Citrus Sinensis ID: 012139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC
Secondary Structure (PSIPRED)
cccccccEEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHcccEEEEEccEEEEEEEEEcccccccccccccccEEEcccccEEEEEcccHHHHHHHccccccEEEEEccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEcccccccccHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccEEEcHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEEccEEEEEccccccccccHHccccccccccccccEEEEcccccccccccccccccEEcccccccEcccEEEEEEccccccccccccccccccHHHHHcccccccccccccHHHHHcEEEEEcccEEEEEEccccccccccEEcccccEEEcccccEEEEEcccHHHHcccccccccEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHEEEccccccccHHHHccccHHHHccccHHHHHHHHHHHHccccHHHcccccccEEEEEEEccHHHccHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEccccEEEEEHHHHHHccccHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mmmiestlavrfpagsnfcssaalshsrsichaedvtgvhvtsrrpfpsgcsnvpwnrfrrvngnpcvtrsnvtkkriqasasdpvkknertsyhpfediadstlkngEEARLTAAETSRTIIEVnstatlmftdftnggaheniiwpdlpyvtdehgniyIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAglseidfgideiddedsdvedededededeededydenwvnvlededdedemlgDWAKLEtmrsshpmyFAKKLSevisddpidwmeqppagitiqgllrpalieehsdiqrhrssnqyhdvdnsknvvvgnnqedlhvinghrnesepsrngseeskkddkpmngtsfyKLEMTKIQPILAHAHQAAVDIEdyrkaqpdvIAHSAANIISRLKAGGEKTTQALKSLCWrtkgiqveeeAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC
Flexible Loop (DISEMBL)
MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTgvhvtsrrpfpsgcsnvpwnrfrrvngnpcvtrsnvtkkriqasasdpvkknertsyhpfediadstlkngEEARLTAaetsrtiievnSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEdededededeededydenwvnvlededdedEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHrssnqyhdvdnsknvvVGNNQEDLhvinghrnesepsrngseeskkddkpmNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIqtlrfafntrvc
Low Complexity Region (SEG)
MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSeidfgideiddedsdvedededededeededydeNWVNVLededdedeMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC
Disordered region (IsUnstruct)
********AVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVT**************************************************RTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGI**********************************************W**********PMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALI****************************************************************FYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNT***
Disordered Region (DISOPRED)
*******LAVRFPAGSNFCSSAALSHSRSICH*EDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSN********************************************ETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMEL*******F****IDD**SDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQ******************VGNNQEDLHVI**********************PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC
Disordered Region (DISEMBL)
MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKK**************RTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDD*********************DENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHR******************PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC
Disordered Region (DISPRO)
MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVK*NERTSYHPFEDIADST*****EARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGI**********************DEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSN**********************************************MNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTR*C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q0WMN5	499	Uncharacterized protein A	no	no	0.951	0.895	0.467	1e-112

>sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2

 Score =  407 bits (1045), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/492 (46%), Positives = 322/492 (65%), Gaps = 45/492 (9%)

Query: 3   MIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTG-VHVTSRRPF-PSGCSNVPWNRFR 60
           MIES +AVR   G  FCSS AL   R+   +E+     H  SRR F P    ++  + F 
Sbjct: 1   MIESVMAVRLSTG--FCSSTALLQYRTAPSSEEGGNCFHYASRRVFQPQRIHHIDGSGFL 58

Query: 61  RVNGNPCVTRSNVTKKRIQA------SASDPVKKNERTSYHPFEDIADSTLKNGEEARLT 114
           + N +  +TR ++ K R QA      SASDP K+  ++ YHP E+I  S  +N  ++RL+
Sbjct: 59  KYNSD-YITRKHLRKNRTQATAEYVDSASDPEKQTGKSRYHPSEEIRASLPQNDGDSRLS 117

Query: 115 AAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSL 174
            AET+RTIIEVN+  TLM T     G HENI+WPD+PY+TD++GN+Y QVK +ED++QS+
Sbjct: 118 PAETTRTIIEVNNKGTLMLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSV 177

Query: 175 ISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDY 234
            SENN+VQVI+GFDT EMIKEMEL GLS+ DF        +++ ++  +D+ ED  +++ 
Sbjct: 178 TSENNYVQVIVGFDTMEMIKEMELMGLSDSDF--------ETEDDESGDDDSEDTGEDED 229

Query: 235 DENWVNVL----------------EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVIS 278
           +E WV +L                +D+ D DE LGDWA LETMRS HPM+FAK+++EV S
Sbjct: 230 EEEWVAILEDEDEDDDDDDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAKRMTEVAS 289

Query: 279 DDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHV 338
           +DP+DWM+QP AG+ IQGLL   L+E++SDIQ+  + +         N     N++  ++
Sbjct: 290 NDPVDWMDQPSAGLAIQGLLSHILVEDYSDIQKKLADS---------NSTTNGNKDAENL 340

Query: 339 INGHRNESEPSRNGSE-ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQ 397
           ++   + S+   + SE +S +D+K  N  +FYKLEM +IQ I A   Q  V++ED RKAQ
Sbjct: 341 VDKLEDNSKAGGDESEIDSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQ 400

Query: 398 PDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQ 457
           PD IAH++A IISRL+  G+K T+ALKSLCWR   IQ EE  +IG+DS+GFDLR+CAG +
Sbjct: 401 PDAIAHASAEIISRLEESGDKITEALKSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAK 460

Query: 458 IQTLRFAFNTRV 469
           I++LRFAF+TR 
Sbjct: 461 IESLRFAFSTRA 472


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,859,483
Number of Sequences: 539616
Number of extensions: 8328291
Number of successful extensions: 122502
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 736
Number of HSP's that attempted gapping in prelim test: 69193
Number of HSP's gapped (non-prelim): 24753
length of query: 470
length of database: 191,569,459
effective HSP length: 121
effective length of query: 349
effective length of database: 126,275,923
effective search space: 44070297127
effective search space used: 44070297127
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
359490595	511	PREDICTED: uncharacterized protein At3g4	0.982	0.904	0.594	1e-142
302143770	506	unnamed protein product [Vitis vinifera]	0.974	0.905	0.591	1e-140
449445979	513	PREDICTED: uncharacterized protein LOC10	0.993	0.910	0.537	1e-134
357498255	524	hypothetical protein MTR_6g052360 [Medic	0.989	0.887	0.547	1e-131
356529119	474	PREDICTED: uncharacterized protein At3g4	0.853	0.845	0.601	1e-130
255545156	461	conserved hypothetical protein [Ricinus	0.868	0.885	0.614	1e-128
356561498	466	PREDICTED: uncharacterized protein At3g4	0.853	0.860	0.586	1e-126
334187889	494	pentatricopeptide repeat-containing prot	0.906	0.862	0.483	1e-112
145358369	481	pentatricopeptide repeat-containing prot	0.906	0.885	0.486	1e-112
110739410	519	hypothetical protein [Arabidopsis thalia	0.951	0.861	0.467	1e-111

>gi|359490595|ref|XP_002274287.2| PREDICTED: uncharacterized protein At3g49140 [Vitis vinifera]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/481 (59%), Positives = 351/481 (72%), Gaps = 19/481 (3%)

Query: 3   MIESTLAVRFPAGSN----FCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNR 58
           MIEST+A RF AG+       S+AA+S+ R+   +++  GVHV SRR   SG  + P  R
Sbjct: 1   MIESTMAFRFRAGAGARAGLFSTAAVSNCRATWSSDEAPGVHVASRRLSHSGSFDAPRTR 60

Query: 59  FRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAET 118
           F  V       R N  K R + SA     +  +  YHPFE+I +S+     EARLTAAET
Sbjct: 61  FIGVTSGSFTKRRNPVKHRFRVSAEHLGSREPQ--YHPFEEIVESSFPESGEARLTAAET 118

Query: 119 SRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISEN 178
           +RT+IEVN+ ATLMF++  N   HENI WP+LPYVTDEHGNIY QV N+EDI+QSL SEN
Sbjct: 119 TRTVIEVNNKATLMFSNLINNEVHENIFWPELPYVTDEHGNIYFQVNNDEDIMQSLTSEN 178

Query: 179 NFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDS--DVEDEDEDEDEDEEDEDYDE 236
           NFVQVIIG DT+EM+ EMEL G +EIDFGI+EI+DEDS  D ED++ D+D+D++DED ++
Sbjct: 179 NFVQVIIGLDTSEMLNEMELTGPAEIDFGIEEIEDEDSDLDYEDDENDDDDDDDDEDDEQ 238

Query: 237 NWVNVLEDEDDEDEM---LGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGIT 293
           +WV +LEDE+D+++    +GDWAKLETMRSSHPM+FAK ++EV S DP+DWM QPPAGI 
Sbjct: 239 DWVAILEDEEDQEDSDEAVGDWAKLETMRSSHPMFFAKTMAEVASGDPVDWMNQPPAGIA 298

Query: 294 IQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQ---EDLHVINGHRNESEPSR 350
           IQGLLRPA IEE S IQ+H SS+Q  + +   N V  N++   EDL  INGH  ES  SR
Sbjct: 299 IQGLLRPAFIEEQSVIQKHISSHQSSNAN--VNQVEKNSEDKAEDLEKINGHGQESGSSR 356

Query: 351 NGS---EESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAAN 407
           + S   E+ +KD   MNG SFYKLEM KI  I AH  QA VD+ED+R AQPD IAHSA+ 
Sbjct: 357 DNSIQAEDIEKDHNMMNGFSFYKLEMIKILLISAHGLQAVVDLEDFRNAQPDAIAHSASK 416

Query: 408 IISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNT 467
           IISRLKAGGEKTTQALKSLCWR KGIQVEE  +I VD++GFDLRVC+G Q+QTLRF FNT
Sbjct: 417 IISRLKAGGEKTTQALKSLCWRCKGIQVEEATLIDVDTLGFDLRVCSGRQVQTLRFTFNT 476

Query: 468 R 468
           R
Sbjct: 477 R 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143770|emb|CBI22631.3| unnamed protein product [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/477 (59%), Positives = 345/477 (72%), Gaps = 19/477 (3%)

Query: 8   LAVRFPAGSN----FCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVN 63
           +A RF AG+       S+AA+S+ R+   +++  GVHV SRR   SG  + P  RF  V 
Sbjct: 1   MAFRFRAGAGARAGLFSTAAVSNCRATWSSDEAPGVHVASRRLSHSGSFDAPRTRFIGVT 60

Query: 64  GNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETSRTII 123
                 R N  K R + SA     +  +  YHPFE+I +S+     EARLTAAET+RT+I
Sbjct: 61  SGSFTKRRNPVKHRFRVSAEHLGSREPQ--YHPFEEIVESSFPESGEARLTAAETTRTVI 118

Query: 124 EVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQV 183
           EVN+ ATLMF++  N   HENI WP+LPYVTDEHGNIY QV N+EDI+QSL SENNFVQV
Sbjct: 119 EVNNKATLMFSNLINNEVHENIFWPELPYVTDEHGNIYFQVNNDEDIMQSLTSENNFVQV 178

