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~ 315 (445)
T d3bc8a1 242 HLIQQGARVGR--IDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGRASASP---SLDVLITLLSLGCSGYRKL 315 (445)
T ss_dssp HHHHHHHHHSC--CCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSCBCSHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccCcCC--cceEEecCccccccCC-CCceeeeCChHHHHHHHHHHhhcccCcc---hHHHHHHHHHHhhhcchhh
Confidence 11 1122222 3665554 8888765 66677654 5555554332222222222 2233333443333 445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCC--chhHHHHHHHHHHcCceec----cC--------
Q 012138 347 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGILAK----PT-------- 412 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~~~----~~-------- 412 (470)
.++...+.+++.+.|+++...++..+...........+.+..... ..+..++...|.+.||... +.
T Consensus 316 ~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~ 395 (445)
T d3bc8a1 316 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGH 395 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhh
Confidence 566777788888888887655432222333334444443332111 3466778888999887421 10
Q ss_pred ------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 012138 413 ------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 449 (470)
Q Consensus 413 ------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~ 449 (470)
....+|++++..+|+||||+++++|+++++ ++++.+
T Consensus 396 ~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk-~~rk~~ 443 (445)
T d3bc8a1 396 TFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN-IVRKEQ 443 (445)
T ss_dssp EEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHH-HHHhhh
Confidence 135699999999999999999999999999 876543
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.77 E-value=7.4e-18 Score=167.64 Aligned_cols=293 Identities=13% Similarity=0.106 Sum_probs=176.8
Q ss_pred HHHHHhhhhCCC-eEEec-CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCC
Q 012138 122 FAERLTSMFGYD-MVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL 199 (470)
Q Consensus 122 l~~~l~~~~~~~-~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 199 (470)
+..++.+.+|.+ ...++ .++++++.+++.+.+.. .+++.|++.... |.+...++...+.........+
T Consensus 118 ~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~--------~~~~~vi~s~~~-H~s~~k~~~~~g~~~~~v~~~~- 187 (434)
T d2z67a1 118 ILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK--------YGSNVVIYPYAS-HKSPIKAVSFVGMNMRLVETVL- 187 (434)
T ss_dssp HHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH--------HCCCEEEEECCC-CHHHHHHHHHTTCEEEEECCEE-
T ss_pred HHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh--------hcCceEEEeccC-CHHHHHHHHHhCCcceEEEeec-
Confidence 334556666654 34444 44555566666655542 133456655544 8776666655543221110000
Q ss_pred CCCeeeecCCCHHHHHHHHHhc--CCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCc-ccCCc
Q 012138 200 LPGHLKVDFGDITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA-RSGRM 276 (470)
Q Consensus 200 ~~~~~~~~~~d~~~Le~~l~~~--~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g-~~G~~ 276 (470)
..+...+ |+++|+++++++ .+++.+|+++..++++|.+.| +++|.++|++||+++|+|++|+++. ..+..
T Consensus 188 ~~~~~~~---d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~ 260 (434)
T d2z67a1 188 DGDRVYV---PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLEK 260 (434)
T ss_dssp ETTEEEC---CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred CCCccCC---CHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhcccc
Confidence 0111223 899999999864 246778888777888999998 9999999999999999999997431 11111
Q ss_pred cccccCCCCcceeecc--ccccCCCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 012138 277 LASDWEEVRPDMVILG--KALGGGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 353 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~ 353 (470)
. ........|+++++ |.++++. ..|+++ .++.+++.+.....+.+...+...+.++...+......++.++..++
T Consensus 261 ~-~~~~~~~~D~~~~s~hK~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~ 338 (434)
T d2z67a1 261 L-KKAFKYRVDAVVSSSDKNLLTPI-GGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNS 338 (434)
T ss_dssp H-HHHHTSCCSEEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cccccCCcceEEEcCccccccCC-CccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 0 01112234776555 9888665 666666 45666666654433333333333333333333322225577778888
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec----c-----------CCCCEEE
Q 012138 354 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----P-----------THDTIVR 418 (470)
Q Consensus 354 ~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~-----------~~~~~iR 418 (470)
.+++++.|+++.......+.. ......+.+ .... +..++...|.++||... + ...+++|
T Consensus 339 a~~l~~~L~~l~~~~g~~ll~-~~~~~~~~~--~~~~---~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~ 412 (434)
T d2z67a1 339 KKLLDELLNDLSKKTGGKFLD-VESPIASCI--SVNS---DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV 412 (434)
T ss_dssp HHHHHHHHHHHHHHSSCCBCC-CCCSSEEEE--ECSS---CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEE
T ss_pred HHHHHHHHHHhhhhcCceecC-CCCCceeee--ecCC---CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEE
Confidence 899999998886543211111 111222222 2222 67789999999998642 1 1257899
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q 012138 419 LTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 419 ~~~~~~~t~e~i~~~~~~l~~ 439 (470)
++.+..+|+||||+++++|++
T Consensus 413 ~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 413 MNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp EECCTTCCHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999986
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.76 E-value=2.1e-17 Score=160.92 Aligned_cols=312 Identities=15% Similarity=0.174 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
-+++|++++.... ..+.+. -..+..++..+.|+++++.+ .|+|++|||+++++++..+.. +++ .
T Consensus 29 v~~~Vl~am~~~~--~~hr~~-ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~---------~~~-~ 95 (377)
T d1vjoa_ 29 AHPSVLQAMNVSP--VGHLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE---------PGD-V 95 (377)
T ss_dssp CCHHHHHHHSSCC--CCTTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC---------TTC-E
T ss_pred CCHHHHHHhCcCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccc---------ccc-c
Confidence 4688877753211 111111 12345677788888888643 588889999999999987654 344 5
Q ss_pred EEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCC---CHHHHHHHHHhcCCCeEEEEEccccCCCccccCChh
Q 012138 169 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 245 (470)
Q Consensus 169 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~ 245 (470)
++.....+++............... ....+.+ +.+..+...... +++.+.+...+|.+|.+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~--- 161 (377)
T d1vjoa_ 96 VLIGVAGYFGNRLVDMAGRYGADVR---------TISKPWGEVFSLEELRTALETH--RPAILALVHAETSTGARQP--- 161 (377)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEE---------EEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---
T ss_pred cceeeechhhhhhhhhhhhhccccc---------ccccCCCCcccchhhhhhhhcC--cceeeeeeeeeccceeeec---
Confidence 5555545433322222111111100 0111111 345555444443 6677777777899999999
Q ss_pred hHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCCc---
Q 012138 246 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH--- 320 (470)
Q Consensus 246 ~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~~--- 320 (470)
++++.++|+++|+++++|.+|+ +|.. ...++.+ ..|+++++ |.++|+. .+|.++.++..++...+...
T Consensus 162 -i~~i~~~~~~~g~~~~vDa~~~-~g~~--~~~~~~~--~~d~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~ 234 (377)
T d1vjoa_ 162 -LEGVGELCREFGTLLLVDTVTS-LGGV--PIFLDAW--GVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVA 234 (377)
T ss_dssp -CTTHHHHHHHHTCEEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCS
T ss_pred -hhhhhhhhhhccceEEEecchh-hhhh--hhccccc--ccceeeecccccccCCC-EEEEecchhhHHhhhhccCCCCc
Confidence 9999999999999999999997 2211 1223334 44666555 6677665 67778888877765432211
Q ss_pred -----------------cCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccce
Q 012138 321 -----------------GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 380 (470)
Q Consensus 321 -----------------~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~ 380 (470)
......+...+.+..+++..+.+ +...++.+++..++.+.+.+...... ...-.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~rs~~ 312 (377)
T d1vjoa_ 235 NWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLH--VEKEYRLPT 312 (377)
T ss_dssp CSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCSS
T ss_pred ceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceee--cChHhcCCe
Confidence 11112344444444455554443 45566666677777777766432211 111011223
Q ss_pred eEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 012138 381 FNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~~-~~~~t~e~i~~~~~~l~~~l~ 442 (470)
+..+.+... .+..++.+.|.++ ||.+..+ .++.+|+++ ....|+|||++++++|+++|+
T Consensus 313 v~~~~~p~~---~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 313 LTTVCIPDG---VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp EEEEECCTT---CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCC---CCHHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 344544332 3688899988665 9998654 367899984 567789999999999999875
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=1.5e-17 Score=159.82 Aligned_cols=311 Identities=20% Similarity=0.180 Sum_probs=189.3
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCC--CeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII 169 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~i 169 (470)
-+|+|++++.+.. ..+.+. ...+...+..+.|+++++. +.++++.|||+|+++++..+.. ++++.+
T Consensus 11 v~~~V~~am~~~~--~~hr~~-~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~---------~g~~vl 78 (348)
T d1iuga_ 11 LHPKALEALARPQ--LHHRTE-AAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA---------PGERVL 78 (348)
T ss_dssp CCHHHHHHHHSCC--CCTTSH-HHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC---------TTCEEE
T ss_pred CCHHHHHHhcCCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc---------ccccce
Confidence 5688888865432 111111 1123456677777777764 4578899999999999987654 466455
Q ss_pred EEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHH
Q 012138 170 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA 249 (470)
Q Consensus 170 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~ 249 (470)
++..+.|..+........+.... ....++.+...+++. .. .+++.|++....+.+|.+.| +++
T Consensus 79 v~~~G~f~~~~~~~a~~~~~~~~----------~~~~~~g~~~~~~~~-~~--~~~~~v~~~h~eTstG~~~~----i~~ 141 (348)
T d1iuga_ 79 VPVYGKFSERFYEIALEAGLVVE----------RLDYPYGDTPRPEDV-AK--EGYAGLLLVHSETSTGALAD----LPA 141 (348)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEE----------EEECCTTCCCCTTTS-CC--SSCSEEEEESEETTTTEECC----HHH
T ss_pred eecchHHHHHHHHHHHhcCcccc----------cccccCCCccccccc-cc--cCCCeeEEEecchhhhhhcc----HHH
Confidence 55555553322221111111100 111121111111111 11 25667776666788999998 999
Q ss_pred HHHHHHhcC--cEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC-------
Q 012138 250 VRDLCSKYN--ILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG------- 318 (470)
Q Consensus 250 l~~l~~~~g--illI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~------- 318 (470)
|.++|++|+ .++++|.+++ +| .....++.+++ |++++| |+++|.- .+|.++.+++.++.+++.
T Consensus 142 i~~~~~~~~~~~l~~vDavss-~g--~~~i~~d~~~i--D~~~~~sqK~l~gpp-G~~~v~~s~~~le~~~~~~~~~dl~ 215 (348)
T d1iuga_ 142 LARAFKEKNPEGLVGADMVTS-LL--VGEVALEAMGV--DAAASGSQKGLMCPP-GLGFVALSPRALERLKPRGYYLDLA 215 (348)
T ss_dssp HHHHHHHHCTTCEEEEECTTT-BT--TBCCCSGGGTC--SEEEEESSSTTCCCS-CEEEEEECHHHHHTCCCCSSTTCHH
T ss_pred HHHHHHhhhccceeechhhhc-cc--ccccccccccC--CEEEeccccceecCC-ceeeeeechHHHhhhcccccccchh
Confidence 999999985 7899999987 22 11233555554 776555 9997654 778999999988877542
Q ss_pred -------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEeccC
Q 012138 319 -------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKT 389 (470)
Q Consensus 319 -------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~ 389 (470)
.....++++...+.+..++|+.+.++ ..++.+ ..+...+.++.+.... .+.... ....+..+.++..
T Consensus 216 ~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~--gl~~~~~~~s~~v~~~~~P~g 291 (348)
T d1iuga_ 216 RELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLA-LKAWQNALLYGVGEEG--GLRPVPKRFSPAVAAFYLPEG 291 (348)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHH-HHHHHHHHHHHHHHHT--TCEESCSSBCTTCEEEECCTT
T ss_pred hhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHhhhhhhh--hhccChhhcCCeEEEEECCCC
Confidence 12234456777888888889877553 222222 2222223333332221 122111 1223456655443
Q ss_pred CCchhHHHHHHHHHHcCceeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 390 ALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~Gv~~~~~~----~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.+..++.+.|.++|+.+.++. +..+||+..-..++++++.+++.|+++|+ ++
T Consensus 292 ---~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~-~~ 347 (348)
T d1iuga_ 292 ---VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE-EI 347 (348)
T ss_dssp ---CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred ---CCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 367889999999999988763 57899986667899999999999999998 65
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.75 E-value=5.6e-17 Score=158.64 Aligned_cols=313 Identities=15% Similarity=0.177 Sum_probs=188.1
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCC---eEEecCChhHHHHHHHHHHHHhchhcccCCCCCcE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI 168 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ 168 (470)
-+|+|++|+.+.. ..+.+. -..+...++.+.|+++++.+ .++++.|||+++++++..+.. +++.+
T Consensus 28 ~~~~V~~Am~~~~--~~hr~~-ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~---------~~~~v 95 (388)
T d2ch1a1 28 CSKRVLTAMTNTV--LSNFHA-ELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE---------EGDRV 95 (388)
T ss_dssp CCHHHHHHTTSCC--CCTTCH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC---------TTCEE
T ss_pred CCHHHHHHhCcCC--CCCCCH-HHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc---------ccccc
Confidence 4688888753221 111110 01344567778888888643 477788999999999987754 45544
Q ss_pred EEEEccCccccccchhc-ccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHhcCCCeEEEEEccccCCCccccCCh
Q 012138 169 IVSCCGCFHGRTLAAIS-MSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 244 (470)
Q Consensus 169 ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~ 244 (470)
++...+.| +....... .-+.... ....+. .+.+.+++.+... +++++.+....+.+|.+.|
T Consensus 96 l~~~~g~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~-- 160 (388)
T d2ch1a1 96 LIAVNGIW-AERAVEMSERYGADVR----------TIEGPPDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP-- 160 (388)
T ss_dssp EEEESSHH-HHHHHHHHHHTTCEEE----------EEECCTTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC--
T ss_pred cccccccc-cccchhhhhhhccccc----------ccccccccccchhhhhhhhccC--Ccceeeeeecccccccccc--
Confidence 55455443 22211111 1111110 011111 1566666666554 6778888788999999998
Q ss_pred hhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcCC---
Q 012138 245 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE--- 319 (470)
Q Consensus 245 ~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~~--- 319 (470)
++++.++|+++|+++++|.+|+ +| +..+..+.+ ..|++++| |+++|.. .+|.++.+++..+......