Query: 184 IIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDS--DVEDEDEDEDEDEEDEDYDENWVNV 241
           IIG DT+EM+ EMEL G +EIDFGI+EI+DEDS  D ED++ D+D+D++DED +++WV +
Sbjct: 179 IIGLDTSEMLNEMELTGPAEIDFGIEEIEDEDSDLDYEDDENDDDDDDDDEDDEQDWVAI 238

Query: 242 L---EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLL 298
           L   ED++D DE +GDWAKLETMRSSHPM+FAK ++EV S DP+DWM QPPAGI IQGLL
Sbjct: 239 LEDEEDQEDSDEAVGDWAKLETMRSSHPMFFAKTMAEVASGDPVDWMNQPPAGIAIQGLL 298

Query: 299 RPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQ---EDLHVINGHRNESEPSRNGS-- 353
           RPA IEE S IQ+H SS+Q  + +   N V  N++   EDL  INGH  ES  SR+ S  
Sbjct: 299 RPAFIEEQSVIQKHISSHQSSNAN--VNQVEKNSEDKAEDLEKINGHGQESGSSRDNSIQ 356

Query: 354 -EESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRL 412
            E+ +KD   MNG SFYKLEM KI  I AH  QA VD+ED+R AQPD IAHSA+ IISRL
Sbjct: 357 AEDIEKDHNMMNGFSFYKLEMIKILLISAHGLQAVVDLEDFRNAQPDAIAHSASKIISRL 416

Query: 413 KAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRV 469
           KAGGEKTTQALKSLCWR KGIQVEE  +I VD++GFDLRVC+G Q+QTLRF FNTR 
Sbjct: 417 KAGGEKTTQALKSLCWRCKGIQVEEATLIDVDTLGFDLRVCSGRQVQTLRFTFNTRA 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445979|ref|XP_004140749.1| PREDICTED: uncharacterized protein LOC101209928 [Cucumis sativus]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/495 (53%), Positives = 342/495 (69%), Gaps = 28/495 (5%)

Query: 3   MIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSR--RPFPSGCSNVPWNRFR 60
           MIE+ LAVRFPAG+NFC S+A+S+ R    +EDVT +   S   R   S  S+V W R +
Sbjct: 1   MIETALAVRFPAGANFCYSSAVSYHRPAWTSEDVTSIGNASSFCRLLHSCTSDVHWKRCQ 60

Query: 61  RVNGNPCVTRSNVTKKRIQASA------SDPVKKNERTSYHPFEDIADSTLKNGEEARLT 114
           R+N    + RS + K  IQASA      SDP+K+N    YHP E++  S  +  ++ R T
Sbjct: 61  RLNSRSLLGRSYLKKIGIQASAEPLGSASDPIKQNRGLQYHPSEELVKSITEIADDVRPT 120

Query: 115 AAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSL 174
           +AET+RTIIEVNS ATLMF    N    ENIIWP+LPYVTD HGNIY Q KN E+ +++L
Sbjct: 121 SAETTRTIIEVNSKATLMFAGLINDEVQENIIWPELPYVTDAHGNIYFQAKNTEEAMKNL 180

Query: 175 ISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEI---------------DDEDSDVE 219
            SENNFVQV+IG DT EMI EMEL G SEIDFG +E+                +++ + +
Sbjct: 181 TSENNFVQVLIGIDTMEMINEMELFGPSEIDFGFEELDDGASDDGDDDDDGDGEDEDEDD 240

Query: 220 DEDEDEDEDEEDEDYDENWVNVLEDEDDE---DEMLGDWAKLETMRSSHPMYFAKKLSEV 276
           DEDED+D+D+ D++Y+ +WV+V++DEDD+   DE LGDWAKLETMRSSHPM+FA KLSE+
Sbjct: 241 DEDEDDDDDDADDEYNRDWVSVIDDEDDQNHSDETLGDWAKLETMRSSHPMHFANKLSEI 300

Query: 277 ISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDL 336
            SDDPIDWMEQPPA + IQG+LRPA  EE + I++H SS    + D ++   +  N E  
Sbjct: 301 ASDDPIDWMEQPPATLVIQGVLRPAFNEEQTVIEKHLSSRHLSNGDINEAQELEENLEGH 360

Query: 337 HVINGHRNESEPSRNGSE--ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYR 394
             IN H +ES  S++G    E+  +  P +  SFY+LEM K+Q    ++H + V+IED  
Sbjct: 361 GRINHHGHESSSSKDGLNLMEALDESIPASEASFYRLEMIKVQLFTGNSHPSNVEIEDLM 420

Query: 395 KAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCA 454
           KAQPD IAHSA  IISRL+AGGEKTTQALKSLCWR KGIQVEE  + G+DS+GFD+RVC+
Sbjct: 421 KAQPDAIAHSAEKIISRLRAGGEKTTQALKSLCWRCKGIQVEEAVINGIDSLGFDVRVCS 480

Query: 455 GTQIQTLRFAFNTRV 469
            TQ+QTLRFAF+TR 
Sbjct: 481 ETQVQTLRFAFDTRA 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498255|ref|XP_003619416.1| hypothetical protein MTR_6g052360 [Medicago truncatula] gi|355494431|gb|AES75634.1| hypothetical protein MTR_6g052360 [Medicago truncatula]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/493 (54%), Positives = 341/493 (69%), Gaps = 28/493 (5%)

Query: 1   MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHV----TSRRPFPSGCSNVPW 56
           MM+I+  +A RF   S+    + L ++RS  +AEDV G  +    + R     G  + PW
Sbjct: 1   MMIIDPPIATRFHLSSSSTRFSNLHNNRSTWNAEDVNGGGLGYVASCRLACSCGGFDAPW 60

Query: 57  NRFRRVNGNPCVTRSNVTKKRIQASAS------DPVKKNERTSYHPFEDIADSTLKNGEE 110
            R ++  G P   R+ + K RI+ S+       +PVKKNE+ SYHPFE+IA STL+  E+
Sbjct: 61  IRSKKYLGTPFPRRNKLVKNRIRVSSQHPSSDQEPVKKNEKPSYHPFEEIAASTLEISED 120

Query: 111 ARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDI 170
            RLTAAETSRT+IEVNS AT++F+ F N   H+NI+WPDLPY+TDEHGNIY Q K  EDI
Sbjct: 121 VRLTAAETSRTVIEVNSKATMVFSTFVNDEYHDNIVWPDLPYLTDEHGNIYFQAKPGEDI 180

Query: 171 LQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDE-----DE 225
           LQSL SENNFVQVI+G DT EMI EM+L+G SEIDFGI+EIDDED+D  D+ +     +E
Sbjct: 181 LQSLTSENNFVQVIVGVDTMEMISEMDLSGPSEIDFGIEEIDDEDTDDLDDSDVEDDVNE 240

Query: 226 DEDEEDEDYDENWVNVLE----DEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDP 281
           +ED E+EDYD  W+ VL      +DD+DE L DWAKLETMR SHPM FAKKL+E+ SDDP
Sbjct: 241 NED-ENEDYDSEWLAVLSDDDELDDDDDEALADWAKLETMRFSHPMDFAKKLTEIASDDP 299

Query: 282 IDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVING 341
           IDWMEQPPA +  QG++RPA IEE+S IQ+H S+NQ    + SK  V  N +E +  ING
Sbjct: 300 IDWMEQPPACVVFQGVIRPAFIEENSPIQKHLSANQSSTAEISK--VTENKEESVGAING 357

Query: 342 HRNESEPSRNGS----EESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQ 397
           H +  E S + +    E ++  D P + TSFY+LE+ KIQ   AH H   +++EDY KAQ
Sbjct: 358 HEHNKESSEDNASQKVENNENGDTPSDETSFYRLEIVKIQVFSAHGHPVVLEVEDYTKAQ 417

Query: 398 PDVIAHSAANIISRLKAGG--EKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAG 455
           PD IA S++ IIS LKA G  EKT QALKSLCW  KGIQVEE  +I VDS+GFD+RVC+G
Sbjct: 418 PDAIARSSSKIISHLKAAGESEKTLQALKSLCWICKGIQVEEAQLICVDSLGFDVRVCSG 477

Query: 456 TQIQTLRFAFNTR 468
           TQ+QTLRF F  R
Sbjct: 478 TQVQTLRFGFKKR 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529119|ref|XP_003533144.1| PREDICTED: uncharacterized protein At3g49140-like [Glycine max]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/414 (60%), Positives = 314/414 (75%), Gaps = 13/414 (3%)

Query: 66  PCVTRSNVTKKRIQAS------ASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETS 119
           P   R  + K RI+AS      A DPVKKNE+ SYHPFE+++ ST +N E+A LT AETS
Sbjct: 29  PFTRRDKLVKNRIRASSEHLGSAQDPVKKNEKPSYHPFEEVSVSTSENSEDATLTTAETS 88

Query: 120 RTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENN 179
           RTIIEVNS ATLMF+   +   HENIIWPDLPY+TDEHGNIY QVKN EDILQSL SENN
Sbjct: 89  RTIIEVNSKATLMFSSLISDEFHENIIWPDLPYLTDEHGNIYFQVKNGEDILQSLTSENN 148

Query: 180 FVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWV 239
           FVQVI+G ++ EMI EM+L+G SEIDFGI+EID+ED++  D+ +++++++E+EDYD  WV
Sbjct: 149 FVQVIVGINSMEMISEMDLSGPSEIDFGIEEIDEEDTEDLDDSDEDEDEDENEDYDSEWV 208

Query: 240 NVL-EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLL 298
            V  +DE D+DE L DWAKLE+M+SSHPMYFAKKL+E+ SDDP+DWMEQPPA + IQG++
Sbjct: 209 AVFSDDEQDDDETLADWAKLESMQSSHPMYFAKKLAEIASDDPVDWMEQPPACVAIQGVI 268

Query: 299 RPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGH-RNESEPSRNGSEESK 357
           RPA +EEHS IQ+H S+NQ  D D S++  + +  E++ VINGH  N      N +++ +
Sbjct: 269 RPAFVEEHSTIQKHLSANQSSDTDKSRS--IESKGENIGVINGHVLNSGSSGDNAAQQVE 326

Query: 358 KDDK---PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKA 414
            ++    P   TSFYKLEM KIQ   A     A+++EDY  AQPD+IAHSA+ IISRLKA
Sbjct: 327 NNENSVIPSCETSFYKLEMIKIQVFSAQGQPTALELEDYMNAQPDIIAHSASKIISRLKA 386

Query: 415 GGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTR 468
            GEKT +ALKSLCWR KGIQVEE  +I +DS+GFD+RVC+GTQIQTLRF F  R
Sbjct: 387 DGEKTLEALKSLCWRCKGIQVEEAQLICLDSLGFDVRVCSGTQIQTLRFTFKKR 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545156|ref|XP_002513639.1| conserved hypothetical protein [Ricinus communis] gi|223547547|gb|EEF49042.1| conserved hypothetical protein [Ricinus communis]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 258/420 (61%), Positives = 320/420 (76%), Gaps = 12/420 (2%)

Query: 57  NRFRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAA 116
           ++F R++    + RS   KK I+AS     + + R  YHPFEDIA+ST +N  +A LT  
Sbjct: 7   SKFGRLDRGSFLRRS--LKKTIRASLE---QNDGRRQYHPFEDIAESTSENSGDAMLTPQ 61

Query: 117 ETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLIS 176
           E +RTI+EVNS ATLM T   N   HENIIWPD+PYVTDE GNIY QVKN+EDILQ++ S
Sbjct: 62  EIARTIVEVNSKATLMLTGLINDDIHENIIWPDVPYVTDEQGNIYFQVKNDEDILQTISS 121

Query: 177 ENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDE 236
           ENNFVQ IIGFDT EM+ EMEL G SEIDFGI+ IDDEDSD+ED++++++++++ ++  +
Sbjct: 122 ENNFVQAIIGFDTMEMMTEMELLGPSEIDFGIEGIDDEDSDIEDDEDEDEDEDDADEDYD 181

Query: 237 NW-VNVL--EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGIT 293
           +  V VL  EDE+D++E LGDWAKLETMRSSHPMYFAKKL++V SDDPIDWMEQPPAG+ 
Sbjct: 182 DDSVAVLEDEDEEDDNETLGDWAKLETMRSSHPMYFAKKLAQVASDDPIDWMEQPPAGLA 241

Query: 294 IQGLLRPALIEEHSDIQRHRSSNQYHDVD-NSKNVVVGNNQEDLHVINGHRNE---SEPS 349
           IQGL+RPA IEEHSDIQ+H S N  H+ D N     V +  E+   INGH +E   SE +
Sbjct: 242 IQGLIRPAFIEEHSDIQKHMSGNLSHNSDINETGKNVDSKLENDSGINGHEHEPGISEDN 301

Query: 350 RNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANII 409
             G+EES+KD  P NGTSFYKLEM KIQ I +   Q  V+ ED+RKAQPD IAHS+  I+
Sbjct: 302 SVGAEESQKDKAPRNGTSFYKLEMIKIQLISSLGQQTVVEEEDFRKAQPDAIAHSSGKIL 361

Query: 410 SRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRV 469
           SRLKAGGEK TQALKSLCWR KG+QVEE AVI VDS+GFD RVC+ T+I+TLRF+FN+R+
Sbjct: 362 SRLKAGGEKITQALKSLCWRCKGLQVEEAAVISVDSLGFDARVCSETKIETLRFSFNSRI 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561498|ref|XP_003549018.1| PREDICTED: uncharacterized protein At3g49140-like [Glycine max]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/418 (58%), Positives = 312/418 (74%), Gaps = 17/418 (4%)

Query: 66  PCVTRSNVTKKRIQAS------ASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETS 119
           P   R+ + K RI+AS      A DP+KKNE+ SYHPFE++A ST +N E+A LTAAETS
Sbjct: 17  PFTRRNKLVKNRIRASSEHLGSAQDPLKKNEKPSYHPFEEVAVSTSENSEDATLTAAETS 76

Query: 120 RTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENN 179
           RTIIEVNS ATLMF+   +   HENIIWPDLPY+TDEHGNIY QVKN EDILQSL SENN
Sbjct: 77  RTIIEVNSKATLMFSSLISDEFHENIIWPDLPYLTDEHGNIYFQVKNGEDILQSLTSENN 136

Query: 180 FVQVIIGFDTTEMIKEMELAGLSEIDFGI--DEIDDEDSDVEDEDEDEDEDEEDEDYDEN 237
           FVQVI+G ++ EMI EM+L+G SEIDFGI   + +D +   ++ ++++ +++E+EDYD  
Sbjct: 137 FVQVIVGINSMEMISEMDLSGPSEIDFGIEEIDDEDTEDVDDNNEDEDKDEDENEDYDSE 196

Query: 238 WVNVLE---DEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITI 294
           WV V     +++D+DE L DWAKLETMRSSHP+YFAKKL+E+ SDDP+DWMEQPPA + I
Sbjct: 197 WVAVFSDDDEQEDDDETLADWAKLETMRSSHPVYFAKKLAEIASDDPVDWMEQPPACVAI 256

Query: 295 QGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSE 354
           QG++RPA ++EHS IQ+H S+NQ  D D SK+  + +  E++ VINGH   SE S + + 
Sbjct: 257 QGVIRPAFVDEHSTIQKHLSANQSSDTDKSKS--IESKGENIGVINGHVLNSESSGDNAA 314

Query: 355 ESKKDDK----PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIIS 410
           +  +++     P + TSFYKL M KIQ   A     A+++EDY  AQPDVIAHSA+ IIS
Sbjct: 315 QQVENNGNSVIPFSETSFYKLVMIKIQVFSAQGQPTAIELEDYMNAQPDVIAHSASKIIS 374

Query: 411 RLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTR 468
           RLKA GE+T +ALKSLCWR KGIQVEE  +I +DS+GFDLRVC+GTQIQTLRF F  R
Sbjct: 375 RLKADGEETLEALKSLCWRCKGIQVEEAQLICLDSLGFDLRVCSGTQIQTLRFTFKNR 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187889|ref|NP_001190376.1| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana] gi|332005869|gb|AED93252.1| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/488 (48%), Positives = 312/488 (63%), Gaps = 62/488 (12%)

Query: 14  AGSNFCSSAALSHSRSICHAEDVTG--VHVTSRRPF-------PSGCSNVPWNRFRRVNG 64
           A   F SS AL     + + ED  G   HV  RR F        SGC       F +   
Sbjct: 2   AVPGFFSSMALLRHCPVSNTEDGGGSFFHVAPRRTFRPHLLNTSSGCG------FLKCYS 55

Query: 65  NPCVTRSNVTKKRIQA------SASDPVKKNERTSYHPFEDI-ADSTLKNGEEARLTAAE 117
           +  +TR  + + R QA      SASDP K   ++SYHP EDI A    KN  ++RL+  E
Sbjct: 56  D-YITRKYLRRNRTQAIAEYLGSASDPKKPTGKSSYHPSEDIRAYVPEKNPGDSRLSPPE 114

Query: 118 TSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLI-S 176
           T+RTIIEVN   TLM +     G HENI+WPD+PYVTD+HGNIY QVK  EDI+Q+++ S
Sbjct: 115 TARTIIEVNKKGTLMLSGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTS 174

Query: 177 ENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDE 236
           +NN+VQVI+GFDT EMIK+MEL+  S I FGI+EI+D +S+VEDE++ ++++ ED+D DE
Sbjct: 175 DNNYVQVIVGFDTMEMIKDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKD-DE 233

Query: 237 NWVNVLEDEDDED-------EMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPP 289
            WV VLED DDED       E LGDWA LETMR  HPMYFA++++EV S DP++WM+QP 
Sbjct: 234 EWVAVLEDGDDEDNYVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPS 293

Query: 290 AGITIQGLLRPALIEEHSDIQRHRS------SNQYHDVDNSKNVVVG---NNQEDLHVIN 340
           AG+ IQGLL P ++E+HSDIQ+H S      +++  + +NS+ +  G   N  E LHV N
Sbjct: 294 AGLAIQGLLSPVIVEDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEILHVEN 353

Query: 341 GHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDV 400
                                  N   +YKLE+ +IQ I A  HQ  V++ED RKAQPDV
Sbjct: 354 SR---------------------NAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDV 392

Query: 401 IAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQT 460
           IA ++  I++RL+  G+K T+AL+SLCWR  GIQ EE  +IG+DS+GFDLR+C+G QI+T
Sbjct: 393 IACASDGILTRLEEDGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIET 452

Query: 461 LRFAFNTR 468
           LRFAF+ R
Sbjct: 453 LRFAFSIR 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358369|ref|NP_197794.2| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana] gi|332005868|gb|AED93251.1| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/475 (48%), Positives = 307/475 (64%), Gaps = 49/475 (10%)

Query: 14  AGSNFCSSAALSHSRSICHAEDVTG--VHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRS 71
           A   F SS AL     + + ED  G   HV  RR F     N    ++ R N      R+
Sbjct: 2   AVPGFFSSMALLRHCPVSNTEDGGGSFFHVAPRRTFRPHLLNTSSGKYLRRN------RT 55

Query: 72  NVTKKRIQASASDPVKKNERTSYHPFEDI-ADSTLKNGEEARLTAAETSRTIIEVNSTAT 130
               + +  SASDP K   ++SYHP EDI A    KN  ++RL+  ET+RTIIEVN   T
Sbjct: 56  QAIAEYL-GSASDPKKPTGKSSYHPSEDIRAYVPEKNPGDSRLSPPETARTIIEVNKKGT 114

Query: 131 LMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLI-SENNFVQVIIGFDT 189
           LM +     G HENI+WPD+PYVTD+HGNIY QVK  EDI+Q+++ S+NN+VQVI+GFDT
Sbjct: 115 LMLSGLLGIGVHENILWPDIPYVTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDT 174

Query: 190 TEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDED 249
            EMIK+MEL+  S I FGI+EI+D +S+VEDE++ ++++ ED+D DE WV VLED DDED
Sbjct: 175 MEMIKDMELSSPSGIGFGIEEIEDGESEVEDENKGDEDEGEDKD-DEEWVAVLEDGDDED 233

Query: 250 -------EMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPAL 302
                  E LGDWA LETMR  HPMYFA++++EV S DP++WM+QP AG+ IQGLL P +
Sbjct: 234 NYVSDSDESLGDWANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLSPVI 293

Query: 303 IEEHSDIQRHRS------SNQYHDVDNSKNVVVG---NNQEDLHVINGHRNESEPSRNGS 353
           +E+HSDIQ+H S      +++  + +NS+ +  G   N  E LHV N             
Sbjct: 294 VEDHSDIQKHISGCISTGTDKNKERENSEEIFEGIGENESEILHVENSR----------- 342

Query: 354 EESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLK 413
                     N   +YKLE+ +IQ I A  HQ  V++ED RKAQPDVIA ++  I++RL+
Sbjct: 343 ----------NAIQYYKLEIIRIQLITAQGHQTEVEVEDVRKAQPDVIACASDGILTRLE 392

Query: 414 AGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTR 468
             G+K T+AL+SLCWR  GIQ EE  +IG+DS+GFDLR+C+G QI+TLRFAF+ R
Sbjct: 393 EDGDKLTEALRSLCWRNNGIQAEEVKLIGIDSLGFDLRICSGMQIETLRFAFSIR 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739410|dbj|BAF01615.1| hypothetical protein [Arabidopsis thaliana]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/492 (46%), Positives = 322/492 (65%), Gaps = 45/492 (9%)

Query: 3   MIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTG-VHVTSRRPF-PSGCSNVPWNRFR 60
           MIES +AVR   G  FCSS AL   R+   +E+     H  SRR F P    ++  + F 
Sbjct: 21  MIESVMAVRLSTG--FCSSTALLQYRTAPSSEEGGNCFHYASRRVFQPQRIHHIDGSGFL 78

Query: 61  RVNGNPCVTRSNVTKKRIQA------SASDPVKKNERTSYHPFEDIADSTLKNGEEARLT 114
           + N +  +TR ++ K R QA      SASDP K+  ++ YHP E+I  S  +N  ++RL+
Sbjct: 79  KYNSD-YITRKHLRKNRTQATAEYVDSASDPEKQTGKSRYHPSEEIRASLPQNDGDSRLS 137