T Consensus 161 --~~~i~~~~~~~~~~~~vD~~ss-~g--~~pid~~~~--~~d~~~~s~~K~~~gp~-G~g~~~~~~~~~~~~~~~~~~~ 232 (388)
T d2ch1a1 161 --LEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMDKW--EIDAVYTGAQKVLGAPP-GITPISISPKALDVIRNRRTKS 232 (388)
T ss_dssp --CTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTTTT--TCCEEECCCC-CCCCCS-SCEEEEECHHHHHHHHTCSSCC
T ss_pred --hhhhcchhccccceeeeeeeec-cc--ccccchhcc--CceEEEEccccccCCCC-eEEEEeccHHHHHhhhcccCcc
Confidence 8999999999999999999998 21 222233434 44777776 6666554 6788888887666432210
Q ss_pred -------------------c-cCCCCCCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCceEEEe
Q 012138 320 -------------------H-GSTFGGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVR 376 (470)
Q Consensus 320 -------------------~-~~t~~~~~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~ 376 (470)
. ...++.+.....++..+++.+..... ..+.+.....++..+....... .+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 310 (388)
T d2ch1a1 233 KVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDI--FVKDPR 310 (388)
T ss_dssp SCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB--SSCSGG
T ss_pred ccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccccc--ccCCHH
Confidence 1 12234666677777777776655333 2233333333333333332111 111111
Q ss_pred c-cceeEEEEeccCCCchhHHHHHHHHHHc-CceeccC----CCCEEEEe-cCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 377 G-RGLFNAVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLT-PPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 377 ~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~----~~~~iR~~-~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. ...+..+.+... .++.++.+.|+++ ||.+.++ .++.+|++ +....|+|+|+.++++|+++|+ .+
T Consensus 311 ~rs~~v~~~~~p~g---~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~-~~ 382 (388)
T d2ch1a1 311 HRLPTVTGIMIPKG---VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK-AT 382 (388)
T ss_dssp GBCTTEEEEECCTT---CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HH
T ss_pred HhCCeEEEEECCCC---CCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHH-hh
Confidence 1 233455555443 3678899998776 9998865 36689999 5667789999999999999998 64
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=7.3e-17 Score=157.54 Aligned_cols=293 Identities=11% Similarity=0.041 Sum_probs=180.4
Q ss_pred HHHHHHHhhhhC------CCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhc-ccCCccc
Q 012138 120 PVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-MSCDNEA 192 (470)
Q Consensus 120 ~~l~~~l~~~~~------~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~-~~~~~~~ 192 (470)
.++.+.+.+.++ .+.++||+|||++++++++.+... ..+|+ .+++....+++....... ..+....
T Consensus 39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~------~~~gd-~vlv~~~~~~~~~~~~~~~~~~~~~~ 111 (382)
T d2bkwa1 39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS------KAPNK-NVLVVSTGTFSDRFADCLRSYGAQVD 111 (382)
T ss_dssp HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT------TCSCC-EEEEECSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHh------cCCCC-ceEEEEechhhhhhhhhccccccccc
Confidence 344444545443 356999999999999999866420 01456 555555554443322211 1111111
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcC--cEEEEeccccCC
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSGL 270 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~g--illI~Dev~~g~ 270 (470)
.....+ .... .+.+.+++++.+. +++++++..+.+.+|...| ++.+.++|++|+ +++++|.+|+ +
T Consensus 112 ~~~~~~---~~~~---~~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~ 178 (382)
T d2bkwa1 112 VVRPLK---IGES---VPLELITEKLSQN--SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-I 178 (382)
T ss_dssp EECCSS---TTSC---CCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-T
T ss_pred cccccC---CCCc---cchhHHHHHhhhc--cchheeeeecccccccccc----chhhhhhccccccceeeeeecccc-c
Confidence 000000 0001 1678888888764 6778888888999999998 999999888765 9999999998 2
Q ss_pred cccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCcC--------------------------CccC
Q 012138 271 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG--------------------------EHGS 322 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~~--------------------------~~~~ 322 (470)
| .....++.+++ |++++| |+++|.. .+|+++.++++.+...+. ....
T Consensus 179 g--~~pid~~~~gi--D~~~~s~~K~l~gP~-G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (382)
T d2bkwa1 179 G--CEEFEFDEWGV--DFALTASQKAIGAPA-GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAY 253 (382)
T ss_dssp T--TSCCCTTTTTC--SEEEEESSSTTCCCS-CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCC
T ss_pred c--cccccccccCe--eEEeecccccCcCCC-chhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccccccc
Confidence 1 12233444444 777666 8887665 889999999887655321 0122
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEE-e--ccceeEEEEeccCCCchhHH
Q 012138 323 TFGGNPLASAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEV-R--GRGLFNAVEFDKTALPVSAY 396 (470)
Q Consensus 323 t~~~~~~~~aaa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~--~~g~~~~~~~~~~~~~~~~~ 396 (470)
.++.+....++..++|+.+.++. ..++.+++.+++++.+.+..... .+... . ....+..+.+. +..
T Consensus 254 ~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~~s~~v~~~~~~------~~~ 325 (382)
T d2bkwa1 254 FATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLT--SVSRYPSNMSAHGLTAVYVA------DPP 325 (382)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCE--ESSCSSSTTBCSSCEEEECS------CHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccccc--ccccCchhccCCcEEEEcCC------CHH
Confidence 33577778888888999887643 44555566666666665421110 00000 0 11223344332 466
Q ss_pred HHHHHHHHcCceeccCC-----CCEEEEe-cCCCCCHHHHHHHHHHHHHHHhcccC
Q 012138 397 DICLKMKERGILAKPTH-----DTIVRLT-PPLSISSNELQEGSKALHDVLELDLP 446 (470)
Q Consensus 397 ~~~~~l~~~Gv~~~~~~-----~~~iR~~-~~~~~t~e~i~~~~~~l~~~l~~~~~ 446 (470)
++.+.|.++||.+..+. ++++|++ +....++|+++.+++.|+.+.. .++
T Consensus 326 ~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~-~L~ 380 (382)
T d2bkwa1 326 DVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL-ALQ 380 (382)
T ss_dssp HHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-HHC
Confidence 78899999999988652 4789998 5566677888888888876665 554
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.73 E-value=1.6e-16 Score=159.22 Aligned_cols=313 Identities=11% Similarity=-0.003 Sum_probs=180.8
Q ss_pred CCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHH-HHHHhchhcccCCCCCcEEEEEccCccccccc-hhcccCC-ccc
Q 012138 116 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALK-LARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCD-NEA 192 (470)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~-~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~-~~~~~~~-~~~ 192 (470)
.....++++.+++++|.++++|+++||.++..|+. ++.+ +|+ .||+...+ |.+... ...+.+. +.+
T Consensus 65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~---------~gd-~Vi~~~~~-H~Sv~~~~~~l~~~~~~~ 133 (462)
T d1c4ka2 65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVS---------NGD-LVLFDRNN-HKSVYNSALAMAGGRPVY 133 (462)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCC---------TTC-EEEEETTC-CHHHHHHHTTTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcC---------CCC-eEEecccc-hHHHHHHHHHHhcCCcee
Confidence 45678999999999999999999888877666544 4432 455 77777666 766654 3233222 111
Q ss_pred ccC-CCCCCCCeeeecCC--CHHHHHHHHHh------cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEE
Q 012138 193 IRG-FGPLLPGHLKVDFG--DITALEKIFKE------SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 263 (470)
Q Consensus 193 ~~~-~~~~~~~~~~~~~~--d~~~Le~~l~~------~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~ 263 (470)
... ..+. .....+.-. +.+.+++.+.. ...++..+++...+|..|.+.| +++|.++|++||++|++
T Consensus 134 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~v 208 (462)
T d1c4ka2 134 LQTNRNPY-GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEF 208 (462)
T ss_dssp ECEEECTT-CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEE
T ss_pred eecccccc-cccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEE
Confidence 110 0000 001111000 22333322211 1124555666666889999998 99999999999999999
Q ss_pred eccccC-CcccCCcc-c----cccCCC--Cccee--eccccccCCCcceeEEEecHHHHhhcCc----------CCccCC
Q 012138 264 DEIQSG-LARSGRML-A----SDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP----------GEHGST 323 (470)
Q Consensus 264 Dev~~g-~g~~G~~~-~----~~~~~~--~pdi~--s~sK~l~gG~~~ig~v~~~~~~~~~~~~----------~~~~~t 323 (470)
||+|+. +...+... . ....+. ..|++ |+.|.+++.- ..+.+..+......... .....+
T Consensus 209 D~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t 287 (462)
T d1c4ka2 209 DSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMS 287 (462)
T ss_dssp ECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSC
T ss_pred echhhccccccCcCCcchhhccccccccCCccEEEEecCccccccc-ceEEEEeccccccccchhhhHHHHHHhhhhccc
Confidence 999983 32221110 0 111111 23666 4558887432 22334344433221110 012234
Q ss_pred CCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCce-EEEe-----------------------
Q 012138 324 FGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYV-KEVR----------------------- 376 (470)
Q Consensus 324 ~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~-~~~~----------------------- 376 (470)
.+++...++...++...+.. +++.++..++..++++++.++...+.... ..+.
T Consensus 288 ~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 367 (462)
T d1c4ka2 288 TSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEK 367 (462)
T ss_dssp SSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCT
T ss_pred CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCC
Confidence 45677777777677766654 45667777888888888887542210000 0000
Q ss_pred -----------cccee-----EEEEecc--------CCCchhHHHHHHHHHHcCceeccCCCCEEEEecCCCCCHHHHHH
Q 012138 377 -----------GRGLF-----NAVEFDK--------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 432 (470)
Q Consensus 377 -----------~~g~~-----~~~~~~~--------~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~~~~~~t~e~i~~ 432 (470)
....+ +.+.... ...+..+..+.+.|+++||.+...+.+.+||.++..+|++++++
T Consensus 368 ~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~ 447 (462)
T d1c4ka2 368 GAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNN 447 (462)
T ss_dssp TCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHH
T ss_pred cchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHH
Confidence 00000 1111100 00023577889999999998776678899999999999999999
Q ss_pred HHHHHHHHHhcccC
Q 012138 433 GSKALHDVLELDLP 446 (470)
Q Consensus 433 ~~~~l~~~l~~~~~ 446 (470)
++++|.++.+ .++
T Consensus 448 li~aL~ei~r-~~~ 460 (462)
T d1c4ka2 448 LITQLLQLQR-LIE 460 (462)
T ss_dssp HHHHHHHHHH-HHH
T ss_pred HHHHHHHHHH-HHh
Confidence 9999999877 543
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=1.2e-16 Score=153.71 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=184.8
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|++.|+++.+.+.++.++||..|+.+++..+.+ +|+ .||+.+..|+|........-..
T Consensus 56 ~~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~---------~Gd-~vl~~~~~Yg~t~~l~~~~~~~---- 121 (392)
T d1gc0a_ 56 ISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLR---------PGD-EVLLGNTLYGCTFAFLHHGIGE---- 121 (392)
T ss_dssp -CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSCCSHHHHHHHHTGGG----
T ss_pred CCChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhcc---------CCC-eeecccccchhhhhhhhhhhcc----
Confidence 45677899999999999999999999999999999887755 466 8888888887654322111110
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
+.-.+.+++..|++++++++++ ++++|++|.+.||+..+.+ +++|+++|+++|+++++|..++.
T Consensus 122 -----~Gi~~~~~d~~d~~~~~~ai~~---~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at---- 185 (392)
T d1gc0a_ 122 -----FGVKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT---- 185 (392)
T ss_dssp -----GTCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH----
T ss_pred -----CCcccccCCccCHHHHHHhCCC---CCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCccC----
Confidence 0112345555688999999876 8999999999999999999 99999999999999999999862
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAE 348 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~ 348 (470)
... +..+....|++ +.+|.++| |-.-.|+++++++.+...+.. ........+|..+..+...|+.+.. ..+
T Consensus 186 P~~--~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~l--Rm~ 261 (392)
T d1gc0a_ 186 PYL--QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNL--RMD 261 (392)
T ss_dssp HHH--CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHH--HHH
T ss_pred ccc--cChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHHH--HHH
Confidence 111 22222234655 78899985 322667788888877654321 1112334678887777766655432 344
Q ss_pred HHHHHHHHHHHHHHHHHh----hCCC---------ceEEEeccceeEEEEeccCCCchhHHHHHHHHHH--cCceec---
Q 012138 349 RSAHLGEELRQHLFKIQQ----QFPN---------YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILAK--- 410 (470)
Q Consensus 349 ~~~~~~~~l~~~L~~l~~----~~p~---------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~~~--- 410 (470)
+..+++..+.+.|++... .||. ......+.|.++.+++..+. .....|++.|+- .+....