Query: 115 AAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSL 174
            AET+RTIIEVN+  TLM T     G HENI+WPD+PY+TD++GN+Y QVK +ED++QS+
Sbjct: 138 PAETTRTIIEVNNKGTLMLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSV 197

Query: 175 ISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDY 234
            SENN+VQVI+GFDT EMIKEMEL GLS+ DF        +++ ++  +D+ ED  +++ 
Sbjct: 198 TSENNYVQVIVGFDTMEMIKEMELMGLSDSDF--------ETEDDESGDDDSEDTGEDED 249

Query: 235 DENWVNVL----------------EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVIS 278
           +E WV +L                +D+ D DE LGDWA LETMRS HPM+FAK+++EV S
Sbjct: 250 EEEWVAILEDEDEDDDDDDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAKRMTEVAS 309

Query: 279 DDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHV 338
           +DP+DWM+QP AG+ IQGLL   L+E++SDIQ+  + +         N     N++  ++
Sbjct: 310 NDPVDWMDQPSAGLAIQGLLSHILVEDYSDIQKKLADS---------NSTTNGNKDAENL 360

Query: 339 INGHRNESEPSRNGSE-ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQ 397
           ++   + S+   + SE +S +D+K  N  +FYKLEM +IQ I A   Q  V++ED RKAQ
Sbjct: 361 VDKLEDNSKAGGDESEIDSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQ 420

Query: 398 PDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQ 457
           PD IAH++A IISRL+  G+K T+ALKSLCWR   IQ EE  +IG+DS+GFDLR+CAG +
Sbjct: 421 PDAIAHASAEIISRLEESGDKITEALKSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAK 480

Query: 458 IQTLRFAFNTRV 469
           I++LRFAF+TR 
Sbjct: 481 IESLRFAFSTRA 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2081182	459	AT3G59300 "AT3G59300" [Arabido	0.259	0.265	0.379	1.4e-42

TAIR|locus:2081182 AT3G59300 "AT3G59300" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
 Identities = 47/124 (37%), Positives = 79/124 (63%)

Query:   345 ESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHS 404
             E +   N    S++D+  M+ +S Y+LE+  I+ +  +  ++++ ++D++ A+PD++ HS
Sbjct:   302 EVQGDDNPITSSRRDENDMS-SSLYRLEIVGIELLSLYGAESSISLQDFQDAEPDILVHS 360

Query:   405 AANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFA 464
              + II R    G  ++ ALK+LC + KG+  EE  +I VDS+G D+RV AG Q+QT RF 
Sbjct:   361 TSAIIERFNNRGINSSIALKALC-KKKGLHAEEANLISVDSLGMDVRVFAGAQVQTHRFP 419

Query:   465 FNTR 468
             F TR
Sbjct:   420 FKTR 423

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT5G24060 unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49140.1); Has 287 Blast hits to 264 proteins in 72 species- Archae - 0; Bacteria - 18; Metazoa - 77; Fungi - 32; Plants - 41; Viruses - 10; Other Eukaryotes - 109 (source- NCBI BLink). (481 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	3e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	7e-05
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-04
pfam05285	317	pfam05285, SDA1, SDA1	1e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	2e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
pfam05285	317	pfam05285, SDA1, SDA1	6e-04
pfam09073	424	pfam09073, BUD22, BUD22	7e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.001
pfam12253	76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	0.001
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.001
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	0.001
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.001
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.002
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.002
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.002
PRK02363	129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.002
pfam05285	317	pfam05285, SDA1, SDA1	0.003
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.003

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 198 LAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN 237
           ++G   +    DE DD++ D E+ED++ED+DE++ + +E+
Sbjct: 101 ISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 188 DTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDD 247
              +   + +   L + D   D+ D++D + +D+D+ +DEDEE ++  E  +  L D+DD
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE--LEKLSDDDD 186

Query: 248 EDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDW 284
                 D   L   R         KL+   + DP+  
Sbjct: 187 FVWDEDDSEALRQARKD------AKLTA--TADPVKA 215

Length = 509

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 32/48 (66%)

Query: 203 EIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
           E     ++ +D+D D+E+E+ED D  +E+ED ++   +  +DE++E+E
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 7/49 (14%)

Query: 209 DEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNV-------LEDEDDEDE 250
           ++  + D D ++E+E E E++ED D +  W++V         D +DE+E
Sbjct: 89  EQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query: 208 IDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
            ++ +DED  V D+D+D+D+D++  D D++ V++ +D+DD  E
Sbjct: 57  DEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 16/52 (30%), Positives = 35/52 (67%)

Query: 203 EIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGD 254
           + +FG+ + ++++ + ED  +DEDE+++D+D +E   +V   +++EDE   D
Sbjct: 311 DDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 202 SEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
            + +   +  +DEDSD E E  D + D+E E  D       EDE+++DE
Sbjct: 98  DDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDS------EDEEEKDE 140

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 207 GIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHP 266
             DE   E+S  +D D++E+ED + EDY + +  +L D  DE+E     +      +S  
Sbjct: 177 SEDESKSEESAEDDSDDEEEEDSDSEDYSQ-YDGMLVDSSDEEEGEEAPSINYNEDTSES 235

Query: 267 MYFAKKLSEVISDDPIDWMEQPP 289
                      S    D  E  P
Sbjct: 236 ESDESDSEISESRSVSDSEESSP 258

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 200 GLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
           G  E D   +E   +D D ED+D+D +E+EED D  +   +  +++ D+++
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 6/39 (15%)

Query: 213 DEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEM 251
           D DSD E E+E+E ED E ED ++      E+EDD+D+M
Sbjct: 41  DYDSDAEWEEEEEGEDLESEDEED------EEEDDDDDM 73

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 21/40 (52%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 211 IDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
           IDD+D D EDED+D++ED+E+E+ +E  +   +DED+EDE
Sbjct: 153 IDDDDED-EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191

Length = 2849

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 14/96 (14%)

Query: 184 IIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLE 243
            +GFD  E+I E  L    EI   +D+IDDE+ +    DED+D++++  D D++      
Sbjct: 198 ELGFDILELIIERLLKLDVEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDD------ 251

Query: 244 DEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISD 279
           DE++ D       ++E   +   +  ++KL  ++  
Sbjct: 252 DEEESDP------EVERTSTIKEV--SEKLDAIMDL 279

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 190 TEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYD----ENWVNVLEDE 245
             M+++      +E     DE D+E+ + E+E++++ +D++D+D D    EN+ +  ED+
Sbjct: 153 LSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENYFDNGEDD 212

Query: 246 DDEDE 250
           D +D+
Sbjct: 213 DYDDD 217

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/57 (31%), Positives = 37/57 (64%)

Query: 194 KEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
              ++  L++ D   D+ DD+D D +D D+D+D++++DED D++ V+  ++E  E +
Sbjct: 120 YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176

Length = 509

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 205 DFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEM 251
           + G+D+ D+ED D + E+E+ED D  DE+ DE      ED DDED+ 
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDE----EDEDSDDEDDE 369

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 12/46 (26%), Positives = 30/46 (65%)

Query: 209 DEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGD 254
            + +DE+ + +   +D+D+D++D+D  +   + ++ +DD+D+ L D
Sbjct: 55  KKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLED 100

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 14/46 (30%), Positives = 29/46 (63%)

Query: 209 DEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGD 254
           DE ++++ DV  +D+D+D+D++D    ++    L+D+DD+     D
Sbjct: 57  DEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDD 102

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 188 DTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDD 247
                 +E     LS ++  + E++ ED D EDE ++E+E+EE+E+ +       + +DD
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDE-------DFDDD 192

Query: 248 EDEMLGDW 255
           +D+   D+
Sbjct: 193 DDDDDDDY 200

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 194 KEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
           KE E   + E D   DE DD+D D EDED+D+D+D+ED++ +++  + L D+   D+
Sbjct: 43  KEAEEEAMEEED--DDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 212 DDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
            D D D+ D+D   D+D ++ED DE      +DED+EDE
Sbjct: 95  MDGDDDIIDDDILPDDDFDEEDLDE-----EDDEDEEDE 128

Length = 129

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 207 GID--EIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDW 255
           G++  E   E+   + E E   E ++D+D +E W    +++ D++   G+W
Sbjct: 71  GLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE---GEW 118

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 197 ELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDE 250
           E A   E D   D+ DD+D D +D+D+D+DED+EDED D++ ++     DD +E
Sbjct: 47  EEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100

This is a family of uncharacterized proteins. Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
PF10615	83	DUF2470: Protein of unknown function (DUF2470); In	99.53
PF13883	170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	99.46
COG0748	245	HugZ Putative heme iron utilization protein [Inorg	98.91
PRK03467	144	hypothetical protein; Provisional	92.05
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	80.67

>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known

Probab=99.53  E-value=1.4e-14  Score=119.28  Aligned_cols=67  Identities=30%  Similarity=0.434  Sum_probs=52.6

Q ss_pred             Chhhhh-hhHHHHHHHhcCChhhHHHHHHHHHHhcCC-CCCceEEEeecCCCceEEEecCCcceEEEeecCCCCC
Q 012139          398 PDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGI-QVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC  470 (470)
Q Consensus       398 PD~LAa-sAa~IIeHMNeDHadaldAL~~ya~~~~G~-~veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA~  470 (470)
                      |||+++ .+++||+|||+||+   ++|.+||+++.|+ .+.+|+|++||++||+|++   .+.+.+||||++|+.
T Consensus         2 ~dp~~~~~~~~ii~HMN~DH~---d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~   70 (83)
T PF10615_consen    2 PDPLAPEAAARIIEHMNDDHA---DDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVT   70 (83)
T ss_dssp             --TTTTHHHHHHHHHHHHH-H---HHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---
T ss_pred             cCcccHHHHHHHHHHHHHhHH---HHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCC
Confidence            688985 99999999999999   6779999999998 4799999999999999999   245899999999974

; PDB: 3GAS_D 3SWJ_A 2ARZ_B.

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C

Probab=99.46  E-value=5.6e-14  Score=129.73  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=99.8

Q ss_pred             CcCchhhcceeEEEEcCeeEEEEeeeccCccccccccCCCCee----eccCCCEEEEecCchhHhhhhccCCCceEEEEe
Q 012139          111 ARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYV----TDEHGNIYIQVKNEEDILQSLISENNFVQVIIG  186 (470)
Q Consensus       111 ~~lt~aE~aRTivEvN~ka~l~~~~~v~~e~H~~i~w~e~~Y~----~D~~GdiyFqv~~d~~il~~~~~~nn~v~viiG  186 (470)
                      .+-..|+.|||+|...+-|+|--- .......+.-+-.=.+|.    .|.-|+.||=+.+-..--|++. +|+-+.++|.
T Consensus         2 ~~~~aA~~AR~Ll~~~~~g~LsTl-s~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~-~~~r~SL~i~   79 (170)
T PF13883_consen    2 TREEAAELARTLLHQSRWGTLSTL-STQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLK-ADPRVSLTIS   79 (170)
T ss_dssp             -TT-HHHHHHHHHHH-SEEEEEEE---SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHH-H--EEEEEEE
T ss_pred             ChHHHHHHHHHHHhhCCEEEEEec-cCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHh-hCCCEEEEEe
Confidence            456789999999999999887432 122334455555555566    6899999999999888888875 5566676665


Q ss_pred             cchhHHHHhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccccccch
Q 012139          187 FDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHP  266 (470)
Q Consensus       187 ~d~~~~~~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP  266 (470)
                      .....                                          +                                
T Consensus        80 ~~~~~------------------------------------------~--------------------------------   85 (170)
T PF13883_consen   80 EPQGG------------------------------------------D--------------------------------   85 (170)
T ss_dssp             GGGSS------------------------------------------H--------------------------------
T ss_pred             cCCCC------------------------------------------c--------------------------------
Confidence            43320                                          0                                


Q ss_pred             hHHHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCC
Q 012139          267 MYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNE  345 (470)
Q Consensus       267 ~yFAk~l~~~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~  345 (470)
                           |     .+...+.|+.-.+||||+|.++|+..+|...+|++|+.+| .+..+                       
T Consensus        86 -----~-----~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w-----------------------  132 (170)
T PF13883_consen   86 -----C-----DNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHW-----------------------  132 (170)
T ss_dssp             -----H-----HHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-----------------------
T ss_pred             -----c-----cccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCcccc-----------------------
Confidence                 0     0002344556779999999999999888899999999999 44444                       


Q ss_pred             CCCCCCCCcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhh
Q 012139          346 SEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYR  394 (470)
Q Consensus       346 ~d~~~~g~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~  394 (470)
                      .++           . +-|||.||||++++|+||||||+++||+++||.
T Consensus       133 ~~~-----------~-~~hdf~~~rl~i~~v~~vgGFG~~~~i~~~~Y~  169 (170)
T PF13883_consen  133 LPF-----------N-SPHDFFFYRLEIERVYLVGGFGGAAWISAEEYY  169 (170)
T ss_dssp             -GG---------------G--EEEEEEEEEEEEE-SSSS-EEE-HHHHH
T ss_pred             ccc-----------c-ccCccEEEEEEEEEEEEECccCCceEeCHHHhc
Confidence            122           1 348999999999999999999999999999996

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]

Probab=98.91  E-value=3.1e-10  Score=111.57  Aligned_cols=149  Identities=10%  Similarity=0.048  Sum_probs=111.0

Q ss_pred             HhcCCcccccCCCCCeeEEEEEeeecc--ccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCCCCCCCCC
Q 012139          276 VISDDPIDWMEQPPAGITIQGLLRPAL--IEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNG  352 (470)
Q Consensus       276 ~~~~~~~~~md~P~~glsI~G~lrpa~--~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g  352 (470)
                      .+...+.+.=.+--.||+.++......  .--++.++++++.++ ++..|                       +++    
T Consensus        67 il~~~~g~~d~~~~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~~-----------------------~~~----  119 (245)
T COG0748          67 ILLGEPGKGDELALPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPLY-----------------------VDD----  119 (245)
T ss_pred             heecCcCcCChhhccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCceE-----------------------ecC----
Confidence            344555555556667888888877776  455788999999888 66666                       333    


Q ss_pred             CcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhhc-cCC-hhhhhhhHHHHHHHhcCChhhHHHHHHHHHHh
Q 012139          353 SEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRK-AQP-DVIAHSAANIISRLKAGGEKTTQALKSLCWRT  430 (470)
Q Consensus       353 ~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~-A~P-D~LAasAa~IIeHMNeDHadaldAL~~ya~~~  430 (470)
                                 +||.+|++++.+...++|+++    +.+.+.. ... ...+..+.+++.|||++|.   +|+..|++.+
T Consensus       120 -----------~d~~iyis~~arh~~N~~~~p----~vs~m~iedea~a~s~~~r~rl~~hmnAd~~---eai~~yaqv~  181 (245)
T COG0748         120 -----------GDYYIYISEIARHARNLGFNP----KVSVMFIEDEAKAKSAFARKRLREHMNADHA---EAIAEYAQVL  181 (245)
T ss_pred             -----------CceEEEEehHHHHhhccCcCC----chhhheecCchhhhhHHHHHHHHHHhhhHHH---HHHHHHHHHH
Confidence                       689999999999999999999    2222222 122 2235567799999999999   6679999988


Q ss_pred             cCCCCCc-eEEEeecCCCceEEEecCCcceEEEeecCCCC
Q 012139          431 KGIQVEE-EAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRV  469 (470)
Q Consensus       431 ~G~~vee-ArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA  469 (470)
                      .++.... .+|.|||+.|+|+.+....+....|+.|+++.
T Consensus       182 ~~~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~  221 (245)
T COG0748         182 AQLAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAY  221 (245)
T ss_pred             HHHhhhhcchhhcccccccceeeeccCCCceEEeccchhh
Confidence            7765444 44999999999999864445578999999875

>PRK03467 hypothetical protein; Provisional

Probab=92.05  E-value=0.33  Score=45.18  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=52.4

Q ss_pred             HhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccccCCCCCCccccccCCccccccccCCCCCCCCCCCCCcc
Q 012139          276 VISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEE  355 (470)
Q Consensus       276 ~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~  355 (470)
                      .|..++-.|..  =.||-+.|.++++..+|+...|++|..+..-..-                                 
T Consensus        69 TI~~~~~~v~~--I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~---------------------------------  113 (144)
T PRK03467         69 TVNGQPKTVAL--IRGVQFKGEIRRLEGEESDAARKRYNRRFPVARA---------------------------------  113 (144)
T ss_pred             EEcCCCcchhh--ceEEEEEEEEEecChhHHHHHHHHHHHhCcchhc---------------------------------
Confidence            34445555544  2588899999999999889999999998732211                                 


Q ss_pred             cccCCCCCCCeEEEEEEeeeEEEec---CCCc-cccc
Q 012139          356 SKKDDKPMNGTSFYKLEMTKIQPIL---AHAH-QAAV  388 (470)
Q Consensus       356 ~~~~~~~~~DFsFYRLe~erIrlIG---GFGr-a~WV  388 (470)
                              ....+|+|++..|+|++   |||+ ..|-
T Consensus       114 --------~~~~iw~l~l~~iK~tdN~LGFgkKl~w~  142 (144)
T PRK03467        114 --------LSAPVWELRLDEIKMTDNTLGFGKKLHWL  142 (144)
T ss_pred             --------cCCceEEEEEEEEEEeccccccccceEEe
Confidence                    12458999999999999   9995 6663

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=80.67  E-value=1.2  Score=48.16  Aligned_cols=54  Identities=17%  Similarity=0.181  Sum_probs=26.1

Q ss_pred             cceecccCccccccccCcccccccccccch--hHHH-HHHHHHhcCCcccccCCCCC
Q 012139          237 NWVNVLEDEDDEDEMLGDWAKLETMRSSHP--MYFA-KKLSEVISDDPIDWMEQPPA  290 (470)
Q Consensus       237 ~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP--~yFA-k~l~~~~~~~~~~~md~P~~  290 (470)
                      .+|+..+|+++++..+.=|+---|....++  +-.. ..+....|+..+.=+.+..+
T Consensus       107 ~GFAdSDDEdD~~sd~~~WtP~~~t~~~~~~~~~~~r~~~~~~~S~sS~~S~~~~~~  163 (458)
T PF10446_consen  107 AGFADSDDEDDDGSDYEFWTPGATTAATSSSHLDVRRRSSHRRSSDSSIESLSSRRP  163 (458)
T ss_pred             cccccccccccccccceeecccccccccccccccccccccccCCCCCccccccCCcc
Confidence            345555454444567888876554433332  1111 12233445555555555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	99.95
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	99.94
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	99.17
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	99.16
1xhn_A	184	CREG, cellular repressor of E1A-stimulated genes;	99.15
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	98.69
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	98.6
3tgv_A	148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	98.15
1vl7_A	157	Hypothetical protein ALR5027; structural genomics,	96.91

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}

Probab=99.95  E-value=1.3e-27  Score=229.55  Aligned_cols=214  Identities=15%  Similarity=0.117  Sum_probs=160.5

Q ss_pred             CcCCcCchhhcceeEEEEcCeeEEEEeeeccCccccccccCCCCeeeccCCCEEEEecCchhHhhhhccCCCceEEEEec
Q 012139          108 GEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGF  187 (470)
Q Consensus       108 ~~~~~lt~aE~aRTivEvN~ka~l~~~~~v~~e~H~~i~w~e~~Y~~D~~GdiyFqv~~d~~il~~~~~~nn~v~viiG~  187 (470)
                      ..++....++.||+++.-+..|+|---......||-...    +|+.|+.|.+||-+.....=.+.+. .|.-|.+.|.-
T Consensus        21 ~~p~~~~~~~~ar~lL~~~~~g~LaTv~~~dG~P~~s~v----~y~~d~~g~~~~~~s~~~~h~~NL~-~dprvSl~V~~   95 (258)
T 3dnh_A           21 SAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTAT----NIGIEPDGTPFFFAAGLTLHARNME-TDARISVTLAP   95 (258)
T ss_dssp             -----CCHHHHHHHHHHHCCEEEEEEECTTTCCEEEEEE----ECEECTTSCEEEEEETTSHHHHHHH-HCCEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHhCCEEEEEeccCCCCceEEEEE----EEEECCCCCEEEEEeCCcHHHHHHh-hCCCEEEEEec
Confidence            466777889999999999888887643313455666554    5889988999998877654455543 33334444321


Q ss_pred             chhHHHHhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccccccchh
Q 012139          188 DTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPM  267 (470)
Q Consensus       188 d~~~~~~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP~  267 (470)
                      +.                                           .                                  
T Consensus        96 ~~-------------------------------------------~----------------------------------   98 (258)
T 3dnh_A           96 FG-------------------------------------------K----------------------------------   98 (258)
T ss_dssp             GG-------------------------------------------G----------------------------------
T ss_pred             CC-------------------------------------------C----------------------------------
Confidence            00                                           0                                  


Q ss_pred             HHHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccccC-CCCCCccccccCCccccccccCCCCCC
Q 012139          268 YFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYH-DVDNSKNVVVGNNQEDLHVINGHRNES  346 (470)
Q Consensus       268 yFAk~l~~~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~~~-~~y~s~~~~~~~~~e~~~~i~~~~~~~  346 (470)
                                    .+++  ...||+|+|.++++..+|...++++|+.+|.. ..+                       .
T Consensus        99 --------------~d~~--~~~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~-----------------------~  139 (258)
T 3dnh_A           99 --------------GDAL--TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLY-----------------------L  139 (258)
T ss_dssp             --------------SCGG--GSCEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHHH-----------------------T
T ss_pred             --------------CChh--hCCeEEEEEEEEEcCchHHHHHHHHHHHHCcChHHc-----------------------c
Confidence                          0011  13689999999999988889999999999833 223                       1