T Consensus 262 ~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~--~~~~~f~~~L~l~~~a~SlGg~e 339 (392)
T d1gc0a_ 262 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGI--GAGRRFMNALQLFSRAVSLGDAE 339 (392)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHH--HHHHHHHHHCSSSEECSCCSCSS
T ss_pred HHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCH--HHHHHHHHhCCcceEeeccCCcC
Confidence 444555555555554211 1110 01122344778888775321 234556665531 122111
Q ss_pred -----cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 -----PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 -----~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
|. .++.|||++.+ |+.+++++-|+++|+
T Consensus 340 SLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 340 SLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL----EDIDDLLADVQQALK 389 (392)
T ss_dssp CEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred hhhcCccccccccCCHHHHHHcCCCcCeEEEEeee----CCHHHHHHHHHHHHH
Confidence 10 25789999654 666777777777765
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=5.8e-16 Score=153.53 Aligned_cols=347 Identities=10% Similarity=-0.009 Sum_probs=209.3
Q ss_pred CCCeEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCCC--CCCcHHHHHHHHhhhhCCC-------eEEecCChhH
Q 012138 73 EGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD-------MVLPMNTGAE 143 (470)
Q Consensus 73 ~G~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~-------~v~~~~sGte 143 (470)
||+.-+++.+.... +-+|++.+.+.+.+++-......+ ..+...++.++|+++++.. .-.+|+|||+
T Consensus 51 dg~~~~n~asf~~t----~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSe 126 (450)
T d1pmma_ 51 DGNARQNLATFCQT----WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSE 126 (450)
T ss_dssp SCCGGGBCSCCSCC----CCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHH
T ss_pred CCCccccccccccC----CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHH
Confidence 44433455554322 246888888777665433222212 1234556777888888642 1489999999
Q ss_pred HHHHHHHHHHHhchhcc---cCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHh
Q 012138 144 GVETALKLARKWGYVKK---KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE 220 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~---~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~ 220 (470)
|+..++.+++..+..++ +. +.+..+++.. ..|.+...+..+.+-.... .+..++...+ |+++|++++++
T Consensus 127 A~~~a~~aar~~~~~~~~~~g~-~~~~~~~~~~-~~H~s~~Kaa~~~gi~~~~---v~~~~~~~~~---d~~~L~~~i~~ 198 (450)
T d1pmma_ 127 ACMLGGMAMKWRWRKRMEAAGK-PTDKPNLVCG-PVQICWHKFARYWDVELRE---IPMRPGQLFM---DPKRMIEACDE 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-CCSCCEEEES-SCCHHHHHHHHHTTCEEEE---CCCBTTBCSC---CHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHhhhcCC-CCCCceEEec-ccHHHHHHHHHHcCCCceE---eeecCCCCcC---cHHHHHHHhhh
Confidence 99999998876332221 22 2333455444 4477666555554432211 2222222333 89999999987
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHH------HHhcCcEEEEeccccCCcc----cCCccccccCCCCcceee
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL------CSKYNILMIADEIQSGLAR----SGRMLASDWEEVRPDMVI 290 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l------~~~~gillI~Dev~~g~g~----~G~~~~~~~~~~~pdi~s 290 (470)
++.+|++....+.+|.+-| +++|.++ |+++|+++++|.+++|+.. ....+.+... ..|.++
T Consensus 199 ---~t~~Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~--~aDSi~ 269 (450)
T d1pmma_ 199 ---NTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLP--RVKSIS 269 (450)
T ss_dssp ---TEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTST--TEEEEE
T ss_pred ---CceEEEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhccc--ceeEee
Confidence 7888887777899999996 6655555 5678999999999987521 1111111111 246666
Q ss_pred cc--ccccCCCcceeEEEecHHHH-hh-cC--c----C---CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q 012138 291 LG--KALGGGVIPVSAVLADKEVM-LC-IQ--P----G---EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLG 354 (470)
Q Consensus 291 ~s--K~l~gG~~~ig~v~~~~~~~-~~-~~--~----~---~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~ 354 (470)
++ |.+.+.+ .+|+++.++... .. +. + + .....++-+........+.+..+.. .++.++..+++
T Consensus 270 ~s~HK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la 348 (450)
T d1pmma_ 270 ASGHKFGLAPL-GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 348 (450)
T ss_dssp EETTTTTCCCS-SCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhccCCCC-CeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 66 7666666 889999865422 11 10 0 0 0111222333444445556665554 44566667777
Q ss_pred HHHHHHHHHHHhhCCCceEEE-e--cc--ceeEEEEeccCCC-chhHHHHHHHHHHcCceec----cC---CCCEEEEec
Q 012138 355 EELRQHLFKIQQQFPNYVKEV-R--GR--GLFNAVEFDKTAL-PVSAYDICLKMKERGILAK----PT---HDTIVRLTP 421 (470)
Q Consensus 355 ~~l~~~L~~l~~~~p~~~~~~-~--~~--g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~----~~---~~~~iR~~~ 421 (470)
++|.+.|++.. .+..+ . +. -..+.|.+..... ..+..++.++|+++|..+. |. ....+|+.+
T Consensus 349 ~~l~~~L~~~~-----~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv 423 (450)
T d1pmma_ 349 AYLADEIAKLG-----PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMC 423 (450)
T ss_dssp HHHHHHHHTTS-----CEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEEC
T ss_pred HHHHHHHHhCC-----CeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEc
Confidence 77777776642 22222 1 11 2245565543321 3467789999999997763 22 245799998
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcccCC
Q 012138 422 PLSISSNELQEGSKALHDVLELDLPK 447 (470)
Q Consensus 422 ~~~~t~e~i~~~~~~l~~~l~~~~~~ 447 (470)
.-..|+++++++++.|+++++ ++++
T Consensus 424 ~~~~t~e~~d~lv~dl~~~v~-~l~~ 448 (450)
T d1pmma_ 424 RRGFEMDFAELLLEDYKASLK-YLSD 448 (450)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence 888999999999999999998 7754
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.72 E-value=8e-17 Score=157.22 Aligned_cols=315 Identities=15% Similarity=0.138 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEE
Q 012138 92 CHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS 171 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~ 171 (470)
-..+-.+++.+.+++..... ...+...++++++++++|.+.++.++|||.|+++|++.+- .++|+ .|++
T Consensus 11 ~~~~~~~~~~~~l~~g~~~~--~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~--------~~~gd-eVi~ 79 (384)
T d1b9ha_ 11 YDDAERNGLVRALEQGQWWR--MGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG--------VGPGT-EVIV 79 (384)
T ss_dssp CCHHHHHHHHHHHHTSCCBT--TTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--------CCTTC-EEEE
T ss_pred CCHHHHHHHHHHHHcCCeee--cCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC--------CCCCC-EEEE
Confidence 34566788888888764311 1245678999999999999999999999999999998652 12465 6777
Q ss_pred EccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHH
Q 012138 172 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 251 (470)
Q Consensus 172 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~ 251 (470)
...+|.............+.+ ....+....+ |++.+++.+.. ++++|++.. ..|...+ +.++.
T Consensus 80 p~~t~~a~~~ai~~~g~~p~~----~d~~~~~~~~---d~~~~~~~i~~---~tk~i~~~~---~~g~~~d----~~~i~ 142 (384)
T d1b9ha_ 80 PAFTFISSSQAAQRLGAVTVP----VDVDAATYNL---DPEAVAAAVTP---RTKVIMPVH---MAGLMAD----MDALA 142 (384)
T ss_dssp ESSSCTHHHHHHHHTTCEEEE----ECBCTTTCCB---CHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHHH
T ss_pred ecccccccccccccccccccc----cccccccccc---chhhhcccccc---ccccccccc---ccccccc----cccch
Confidence 777764433333333332222 1222222233 89999988876 899988654 3455665 99999
Q ss_pred HHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeec--cccccCCCcceeEEEe-cHHHHhhcCcC---------
Q 012138 252 DLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLA-DKEVMLCIQPG--------- 318 (470)
Q Consensus 252 ~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~--sK~l~gG~~~ig~v~~-~~~~~~~~~~~--------- 318 (470)
++|++||++||.|.+|+ |--..|+.. ..+| ...+.|| +|.++.| ..|+++. ++++.+.++..
T Consensus 143 ~~~~~~~i~lieD~a~a~ga~~~g~~~--g~~g-~~~~~Sf~~~K~i~~g--~GG~i~t~~~~~~~~~~~~~~~g~~~~~ 217 (384)
T d1b9ha_ 143 KISADTGVPLLQDAAHAHGARWQGKRV--GELD-SIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETAFLRHSCGRPR 217 (384)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEEG--GGSS-SCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHHHHHTBTTCCT
T ss_pred hhhhhhhhhhhhhhceecccccCCEec--Cccc-ccceeccccccccccc--ccchhhhhhHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999998 321223221 1122 1123344 4777755 3455554 45554443211
Q ss_pred --------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceE--EEeccceeEEEEecc
Q 012138 319 --------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGRGLFNAVEFDK 388 (470)
Q Consensus 319 --------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~--~~~~~g~~~~~~~~~ 388 (470)
..|..+..+.+.++.+...|+.+ +++.++.+++.+++.+.|.++....+.... .......++.+.+..
T Consensus 218 ~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (384)
T d1b9ha_ 218 DDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG 295 (384)
T ss_dssp TCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred ccccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecc
Confidence 12344557888888888777655 346667777788888877664221100000 011112233333322
Q ss_pred CCCchhHHHHHHHHHHcCceeccCC---------------------------------CCEEEEecCCCCC-HHHHHHHH
Q 012138 389 TALPVSAYDICLKMKERGILAKPTH---------------------------------DTIVRLTPPLSIS-SNELQEGS 434 (470)
Q Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~---------------------------------~~~iR~~~~~~~t-~e~i~~~~ 434 (470)
.. ....+.+.+.|.++||-+.+.. .+.+.|-....+| ++|++..+
T Consensus 296 ~~-~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~ 374 (384)
T d1b9ha_ 296 LT-EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATA 374 (384)
T ss_dssp CC-HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHH
T ss_pred cc-cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHH
Confidence 11 2345679999999999764221 2446665444556 67999999
Q ss_pred HHHHHHHh
Q 012138 435 KALHDVLE 442 (470)
Q Consensus 435 ~~l~~~l~ 442 (470)
+.|++++.
T Consensus 375 ~~i~~~l~ 382 (384)
T d1b9ha_ 375 EIIADAVA 382 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999987
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.71 E-value=3.7e-16 Score=150.26 Aligned_cols=290 Identities=12% Similarity=0.115 Sum_probs=183.1
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
...++....|++.|+++.+.+..+.++||..|+.+++..+.+ +|+ .||+....|.+........-.
T Consensus 59 R~~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~---------~Gd-~vi~~~~~Yg~t~~~~~~~l~---- 124 (397)
T d1y4ia1 59 RLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQ---------QGD-HIVSASAIYGCTHAFLSHSMP---- 124 (397)
T ss_dssp TTSCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESSSCHHHHHHHHTHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccC---------CCC-eeeeecccccccchhhhcccC----
Confidence 345778999999999999999999999999999999877755 566 788888887554322111000
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 272 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~ 272 (470)
.+.-.+..+...|++.++++++. ++++|++|.+.||+..+.+ +++|.++|+++|+++++|...+.-
T Consensus 125 -----~~Gi~~~~vd~~d~~~~~~~i~~---~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~atP-- 190 (397)
T d1y4ia1 125 -----KFGINVRFVDAGKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP-- 190 (397)
T ss_dssp -----HTTCEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT--
T ss_pred -----CCceEeeccCCCCHHHHHHhcCC---CCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcccCc--
Confidence 00112456666689999999875 8999999999999999998 999999999999999999987621
Q ss_pred cCCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcC--cCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 273 SGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQ--PGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 273 ~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~--~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
-. +.....-.|++ +++|.++| +=.-.|+++++++.+...+ .......-..+|..+..+...|+.+.- .+
T Consensus 191 --~~--~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~l--Rm 264 (397)
T d1y4ia1 191 --YC--QQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGI--RM 264 (397)
T ss_dssp --TT--CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHHH--HH
T ss_pred --cc--CcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHHH--HH
Confidence 11 22222233655 78899985 2225667788887765432 111112233678888777666654432 33
Q ss_pred HHHHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHc--Ccee---
Q 012138 348 ERSAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GILA--- 409 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~~--- 409 (470)
++..+++..+.+.|++... .||... ....+.|.++.+++.... ..+.+|++.|.-- ++..
T Consensus 265 ~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~--~~~~~f~~~L~l~~~a~SlGg~ 342 (397)
T d1y4ia1 265 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL--EAGRRMINSVELCLLAVSLGDT 342 (397)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHHTCSSSEECSCCSCS
T ss_pred HHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCH--HHHHHHHHcCCccceeeccCcc
Confidence 4444555555555554211 111000 011235788888775421 1234555544311 1111
Q ss_pred -----ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 410 -----KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 410 -----~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.|. .++.|||++.+ |+++++++-|+++|+
T Consensus 343 eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl----Ed~~DLi~Dl~~AL~ 393 (397)
T d1y4ia1 343 ETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL----EDPEDIINDLEHAIR 393 (397)
T ss_dssp SCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred cceeeCccccccccCCHHHHHHcCCCcCEEEEEecc----CCHHHHHHHHHHHHH
Confidence 111 25789999655 556666666666665
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3.3e-16 Score=150.33 Aligned_cols=291 Identities=16% Similarity=0.142 Sum_probs=181.5
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|+++|+++.|.+.++.++||..|+..++..+.+ +|+ .|++.+..|.+..........
T Consensus 47 ~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~---------~gd-~vv~~~~~yg~t~~~~~~~~~----- 111 (384)
T d1cs1a_ 47 RGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLK---------PGD-LLVAPHDCYGGSYRLFDSLAK----- 111 (384)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEETTCCHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhccc---------ccc-eecccccccchhhhhhhhhhc-----
Confidence 45778899999999999999999999999999999887654 455 777777776443222111110
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
.....+.++...|.+++++++.. ++++|++|.+.||+..+.+ +++|.++|+++|+++|+|...+..
T Consensus 112 ----~~g~~~~~~d~~d~~~~~~~~~~---~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~atP--- 177 (384)
T d1cs1a_ 112 ----RGCYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSP--- 177 (384)
T ss_dssp ----TTSCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT---
T ss_pred ----ccccccccccCCCHHHHHhhccc---cccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEeccccCc---
Confidence 00112345555689999999987 8999999999999999999 999999999999999999997521
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEe-cHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
-. +.....-.|++ +.+|.++| |=.-.|++++ ++++.+.+...........+|..+..+...|+-+. -.+++
T Consensus 178 -~~--~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~--lRm~~ 252 (384)
T d1cs1a_ 178 -AL--QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMEL 252 (384)
T ss_dssp -TT--CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred -cc--ccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhH--HHHHH
Confidence 11 22222234665 88899985 3224565666 45554544332222223467777777666655442 23344
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHHHc--Cce------
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GIL------ 408 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gv~------ 408 (470)
..+++..+.+.|+.... .||... ....+.|.++.+++.... ..+.+|++.|.-- ++.
T Consensus 253 ~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~--~~a~~f~~~L~l~~~a~SlGg~eS 330 (384)
T d1cs1a_ 253 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE--QTLRRFLGGLSLFTLAESLGGVES 330 (384)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCH--HHHHHHHHTCSSSEEBSCCCSSSC
T ss_pred HHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchH--HHHHHHHHhCCcceeccccCCccc
Confidence 44555555555544211 111000 011234778888775432 2344555554311 111
Q ss_pred --eccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 409 --AKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 409 --~~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
+.|. .++.|||++.+ |+++++++-|+++|+ .+
T Consensus 331 Li~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----Ed~eDLi~Dl~~AL~-aa 381 (384)
T d1cs1a_ 331 LISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFR-AA 381 (384)
T ss_dssp EEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHHHHHHHH-HH
T ss_pred eeccccccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHH-Hh
Confidence 1010 25789999554 667777777877776 54
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.70 E-value=8.3e-16 Score=148.04 Aligned_cols=290 Identities=17% Similarity=0.198 Sum_probs=183.3
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|+++|+++.|.+.++.++||..|+..++..+.+ +|+ .||+....|.+........-..
T Consensus 64 ~~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~---------~Gd-~iv~~~~~Yg~t~~l~~~~~~~---- 129 (398)
T d1qgna_ 64 YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVP---------AGG-HIVTTTDCYRKTRIFIETILPK---- 129 (398)
T ss_dssp GCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSC---------SSC-EEEEETTSCHHHHHHHHHTGGG----
T ss_pred CCChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhccc---------ccc-cccccccccchhhhhhcccccc----
Confidence 45778899999999999999999999999999999886654 455 7888888875543222111100
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
++ -....+...+.++.++.+.. +++++|++|.+.||+..+.+ +++|.++|+++|+++|+|...+..
T Consensus 130 --~g---i~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~atP--- 195 (398)
T d1qgna_ 130 --MG---ITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP--- 195 (398)
T ss_dssp --GT---CEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT---
T ss_pred --cc---cccccccccchhhhhhhhcc--ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEecceeecc---
Confidence 00 11234433355555544433 28999999999999999998 999999999999999999987521
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERS 350 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~ 350 (470)
+.+..+..-.|++ +++|.++| +-.-.|++..+++++..++.......-..+|..+..+...|+-+. -..++.