Q ss_pred             CCCCCCCcccccCCCCCCCeEEEEEEeeeEEEecCCCc-ccccChhhhhc--cCChhhhhhhHHHHHHHhcCChhhHHHH
Q 012139          347 EPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAH-QAAVDIEDYRK--AQPDVIAHSAANIISRLKAGGEKTTQAL  423 (470)
Q Consensus       347 d~~~~g~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGr-a~WVd~eDy~~--A~PD~LAasAa~IIeHMNeDHadaldAL  423 (470)
                      ++               +||.||||++++++|+||||+ ++||+++||.+  +.||+|++.+++||+|||+|| +++   
T Consensus       140 ~~---------------~df~l~rl~~~~v~~v~GFG~~a~~v~~~d~~~~~a~~d~l~~~~~~ii~hmN~dH-d~l---  200 (258)
T 3dnh_A          140 SL---------------PDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIK-GEA---  200 (258)
T ss_dssp             SS---------------TTEEEEEEEEEEEEEEC------CCCCHHHHSCCCTTCHHHHHHHHHHHHHHHTST-THH---
T ss_pred             cC---------------CCeEEEEEEEeEEEEEcccCcccccCCHHHhcccCCCCchhHHHHHHHHHHHHhhH-HHH---
Confidence            22               799999999999999999999 99999999999  889999999999999999999 765   


Q ss_pred             HHHHHHhcCCCCCceEEEeecCCCceEEEecCCcceEEEeecC
Q 012139          424 KSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFN  466 (470)
Q Consensus       424 ~~ya~~~~G~~veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp  466 (470)
                      .+||+ +.|+.++.|+|+|||++|||||+  |  .+.+||+|+
T Consensus       201 ~~~~~-~~~~~~~~a~~~~vD~~G~dl~~--~--~~~~Ri~F~  238 (258)
T 3dnh_A          201 SRLAV-LAGAKTGRWKITSIDPDGIDLAS--A--SDLARLWFA  238 (258)
T ss_dssp             HHHHH-HTTCCCSSCEEEEEETTEEEEEC--S--SCEEEEECS
T ss_pred             HHHHH-hCCCCCCcEEEEEEccCcCEEEE--C--CEEEEeeCC
Confidence            99999 89988899999999999999998  2  379999998

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1

Probab=99.94  E-value=1.8e-26  Score=216.78  Aligned_cols=216  Identities=15%  Similarity=0.141  Sum_probs=165.2

Q ss_pred             CCcCchhhcceeEEEEcCeeEEEEeee-ccCccccccccCCCCeeeccCCCEEEEecCchhHhhhhccCCCceEEEEecc
Q 012139          110 EARLTAAETSRTIIEVNSTATLMFTDF-TNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFD  188 (470)
Q Consensus       110 ~~~lt~aE~aRTivEvN~ka~l~~~~~-v~~e~H~~i~w~e~~Y~~D~~GdiyFqv~~d~~il~~~~~~nn~v~viiG~d  188 (470)
                      +...+.++.+|++++-+..++|---+- ....||-...    +|..|..|.+||-+.....-.+.+. .|.-|.+.|.  
T Consensus         3 ~~~~~~~~~~r~ll~~~~~~~LaT~~~~~dG~P~~s~v----~~~~d~~g~~~f~~s~~s~k~~nl~-~nprvsl~v~--   75 (247)
T 2arz_A            3 SMSVEAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVV----PYCLDAEGRPLILISRIAQHTHNLQ-ADPRCSMLVG--   75 (247)
T ss_dssp             --CHHHHHHHHHHHHHCSEEEEEEECSSSTTCEEEEEE----ECEECTTSCEEEEEETTSHHHHHHH-HCCEEEEEEE--
T ss_pred             CCChHHHHHHHHHHHhCCEEEEEEcCCCCCCcceEEEE----EEEECCCCCEEEEEeChhHHHHHHH-hCCCeEEEEe--
Confidence            345667888999988777666543221 1455776555    4888989999999998876666654 4455555441  


Q ss_pred             hhHHHHhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccccccchhH
Q 012139          189 TTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMY  268 (470)
Q Consensus       189 ~~~~~~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP~y  268 (470)
                      .+                                        + .+                                  
T Consensus        76 ~~----------------------------------------~-~~----------------------------------   80 (247)
T 2arz_A           76 ER----------------------------------------G-AE----------------------------------   80 (247)
T ss_dssp             CT----------------------------------------T-CS----------------------------------
T ss_pred             cC----------------------------------------C-CC----------------------------------
Confidence            00                                        0 00                                  


Q ss_pred             HHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccccC-CCCCCccccccCCccccccccCCCCCCC
Q 012139          269 FAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYH-DVDNSKNVVVGNNQEDLHVINGHRNESE  347 (470)
Q Consensus       269 FAk~l~~~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~~~-~~y~s~~~~~~~~~e~~~~i~~~~~~~d  347 (470)
                                    +++.  -.+|+|.|.++++..+|...++.+|..++.. ..|                       .+
T Consensus        81 --------------~~~~--~~~v~l~G~a~~v~d~e~~~~~~~~~~~~P~~~~~-----------------------~~  121 (247)
T 2arz_A           81 --------------DIQA--VGRLTLLAEARQLAEEEVAAAAERYYRYFPESADY-----------------------HR  121 (247)
T ss_dssp             --------------STTS--SCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTTC-----------------------BT
T ss_pred             --------------Chhh--CceEEEEEEEEECCcHHHHHHHHHHHHHCcChhhc-----------------------cc
Confidence                          0011  3589999999999865567889999887732 222                       11


Q ss_pred             CCCCCCcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhhccCChhhhh-hhHHHHHHHhcCChhhHHHHHHH
Q 012139          348 PSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAH-SAANIISRLKAGGEKTTQALKSL  426 (470)
Q Consensus       348 ~~~~g~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~A~PD~LAa-sAa~IIeHMNeDHadaldAL~~y  426 (470)
                                     .+||.||||++++++|++|||+++||++++|..+  |+++. .+++||+|||+||+   ++|.+|
T Consensus       122 ---------------~~~~~l~rl~~~~~~~~~gfG~~~~v~~~~~~~a--dp~~~~~~~~ii~hmN~dH~---~~l~~~  181 (247)
T 2arz_A          122 ---------------VHDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLA--NPFAGEAERGMVEHMNSDHA---AAIAHY  181 (247)
T ss_dssp             ---------------TBBEEEEEEEEEEEEEECTTCCEEEEETTTSCCC--CTTTTHHHHHHHHHHHHHCH---HHHHHH
T ss_pred             ---------------ccCcEEEEEEEEEEEEEcCCCceEEeChhhhccc--hhhhhhhHHHHHHHHHHHHH---HHHHHH
Confidence                           2689999999999999999999999999999988  99998 99999999999999   677999


Q ss_pred             HHHhcCCCCCceEEEeecCCCceEEEecCCcceEEEeecCCCCC
Q 012139          427 CWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC  470 (470)
Q Consensus       427 a~~~~G~~veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA~  470 (470)
                      |+++.|+..+.|+|+|||++|||||+.    .+.+||+|++|+.
T Consensus       182 ~~~~~~~~~~~~~~~~iD~~G~~l~~~----~~~~Ri~F~~~~~  221 (247)
T 2arz_A          182 VELAGLPAHAAAQLAGIDTEGFHLRIG----QGLHWLPFPAACG  221 (247)
T ss_dssp             HHHHCCCCSSCCEEEEECSSEEEEEET----TEEEEEECSSCCC
T ss_pred             HHHhCCCCccceEEEEEccCCCEEEEC----CEEEEEeCCCcCC
Confidence            999999887889999999999999983    2689999999973

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=99.17  E-value=2.4e-11  Score=116.84  Aligned_cols=59  Identities=29%  Similarity=0.424  Sum_probs=50.1

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhcCCC-CCceEEEeecCCCceEEEecCCcceEEEeecCCCC
Q 012139          405 AANIISRLKAGGEKTTQALKSLCWRTKGIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRV  469 (470)
Q Consensus       405 Aa~IIeHMNeDHadaldAL~~ya~~~~G~~-veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA  469 (470)
                      .++||+|||+||+   ++|.+||+++.|+. ++.|+|++||++||||++.   +..++||+|++|+
T Consensus         3 ~~~i~~HMN~DH~---d~~~~~a~~~~~~~~~~~~~~~~iD~~g~~l~~~---~~~~~ri~F~~~~   62 (251)
T 3swj_A            3 FESIISHMNDHHK---SNLVDLCKKFGGIEQVQDVFLKSVDFNGLDLVYN---DKENLRVEFPKKA   62 (251)
T ss_dssp             THHHHHHHHHSCS---HHHHHHHHHHTCCSCCC-CEEEEEETTEEEEEC------CEEEEECSSCC
T ss_pred             HHHHHHHHHHhHH---HHHHHHHHHhCCCCCCCeeEEEEEecccCEEEeC---CceEEEEeCCCCC
Confidence            3589999999999   67799999999984 7899999999999999873   2479999999985

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=99.16  E-value=3.2e-11  Score=117.06  Aligned_cols=59  Identities=31%  Similarity=0.349  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhcCCC-CCceEEEeecCCCceEEEecCCcceEEEeecCCCCC
Q 012139          406 ANIISRLKAGGEKTTQALKSLCWRTKGIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC  470 (470)
Q Consensus       406 a~IIeHMNeDHadaldAL~~ya~~~~G~~-veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA~  470 (470)
                      ++||+|||+||+   +||.+||++|.|+. ++.|+|++||++||||++  + +.+++||+|++|+.
T Consensus         3 ~~ii~HMN~DH~---dal~~y~~~~~~~~~~~~a~m~~iD~~G~~l~~--~-~~~~~ri~F~~~~~   62 (259)
T 3gas_A            3 NRIIEHMNAHHV---EDMKGLLKKFGQVHHAENVAFKSVDSQGIVIGY--N-NNQTLRIEFNHEVK   62 (259)
T ss_dssp             HHHHHHHHHHCH---HHHHHHHHHHHCCCSCCSCEEEEEETTEEEEEE--T-TTEEEEEECSSCCC
T ss_pred             hHHHHHHHHhhH---HHHHHHHHHhCCCCCCCceEEEEEecCccEEEE--C-CceEEEEeCCCcCC
Confidence            589999999999   67799999999985 679999999999999998  2 24799999999873

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1

Probab=99.15  E-value=9.1e-11  Score=106.37  Aligned_cols=162  Identities=17%  Similarity=0.159  Sum_probs=114.2

Q ss_pred             cCCcCchhhcceeEEEEcCeeEEEEeee---ccCccccccccCCCCeee----ccCCCEEEEecCchhHhhhhccCCCce
Q 012139          109 EEARLTAAETSRTIIEVNSTATLMFTDF---TNGGAHENIIWPDLPYVT----DEHGNIYIQVKNEEDILQSLISENNFV  181 (470)
Q Consensus       109 ~~~~lt~aE~aRTivEvN~ka~l~~~~~---v~~e~H~~i~w~e~~Y~~----D~~GdiyFqv~~d~~il~~~~~~nn~v  181 (470)
                      -+.++++++.||+++.-+.-++|---.-   +...|+-...|    |+.    |+-|.+||-+.....=.+.+. .|+-|
T Consensus        13 ~~~~~~~~~~ar~ll~~~~~g~LaTi~~~~~~dG~P~~s~v~----~~~~~~~d~~g~~~f~~s~~~~~~~nl~-~nprv   87 (184)
T 1xhn_A           13 LPPREDAARVARFVTHVSDWGALATISTLEAVRGRPFADVLS----LSDGPPGAGSGVPYFYLSPLQLSVSNLQ-ENPYA   87 (184)
T ss_dssp             CCCTTCHHHHHHHHHHHCSEEEEEEECCCGGGTTCEEEEEEE----CBSCSTTCCCSCCEEEECTTSHHHHHHH-HCCEE
T ss_pred             CCCChHHHHHHHHHHHhCCEEEEEecccCCCCCCcceEEEEE----EEeccCcCCCCCEEEEEeCccHhHHHHh-hCCCE
Confidence            4567889999999999888777644321   14556666654    565    677999999999877777764 55666


Q ss_pred             EEEEecchhHHHHhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccc
Q 012139          182 QVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETM  261 (470)
Q Consensus       182 ~viiG~d~~~~~~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~  261 (470)
                      .+.|.-+...                                                                      
T Consensus        88 Sl~v~~~~~~----------------------------------------------------------------------   97 (184)
T 1xhn_A           88 TLTMTLAQTN----------------------------------------------------------------------   97 (184)
T ss_dssp             EEEEEGGGTT----------------------------------------------------------------------
T ss_pred             EEEEecCCCc----------------------------------------------------------------------
Confidence            6666432210                                                                      


Q ss_pred             cccchhHHHHHHHHHhcCCcccccCCC-CCeeEEEEEeeeccccchhhHHHHhhccccCC-CCCCccccccCCccccccc
Q 012139          262 RSSHPMYFAKKLSEVISDDPIDWMEQP-PAGITIQGLLRPALIEEHSDIQRHRSSNQYHD-VDNSKNVVVGNNQEDLHVI  339 (470)
Q Consensus       262 ~~~HP~yFAk~l~~~~~~~~~~~md~P-~~glsI~G~lrpa~~eE~s~ir~~~~~~~~~~-~y~s~~~~~~~~~e~~~~i  339 (470)
                            |+.|+     ..+|   ++ | -.||+|.|.++++..+|...++++|+.++... .+                 
T Consensus        98 ------~~~~~-----~~dp---~~-~~~~rvtl~G~a~~v~d~e~~~~~~~~~~~hP~~~~~-----------------  145 (184)
T 1xhn_A           98 ------FCKKH-----GFDP---QS-PLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTW-----------------  145 (184)
T ss_dssp             ------HHHHH-----TCCT---TS-TTSCEEEEEEEEEECCGGGHHHHHHHHHHHCGGGGGS-----------------
T ss_pred             ------ccccc-----CCCC---cc-ccCceEEEEEEEEECChHHHHHHHHHHHHHCcChhHc-----------------
Confidence                  00000     0011   11 1 35999999999999777788999999877322 22                 


Q ss_pred             cCCCCCCCCCCCCCcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhhccCC
Q 012139          340 NGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQP  398 (470)
Q Consensus       340 ~~~~~~~d~~~~g~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~A~P  398 (470)
                            .+               .+||.||||++++++|+||||+++||+++||..|++
T Consensus       146 ------~~---------------~~~~~~~~l~i~~i~~v~gFG~~~~v~~~~~~~a~~  183 (184)
T 1xhn_A          146 ------PS---------------SHNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNVTV  183 (184)
T ss_dssp             ------CG---------------GGCCEEEEEEEEEEEEECSSSSCEECCHHHHHHCC-
T ss_pred             ------cc---------------CCCEEEEEEEEeEEEEEccCCceEEeCHHHHhhccC
Confidence                  11               268999999999999999999999999999998876

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=98.69  E-value=6e-09  Score=101.15  Aligned_cols=71  Identities=4%  Similarity=-0.133  Sum_probs=59.5

Q ss_pred             CCeeEEEEEeeecccc-chhhHHHHhhccccC----CCCCCccccccCCccccccccCCCCCCCCCCCCCcccccCCCCC
Q 012139          289 PAGITIQGLLRPALIE-EHSDIQRHRSSNQYH----DVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPM  363 (470)
Q Consensus       289 ~~glsI~G~lrpa~~e-E~s~ir~~~~~~~~~----~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~~~~~~~~~  363 (470)
                      ..|||++|.++++.-+ +...++.+|+.++..    ..|                       .+|               
T Consensus       164 ~~Rlt~~g~A~~v~~~~~~~~~~~~~~~r~p~~~~~~~~-----------------------~~~---------------  205 (259)
T 3gas_A          164 RKRLRYKTNTRFIERGAEFDKAFDSFIEKTGGAGGIKTI-----------------------RAM---------------  205 (259)
T ss_dssp             CCEEEEEEEEEEECSSHHHHHHHHHHHHHHCSTTTHHHH-----------------------HTC---------------
T ss_pred             cCeEEEEEEEEECCCchHHHHHHHHHHHHcCCchhhHhc-----------------------ccC---------------
Confidence            3699999999999853 567899999998733    333                       344               


Q ss_pred             CCeEEEEEEeeeEEEecCCCcccccChhhhhccC
Q 012139          364 NGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQ  397 (470)
Q Consensus       364 ~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~A~  397 (470)
                      +||.||||+|+++|||||||+++||++++|....
T Consensus       206 ~DF~l~rl~p~~~r~v~GFG~a~~l~~~~l~~~~  239 (259)
T 3gas_A          206 QDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVG  239 (259)
T ss_dssp             TTEEEEEEEEEEEEEEEETTEEEEEETTEEEESC
T ss_pred             CCeEEEEEEEeEEEEEccccEEEEeCHHHHHHhh
Confidence            7999999999999999999999999999998643

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=98.60  E-value=2.1e-08  Score=96.46  Aligned_cols=74  Identities=8%  Similarity=-0.040  Sum_probs=58.5

Q ss_pred             CeeEEEEEeeecccc-chhhHHHHhhccccCCCCCCccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 012139          290 AGITIQGLLRPALIE-EHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF  368 (470)
Q Consensus       290 ~glsI~G~lrpa~~e-E~s~ir~~~~~~~~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~~~~~~~~~~DFsF  368 (470)
                      .||+|+|.++++..+ |...++.+|..++....+ ....                  .++               +||.|
T Consensus       165 ~rltl~G~a~~v~~~~e~~~~~~~~~~k~p~a~~-~~~~------------------~~~---------------~Df~l  210 (251)
T 3swj_A          165 KRLRYRVNASFLERGERFDQIYDEFEKQTGGEGG-IKTI------------------RKM---------------LDFHL  210 (251)
T ss_dssp             CEEEEEEEEEECCSSHHHHHHHHHHHHHHCSTTT-HHHH------------------HTC---------------TTEEE
T ss_pred             ceEEEEEEEEEecChhHHHHHHHHHHHHCCCchh-hhhc------------------Ccc---------------cCEEE
Confidence            499999999999864 677889999888733211 0000                  233               79999


Q ss_pred             EEEEeeeEEEecCCCcccccChhhhhccC
Q 012139          369 YKLEMTKIQPILAHAHQAAVDIEDYRKAQ  397 (470)
Q Consensus       369 YRLe~erIrlIGGFGra~WVd~eDy~~A~  397 (470)
                      |||+|+++|||+|||+++||++++|....
T Consensus       211 ~rl~p~~~r~v~GFG~a~~l~~~~l~~~~  239 (251)
T 3swj_A          211 VKLEFKKGRFVKGFGQAYDIENGNVTHVG  239 (251)
T ss_dssp             EEEEEEEEEEEEETTEEEEESSSCCEESC
T ss_pred             EEEEeeEEEEECCcceeEEeCHHHHHHhh
Confidence            99999999999999999999999998755

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}

Probab=98.15  E-value=6.9e-07  Score=78.70  Aligned_cols=59  Identities=8%  Similarity=-0.013  Sum_probs=44.6

Q ss_pred             CCeeEEEEEeeeccc--cchhhHHHHhhccc--cCCCCCCccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCC
Q 012139          289 PAGITIQGLLRPALI--EEHSDIQRHRSSNQ--YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMN  364 (470)
Q Consensus       289 ~~glsI~G~lrpa~~--eE~s~ir~~~~~~~--~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~~~~~~~~~~  364 (470)
                      ..||+|+|.++++..  ++...++++|..++  .+..|                       .++               +
T Consensus        79 ~~rltl~G~a~~v~~~~~~~~~~~~~~~~~~~~~a~~~-----------------------~~~---------------~  120 (148)
T 3tgv_A           79 RKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGL-----------------------SQL---------------Q  120 (148)
T ss_dssp             CCEEEEEEEEEEECTTSHHHHHHHHHHHHHHCTHHHHH-----------------------TTC---------------T
T ss_pred             ceEEEEeeeEEEcCCCcHHHHHHHHHHHhhcchhhhHh-----------------------hcc---------------C
Confidence            369999999999884  34456677777665  22333                       233               7


Q ss_pred             CeEEEEEEeeeEEEecCCCcc
Q 012139          365 GTSFYKLEMTKIQPILAHAHQ  385 (470)
Q Consensus       365 DFsFYRLe~erIrlIGGFGra  385 (470)
                      ||.||||+|+++|||||||-.
T Consensus       121 DF~~~rl~p~~~r~V~GFG~~  141 (148)
T 3tgv_A          121 DFMLFRLQPEQGLFVKGFGLE  141 (148)
T ss_dssp             TEEEEEEEECSCCEEESCGGG
T ss_pred             CEEEEEEEeEEEEEECccccc
Confidence            999999999999999999954

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1

Probab=96.91  E-value=0.00039  Score=60.79  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=37.8

Q ss_pred             chhhcceeEEEEcCeeEEEEeeec-cCccccccccCCCCeeeccCCCEEEEecCchhHhhhhccCCCceEEEE
Q 012139          114 TAAETSRTIIEVNSTATLMFTDFT-NGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVII  185 (470)
Q Consensus       114 t~aE~aRTivEvN~ka~l~~~~~v-~~e~H~~i~w~e~~Y~~D~~GdiyFqv~~d~~il~~~~~~nn~v~vii  185 (470)
                      ..++.+|.+++-+..  .+++++- ...||-...|    |+.|+.|.+||-+.....=.+.+. .|.-|.+.|
T Consensus        18 ~~~~~~~~ll~~~~~--~~LaTv~~dG~P~~~~v~----~~~~~~g~~~f~t~~~s~k~~nl~-~np~vsl~v   83 (157)
T 1vl7_A           18 KAQAEYAGFIQEFQS--AIISTISEQGIPNGSYAP----FVIDDAKNIYIYVSGLAVHTKNIE-ANPLVNVLF   83 (157)
T ss_dssp             -----CHHHHTTCSE--EEEEEECTTSCEEEEEEE----EEECTTCCEEEEECTTSHHHHHHH-HCCEEEEEE
T ss_pred             hHHHHHHHHHHhCCE--EEEEEECCCCCEEEEEEE----EEEcCCCCEEEEEeCccHHHHHHH-hCCcEEEEE
Confidence            445556777654444  4444443 3457766665    778887999999887766666654 444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d2arza1	238	b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps	9e-07

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.8 bits (113), Expect = 9e-07
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 8/112 (7%)

Query: 358 KDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGE 417
            D   ++   F+ L+  + + I        +  E    A P         +         
Sbjct: 113 ADYHRVHDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFAGEAERGMVEH----MNS 168

Query: 418 KTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRV 469
               A+                + G+D+ GF LR+  G         F    
Sbjct: 169 DHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQG----LHWLPFPAAC 216