T Consensus 196 ---~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~--lRm~~~ 270 (398)
T d1qgna_ 196 ---LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--LRVQQQ 270 (398)
T ss_dssp ---TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--HHHHHH
T ss_pred ---ccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHH--HHHHHH
Confidence 1133333334665 78899985 222567777888887776543332233467777777765555442 234445
Q ss_pred HHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHH--HcCceec-----
Q 012138 351 AHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMK--ERGILAK----- 410 (470)
Q Consensus 351 ~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~--~~Gv~~~----- 410 (470)
.+++..+.+.|++... .||... ....+.|.++.+++..+. ..+.+|++.|+ ..+....
T Consensus 271 ~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~--~~a~~f~~~L~l~~~a~SlGg~~SL 348 (398)
T d1qgna_ 271 NSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL--LTTAKFVDALKIPYIAPSFGGCESI 348 (398)
T ss_dssp HHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH--HHHHHHHHHCSSSEECSCCCSSSCE
T ss_pred HHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCH--HHHHHHHHcCCcceeeeCCCCCcce
Confidence 5555555555554211 122100 011334778888775432 34566777664 2232211
Q ss_pred ---c-----------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 411 ---P-----------------THDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 411 ---~-----------------~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
| -.++.|||++.+ |+.+++++.|+++|+
T Consensus 349 i~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 349 VDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALD 396 (398)
T ss_dssp EECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred eeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHh
Confidence 1 025789999554 667777888887776
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.69 E-value=1.9e-15 Score=147.01 Aligned_cols=309 Identities=13% Similarity=0.172 Sum_probs=186.1
Q ss_pred HHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCc
Q 012138 97 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 176 (470)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~y 176 (470)
.+++.+.+++..+++. .+...++++.+++++|.+.+++++|||.|+.+|++++- .++|+ .|++...+|
T Consensus 4 ~~~~~~~l~~~~~~~~---G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~--------~~~gd-eVi~p~~t~ 71 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPL---GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG--------VKQDD-IVLASSFTF 71 (374)
T ss_dssp HHHHHHHHHHTTTSCT---THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--------CCTTC-EEEEESSSC
T ss_pred HHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC--------CCCcC-EEEeCCcch
Confidence 4677888877654321 34578999999999999999999999999999998652 12455 677777776
Q ss_pred cccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHh
Q 012138 177 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 256 (470)
Q Consensus 177 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~ 256 (470)
.........+...+.+ ....++... ...+.+........++++|++... .|...+ ++++.++|++
T Consensus 72 ~a~~~~~~~~g~~pv~----~Di~~~~~~----~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d----~~~i~~~~~~ 136 (374)
T d1o69a_ 72 IASVAPICYLKAKPVF----IDCDETYNI----DVDLLKLAIKECEKKPKALILTHL---YGNAAK----MDEIVEICKE 136 (374)
T ss_dssp GGGTHHHHHTTCEEEE----ECBCTTSSB----CHHHHHHHHHHCSSCCCEEEEECG---GGCCCC----HHHHHHHHHH
T ss_pred HhhHHHHhhccceeEe----ccccccccc----ccccccccchhccccccccccccc---ccchhh----hHHHHHHhhc
Confidence 5444333333332222 111000000 122233322333336778886443 456666 9999999999
Q ss_pred cCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEE-ecHHHHhhcCcC------------
Q 012138 257 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVL-ADKEVMLCIQPG------------ 318 (470)
Q Consensus 257 ~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~-~~~~~~~~~~~~------------ 318 (470)
+|++||.|.+|+ |.-..|+. .|-.-|+.+|| |.++.|- . |+++ -++++++.++..
T Consensus 137 ~~i~vIED~a~a~g~~~~~~~-----~G~~gd~~~fSf~~~K~l~tge-G-G~i~tnn~~~~~~~~~~~~~g~~~~~~~~ 209 (374)
T d1o69a_ 137 NDIVLIEDAAEALGSFYKNKA-----LGTFGEFGVYSYNGNKIITTSG-G-GMLIGKNKEKIEKARFYSTQARENCLHYE 209 (374)
T ss_dssp TTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCCSS-C-EEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred cCcchhhhhhhhhcceECCee-----cCCCCceEEEeccCcccccccc-c-eeehhhhHHHHHhhccccccccccccccc
Confidence 999999999998 32222322 22223666554 7776442 2 4444 567776654321
Q ss_pred --CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCC------
Q 012138 319 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA------ 390 (470)
Q Consensus 319 --~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~------ 390 (470)
..|..+..+.+.++.+...|+.+. .+.++.++..+++.+.|.+.....+ ..........+..+.+..+.
T Consensus 210 ~~~~G~N~rm~ei~Aaig~~qL~~l~--~~i~~r~~i~~~y~~~L~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~ 286 (374)
T d1o69a_ 210 HLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEYFSFLD-ELENSRSNRWLSTALINFDKNELNAC 286 (374)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTTEECCC-CCTTEECCCSSEEEEESCCGGGSCCC
T ss_pred cccCCccccccchhhhhhHHHHhhhh--hhcchhHHHHHHHHhhccccccccc-cccCCCCChhheeeeecccccccccc
Confidence 124445689999999988877653 3566667777777777765422111 11111111212222122110
Q ss_pred ------------CchhHHHHHHHHHHcCceeccCC------------------------CCEEEEecCCCCCHHHHHHHH
Q 012138 391 ------------LPVSAYDICLKMKERGILAKPTH------------------------DTIVRLTPPLSISSNELQEGS 434 (470)
Q Consensus 391 ------------~~~~~~~~~~~l~~~Gv~~~~~~------------------------~~~iR~~~~~~~t~e~i~~~~ 434 (470)
.......+.+.|.++||-+++.. ...+.|-....+|++|+++.+
T Consensus 287 ~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~ 366 (374)
T d1o69a_ 287 QKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEIS 366 (374)
T ss_dssp CEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHH
T ss_pred ccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHH
Confidence 02356789999999999875431 233444334567999999999
Q ss_pred HHHHHHHh
Q 012138 435 KALHDVLE 442 (470)
Q Consensus 435 ~~l~~~l~ 442 (470)
+.|.++++
T Consensus 367 ~~I~~~lk 374 (374)
T d1o69a_ 367 KLILKSIK 374 (374)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
Confidence 99999874
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.68 E-value=7.1e-16 Score=147.92 Aligned_cols=289 Identities=11% Similarity=0.099 Sum_probs=178.7
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|+++|+++.+.+.++.++||..|+. ++..+.+ +|+ .||+....|. .+........ +
T Consensus 46 ~~nPt~~~le~~la~LE~~~~a~~fsSGMaAis-all~ll~---------~Gd-~vv~~~~~Yg-~t~~l~~~~~-~--- 109 (380)
T d1ibja_ 46 SGNPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIK---------NGE-EIVAGDDVYG-GSDRLLSQVV-P--- 109 (380)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH-HHHTTSC---------TTC-EEEEESSCCH-HHHHHHHHTS-G---
T ss_pred CCChHHHHHHHHHHHHcCCceEEehhhHHHHHH-HHHHhhC---------CCC-EEEEEecccc-cccchhhhhh-c---
Confidence 457778999999999999999999999999986 4433322 455 6777777753 3333221111 0
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCccc
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 273 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~ 273 (470)
.+...+.++...|++++++++++ ++++|++|.+.||+..+.+ +++|.++|+++|+++|+|+..++..
T Consensus 110 ----~~gi~~~~~d~~~~~~~~~ai~~---~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~atP~-- 176 (380)
T d1ibja_ 110 ----RSGVVVKRVNTTKLDEVAAAIGP---QTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSPV-- 176 (380)
T ss_dssp ----GGTCEEEEECTTSHHHHHHHCCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCTT--
T ss_pred ----cccccccccCcchHHHHHHHhcc---CccEEEecccccccccccc----HHHHHHHHHHcCCeEEeeccccccc--
Confidence 01112345656688999888865 8999999999999999999 9999999999999999999976311
Q ss_pred CCccccccCCCCccee--eccccccC-CCcceeEEEec-HHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q 012138 274 GRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 349 (470)
Q Consensus 274 G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 349 (470)
.+.......|++ +++|.++| |=.-.|+++.+ +++.+.+........-..+|..+..+...++-+. -..++
T Consensus 177 ----~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--lRm~~ 250 (380)
T d1ibja_ 177 ----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEK 250 (380)
T ss_dssp ----TCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH--HHHHH
T ss_pred ----cccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh--hhHHH
Confidence 122222234655 88899985 22145555544 5565655433222233367787777766665443 23444
Q ss_pred HHHHHHHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHH--HcCcee-----
Q 012138 350 SAHLGEELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMK--ERGILA----- 409 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~--~~Gv~~----- 409 (470)
..+++..+.+.|++... .||... ....+.|.++.+.+... ..+..|++.|+ ..++..
T Consensus 251 ~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~---~~a~~f~d~l~l~~~a~SlG~~~S 327 (380)
T d1ibja_ 251 QQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV---ALSKHLVETTKYFSIAVSFGSVKS 327 (380)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH---HHHHHHHHHCSSSEECSCCCSSSC
T ss_pred HHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHH---HHHHHHHHhCCcCeEeeccCCccc
Confidence 55555555555554211 111100 01123455666644322 24566666653 112211
Q ss_pred ---ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 410 ---KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 410 ---~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.|. .++.|||++.+ |+.+.+++.|+++|+ .+
T Consensus 328 Li~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----E~~eDLi~Dl~qAl~-~l 378 (380)
T d1ibja_ 328 LISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK-TF 378 (380)
T ss_dssp EEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH-SC
T ss_pred cccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc----CCHHHHHHHHHHHHH-hc
Confidence 111 15789999554 678888888988888 65
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=8.5e-15 Score=141.01 Aligned_cols=289 Identities=9% Similarity=-0.011 Sum_probs=179.3
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
...++....|+++++++.|.+.++.++||..|+.+++..+.+ +|+ .||+....|. .+...+.-..
T Consensus 54 R~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~---------~Gd-~iv~~~~~Yg-~T~~l~~~~l---- 118 (391)
T d1cl1a_ 54 RRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIE---------QGD-HVLMTNTAYE-PSQDFCSKIL---- 118 (391)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEETTSCH-HHHHHHHHTG----
T ss_pred CCCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccC---------CCC-eEEEeccccc-chhhhhhhcc----
Confidence 345788999999999999999999999999999999887654 466 6777777763 3333221100
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhc--CcEEEEeccccCC
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGL 270 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~--gillI~Dev~~g~ 270 (470)
..+...+..+...|.+++++++++ ++++|++|.+.||+..+.+ ++++.++|+++ |+++++|...+..
T Consensus 119 ----~~~Gi~~~~~d~~d~~~~~~~i~~---~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~atP 187 (391)
T d1cl1a_ 119 ----SKLGVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAG 187 (391)
T ss_dssp ----GGGTCEEEEECTTCGGGGGGTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred ----cccccccccccCcccccccccccc---ccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEeccccch
Confidence 001112345555578888877765 8999999999999999998 99999999775 9999999997631
Q ss_pred cccCCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhhHH
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 347 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~ 347 (470)
-. +.....-.|++ |.+|.++| |=.-.|.++.++++.+.+........-..+|..+..+...|+.+. -..
T Consensus 188 ----~~--~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~--lR~ 259 (391)
T d1cl1a_ 188 ----VL--FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG--VRL 259 (391)
T ss_dssp ----TS--SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred ----hh--hcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHH--HHH
Confidence 11 22222233655 78899985 222456677777766655432222222356777666655554432 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCceEEE------------------eccceeEEEEeccCCCchhHHHHHHHHH--HcCc
Q 012138 348 ERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMK--ERGI 407 (470)
Q Consensus 348 ~~~~~~~~~l~~~L~~l~~~~p~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~--~~Gv 407 (470)
++..+++..+.+.|++ +| .+..+ .+.|.++.+.+..........+|++.|. ..++
T Consensus 260 ~~~~~nA~~vA~~L~~----hp-~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a~ 334 (391)
T d1cl1a_ 260 RQHHESSLKVAEWLAE----HP-QVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAY 334 (391)
T ss_dssp HHHHHHHHHHHHHHHT----CT-TEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCCS
T ss_pred HHHHHHHHHHHHHHHh----cc-cccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEee
Confidence 4444555555555544 22 22222 2446677777765421112334444332 1122
Q ss_pred eec--------c---------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccc
Q 012138 408 LAK--------P---------------THDTIVRLTPPLSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 408 ~~~--------~---------------~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
... | -.++.|||++.+ |+++++++.|+++|+ ++
T Consensus 335 SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~-~i 390 (391)
T d1cl1a_ 335 SWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFA-RI 390 (391)
T ss_dssp CCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHH-HT
T ss_pred CCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHH-hh
Confidence 111 0 015789999554 677888888888877 54
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.64 E-value=3.2e-15 Score=145.12 Aligned_cols=304 Identities=16% Similarity=0.162 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHccccCCCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCC-cEEEEE
Q 012138 94 PKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDE-AIIVSC 172 (470)
Q Consensus 94 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~-~~ii~~ 172 (470)
.+-.+++.+.+++..+. ..+...++++++++++|.+.+++++|||.|+.+|++++.. .+++ ..|++.
T Consensus 12 ~~~~~~v~~~l~~~~~~----~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~--------~~~~~~eVi~p 79 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT----QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSE--------FSADRNEIITT 79 (371)
T ss_dssp HHHHHHHHHHHTSSCCS----SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSC--------CCTTSCEEEEC
T ss_pred HHHHHHHHHHHcCCCcc----CCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcc--------cCCCCCeeecc
Confidence 55667788888654433 2345789999999999999999999999999999986532 1232 367777
Q ss_pred ccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHH
Q 012138 173 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 252 (470)
Q Consensus 173 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~ 252 (470)
.-+|.......+..+..+.+ ....++.. .+.+++++.+.. ++++|++.. ..|...+ ++++.+
T Consensus 80 ~~t~~a~~~ai~~~G~~pv~----vDi~~~~~----~~~~~~~~~~~~---~t~avi~vh---~~G~~~~----~~~i~~ 141 (371)
T d2fnua1 80 PISFVATANMLLESGYTPVF----AGIKNDGN----IDELALEKLINE---RTKAIVSVD---YAGKSVE----VESVQK 141 (371)
T ss_dssp SSSCTHHHHHHHHTTCEEEE----CCBCTTSS----BCGGGSGGGCCT---TEEEEEEEC---GGGCCCC----HHHHHH
T ss_pred cccccccceeeeccCccccc----cccccccc----ccchhhhhhccc---hhhcccccc---ccccccc----cccccc
Confidence 66654333333333332222 22222221 145666666654 899988654 3466666 999999
Q ss_pred HHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc----ccccCCCcceeEEE-ecHHHHhhcCcC--------
Q 012138 253 LCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVL-ADKEVMLCIQPG-------- 318 (470)
Q Consensus 253 l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s----K~l~gG~~~ig~v~-~~~~~~~~~~~~-------- 318 (470)
+|+++|++||.|.+|+ |.-..|+ ..|-.-|+.+|| |.++.| ..|+++ -++++.+.++..
T Consensus 142 ~~~~~~i~lIEDaaqa~Ga~~~~~-----~~G~~g~~~~~Sf~~~K~l~~g--~GG~i~t~~~~~~~~~~~~~~~g~~~~ 214 (371)
T d2fnua1 142 LCKKHSLSFLSDSSHALGSEYQNK-----KVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKK 214 (371)
T ss_dssp HHHHHTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred cccccchhhccchhhccCceeccc-----cCCccccccccccccccccccc--cceEEEeechhhhhhcccccccccccc
Confidence 9999999999999998 2211221 122223554444 777754 234455 455666655321
Q ss_pred --------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEE------eccceeEEE
Q 012138 319 --------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------RGRGLFNAV 384 (470)
Q Consensus 319 --------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~------~~~g~~~~~ 384 (470)
..+..+..+.+.++.+...|+.+. ++.++.+++..++.+.|.... .+... ......+.+
T Consensus 215 ~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~--~~~~~R~~~~~~y~~~l~~~~-----~~~~~~~~~~~~~~~~~~~i 287 (371)
T d2fnua1 215 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDNP-----YFTPLHPLLKDKSSNHLYPI 287 (371)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTCS-----SEEESGGGCSSCCCCSCEEE
T ss_pred cccccccccccccccccchhhhhhhhhhhhcc--chhhhhhhhhhhhcccccccc-----cccccccccccccccccccc
Confidence 124455688999988888776553 455666667777766665431 22211 112223333
Q ss_pred EeccCCCchhHHHHHHHHHHcCceeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 012138 385 EFDKTALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHD 439 (470)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------------------~~~iR~~~~~~~t~e~i~~~~~~l~~ 439 (470)
.+.... .....++.+.|.++||-+.+.. .+.+.|-....+|++|+++.++.|.+
T Consensus 288 ~~~~~~-~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~ 366 (371)
T d2fnua1 288 LMHQKF-FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 366 (371)
T ss_dssp EECGGG-GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccc-hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHH
Confidence 343221 1246789999999999875321 24566544456799999999999999
Q ss_pred HHh
Q 012138 440 VLE 442 (470)
Q Consensus 440 ~l~ 442 (470)
+++
T Consensus 367 ~~~ 369 (371)
T d2fnua1 367 TFE 369 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.62 E-value=2.4e-14 Score=137.92 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=144.1
Q ss_pred CCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCccc
Q 012138 113 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (470)
Q Consensus 113 ~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 192 (470)
...++....|++.|+++.|.+..+.++||..|+.+++..+.+ +|+ .|++.+..|.| +.....-..
T Consensus 55 R~~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l~~---------~gd-~vv~~~~~yg~-t~~~~~~~~---- 119 (394)
T d1e5ea_ 55 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILK---------AGD-HLISDECLYGC-THALFEHAL---- 119 (394)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESCCCHH-HHHHHHTHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhhcc---------ccc-ccccccceeeh-hhHhHHHHh----
Confidence 345788899999999999999999999999999988876654 455 77776666543 322211100
Q ss_pred ccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHH-hcCcEEEEeccccCCc
Q 012138 193 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQSGLA 271 (470)
Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~-~~gillI~Dev~~g~g 271 (470)
..+...+.++...|++++++++++ ++++|++|.+.||+..+.+ ++++.++++ ++|+++|+|...+..
T Consensus 120 ----~~~gi~~~~~d~~d~~~~~~~i~~---~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~atP- 187 (394)
T d1e5ea_ 120 ----TKFGIQVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSP- 187 (394)
T ss_dssp ----HHTTCEEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCT-
T ss_pred ----hccceeeeccCCCCHHHHHHhhcc---cccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCcccCc-
Confidence 001112456666688999999876 8999999999999999998 998888666 478999999987621
Q ss_pred ccCCccccccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCcC--CccCCCCCCHHHHHHHHHHHHHHhhhhH
Q 012138 272 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKL 346 (470)
Q Consensus 272 ~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 346 (470)
.. +.......|++ |.+|.++| +-.-.|+++++++.....+.. .....-..+|..+..+...|+.+. -.
T Consensus 188 ---~~--~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL~--lR 260 (394)
T d1e5ea_ 188 ---MI--TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLN--IR 260 (394)
T ss_dssp ---TT--CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHH--HH
T ss_pred ---cc--CCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhHH--HH
Confidence 11 22222333665 88899985 332567788887766544321 111222367777777766665443 23
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012138 347 AERSAHLGEELRQHLFK 363 (470)
Q Consensus 347 ~~~~~~~~~~l~~~L~~ 363 (470)
.++..+++..+.+.|++
T Consensus 261 m~r~~~nA~~lA~~L~~ 277 (394)
T d1e5ea_ 261 MKAESENAMKVAEYLKS 277 (394)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455555555555554
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.62 E-value=1.3e-13 Score=137.24 Aligned_cols=308 Identities=12% Similarity=0.042 Sum_probs=184.3
Q ss_pred cHHHHHHHHhhhhCCC-----------eEEecCChhHHHHHHHHHHHHhchhcc-----cCCC---CCcEEEEEccCccc
Q 012138 118 KFPVFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVKK-----KFSI---DEAIIVSCCGCFHG 178 (470)
Q Consensus 118 ~~~~l~~~l~~~~~~~-----------~v~~~~sGteA~~~al~~~~~~~~~~~-----~~~~---g~~~ii~~~~~yhg 178 (470)
...++.+||++++|++ .-++|+||++||..++.++|.....+. +... ....++.....-|-
T Consensus 114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~ 193 (476)
T d1js3a_ 114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS 193 (476)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence 3456777888888764 257999999999999999986432110 0000 01244445444477
Q ss_pred cccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhc---CCCeEEEEEccccCCCccccCChhhHHHHHHHHH
Q 012138 179 RTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 255 (470)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~---~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~ 255 (470)
+...+..+-+...... +... ...+ |+++|+++|++. +..+.+|+.....+.+|.+-| +++|.++|+
T Consensus 194 Si~ka~~~lGl~~~~v---~~d~-~~~m---d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~ 262 (476)
T d1js3a_ 194 SVERAGLIGGVKLKAI---PSDG-KFAM---RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICH 262 (476)
T ss_dssp HHHHHHHHHTCEEEEE---CCCT-TSCC---CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred HHHHHHHhcCceEEEe---ccCC-CCCc---CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHH
Confidence 6666555444322111 1111 1223 899999999763 234556666666888999999 999999999
Q ss_pred hcCcEEEEeccccCCcccCCccccccCCC-Ccceeecc--ccccCCCcceeEEEecHH--HHhhcCcC-------C----
Q 012138 256 KYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQPG-------E---- 319 (470)
Q Consensus 256 ~~gillI~Dev~~g~g~~G~~~~~~~~~~-~pdi~s~s--K~l~gG~~~ig~v~~~~~--~~~~~~~~-------~---- 319 (470)
+||+++++|.+++|+...-........++ ..|.+++. |.+...+ ..|+++.++. +...+... .
T Consensus 263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~-~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~ 341 (476)
T d1js3a_ 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSG 341 (476)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC------------CC
T ss_pred hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCC-cceeecccchHHHHHHHhcChhhhcccccccc
Confidence 99999999999997543221111111233 24666554 8888776 8888887642 22222100 0
Q ss_pred -----ccCCC-CCCHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHhhCCCceEEE-eccceeEEEEeccC
Q 012138 320 -----HGSTF-GGNPLASAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKT 389 (470)
Q Consensus 320 -----~~~t~-~~~~~~~aaa~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~-~~~g~~~~~~~~~~ 389 (470)
...+. .+-.......+.+++.+..+. +.++..++++++.+.|++. | .+..+ ++.-.++.|.+...
T Consensus 342 ~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~----~-~fel~~~p~l~iV~Fr~~~~ 416 (476)
T d1js3a_ 342 LITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----P-RFEVCAEVTLGLVCFRLKGS 416 (476)
T ss_dssp SCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----T-TEEECSCCCSSEEEEEESSC
T ss_pred ccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEECCCceEEEEEEccCC
Confidence 00011 111222333455566555544 4445555666666666553 2 33332 33344555655432
Q ss_pred CCchhHHHHHHHHHHcC-ceeccC---CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccc
Q 012138 390 ALPVSAYDICLKMKERG-ILAKPT---HDTIVRLTPP-LSISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 390 ~~~~~~~~~~~~l~~~G-v~~~~~---~~~~iR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
. ....++.++|.+.| +++.+. +..++|+++. ..+++++|+.+++.|++..+ ++
T Consensus 417 d--~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~-~l 474 (476)
T d1js3a_ 417 D--GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA-EL 474 (476)
T ss_dssp H--HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred h--HHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 2 23467888888887 444432 3458999865 56789999999999999887 64
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.60 E-value=1.6e-14 Score=136.35 Aligned_cols=281 Identities=14% Similarity=0.133 Sum_probs=177.0
Q ss_pred HHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCC
Q 012138 121 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL 200 (470)
Q Consensus 121 ~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 200 (470)
.|+++++++.|.+.++.++||..|+..++..+.+ +|+ .||+....|.|........ ...+ .
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~---------~Gd-~iv~~~~~Yg~t~~~~~~~------l~~~---g 62 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLK---------AGD-HLISDDCLYGCTHALFEHQ------LRKF---G 62 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEEESCCCHHHHHHHHTH------HHHT---T
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhC---------CCC-EEEEeCCCchHHHHHHHHH------HHhc---C
Confidence 5889999999999999999999999998876655 566 7777777775532221110 0011 1
Q ss_pred CCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHH-HhcCcEEEEeccccCCcccCCcccc
Q 012138 201 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC-SKYNILMIADEIQSGLARSGRMLAS 279 (470)
Q Consensus 201 ~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~-~~~gillI~Dev~~g~g~~G~~~~~ 279 (470)
-++.+++..|++.+++++++ ++++|++|.+.||+..+.+ ++.+.+++ +++|+++|+|...+.. +.+
T Consensus 63 i~~~~~d~~d~~~~~~~i~~---~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp------~~~ 129 (331)
T d1pffa_ 63 VEVDFIDMAVPGNIEKHLKP---NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP------ILT 129 (331)
T ss_dssp CEEEEECTTSTTHHHHTCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH------HHC
T ss_pred eEEEEecccchhhHhhhccc---ccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc------ccc
Confidence 22456666688888888876 8999999999999999998 99888885 6789999999987621 112
Q ss_pred ccCCCCccee--eccccccC-CCcceeEEEecHHHHhhcCc--CCccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 012138 280 DWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQP--GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLG 354 (470)
Q Consensus 280 ~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~~~~~~~~~--~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~ 354 (470)
.......|++ +.+|.++| |-.-.|+++.+++....... ......-..+|..+......++.+.. ..++..+++
T Consensus 130 ~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~--Rm~~~~~nA 207 (331)
T d1pffa_ 130 NPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENA 207 (331)
T ss_dssp CGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 2222234665 78899986 33256677787665544322 11222233678888887777766533 344455555
Q ss_pred HHHHHHHHHHHh----hCCCce---------EEEeccceeEEEEeccCCCchhHHHHHHHHH--HcCceec--------c
Q 012138 355 EELRQHLFKIQQ----QFPNYV---------KEVRGRGLFNAVEFDKTALPVSAYDICLKMK--ERGILAK--------P 411 (470)
Q Consensus 355 ~~l~~~L~~l~~----~~p~~~---------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~--~~Gv~~~--------~ 411 (470)
..+.+.|++... .||... ....+.|.++.+.+... ..+.+|++.|. ..+.... |
T Consensus 208 ~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~---~~~~~f~d~l~lf~~~~SlG~~~SLi~~p 284 (331)
T d1pffa_ 208 QKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGL---EKAKKVLDNCHVVSLAVSLGGPESLIQHP 284 (331)
T ss_dssp HHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH---HHHHHHHHTCSSSEECSSCCSSSCEEECH
T ss_pred HHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccH---HHHHHHHHhCCcceecccCCCCceeEeCc
Confidence 555555555321 111100 01234577888877532 25555665553 1122111 0
Q ss_pred -----------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 412 -----------------THDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 412 -----------------~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
-.++.||++..+ |+.+++++.|+++|+
T Consensus 285 ~~~~h~~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~ 328 (331)
T d1pffa_ 285 ASMTHAGVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALD 328 (331)
T ss_dssp HHHTSTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHH
Confidence 015789999655 667777777777776
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=3.9e-14 Score=137.02 Aligned_cols=167 Identities=19% Similarity=0.146 Sum_probs=114.3
Q ss_pred CCCCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcc
Q 012138 112 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE 191 (470)
Q Consensus 112 ~~~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~ 191 (470)
....++....|+++|+++.+.+.++.++||..|+.+++..+.+ +|+ .||+....|+|........-. .
T Consensus 53 sR~~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l~~---------~gd-~il~~~~~Yg~t~~l~~~~~~--~ 120 (421)
T d2ctza1 53 SRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQ---------AGD-NIVSTPNLYGGTFNQFKVTLK--R 120 (421)
T ss_dssp BTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCC---------TTC-EEEECSCCCHHHHHHHHTHHH--H
T ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhhcc---------ccc-ceeecCCcCCchhHHHHHHHh--h
Confidence 3356788999999999999999999999999999988877654 455 888888888654322211100 0
Q ss_pred cccCCCCCCCCeeeecCCC-HHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCC
Q 012138 192 AIRGFGPLLPGHLKVDFGD-ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d-~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~ 270 (470)
+ .-.+.++...+ .+..++.++. +|++|++|.+.||+..+.+ +++|.++|+++|+++|+|...+
T Consensus 121 ----~---gi~~~~~d~~~~~~~~~~~~~~---~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a-- 184 (421)
T d2ctza1 121 ----L---GIEVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG-- 184 (421)
T ss_dssp ----T---TCEEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG--
T ss_pred ----c---cccceecccccCcchhccccCC---CceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEeccccc--
Confidence 0 01123332223 3445555554 8999999999999999999 9999999999999999999875
Q ss_pred cccCCccccccCCCCccee--eccccccC-CCcceeEEEecH
Q 012138 271 ARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK 309 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~~~~ 309 (470)
+.+.. +.......|++ +.+|.++| |=.-.|+++.++
T Consensus 185 --~tP~~-~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 185 --MGGYL-LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp --GGGTS-CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred --cccee-ccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 11111 22222334665 78899985 332455566543
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.53 E-value=4e-14 Score=136.64 Aligned_cols=318 Identities=9% Similarity=0.021 Sum_probs=164.2
Q ss_pred EeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC---C------CCCcHHHHHHHHhhhhCCC---eEEecCChhHHH
Q 012138 78 LDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA---F------YNDKFPVFAERLTSMFGYD---MVLPMNTGAEGV 145 (470)
Q Consensus 78 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~---~------~~~~~~~l~~~l~~~~~~~---~v~~~~sGteA~ 145 (470)
.+|..|... .+++|+++|.+.+-.+...+.. + ..+..++..+.|+++++.+ .++|++|+++++
T Consensus 5 ~~F~pGP~~-----vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~ 79 (361)
T d2c0ra1 5 YNFNAGPAA-----LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ 79 (361)
T ss_dssp EECCSSSCC-----CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred cccCCCCcC-----CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHH
Confidence 366655333 4689999998877443211111 1 1234567788888888753 477777666555
Q ss_pred H-HHHHHHHHhchhcccCCCCCcEEEEEccCccccccch-hcccCCcccccCCCCCCCCeeeecC---CCHHHHHHHHHh
Q 012138 146 E-TALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKE 220 (470)
Q Consensus 146 ~-~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~Le~~l~~ 220 (470)
. +++..+.. +++ +++.......+..... ....+.... ....+. .+++++++.+..