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d2arza1	238	Hypothetical protein PA4388 {Pseudomonas aeruginos	99.97
d1xhna1	170	Cellular repressor of E1A-stimulated genes CREG1 {	99.56
d1vl7a_	135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	97.92

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=4.4e-31  Score=247.80  Aligned_cols=214  Identities=15%  Similarity=0.129  Sum_probs=170.1

Q ss_pred             chhhcceeEEEEcCeeEEEEeeeccCccccccccCCCCeeeccCCCEEEEecCchhHhhhhccCCCceEEEEecchhHHH
Q 012139          114 TAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMI  193 (470)
Q Consensus       114 t~aE~aRTivEvN~ka~l~~~~~v~~e~H~~i~w~e~~Y~~D~~GdiyFqv~~d~~il~~~~~~nn~v~viiG~d~~~~~  193 (470)
                      -.|+.|||+++.++.|+|=  ++-.+ ..+.=+-+=.+|++|+.|++||=+.+...=-++|. .|+-|.++|..+..   
T Consensus         3 e~a~~aR~ll~~~~~~~Ls--T~~~~-~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~-~d~rvSL~v~~~~~---   75 (238)
T d2arza1           3 EAAKNARELLLKEYRAVLS--THSKK-WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQ-ADPRCSMLVGERGA---   75 (238)
T ss_dssp             HHHHHHHHHHHHCSEEEEE--EECSS-STTCEEEEEEECEECTTSCEEEEEETTSHHHHHHH-HCCEEEEEEECTTC---
T ss_pred             HHHHHHHHHHhhCCeEEEE--ecCCC-CCCCceEEEEEEEECCCCCEEEEEecchHhhHhhh-cCCcEEEEEEcCCc---
Confidence            4689999999999998773  32111 11212223457999999999999998877777765 55667777632100   


Q ss_pred             HhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccccccchhHHHHHH
Q 012139          194 KEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKL  273 (470)
Q Consensus       194 ~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~~~~HP~yFAk~l  273 (470)
                                                            .+                                        
T Consensus        76 --------------------------------------~~----------------------------------------   77 (238)
T d2arza1          76 --------------------------------------ED----------------------------------------   77 (238)
T ss_dssp             --------------------------------------SS----------------------------------------
T ss_pred             --------------------------------------cc----------------------------------------
Confidence                                                  00                                        


Q ss_pred             HHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCCCCCCCCC
Q 012139          274 SEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNG  352 (470)
Q Consensus       274 ~~~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g  352 (470)
                             +     +...|++++|.++++..+|...+|.+|+.+| .+..+                       .++    
T Consensus        78 -------~-----~~~~R~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~~-----------------------~~~----  118 (238)
T d2arza1          78 -------I-----QAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADY-----------------------HRV----  118 (238)
T ss_dssp             -------T-----TSSCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTTC-----------------------BTT----
T ss_pred             -------c-----ccccceeeeeeeEecCchHHHHHHHHHHHhccchhhh-----------------------ccc----
Confidence                   0     1237999999999999999999999999998 34444                       233    


Q ss_pred             CcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhhccCChhhhhhhHHHHHHHhcCChhhHHHHHHHHHHhcC
Q 012139          353 SEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKG  432 (470)
Q Consensus       353 ~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~A~PD~LAasAa~IIeHMNeDHadaldAL~~ya~~~~G  432 (470)
                                 +||.||||+|++++||||||+++||++++|..+.|++ +..+++||+|||+||+   ++|.+||+++++
T Consensus       119 -----------~Df~~~~l~~~~~~~V~GFG~a~~i~~~~~~~~~~~~-~~~~~~ii~hmN~dH~---d~l~~~~~~~~~  183 (238)
T d2arza1         119 -----------HDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA-GEAERGMVEHMNSDHA---AAIAHYVELAGL  183 (238)
T ss_dssp             -----------BBEEEEEEEEEEEEEECTTCCEEEEETTTSCCCCTTT-THHHHHHHHHHHHHCH---HHHHHHHHHHCC
T ss_pred             -----------CcEEEEEEeeeEEEEEcCCCccccccHHHhhhccchh-hhhhHHHHhhcchhhH---HHHHHHHHHhCC
Confidence                       7999999999999999999999999999998877765 5668899999999999   677999999999


Q ss_pred             CCCCceEEEeecCCCceEEEecCCcceEEEeecCCCCC
Q 012139          433 IQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRVC  470 (470)
Q Consensus       433 ~~veeArMIGVDrlGfDLRV~sG~~~~tlRfpFp~pA~  470 (470)
                      +.+++|+|+|||++||||++.    .+++||+|++|+.
T Consensus       184 ~~~~~a~m~~iD~~G~~l~~~----~~~~ri~F~~~~~  217 (238)
T d2arza1         184 PAHAAAQLAGIDTEGFHLRIG----QGLHWLPFPAACG  217 (238)
T ss_dssp             CCSSCCEEEEECSSEEEEEET----TEEEEEECSSCCC
T ss_pred             CCCCceEEEEEccCcCEEEEC----CEEEEEeCCCcCC
Confidence            888999999999999999983    3689999999973

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Cellular repressor of E1A-stimulated genes CREG1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.4e-15  Score=135.37  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=115.2

Q ss_pred             CcCchhhcceeEEEEcCeeEEEEeeeccCccccccccCCC-Cee----eccCCCEEEEecCchhHhhhhccCCCceEEEE
Q 012139          111 ARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDL-PYV----TDEHGNIYIQVKNEEDILQSLISENNFVQVII  185 (470)
Q Consensus       111 ~~lt~aE~aRTivEvN~ka~l~~~~~v~~e~H~~i~w~e~-~Y~----~D~~GdiyFqv~~d~~il~~~~~~nn~v~vii  185 (470)
                      .+...|+.|||+|..++.|+|=  ++-..+.++..=+.-+ +|.    .|..|++||=+.+-..=-++|. .|+-|.++|
T Consensus         3 ~~~~~a~~AR~L~~~~~~g~Ls--TiS~~~~~~G~P~~s~v~~adg~~~~~~G~P~~llS~la~ht~Nl~-~~~~vSL~v   79 (170)
T d1xhna1           3 PREDAARVARFVTHVSDWGALA--TISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQ-ENPYATLTM   79 (170)
T ss_dssp             CTTCHHHHHHHHHHHCSEEEEE--EECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHHHHHH-HCCEEEEEE
T ss_pred             CcHHHHHHHHHHHHhCCEEEEE--EcccCCCCCCccceeEEEEeccCCCCCCCCEEEEEcChhHhHHHHh-hCCCeEEEE
Confidence            3556799999999988888763  3212222332222222 333    4677999999999888888876 678888887


Q ss_pred             ecchhHHHHhhhhcCccccccccccCCCCCCCccCCCCCccCccccccccccceecccCccccccccCcccccccccccc
Q 012139          186 GFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSH  265 (470)
Q Consensus       186 G~d~~~~~~e~~~~~~s~~df~~~~~~ded~d~ed~~~~~~~~~~dedy~~~~~~v~~d~~e~~~~l~dW~~~eT~~~~H  265 (470)
                      .....                                          ++-                              
T Consensus        80 ~~~~~------------------------------------------~~~------------------------------   87 (170)
T d1xhna1          80 TLAQT------------------------------------------NFC------------------------------   87 (170)
T ss_dssp             EGGGT------------------------------------------THH------------------------------
T ss_pred             EecCC------------------------------------------Ccc------------------------------
Confidence            43211                                          000                              


Q ss_pred             hhHHHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCC
Q 012139          266 PMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRN  344 (470)
Q Consensus       266 P~yFAk~l~~~~~~~~~~~md~P~~glsI~G~lrpa~~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~  344 (470)
                               +.-.   .+-|+..-+||||+|.++++..+|...+|++|+.+| .+..|                      
T Consensus        88 ---------~~~~---~dp~~p~~aRlTl~G~~~~v~~~e~~~a~~~yl~rHP~a~~w----------------------  133 (170)
T d1xhna1          88 ---------KKHG---FDPQSPLCVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKTW----------------------  133 (170)
T ss_dssp             ---------HHHT---CCTTSTTSCEEEEEEEEEECCGGGHHHHHHHHHHHCGGGGGS----------------------
T ss_pred             ---------cccC---CCccCCCCcEEEEEEEEEECCcHHHHHHHHHHHHHHHHHHhC----------------------
Confidence                     0000   111233448999999999999999999999999999 44555                      


Q ss_pred             CCCCCCCCCcccccCCCCCCCeEEEEEEeeeEEEecCCCcccccChhhhhcc
Q 012139          345 ESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKA  396 (470)
Q Consensus       345 ~~d~~~~g~~~~~~~~~~~~DFsFYRLe~erIrlIGGFGra~WVd~eDy~~A  396 (470)
                       .++               |||.||||++++|+||||||+++||+++||.+|
T Consensus       134 -~~~---------------~df~f~~l~i~~i~~vgGFG~~~~i~~~eY~~a  169 (170)
T d1xhna1         134 -PSS---------------HNWFFAKLNITNIWVLDYFGGPKIVTPEEYYNV  169 (170)
T ss_dssp             -CGG---------------GCCEEEEEEEEEEEEECSSSSCEECCHHHHHHC
T ss_pred             -ccc---------------CCeEEEEEEeeEEEEECccCcceEeCHHHHhhc
Confidence             233               899999999999999999999999999999975

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein Alr5027
species: Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]

Probab=97.92  E-value=1.3e-06  Score=72.68  Aligned_cols=61  Identities=2%  Similarity=0.005  Sum_probs=44.3

Q ss_pred             CCCeeEEEEEeeecc--ccchhhHHHHhhccccCCCCCCccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 012139          288 PPAGITIQGLLRPAL--IEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNG  365 (470)
Q Consensus       288 P~~glsI~G~lrpa~--~eE~s~ir~~~~~~~~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~~~~g~~~~~~~~~~~~D  365 (470)
                      +..+|+++|.++++.  .+|...++..|..++.....   .+                  .+               .+|
T Consensus        73 ~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~------------------~~---------------~~d  116 (135)
T d1vl7a_          73 ARRRLSFDCTATLIERESQKWNQVVDQFQERFGQIIE---VL------------------RG---------------LAD  116 (135)
T ss_dssp             GCCEEEEEEEEEEECTTSHHHHHHHHHHHHHHTHHHH---HH------------------HH---------------HSC
T ss_pred             cceeEEEEEEEEEccCchHHHHHHHHHHHHHccchhh---hh------------------hc---------------cCC
Confidence            346899999999987  44556777777777632111   00                  01               269


Q ss_pred             eEEEEEEeeeEEEecCCCc
Q 012139          366 TSFYKLEMTKIQPILAHAH  384 (470)
Q Consensus       366 FsFYRLe~erIrlIGGFGr  384 (470)
                      |.||||.|+++|||||||.
T Consensus       117 f~~~rl~p~~ir~v~GFG~  135 (135)
T d1vl7a_         117 FRIFQLTPKEGRFVIGFGA  135 (135)
T ss_dssp             CEEEEEEEEEEEEECSSCC
T ss_pred             eEEEEEEEeEEEEECCcCc
Confidence            9999999999999999994