T Consensus 80 ~ea~~~~l~~---------~~~-~~l~~~~g~~~~~~~~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~ 139 (361)
T d2c0ra1 80 FAMIPMNFLK---------EGQ-TANYVMTGSWASKALKEAKLIGDTHV----------AASSEASNYMTLPKLQEIQLQ 139 (361)
T ss_dssp HHHHHHHHCC---------TTC-EEEEEECSHHHHHHHHHHHHHSCEEE----------EEECGGGTTCSCCCGGGCCCC
T ss_pred HHHHHhcccc---------CCC-ceEEEeechhhhhhhhhhhhcCceee----------eeccccccccchhhhhhhccc
Confidence 4 44433321 344 5554443332222211 111111100 001110 144445544433
Q ss_pred cCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCc
Q 012138 221 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 300 (470)
Q Consensus 221 ~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~ 300 (470)
.. .+. +.|.+|.+.| ++++.++|++||+++++|.+++ +| +..+..+ .+..|+.+.+|.++++-
T Consensus 140 ---~~-~~~---v~~~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g--~~~id~~--~~di~~~s~~k~~~~~~- 202 (361)
T d2c0ra1 140 ---DN-AAY---LHLTSNETIE----GAQFKAFPDTGSVPLIGDMSSD-IL--SRPFDLN--QFGLVYAGAQKNLGPSG- 202 (361)
T ss_dssp ---TT-EEE---EEEESEETTT----TEECSSCCCCTTSCEEEECTTT-TT--SSCCCGG--GCSEEEEETTTTTCCSS-
T ss_pred ---Cc-ceE---EEEeccccee----cceEEEeeccCCceEEEEeecc-cc--ccccccc--cceeEEEeccccccccc-
Confidence 22 222 2456788887 6778899999999999999998 21 2222233 34457888889887432
Q ss_pred ceeEEEecHHHHhhcCcC-----------CccCCCCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHH
Q 012138 301 PVSAVLADKEVMLCIQPG-----------EHGSTFGGNPLASAVAIASLDVIRDEK----LAERSAHLGEELRQHLFKIQ 365 (470)
Q Consensus 301 ~ig~v~~~~~~~~~~~~~-----------~~~~t~~~~~~~~aaa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~ 365 (470)
..++++..+.+...-... ........++.....+..++....... ...+.+.....+........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (361)
T d2c0ra1 203 VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG 282 (361)
T ss_dssp CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CcEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcc
Confidence 333333333322221111 111122234444444433333332222 22222222322222222211
Q ss_pred hhCCCceE--EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 366 QQFPNYVK--EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 366 ~~~p~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
...+ ... ..++. ....+.++. +.++.++.+.|.++||.+..+.+ +.+|++....+|.|||+++++.|++..
T Consensus 283 ~~~~-~~~~~~~rS~-~~~~~~~~~---~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~ 357 (361)
T d2c0ra1 283 GFYR-GCVDVDSRSD-MNITFRLAS---EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFK 357 (361)
T ss_dssp TSSE-ESSCGGGBCS-SEEEEECSC---HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cccc-cCCChhhccc-eEEEEECCC---cccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 1100 011 11222 223343432 24678999999999999887642 349999988999999999999999976
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
+
T Consensus 358 ~ 358 (361)
T d2c0ra1 358 R 358 (361)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=1.6e-13 Score=131.91 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=172.3
Q ss_pred CCCCcHHHHHHHHhhhhCCCeEEecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccc
Q 012138 114 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 193 (470)
Q Consensus 114 ~~~~~~~~l~~~l~~~~~~~~v~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 193 (470)
..++....|+++|+++.+.+.++.++||..|+.+++.++ . +|+ .||+....|.+........-.
T Consensus 52 ~gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l~~l-~---------~gd-~iv~~~~~yg~t~~~~~~~l~----- 115 (393)
T d1n8pa_ 52 SQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSL-P---------QGS-HAVSIGDVYGGTHRYFTKVAN----- 115 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHTS-C---------SSC-EEEEESSCCHHHHHHHHHTST-----
T ss_pred CCChHHHHHHHHHHHHhCCceEEEecCchhHHHhhhhcc-c---------CCC-eeeeeeeecccchhhhhhhhh-----
Confidence 457788999999999999999999999998886554332 2 455 677777777553322211111
Q ss_pred cCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHH----hcCcEEEEeccccC
Q 012138 194 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS----KYNILMIADEIQSG 269 (470)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~----~~gillI~Dev~~g 269 (470)
.+.-.+..+. .+.++++++++. ++++|++|.+.||+..+.+ +++|.++|+ ++|+++|+|...+.
T Consensus 116 ----~~gi~~~~~~-~~~~~~~~~i~~---~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVDnT~at 183 (393)
T d1n8pa_ 116 ----AHGVETSFTN-DLLNDLPQLIKE---NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ----TTCSCCEEES-SHHHHHHHHSCS---SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ----cccceeEEee-cchHHHHHHhhh---hcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEecCccC
Confidence 1111123332 256788888775 8999999999999999998 999999998 78899999998752
Q ss_pred CcccCCccccccCCCCccee--eccccccC-CCcceeEEE-ecHHHHhhcCcCCccCCCCCCHHHHHHHHHHHHHHhhhh
Q 012138 270 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK 345 (470)
Q Consensus 270 ~g~~G~~~~~~~~~~~pdi~--s~sK~l~g-G~~~ig~v~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~ 345 (470)
. ..+.......|++ +.+|.++| |=.-.|+++ .++++.+.++.......-..+|..+..+...|+-+..
T Consensus 184 P------~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl~l-- 255 (393)
T d1n8pa_ 184 P------YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHL-- 255 (393)
T ss_dssp H------HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH--
T ss_pred c------ccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcchhh--
Confidence 1 1122222233665 78899985 221455655 4556666665432222334677777777666654432
Q ss_pred HHHHHHHHHHHHHHHHHHH-H----hhCCCce---------EEEe--ccceeEEEEeccCCCchhHHHHHHHHH--HcCc
Q 012138 346 LAERSAHLGEELRQHLFKI-Q----QQFPNYV---------KEVR--GRGLFNAVEFDKTALPVSAYDICLKMK--ERGI 407 (470)
Q Consensus 346 ~~~~~~~~~~~l~~~L~~l-~----~~~p~~~---------~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~--~~Gv 407 (470)
..++..+++..+.+.|+.. . -.||... .... +.|.++.+++.... ..+.+|++.|+ ..+.
T Consensus 256 R~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~--~~~~~f~~~l~l~~~~~ 333 (393)
T d1n8pa_ 256 RVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA--EAASKFASSTRLFTLAE 333 (393)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH--HHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCH--HHHHHHHHhCCcceecc
Confidence 3334444444444444321 0 0112100 0001 23778888886432 23556666653 2122
Q ss_pred ee--------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 408 LA--------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 408 ~~--------~~~-----------------~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
.. .|. .++.|||++.+ |+++++++.|+++|+
T Consensus 334 SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGl----E~~~DLi~Dl~~AL~ 389 (393)
T d1n8pa_ 334 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGI----EDTDDLLEDIKQALK 389 (393)
T ss_dssp CCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred cCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHH
Confidence 11 111 14789999665 566667777766665
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.52 E-value=1.2e-12 Score=123.88 Aligned_cols=319 Identities=14% Similarity=0.150 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHH-cccc--CCCCC--CCcHH---HHH-HHHhhhhCCCeE-EecCChhHHHHHHHHHHHHhchhccc
Q 012138 92 CHPKIMKALQEQAEK-LTLS--SRAFY--NDKFP---VFA-ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 92 ~~p~v~~a~~~~~~~-~~~~--~~~~~--~~~~~---~l~-~~l~~~~~~~~v-~~~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
..|.|++++...+.+ +..+ ...|+ .+... .++ ++..++++.+.+ +=..||+.||.+++.++.+
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~------- 107 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLE------- 107 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcC-------
Confidence 347777777665532 2211 11121 12223 333 444567788775 3457899999998887765
Q ss_pred CCCCCcEEEEEccCccccccchhcccCC-cccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI 240 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~ 240 (470)
||| .|+..+...-|+.......... ..+....-++.++...+ |++++++.+++. ++++|++-.-. .-..
T Consensus 108 --pGD-~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~I---D~d~l~~~a~~~--kPklIi~G~S~--y~r~ 177 (405)
T d1kl1a_ 108 --HGD-TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVI---DYDDVREKARLH--RPKLIVAAASA--YPRI 177 (405)
T ss_dssp --TTC-EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSB---CHHHHHHHHHHH--CCSEEEECCSS--CCSC
T ss_pred --CCC-EEEEeecccccccccCccccccceEEEEEEeccchhcccc---cHHHHHHHHHhh--CcceEEecccc--cccc
Confidence 666 7878776632222111111000 00110001222233334 899999999887 77888875511 2234
Q ss_pred cCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHHHHhhcCc
Q 012138 241 IPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQP 317 (470)
Q Consensus 241 ~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~~~~~~~~ 317 (470)
.| +++++++|++.|++|+.|-+|. |+.-.|.+ .+.+.. .|+++.+ |+|.|. +-|.|+.++++.+.+..
T Consensus 178 ~d----~~~~reIad~vga~l~~D~aH~~GLIa~g~~--~~P~~~-aDvvt~tThKtlrGP--rgg~I~~~~~~~~~i~~ 248 (405)
T d1kl1a_ 178 ID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH--PNPVPY-AHFVTTTTHKTLRGP--RGGMILCQEQFAKQIDK 248 (405)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCSTTT-CSEEEEESSSTTCCC--SCEEEEECHHHHHHHHH
T ss_pred cC----hHHHHHHHhhhCCEEecchhhHhhhhhhhhc--CChhhh-hhheeccccccccCC--CCceEEecchhHHHHHh
Confidence 44 9999999999999999999998 66444432 122222 4888655 888875 78889999988887764
Q ss_pred CCccCCCCCCHH-HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEeccCCC
Q 012138 318 GEHGSTFGGNPL-ASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTAL 391 (470)
Q Consensus 318 ~~~~~t~~~~~~-~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~~~~~~ 391 (470)
....+..+++.+ .+|+...++..... +.+.+++..+++.|.+.|.+.+ +..+.+ ...++++.+....
T Consensus 249 avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G------~~vv~ggTd~H~vlvdl~~~~- 321 (405)
T d1kl1a_ 249 AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG------FTLVSGGTDNHLLLVDLRPQQ- 321 (405)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECGGGT-
T ss_pred hhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC------ceeecCCCccceeeccccccC-
Confidence 433333343333 33333334444322 4577788888888888887743 333333 4456666664322
Q ss_pred chhHHHHHHHHHHcCceec----cCC------CCEEEEecCC----CCCHHHHHHHHHHHHHHHhccc
Q 012138 392 PVSAYDICLKMKERGILAK----PTH------DTIVRLTPPL----SISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 392 ~~~~~~~~~~l~~~Gv~~~----~~~------~~~iR~~~~~----~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
.......+.|.+.||.+. |+. ++.|||..|. .+.++|+.++.+.|.++++ ..
T Consensus 322 -~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~-~~ 387 (405)
T d1kl1a_ 322 -LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK-NV 387 (405)
T ss_dssp -CCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT-CT
T ss_pred -CcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh-cC
Confidence 356666667777799875 332 4679997653 4788999999999999997 54
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.4e-12 Score=124.08 Aligned_cols=284 Identities=16% Similarity=0.172 Sum_probs=179.6
Q ss_pred HHHhhhhCCCeEE-ecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcc-cCC-cccc-cCCCCC
Q 012138 124 ERLTSMFGYDMVL-PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCD-NEAI-RGFGPL 199 (470)
Q Consensus 124 ~~l~~~~~~~~v~-~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~-~~~-~~~~-~~~~~~ 199 (470)
++..++++.+.+- -..||+.||.+++.++.+ ||+ .|+..+.. ||.....-.. ... ..+. ..| +.
T Consensus 79 ~ra~~lF~a~~anVqp~SGs~AN~av~~All~---------pGD-~Il~l~l~-~GGHlshg~~~~~~g~~~~~~~y-~~ 146 (416)
T d1dfoa_ 79 DRAKELFGADYANVQPHSGSQANFAVYTALLE---------PGD-TVLGMNLA-HGGHLTHGSPVNFSGKLYNIVPY-GI 146 (416)
T ss_dssp HHHHHHHTCSEEECCCSSHHHHHHHHHHHHCC---------TTC-EEEEECTT-TTCCGGGTCTTSHHHHHSEEEEE-CB
T ss_pred HHHHHHhCCCcceeecccCccHHHHHHHHhcC---------CCC-eeeecccc-ccccccccccccccCceEEEEec-cc
Confidence 3344567887753 368999999999987765 566 88887777 4443322111 100 0000 000 00
Q ss_pred CCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CCcccCCccc
Q 012138 200 LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLA 278 (470)
Q Consensus 200 ~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~g~~G~~~~ 278 (470)
.. ...+ |++++++..++. ++++|++-. +......| +++++++|++.|++|++|.+|. |+.-.|..
T Consensus 147 d~-~~~I---Dyd~l~~~a~~~--kPklIi~G~--S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~~-- 212 (416)
T d1dfoa_ 147 DA-TGHI---DYADLEKQAKEH--KPKMIIGGF--SAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGVY-- 212 (416)
T ss_dssp CS-SSSB---CHHHHHHHHHHH--CCSEEEEEC--SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--
T ss_pred CC-ccCc---cHHHHHHHHHHh--ccceEEecc--cccccccC----HHHHHHHHHhcCceEEcchhhhhcceecccc--
Confidence 01 1123 899999999886 778888754 33455666 9999999999999999999998 66433332
Q ss_pred cccCCCCcceee--ccccccCCCcceeEEEec---HHHHhhcCcCCccCCCCCC-HHHHHHHHHHHHHHhh---hhHHHH
Q 012138 279 SDWEEVRPDMVI--LGKALGGGVIPVSAVLAD---KEVMLCIQPGEHGSTFGGN-PLASAVAIASLDVIRD---EKLAER 349 (470)
Q Consensus 279 ~~~~~~~pdi~s--~sK~l~gG~~~ig~v~~~---~~~~~~~~~~~~~~t~~~~-~~~~aaa~a~l~~~~~---~~~~~~ 349 (470)
.+.+.. .|+++ +.|+|.|. +-|.++.+ +++.+.+......+..+++ .-..++...++..... ..+.++
T Consensus 213 ~sP~~~-aDvvt~tThKtlrGP--rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~q 289 (416)
T d1dfoa_ 213 PNPVPH-AHVVTTTTHKTLAGP--RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQ 289 (416)
T ss_dssp CCCTTT-SSEEEEESSSTTCCC--SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCcccc-cceeeeehhhcccCC--CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 222332 38774 45888875 67778875 5666665433333333332 2333333445555332 467788
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEeccCCCchhHHHHHHHHHHcCceec----cC------CCCEE
Q 012138 350 SAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKERGILAK----PT------HDTIV 417 (470)
Q Consensus 350 ~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~------~~~~i 417 (470)
+.++++.|.+.|.+.+ +..+.+ ...++++.+... +.+..++.+.|.+.||.+. |+ .+..|
T Consensus 290 vv~NA~~La~~L~~~G------~~iv~ggTdnHlvlvdl~~~--~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGi 361 (416)
T d1dfoa_ 290 VAKNAKAMVEVFLERG------YKVVSGGTDNHLFLVDLVDK--NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGI 361 (416)
T ss_dssp HHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECGGG--TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEE
T ss_pred HHHHHHHHHHHHHhCC------cccccCCCCCceeEEEeccc--CCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCce
Confidence 8888888888887743 333322 345666766432 2366777788888899874 33 24679
Q ss_pred EEecCC----CCCHHHHHHHHHHHHHHHhccc
Q 012138 418 RLTPPL----SISSNELQEGSKALHDVLELDL 445 (470)
Q Consensus 418 R~~~~~----~~t~e~i~~~~~~l~~~l~~~~ 445 (470)
||..|. .+.++|++++.+.|.++++ ..
T Consensus 362 RiGT~a~TtrG~~e~d~~~iA~~I~~~l~-~~ 392 (416)
T d1dfoa_ 362 RVGTPAITRRGFKEAEAKELAGWMCDVLD-SI 392 (416)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred EeCCHHHHhCCCCHHHHHHHHHHHHHHHH-cC
Confidence 997653 4678999999999999997 53
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.50 E-value=4.7e-14 Score=135.99 Aligned_cols=322 Identities=12% Similarity=0.024 Sum_probs=167.7
Q ss_pred eEEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC----C-----CCCcHHHHHHHHhhhhCCC---eEEecCChhH
Q 012138 76 KYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA----F-----YNDKFPVFAERLTSMFGYD---MVLPMNTGAE 143 (470)
Q Consensus 76 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~-----~~~~~~~l~~~l~~~~~~~---~v~~~~sGte 143 (470)
++.+|..|... .|++|++++.+++-.+...... . .....++..+.|+++++.+ .+++++|+++
T Consensus 3 ~~~nF~pGP~~-----~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~ 77 (360)
T d1w23a_ 3 QVFNFNAGPSA-----LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS 77 (360)
T ss_dssp CCEECCSSSCC-----CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred ceeEeCCCCcC-----CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence 34567766433 4699999999877443211110 0 1224567788888888643 4778888777
Q ss_pred HHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchh-cccCCcccccCCCCCCCCeeeec---CCCHHHHHHHHH
Q 012138 144 GVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVD---FGDITALEKIFK 219 (470)
Q Consensus 144 A~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~Le~~l~ 219 (470)
++..+...... ++++.+++.....++...... ...+.... ....+ ...+++++....
T Consensus 78 ~~~~~~~~~~~---------~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 138 (360)
T d1w23a_ 78 LQFTMLPMNLL---------TKGTIGNYVLTGSWSEKALKEAKLLGETHI----------AASTKANSYQSIPDFSEFQL 138 (360)
T ss_dssp HHHHHHHHHHC---------CTTCEEEEEECSHHHHHHHHHHHTTSEEEE----------EEECGGGTSCSCCCGGGCCC
T ss_pred HHHHHHHhhhc---------ccCcccceeeccchhhhhHHHHHHhhhcce----------eeccccccccchhhhhhccc
Confidence 76655554433 234455554444333322211 11110000 00000 012222322221
Q ss_pred hcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCC
Q 012138 220 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 299 (470)
Q Consensus 220 ~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~ 299 (470)
....+.+ .|.+|.+.| ++++.++|++||+++|+|.+|+ + .+....++.++ .|+.+++|.++++-
T Consensus 139 ----~~~~~~~---~~~tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~--g~~~id~~~~~--vd~~~~~~~k~~~~ 202 (360)
T d1w23a_ 139 ----NENDAYL---HITSNNTIY----GTQYQNFPEINHAPLIADMSSD-I--LSRPLKVNQFG--MIYAGAQKNLGPSG 202 (360)
T ss_dssp ----CTTEEEE---EEESEETTT----TEECSSCCCCCSSCEEEECTTT-T--TSSCCCGGGCS--EEEEETTTTTSCTT
T ss_pred ----cccccee---EecCCcccc----ceeeeeccccceeeEEeecccc-c--ccccccccccc--ceEEeeccccccCC
Confidence 1122223 455788887 8888999999999999999998 2 22233344444 48889998877543
Q ss_pred cceeEEEecHHHHhhcCcC-----------CccCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 300 IPVSAVLADKEVMLCIQPG-----------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 300 ~~ig~v~~~~~~~~~~~~~-----------~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
..+.++.++...+..... ..............+....+..+.+........+........+.......
T Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (360)
T d1w23a_ 203 -VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES 281 (360)
T ss_dssp -CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 445555554443322211 01112223333333333333333332221222222222222222211111
Q ss_pred CCceE-----EEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 369 PNYVK-----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 369 p~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
..... ..++.+ ...+.+.. +....++.+.|.++||.+..++. +.+|++....+|.||++.+++.|++..
T Consensus 282 ~~~~~~~~~~~~rS~~-vvsf~i~~---~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~ 357 (360)
T d1w23a_ 282 NGFYVGHAEKGSRSLM-NVTFNLRN---EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFK 357 (360)
T ss_dssp TTSSEESSCGGGBCSS-EEEEECSS---HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCChhhccee-EEEEEcCC---CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence 10111 112222 34454432 23677899999999999876632 349999777779999999999999987
Q ss_pred h
Q 012138 442 E 442 (470)
Q Consensus 442 ~ 442 (470)
+
T Consensus 358 ~ 358 (360)
T d1w23a_ 358 E 358 (360)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.3e-13 Score=132.53 Aligned_cols=327 Identities=10% Similarity=-0.008 Sum_probs=169.5
Q ss_pred EEeccCCcccccCCCCCHHHHHHHHHHHHHccccCCC---CC------CCcHHHHHHHHhhhhCCC---eEEecCChhHH
Q 012138 77 YLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRA---FY------NDKFPVFAERLTSMFGYD---MVLPMNTGAEG 144 (470)
Q Consensus 77 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~---~~------~~~~~~l~~~l~~~~~~~---~v~~~~sGteA 144 (470)
+.+|..|... .+++|++++.+.+..+...+.+ .. .+..++..+.|+++++.+ .|+|++|++++
T Consensus 2 ~~nF~pGP~~-----~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~ 76 (360)
T d1bjna_ 2 IFNFSSGPAM-----LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRG 76 (360)
T ss_dssp CEECCSSSCC-----CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred eEEeCCCCcC-----CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHH
Confidence 3467665433 4699999999987654321111 11 133567788888888653 57887777666
Q ss_pred HHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCC
Q 012138 145 VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQ 224 (470)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~ 224 (470)
+..+...... ++++.+++....+.+............... +.. ...-...+.+.+++.+.. +
T Consensus 77 ~~~a~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~---~ 138 (360)
T d1bjna_ 77 QFAAVPLNIL---------GDKTTADYVDAGYWAASAIKEAKKYCTPNV--FDA----KVTVDGLRAVKPMREWQL---S 138 (360)
T ss_dssp HHHHHHHHHC---------TTCCEEEEEESSHHHHHHHHHHTTTSEEEE--EEC----EEEETTEEEECCGGGCCC---C
T ss_pred HHhhhhhccc---------ccccccceecccchhhhhHHHHhhcCccce--eec----cccCCCcchhhhhhhhcc---C
Confidence 6555443322 244456665544333222211111000000 000 000000022333333332 4
Q ss_pred eEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCccccccCCCCcceeeccccccCCCcceeE
Q 012138 225 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 304 (470)
Q Consensus 225 ~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~~~~~~~~~~pdi~s~sK~l~gG~~~ig~ 304 (470)
++++++...+|.||...+ ++.+ .++.+++++++|.+++ ++ +. .++.++++.++.+.+|.++++. ..+.
T Consensus 139 ~~~v~v~~~~~~t~~~~~----~~~i--~~~~~~~~v~vDa~~~-~~--~~--~vd~~~~dv~~~ss~k~~~~~~-~~~~ 206 (360)
T d1bjna_ 139 DNAAYMHYCPNETIDGIA----IDET--PDFGADVVVAADFSST-IL--SR--PIDVSRYGVIYAGAQKNIGPAG-LTIV 206 (360)
T ss_dssp SSCSCEEECSEETTTTEE----CCCC--CCCCTTCCEEEECTTT-TT--SS--CCCGGGCSEEEEETTTTTSSTT-CEEE
T ss_pred CceeEEEecccccccCcc----ccce--ecccccceeeeeeecc-cc--ce--eeeeccceeEEEEcccccccCC-Ccee
Confidence 455554455778888876 3333 4677899999998876 21 11 1344455567788889998665 5666
Q ss_pred EEecHHHHhhcCcC-----------CccCCCCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHhhCC
Q 012138 305 VLADKEVMLCIQPG-----------EHGSTFGGNPLASAVAIASLDVIRDEK----LAERSAHLGEELRQHLFKIQQQFP 369 (470)
Q Consensus 305 v~~~~~~~~~~~~~-----------~~~~t~~~~~~~~aaa~a~l~~~~~~~----~~~~~~~~~~~l~~~L~~l~~~~p 369 (470)
++.++...+..... .........+.....+........... ..++.++....+...+........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (360)
T d1bjna_ 207 IVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRN 286 (360)
T ss_dssp EEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEC
T ss_pred EeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 66655443322211 111122233333333333333222222 222222233223222222111100
Q ss_pred CceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 012138 370 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~iR~~~~~~~t~e~i~~~~~~l~~~l~ 442 (470)
......+.. ....+.+... .+..++.+.|.++||.+..++. +.+|++....+|+|||+++++.|++..+
T Consensus 287 ~~~~~~rs~-~v~~f~~~~~---~~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 287 DVAKRNRSR-MNVPFQLADS---ALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp CBCGGGBCS-SEEEEEESSG---GGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCcccccc-eEEEEEcCCc---ccHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 000011222 3445555432 4778899999999999877642 3499999889999999999999999765
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=7.3e-12 Score=121.64 Aligned_cols=283 Identities=15% Similarity=0.184 Sum_probs=172.9
Q ss_pred HHHHHHHHhhhhCCCeEEec-CChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccchhcccCCc-ccccCC
Q 012138 119 FPVFAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-EAIRGF 196 (470)
Q Consensus 119 ~~~l~~~l~~~~~~~~v~~~-~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~~~ 196 (470)
.-++..+|+++.|++.+-+. ..|++|...++.+++++. +++.+++.... |..+.......... ++
T Consensus 110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~--------~~~~~~v~~~~-~p~~~~v~~t~a~~~g~---- 176 (437)
T d1wyua1 110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--------GRMGVLVSQGV-HPEYRAVLRAYLEAVGA---- 176 (437)
T ss_dssp HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--------TCCEEEEETTS-CHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhh--------ccccccccccc-ChHHhhhhhhhccccee----
Confidence 45788999999999987444 668888888888887742 34456654444 43333332221110 01
Q ss_pred CCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEeccccCCcccCCc
Q 012138 197 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 276 (470)
Q Consensus 197 ~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~g~g~~G~~ 276 (470)
.++.++.++.... ..+.++++++|+++. .|..|.+.+ ++++.+++++.|.++|.|.-...++-.-
T Consensus 177 -----~vv~v~~~~~~~~---~~~~~~~~Aavmi~~-Pnt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~-- 241 (437)
T d1wyua1 177 -----KLLTLPLEGGRTP---LPEVGEEVGAVVVQN-PNFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLK-- 241 (437)
T ss_dssp -----EEEEECCBTTBCC---CCCCCTTEEEEEEES-SCTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBC--
T ss_pred -----eEEeeecccccch---hhhhccceeEEEEcc-ccccccccc----hHHHHHHhhhccceEEeeechhhhhccc--
Confidence 1233333221110 111234899999877 566898876 8999999999999988875433221111
Q ss_pred cccccCCCCcceeec-ccccc-----CCCcceeEEEecHHHHhhcCcCC-----------------------------cc
Q 012138 277 LASDWEEVRPDMVIL-GKALG-----GGVIPVSAVLADKEVMLCIQPGE-----------------------------HG 321 (470)
Q Consensus 277 ~~~~~~~~~pdi~s~-sK~l~-----gG~~~ig~v~~~~~~~~~~~~~~-----------------------------~~ 321 (470)
....+|. |++.. +|.++ ||- ..|.+.+++++...+.... .+
T Consensus 242 -~Pg~~Ga--Di~~g~~q~fg~p~g~GGP-~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekats 317 (437)
T d1wyua1 242 -PPGAYGA--DIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKS 317 (437)
T ss_dssp -CHHHHTC--SEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSC
T ss_pred -ccccccc--ceEeeccceeccccCCCcC-ccccccccchhhccccccccccccccCCcccceeeccccccccccccccc
Confidence 1122233 66522 34443 555 7788889988876653210 12
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccceeEEEEeccCCCchhHHHH
Q 012138 322 STFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 398 (470)
Q Consensus 322 ~t~~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 398 (470)
+.++.+.+.+..+...+..+..+ ++.++...+++++.++|.++. .+..+.....|--+.+..+. ++.++
T Consensus 318 nict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~-----g~~~~~~~~~f~ef~v~~~~---~~~~i 389 (437)
T d1wyua1 318 NITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP-----GVRPFTPKPFFNEFALALPK---DPEAV 389 (437)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST-----TCEECSCSSBCSEEEEECSS---CHHHH
T ss_pred chhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcC-----CeeccCCCCeeeEEEEECCC---CHHHH
Confidence 23445555555555666666553 345556667778887776641 23333333333334344333 68899
Q ss_pred HHHHHHcCceec----c-CCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 012138 399 CLKMKERGILAK----P-THDTIVRLTPPLSISSNELQEGSKALHDVL 441 (470)
Q Consensus 399 ~~~l~~~Gv~~~----~-~~~~~iR~~~~~~~t~e~i~~~~~~l~~~l 441 (470)
.++|.++|+... + ...+.+.++|.-..|++|||+++++|++++
T Consensus 390 ~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 390 RRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp HHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 999999999742 2 136789999999999999999999999875
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.40 E-value=1.1e-11 Score=119.40 Aligned_cols=289 Identities=15% Similarity=0.099 Sum_probs=167.9
Q ss_pred HHHHH-HHHhhhhCCCeE-----EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCc-----cccccch--hc
Q 012138 119 FPVFA-ERLTSMFGYDMV-----LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF-----HGRTLAA--IS 185 (470)
Q Consensus 119 ~~~l~-~~l~~~~~~~~v-----~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~y-----hg~~~~~--~~ 185 (470)
.+.++ ++..++++.+.. +=..||+.||.+++.++.+ ||+ .|+..+... ||..... ..
T Consensus 74 iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~---------pgD-~Im~l~l~~GGHlshg~~~~~~~~~ 143 (463)
T d2a7va1 74 IELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ---------PHD-RIMGLDLPDGGHLTHGYMSDVKRIS 143 (463)
T ss_dssp HHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---------SCE-ECCC---------------------
T ss_pred HHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcC---------CCc-eEEeeccCcCccccccccccccccc
Confidence 44443 445566776642 5567899999999887765 566 666655442 2211111 11
Q ss_pred ccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEec
Q 012138 186 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 265 (470)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~De 265 (470)
.++. .+....-...+....+ |.+++++..++. ++++|++-. +..-...| +++++++|++.|++|++|-
T Consensus 144 ~~g~-~~~~~~Y~~d~~~~~I---Dyd~~~~~a~~~--kPklIi~G~--S~y~r~~d----~~~~reIad~vga~l~~D~ 211 (463)
T d2a7va1 144 ATSI-FFESMPYKLNPKTGLI---DYNQLALTARLF--RPRLIIAGT--SAYARLID----YARMREVCDEVKAHLLADM 211 (463)
T ss_dssp -----------CCBCTTTCSB---CHHHHHHHHHHH--CCSEEEECC--SSCCSCCC----HHHHHHHHHHTTCEEEEEC
T ss_pred ceee-EeeeeeeeccCCCCcC---cHHHHHHHHhhc--CCceEEecc--cccccccC----HHHHHHHhhcccceEEech
Confidence 1111 0100000111222334 899999999887 778888755 22233444 9999999999999999999
Q ss_pred ccc-CCcccCCccccccCCCCcceeecc--ccccCCCcceeEEEecH---------------HHHhhcCcCCccCCCCCC
Q 012138 266 IQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADK---------------EVMLCIQPGEHGSTFGGN 327 (470)
Q Consensus 266 v~~-g~g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~---------------~~~~~~~~~~~~~t~~~~ 327 (470)
+|. |+.-.|..- +.+.. .|+++.+ |+|.|. |-|.|+.++ ++.+.+......+..+++
T Consensus 212 aH~aGLIA~g~~~--sP~~~-aDvvt~tTHKTlrGP--rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggp 286 (463)
T d2a7va1 212 AHISGLVAAKVIP--SPFKH-ADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP 286 (463)
T ss_dssp GGGHHHHHTTSSC--CGGGT-CSEEEEESSGGGCSC--SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSC
T ss_pred hhhhHHhhhhhhc--Chhhh-hhhhhchhhhhhcCC--CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhh
Confidence 998 664444331 22222 3888655 888865 777788765 233333221122222322
Q ss_pred HH-HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEec--cceeEEEEeccCCCchhHHHHHHH
Q 012138 328 PL-ASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLK 401 (470)
Q Consensus 328 ~~-~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 401 (470)
.+ .+++...++....+ +.+.+++.++++.|.+.|.+.+ +..+.+ ...++++.+... +.+...+.+.
T Consensus 287 h~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G------~~vv~ggTdnHlvlvdl~~~--~~~G~~ae~~ 358 (463)
T d2a7va1 287 HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERG------YSLVSGGTDNHLVLVDLRPK--GLDGARAERV 358 (463)
T ss_dssp CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEECTTT--TCCHHHHHHH
T ss_pred hhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCC------CeeecCCCCCceeeeecccc--CCCHHHHHHH
Confidence 23 33333334454333 4577778888888888887743 333222 234555655332 2467778888
Q ss_pred HHHcCceec----cC-----CCCEEEEecCC----CCCHHHHHHHHHHHHHHHh
Q 012138 402 MKERGILAK----PT-----HDTIVRLTPPL----SISSNELQEGSKALHDVLE 442 (470)
Q Consensus 402 l~~~Gv~~~----~~-----~~~~iR~~~~~----~~t~e~i~~~~~~l~~~l~ 442 (470)
|.+.||.+. |+ .+..|||..|. .+.++|+.++.+.|.+++.
T Consensus 359 Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 359 LELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 888899875 32 25579997653 4678999999999988875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=2.8e-10 Score=111.77 Aligned_cols=332 Identities=18% Similarity=0.168 Sum_probs=188.6
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCC-Cc-------HHHHHHHHhhhhCCCeEEe-cCChhHHHHHHHHHHHHhchhccc
Q 012138 91 HCHPKIMKALQEQAEKLTLSSRAFYN-DK-------FPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKK 161 (470)
Q Consensus 91 ~~~p~v~~a~~~~~~~~~~~~~~~~~-~~-------~~~l~~~l~~~~~~~~v~~-~~sGteA~~~al~~~~~~~~~~~~ 161 (470)
|-+|.+.+.+.+ .++ .+..|.. +. .-++..++++++|+|.+-. ...|..|...|+.++++++..++.
T Consensus 76 hy~P~v~~~~~~---~~T-aYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~ 151 (471)
T d1wyub1 76 KYNPKLHEEAAR---LFA-DLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGE 151 (471)
T ss_dssp CCCCHHHHHHHH---TTS-SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCcchhhhHHH---HHh-ccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhccc
Confidence 456788877653 222 2223332 22 2367788999999987533 356777777777777664322211
Q ss_pred CCCCCcEEEEEccCccccccchhcccCCcccccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCcccc
Q 012138 162 FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 241 (470)
Q Consensus 162 ~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~ 241 (470)
.....++...+.+|..................... .. ..+.+.++....+ +++++++..+++.++...
T Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~---~~a~v~v~~p~~~g~~e~ 219 (471)
T d1wyub1 152 --GRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP----EG---EVDLEALKRELGP---HVAALMLTNPNTLGLFER 219 (471)
T ss_dssp --TTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT----TS---SBCHHHHHHHCST---TEEEEEECSSCTTSCCCT
T ss_pred --ccccccccCCcccccceeeeeecccceeecccccc----cc---cccchhhhhhhhc---cccceeeccCCCcccccc
Confidence 12224444555544433322222221111000000 00 1156766665544 788888777455444333
Q ss_pred CChhhHHHHHHHHHhcCcEEEEeccccC----CcccCCccccccCCCCcceee--cccccc-----CCCcceeEEEecHH
Q 012138 242 PPDGYLKAVRDLCSKYNILMIADEIQSG----LARSGRMLASDWEEVRPDMVI--LGKALG-----GGVIPVSAVLADKE 310 (470)
Q Consensus 242 ~~~~~l~~l~~l~~~~gillI~Dev~~g----~g~~G~~~~~~~~~~~pdi~s--~sK~l~-----gG~~~ig~v~~~~~ 310 (470)
. .+++.++++++|..+++|-+.-. +...|. ++. |+++ .++.++ ||. .+|++.++++
T Consensus 220 ~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~------~g~--div~vg~~q~~G~P~~~GGP-~~G~~a~~~~ 286 (471)
T d1wyub1 220 R----ILEISRLCKEAGVQLYYDGANLNAIMGWARPGD------MGF--DVVHLNLHKTFTVPHGGGGP-GSGPVGVKAH 286 (471)
T ss_dssp T----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHH------HTC--SEEECCTTTTTCCCCTTSCC-CCCCEEECGG
T ss_pred h----hhhhHHHHHhccccccccccchhhhhhccccCc------ccc--cccccccccccccccccccc-cccceeehhh
Confidence 3 78889999999998888754331 111111 111 3332 234443 555 6888999998
Q ss_pred HHhhcCcC-------------------CccCCCCCCHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhC
Q 012138 311 VMLCIQPG-------------------EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF 368 (470)
Q Consensus 311 ~~~~~~~~-------------------~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~ 368 (470)
++..+... ......+.+.+.+.++...+..+.. .++.+....++.++.++|++.+
T Consensus 287 ~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G--- 363 (471)
T d1wyub1 287 LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG--- 363 (471)
T ss_dssp GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred hhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcC---
Confidence 87766311 0111233445555555556666665 4456667778888888886532
Q ss_pred CCceEEEeccceeEEEEeccCCCchhHHHHHHHHHHcCceec----cC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q 012138 369 PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----PT-HDTIVRLTPPLSISSNELQEGSKALHDVLEL 443 (470)
Q Consensus 369 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~----~~-~~~~iR~~~~~~~t~e~i~~~~~~l~~~l~~ 443 (470)
+........|.-+.+..+. +.+..++.++|.++|++-. |. ..+.+.+++.-.+|++|||+++++|+++++
T Consensus 364 ---~~~~~~~~ff~EFvv~~~~-~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~- 438 (471)
T d1wyub1 364 ---YRVPYDGPSMHEFVAQPPE-GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK- 438 (471)
T ss_dssp ---CBCSSCSSCCSCEEEBCST-TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT-
T ss_pred ---ceeccCcceeeEEeecCCC-CCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH-
Confidence 2222222233333333221 2367789999999998642 22 367899999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCcc
Q 012138 444 DLPKMRKPKPADAPATPCHR 463 (470)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~ 463 (470)
|.++..+. +|.+.|.|
T Consensus 439 e~~~~~~~----ap~~~~~~ 454 (471)
T d1wyub1 439 KPKEWLEN----APYSTPVR 454 (471)
T ss_dssp SCHHHHHT----CCCSSSSC
T ss_pred hhHHHHHh----CCcCCCCC
Confidence 98654443 44444433
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.34 E-value=1.1e-10 Score=112.49 Aligned_cols=284 Identities=15% Similarity=0.096 Sum_probs=171.7
Q ss_pred HHHhhhhCCC----eE-EecCChhHHHHHHHHHHHHhchhcccCCCCCcEEEEEccCccccccch------hcccCC-cc
Q 012138 124 ERLTSMFGYD----MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA------ISMSCD-NE 191 (470)
Q Consensus 124 ~~l~~~~~~~----~v-~~~~sGteA~~~al~~~~~~~~~~~~~~~g~~~ii~~~~~yhg~~~~~------~~~~~~-~~ 191 (470)
++..++++.+ .+ +=..||+.|+.+++.++.. ||| .|+..+.. ||..... ...+.. ..
T Consensus 84 ~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~---------pgD-~im~~~l~-~GGHlshg~~~~~~~~~~~~~~ 152 (470)
T d1rv3a_ 84 KRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE---------PHG-RIMGLDLP-DGGHLTHGFMTDKKKISATSIF 152 (470)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC---------TTC-EEEEECGG-GTCCGGGCCBCSSCBCSHHHHH
T ss_pred HHHHHHhCCChhhccccccccCCccHHHHHHHHhcC---------CCC-eEeeeccc-cCCcccccccccCCCcccccce
Confidence 3445667765 23 4457899999999987765 566 77776655 3322221 111100 00
Q ss_pred cccCCCCCCCCeeeecCCCHHHHHHHHHhcCCCeEEEEEccccCCCccccCChhhHHHHHHHHHhcCcEEEEecccc-CC
Q 012138 192 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GL 270 (470)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~d~~~Le~~l~~~~~~~~~vi~epi~n~~G~~~~~~~~l~~l~~l~~~~gillI~Dev~~-g~ 270 (470)
++...-++.++...+ |.+++++..++. ++++|++-. +..-...| +++++++|++.|++|++|-+|. |+
T Consensus 153 ~~~~~y~v~~~~~~I---Dyd~l~~~a~~~--kPklIi~G~--S~y~r~~d----~~~~reIad~vga~l~~D~aH~aGL 221 (470)
T d1rv3a_ 153 FESMAYKVNPDTGYI---DYDRLEENARLF--HPKLIIAGT--SCYSRNLD----YGRLRKIADENGAYLMADMAHISGL 221 (470)
T ss_dssp SEEEEECBCTTTCSB---CHHHHHHHHHHH--CCSEEEECC--SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHH
T ss_pred eEeeEEEEecccCcc---cHHHHHHHHHhh--CcceEeech--hhccccCC----HHHHHHHHhccCCeEEecchhhhhh
Confidence 111011122223334 899999999886 778888755 22223444 9999999999999999999998 66
Q ss_pred cccCCccccccCCCCcceeecc--ccccCCCcceeEEEecHH---------------HHhhcCcCCccCCCCCC-HHHHH
Q 012138 271 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPGEHGSTFGGN-PLASA 332 (470)
Q Consensus 271 g~~G~~~~~~~~~~~pdi~s~s--K~l~gG~~~ig~v~~~~~---------------~~~~~~~~~~~~t~~~~-~~~~a 332 (470)
.-.|.+- +.+.. .|+++.+ |+|.|. |-|.|+.+++ +.+.+......+..+++ .-.+|
T Consensus 222 IA~g~~~--sPl~~-aDvvt~tTHKtlrGP--rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IA 296 (470)
T d1rv3a_ 222 VVAGVVP--SPFEH-CHVVTTTTHKTLRGC--RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIA 296 (470)
T ss_dssp HHHTSSC--CGGGT-CSEEEEESSGGGCCC--SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHH
T ss_pred ccccccC--Chhhe-eeeeeeehhhhccCC--cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHH
Confidence 4444331 22222 3888555 888864 6677877653 44444322222333333 33333
Q ss_pred HHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEEe--ccceeEEEEeccCCCchhHHHHHHHHHHcCc
Q 012138 333 VAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTALPVSAYDICLKMKERGI 407 (470)
Q Consensus 333 aa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~p~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv 407 (470)
+...++..+.. ..+.+++..+++.|.+.|.+.+ +..+. ....++++.+... +.+..++.+.|.+.||
T Consensus 297 a~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G------~~v~~ggTdnHlvlvdl~~~--g~~g~~ae~~Le~~gI 368 (470)
T d1rv3a_ 297 GVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG------YKIVTGGSDNHLILVDLRSK--GTDGGRAEKVLEACSI 368 (470)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT------CEEGGGSCSSSEEEEEGGGG--TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCC------ceeccCCCCCceEEEeeccc--CCcHHHHHHHHHHcCc
Confidence 33345555433 4566677777888877777743 32222 2345666655332 2366777777888899
Q ss_pred eec----cC-----CCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 012138 408 LAK----PT-----HDTIVRLTPP----LSISSNELQEGSKALHDVLE 442 (470)
Q Consensus 408 ~~~----~~-----~~~~iR~~~~----~~~t~e~i~~~~~~l~~~l~ 442 (470)
.+. |+ .++.+||..| ..+.++|+.++.+.|.++++
T Consensus 369 ~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 369 ACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp ECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCcCCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 874 33 2567999765 34788999999999999886
|